Query psy15469
Match_columns 297
No_of_seqs 189 out of 929
Neff 6.5
Searched_HMMs 46136
Date Fri Aug 16 21:50:47 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15469.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15469hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3512|consensus 100.0 9.5E-87 2.1E-91 633.8 20.6 281 1-297 43-332 (592)
2 smart00136 LamNT Laminin N-ter 100.0 1E-78 2.2E-83 551.8 21.2 229 1-238 3-238 (238)
3 PF00055 Laminin_N: Laminin N- 100.0 8.7E-78 1.9E-82 546.2 14.2 228 5-238 1-237 (237)
4 KOG0994|consensus 100.0 2.2E-76 4.7E-81 601.6 18.1 280 3-297 34-337 (1758)
5 KOG1836|consensus 100.0 3.7E-62 8E-67 529.0 12.4 287 2-297 39-337 (1705)
6 KOG0994|consensus 98.8 1.9E-09 4.2E-14 113.1 2.8 61 236-297 335-400 (1758)
7 cd00055 EGF_Lam Laminin-type e 98.3 5.4E-07 1.2E-11 62.8 4.1 42 239-287 1-45 (50)
8 KOG3512|consensus 98.3 3.5E-07 7.7E-12 89.3 2.8 59 232-290 326-389 (592)
9 PF00053 Laminin_EGF: Laminin 98.1 7.9E-07 1.7E-11 61.5 1.2 42 240-288 1-45 (49)
10 smart00180 EGF_Lam Laminin-typ 97.9 1E-05 2.2E-10 55.4 3.5 37 240-283 1-40 (46)
11 PF00754 F5_F8_type_C: F5/8 ty 97.4 0.00038 8.3E-09 55.4 5.7 66 58-131 16-85 (129)
12 KOG1836|consensus 97.1 0.00038 8.2E-09 78.4 3.6 57 226-289 717-773 (1705)
13 cd00057 FA58C Substituted upda 96.7 0.0048 1E-07 50.6 6.3 65 57-130 24-93 (143)
14 PF02012 BNR: BNR/Asp-box repe 93.8 0.048 1E-06 27.0 1.6 12 117-128 1-12 (12)
15 cd08366 APC10 APC10 subunit of 93.8 0.15 3.3E-06 43.0 5.7 54 57-118 18-76 (139)
16 cd08667 APC10-ZZEF1 APC10/DOC1 93.3 0.2 4.2E-06 42.0 5.5 54 57-117 14-71 (131)
17 cd08666 APC10-HECTD3 APC10-lik 93.0 0.23 5E-06 41.7 5.4 54 57-117 19-76 (134)
18 cd08365 APC10-like1 APC10-like 92.7 0.27 5.9E-06 41.1 5.5 54 57-117 15-72 (131)
19 KOG3437|consensus 91.6 0.42 9.1E-06 41.8 5.5 66 56-133 36-106 (184)
20 cd08159 APC10-like APC10-like 91.6 0.42 9.2E-06 39.9 5.4 54 57-117 14-71 (129)
21 cd08665 APC10-CUL7 APC10-like 90.9 0.71 1.5E-05 38.6 6.1 53 57-116 14-70 (131)
22 PF03256 APC10: Anaphase-promo 90.7 0.46 9.9E-06 42.3 5.1 55 57-119 45-105 (193)
23 KOG3509|consensus 88.1 0.31 6.6E-06 52.7 2.3 42 239-287 753-795 (964)
24 KOG1388|consensus 86.2 0.33 7.1E-06 43.7 1.1 39 237-284 49-88 (217)
25 COG5156 DOC1 Anaphase-promotin 84.6 0.74 1.6E-05 39.6 2.4 52 57-116 41-97 (189)
26 cd08664 APC10-HERC2 APC10-like 83.6 3.4 7.5E-05 35.4 6.1 53 56-116 37-93 (152)
27 KOG4260|consensus 78.3 2.4 5.2E-05 39.8 3.6 76 190-283 115-190 (350)
28 smart00231 FA58C Coagulation f 66.4 8.7 0.00019 31.5 4.0 43 87-130 45-89 (139)
29 KOG4289|consensus 53.9 17 0.00036 41.6 4.3 27 257-283 1256-1288(2531)
30 PF01834 XRCC1_N: XRCC1 N term 52.0 8.9 0.00019 32.9 1.6 49 52-106 12-62 (153)
31 cd02847 Chitobiase_C_term Chit 47.7 31 0.00067 26.2 3.8 32 98-130 18-49 (78)
32 PF06219 DUF1005: Protein of u 46.2 13 0.00028 37.0 1.9 47 86-133 246-303 (460)
33 smart00607 FTP eel-Fucolectin 41.5 72 0.0016 27.1 5.6 19 89-107 54-72 (151)
34 PF07738 Sad1_UNC: Sad1 / UNC- 40.1 88 0.0019 25.5 5.9 54 69-130 22-83 (135)
35 PF12661 hEGF: Human growth fa 37.4 12 0.00026 18.8 0.1 13 262-274 1-13 (13)
36 PF13088 BNR_2: BNR repeat-lik 37.3 92 0.002 27.9 6.1 18 113-130 183-200 (275)
37 PF04863 EGF_alliinase: Alliin 30.4 11 0.00024 26.8 -0.9 34 241-276 18-51 (56)
38 PHA02887 EGF-like protein; Pro 28.5 38 0.00082 27.9 1.7 26 248-276 98-123 (126)
39 PF13810 DUF4185: Domain of un 26.6 98 0.0021 29.5 4.5 39 92-130 102-145 (316)
40 KOG4289|consensus 26.6 38 0.00083 38.9 1.8 47 225-281 1795-1843(2531)
41 KOG4276|consensus 25.5 82 0.0018 25.2 3.0 48 89-137 10-61 (113)
42 PHA03099 epidermal growth fact 25.2 39 0.00084 28.3 1.3 28 248-278 57-84 (139)
43 PF11280 DUF3081: Protein of u 24.5 73 0.0016 24.3 2.5 32 60-101 31-62 (79)
44 PF13088 BNR_2: BNR repeat-lik 22.4 1.9E+02 0.0042 25.7 5.4 46 88-133 52-98 (275)
45 KOG1388|consensus 20.7 66 0.0014 29.2 1.9 54 227-287 84-140 (217)
No 1
>KOG3512|consensus
Probab=100.00 E-value=9.5e-87 Score=633.83 Aligned_cols=281 Identities=44% Similarity=0.793 Sum_probs=258.8
Q ss_pred CCCcCCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCcccc-cccCCC----CCCceeccCCCC--ceeEe
Q psy15469 1 MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCD-YCYEDT----HPVRYLTDLSNT--TTWWQ 73 (297)
Q Consensus 1 ~~~~c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~-~Cd~~~----Hp~~~~~D~~~~--~twWQ 73 (297)
.|.+|.|.|+|+|+|++|.|++|||. +||.||.+.+.. .|. .|||++ |||++|+|.+++ .|+||
T Consensus 43 ~p~~C~P~~vnaa~g~~V~as~TCGd-----rPe~~c~~~~~~----~~~~eCdAs~p~~AHpPalltD~n~~~n~TcWq 113 (592)
T KOG3512|consen 43 EPRACQPEFVNAAFGKKVPASSTCGD-----RPETFCSVENPY----LCSNECDASNPDLAHPPALLTDLNGPGNATCWQ 113 (592)
T ss_pred CeeecChhhhhhhhCCccCCccccCC-----CccceeeecCCC----cccccccCCCccccCChHHhcCCCCCCCcceee
Confidence 47899999999999999999999995 999999998654 353 667763 999999998866 99999
Q ss_pred ccccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCC-CCCCCCCCCC
Q psy15469 74 STTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGL-PDDNSGKAND 152 (297)
Q Consensus 74 S~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~-~~~~~~~~~~ 152 (297)
|++|+. .+.|.+|||||+|+|.||||||+|+|+|+||++|+||||+|+|+||+||||||++|++.||| +....+...
T Consensus 114 S~tw~~-~~~PlnVtlTLSlgKkfELT~Vsl~FcS~rPdsmaL~KS~D~GrTWqPfQFYss~C~~~fgr~~~~a~isk~- 191 (592)
T KOG3512|consen 114 SETWSR-YPSPLNVTLTLSLGKKFELTYVSLTFCSGRPDSMALEKSLDYGRTWQPFQFYSSDCRKAFGRSPRRADISKS- 191 (592)
T ss_pred ccccCC-CCCCceEEEEEecCcEEEEEEEEEEEecCCCceeeeeeccccCCcccccchhHHHHHHHhCCCCcccccccC-
Confidence 999875 47789999999999999999999999999999999999999999999999999999999999 666667665
Q ss_pred CCCceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccCCccccceeeeeee
Q psy15469 153 SDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIA 232 (297)
Q Consensus 153 ~~~~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~~~~~~~~~yYai~ 232 (297)
+++|++||++|+...+..++.|+|..|++||++.++++|++||||||||||||+|+|++++|++. .|...+.+|||||+
T Consensus 192 n~~Ea~Ct~s~~~~~~~~~~~~af~~l~~Rps~~dldss~vLqDwvTaTDiRvvl~Rp~s~G~~~-dde~~l~rYfYAis 270 (592)
T KOG3512|consen 192 NEQEALCTESYSDGAGSGGGKIAFFELEDRPSAFDLDSSPVLQDWVTATDIRVVLLRPASLGEEY-DDEANLARYFYAIS 270 (592)
T ss_pred CccceeeccccccCCCCCCceEEeeeecCCccccccccchhhhhheeeeeeEEEEechhhcCCcc-hhhhhhhhhheecc
Confidence 89999999999999999999999999999999999999999999999999999999999988754 46667788999999
Q ss_pred ceeecccccCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCCCC-CCCCCCC
Q psy15469 233 DISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRAS-DDANECR 297 (297)
Q Consensus 233 ~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a~-~~~n~C~ 297 (297)
||.|+|||+|||||++|+++ .+++++|+|+|||+|+.|++|+|+|+++||++|+ ..+|+|+
T Consensus 271 dl~VgGRCKCNgHAs~Cv~d----~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ 332 (592)
T KOG3512|consen 271 DLAVGGRCKCNGHASRCVMD----ESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECV 332 (592)
T ss_pred cceeeeeeeecCccceeeec----cCCceEEecccCCCCCCcccccccccCCCccccccCCCcccc
Confidence 99999999999999999975 3567999999999999999999999999999999 9999884
No 2
>smart00136 LamNT Laminin N-terminal domain (domain VI). N-terminal domain of laminins and laminin-related protein such as Unc-6/ netrins.
