RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15469
         (297 letters)



>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 55

 Score = 43.0 bits (101), Expect = 1e-06
 Identities = 14/58 (24%), Positives = 16/58 (27%), Gaps = 4/58 (6%)

Query: 240 CKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFYNDAPWRRASDDANECR 297
           C C G +S                 C   TAG  C  C   Y   P    +     CR
Sbjct: 1   CPCPGGSSCA---IVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGS-NGPVRLCR 54


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 42.6 bits (100), Expect = 1e-06
 Identities = 13/47 (27%), Positives = 21/47 (44%), Gaps = 2/47 (4%)

Query: 240 CKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAP-FYNDAP 285
           C+CN +      V   +  T    +C +NTAG  C+ C   F+ +  
Sbjct: 1   CQCNDNIDPN-AVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPL 46


>d1gqpa_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
           complex {Baker's yeast (Saccharomyces cerevisiae)
           [TaxId: 4932]}
          Length = 194

 Score = 36.1 bits (83), Expect = 0.002
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 8/66 (12%)

Query: 53  YEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPE 112
           ++  +PV +  D  N  T+WQS              + + F K  D+  + + F     E
Sbjct: 66  FKLGNPVDFALD-DNYDTFWQSDGGQP--HQ-----LDIMFSKRMDICVMAIFFSMIADE 117

Query: 113 SFAIYK 118
           S+A   
Sbjct: 118 SYAPSL 123


>d1jhja_ b.18.1.9 (A:) APC10/DOC1 subunit of the anaphase-promoting
           complex {Human (Homo sapiens) [TaxId: 9606]}
          Length = 161

 Score = 34.2 bits (78), Expect = 0.008
 Identities = 18/111 (16%), Positives = 31/111 (27%), Gaps = 14/111 (12%)

Query: 53  YEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPNQVNITLKFGKTFDVTYVRLLFWSPRPE 112
            +    V  L D  N  T+WQS              + ++F +   V  + +       E
Sbjct: 35  CKPGFGVDQLRD-DNLETYWQSD-------GSQPHLVNIQFRRKTTVKTLCIYADYKSDE 86

Query: 113 SFAIYKKTYE----NSSWTPFQFYSASCQETYGLPDDNSGKANDSDTRVFC 159
           S+   K +        +    +       E  G         +   TR F 
Sbjct: 87  SYTPSKISVRVGNNFHNLQEIR--QLELVEPSGWIHVPLTDNHKKPTRTFM 135


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 29.1 bits (65), Expect = 0.078
 Identities = 12/42 (28%), Positives = 19/42 (45%), Gaps = 2/42 (4%)

Query: 240 CKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAPFY 281
           C CN + +        +  T + C+C  + +G DC  C P Y
Sbjct: 1   CACNPYGTV-QQQSSCNPVTGQ-CQCLPHVSGRDCGTCDPGY 40


>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum)
           [TaxId: 4682]}
          Length = 425

 Score = 29.7 bits (66), Expect = 0.42
 Identities = 15/50 (30%), Positives = 21/50 (42%), Gaps = 8/50 (16%)

Query: 230 AIADISVGARCKCNGHASECPYVRQSDGSTRRVCRCEHNTAGPDCNECAP 279
           A+A+I+      C+ H         S+GS    C C     GPDC+E   
Sbjct: 14  AVANIN------CSEHGRAFLDGIISEGSP--KCECNTCYTGPDCSEKIQ 55


>d1szqa_ e.44.1.1 (A:) 2-methylcitrate dehydratase PrpD {Escherichia
           coli [TaxId: 562]}
          Length = 473

 Score = 27.2 bits (59), Expect = 2.7
 Identities = 11/86 (12%), Positives = 22/86 (25%), Gaps = 5/86 (5%)

Query: 43  HVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMY---DGVQWPNQVNITLKFGKTFDV 99
            +TA   +        +  L +  N       T  Y   +     N + +    G  F+ 
Sbjct: 350 RLTAADYEDNVAQDKRIDALREKINCFEDPAFTADYHDPEKRAIANAITLEFTDGTRFEE 409

Query: 100 TYVRLLFWSP--RPESFAIYKKTYEN 123
             V         R +        ++ 
Sbjct: 410 VVVEYPIGHARRRQDGIPKLVDKFKI 435


>d2b3wa1 d.336.1.1 (A:1-160) Hypothetical protein YbiA {Escherichia
           coli [TaxId: 562]}
          Length = 160

 Score = 25.7 bits (56), Expect = 5.4
 Identities = 15/91 (16%), Positives = 22/91 (24%), Gaps = 8/91 (8%)

Query: 38  VQSGTHVTANTCDYCYEDTHPVRYLTDLSNTTTWWQSTTMYDGVQWPN--QVNITLKFGK 95
            Q   HV  +T    Y  +         SN   +       DG  WP         KF  
Sbjct: 5   AQRIQHVMQDTIINFYSTSDDYGDF---SN---FAAWPIKVDGKTWPTSEHYFQAQKFLD 58

Query: 96  TFDVTYVRLLFWSPRPESFAIYKKTYENSSW 126
                 +R +            +      +W
Sbjct: 59  EKYREEIRRVSSPMVAARMGRDRSKPLRKNW 89


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.133    0.434 

Gapped
Lambda     K      H
   0.267   0.0527    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,146,209
Number of extensions: 53742
Number of successful extensions: 138
Number of sequences better than 10.0: 1
Number of HSP's gapped: 136
Number of HSP's successfully gapped: 15
Length of query: 297
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 212
Effective length of database: 1,240,546
Effective search space: 262995752
Effective search space used: 262995752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.7 bits)