RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15469
(297 letters)
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 251 bits (642), Expect = 4e-82
Identities = 154/301 (51%), Positives = 200/301 (66%), Gaps = 16/301 (5%)
Query: 4 RCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCY----EDTHPV 59
RC+P F NAAF+ +V +TNTCG P +CVQ+G +C C H
Sbjct: 18 RCMPEFVNAAFNVTVVATNTCGTP-----PEEYCVQTGVTGVTKSCHLCDAGQQHLQHGA 72
Query: 60 RYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIY 117
+LTD +N TTWWQS TM GVQ+PN +N+TL GK FD+TYVRL F + RPESFAIY
Sbjct: 73 AFLTDYNNQADTTWWQSQTMLAGVQYPNSINLTLHLGKAFDITYVRLKFHTSRPESFAIY 132
Query: 118 KKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSPLTGGAVPFA 177
K+T E+ W P+Q+YS SC+ TY + + + + CT E+SD+SPLTGG V F+
Sbjct: 133 KRTREDGPWIPYQYYSGSCENTYSKANRGFIRTGGDEQQALCTDEFSDISPLTGGNVAFS 192
Query: 178 TLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADISVG 237
TLEGR A F + LQE+VTAT+IR+TL+RLNTF DE+F +P VL+SY+YAI+D +VG
Sbjct: 193 TLEGRPSAYNFDNSPVLQEWVTATDIRVTLNRLNTFGDEVFNEPKVLKSYYYAISDFAVG 252
Query: 238 ARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRA-SDDANEC 296
RCKCNGHASEC + + +C C+HNT G DC +C PF+ND PWRRA ++ A+EC
Sbjct: 253 GRCKCNGHASECVK----NEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308
Query: 297 R 297
Sbjct: 309 L 309
Score = 46.3 bits (109), Expect = 5e-06
Identities = 14/46 (30%), Positives = 19/46 (41%), Gaps = 3/46 (6%)
Query: 239 RCKCNGHASECPY---VRQSDGSTRRVCRCEHNTAGPDCNECAPFY 281
C CNG + EC + + +S G C NT G C C +
Sbjct: 310 PCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENF 355
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 231 bits (591), Expect = 8e-73
Identities = 76/313 (24%), Positives = 124/313 (39%), Gaps = 35/313 (11%)
Query: 4 RCIPPFENAAF--SASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYC--------- 52
C P + + + T+TCG + +P +C+ S C C
Sbjct: 17 SCYPATGDLLIGRAQKLSVTSTCG----LHKPEPYCIVSHLQEDKK-CFICDSRDPYHET 71
Query: 53 --YEDTHPVRYLTDLSN--TTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWS 108
+ +T + WWQS V I L F T++ + F +
Sbjct: 72 LNPDSHLIENVVTTFAPNRLKIWWQSEN------GVENVTIQLDLEAEFHFTHLIMTFKT 125
Query: 109 PRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYSDLSP 168
RP + I + + +W +++++ C+ ++ + C S YSD+ P
Sbjct: 126 FRPAAMLIERSSDFGKAWGVYRYFAYDCESSFPGISTGP---MKKVDDIICDSRYSDIEP 182
Query: 169 LTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLD-PSVLRSY 227
T G V F L+ ++ + Y+ +Q + T +RI +L+T D L + Y
Sbjct: 183 STEGEVIFRALDPAFKIE-DPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKY 241
Query: 228 FYAIADISVGARCKCNGHASEC----PYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYND 283
+YA+ D+ V C C GHASEC + +G C C HNT G +C C FY+D
Sbjct: 242 YYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHD 301
Query: 284 APWRRASDDANEC 296
PWR A +
Sbjct: 302 LPWRPAEGRNSNA 314
Score = 45.5 bits (107), Expect = 1e-05
Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 6/64 (9%)
Query: 239 RCKCNGHASECPY-----VRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDA 293
+C CN H+S C + + + S C+HNT G +C +C PFY P R D
Sbjct: 317 KCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHP-ERDIRDP 375
