BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1547
(216 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AD9|A Chain A, Crystal Structure Of Human Lactb2.
pdb|4AD9|B Chain B, Crystal Structure Of Human Lactb2.
pdb|4AD9|C Chain C, Crystal Structure Of Human Lactb2.
pdb|4AD9|D Chain D, Crystal Structure Of Human Lactb2.
pdb|4AD9|E Chain E, Crystal Structure Of Human Lactb2.
pdb|4AD9|F Chain F, Crystal Structure Of Human Lactb2
Length = 289
Score = 226 bits (575), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 110/205 (53%), Positives = 144/205 (70%), Gaps = 2/205 (0%)
Query: 1 MSAKIPNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLK 60
M+A + V +LS+RV+RVLG NPGPMTLQGTNTY++GTG RR+L+DTGEP EYI LK
Sbjct: 2 MAAVLQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 61
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN 120
Q L + + +++ IV++HWH DH GG+ DI + IN D T + K ++ +
Sbjct: 62 QALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINND--TTYCIKKLPRNPQREEIIGNGE 119
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVFSDLI 180
+ L DG ++K EGATLRV++TPGHT DH+ L LEEEN +FSGD ILGEGTTVF DL
Sbjct: 120 QQYVYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFEDLY 179
Query: 181 SYIESLRRIRSLKPDIIYPAHGPVV 205
Y+ SL+ + +K DIIYP HGPV+
Sbjct: 180 DYMNSLKELLKIKADIIYPGHGPVI 204
>pdb|2XF4|A Chain A, Crystal Structure Of Salmonella Enterica Serovar
Typhimurium Ycbl
Length = 210
Score = 70.1 bits (170), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 60/204 (29%), Positives = 96/204 (47%), Gaps = 31/204 (15%)
Query: 25 PMTLQGTNTYILGTGSRRL--LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDH 82
P+T N ++ RL L+D G E +KQ ++ ++L I+L+H H DH
Sbjct: 7 PVTAFSQNCSLIWCEQTRLAALVDPGGD-----AEKIKQEVDASGVTLMQILLTHGHLDH 61
Query: 83 VGGLKDIFEH-----INPDSATIWKFKGTEK-------DEAQATDFVPENKTVQTLTDGQ 130
VG ++ +H I P+ + +G DE Q P+ + L DG
Sbjct: 62 VGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQP--LTPD----RWLNDGD 115
Query: 131 LLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL--GEGTTVF--SDLISYIESL 186
+ V TL+V+H PGHT H+V E+ ++ SGD I G G + F D I+++
Sbjct: 116 RVSVGNVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAI 175
Query: 187 -RRIRSLKPDIIY-PAHGPVVEVG 208
R++ L D+ + P HGP+ +G
Sbjct: 176 KRKLLPLGDDVTFIPGHGPLSTLG 199
>pdb|2ZWR|A Chain A, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZWR|B Chain B, Crystal Structure Of Ttha1623 From Thermus Thermophilus
Hb8
pdb|2ZZI|A Chain A, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
pdb|2ZZI|B Chain B, Crystal Structure Of Ttha1623 In A Di-Iron-Bound Form
Length = 207
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/206 (27%), Positives = 95/206 (46%), Gaps = 26/206 (12%)
Query: 16 IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVL 75
+RV + GP+ N Y++ TG +L+D G D E + L Q ++ I+L
Sbjct: 1 MRVFPVTLGPLQ---ENAYLVETGEGPVLIDPG--DEPEKLLALFQTTGLIPLA---ILL 52
Query: 76 SHWHNDHVGGLKDIFE------HINPDSATIWKFKGTEKDEAQATDFVPENK-TVQTLTD 128
+H H DHVG + + E +++P + ++G + +P+ V+ L +
Sbjct: 53 THAHFDHVGAVAPLVEALDLPVYLHPLDLPL--YEGADLAARAWGLAIPKPPLPVRPLEE 110
Query: 129 GQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL----GEGTTVFSDLISYIE 184
G L +V+H PGH+ H+ E VFSGD + G +D +
Sbjct: 111 GMRL----FGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFA 166
Query: 185 SLRRIRSLKPDI-IYPAHGPVVEVGL 209
SL+R+ SL P+ ++P HGP +GL
Sbjct: 167 SLKRLLSLPPETRVHPGHGPGTTLGL 192
>pdb|2ZO4|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Family Protein
Ttha1429 From Thermus Thermophilus Hb8
Length = 317
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/179 (26%), Positives = 76/179 (42%), Gaps = 18/179 (10%)
Query: 43 LLLDTGEPDHME---YIENL--KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDS 97
+LL PDH + E L + L++E + H + +H P+
Sbjct: 66 ILLTHHHPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEG 125
Query: 98 ATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE 157
A +G + + + V + L DG+ L+V G LRV+ TPGH H LE
Sbjct: 126 A----LQGIRETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLE 181
Query: 158 EENVVFSGDTILGE--------GTTVFSDLISYIESLRRIRSLKPDIIYPAH-GPVVEV 207
EE V+ +GD +L + T + L ++ SL R+ L + Y H GP+ +V
Sbjct: 182 EEGVLLAGDALLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPIADV 240
>pdb|1A7T|A Chain A, Metallo-Beta-Lactamase With Mes
pdb|1A7T|B Chain B, Metallo-Beta-Lactamase With Mes
pdb|1A8T|A Chain A, Metallo-Beta-Lactamase In Complex With L-159,061
pdb|1A8T|B Chain B, Metallo-Beta-Lactamase In Complex With L-159,061
Length = 232
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 57/218 (26%), Positives = 96/218 (44%), Gaps = 44/218 (20%)
Query: 7 NVSQLSSRV--------IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPD-HMEYIE 57
+++QLS +V I GM P +N I+ + LLDT D E +
Sbjct: 12 SITQLSDKVYTYVSLAEIEGWGMVP-------SNGMIVINNHQAALLDTPINDAQTEMLV 64
Query: 58 NLKQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGTEKDEAQ 112
N V + + + +HWH D +GGL K + + N + + K KG
Sbjct: 65 NW--VTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLP----- 117
Query: 113 ATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGE 171
VPE+ +LT + ++G L+ + G H TD+IV+ L EN++F G +
Sbjct: 118 ----VPEHGFTDSLT----VSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDN 169
Query: 172 GTTVF-----SDLISYIESLRRIRSLKPDIIY--PAHG 202
TT +D+ ++ ++L ++++ P Y P HG
Sbjct: 170 QTTSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 207
>pdb|1XM8|A Chain A, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|1XM8|B Chain B, X-Ray Structure Of Glyoxalase Ii From Arabidopsis Thaliana
Gene At2g31350
pdb|2Q42|A Chain A, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
pdb|2Q42|B Chain B, Ensemble Refinement Of The Protein Crystal Structure Of
Glyoxalase Ii From Arabidopsis Thaliana Gene At2g31350
Length = 254
Score = 47.0 bits (110), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 60/145 (41%), Gaps = 21/145 (14%)
Query: 63 LNKESISLEHIVLSHWHNDHVGG---LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPE 119
L + +L +I+ +H H DH GG LKD + SA +KD D
Sbjct: 40 LKRSGRNLTYILNTHHHYDHTGGNLELKDRYGAKVIGSAM-------DKDRIPGIDMA-- 90
Query: 120 NKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI--LGEGTTVFS 177
L DG G + V+ TPGHT HI L +F+GDT+ L G
Sbjct: 91 ------LKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEG 144
Query: 178 DLISYIESLRRIRSLKPDI-IYPAH 201
+ SL++I SL D IY H
Sbjct: 145 TPKQMLASLQKITSLPDDTSIYCGH 169
>pdb|4ZNB|A Chain A, Metallo-Beta-Lactamase (C181s Mutant)