Probab=100.00 E-value=1e-78 Score=551.84 Aligned_cols=229 Identities=45% Similarity=0.838 Sum_probs=213.7
Q ss_pred CCCcCCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCcccccccCCC----CCCceeccCCCC--ceeEec
Q psy15469 1 MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDT----HPVRYLTDLSNT--TTWWQS 74 (297)
Q Consensus 1 ~~~~c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~~Cd~~~----Hp~~~~~D~~~~--~twWQS 74 (297)
.|++|+|+|+|||+|++|.|+||||+ + +||+||++++.....++|++||+++ ||+++|+|.+++ .|||||
T Consensus 3 ~~~~C~P~~~nla~g~~v~assTCG~-~---~pe~yC~~~~~~~~~~~C~~CDa~~p~~~Hp~~~l~D~~~~~~~TwWQS 78 (238)
T smart00136 3 RPRSCYPPFVNLAFGREVTATSTCGE-P---GPERYCKLVGHTEQGKKCDYCDARNPRRSHPAENLTDGNNPNNPTWWQS 78 (238)
T ss_pred CCccccCchhhhhcCCeeeEecCCCC-C---CCcceeEeccccCcCCcCCCCCCCCccccCCHHHhhccCCCCCCceecC
Confidence 48999999999999999999999998 6 8999999964444567899999994 999999998755 799999
Q ss_pred cccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCCCCCCCCCCCCCC
Q psy15469 75 TTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSD 154 (297)
Q Consensus 75 ~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~~~~~~~~~~~~~ 154 (297)
+++.+|. .+|||||||+|+|||+||+|+|+||||++|+|||| |+|+||+||||||.||.+.|||+++..+.+. ++
T Consensus 79 ~~~~~~~---~~VtitLdL~k~fevtyi~l~F~s~RPa~~i~erS-d~G~tW~p~qyfa~dC~~~f~~~~~~~~~~~-n~ 153 (238)
T smart00136 79 EPLSNGP---QNVNLTLDLGKEFHVTYVILKFCSPRPSLWILERS-DFGKTWQPWQYFSSDCRRTFGRPPRGPITKG-NE 153 (238)
T ss_pred CCcCCCC---ccEEEEEecCCEEEEEEEEEEecCCCCceEEEeec-CCCCCCcEeeeeecchhhhcCCCCCCCCCCC-CC
Confidence 9998765 37999999999999999999999999999999988 9999999999999999999999999888776 78
Q ss_pred CceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccCC-ccccceeeeeeec
Q psy15469 155 TRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLD-PSVLRSYFYAIAD 233 (297)
Q Consensus 155 ~~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~~-~~~~~~~yYai~~ 233 (297)
++|+||++||++.|+++|+|+|++|+|||++.+|++|++||||++||||||+|+|++++|++++.+ +.++++|||||+|
T Consensus 154 ~~v~Ct~~ys~~~P~~~g~V~fs~l~~rps~~~~~~S~~LQd~vtaTdiRi~l~rl~t~g~~~~~~~~~~~~~yyYAIsd 233 (238)
T smart00136 154 DEVICTSEYSDIVPLEGGEIAFSLLEGRPSATDFDNSPVLQEWVTATNIRVRLTRLRTLGDELMDDRPEVTRRYYYAISD 233 (238)
T ss_pred CccEECCCCCCCcCCCCCEEEEEecCCCCCCcCCCCCHHHHhheeeeEEEEEEEccCcCCccccccccccccceeEEEEe
Confidence 999999999999999999999999999999999999999999999999999999999999998876 7789999999999
Q ss_pred eeecc
Q psy15469 234 ISVGA 238 (297)
Q Consensus 234 i~v~g 238 (297)
|.|+|
T Consensus 234 i~VgG 238 (238)
T smart00136 234 IAVGG 238 (238)
T ss_pred eEecC
Confidence 99987
No 3
>PF00055 Laminin_N: Laminin N-terminal (Domain VI); InterPro: IPR008211 Laminin is a large molecular weight glycoprotein present only in basement membranes in almost every animal tissue. Laminin is thought to mediate the attachment, migration and organisation of cells into tissues during embryonic development by interacting with other extracellular matrix components []. Each laminin is a heterotrimer assembled from alpha, beta and gamma chain subunits, secreted and incorporated into cell-associated extracellular matrices []. Basement membrane assembly is a cooperative process in which laminins polymerise through their N-terminal domain (LN or domain VI) and anchor to the cell surface through their G domains. Netrins may also associate with this network through heterotypic LN domain interactions []. This leads to cell signalling through integrins and dystroglycan (and possibly other receptors) recruited to the adherent laminin. This LN domain dependent self-assembly is considered to be crucial for the integrity of basement membranes, as highlighted by genetic forms of muscular dystrophy containing the deletion of the LN module from the alpha 2 laminin chain []. The laminin N-terminal domain is found in all laminin and netrin subunits except laminin alpha 3A, alpha 4 and gamma 2. ; PDB: 3TBD_A 3ZYG_B 3ZYI_B 3ZYJ_D 2Y38_A.
Probab=100.00 E-value=8.7e-78 Score=546.20 Aligned_cols=228 Identities=47% Similarity=0.876 Sum_probs=176.1
Q ss_pred CCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCcccccccCC------CCCCceeccCCCC--ceeEeccc
Q psy15469 5 CIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYED------THPVRYLTDLSNT--TTWWQSTT 76 (297)
Q Consensus 5 c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~~Cd~~------~Hp~~~~~D~~~~--~twWQS~~ 76 (297)
|+|+|+|||+||.|+|+||||+ + +||+||++.+..+...+|.+||++ +||+++|+|.+++ .|||||++
T Consensus 1 C~P~~~nla~gr~v~assTCG~-~---~pe~yC~~~~~~~~~~~C~~Cda~~~~~~~~Hp~~~~~D~~~~~~~TwWQS~~ 76 (237)
T PF00055_consen 1 CYPPFGNLAFGREVTASSTCGE-P---GPERYCRLSGSQGRQRQCFICDASDPDPRRSHPPSYLTDSHNPNNSTWWQSET 76 (237)
T ss_dssp -----EETTTT-EEECCCBS-S-S-----EEE--SSSTTT---E-EEE-TTSTSTTT---GGGGCSSSCTTB---EEB--
T ss_pred CCCCcchhhcCCEeEEEcCCCC-C---CCccceeccCccccCcccccCCCcccccccccChhhcccccccccCceecCCc
Confidence 9999999999999999999999 6 899999998876556789999998 3999999998754 79999999
Q ss_pred cCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCCCCCCCCCCCCCCCc
Q psy15469 77 MYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTR 156 (297)
Q Consensus 77 ~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~~~~~~~~~~~~~~~ 156 (297)
+..|.+++ +|||||||+++|||+||+|+|+||||++|+||||+|+| +|+||||||.||.+.|||++.+.+....++++
T Consensus 77 ~~~g~~~~-~VtitLdL~~~f~v~~v~l~F~spRP~~miierS~D~g-tW~p~qYfA~~C~~~f~~~~~~~~~~~~~~~~ 154 (237)
T PF00055_consen 77 LQNGVQYE-NVTITLDLGKEFEVTYVILQFCSPRPAAMIIERSSDFG-TWQPWQYFASDCSRTFGMPPNGPPPKFANPDE 154 (237)
T ss_dssp STTTTSTT--EEEEEEEEEEEEEEEEEEEESS---SEEEEEEESSTT-SEEEEEEEESSHHHHCS--BTTGGG-STSTT-
T ss_pred cCCCCcCc-ceEEEEcccceEEEEEEEEEEcCCCCCeEEEEEccCCC-ceeEeHHhhcCChhhcCCcccccccccCCCCc
Confidence 99998876 99999999999999999999999999999999999999 99999999999999999999887765447899
Q ss_pred eeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccC-Cccccceeeeeeecee
Q psy15469 157 VFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFL-DPSVLRSYFYAIADIS 235 (297)
Q Consensus 157 v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~-~~~~~~~~yYai~~i~ 235 (297)
|+||++||++.|+++|+|+|++|+|||++.++++|++||||++||||||+|+|++++|++++. ++.++++|||||+||.
T Consensus 155 v~Ct~~yS~~~P~~~g~V~f~~l~grP~~~~~~~S~~Lq~~~~aT~lRi~l~~~~t~~~~~~~~~~~~~~~yyYAI~di~ 234 (237)
T PF00055_consen 155 VICTSRYSDIEPLTGGEVIFSLLEGRPSANDFDPSPELQDWVTATNLRIRLTRLHTLGDELMDRDPKVLRSYYYAISDIQ 234 (237)
T ss_dssp --EESTTTTSSSTSTTEEEEESHHCCCCCTTHHHSHHHHHHCEEEEEEEEEEE----TTSSCHH-TTTGGG---EEEEEE
T ss_pred CeecCcCCCCcCccccceeeeeccCCCCCCcCCCCHHHHhhhceeEEEEEEeeeccCCCcccCcCcccCccccEEEEEEE
Confidence 999999999999999999999999999999999999999999999999999999999999887 8999999999999999
Q ss_pred ecc
Q psy15469 236 VGA 238 (297)
Q Consensus 236 v~g 238 (297)
|+|
T Consensus 235 V~G 237 (237)
T PF00055_consen 235 VGG 237 (237)
T ss_dssp EEE
T ss_pred EeC
Confidence 987
No 4
>KOG0994|consensus
Probab=100.00 E-value=2.2e-76 Score=601.57 Aligned_cols=280 Identities=33% Similarity=0.633 Sum_probs=247.0
Q ss_pred CcCCCCccccccCC--eeEEeccccCCCCCCCCCcceeecCCccCCcccccccCCC----CC-Cceecc----CCCC---
Q psy15469 3 NRCIPPFENAAFSA--SVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDT----HP-VRYLTD----LSNT--- 68 (297)
Q Consensus 3 ~~c~P~~~n~a~~~--~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~~C~~Cd~~~----Hp-~~~~~D----~~~~--- 68 (297)
..|+|.++||+.|| +++|+||||+ + +||+||++++..+ +++|++||++. |+ ++++++ ...+
T Consensus 34 ~sCyP~tGnLliGR~~~L~AsSTCGl-~---~pe~yCi~Shlqd-q~KCf~Cdsr~p~~~~~~pshrienVvss~~p~r~ 108 (1758)
T KOG0994|consen 34 GSCYPATGNLLIGRARKLTASSTCGL-N---KPERYCIVSHLQD-QKKCFKCDSRYPHKAHLNPSHRIENVVSSFAPPRN 108 (1758)
T ss_pred CCcCCCccceeecchhheeecccccC-C---CCcceEEeecccc-ccccccccCCCccccCCChhhhhhhhhhccCCCcc
Confidence 47999999999999 8999999999 8 9999999999875 78899999994 32 344444 2222
Q ss_pred ceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCCCCCCCC
Q psy15469 69 TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSG 148 (297)
Q Consensus 69 ~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~~~~~~~ 148 (297)
.|||||+++. ++|+|+|||+.+|||||+||+|+++||++|+||||+|||+||++|+|||.||..+|+-.+.++.