Query: 294 NECR 297
N C
Sbjct: 376 NLCE 379
Score = 37.7 bits (87), Expect = 0.004
Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)
Query: 239 RCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAP-FYNDA 284
C CN + P D T C C+ G C++C P + +
Sbjct: 440 SCACNPLGT-IPGGNPCDSETGY-CYCKRLVTGQRCDQCLPQHWGLS 484
Score = 32.7 bits (74), Expect = 0.12
Identities = 11/52 (21%), Positives = 17/52 (32%), Gaps = 5/52 (9%)
Query: 240 CKCNGHASECPYVRQSDGSTRRV-----CRCEHNTAGPDCNECAPFYNDAPW 286
C C+ SE + CRC+ + G C+ C + D
Sbjct: 381 CTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSA 432
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 228 bits (581), Expect = 1e-72
Identities = 109/318 (34%), Positives = 155/318 (48%), Gaps = 28/318 (8%)
Query: 4 RCIPPFENAAFSASVESTNTCG-----YQNGVPQPTRFCVQSGTHVTAN---------TC 49
PP+ N A A + ++ TCG P +C G V C
Sbjct: 10 SLHPPYFNLAEGARITASATCGEEAPTRSVSRPTEDLYCKLVGGPVAGGDPAQTIQGQYC 69
Query: 50 DYC----YEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLL 105
D C HPV D T WWQS + G++ N+VN+TL G+ F V YV +
Sbjct: 70 DICTAANSNKAHPVSNAID--GTERWWQSPPLSRGLE-YNEVNVTLDLGQVFHVAYVLIK 126
Query: 106 FW-SPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEYS 164
F SPRP+ + + + T ++ P+QF+++S ++ + + D V CT+EYS
Sbjct: 127 FANSPRPDLWVLERSTDFGHTYQPWQFFASSKRDCLERFGPRTLERITQDDDVICTTEYS 186
Query: 165 DLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELF----LD 220
+ PL G + + + GR A FSY+ L++F AT IR+ R NT L D
Sbjct: 187 RIVPLENGEIVVSLVNGRPGALNFSYSPLLRDFTKATNIRLRFLRTNTLLGHLMGKALRD 246
Query: 221 PSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPF 280
P+V R Y+Y+I DIS+G RC C+GHA C D R C C+HNT G C+ C P
Sbjct: 247 PTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPF-RLQCACQHNTCGGSCDRCCPG 305
Query: 281 YNDAPWRRAS-DDANECR 297
+N PW+ A+ D ANEC+
Sbjct: 306 FNQQPWKPATTDSANECQ 323
Score = 38.7 bits (89), Expect = 0.001
Identities = 20/71 (28%), Positives = 29/71 (40%), Gaps = 13/71 (18%)
Query: 239 RCKCNGHASECPYVRQSDGSTRRV------------CRCEHNTAGPDCNECAPFYNDAPW 286
C C+GHA +C Y + D C+H+T G +C C P + AP
Sbjct: 324 SCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPD 383
Query: 287 RRASDDANECR 297
+ D + CR
Sbjct: 384 QPL-DSPHVCR 393
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 208 bits (529), Expect = 1e-64
Identities = 92/320 (28%), Positives = 132/320 (41%), Gaps = 39/320 (12%)
Query: 4 RCIPPFENAAFSASVESTN---TCGYQNGVPQPTRFCVQSGTHVTANTCDYCY-EDTHPV 59
C P + V+ TCG P FC ++ N CD E HP
Sbjct: 49 ACQPESTDMTKYLKVKLDPPDITCGDP-----PETFCAMGNPYMCNNECDASTPELAHPP 103
Query: 60 RYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVT-YVRLLFWSPRPESFAI 116
+ D +T+WQS T + + P QVNITL + KT ++T + + F S RP+ +
Sbjct: 104 ELMFDFEGRHPSTFWQSATWKEYPK-PLQVNITLSWSKTIELTDNIVITFESGRPDQMIL 162
Query: 117 YKKTYENSSWTPFQFYSASCQETYGLPDDNSGK-ANDSDTRVFCTSEYSDLSPLTGGAVP 175
K +W P+Q+Y+ C + + + + + + + CT EYS +
Sbjct: 163 EKSLDYGRTWQPYQYYATDCLDAFHMDPKSVKDLSQHTVLEIICTEEYSTGYTTNSKIIH 222
Query: 176 FATLEG------------RYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDELFLDPSV 223
F + L++F T T++RI L R F+D
Sbjct: 223 FEIKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEI--FVDELH 280