pdb|4ZNB|B Chain B, Metallo-Beta-Lactamase (C181s Mutant)
Length = 232
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 7 NVSQLSSRV--------IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIEN 58
+++QLS +V I GM P +N I+ + LLDT P + E
Sbjct: 12 SITQLSDKVYTYVSLAEIEGWGMVP-------SNGMIVINNHQAALLDT--PINDAQTET 62
Query: 59 L-KQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGTEKDEAQ 112
L V + + + +HWH D +GGL K + + N + + K KG
Sbjct: 63 LVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLP----- 117
Query: 113 ATDFVPENKTVQTLTDGQLLKVEGATLRVIH-TPGHTTDHIVLKLEEENVVFSGDTILGE 171
VPE+ +LT + ++G L+ + GH TD+IV+ L EN++F G +
Sbjct: 118 ----VPEHGFTDSLT----VSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGSMLKDN 169
Query: 172 GTTVF-----SDLISYIESLRRIRSLKPDIIY--PAHG 202
T +D+ ++ ++L ++++ P Y P HG
Sbjct: 170 QATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 207
>pdb|3R2U|A Chain A, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|B Chain B, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|C Chain C, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
pdb|3R2U|D Chain D, 2.1 Angstrom Resolution Crystal Structure Of
Metallo-Beta-Lactamase From Staphylococcus Aureus Subsp.
Aureus Col
Length = 466
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/196 (27%), Positives = 83/196 (42%), Gaps = 34/196 (17%)
Query: 47 TGEPDHMEYIENLK---QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKF 103
TGE ++ I +L +V ++E +++ H +H H D G++D+ +N A I +
Sbjct: 47 TGEAMIIDPIRDLSSYIRVADEEGLTITHAAETHIHADFASGIRDVAIKLN---ANI--Y 101
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENV-- 161
E D+ +P + D + V L+V+HTPGHT + I L +E
Sbjct: 102 VSGESDDTLGYKNMPNHTHFVQHNDD--IYVGNIKLKVLHTPGHTPESISFLLTDEGAGA 159
Query: 162 -----VFSGDTILGEGTTVFSDL------------ISYIESLRRIRSLK--PDI--IYPA 200
+FSGD I G DL I + + I S+K PD I+P
Sbjct: 160 QVPMGLFSGDFIF-VGDIGRPDLLEKAVKVEGSSEIGAKQMFKSIESIKDLPDYIQIWPG 218
Query: 201 HGPVVEVGLSFSLMPT 216
HG G S +PT
Sbjct: 219 HGAGSPCGKSLGAIPT 234
>pdb|1ZNB|A Chain A, Metallo-Beta-Lactamase
pdb|1ZNB|B Chain B, Metallo-Beta-Lactamase
pdb|2ZNB|A Chain A, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|2ZNB|B Chain B, Metallo-Beta-Lactamase (Cadmium-Bound Form)
pdb|3ZNB|A Chain A, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
pdb|3ZNB|B Chain B, Metallo-Beta-Lactamase (Zn, Hg-Bound Form)
Length = 232
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 7 NVSQLSSRV--------IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIEN 58
+++QLS +V I GM P +N I+ + LLDT P + E
Sbjct: 12 SITQLSDKVYTYVSLAEIEGWGMVP-------SNGMIVINNHQAALLDT--PINDAQTET 62
Query: 59 L-KQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGTEKDEAQ 112
L V + + + +HWH D +GGL K + + N + + K KG
Sbjct: 63 LVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYANQMTIDLAKEKGLP----- 117
Query: 113 ATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGE 171
VPE+ +LT + ++G L+ + G H TD+IV+ L EN++F G +
Sbjct: 118 ----VPEHGFTDSLT----VSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDN 169
Query: 172 GTTVF-----SDLISYIESLRRIRSLKPDIIY--PAHG 202
T +D+ ++ ++L ++++ P Y P HG
Sbjct: 170 QATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 207
>pdb|2Q0J|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
pdb|2Q0J|B Chain B, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 321
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 52/102 (50%), Gaps = 13/102 (12%)
Query: 110 EAQATDFVPENKTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI 168
EA A D +P V+ + DG+ L++ L+VI GH+ DH+V +F GD +
Sbjct: 145 EACAWDALP----VRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 200
Query: 169 ----LGEGTT---VFSDLISYIESLRRIRSLKPDI-IYPAHG 202
EG VF D+ +Y+ESL R++ L + + P HG
Sbjct: 201 GEFDEAEGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHG 242
>pdb|2VW8|A Chain A, Crystal Structure Of Quinolone Signal Response Protein
Pqse From Pseudomonas Aeruginosa
Length = 303
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 110 EAQATDFVPENKTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI 168
EA A D +P V+ + DG+ L++ L+VI GH+ DH+V +F GD +
Sbjct: 127 EACAWDALP----VRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
Query: 169 ----LGEGTT---VFSDLISYIESLRRIRSLKPDIIY--PAHG 202
EG VF D+ +Y+ESL R++ L P ++ P HG
Sbjct: 183 GEFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHG 224
>pdb|2Q0I|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 110 EAQATDFVPENKTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI 168
EA A D +P V+ + DG+ L++ L+VI GH+ DH+V +F GD +
Sbjct: 127 EACAWDALP----VRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
Query: 169 ----LGEGTT---VFSDLISYIESLRRIRSLKPDIIY--PAHG 202
EG VF D+ +Y+ESL R++ L P ++ P HG
Sbjct: 183 GEFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHG 224
>pdb|3DH8|A Chain A, Structure Of Pseudomonas Quinolone Signal Response Protein
Pqse
Length = 303
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 53/103 (51%), Gaps = 15/103 (14%)
Query: 110 EAQATDFVPENKTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI 168
EA A D +P V+ + DG+ L++ L+VI GH+ DH+V +F GD +
Sbjct: 127 EACAWDALP----VRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDAL 182
Query: 169 ----LGEGTT---VFSDLISYIESLRRIRSLKPDIIY--PAHG 202
EG VF D+ +Y+ESL R++ L P ++ P HG
Sbjct: 183 GAFDEAEGVWRPLVFDDMEAYLESLERLQRL-PTLLQLIPGHG 224
>pdb|2NXA|A Chain A, Structure Of Zn-Dependent Metallo-Beta-Lactamase From
Bacillus Cereus R121h, C221d Double Mutant
pdb|2NYP|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221d Doble Mutant With Two Zinc Ions
Length = 221
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 51/197 (25%), Positives = 91/197 (46%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H DH+GG+K
Sbjct: 35 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADHIGGIKT 91
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 92 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 141
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ GD + LG + ++ + IE+ L+R R+
Sbjct: 142 -----GHTEDNIVVWLPQYNILVGGDLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 196
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 197 I--NAVVPGHGEVGDKG 211
>pdb|2BMI|A Chain A, Metallo-Beta-Lactamase
pdb|2BMI|B Chain B, Metallo-Beta-Lactamase
pdb|1KR3|A Chain A, Crystal Structure Of The Metallo Beta-Lactamase From
Bacteroides Fragilis (Cfia) In Complex With The
Tricyclic Inhibitor Sb-236050.