T Consensus 109 ~~WWQSengv------~~vtIQLDLEAEFhFTHLImtFktfRPAAMliERS~DFGkTW~vYrYFAyDC~asFPGv~~~~~ 182 (1758)
T KOG0994|consen 109 ITWWQSENGV------ENVTIQLDLEAEFHFTHLIMTFKTFRPAAMLIERSSDFGKTWHVYRYFAYDCSATFPGVPTGPP 182 (1758)
T ss_pred cchhhcccCC------CcceEEeehhhheeeeeeeEeeccCCcceeeeeecccccccceeeeeeecccccCCCCCCCCCc
Confidence 5899999765 3799999999999999999999999999999999999999999999999999999955455444
Q ss_pred CCCCCCCceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCcccccC-Ccccccee
Q psy15469 149 KANDSDTRVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFL-DPSVLRSY 227 (297)
Q Consensus 149 ~~~~~~~~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~~~~~~-~~~~~~~~ 227 (297)
. .+++||||++||++.|+++|||+|++|.. +..+..+||+++|+.+++|||||.|+|++++||.+.+ .+....+|
T Consensus 183 k---k~~DviCtSrYS~~~PstgGEVifrvl~P-~~~iedPYs~~IQ~~LKITNLRvn~tklhtlgdnllD~r~E~~eky 258 (1758)
T KOG0994|consen 183 K---KWDDVICTSRYSDPEPSTGGEVIFRVLDP-AIDIEDPYSAKIQELLKITNLRVNFTKLHTLGDNLLDSREEIREKY 258 (1758)
T ss_pred c---cccceeeecccCCCCCCCCCeEEEEecCC-CCCCCCchhHHHHHHhhhhheeeeeEeeccccccccccccccccch
Confidence 3 45789999999999999999999999984 4556678999999999999999999999999998654 34567899
Q ss_pred eeeeeceeecccccCCCCCCCCCCcccC-----C---CCcceEecCCCCCCCCCCCcCCccCCCCCCCCCC-CCCCCCC
Q psy15469 228 FYAIADISVGARCKCNGHASECPYVRQS-----D---GSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRAS-DDANECR 297 (297)
Q Consensus 228 yYai~~i~v~g~C~CnGHA~~C~~~~~~-----~---~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a~-~~~n~C~ 297 (297)
||||++|.|.|+|+|+|||++|.|.+.. . .+.++.|.|+|||+|.|||+|+|+|||+||+||. .++|+|+
T Consensus 259 yYAiy~~vVrGsCfCyGHAs~C~P~~g~~s~~~~~ta~mVHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCr 337 (1758)
T KOG0994|consen 259 YYAIYDLVVRGSCFCYGHASQCAPVDGARSAKAPGTAHMVHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECR 337 (1758)
T ss_pred hheeeeeeeecceeecCchhhcccCCCCCcccCCCccceecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCccccc
Confidence 9999999999999999999999987542 1 2567899999999999999999999999999999 8999996
No 5
>KOG1836|consensus
Probab=100.00 E-value=3.7e-62 Score=529.03 Aligned_cols=287 Identities=47% Similarity=0.839 Sum_probs=261.0
Q ss_pred CCcCCCCccccccCCeeEEeccccCCCCCCCCCcceeecCCccCCc-ccccccCC----CCCCceeccCCCCceeEeccc
Q psy15469 2 DNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTAN-TCDYCYED----THPVRYLTDLSNTTTWWQSTT 76 (297)
Q Consensus 2 ~~~c~P~~~n~a~~~~~~a~sTCG~~~~~~~~e~yC~~~~~~~~~~-~C~~Cd~~----~Hp~~~~~D~~~~~twWQS~~ 76 (297)
+|+|.|+|.|+|+...++++.|||+ .++.||.+.+..+... .|..|++. .||+++|+|++..+|||||++
T Consensus 39 ~q~~~pe~~~aa~~~~~~~~~~cg~-----~~~~~c~~~~~~g~~~~~C~~C~~ag~~~~h~~~~~id~~~~~twwQS~~ 113 (1705)
T KOG1836|consen 39 QQASCPEFANAAGNLLATETNTCGL-----KGGGYCVPCNCNGHSNGYCVICNAAGEHCEHPASNLIDGAVGETWWQSPP 113 (1705)
T ss_pred ccccccccccccCCcceeEeccccC-----CCCCcCcccCCcCCCCCcceeCCCCCcccccCHhhhccCCcCCccccCCC
Confidence 5899999999999999999999998 4449999988776544 79999965 299999999876799999999
Q ss_pred cCCCCCCCCeeeEEEecCceEEEE-EEEEEEeCCCCCcEEEEEecCCCCCCeechhhHhhhhhhcCCCCCCCCCCCCCCC
Q psy15469 77 MYDGVQWPNQVNITLKFGKTFDVT-YVRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDT 155 (297)
Q Consensus 77 ~~~g~~~~~~V~itLdL~~~f~v~-~v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa~~C~~~f~~~~~~~~~~~~~~~ 155 (297)
+..|.+++ .|+++++|+++|++. ++++.|.||||++|+||||+|.+++|.||||||.+|...+..+....+....+++
T Consensus 114 l~~g~q~~-~~~~~~~~~g~~~~i~~~~~~~~sprp~s~~l~k~~~~~g~~~p~q~~s~s~~~~~~~~~~~~l~~~~~d~ 192 (1705)
T KOG1836|consen 114 LPEGHQYN-FVTNLTDLLGKFRIITVVRKKANSPRPESFGLYKSTDEDGPWCPWQFCSGSCRDCLSRPDRQALRGGENDD 192 (1705)
T ss_pred CCcccccc-hhhhhhhcCCeEEEEEeeeeccCCCCCccceeecccccCCCcCCceeecccCccccccCCcccccCCCCCc
Confidence 99999996 888888888777765 5666679999999999999999999999999999999999888888777765789
Q ss_pred ceeeecCCCCCCCCCCCceeEEecCCCCCcCCCCCcHhhHhhhhcceeEEEEeecccCc-----ccccCCccccceeeee
Q psy15469 156 RVFCTSEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFY-----DELFLDPSVLRSYFYA 230 (297)
Q Consensus 156 ~v~Ct~~ys~~~p~~~g~V~f~~l~~rp~~~~~~~s~~lqd~~tat~iRi~l~~~~~~~-----~~~~~~~~~~~~~yYa 230 (297)
.++||++||++.|+++|+|+|++|+|||++.+|+.||+||+|++||+|||+|+|++|++ ++++.||.++++||||
T Consensus 193 ~~~Ct~e~S~i~PL~ng~i~~s~l~grpsa~~f~~S~~L~ef~tat~ir~~l~r~~T~~~~l~~~~~~~dp~v~~~yyya 272 (1705)
T KOG1836|consen 193 AAICTTEFSDISPLENGEIAFSTLEGRPSAYNFETSPELQEFTTATNIRIRLQRLNTFGLHLMSDEIFKDPKVTRSYYYA 272 (1705)
T ss_pred cceeccccccCcccccchhhhhhhcCCCcccccCCCHHHHhhhccchhhhhhhhhcccchhhcchhhhcCCceeeeeeee
Confidence 99999999999999999999999999999999999999999999999999999999998 6677899999999999
Q ss_pred eeceeecccccCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCCCC-CCCCCCC
Q psy15469 231 IADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRAS-DDANECR 297 (297)
Q Consensus 231 i~~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a~-~~~n~C~ 297 (297)
|+||.|+|+|+|||||..|.... .....+|.|+|||.|..|++|.|+|+++||+++| ..++||+
T Consensus 273 isdi~vggrc~cnGha~~c~~~~---~~~~lvc~c~hNT~g~~ce~c~p~fn~rpw~~~ts~~~~Ec~ 337 (1705)
T KOG1836|consen 273 ISDISVGGRCKCNGHASECDESE---PQNLLVCRCQHNTCGLDCERCLPFFNDRPWARATSQTANECE 337 (1705)
T ss_pred HhhccccceEEEccchhhcCccc---CCccceeecccccccccccccccchhcchhhhhhhcccCcee
Confidence 99999999999999999998653 2233699999999999999999999999999999 9999984
No 6
>KOG0994|consensus
Probab=98.80 E-value=1.9e-09 Score=113.05 Aligned_cols=61 Identities=36% Similarity=0.929 Sum_probs=49.5
Q ss_pred ecccccCCCCCCCCCCcccC----CCCcceEe-cCCCCCCCCCCCcCCccCCCCCCCCCCCCCCCCC
Q psy15469 236 VGARCKCNGHASECPYVRQS----DGSTRRVC-RCEHNTAGPDCNECAPFYNDAPWRRASDDANECR 297 (297)
Q Consensus 236 v~g~C~CnGHA~~C~~~~~~----~~~~~~~C-~C~HnT~G~~Ce~C~p~y~~~Pw~~a~~~~n~C~ 297 (297)
-+..|.|||||.+|.++... ...+.|+| +|+|||.|.+||+|+|+|+++|.+.. ..++.|+
T Consensus 335 eCrkC~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i-~~p~vC~ 400 (1758)
T KOG0994|consen 335 ECRKCECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRRDI-SDPDVCK 400 (1758)
T ss_pred cccccCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCCCC-CCccccc
Confidence 46689999999999986422 34567899 59999999999999999999999865 4555553
No 7
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.35 E-value=5.4e-07 Score=62.76 Aligned_cols=42 Identities=43% Similarity=0.988 Sum_probs=37.4
Q ss_pred cccCCCCCC---CCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCC
Q psy15469 239 RCKCNGHAS---ECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWR 287 (297)
Q Consensus 239 ~C~CnGHA~---~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~ 287 (297)
.|.|++|++ .|.. ..++|.|++++.|.+|++|.++|++.||+
T Consensus 1 ~C~C~~~g~~~~~C~~-------~~G~C~C~~~~~G~~C~~C~~g~~~~~~~ 45 (50)
T cd00055 1 PCDCNGHGSLSGQCDP-------GTGQCECKPNTTGRRCDRCAPGYYGLPSQ 45 (50)
T ss_pred CCcCcCCCCCCccccC-------CCCEEeCCCcCCCCCCCCCCCCCccCCCC
Confidence 489999998 7863 36889999999999999999999999986
No 8
>KOG3512|consensus
Probab=98.29 E-value=3.5e-07 Score=89.28 Aligned_cols=59 Identities=31% Similarity=0.636 Sum_probs=48.0
Q ss_pred eceeecccccCCCCCCCCCCcccC----CCCcceEe-cCCCCCCCCCCCcCCccCCCCCCCCCC
Q psy15469 232 ADISVGARCKCNGHASECPYVRQS----DGSTRRVC-RCEHNTAGPDCNECAPFYNDAPWRRAS 290 (297)
Q Consensus 232 ~~i~v~g~C~CnGHA~~C~~~~~~----~~~~~~~C-~C~HnT~G~~Ce~C~p~y~~~Pw~~a~ 290 (297)
-++.-+..|.||+||.+|.+.... .+.+.++| .|+|||+|.||+.|+.+|++++-+|-+
T Consensus 326 ~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~ 389 (592)
T KOG3512|consen 326 LPANECVACNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLT 389 (592)
T ss_pred CCCccccccccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCc
Confidence 345556789999999999875321 34556899 699999999999999999999888776
No 9
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.14 E-value=7.9e-07 Score=61.50 Aligned_cols=42 Identities=36% Similarity=0.895 Sum_probs=34.7
Q ss_pred ccCCCCC---CCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCC
Q psy15469 240 CKCNGHA---SECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRR 288 (297)
Q Consensus 240 C~CnGHA---~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~ 288 (297)
|.|++|+ ..|.+ ..++|.|++|++|++|++|+++|++.|+.+
T Consensus 1 C~C~~~~~~~~~C~~-------~~G~C~C~~~~~G~~C~~C~~g~~~~~~~~ 45 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDP-------STGQCVCKPGTTGPRCDQCKPGYFGLPSDP 45 (49)
T ss_dssp ESSTTCCBCCSSEEE-------TCEEESBSTTEESTTS-EE-TTEECSTTSG
T ss_pred CcCcCCCCCCCcccC-------CCCEEeccccccCCcCcCCCCccccccCCC