Query: 224 LRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYND 283
L YFYAI+DI V RCKCN HA+ C +++ C CEHNT GPDC +C Y
Sbjct: 281 LARYFYAISDIKVRGRCKCNLHATVCV-----YDNSKLTCECEHNTTGPDCGKCKKNYQG 335
Query: 284 APWRRASDD------ANECR 297
PW S AN C
Sbjct: 336 RPWSPGSYLPIPKGAANACI 355
Score = 33.7 bits (76), Expect = 0.069
Identities = 5/43 (11%), Positives = 8/43 (18%), Gaps = 5/43 (11%)
Query: 240 CKCNGHASEC-----PYVRQSDGSTRRVCRCEHNTAGPDCNEC 277
+ + C C C G C +
Sbjct: 357 SISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKL 399
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 202 bits (514), Expect = 2e-63
Identities = 93/323 (28%), Positives = 126/323 (39%), Gaps = 40/323 (12%)
Query: 2 DNRCIPPFENAAFSASVE---STNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCY-EDTH 57
C P V+ S TCG P RFC ++ +N CD + H
Sbjct: 19 FYACQPKVMRLKDYVKVKVEPSGITCGDP-----PERFCSHENPYLCSNECDASNPDLAH 73
Query: 58 PVRYLTDLSNT--TTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTY-VRLLFWSPRPESF 114
P R + D T+WQS T P + NITL + KT ++T V + F RP
Sbjct: 74 PPRLMFDKEEEGLATYWQSITWSRYPS-PLEANITLSWNKTVELTDDVVMTFEYGRPTVM 132
Query: 115 AIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDS-DTRVFCTSEYSDLSPLTGGA 173
+ K +W P+QFY+ C E +G+ + + S RV CT EYS +
Sbjct: 133 VLEKSLDNGRTWQPYQFYAEDCMEAFGMSARRARDMSSSSAHRVLCTEEYSRWAGSKKEK 192
Query: 174 VPFATLEGRYRAKT-------------FSYNLNLQEFVTATEIRITLDRLNTFYDELFLD 220
+ R+ L+EF T T++R+ L R +
Sbjct: 193 HVRFEVRDRFAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTY--VQ 250
Query: 221 PSVLRSYFYAIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPF 280
L YFYAI++I V RCKCN HA+ C C CEHNT GPDC +C
Sbjct: 251 RENLYKYFYAISNIEVIGRCKCNLHANLCSMR-----EGSLQCECEHNTTGPDCGKCKKN 305
Query: 281 YNDAPWRRAS------DDANECR 297
+ WR S N C
Sbjct: 306 FRTRSWRAGSYLPLPHGSPNACA 328
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 54.4 bits (131), Expect = 2e-09
Identities = 14/58 (24%), Positives = 17/58 (29%), Gaps = 4/58 (6%)
Query: 240 CKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR 297
C C G +S + + C TAG C C Y P CR
Sbjct: 1 CPCPGGSSCAIVPKTKEVVC---THCPTGTAGKRCELCDDGYFGDPLGSNG-PVRLCR 54
Score = 42.9 bits (101), Expect = 2e-05
Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 2/59 (3%)
Query: 239 RCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAP-FYNDAPWRRASDDANEC 296
C+CN + V + T +C +NTAG C+ C F+ + +D C
Sbjct: 55 PCQCNDNIDPN-AVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKAC 112
Score = 33.2 bits (76), Expect = 0.050
Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 2/43 (4%)
Query: 239 RCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFY 281
C CN + + + T + C+C + +G DC C P Y
Sbjct: 111 ACACNPYGTVQQ-QSSCNPVTGQ-CQCLPHVSGRDCGTCDPGY 151
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.008
Identities = 30/251 (11%), Positives = 66/251 (26%), Gaps = 71/251 (28%)
Query: 50 DYCYEDTHPV---RYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLK-----FGKTFDVTY 101
Y Y+D V ++ + D P + ++ + V+
Sbjct: 15 QYQYKDILSVFEDAFVDNFD----------CKDVQDMPKSI-LSKEEIDHIIMSKDAVSG 63
Query: 102 VRLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTS 161