pdb|1KR3|B Chain B, Crystal Structure Of The Metallo Beta-Lactamase From
Bacteroides Fragilis (Cfia) In Complex With The
Tricyclic Inhibitor Sb-236050
Length = 232
Score = 45.8 bits (107), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 7 NVSQLSSRV--------IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPD-HMEYIE 57
+++QLS +V I GM P +N I+ + LLDT D E +
Sbjct: 12 SITQLSDKVYTYVSLAEIEGWGMVP-------SNGMIVINNHQAALLDTPINDAQTEMLV 64
Query: 58 NLKQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGTEKDEAQ 112
N V + + + +HWH D +GGL K + + N + + K KG
Sbjct: 65 NW--VTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLP----- 117
Query: 113 ATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGE 171
VPE+ +LT + ++G L+ + G H TD+IV+ L EN++F G +
Sbjct: 118 ----VPEHGFTDSLT----VSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDN 169
Query: 172 GTTVF-----SDLISYIESLRRIRSLKPDIIY--PAHG 202
T +D+ ++ ++L ++++ P Y P HG
Sbjct: 170 QATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 207
>pdb|3ADR|A Chain A, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
pdb|3ADR|B Chain B, The First Crystal Structure Of An Archaeal
Metallo-Beta-Lactamase Superfamily Protein; St1585 From
Sulfolobus Tokodaii
Length = 261
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 44/164 (26%), Positives = 74/164 (45%), Gaps = 29/164 (17%)
Query: 69 SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFK-------GTEKDEAQATDFVPENK 121
L++IVL+H H DH+G L ++ + FK G +K A + +
Sbjct: 50 KLDYIVLTHLHIDHIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLY 109
Query: 122 TV-----QTLTDGQLLKVE--------GATLRVIHTPGHTTDHIVLKLEEENVVFSGDT- 167
V + L ++++VE G R+I+TPGH H + + ++ +F+GD+
Sbjct: 110 YVYGGLEKKLDQDKVIEVEGNEEFDLGGYRXRLIYTPGHARHHXSVLV--DDFLFTGDSA 167
Query: 168 ------ILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVV 205
++ T D Y ESL+R LKP ++ AHG +V
Sbjct: 168 GAYFNGVVIPTTPPVIDYKXYXESLKRQIELKPKVVGFAHGGLV 211
>pdb|1HLK|A Chain A, Metallo-Beta-Lactamase From Bacteroides Fragilis In
Complex With A Tricyclic Inhibitor
pdb|1HLK|B Chain B, Metallo-Beta-Lactamase From Bacteroides Fragilis In
Complex With A Tricyclic Inhibitor
Length = 227
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/218 (25%), Positives = 95/218 (43%), Gaps = 44/218 (20%)
Query: 7 NVSQLSSRV--------IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPD-HMEYIE 57
+++QLS +V I GM P +N I+ + LLDT D E +
Sbjct: 9 SITQLSDKVYTYVSLAEIEGWGMVP-------SNGMIVINNHQAALLDTPINDAQTEMLV 61
Query: 58 NLKQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGTEKDEAQ 112
N V + + + +HWH D +GGL K + + N + + K KG
Sbjct: 62 NW--VTDSLHAKVTTFIPNHWHGDCIGGLGYLQRKGVQSYANQMTIDLAKEKGLP----- 114
Query: 113 ATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGE 171
VPE+ +LT + ++G L+ + G H TD+IV+ L EN++F G +
Sbjct: 115 ----VPEHGFTDSLT----VSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDN 166
Query: 172 GTTVF-----SDLISYIESLRRIRSLKPDIIY--PAHG 202
T +D+ ++ ++L ++++ P Y P HG
Sbjct: 167 QATSIGNISDADVTAWPKTLDKVKAKFPSARYVVPGHG 204
>pdb|2NZF|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group C2
Length = 221
Score = 43.5 bits (101), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H DH+GG+K
Sbjct: 35 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADHIGGIKT 91
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 92 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 141
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 142 -----GHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 196
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 197 I--NAVVPGHGEVGDKG 211
>pdb|2NZE|A Chain A, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121.