Confidence 7899998 67763 368999999999999999999999999854
No 10
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=97.93 E-value=1e-05 Score=55.40 Aligned_cols=37 Identities=38% Similarity=0.964 Sum_probs=32.1
Q ss_pred ccCC--CCC-CCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCC
Q psy15469 240 CKCN--GHA-SECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYND 283 (297)
Q Consensus 240 C~Cn--GHA-~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~ 283 (297)
|.|+ |++ ..|... .++|.|++++.|++|++|+++|++
T Consensus 1 C~C~~~G~~~~~C~~~-------~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPD-------TGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCC-------CCEEECCCCCCCCCCCcCCCCcCC
Confidence 7888 887 678632 578999999999999999999998
No 11
>PF00754 F5_F8_type_C: F5/8 type C domain; InterPro: IPR000421 Blood coagulation factors V and VIII contain a C-terminal, twice repeated, domain of about 150 amino acids, which is called F5/8 type C, FA58C, or C1/C2- like domain. In the Dictyostelium discoideum (Slime mold) cell adhesion protein discoidin, a related domain, named discoidin I-like domain, DLD, or DS, has been found which shares a common C-terminal region of about 110 amino acids with the FA58C domain, but whose N-terminal 40 amino acids are much less conserved. Similar domains have been detected in other extracellular and membrane proteins [, , ] In coagulation factors V and VIII the repeated domains compose part of a larger functional domain which promotes binding to anionic phospholipids on the surface of platelets and endothelial cells []. The C-terminal domain of the second FA58C repeat (C2) of coagulation factor VIII has been shown to be responsible for phosphatidylserine-binding and essential for activity [, ]. It forms an amphipathic alpha-helix, which binds to the membrane []. FA58C contains two conserved cysteines in most proteins, which link the extremities of the domain by a disulphide bond [, , ]. A further disulphide bond is located near the C-terminal of the second FA58C domain in MFGM Q08431 from SWISSPROT []. +------------------------------------------------------------------------+ | +-+ | | | | | CxPLGxxQITASxxxxxRLxxxWxxxxWxxxxxxQGxxxxxxxxxxxxGNxxxxxxxxxxRxPxcxcLRxExGC 'C': conserved cysteine involved in a disulphide bond. 'c': cysteine involved in a disulphide bond in MFGM Q08431 from SWISSPROT. 'x': any amino acid. upper case letters: conserved residues. ; GO: 0007155 cell adhesion; PDB: 2J22_A 3CQO_C 1SDD_B 2VCA_A 2VC9_A 2VCC_A 2VCB_A 2J1E_A 2J7M_A 2J1A_A ....
Probab=97.37 E-value=0.00038 Score=55.38 Aligned_cols=66 Identities=26% Similarity=0.422 Sum_probs=54.0
Q ss_pred CCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEeCC----CCCcEEEEEecCCCCCCeechh
Q psy15469 58 PVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSP----RPESFAIYKKTYENSSWTPFQF 131 (297)
Q Consensus 58 p~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~sp----rP~sm~ieks~d~G~tW~p~qy 131 (297)
++++++|.+ ..|+|.+... . ....|+|||++.+.|..|.|.+... +|..+.|+-| ++|.+|+++.=
T Consensus 16 ~~~~~~Dg~-~~t~W~~~~~----~--~~~~i~idl~~~~~i~~i~i~~~~~~~~~~~~~~~i~~s-~dg~~w~~~~~ 85 (129)
T PF00754_consen 16 PASNAFDGD-PSTAWCSNWD----D--SPQWIQIDLGKPYTISGISIQFRNDGNNGRPKSFKIEYS-NDGSNWTTVAS 85 (129)
T ss_dssp GGGGGGSSS-TTSSEEESSS----S--STEEEEEEEEEEEEEEEEEEEEESSTTTEEEEEEEEEEE-SSSSSEEEEEE
T ss_pred hHHheEeCC-CCCEEECCCC----C--CCceEEEEeeeeEecceeeecccccccceeeeeeeeeee-ccccccccccc
Confidence 589999975 6899999741 1 2468999999999999999999654 8999999887 55688988763
No 12
>KOG1836|consensus
Probab=97.08 E-value=0.00038 Score=78.40 Aligned_cols=57 Identities=26% Similarity=0.584 Sum_probs=47.0
Q ss_pred eeeeeeeceeecccccCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccCCCCCCCCC
Q psy15469 226 SYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA 289 (297)
Q Consensus 226 ~~yYai~~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y~~~Pw~~a 289 (297)
+-.+...++..+..|.||||+..|.+ .+|.|.|+|||.|++|++|+++|++.|....
T Consensus 717 r~~~~~~~~~~c~~C~cngh~~~Cd~-------~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~ 773 (1705)
T KOG1836|consen 717 RLSPQLGPFCPCIPCDCNGHSNICDP-------RTGQCKCKHNTFGGQCAQCVDGFYGLPDLGT 773 (1705)
T ss_pred cccccCCCCCcccccccCCccccccC-------CCCceecccCCCCCchhhhcCCCCCccccCC
Confidence 33445666666778999999999984 3688999999999999999999999887643
No 13
>cd00057 FA58C Substituted updates: Jan 31, 2002
Probab=96.67 E-value=0.0048 Score=50.60 Aligned_cols=65 Identities=17% Similarity=0.213 Sum_probs=51.1
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEe-----CCCCCcEEEEEecCCCCCCeech
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFW-----SPRPESFAIYKKTYENSSWTPFQ 130 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~-----sprP~sm~ieks~d~G~tW~p~q 130 (297)
+.++.+ |.+ ..|+|.+.... ...-|+|||++.+.|+.|.|+.. +.++..+.|+-|.| |.+|+++.
T Consensus 24 ~~~~~~-dg~-~~t~W~~~~~~------~~~wi~vDL~~~~~i~~v~i~~~~~~~~~~~~~~~~i~~s~d-g~~W~~~~ 93 (143)
T cd00057 24 WEASRA-RLN-SDNAWTPAVND------PPQWLQVDLGKTRRVTGIQTQGRKGGGSSEWVTSYKVQYSLD-GETWTTYK 93 (143)
T ss_pred CCcCee-ecC-CCCcccCCCCC------CCceEEEECCCCEEEEEEEEccCCCCCccCeeEEEEEEEECC-CCCEeEEE
Confidence 577888 874 47899887431 13579999999999999999983 45788899988766 89999863
No 14
>PF02012 BNR: BNR/Asp-box repeat; InterPro: IPR002860 Members of this entry contain multiple BNR (bacterial neuraminidase repeat) repeats or Asp-boxes. The repeats are short, however the repeats are never found closer than 40 residues together suggesting that the repeat is structurally longer. These repeats are found in a variety of non-homologous proteins, including bacterial ribonucleases, sulphite oxidases, reelin, netrins, sialidases, neuraminidases, some lipoprotein receptors, and a variety of glycosyl hydrolases [].; PDB: 2JKB_A 2VW0_A 2VW2_A 2VW1_A 2CN2_D 2CN3_B 2VK7_B 2VK5_A 2VK6_A 2BF6_A ....
Probab=93.83 E-value=0.048 Score=27.05 Aligned_cols=12 Identities=25% Similarity=0.567 Sum_probs=9.5
Q ss_pred EEecCCCCCCee
Q psy15469 117 YKKTYENSSWTP 128 (297)
Q Consensus 117 eks~d~G~tW~p 128 (297)
++|.|.|+||++
T Consensus 1 ~~S~D~G~TW~~ 12 (12)
T PF02012_consen 1 YYSTDGGKTWKK 12 (12)
T ss_dssp EEESSTTSS-EE
T ss_pred CEeCCCcccCcC
Confidence 479999999985
No 15
>cd08366 APC10 APC10 subunit of the anaphase-promoting complex (APC) that mediates substrate ubiquitination. This model represents the single domain protein APC10, a subunit of the anaphase-promoting complex (APC), which is a multi-subunit E3 ubiquitin ligase. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a vital component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC (also known as the cyclosome), is a cell cycle-regulated E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. In mitosis, the APC initiates sister chromatid separation by ubiquitinating the anaphase inhibitor securin and triggers exit from mitosis by ubiquitinating cyclin B. The C-terminus of APC10 binds to CDC27/APC3, an APC subunit that contains multiple tetratrico peptide repeats. APC10 domains are homologous to the DOC1 domains present in the
Probab=93.79 E-value=0.15 Score=43.04 Aligned_cols=54 Identities=35% Similarity=0.498 Sum_probs=39.4
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE-----eCCCCCcEEEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF-----WSPRPESFAIYK 118 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F-----~sprP~sm~iek 118 (297)
+.+..|+|. +++|+|||. |.+ | =.|+|.+.+...|..|.|-+ .|..|..++|.-
T Consensus 18 ~gv~~L~D~-~~~TyWQSD----g~q-P--H~I~i~f~k~~~i~~l~i~vd~~~DeSYtP~~I~v~~ 76 (139)
T cd08366 18 NGVDQLRDD-SLDTYWQSD----GPQ-P--HLINIQFSKKTDISAVALYLDYKLDESYTPSKISIRA 76 (139)
T ss_pred CCHHHhcCC-CCCccCCCC----CCC-C--EEEEEEecCCcEEEEEEEEEccCCCCCCCCEEEEEEE
Confidence 578899995 479999995 444 4 36666777888888766655 378888887744
No 16
>cd08667 APC10-ZZEF1 APC10/DOC1-like domain of uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) and homologs. This model represents the APC10/DOC1-like domain present in the uncharacterized Zinc finger ZZ-type and EF-hand domain-containing protein 1 (ZZEF1) of Mus musculus. Members of this family contain EF-hand, APC10, CUB, and zinc finger ZZ-type domains. ZZEF1-like APC10 domains are homologous to the APC10 subunit/DOC1 domains present in E3 ubiquitin ligases, which mediate substrate ubiquitination (or ubiquitylation), and are components of the ubiquitin-26S proteasome pathway for selective proteolytic degradation.