LFW+ + + +K E ++F + + P + + R+
Sbjct: 64 TLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRL---- 119
Query: 162 EYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLN-----TFY-- 214
Y+D V R + + ++R L L
Sbjct: 120 -YNDNQVFAKYNVS--------RLQPY------------LKLRQALLELRPAKNVLIDGV 158
Query: 215 ---------DELFLDPSVLRSYFYAIADISVGARCKCNG----------HASECPYVRQS 255
++ L V + I +++ C + + + +S
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLK-NCNSPETVLEMLQKLLYQIDPNWTSRS 217
Query: 256 DGSTRRVCRCE 266
D S+ R
Sbjct: 218 DHSSNIKLRIH 228
Score = 34.4 bits (78), Expect = 0.052
Identities = 24/160 (15%), Positives = 42/160 (26%), Gaps = 46/160 (28%)
Query: 103 RLLFWSPRPESFAIYKKTYENSSWTPFQFYSASCQE--TYGLPDDNSGKANDSDTRVFCT 160
RLL P + +W F SC+ T + +D T
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAKAWNAFNL---SCKILLT-------TRFKQVTDFLSAAT 285
Query: 161 SEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEF---------------VTATEIRI 205
+ + L + P L+ + + A IR
Sbjct: 286 TTHISLDHHSMTLTPDEVKS------LLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRD 339
Query: 206 TLDRLNTF----YDEL---------FLDPSVLRSYFYAIA 232
L + + D+L L+P+ R F ++
Sbjct: 340 GLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLS 379
>4a41_A GH89_CBM32-5, alpha-N-acetylglucosaminidase family protein;
hydrolase, family 89 glycoside hydrolase, family 32
carbohyd binding module; HET: GAL; 1.55A {Clostridium
perfringens} PDB: 4a44_A* 4a45_A* 4aax_A*
Length = 161
Score = 34.5 bits (79), Expect = 0.018
Identities = 15/95 (15%), Positives = 35/95 (36%), Gaps = 9/95 (9%)
Query: 39 QSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFD 98
Q TA + + ++ D T W T Y+ V+ Q +ITL+ G +++
Sbjct: 27 QGNMKATATSEHPDVGNEGLAKFAIDGKENTIW---HTKYNPVEELPQ-SITLELGGSYE 82
Query: 99 VTYVRLLF----WSPRPESFAIYKKTYENSSWTPF 129
+ L + + ++ + +++
Sbjct: 83 INKFTYLPRSGAKNGNITKYELHVSE-DGNNFRKI 116
>1tvg_A LOC51668 protein; cell cycle, structural genomics, PSI, protein
structure initiative, northeast structural genomics
consortium, NESG; 1.60A {Homo sapiens} SCOP: b.18.1.9
PDB: 1xpw_A
Length = 153
Score = 33.2 bits (75), Expect = 0.039
Identities = 14/78 (17%), Positives = 29/78 (37%), Gaps = 11/78 (14%)
Query: 52 CYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRP 111
++ HP + D N T+W +T M+ P + F K + + + + +
Sbjct: 30 SSDEKHPPENIID-GNPETFWTTTGMF-----PQ--EFIICFHKHVRIERLVIQSYFVQ- 80
Query: 112 ESFAIYKKTYEN-SSWTP 128
+ I K T + +
Sbjct: 81 -TLKIEKSTSKEPVDFEQ 97
>2jda_A Yecbm32; hypothetical protein, carbohydrate- binding module,
sugar-binding protein, pectin, plant cell WALL,
galacturonic acid; 1.35A {Yersinia enterocolitica} PDB:
2jd9_A
Length = 145
Score = 32.4 bits (74), Expect = 0.078
Identities = 19/91 (20%), Positives = 34/91 (37%), Gaps = 15/91 (16%)
Query: 40 SGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDV 99
VTA+ D E H + D + T W + G W + L+ K +
Sbjct: 9 QIVAVTASGYDS--EKGHVPANIAD-GDVKTRWAA----SGESW-----VQLELDKEQSI 56
Query: 100 TYVRLLFWSP--RPESFAIYKKTYENSSWTP 128
+ ++ + P R F+I+ + +W P
Sbjct: 57 ENILIVPFKPTERKLKFSIFYSN-DGKNWQP 86
>2v5d_A O-GLCNACASE NAGJ; family 32 carbohydrate binding module,