pdb|2NZE|B Chain B, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121
Length = 222
Score = 43.5 bits (101), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H DH+GG+K
Sbjct: 36 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADHIGGIKT 92
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 93 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 142
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 143 -----GHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 197
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 198 I--NAVVPGHGEVGDKG 212
>pdb|3KNR|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNS|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
Length = 227
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 50/197 (25%), Positives = 90/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ GD + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGDLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|1X8G|A Chain A, Crystal Structure Of The Mono-Zinc Carbapenemase Cpha From
Aeromonas Hydrophyla
pdb|2GKL|A Chain A, Crystal Structure Of The Zinc Carbapenemase Cpha In
Complex With The Inhibitor Pyridine-2,4-Dicarboxylate
pdb|2QDS|A Chain A, Crystal Structure Of The Zinc Carbapenemase Cpha In
Complex With The Inhibitor D-captopril
pdb|3F9O|A Chain A, Crystal Structure Of The Di-Zinc Carbapenemase Cpha From
Aeromonas Hydrophila
Length = 227
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 89/206 (43%), Gaps = 30/206 (14%)
Query: 24 GPMTLQGTNTYI-------LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLS 76
GP+ + N Y+ G ++ T PD + L + ++++ + LE ++ +
Sbjct: 10 GPVYVVEDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPV-LE-VINT 67
Query: 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEK-DEAQATDF----VPENKTV-----QTL 126
++H D GG ++ I + + + K D A+ F +PE + +
Sbjct: 68 NYHTDRAGG-NAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVV 126
Query: 127 TDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGE--GTTVFSDLISYIE 184
DG EG P HT D I + +E V++ G+ IL E G F+D+ +Y +
Sbjct: 127 HDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLY-GNCILKEKLGNLSFADVKAYPQ 185
Query: 185 SLRRIRSLKPDII-------YPAHGP 203
+L R++++K I P HGP
Sbjct: 186 TLERLKAMKLPIKTVIGGHDSPLHGP 211
>pdb|3VPE|A Chain A, Crystal Structure Of Metallo-beta-lactamase Smb-1
pdb|3VQZ|A Chain A, Crystal Structure Of Metallo-beta-lactamase, Smb-1, In A
Complex With Mercaptoacetic Acid
Length = 262
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 52/208 (25%), Positives = 89/208 (42%), Gaps = 34/208 (16%)
Query: 25 PMTLQGTNTYILGTGS----------RRLLLD-TGEPDHMEYIENLKQVLNKESISLEHI 73
P T+ G NT+ +GTG +L+D T E N++ + K S +++I
Sbjct: 11 PFTIYG-NTHYVGTGGISAVLLSSPQGHILVDGTTEKGAQVVAANIRAMGFKLS-DVKYI 68
Query: 74 VLSHWHNDHVGGLKDIFE---------HINPDSATIWKFKGTEKDEAQATDFVPENKTVQ 124
+ +H H DH GG+ + + N D+ ++ ++F P + V+
Sbjct: 69 LSTHSHEDHAGGISAMQKLTGATVLAGAANVDTLRTGVSPKSDPQFGSLSNF-PGSAKVR 127
Query: 125 TLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE------ENVVFSGD-TILGEGTTVFS 177
+ DG+L+K+ ++ TPGHT I + ++VVF+ T + + FS
Sbjct: 128 AVADGELVKLGPLAVKAHATPGHTEGGITWTWQSCEQGKCKDVVFADSLTAVSADSYRFS 187
Query: 178 DLISYIESLR----RIRSLKPDIIYPAH 201
D + SLR + L DI AH
Sbjct: 188 DHPEVVASLRGSFEAVEKLSCDIAIAAH 215
>pdb|3I0V|A Chain A, Bacillus Cereus Metallo-beta-lactamase: Apo Form
Length = 212
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 25 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 81
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 82 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 131
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI--------LGEGTTVF-SDLISYIES-LRRIR 190
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R
Sbjct: 132 -----GHTEDNIVVWLPQYNILVGGXCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYR 186
Query: 191 SLKPDIIYPAHGPVVEVG 208
++ + + P HG V + G
Sbjct: 187 NI--NAVVPGHGEVGDKG 202
>pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9 C168S
Mutant
Length = 227
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGSLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|3I14|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Partially Oxidized
Length = 216
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 49/198 (24%), Positives = 89/198 (44%), Gaps = 40/198 (20%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 29 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 85
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 86 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 135
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI--------LGEGTTVF-SDLISYIES-LRRIR 190
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R
Sbjct: 136 -----GHTEDNIVVWLPQYNILVGGXCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYR 190
Query: 191 SLKPDIIYPAHGPVVEVG 208
++ + + P HG V + G
Sbjct: 191 NI--NAVVPGHGEVGDKG 206
>pdb|1X8H|A Chain A, The Mono-Zinc Carbapenemase Cpha (N220g Mutant) Shows A
Zn(Ii)- Nh2 Arg Coordination
Length = 228
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 24 GPMTLQGTNTYI-------LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLS 76
GP+ + N Y+ G ++ T PD + L + ++++ + LE ++ +
Sbjct: 10 GPVYVVEDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPV-LE-VINT 67
Query: 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEK-DEAQATDF----VPENKTV-----QTL 126
++H D GG ++ I + + + K D A+ F +PE + +
Sbjct: 68 NYHTDRAGG-NAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVV 126
Query: 127 TDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGE--GTTVFSDLISYIE 184
DG EG P HT D I + +E V++ G IL E G F+D+ +Y +
Sbjct: 127 HDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGG-CILKEKLGNLSFADVKAYPQ 185
Query: 185 SLRRIRSLKPDII-------YPAHGP 203
+L R++++K I P HGP
Sbjct: 186 TLERLKAMKLPIKTVIGGHDSPLHGP 211
>pdb|1X8I|A Chain A, Crystal Structure Of The Zinc Carbapenemase Cpha In
Complex With The Antibiotic Biapenem
pdb|3FAI|A Chain A, The Di Zinc Carbapenemase Cpha N220g Mutant
pdb|3IOF|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 10a
pdb|3IOG|A Chain A, Crystal Structure Of Cpha N220g Mutant With Inhibitor 18
Length = 227
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 88/206 (42%), Gaps = 30/206 (14%)
Query: 24 GPMTLQGTNTYI-------LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLS 76
GP+ + N Y+ G ++ T PD + L + ++++ + LE ++ +
Sbjct: 10 GPVYVVEDNYYVQENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPV-LE-VINT 67
Query: 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEK-DEAQATDF----VPENKTV-----QTL 126
++H D GG ++ I + + + K D A+ F +PE + +
Sbjct: 68 NYHTDRAGG-NAYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVV 126
Query: 127 TDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGE--GTTVFSDLISYIE 184
DG EG P HT D I + +E V++ G IL E G F+D+ +Y +
Sbjct: 127 HDGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLYGG-CILKEKLGNLSFADVKAYPQ 185
Query: 185 SLRRIRSLKPDII-------YPAHGP 203
+L R++++K I P HGP
Sbjct: 186 TLERLKAMKLPIKTVIGGHDSPLHGP 211
>pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|2BC2|B Chain B, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|3BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Monoclinic Crystal Form
pdb|3I15|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Fully Oxidized
Length = 227
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGXLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|1BMC|A Chain A, Structure Of A Zinc Metallo-Beta-Lactamase From Bacillus
Cereus
Length = 221
Score = 40.0 bits (92), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 35 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 91
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 92 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 141
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 142 -----GHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 196
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 197 I--NAVVPGHGEVGDKG 211
>pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1MQO|A Chain A, Metallo-Beta-Lactamase Bcii Cd Substituted From Bacillus
Cereus At 1.35 Angstroms Resolution
pdb|3I11|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus
pdb|3I13|A Chain A, Bacillus Cereus Zn-dependent Metallo-beta-lactamase At Ph
5.8
Length = 227
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADRIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|2QED|A Chain A, Crystal Structure Of Salmonella Thyphimurium Lt2
Glyoxalase Ii
Length = 258
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/149 (30%), Positives = 69/149 (46%), Gaps = 19/149 (12%)
Query: 71 EHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQ 130
E I L+H H+DHVGG+K++ +H P + E + AT V DG
Sbjct: 54 EAIFLTHHHHDHVGGVKELLQHF-PQMTV---YGPAETQDKGATHLV---------GDGD 100
Query: 131 LLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGT-TVFSDLISYI-ESLRR 188
++V G + TPGHT H+ +F GDT+ G +F S + +SL +
Sbjct: 101 TIRVLGEKFTLFATPGHTLGHVCYF--SRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMK 158
Query: 189 IRSLKPD-IIYPAHG-PVVEVGLSFSLMP 215
I SL D +I AH + + + S++P
Sbjct: 159 INSLPDDTLICCAHEYTLANIKFALSILP 187
>pdb|3SW3|A Chain A, Edta-Free Crystal Structure Of The Mutant C221d Of
Carbapenemase Cpha From Aeromonas Hydrophila
pdb|3T9M|A Chain A, Crystal Structure Of Mutant C221d Of Carbapenemase Cpha
From Aeromonas Hydrophila
Length = 227
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 41/85 (48%), Gaps = 10/85 (11%)
Query: 128 DGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGE--GTTVFSDLISYIES 185
DG EG P HT D I + +E V++ G+ IL E G F+D+ +Y ++
Sbjct: 128 DGDFTLQEGKVRAFYAGPAHTPDGIFVYFPDEQVLY-GNDILKEKLGNLSFADVKAYPQT 186
Query: 186 LRRIRSLKPDII-------YPAHGP 203
L R++++K I P HGP
Sbjct: 187 LERLKAMKLPIKTVIGGHDSPLHGP 211
>pdb|2BFZ|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BFZ|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BG6|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG6|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG8|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents.
