RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15468
(653 letters)
>d3d7ca1 a.29.2.1 (A:731-832) GCN5 {Human (Homo sapiens) [TaxId:
9606]}
Length = 102
Score = 87.7 bits (217), Expect = 1e-21
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 466 LYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDE 525
LY T+K + F + + PDYYEVIR P+D++ + +LR Y
Sbjct: 3 LYTTLKNLLAQIKSHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRSRYYVTRKL 62
Query: 526 MVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQ 560
VAD ++ N +YN PDS + A +L++
Sbjct: 63 FVADLQRVIANCREYNPPDSEYCRCASALEKFFYF 97
Score = 78.5 bits (193), Expect = 2e-18
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 6/107 (5%)
Query: 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD 331
+ ++L + S P F K P+YY+VI PIDL+T+ R++
Sbjct: 1 DQLYTTLKNLLAQIK------SHPSAWPFMEPVKKSEAPDYYEVIRFPIDLKTMTERLRS 54
Query: 332 GKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKME 378
Y + DL + N +N P S+ + A AL+K K E
Sbjct: 55 RYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYFKLKE 101
Score = 54.2 bits (130), Expect = 7e-10
Identities = 15/60 (25%), Positives = 31/60 (51%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ PID + ++L++ Y F AD++ ++ N + + +S+ R A L + F+
Sbjct: 38 VIRFPIDLKTMTERLRSRYYVTRKLFVADLQRVIANCREYNPPDSEYCRCASALEKFFYF 97
>d1eqfa2 a.29.2.1 (A:1498-1625) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 128
Score = 86.6 bits (214), Expect = 7e-21
Identities = 25/96 (26%), Positives = 43/96 (44%)
Query: 486 FQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDS 545
F ++ PDYY+VI P+D+E I + ++Y+ + + D + N+ KYN P+S
Sbjct: 31 FHHPVNKKFVPDYYKVIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPES 90
Query: 546 HIYKDALSLQRIVLQTKMHLREDEDSVPDVPAAVQE 581
K A + + QT E + +E
Sbjct: 91 QYTKTAQEIVNVCYQTLTEYDEHLTQLEKDICTAKE 126
Score = 80.8 bits (199), Expect = 7e-19
Identities = 31/111 (27%), Positives = 51/111 (45%), Gaps = 1/111 (0%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+D+Q + + ++T + P F +KK P+YY VI P+DL TI + I
Sbjct: 3 DDDDQVAFSFILDNIVT-QKMMAVPDSWPFHHPVNKKFVPDYYKVIVNPMDLETIRKNIS 61
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
KY S D+ L+ N+ +N P SQ K A+ + + E ++
Sbjct: 62 KHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQTLTEYDE 112
Score = 55.0 bits (132), Expect = 7e-10
Identities = 16/65 (24%), Positives = 33/65 (50%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
V+ NP+D I++ + +Y F D+ L++ N+ + SQ + AQE++ + +
Sbjct: 46 VIVNPMDLETIRKNISKHKYQSRESFLDDVNLILANSVKYNGPESQYTKTAQEIVNVCYQ 105
Query: 234 TRNKL 238
T +
Sbjct: 106 TLTEY 110
>d1wuma1 a.29.2.1 (A:715-832) P300/CAF histone acetyltransferase
bromodomain {Human (Homo sapiens) [TaxId: 9606]}
Length = 118
Score = 85.1 bits (210), Expect = 2e-20
Identities = 30/95 (31%), Positives = 49/95 (51%)
Query: 466 LYNTIKETCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDE 525
LY+T+K + Q + F R + P YYEVIR P+D++ ++ +L+ Y
Sbjct: 14 LYSTLKSILQQVKSHQSAWPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLKNRYYVSKKL 73
Query: 526 MVADFIQMFDNACKYNEPDSHIYKDALSLQRIVLQ 560
+AD ++F N +YN P+S YK A L++
Sbjct: 74 FMADLQRVFTNCKEYNPPESEYYKCANILEKFFFS 108