Probab=93.30 E-value=0.2 Score=41.99 Aligned_cols=54 Identities=24% Similarity=0.332 Sum_probs=40.2
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEe----CCCCCcEEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFW----SPRPESFAIY 117 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~----sprP~sm~ie 117 (297)
+.++.|.|. +..|+|||. |.+.|. .|+|.+.+...|..|.|... |..|.-+.|.
T Consensus 14 ~gv~~L~D~-~~~TYWQSD----G~q~pH--~I~i~f~~~v~i~~l~i~v~~~DeSYtPs~I~I~ 71 (131)
T cd08667 14 ADIDRMTDG-ETSTYWQSD----GSARSH--WIRLKMKPDVVLRHLSIAVAATDQSYMPQQVTVS 71 (131)
T ss_pred hhhHHhhcC-CCCccCccC----CCCCCe--EEEEEecCCeEEEEEEEEEcCCCCCcCCcEEEEE
Confidence 466788895 469999997 444343 67788889888888777763 7788877773
No 17
>cd08666 APC10-HECTD3 APC10-like DOC1 domain of HECTD3, a HECT E3 ubiquitin ligase protein that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in HECTD3, a HECT (Homologous to the E6-AP Carboxyl Terminus) E3 ubiquitin ligase protein. HECT E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), and are a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. They also regulate the trafficking of many receptors, channels, transporters and viral proteins. HECTD3 (HECT domain-containing protein3) contains a C-terminal HECT domain with the active site for ubiquitin transfer onto substrates, and an N-terminal APC10/DOC1 domain, which is responsible for substrate recognition and binding. HECTD3 specifically recognizes the Trio-binding protein, Tara (Trio-associated repeat on actin), implicated in regulating actin cytoskeletal, cell motility and cell growth. Tara also binds to TRF1 and may participate i
Probab=92.96 E-value=0.23 Score=41.69 Aligned_cols=54 Identities=30% Similarity=0.363 Sum_probs=36.8
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE----eCCCCCcEEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF----WSPRPESFAIY 117 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F----~sprP~sm~ie 117 (297)
+.+..|.|. +..|+|||. |.+-|. .|+|.+.+.-.|..|.|.. .|..|.-++|.
T Consensus 19 ~gv~~L~D~-~~~tyWQSd----G~qgpH--~I~l~f~~~v~i~~l~i~v~~~DeSYtP~~I~V~ 76 (134)
T cd08666 19 FNVSCLTDG-DPDTYWESD----GSQGQH--WIRLHMKKGTIIKKLLLTVDATDDNYMPKRVAVY 76 (134)
T ss_pred CCHHHhccC-CCCccEecC----CCCCCe--EEEEEECCCcEeeEEEEEecCCCCCcCCcEEEEE
Confidence 477889996 469999996 334233 5666676666676666654 47788877773
No 18
>cd08365 APC10-like1 APC10-like DOC1 domains of E3 ubiquitin ligases that mediate substrate ubiquitination. This model represens the APC10-like DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. APC10/DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included here. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling a SCF-ROC1-like E3 ubiquitin ligase complex consisting of Skp1, CUL7, Fbx29 F-box protein, and ROC1 (RING-box protein 1) and promotes ubiquitination. CUL7 is a multi-domain protein with a C-terminal cullin domain that binds ROC1 and a centrally positioned APC10/DOC1 domain. HECTD3 contains a C-te
Probab=92.70 E-value=0.27 Score=41.12 Aligned_cols=54 Identities=33% Similarity=0.347 Sum_probs=39.7
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE----eCCCCCcEEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF----WSPRPESFAIY 117 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F----~sprP~sm~ie 117 (297)
|.++.|.|. +..|+|||. |.|.|. .|+|.+.+.-.|..|.|.+ .|..|.-+.|.
T Consensus 15 ~gv~~L~D~-~~~tyWQSD----G~q~pH--~I~i~f~k~v~i~~l~l~vd~~DeSYtP~~I~V~ 72 (131)
T cd08365 15 ADASRLTDG-NTSTYWQSD----GSQGSH--WIRLKMKPDVLVRHLSLAVDATDSSYMPQRVVVA 72 (131)
T ss_pred hhHHHhhcC-CCCceEccC----CCCCCE--EEEEEEcCCcEEEEEEEEecCCCCCCCCcEEEEE
Confidence 567888895 469999997 444333 7778888888888877776 47778877773
No 19
>KOG3437|consensus
Probab=91.57 E-value=0.42 Score=41.82 Aligned_cols=66 Identities=33% Similarity=0.548 Sum_probs=43.1
Q ss_pred CCCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEE--E---eCCCCCcEEEEEecCCCCCCeech
Q psy15469 56 THPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLL--F---WSPRPESFAIYKKTYENSSWTPFQ 130 (297)
Q Consensus 56 ~Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~--F---~sprP~sm~ieks~d~G~tW~p~q 130 (297)
-||+..|.|. +++|+|||. |.+ |..++|+++ |.-.|.+|.|. | .|.-|.-+-|. -|....-++
T Consensus 36 g~pvd~l~Dd-n~etyWqSd----G~~-PH~i~I~F~--K~~~I~~v~if~~f~~DeSYtPs~i~I~----~G~g~~dl~ 103 (184)
T KOG3437|consen 36 GFPVDNLRDD-NPETYWQSD----GSQ-PHLINIQFH--KRVDIQYVVIFLDFKQDESYTPSKIKIR----AGNGFNDLW 103 (184)
T ss_pred CCChHHhhcC-ChhHheecC----CCC-CeEEEEEEE--eEEEEEEEEEEEEEecccccCceeEEEE----ecCChhhee
Confidence 3999999995 479999997 333 456776665 55555555554 4 37888877662 344455555
Q ss_pred hhH
Q psy15469 131 FYS 133 (297)
Q Consensus 131 yfa 133 (297)
|..
T Consensus 104 ~~~ 106 (184)
T KOG3437|consen 104 EIQ 106 (184)
T ss_pred eee
Confidence 543
No 20
>cd08159 APC10-like APC10-like DOC1 domains in E3 ubiquitin ligases that mediate substrate ubiquitination. This family contains the single domain protein, APC10, a subunit of the anaphase-promoting complex (APC), as well as the DOC1 domain of multi-domain proteins present in E3 ubiquitin ligases. E3 ubiquitin ligases mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. The APC, a multi-protein complex (or cyclosome), is a cell cycle-regulated, E3 ubiquitin ligase that controls important transitions in mitosis and the G1 phase by ubiquitinating regulatory proteins, thereby targeting them for degradation. APC10-like DOC1 domains such as those present in HECT (Homologous to the E6-AP Carboxyl Terminus) and Cullin-RING (Really Interesting New Gene) E3 ubiquitin ligase proteins, HECTD3, and CUL7, respectively, are also included in this hierarchy. CUL7 is a member of the Cullin-RING ligase family and f
Probab=91.56 E-value=0.42 Score=39.86 Aligned_cols=54 Identities=33% Similarity=0.408 Sum_probs=39.9
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE----eCCCCCcEEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF----WSPRPESFAIY 117 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F----~sprP~sm~ie 117 (297)
+.+..|.|. +++|+|||. |.| | .--|+|.+.+.-.|..|.|.+ .|..|.-+.|.