pdb|2BGA|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BGA|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized
Length = 227
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADCIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGXLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|2BFK|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFK|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFL|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BFL|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BG2|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG2|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG8|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents
Length = 227
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 49/197 (24%), Positives = 89/197 (45%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H D +GG+K
Sbjct: 41 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHADCIGGIKT 97
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 98 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 147
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 148 -----GHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 202
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 203 I--NAVVPGHGEVGDKG 217
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3LVZ|A Chain A, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3LVZ|B Chain B, New Refinement Of The Crystal Structure Of Bjp-1, A
Subclass B3 Metallo-Beta-Lactamase Of Bradyrhizobium
Japonicum
pdb|3M8T|A Chain A, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
pdb|3M8T|B Chain B, Crystal Structure Of The Complex Between Class B3
Beta-Lactamase Bjp-1 And 4-Nitrobenzene-Sulfonamide
Length = 294
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
G Y++ T +L+DT P I++ L + ++ I+ +H H DH GG +I
Sbjct: 54 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEI 113
Query: 90 FEHINPDSATIWK---------FKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ + + G EK+E A P K + + +G + + TL
Sbjct: 114 KKETGAQLVAGERDKPLLEGGYYPGDEKNEDLA---FPAVKVDRAVKEGDRVTLGDTTLT 170
Query: 141 VIHTPGHTTDHIVLKL------EEENVVF--SGDTILGE--GTTVFSDLI-SYIESLRRI 189
TPGH+ ++ E+ V+F SG L G ++ ++ Y + +
Sbjct: 171 AHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKA 230
Query: 190 RSLKPDIIYPAH 201
+++K D++ H
Sbjct: 231 KAMKIDVLLGPH 242
>pdb|2GMN|A Chain A, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
pdb|2GMN|B Chain B, Crystal Structure Of Bjp-1, A Subclass B3
Metallo-beta-lactamase Of Bradyrhizobium Japonicum
Length = 274
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/192 (21%), Positives = 79/192 (41%), Gaps = 23/192 (11%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
G Y++ T +L+DT P I++ L + ++ I+ +H H DH GG +I
Sbjct: 34 GIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAEI 93
Query: 90 FEHINPDSATIWK---------FKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ + + G EK+E A P K + + +G + + TL
Sbjct: 94 KKETGAQLVAGERDKPLLEGGYYPGDEKNEDLA---FPAVKVDRAVKEGDRVTLGDTTLT 150
Query: 141 VIHTPGHTTDHIVLKL------EEENVVF--SGDTILGE--GTTVFSDLI-SYIESLRRI 189
TPGH+ ++ E+ V+F SG L G ++ ++ Y + +
Sbjct: 151 AHATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKA 210
Query: 190 RSLKPDIIYPAH 201
+++K D++ H
Sbjct: 211 KAMKIDVLLGPH 222
>pdb|2DKF|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
pdb|2DKF|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8, A Rna Degradation Protein Of The
Metallo-Beta-Lactamase Superfamily
Length = 431
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/151 (25%), Positives = 68/151 (45%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGXFQGKEEARN-HAPFGFDPKEVDAVLLTHAHLDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLXEIVLEDALKVXDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|2P4Z|A Chain A, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
pdb|2P4Z|B Chain B, A Ferredoxin-Like Metallo-Beta-Lactamase Superfamily
Protein From Thermoanaerobacter Tengcongensis
Length = 284
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 41/62 (66%), Gaps = 4/62 (6%)
Query: 35 ILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN 94
+L G++ +++DTG+ ++ +I+N ++ + ++ +VL+H H DH+GGLK + E N
Sbjct: 37 LLKKGNKEIVVDTGQSEN--FIKNC-GLMGIDVGRIKKVVLTHGHYDHIGGLKGLLER-N 92
Query: 95 PD 96
P+
Sbjct: 93 PE 94
>pdb|1P9E|A Chain A, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
pdb|1P9E|B Chain B, Crystal Structure Analysis Of Methyl Parathion Hydrolase
From Pseudomonas Sp Wbc-3
Length = 331
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/169 (26%), Positives = 66/169 (39%), Gaps = 43/169 (25%)
Query: 34 YILGTGSRRLLLDTGE-----PDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
Y++ TGS+ +L+DTG P NLK + ++ I ++H H DHVGGL
Sbjct: 100 YLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAA-GYQPEQVDEIYITHMHPDHVGGLM- 157
Query: 89 IFEHI-------------------------NPDSATIWKFKGTEKD---EAQATDFVPEN 120
+ E + PD + FKG +A F P +
Sbjct: 158 VGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPYVKAGKFKPFS 217
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL 169
+ + L G HTPGHTT V++ + + + GD IL
Sbjct: 218 GNTDLVPGIKALASHG------HTPGHTT--YVVESQGQKLALLGDLIL 258
>pdb|2UYX|A Chain A, Metallo-Beta-Lactamase (1bc2) Single Point Mutant D120s
Length = 228
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/197 (24%), Positives = 88/197 (44%), Gaps = 39/197 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
+N +L T +L+D+ D + E IE +++ K + ++++H H +GG+K
Sbjct: 42 SNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDVIITHAHASRIGGIKT 98
Query: 89 IFE-----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLR 140
+ E H +A + K G E+ D T+ N V+T G+
Sbjct: 99 LKERGIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK---------- 148
Query: 141 VIHTPGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIES-LRRIRS 191
GHT D+IV+ L + N++ G + LG + ++ + IE+ L+R R+
Sbjct: 149 -----GHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVLKRYRN 203
Query: 192 LKPDIIYPAHGPVVEVG 208
+ + + P HG V + G
Sbjct: 204 I--NAVVPGHGEVGDKG 218
>pdb|4GYU|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
A121f Mutant From Klebsiella Pneumoniae
Length = 243
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 70/152 (46%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H+H D +GG+
Sbjct: 48 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHFHQDKMGGM 102
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 103 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 151