glycosidase, GH84, GH84C, CBM32, hydrolase, coiled coil;
3.30A {Clostridium perfringens}
Length = 737
Score = 32.0 bits (71), Expect = 0.28
Identities = 14/134 (10%), Positives = 37/134 (27%), Gaps = 12/134 (8%)
Query: 1 MDNRCIPPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVR 60
+ + A + + + T + + + P
Sbjct: 557 KEIAQNKLNTALSSFAVISEKVAQSFIQEALSFDLTLINPRTVKITASSEETSGENAPAS 616
Query: 61 YLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKT 120
+ +D T W + + ++TL+ +++ V+ PR +S
Sbjct: 617 FASDGDMNTFW---HSKWSSPAHEGPHHLTLELDNVYEINKVKYA---PRQDSKNGRITG 670
Query: 121 YE------NSSWTP 128
Y+ ++T
Sbjct: 671 YKVSVSLDGENFTE 684
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 31.9 bits (72), Expect = 0.31
Identities = 28/160 (17%), Positives = 52/160 (32%), Gaps = 39/160 (24%)
Query: 107 WSPRPESFAIYKKTYENSSWTPFQFYSASCQ--ETYG--LPDDNSGKANDSDTRVFCTSE 162
+S RP + + E+ P + + Q E + LP+ G A D E
Sbjct: 4 YSTRP--LTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTEGFAADD--------E 53
Query: 163 YSDLSPLTGGAVPF-ATLEGRYRAKTFSYNLN--LQEFVTA----TEIRITLDRLNTFYD 215
+ + L G + + ++L + F LN L EF +I +
Sbjct: 54 PTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDI-------HALAA 106
Query: 216 ELFLDP--------SVLRSYFYAIADISVGARCKCNGHAS 247
+L + ++++Y A + R S
Sbjct: 107 KLLQENDTTLVKTKELIKNYITARI---MAKRPFDKKSNS 143
>1jhj_A APC10; beta sandwich, jellyroll, cell cycle; 1.60A {Homo sapiens}
SCOP: b.18.1.9
Length = 171
Score = 29.6 bits (66), Expect = 0.76
Identities = 15/62 (24%), Positives = 24/62 (38%), Gaps = 8/62 (12%)
Query: 53 YEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPE 112
+ V L D N T+WQS DG Q + ++F + V + + E
Sbjct: 35 CKPGFGVDQLRD-DNLETYWQS----DGSQ---PHLVNIQFRRKTTVKTLCIYADYKSDE 86
Query: 113 SF 114
S+
Sbjct: 87 SY 88
>3ui4_A Peptidyl-prolyl CIS-trans isomerase NIMA-interact;
peptidyl-prolyl-isomerase; 0.80A {Homo sapiens} PDB:
3ui5_A 1fjd_A 1eq3_A
Length = 101
Score = 28.4 bits (64), Expect = 0.99
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 5/38 (13%)
Query: 7 PPFENAAFSASVESTNTCGYQNGVPQPTRFCVQSGTHV 44
PF+ AAF+ V + + + P T+F G H+
Sbjct: 62 GPFQEAAFALPVSGMDKPVFTDP-PVKTKF----GYHI 94
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 29.4 bits (67), Expect = 1.4
Identities = 11/37 (29%), Positives = 14/37 (37%), Gaps = 9/37 (24%)
Query: 127 TPFQFYSASCQETYGLPDDNSGKANDSDTRVFCTSEY 163
T + A + LP D TRV+C EY
Sbjct: 148 TADEMCKALLEVLGRLPPD---------TRVYCGHEY 175
>3myd_A Flagellar biosynthesis protein FLHA; flagellar export, type III
secretion, cytoplasmic FRAG protein transport; 2.40A
{Helicobacter pylori}
Length = 365
Score = 28.6 bits (64), Expect = 2.6
Identities = 7/32 (21%), Positives = 16/32 (50%)
Query: 193 NLQEFVTATEIRITLDRLNTFYDELFLDPSVL 224
++F+T E++ L+RL Y + + +
Sbjct: 167 YAEDFITKDEVKSLLERLAKDYPTIVEESKKI 198
>1hae_A Heregulin-alpha; growth factor; NMR {Homo sapiens} SCOP: g.3.11.1
PDB: 1haf_A 1hre_A 1hrf_A
Length = 63
Score = 26.2 bits (57), Expect = 2.6
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 245 HASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAP 279
+ EC V+ +R +C+C+ G C E P
Sbjct: 16 NGGECFMVKDLSNPSRYLCKCQPGFTGARCTENVP 50