T Consensus 14 ~gv~~L~D~-~~~tyWQSd----G~q-p-hh~i~l~f~k~v~i~~l~i~~~~~DeSYtP~~I~V~ 71 (129)
T cd08159 14 LPVSRLTDG-NYDTYWQSD----GSQ-G-SHWIRLFMKKDVLIRVLAIFVDMADSSYMPSLVVVY 71 (129)
T ss_pred ccHHHhcCC-CCCccCCCC----CCC-C-CEEEEEEEcCCcEEEEEEEEecCCCCCcCCcEEEEE
Confidence 467889995 469999997 333 2 245778888878888888877 47788888774
No 21
>cd08665 APC10-CUL7 APC10-like DOC1 domain of CUL7, subunit of the SCF-ROC1-like E3 ubiquitin ligase complex that mediates substrate ubiquitination. This model represents the APC10/DOC1 domain present in CUL7, a subunit of the SCF-ROC1-like E3 Ubiquitin (Ub) ligase complex, which mediates substrate ubiquitination (or ubiquitylation), and is a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. CUL7 is a member of the Cullin-RING ligase family and functions as a molecular scaffold assembling the SCF-ROC1-like E3 Ub ligase complex consisting of the adapter protein Skp1, CUL7, the WD40 repeat-containing F-box Fbw8 (also known as Fbx29), and ROC1 (RING-box protein 1). CUL7 is a large protein with a C-terminal cullin domain that binds ROC1 and additional domains, including an APC10/DOC1 domain. While the Fbw8 protein is responsible for substrate protein recognition, the ROC1 RING domain recruits an Ub-charged E2 Ub-conjugating enzyme for substrate ubiqui
Probab=90.95 E-value=0.71 Score=38.64 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=38.4
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE----eCCCCCcEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF----WSPRPESFAI 116 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F----~sprP~sm~i 116 (297)
|-+..|.|. +..|+|||. |.+.| =.|+|.+.+.-.|..|.|.. .|.-|.-++|
T Consensus 14 ~~~~~L~D~-~~~tyWQSd----G~q~p--H~I~i~f~k~v~I~~l~i~v~~~DeSYtPs~I~V 70 (131)
T cd08665 14 HRANKLTDG-NPKTYWESN----GSTGS--HYINIHMHRGVVIRQLYMLVASEDSSYMPARVVV 70 (131)
T ss_pred ccHHHhhcC-CCCceEccC----CCCCC--eEEEEEECCCcEEEEEEEEecCCCCCcCCeeEEE
Confidence 677889996 469999997 43333 36667788877787777766 3677887777
No 22
>PF03256 APC10: Anaphase-promoting complex, subunit 10 (APC10); InterPro: IPR004939 The anaphase-promoting complex (APC) or cyclosome is a multi-subunit E3 protein ubiquitin ligase that regulates important events in mitosis such as the initiation of anaphase and exit from telophase. The APC, in conjunction with other enzymes, assembles multi-ubiquitin chains on a variety of regulatory proteins, thereby targeting them for proteolysis by the 26S proteasome. Anaphase is initiated when the APC triggers the destruction of securin, thereby allowing the protease, separase, to disrupt sister-chromatid cohesion. Securin ubiquitination by the APC is inhibited by cyclin-dependent kinase 1 (Cdk1)-dependent phosphorylation []. Forkhead Box M1 (FoxM1), which is a transcription factor that is over-expressed in many cancers, is degraded in late mitosis and early G1 phase by the APC/cyclosome (APC/C) E3 ubiquitin ligase []. The APC/C targets mitotic cyclins for destruction in mitosis and G1 phase and is then inactivated at S phase. It thereby generates alternating states of high and low cyclin-Cdk activity, which is required for the alternation of mitosis and DNA replication []. The APC/C is composed of at least 13 subunits that stay tightly associated throughout the cell cycle: APC1, APC2, APC4, APC5, APC9, APC11, CDC16, CDC23, CDC26, CDC27, DOC1, MND2 and SWM1[], []. In fission yeast the 13 subunits are known as: Apc1, Apc2, Nuc2, Apc4, Apc5, Cut9, Apc8, Apc10, Apc11, Hcn1, Apc13, Apc14 and Apc15 []. One of the subunits of the APC that is required for ubiquitination activity is APC10, a one-domain protein homologous to a sequence element, termed the DOC domain, found in several hypothetical proteins that may also mediate ubiquitination reactions, because they contain combinations of either RING finger (see PDOC00449 from PROSITEDOC), cullin (see PDOC00967 from PROSITEDOC) or HECT (see PDOC50237 from PROSITEDOC) domains [, , ]. The DOC domain consists of a beta-sandwich, in which a five-stranded antiparallel beta-sheet is packed on top of a three stranded antiparallel beta-sheet, exhibiting a 'jellyroll' fold [, ]. Proteins known to contain a DOC domain include: Eucaryotic Doc1/Apc10. Mammalian protein associated with the transcription factor Myc (PAM). Mouse runty-jerky-sterile (RJS) protein. Human HERC2, the ortholog of RJS. ; PDB: 1GQP_B 1JHJ_A.
Probab=90.69 E-value=0.46 Score=42.31 Aligned_cols=55 Identities=31% Similarity=0.436 Sum_probs=36.3
Q ss_pred CCCc-eeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE-----eCCCCCcEEEEEe
Q psy15469 57 HPVR-YLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF-----WSPRPESFAIYKK 119 (297)
Q Consensus 57 Hp~~-~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F-----~sprP~sm~ieks 119 (297)
+.+. .|+|. +.+|+|||. |.+ | =.|+|.+.+.-.|..|.|-+ .|..|..++|.--
T Consensus 45 ~gv~~~LrD~-~~~TyWQSD----G~q-p--H~I~i~f~k~v~I~~l~iyvd~~~DeSYtPs~I~V~aG 105 (193)
T PF03256_consen 45 FGVAELLRDG-STETYWQSD----GSQ-P--HWITIQFHKRVIISSLSIYVDYKQDESYTPSKISVRAG 105 (193)
T ss_dssp BSCHGHCHSS--TT--EE------SSS-S--EEEEEEEEEEEEE-EEEEEEEHHHHGGGSEEEEEEEEE
T ss_pred CCchheeeCC-ChhHhhccC----CCC-C--EEEEEEEcCCcEEEEEEEEEccCcCCCCCceEEEEEEe
Confidence 5676 67785 479999995 434 3 47888888888888877765 3889999988543
No 23
>KOG3509|consensus
Probab=88.12 E-value=0.31 Score=52.73 Aligned_cols=42 Identities=33% Similarity=0.690 Sum_probs=36.4
Q ss_pred cccCCCCCCCCCCcccCCCCcceEe-cCCCCCCCCCCCcCCccCCCCCCC
Q psy15469 239 RCKCNGHASECPYVRQSDGSTRRVC-RCEHNTAGPDCNECAPFYNDAPWR 287 (297)
Q Consensus 239 ~C~CnGHA~~C~~~~~~~~~~~~~C-~C~HnT~G~~Ce~C~p~y~~~Pw~ 287 (297)
.|.|++|++.|... .+.| +|+|||.|..|+.|.++|+.++.+
T Consensus 753 ~c~~~~h~~~c~~~-------~~~nt~~q~~~~~~~~~~~~~g~~~da~~ 795 (964)
T KOG3509|consen 753 DCECNSHISQCEDD-------LGYNTDCQNNTEGDRCELCSPGTYGDARR 795 (964)
T ss_pred ccccCCCccccccc-------ccccccccccCccceeeecCCCccccCcc
Confidence 69999999999832 4568 799999999999999999987764
No 24
>KOG1388|consensus
Probab=86.16 E-value=0.33 Score=43.72 Aligned_cols=39 Identities=36% Similarity=0.884 Sum_probs=32.7
Q ss_pred cccccCCCCCCCCCCcccCCCCcceEe-cCCCCCCCCCCCcCCccCCCC
Q psy15469 237 GARCKCNGHASECPYVRQSDGSTRRVC-RCEHNTAGPDCNECAPFYNDA 284 (297)
Q Consensus 237 ~g~C~CnGHA~~C~~~~~~~~~~~~~C-~C~HnT~G~~Ce~C~p~y~~~ 284 (297)
+-.|.||||..-+. .-+| .|+..|.|.+|++|..+|+.+
T Consensus 49 cP~~~cNGh~~c~t---------~~v~~~~~N~~~g~~c~kc~~g~~Gd 88 (217)
T KOG1388|consen 49 CPLCQCNGHSDCNT---------QHVCWRCENGTTGAHCEKCIVGFYGD 88 (217)
T ss_pred ChHHHhcCCCCccc---------ceeeeeccCccccccCCceEEEEEec
Confidence 44899999987764 3467 599999999999999999875
No 25
>COG5156 DOC1 Anaphase-promoting complex (APC), subunit 10 [Cell division and chromosome partitioning / Posttranslational modification, protein turnover, chaperones]
Probab=84.62 E-value=0.74 Score=39.65 Aligned_cols=52 Identities=38% Similarity=0.599 Sum_probs=39.2
Q ss_pred CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE-----eCCCCCcEEE
Q psy15469 57 HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF-----WSPRPESFAI 116 (297)
Q Consensus 57 Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F-----~sprP~sm~i 116 (297)
||...+.|. +-.|+|||. |.| .-+|.|.+.+.-.|.+|.|-| .|.-|.-+-|
T Consensus 41 ~p~r~~ldd-n~dtyWqsD----g~q---PH~i~I~F~kr~~I~~v~lfls~t~DeSYtPs~i~v 97 (189)
T COG5156 41 HPLRELLDD-NMDTYWQSD----GVQ---PHSIQISFDKRRYIQSVQLFLSFTQDESYTPSKIGV 97 (189)
T ss_pred CcHHHHhhc-chhhhhccC----CCC---CceEEEEEeEEEeeeeehhhhhhhcccccCcceeEE
Confidence 999999985 459999997 444 358999999988888766554 3667766655
No 26
>cd08664 APC10-HERC2 APC10-like DOC1 domain present in HERC2 (HECT domain and RLD2). This model represents the APC10/DOC1 domain present in HERC2 (HECT domain and RLD2), a large multi-domain protein with three RCC1-like domains (RLDs), additional internal domains including a zinc finger ZZ-type and Cyt-b5 (Cytochrome b5-like Heme/Steroid binding) domains, and a C-terminal HECT (Homologous to the E6-AP Carboxyl Terminus) domain. The APC10/DOC1 domain of HERC2 is a homolog of the APC10 subunit and the DOC1 domain present in E3 ubiquitin ligases which mediate substrate ubiquitination (or ubiquitylation), a component of the ubiquitin-26S proteasome pathway for selective proteolytic degradation. As suggested by structural relationships between HERC2 and other proteins such as HERC1, the proposed role for HERC2 in protein trafficking and degradation pathways is consistent with observations that mutations in HERC2 lead to neuromuscular secretory vesicle and sperm acrosome defects, other develo
Probab=83.55 E-value=3.4 Score=35.41 Aligned_cols=53 Identities=21% Similarity=0.302 Sum_probs=37.7
Q ss_pred CCCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEe----CCCCCcEEE
Q psy15469 56 THPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFW----SPRPESFAI 116 (297)
Q Consensus 56 ~Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~----sprP~sm~i 116 (297)
.|-++.|.|. ..|+|||. |.+.+ =-|+|.|.+.-.|..|.|... |..|.-++|
T Consensus 37 ~~~~~~L~D~--~~TYWQSd----G~q~~--HwI~l~~~~~v~I~~L~i~vd~~DeSY~Ps~I~V 93 (152)
T cd08664 37 ENQAKRLIDG--SGSYWQSS----GSQGK--HWIRLELHPDVLIHSLKIIVDPADSSYMPSLVVV 93 (152)
T ss_pred cccHHHhcCC--CCCeeccC----CCCCc--eEEEEEECCCcEEEEEEEEecCCCCCcCCceEEE
Confidence 3788999996 68999997 33322 356666777778888887774 556666666
No 27
>KOG4260|consensus
Probab=78.32 E-value=2.4 Score=39.78 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=47.4
Q ss_pred CcHhhHhhhhcceeEEEEeecccCcccccCCccccceeeeeeeceeecccccCCCCCCCCCCcccCCCCcceEecCCCCC
Q psy15469 190 YNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNT 269 (297)
Q Consensus 190 ~s~~lqd~~tat~iRi~l~~~~~~~~~~~~~~~~~~~~yYai~~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~HnT 269 (297)
.+|.|++|+-+..|.|=- -+.|+|.+-..=|.... ..|.-|||..- +- .+.+.|.|.|+-..