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 152 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 183
>pdb|2P18|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
pdb|2P1E|A Chain A, Crystal Structure Of The Leishmania Infantum Glyoxalase Ii
With D- Lactate At The Active Site
Length = 311
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/171 (25%), Positives = 71/171 (41%), Gaps = 32/171 (18%)
Query: 53 MEYIE-NLKQVLNKE-SISLEHIVLSHWHNDHVGG---LKDIFEHINPDSATIWKFKGTE 107
+ YIE +LKQ N + + + I+ +H H DH GG LK E +N +
Sbjct: 66 LTYIEEHLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVV----- 120
Query: 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEEN------V 161
A D +P + + +G ++V ++ VI P HT H++ K++
Sbjct: 121 ---GGANDSIP--AVTKPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVA 175
Query: 162 VFSGDTILGEGTTVF-----SDLISYIESLRRIRS------LKPDIIYPAH 201
+F+GDT+ G F D+ +E + I K I+P H
Sbjct: 176 LFTGDTMFIAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGH 226
>pdb|3TP9|A Chain A, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
pdb|3TP9|B Chain B, Crystal Structure Of Alicyclobacillus Acidocaldarius
Protein With Beta-Lactamase And Rhodanese Domains
Length = 474
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/196 (21%), Positives = 75/196 (38%), Gaps = 31/196 (15%)
Query: 46 DTGEP---DHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWK 102
+TGE D +E +E + + + +H H D V G ++ + +A
Sbjct: 25 ETGEACVIDPARDVEPYLLTAKREGLRIVAALETHIHADFVSGAREXADRAG--AAICVS 82
Query: 103 FKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEEN-- 160
+G + +++ P + L DG L + V HTPGHT +H+ L +
Sbjct: 83 DEGPPEWKSEYVKAYPH----RLLKDGDELHFGNVRIVVXHTPGHTPEHVSYLLYDGKTS 138
Query: 161 -----VVFSGDTIL--------------GEGTTVFSDLISYIESLRRIRSLKPDI-IYPA 200
+FSGD + GE + + SLR+ +L + + PA
Sbjct: 139 PDVPXALFSGDFVFVGDVGRPDLLERVAGESGSSEALARQXFRSLRKFEALPDHVQVLPA 198
Query: 201 HGPVVEVGLSFSLMPT 216
HG G + +P+
Sbjct: 199 HGAGSACGKALGAVPS 214
>pdb|2WHG|A Chain A, Crystal Structure Of The Di-Zinc Metallo-Beta-Lactamase
Vim- 4 From Pseudomonas Aeruginosa
pdb|2WHG|B Chain B, Crystal Structure Of The Di-Zinc Metallo-Beta-Lactamase
Vim- 4 From Pseudomonas Aeruginosa
pdb|2WRS|A Chain A, Crystal Structure Of The Mono-zinc Metallo-beta-lactamase
Vim-4 From Pseudomonas Aeruginosa
pdb|2WRS|B Chain B, Crystal Structure Of The Mono-zinc Metallo-beta-lactamase
Vim-4 From Pseudomonas Aeruginosa
Length = 230
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 79/186 (42%), Gaps = 27/186 (14%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL---- 86
+N I+ G LL+DT L ++ + + + V +H+H+D VGG+
Sbjct: 38 SNGLIVRDGDELLLIDTAW-GAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR 96
Query: 87 -KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
+ + +P + + + +G E +P + + G ++ L P
Sbjct: 97 AAGVATYASPSTRRLAEAEGNE---------IPTHSLEGLSSSGDAVRFGPVEL---FYP 144
Query: 146 G--HTTDHIVLKLEEENVVFSGDTI-----LGEGTTVFSDLISYIESLRRIRSLKP--DI 196
G H+TD++V+ + NV++ G + G +DL + S+ RI+ P ++
Sbjct: 145 GAAHSTDNLVVYVPSANVLYGGCAVHELSRTSAGNVADADLAEWPTSVERIQKHYPEAEV 204
Query: 197 IYPAHG 202
+ P HG
Sbjct: 205 VIPGHG 210
>pdb|4EXS|B Chain B, Crystal Structure Of Ndm-1 Bound To L-Captopril
pdb|4EXS|A Chain A, Crystal Structure Of Ndm-1 Bound To L-Captopril
pdb|4EXY|A Chain A, Crystal Structure Of Ndm-1 Bound To Ethylene Glycol
pdb|4EXY|B Chain B, Crystal Structure Of Ndm-1 Bound To Ethylene Glycol
pdb|4EYL|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Meropenem
pdb|4EYL|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Meropenem
Length = 272
Score = 37.0 bits (84), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGG 85
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG
Sbjct: 74 ASNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGG 128
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT---- 138
+ + +A I + A + P+ V +LT VE AT
Sbjct: 129 MDALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNF 177
Query: 139 --LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 178 GPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 210
>pdb|4EY2|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Methicillin
pdb|4EY2|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Methicillin
pdb|4EYF|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed
Benzylpenicillin
pdb|4EYF|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed
Benzylpenicillin
pdb|4EYB|A Chain A, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Oxacillin
pdb|4EYB|B Chain B, Crystal Structure Of Ndm-1 Bound To Hydrolyzed Oxacillin
Length = 270
Score = 36.6 bits (83), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGG 85
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG
Sbjct: 74 ASNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGG 128
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT---- 138
+ + +A I + A + P+ V +LT VE AT
Sbjct: 129 MDALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNF 177
Query: 139 --LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 178 GPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 210
>pdb|1KO2|A Chain A, Vim-2, A Zn-Beta-Lactamase From Pseudomonas Aeruginosa
With An Oxidized Cys (Cysteinesulfonic)
Length = 230
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL---- 86
+N I+ G LL+DT L ++ + + + V +H+H+D VGG+
Sbjct: 38 SNGLIVRDGDELLLIDTAW-GAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR 96
Query: 87 -KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
+ + +P + + + +G E +P + + G ++ L P
Sbjct: 97 AAGVATYASPSTRRLAEVEGNE---------IPTHSLEGLSSSGDAVRFGPVEL---FYP 144
Query: 146 G--HTTDHIVLKLEEENVVFSGDTIL-----GEGTTVFSDLISYIESLRRIRSLKPD--I 196
G H+TD++V+ + +V++ G I G +DL + S+ RI+ P+
Sbjct: 145 GAAHSTDNLVVYVPSASVLYGGXAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQF 204
Query: 197 IYPAHG 202
+ P HG
Sbjct: 205 VIPGHG 210
>pdb|2YZ3|A Chain A, Crystallographic Investigation Of Inhibition Mode Of The
Vim-2 Metallo-Beta-Lactamase From Pseudomonas Aeruginosa
With Mercaptocarboxylate Inhibitor
pdb|2YZ3|B Chain B, Crystallographic Investigation Of Inhibition Mode Of The
Vim-2 Metallo-Beta-Lactamase From Pseudomonas Aeruginosa
With Mercaptocarboxylate Inhibitor
Length = 266
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 46/225 (20%), Positives = 92/225 (40%), Gaps = 37/225 (16%)
Query: 2 SAKIPNVSQLSSRVIRVLGMNPGPMTLQGTNTY----------ILGTGSRRLLLDTGEPD 51
S + P VS++ +R+ + G + T ++ I+ G LL+DT
Sbjct: 30 SGEYPTVSEIPVGEVRLYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTAW-G 88
Query: 52 HMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL-----KDIFEHINPDSATIWKFKGT 106