Score = 76.2 bits (187), Expect = 2e-17
Identities = 28/110 (25%), Positives = 47/110 (42%), Gaps = 6/110 (5%)
Query: 271 TEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQ 330
+ + + + V + A F + P YY+VI P+DL+T++ R++
Sbjct: 11 PDQLYSTLKSILQQVKSHQSA------WPFMEPVKRTEAPGYYEVIRFPMDLKTMSERLK 64
Query: 331 DGKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIE 380
+ Y S DL + N +N P S+ YK A L+K +K E
Sbjct: 65 NRYYVSKKLFMADLQRVFTNCKEYNPPESEYYKCANILEKFFFSKIKEAG 114
Score = 54.7 bits (131), Expect = 8e-10
Identities = 26/148 (17%), Positives = 51/148 (34%), Gaps = 36/148 (24%)
Query: 91 TRPKRKKIDPSDAMQQIYDVIRNFKKEDGALLCDPFIRIPKKRQEPSYHEVVTNPIDFIK 150
+ ++ DP + +++ K A PF+ K+ + P Y+EV+ P+D
Sbjct: 2 SHMSKEPRDPDQLYSTLKSILQQVKSHQSA---WPFMEPVKRTEAPGYYEVIRFPMDLKT 58
Query: 151 IQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNA 210
+ ++LK Y F AD++ + N
Sbjct: 59 MSERLKNRYYVSKKLFMADLQRVF---------------------------------TNC 85
Query: 211 KTFYKRNSQEHRDAQELMELFHSTRNKL 238
K + S+ ++ A L + F S +
Sbjct: 86 KEYNPPESEYYKCANILEKFFFSKIKEA 113
Score = 26.2 bits (57), Expect = 7.2
Identities = 10/46 (21%), Positives = 17/46 (36%), Gaps = 6/46 (13%)
Query: 607 DNKPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
D L L ++ + + ++ FME P YY+V
Sbjct: 10 DPDQLYSTLKSILQQVKSHQS------AWPFMEPVKRTEAPGYYEV 49
>d1e6ia_ a.29.2.1 (A:) GCN5 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 111
Score = 84.2 bits (208), Expect = 3e-20
Identities = 22/93 (23%), Positives = 47/93 (50%)
Query: 480 RQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACK 539
+ F + ++ + PDYY+ I++P+D+ + KL N+Y+ +++ + D +F+N
Sbjct: 18 HAAAWPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRM 77
Query: 540 YNEPDSHIYKDALSLQRIVLQTKMHLREDEDSV 572
YN ++ YK A L++ + E +
Sbjct: 78 YNGENTSYYKYANRLEKFFNNKVKEIPEYSHLI 110
Score = 76.9 bits (189), Expect = 1e-17
Identities = 27/108 (25%), Positives = 45/108 (41%), Gaps = 6/108 (5%)
Query: 274 EQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGK 333
+++ + A F +K+ P+YYD I P+DL T+ +++ K
Sbjct: 4 HDAAIQNILTELQNHAAA------WPFLQPVNKEEVPDYYDFIKEPMDLSTMEIKLESNK 57
Query: 334 YASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
Y + D D L+ N +N + YK A L+K K EI +
Sbjct: 58 YQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNNKVKEIPE 105
Score = 53.0 bits (127), Expect = 2e-09
Identities = 14/65 (21%), Positives = 34/65 (52%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+ P+D ++ KL++++Y + DF D L+ N + + N+ ++ A L + F++
Sbjct: 39 FIKEPMDLSTMEIKLESNKYQKMEDFIYDARLVFNNCRMYNGENTSYYKYANRLEKFFNN 98
Query: 234 TRNKL 238
++
Sbjct: 99 KVKEI 103
Score = 25.7 bits (56), Expect = 8.2
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 6/44 (13%)
Query: 609 KPLKRRLYTLCKCLMDYRDQDGRQPMLMFMELPSAKIYPEYYKV 652
P + + L ++ F++ + + P+YY
Sbjct: 2 GPHDAAIQNILTELQNHAA------AWPFLQPVNKEEVPDYYDF 39
>d1eqfa1 a.29.2.1 (A:1359-1497) TAFII250 double bromodomain module
{Human (Homo sapiens) [TaxId: 9606]}
Length = 139
Score = 84.3 bits (208), Expect = 6e-20
Identities = 19/93 (20%), Positives = 42/93 (45%), Gaps = 3/93 (3%)
Query: 483 SHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNE 542
++ F + DYY++I +P+D++ + +R Y +E + N+ YN