T Consensus 115 e~Pdl~~WlCvdqLkvCC-p~gtyGpdCl~Cpggse------------r~C~GnG~C~G---dG--sR~GsGkCkC~~GY 176 (350)
T KOG4260|consen 115 ESPDLFNWLCVDQLKVCC-PDGTYGPDCLQCPGGSE------------RPCFGNGSCHG---DG--SREGSGKCKCETGY 176 (350)
T ss_pred CCchHHhHhhhhhheecc-CCCCcCCccccCCCCCc------------CCcCCCCcccC---CC--CCCCCCcccccCCC
Confidence 478999999998887743 23444432111111100 12444444322 11 24567889999999
Q ss_pred CCCCCCcCCccCCC
Q psy15469 270 AGPDCNECAPFYND 283 (297)
Q Consensus 270 ~G~~Ce~C~p~y~~ 283 (297)
+|+.|..|.+.|+-
T Consensus 177 ~Gp~C~~Cg~eyfe 190 (350)
T KOG4260|consen 177 TGPLCRYCGIEYFE 190 (350)
T ss_pred CCccccccchHHHH
Confidence 99999999999984
No 28
>smart00231 FA58C Coagulation factor 5/8 C-terminal domain, discoidin domain. Cell surface-attached carbohydrate-binding domain, present in eukaryotes and assumed to have horizontally transferred to eubacterial genomes.
Probab=66.36 E-value=8.7 Score=31.46 Aligned_cols=43 Identities=23% Similarity=0.232 Sum_probs=28.1
Q ss_pred eeEEEecCceEEEEEEEEEEeCCCCCcEEEEE--ecCCCCCCeech
Q psy15469 87 VNITLKFGKTFDVTYVRLLFWSPRPESFAIYK--KTYENSSWTPFQ 130 (297)
Q Consensus 87 V~itLdL~~~f~v~~v~l~F~sprP~sm~iek--s~d~G~tW~p~q 130 (297)
--|+|||++.+.|+-|.++..... ..++.+. -+++|.+|.++.
T Consensus 45 ~wlqvDLg~~~~v~~i~~qg~~~~-~~~~~~~~~~s~dg~~W~~~~ 89 (139)
T smart00231 45 PWIQVDLGRTRTVTGVITGGRHGD-GDGVTYKLLYSDDGNNWTTYK 89 (139)
T ss_pred ceeEeeccCcEEEEEEEecccCCC-CcEEEEEEEEEeCCCCEeEEe
Confidence 479999999999999999862111 1233211 245677888764
No 29
>KOG4289|consensus
Probab=53.92 E-value=17 Score=41.59 Aligned_cols=27 Identities=22% Similarity=0.589 Sum_probs=21.7
Q ss_pred CCcceEecCCCCCCCCCCC------cCCccCCC
Q psy15469 257 GSTRRVCRCEHNTAGPDCN------ECAPFYND 283 (297)
Q Consensus 257 ~~~~~~C~C~HnT~G~~Ce------~C~p~y~~ 283 (297)
..+...|+|+...+|.||| +|.|++-.
T Consensus 1256 rEggYtCeCrpg~tGehCEvs~~agrCvpGvC~ 1288 (2531)
T KOG4289|consen 1256 REGGYTCECRPGFTGEHCEVSARAGRCVPGVCK 1288 (2531)
T ss_pred ecCceeEEecCCccccceeeecccCccccceec
Confidence 3456789999999999998 68887753
No 30
>PF01834 XRCC1_N: XRCC1 N terminal domain; InterPro: IPR002706 DNA-repair protein Xrcc1 functions in the repair of single-strand DNA breaks in mammalian cells and forms a repair complex with beta-Pol, ligase III and PARP []. The NMR solution structure of the Xrcc1 N-terminal domain (Xrcc1 NTD) shows that the structural core is a beta-sandwich with beta-strands connected by loops, three helices and two short two-stranded beta-sheets at each connection side. The Xrcc1 NTD specifically binds single-strand break DNA (gapped and nicked) and a gapped DNA-beta-Pol complex [].; GO: 0003684 damaged DNA binding, 0000012 single strand break repair, 0005634 nucleus; PDB: 3K77_E 3K75_C 3LQC_A 1XNA_A 1XNT_A.
Probab=51.97 E-value=8.9 Score=32.94 Aligned_cols=49 Identities=16% Similarity=0.239 Sum_probs=31.4
Q ss_pred ccCCC--CCCceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEE
Q psy15469 52 CYEDT--HPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLF 106 (297)
Q Consensus 52 Cd~~~--Hp~~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F 106 (297)
|-+++ ||+++|.+.+....|+-+..+. ..+.|-|.|++.-+|++|-|-=
T Consensus 12 ~SSed~~~~A~NLL~~d~~r~W~~~~~ge------k~~~V~lQl~~~~~I~~IDIGN 62 (153)
T PF01834_consen 12 FSSEDPVHPAENLLKSDTYRKWKCAKAGE------KQASVELQLEKASQITSIDIGN 62 (153)
T ss_dssp ESSS-SSSHGGGGSCGGGCHHEEHSSTT-------SEEEEEEEEEEEE--SEEEEEE
T ss_pred EeCCCCCCchhhccCcccCCcccccCCCC------ceEEEEEEecCceEEEEEeccC
Confidence 44443 9999999875446766554331 2567888888888888887764
No 31
>cd02847 Chitobiase_C_term Chitobiase C-terminus domain. Chitobiase (AKA N-acetylglucosaminidase) digests the beta, 1-4 glycosidic bonds of the N-acetylglucosamine (NAG) oligomers found in chitin, an important structural element of fungal cell wall and arthropod exoskeletons. It is thought to proceed through an acid-base reaction mechanism, in which one protein carboxylate acts as catalytic acid, while the nucleophile is the polar acetamido group of the sugar in a substrate-assisted reaction with retention of the anomeric configuration. The C-terminus of chitobiase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chit
Probab=47.68 E-value=31 Score=26.18 Aligned_cols=32 Identities=16% Similarity=0.263 Sum_probs=24.5
Q ss_pred EEEEEEEEEeCCCCCcEEEEEecCCCCCCeech
Q psy15469 98 DVTYVRLLFWSPRPESFAIYKKTYENSSWTPFQ 130 (297)
Q Consensus 98 ~v~~v~l~F~sprP~sm~ieks~d~G~tW~p~q 130 (297)
.+..-.|..+.+.|. +.|+-+.|.|++|++|+
T Consensus 18 ~i~~g~l~~n~~~pg-~~i~Yt~dgg~~w~~Y~ 49 (78)
T cd02847 18 KVENGKLEMNVSLPG-LTLQYSTDGGKNWNIYD 49 (78)
T ss_pred EEEcCEEEEeccCCC-cEEEEEecCCccCeecc
Confidence 344566777778888 45888999999999965
No 32
>PF06219 DUF1005: Protein of unknown function (DUF1005); InterPro: IPR010410 This is a family of plant proteins with undetermined function.
Probab=46.20 E-value=13 Score=36.96 Aligned_cols=47 Identities=17% Similarity=0.219 Sum_probs=29.3
Q ss_pred eeeEEE-ecCc-----eEEEEEEEEEEe-----CCCCCcEEEEEecCCCCCCeechhhH
Q psy15469 86 QVNITL-KFGK-----TFDVTYVRLLFW-----SPRPESFAIYKKTYENSSWTPFQFYS 133 (297)
Q Consensus 86 ~V~itL-dL~~-----~f~v~~v~l~F~-----sprP~sm~ieks~d~G~tW~p~qyfa 133 (297)
.-.||| ||.. .+-||-.+=.-. .--|.+|+|.|-.-+| +|+||.-.-
T Consensus 246 GW~VtIHDLSGSPVAaASMvTPFVPSpGSDrVSRSNPGAWLILRP~~~g-sWkPWGRLE 303 (460)
T PF06219_consen 246 GWSVTIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGAWLILRPDGDG-SWKPWGRLE 303 (460)
T ss_pred CcEEEEEcCCCCHHHHhhhcCCccCCCCCCceeccCCCeEEEEecCCCC-Ccccchhhh
Confidence 367888 7865 344442221111 2259999998864444 999998664
No 33
>smart00607 FTP eel-Fucolectin Tachylectin-4 Pentaxrin-1 Domain.
Probab=41.49 E-value=72 Score=27.15 Aligned_cols=19 Identities=5% Similarity=0.003 Sum_probs=16.3
Q ss_pred EEEecCceEEEEEEEEEEe
Q psy15469 89 ITLKFGKTFDVTYVRLLFW 107 (297)
Q Consensus 89 itLdL~~~f~v~~v~l~F~ 107 (297)
-.+||++.|.|..|.|...
T Consensus 54 W~VDL~~~~~V~~V~I~NR 72 (151)
T smart00607 54 WRVDLLQYMTIHSVTITNR 72 (151)
T ss_pred EEEeCCCeEEeeEEEEecC
Confidence 3789999999999998664
No 34
>PF07738 Sad1_UNC: Sad1 / UNC-like C-terminal ; InterPro: IPR012919 The Caenorhabditis elegans UNC-84 protein is a nuclear envelope protein that is involved in nuclear anchoring and migration during development. The S. pombe Sad1 protein localises at the spindle pole body. UNC-84 and Sad1 share a common C-terminal region that is often termed the SUN (Sad1 and UNC) domain [, ]. In mammals, the SUN domain is present in two proteins, Sun1 and Sun2 []. The SUN domain of Sun2 has been demonstrated to be in the periplasm []. ; PDB: 4DXT_A 3UNP_A 4DXR_A 4DXS_A.
Probab=40.15 E-value=88 Score=25.46 Aligned_cols=54 Identities=17% Similarity=0.284 Sum_probs=36.4
Q ss_pred ceeEeccccCCCCCCCCeeeEEEecCceEEEEEEEEEEe-------CCCCCcEEEEEecCCCCC-Ceech
Q psy15469 69 TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFW-------SPRPESFAIYKKTYENSS-WTPFQ 130 (297)
Q Consensus 69 ~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~v~l~F~-------sprP~sm~ieks~d~G~t-W~p~q 130 (297)
..+|-.+ +. .-.|+|.|.+...|+.|.|... +-.|..|-|+-+.++... |..+.