L ++ + + + V +H+H+D VGG+ + + +P + + + +G
Sbjct: 89 AKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGN 148
Query: 107 EKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG--HTTDHIVLKLEEENVVFS 164
E +P + + G ++ L PG H+TD++V+ + +V++
Sbjct: 149 E---------IPTHSLEGLSSSGDAVRFGPVEL---FYPGAAHSTDNLVVYVPSASVLYG 196
Query: 165 GDTIL-----GEGTTVFSDLISYIESLRRIRSLKPD--IIYPAHG 202
G I G +DL + S+ RI+ P+ + P HG
Sbjct: 197 GCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQFVIPGHG 241
>pdb|3FCZ|A Chain A, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
pdb|3FCZ|B Chain B, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
Length = 222
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/193 (24%), Positives = 87/193 (45%), Gaps = 39/193 (20%)
Query: 35 ILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE- 91
+L T +L+D+ D + E IE +++ K + +++H H D +GG+K + E
Sbjct: 40 VLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQKR---VTDAIITHAHADRIGGIKTLKER 96
Query: 92 ----HINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHT 144
H +A + K G E+ D T+ N V+T G+
Sbjct: 97 GIKAHSTALTAELAKKNGYEEPLGDLQTVTNLKFGNMKVETFYPGK-------------- 142
Query: 145 PGHTTDHIVLKLEEENVVFSGDTI-------LGEGTTVF-SDLISYIESL-RRIRSLKPD 195
GHT D+IV+ L + N++ G + LG + ++ + IE++ +R R++ +
Sbjct: 143 -GHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYVNEWSTSIENVSKRYRNI--N 199
Query: 196 IIYPAHGPVVEVG 208
+ P+HG V + G
Sbjct: 200 AVVPSHGEVGDKG 212
>pdb|3SPU|A Chain A, Apo Ndm-1 Crystal Structure
pdb|3SPU|B Chain B, Apo Ndm-1 Crystal Structure
pdb|3SPU|C Chain C, Apo Ndm-1 Crystal Structure
pdb|3SPU|D Chain D, Apo Ndm-1 Crystal Structure
pdb|3SPU|E Chain E, Apo Ndm-1 Crystal Structure
Length = 265
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 49 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 103
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 104 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 152
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 153 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 184
>pdb|1KO3|A Chain A, Vim-2, A Zn-Beta-Lactamase From Pseudomonas Aeruginosa
With Cys221 Reduced
Length = 230
Score = 36.2 bits (82), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 27/186 (14%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL---- 86
+N I+ G LL+DT L ++ + + + V +H+H+D VGG+
Sbjct: 38 SNGLIVRDGDELLLIDTAW-GAKNTAALLAEIEKQIGLPVTRAVSTHFHDDRVGGVDVLR 96
Query: 87 -KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
+ + +P + + + +G E +P + + G ++ L P
Sbjct: 97 AAGVATYASPSTRRLAEVEGNE---------IPTHSLEGLSSSGDAVRFGPVEL---FYP 144
Query: 146 G--HTTDHIVLKLEEENVVFSGDTIL-----GEGTTVFSDLISYIESLRRIRSLKPD--I 196
G H+TD++V+ + +V++ G I G +DL + S+ RI+ P+
Sbjct: 145 GAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLAEWPTSIERIQQHYPEAQF 204
Query: 197 IYPAHG 202
+ P HG
Sbjct: 205 VIPGHG 210
>pdb|4GYQ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|C Chain C, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
pdb|4GYQ|D Chain D, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
D223a Mutant From Klebsiella Pneumoniae
Length = 243
Score = 36.2 bits (82), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 48 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 102
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 103 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 151
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 152 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 183
>pdb|4H0D|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4H0D|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Mn From
Klebsiella Pneumoniae
pdb|4HL1|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL1|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1,
Complexed With Cd And Ampicillin
pdb|4HL2|A Chain A, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HL2|B Chain B, New Delhi Metallo-Beta-Lactamase-1 1.05 A Structure
Complexed With Hydrolyzed Ampicillin
pdb|4HKY|A Chain A, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
pdb|4HKY|B Chain B, New Delhi Metallo-beta-lactamase-1, Complexed With Cd And
Faropenem
Length = 243
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 48 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 102
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 103 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 151
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 152 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 183
>pdb|3S0Z|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
pdb|3S0Z|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase
(Ndm-1)
Length = 224
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 29 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 83
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 84 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 132
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 133 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 164
>pdb|3Q6X|A Chain A, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
pdb|3Q6X|B Chain B, Crystal Structure Of Ndm-1 In Complex With Hydrolyzed
Ampicillin
Length = 243
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 48 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 102
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 103 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 151
Query: 139 -LRVIH-TPGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 152 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 183
>pdb|3ZR9|A Chain A, Structure Of New Delhi Metallo-Beta-Lactamase 1 (Ndm-1)
Length = 231
Score = 36.2 bits (82), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 36 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 90
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 91 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 139
Query: 139 -LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 140 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 171
>pdb|3RKK|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3RKK|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pneumoniae
pdb|3SBL|A Chain A, Crystal Structure Of New Delhi Metal-Beta-Lactamase-1 From
Klebsiella Pneumoniae
pdb|3SRX|A Chain A, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SRX|B Chain B, New Delhi Metallo-Beta-Lactamase-1 Complexed With Cd
pdb|3SFP|A Chain A, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|B Chain B, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|C Chain C, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