Sbjct: 44 TYPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIVKNSATYNG 103
Query: 543 PDSHIYKDALSLQRIVLQTKMHLREDEDSVPDV 575
P + + + S+ + + L+E ED + +
Sbjct: 104 PKHSLTQISQSMLDLCDE---KLKEKEDKLARL 133
Score = 84.3 bits (208), Expect = 6e-20
Identities = 24/107 (22%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Query: 275 QNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQDGKY 334
+ E + N + + F + K +YY +I P+DL+T+ ++ Y
Sbjct: 28 SSILESIINDMRDLPNT------YPFHTPVNAKVVKDYYKIITRPMDLQTLRENVRKRLY 81
Query: 335 ASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
S + + L L+ KN+ T+N P + + ++++ L K E E
Sbjct: 82 PSREEFREHLELIVKNSATYNGPKHSLTQISQSMLDLCDEKLKEKED 128
Score = 64.2 bits (156), Expect = 6e-13
Identities = 22/161 (13%), Positives = 53/161 (32%), Gaps = 37/161 (22%)
Query: 79 SSSHTSETPTMQTRPKRKKIDPSDAMQQIY-DVIRNFKKEDGALLCDPFIRIPKKRQEPS 137
++ H R++ DP + I +I + + PF +
Sbjct: 2 TTVHCDYLNRPHKSIHRRRTDPMVTLSSILESIINDMRDLPNT---YPFHTPVNAKVVKD 58
Query: 138 YHEVVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVVTNPIDFIKIQQKLKTDEYDDLS 197
Y++++T P+D +++ ++ Y +F+ +EL+V
Sbjct: 59 YYKIITRPMDLQTLRENVRKRLYPSREEFREHLELIV----------------------- 95
Query: 198 DFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHSTRNKL 238
KN+ T+ + +Q +++L +
Sbjct: 96 ----------KNSATYNGPKHSLTQISQSMLDLCDEKLKEK 126
>d3dwya1 a.29.2.1 (A:1084-1197) CREB-binding protein, CBP {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 80.8 bits (199), Expect = 6e-19
Identities = 24/71 (33%), Positives = 36/71 (50%)
Query: 490 PSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYK 549
P PDY+++++ P+D+ I KL QY+ + V D MF+NA YN S +YK
Sbjct: 34 PQLLGIPDYFDIVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYK 93
Query: 550 DALSLQRIVLQ 560
L + Q
Sbjct: 94 FCSKLAEVFEQ 104
Score = 78.8 bits (194), Expect = 2e-18
Identities = 28/110 (25%), Positives = 50/110 (45%), Gaps = 3/110 (2%)
Query: 272 EDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRYPEYYDVIDVPIDLRTIARRIQD 331
E+ + A+ D +S P + P P+Y+D++ P+DL TI R++
Sbjct: 5 EELRQALMPTLEALY-RQDPESLPFRQPVD--PQLLGIPDYFDIVKNPMDLSTIKRKLDT 61
Query: 332 GKYASLGDMEKDLILMTKNACTFNEPGSQIYKDAKALKKLVQTKKMEIEQ 381
G+Y D+ LM NA +N S++YK L ++ + + + Q
Sbjct: 62 GQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQEIDPVMQ 111
Score = 59.2 bits (143), Expect = 2e-11
Identities = 17/66 (25%), Positives = 37/66 (56%)
Query: 174 VVTNPIDFIKIQQKLKTDEYDDLSDFQADIELLVKNAKTFYKRNSQEHRDAQELMELFHS 233
+V NP+D I++KL T +Y + + D+ L+ NA + ++ S+ ++ +L E+F
Sbjct: 45 IVKNPMDLSTIKRKLDTGQYQEPWQYVDDVWLMFNNAWLYNRKTSRVYKFCSKLAEVFEQ 104
Query: 234 TRNKLL 239
+ ++
Sbjct: 105 EIDPVM 110
>d1a9xa1 a.92.1.1 (A:403-555) Carbamoyl phosphate synthetase, large
subunit connection domain {Escherichia coli [TaxId:
562]}
Length = 153
Score = 28.9 bits (64), Expect = 0.99
Identities = 24/110 (21%), Positives = 39/110 (35%), Gaps = 5/110 (4%)
Query: 416 DESEDDEEIDQE--DPNS-PLWQVYDAIRNAKTQGVIFFFFGVTAASLQKMRILYNTIKE 472
D+ E +I +E D + +W + DA R + +F + L ++ L ++E
Sbjct: 14 DDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVR-LEE 72
Query: 473 TCEPKTGRQLSHIFQRLPSRHDYPDYYEVIRKPVDMEMIASKLRYNQYEH 522
L+ F R R + D V I KLR H