>3u3i_A Nucleocapsid protein; endonuclease, RNA binding, CCHFV, RNA
protein; 2.30A {Crimean-congo hemorrhagic fever virus}
Length = 482
Score = 28.3 bits (62), Expect = 3.2
Identities = 23/106 (21%), Positives = 38/106 (35%), Gaps = 15/106 (14%)
Query: 21 TNTCGYQNGVPQPTRFCVQSGTHVTANTCDYCYEDTHPVRYLTDLSN------TTTWWQS 74
TN+ + VP RF Q + D Y L + + W S
Sbjct: 31 TNSYSFCESVPNLDRFVFQMASATDDAQKDSIYA-----SALVEATKFCAPIYECAWVSS 85
Query: 75 TTMYD-GVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKK 119
T + G++W + K++D +Y L P+ E A Y++
Sbjct: 86 TGIVKKGLEWFEK---NAGTIKSWDESYTELKVEVPKIEQLADYQQ 128
>3o6q_A Stage II sporulation protein SA; GAF domain, toxin-antitoxin, toxin
- antitoxin toxin-antitoxin complex; HET: MSE; 2.50A
{Bacillus subtilis}
Length = 157
Score = 27.0 bits (59), Expect = 5.0
Identities = 15/74 (20%), Positives = 29/74 (39%), Gaps = 11/74 (14%)
Query: 161 SEYSDLSPLTGGAVPFATLEGRYRAKTFSYNLNLQEFVTATEIRITLDRLNTFYDE---L 217
Y+D LT ++T + R + +++ LDR + +YD+ +
Sbjct: 57 KTYADKMNLTASLCHYSTQADKDRL--------TEHMDDPADVQTRLDRKDVYYDQYGKV 108
Query: 218 FLDPSVLRSYFYAI 231
L P + + Y I
Sbjct: 109 VLIPFTIETQNYVI 122
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein;
alpha-alpha superhelix, structural genomics; HET: MSE;
1.88A {Bacteroides thetaiotaomicron}
Length = 460
Score = 27.5 bits (61), Expect = 6.8
Identities = 11/62 (17%), Positives = 19/62 (30%)
Query: 66 SNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPESFAIYKKTYENSS 125
+ ++ V + TF +RL + E + YKK + S
Sbjct: 251 QSDASYNFYYLDATYVGAYSSFMADPHLMDTFVKGDIRLPLFQWMREGYLGYKKFHMRSD 310
Query: 126 WT 127
T
Sbjct: 311 DT 312
>3ikm_A DNA polymerase subunit gamma-1; human mitochondrial DNA polymerase,
disease mutation, DNA replication, DNA-binding,
DNA-directed DNA polymerase; HET: DNA; 3.24A {Homo
sapiens}
Length = 1172
Score = 27.5 bits (60), Expect = 7.5
Identities = 12/88 (13%), Positives = 25/88 (28%), Gaps = 7/88 (7%)
Query: 182 RYRAKTFSY-------NLNLQEFVTATEIRITLDRLNTFYDELFLDPSVLRSYFYAIADI 234
R AK F+Y + + R+T +++ LR Y +
Sbjct: 876 REHAKIFNYGRIYGAGQPFAERLLMQFNHRLTQQEAAEKAQQMYAATKGLRWYRLSDEGE 935
Query: 235 SVGARCKCNGHASECPYVRQSDGSTRRV 262
+ +E ++ D +
Sbjct: 936 WLVRELNLPVDRTEGGWISLQDLRKVQR 963
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 27.2 bits (59), Expect = 7.6
Identities = 11/44 (25%), Positives = 15/44 (34%), Gaps = 2/44 (4%)
Query: 240 CKCNGHASECPYVRQSDGSTRR-VCRCEHNTAGPDCNECAPFYN 282
C C+ + P+ G + VC C G C E N
Sbjct: 457 CNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLC-ESRGLEN 499
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.133 0.434
Gapped
Lambda K H
0.267 0.0503 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,528,952
Number of extensions: 256103
Number of successful extensions: 643
Number of sequences better than 10.0: 1
Number of HSP's gapped: 595
Number of HSP's successfully gapped: 60
Length of query: 297
Length of database: 6,701,793
Length adjustment: 93
Effective length of query: 204
Effective length of database: 4,105,140
Effective search space: 837448560
Effective search space used: 837448560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.3 bits)