T Consensus 22 g~Cw~~~-g~-------~~~~~I~L~~~I~v~~v~i~h~~~~~~~~sSapk~f~V~g~~~~~~~~~~~LG 83 (135)
T PF07738_consen 22 GPCWAFE-GS-------KGWLTIELSEPIYVTSVTIEHVEKSIAPFSSAPKDFEVWGSVDYPDEEWVLLG 83 (135)
T ss_dssp T-SEEEE-TT--------EEEEEEEEEEEEEEEEEEE---GGGSG-TTSB-EEEEEEESSSSTS--EEEE
T ss_pred CccCccC-CC-------ceEEEEEcCCcEEEEEEEEEEeccccCCcCCCCcEEEEEEEecccccceeeec
Confidence 7899554 22 4589999999999999999873 347777888887777655 66554
No 35
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=37.39 E-value=12 Score=18.80 Aligned_cols=13 Identities=38% Similarity=1.237 Sum_probs=8.8
Q ss_pred EecCCCCCCCCCC
Q psy15469 262 VCRCEHNTAGPDC 274 (297)
Q Consensus 262 ~C~C~HnT~G~~C 274 (297)
.|.|....+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 3777777777776
No 36
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=37.31 E-value=92 Score=27.88 Aligned_cols=18 Identities=28% Similarity=0.501 Sum_probs=14.9
Q ss_pred cEEEEEecCCCCCCeech
Q psy15469 113 SFAIYKKTYENSSWTPFQ 130 (297)
Q Consensus 113 sm~ieks~d~G~tW~p~q 130 (297)
.+.+.+|.|.|+||++.+
T Consensus 183 ~~~~~~S~D~G~TWs~~~ 200 (275)
T PF13088_consen 183 DIYISRSTDGGRTWSPPQ 200 (275)
T ss_dssp EEEEEEESSTTSS-EEEE
T ss_pred cEEEEEECCCCCcCCCce
Confidence 788999999999999943
No 37
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=30.43 E-value=11 Score=26.82 Aligned_cols=34 Identities=29% Similarity=0.681 Sum_probs=16.8
Q ss_pred cCCCCCCCCCCcccCCCCcceEecCCCCCCCCCCCc
Q psy15469 241 KCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNE 276 (297)
Q Consensus 241 ~CnGHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~ 276 (297)
.|.||...-+ ++....+...|+|..=..|++|..
T Consensus 18 ~CSGHGr~fl--Dg~~~dG~p~CECn~Cy~GpdCS~ 51 (56)
T PF04863_consen 18 SCSGHGRAFL--DGLIADGSPVCECNSCYGGPDCST 51 (56)
T ss_dssp --TTSEE--T--TS-EETTEE--EE-TTEESTTS-E
T ss_pred CcCCCCeeee--ccccccCCccccccCCcCCCCccc
Confidence 5777776643 322112346799988899999975
No 38
>PHA02887 EGF-like protein; Provisional
Probab=28.48 E-value=38 Score=27.93 Aligned_cols=26 Identities=27% Similarity=0.710 Sum_probs=19.6
Q ss_pred CCCCcccCCCCcceEecCCCCCCCCCCCc
Q psy15469 248 ECPYVRQSDGSTRRVCRCEHNTAGPDCNE 276 (297)
Q Consensus 248 ~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~ 276 (297)
.|.+.. ......|.|..+..|..||.
T Consensus 98 ~C~yI~---dL~epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 98 ECMNII---DLDEKFCICNKGYTGIRCDE 123 (126)
T ss_pred EEEccc---cCCCceeECCCCcccCCCCc
Confidence 565543 34567799999999999986
No 39
>PF13810 DUF4185: Domain of unknown function (DUF4185)
Probab=26.64 E-value=98 Score=29.54 Aligned_cols=39 Identities=21% Similarity=0.402 Sum_probs=29.3
Q ss_pred ecCceEEEEEEEEEEeCCCCCcE-----EEEEecCCCCCCeech
Q psy15469 92 KFGKTFDVTYVRLLFWSPRPESF-----AIYKKTYENSSWTPFQ 130 (297)
Q Consensus 92 dL~~~f~v~~v~l~F~sprP~sm-----~ieks~d~G~tW~p~q 130 (297)
.++.+-.|.+..++--.+.|..| .|.+|.|.|++|+...
T Consensus 102 ~v~~~~Yl~~msv~~wg~~~G~W~tn~S~i~~S~D~G~tW~~~~ 145 (316)
T PF13810_consen 102 SVGGRQYLHYMSVRNWGNVPGSWTTNYSGIAYSDDNGETWTVVP 145 (316)
T ss_pred EECCcEEEEEEEEccCCCCCCccccCceEEEEeCCCCCCceeCC
Confidence 55566667777776656656555 3889999999999887
No 40
>KOG4289|consensus
Probab=26.63 E-value=38 Score=38.92 Aligned_cols=47 Identities=21% Similarity=0.639 Sum_probs=31.9
Q ss_pred ceeeeeeeceeecccccCC--CCCCCCCCcccCCCCcceEecCCCCCCCCCCCcCCccC
Q psy15469 225 RSYFYAIADISVGARCKCN--GHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFY 281 (297)
Q Consensus 225 ~~~yYai~~i~v~g~C~Cn--GHA~~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~p~y 281 (297)
+..||..-.- |-.|.|. .|+..|. ..|+|.|+..-.|.+|++|..-|
T Consensus 1795 Ke~hy~~~~~--Cl~CdC~~Gs~Sr~C~--------adGqC~C~pgaiGRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1795 KENHYRPIGS--CLPCDCYFGSDSRECD--------ADGQCPCKPGAIGRQCDRCDNPF 1843 (2531)
T ss_pred ccccccCCCc--ceeeccccCCCccccc--------CCCcCCCCCccccccccccCChh
Confidence 4556653222 7778887 2233465 25789999999999999997433
No 41
>KOG4276|consensus
Probab=25.46 E-value=82 Score=25.25 Aligned_cols=48 Identities=13% Similarity=0.165 Sum_probs=35.0
Q ss_pred EEEecCceEEEEEEEEEEe--CCCCC--cEEEEEecCCCCCCeechhhHhhhh
Q psy15469 89 ITLKFGKTFDVTYVRLLFW--SPRPE--SFAIYKKTYENSSWTPFQFYSASCQ 137 (297)
Q Consensus 89 itLdL~~~f~v~~v~l~F~--sprP~--sm~ieks~d~G~tW~p~qyfa~~C~ 137 (297)
..||||-..+.+--.++|. ..|-+ .|.+.-| .+|++|+.+.---+||.
T Consensus 10 f~iDLG~~vip~~y~lrh~rgygRsalRnW~fQgS-~DgktWt~l~vH~DD~s 61 (113)
T KOG4276|consen 10 FAIDLGLEVIPTAYTLRHARGYGRSALRNWKFQGS-KDGKTWTDLRVHVDDKS 61 (113)
T ss_pred EEEecCceEeeeeeeeeecccccHHHhhheeeecc-ccCCcceeEEEEecccc
Confidence 4789999888888888883 33443 4878665 56999998876666654
No 42
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=25.22 E-value=39 Score=28.31 Aligned_cols=28 Identities=29% Similarity=0.692 Sum_probs=21.5
Q ss_pred CCCCcccCCCCcceEecCCCCCCCCCCCcCC
Q psy15469 248 ECPYVRQSDGSTRRVCRCEHNTAGPDCNECA 278 (297)
Q Consensus 248 ~C~~~~~~~~~~~~~C~C~HnT~G~~Ce~C~ 278 (297)
.|.+.. ......|.|..+..|..||.--
T Consensus 57 ~C~yI~---dl~~~~CrC~~GYtGeRCEh~d 84 (139)
T PHA03099 57 DCIHAR---DIDGMYCRCSHGYTGIRCQHVV 84 (139)
T ss_pred EEEeec---cCCCceeECCCCccccccccee
Confidence 576653 3456789999999999998744
No 43
>PF11280 DUF3081: Protein of unknown function (DUF3081); InterPro: IPR021432 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=24.48 E-value=73 Score=24.34 Aligned_cols=32 Identities=28% Similarity=0.488 Sum_probs=24.5
Q ss_pred ceeccCCCCceeEeccccCCCCCCCCeeeEEEecCceEEEEE
Q psy15469 60 RYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTY 101 (297)
Q Consensus 60 ~~~~D~~~~~twWQS~~~~~g~~~~~~V~itLdL~~~f~v~~ 101 (297)
+.-+|.+ .-|.|-+. +.|+|||-+-..|+|.|
T Consensus 31 ~A~~D~D-GYtv~L~~---------~~VtLtl~FHnty~~dy 62 (79)
T PF11280_consen 31 TAFSDFD-GYTVYLED---------NGVTLTLGFHNTYHLDY 62 (79)
T ss_pred EEEecCC-CcEEEEeC---------CCEEEEEEeccceecCC
Confidence 3445653 58889876 36999999999999875
No 44
>PF13088 BNR_2: BNR repeat-like domain; PDB: 2F11_A 2F0Z_A 1VCU_B 2F25_B 1SO7_A 2F29_A 1SNT_A 2F13_A 2F28_A 2F27_A ....
Probab=22.36 E-value=1.9e+02 Score=25.73 Aligned_cols=46 Identities=7% Similarity=-0.057 Sum_probs=25.1
Q ss_pred eEEEecCceEEEEE-EEEEEeCCCCCcEEEEEecCCCCCCeechhhH
Q psy15469 88 NITLKFGKTFDVTY-VRLLFWSPRPESFAIYKKTYENSSWTPFQFYS 133 (297)
Q Consensus 88 ~itLdL~~~f~v~~-v~l~F~sprP~sm~ieks~d~G~tW~p~qyfa 133 (297)
.|..+-.....|.+ +......-....+...+|.|+|+||....-..
T Consensus 52 ~~~~~~~g~l~l~~~~~~~~~~~~~~~~~~~~S~D~G~TWs~~~~l~ 98 (275)
T PF13088_consen 52 SLVVDPDGRLWLFYSAGSSGGGWSGSRIYYSRSTDGGKTWSEPTDLP 98 (275)
T ss_dssp EEEEETTSEEEEEEEEEETTESCCTCEEEEEEESSTTSS-EEEEEEH
T ss_pred EEEEeCCCCEEEEEEEccCCCCCCceeEEEEEECCCCCCCCCccccc
Confidence 34444455655555 22222222233333379999999999998433
No 45
>KOG1388|consensus
Probab=20.68 E-value=66 Score=29.21 Aligned_cols=54 Identities=30% Similarity=0.631 Sum_probs=34.9
Q ss_pred eeeeeeceeecccccCCCCCCCCCCcccCCCCcceEecCCC-CCCCCCCCcCCcc--CCCCCCC
Q psy15469 227 YFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEH-NTAGPDCNECAPF--YNDAPWR 287 (297)
Q Consensus 227 ~yYai~~i~v~g~C~CnGHA~~C~~~~~~~~~~~~~C~C~H-nT~G~~Ce~C~p~--y~~~Pw~ 287 (297)
-||.=.+--.+..|.|+|+++-|... .+.|.|++ .-.|..|++|..- |..+|-+
T Consensus 84 g~~GdtN~g~c~~~~~~g~~~~~~~~-------~~~c~c~~kgvvgd~c~~~e~~N~~r~~~~k 140 (217)
T KOG1388|consen 84 GFYGDTNGGKCQPCDCNGGASACVTL-------TGKCFCTTKGVVGDLCPKCEVPNRYRGKPLK 140 (217)
T ss_pred EEEecCCCCccCHhhhcCCeeeeecc-------CCccccccceEecccCcccccccccccCccc
Confidence 34442233345579999999999853 45677754 3477888888664 5555443
Done!