Sbjct: 73 KVAEVGITGLNADFLRQLKRKGFADARLAKLAGVREAEI-RKLRDQYDLH 121
>d1s9ua_ a.184.1.1 (A:) Putative component of anaerobic
dehydrogenases YnfI {Salmonella typhimurium [TaxId:
90371]}
Length = 207
Score = 27.7 bits (61), Expect = 3.8
Identities = 21/144 (14%), Positives = 56/144 (38%), Gaps = 17/144 (11%)
Query: 478 TGRQLSHIFQRLPSRHDYPDYYEVIRK-------PVDMEMIASKLRYNQYEHLDEMVADF 530
T R L +F P H+ + + P+D E +A + + + +
Sbjct: 16 TARVLGALFYYSPESHETAPLVQALLNDDWQAQWPLDAEALAPVAAMFKTHSEESLPQAW 75
Query: 531 IQMFDNACK---------YNEPDSHIYKDA-LSLQRIVLQTKMHLREDEDSVPDVPAAVQ 580
++F + + +S ++ D+ L+L++ + + + ++ D ++
Sbjct: 76 QRLFIGPYALPSPPWGSVWLDRESVLFGDSTLALRQWMRENGIQFEMQQNEPEDHFGSLL 135
Query: 581 ELLTSLFTSVYNHQKQCLGSFHVL 604
L L + +H+ + L ++H+
Sbjct: 136 LLAAWLAENDRHHECEQLLAWHLF 159
>d1fs7a_ a.138.1.3 (A:) Cytochrome c nitrite reductase {Wolinella
succinogenes [TaxId: 844]}
Length = 471
Score = 27.4 bits (60), Expect = 6.5
Identities = 18/79 (22%), Positives = 28/79 (35%), Gaps = 8/79 (10%)
Query: 495 YPDYYEVIRKPVDMEMIASKLRYNQYEHLDEMVADFIQMFDNACKYNEPDSHIYKDALSL 554
YP ++ +K + + I L + L A + D YN P H Y AL
Sbjct: 21 YPRQFDSWKKTKESDNITDML--KEKPALVVAWAGYPFSKD----YNAPRGHYY--ALQD 72
Query: 555 QRIVLQTKMHLREDEDSVP 573
L+T + +P
Sbjct: 73 NINTLRTGAPVDGKTGPLP 91
>d1iq0a1 a.27.1.1 (A:467-592) Arginyl-tRNA synthetase (ArgRS)
{Thermus thermophilus [TaxId: 274]}
Length = 126
Score = 26.2 bits (57), Expect = 6.6
Identities = 21/107 (19%), Positives = 37/107 (34%), Gaps = 8/107 (7%)
Query: 517 YNQYEHLDEMVADFIQMFDNACKYNEPD-SHIYKDALSLQRIVLQTKMHLREDEDSVPDV 575
Y QY H A + A ++ PD S +L +L + + E +
Sbjct: 6 YVQYAH-----ARAHSILRKAGEWGAPDLSQATPYERALALDLLDFEEAVLEAAEERTPH 60
Query: 576 PAAV-QELLTSLFTSVYNHQKQCLGSFHVLNVDNKPLKRRLYTLCKC 621
A L + + + YN ++ + VL + RL L +
Sbjct: 61 VLAQYLLDLAASWNAYYNARENGQPATPVLTAPEGLRELRLS-LVQS 106
>d1pd0a1 a.71.2.1 (A:647-753) Sec24 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 107
Score = 25.9 bits (57), Expect = 7.2
Identities = 11/88 (12%), Positives = 25/88 (28%), Gaps = 15/88 (17%)
Query: 250 KRSMDFMMASETEDSRDSSICTEDEQNQCEDLFNAVMTSTDADSRPLHEVFQLLPSKKRY 309
++++ + S +D+R +D+ + +L + + +
Sbjct: 11 SKAVEKALNSSLDDARVLI------NKSVQDILATYKKEIVVSNTAGGAPLRLCANLRMF 64
Query: 310 PEYY---------DVIDVPIDLRTIARR 328
P VP D R A
Sbjct: 65 PLLMHSLTKHMAFRSGIVPSDHRASALN 92
>d1w1oa1 d.58.32.4 (A:246-534) Cytokinin dehydrogenase 1 {Maize (Zea
mays) [TaxId: 4577]}
Length = 289
Score = 26.4 bits (58), Expect = 9.9
Identities = 8/29 (27%), Positives = 10/29 (34%)
Query: 160 YDDLSDFQADIELLVVTNPIDFIKIQQKL 188
Y D + F AD E L P +
Sbjct: 11 YTDFAAFSADQERLTAPRPGGGGASFGPM 39
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.134 0.382
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,425,106
Number of extensions: 117346
Number of successful extensions: 345
Number of sequences better than 10.0: 1
Number of HSP's gapped: 343
Number of HSP's successfully gapped: 37
Length of query: 653
Length of database: 2,407,596
Length adjustment: 91
Effective length of query: 562
Effective length of database: 1,158,166
Effective search space: 650889292
Effective search space used: 650889292
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 56 (25.7 bits)