pdb|3SFP|D Chain D, Crystal Structure Of The Mono-Zinc-Boundform Of New Delhi
Metallo- Beta-Lactamase-1 From Klebsiella Pneumoniae
Length = 237
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 42 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 96
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 97 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 145
Query: 139 -LRVIH-TPGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 146 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 177
>pdb|3RKJ|A Chain A, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
pdb|3RKJ|B Chain B, Crystal Structure Of New Delhi Metallo-Beta-Lactamase-1
From Klebsiella Pnueumoniae
Length = 235
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 42/152 (27%), Positives = 69/152 (45%), Gaps = 30/152 (19%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGGL 86
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG+
Sbjct: 40 SNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGGM 94
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT----- 138
+ +A I + A + P+ V +LT VE AT
Sbjct: 95 DALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNFG 143
Query: 139 -LRVIH-TPGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 144 PLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 175
>pdb|3A4Y|A Chain A, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|B Chain B, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|C Chain C, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3A4Y|D Chain D, Crystal Structure Of H61a Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 35.8 bits (81), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 38/151 (25%), Positives = 67/151 (44%), Gaps = 19/151 (12%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+ ++L G RR+LLD G E N + ++ ++L+H DHVG L +F
Sbjct: 15 SAHLLLAGGRRVLLDCGMFQGKEEARN-HAPFGFDPKEVDAVLLTHAALDHVGRLPKLFR 73
Query: 92 H-----INPDSATIWKFKGTEKDEAQATD---FVPEN-----KTVQTLTDGQLLKVEGAT 138
+ AT+ + +D + D F PE+ ++ L G+ L++ +
Sbjct: 74 EGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGALS 133
Query: 139 L---RVIHTPGHTTDHIVLKLEEENVVFSGD 166
L + H PG + +V + E +V+SGD
Sbjct: 134 LAFGQAGHLPG--SAFVVAQGEGRTLVYSGD 162
>pdb|3PG4|A Chain A, The Crystal Structure Of New Delhi Metallo-Beta Lactamase
(Ndm-1)
Length = 230
Score = 35.4 bits (80), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 42/153 (27%), Positives = 69/153 (45%), Gaps = 30/153 (19%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN--KESISL--EHIVLSHWHNDHVGG 85
+N I+ G R L++DT D + Q+LN K+ I+L V++H H D +GG
Sbjct: 27 ASNGLIVRDGGRVLVVDTAWTD-----DQTAQILNWIKQEINLPVALAVVTHAHQDKMGG 81
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV---QTLTDGQLLKVEGAT---- 138
+ + +A I + A + P+ V +LT VE AT
Sbjct: 82 MDALH------AAGIATYA-----NALSNQLAPQEGMVAAQHSLTFAANGWVEPATAPNF 130
Query: 139 --LRVIHT-PGHTTDHIVLKLEEENVVFSGDTI 168
L+V + PGHT+D+I + ++ ++ F G I
Sbjct: 131 GPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLI 163
>pdb|2FHX|A Chain A, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
pdb|2FHX|B Chain B, Pseudomonas Aeruginosa Spm-1 Metallo-Beta-Lactamase
Length = 246
Score = 35.0 bits (79), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 33/153 (21%), Positives = 64/153 (41%), Gaps = 31/153 (20%)
Query: 76 SHWHNDHVGGLKDIFEHINPDSATIW--------KFKGTEKDEAQATDF----------- 116
+H+H D GG +I++ + A W + + +KD +A +F
Sbjct: 75 THFHLDGTGG-NEIYKKM---GAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRIL 130
Query: 117 ----VPENKTVQTLTDGQLLKVEGATLRV-IHTPGHTTDHIVLKLEEENVVFSGDTILGE 171
VP + V L G++ + V P H+ D++V+ ++ ++F G I +
Sbjct: 131 SSHPVPAD-NVFDLKQGKVFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGXMIKPK 189
Query: 172 GTTVFSD--LISYIESLRRIRSLKPDIIYPAHG 202
D + ++ +S RR++ I+ P HG
Sbjct: 190 ELGYLGDANVKAWPDSARRLKKFDAKIVIPGHG 222
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 34.7 bits (78), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 40 SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT 99
+ L+DT P + E L + ++ + SH+H+D GG++ + P A+
Sbjct: 42 AEAYLIDT--PFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYAS 99
Query: 100 IWKFKGTEKD-EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE 158
+ +KD + QAT+ + + V+ PGHT D++V+ L E
Sbjct: 100 ELTNELLKKDGKVQATN---------SFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE 150
Query: 159 ENVVFSGDTI--LGEGTTVFSDLISYIESLRRIRSL--KPDIIYPAHGPVVEVGL 209
++F G I G G +++ ++ +S + ++S K ++ P+H V + L
Sbjct: 151 RKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASL 205
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 34.3 bits (77), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 40 SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT 99
+ L+DT P + E L + ++ + SH+H+D GG++ + P A+
Sbjct: 42 AEAYLIDT--PFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYAS 99
Query: 100 IWKFKGTEKD-EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE 158
+ +KD + QAT+ + + V+ PGHT D++V+ L E
Sbjct: 100 ELTNELLKKDGKVQATN---------SFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE 150
Query: 159 ENVVFSGDTI--LGEGTTVFSDLISYIESLRRIRSL--KPDIIYPAHGPVVEVGL 209
++F G I G G +++ ++ +S + ++S K ++ P+H V + L
Sbjct: 151 RKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASL 205
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 34.3 bits (77), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 40/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 40 SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT 99
+ L+DT P + E L + ++ + SH+H+D GG++ + P A+
Sbjct: 41 AEAYLIDT--PFTAKDTEKLVTWFVERGYKIKGSISSHFHSDSTGGIEWLNSRSIPTYAS 98
Query: 100 IWKFKGTEKD-EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE 158
+ +KD + QAT+ + + V+ PGHT D++V+ L E
Sbjct: 99 ELTNELLKKDGKVQATN---------SFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE 149
Query: 159 ENVVFSGDTI--LGEGTTVFSDLISYIESLRRIRSL--KPDIIYPAHGPVVEVGL 209
++F G I G G +++ ++ +S + ++S K ++ P+H V + L
Sbjct: 150 RKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASL 204
>pdb|1VME|A Chain A, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga
Maritima At 1.80 A Resolution
pdb|1VME|B Chain B, Crystal Structure Of Flavoprotein (Tm0755) From Thermotoga
Maritima At 1.80 A Resolution
Length = 410
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 11/138 (7%)
Query: 32 NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIF 90
N Y++ +L+D + ++ E+I+ L ++++ + I+ HI+++H DH G L
Sbjct: 53 NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEIT--HIIVNHTEPDHSGSLPATL 110
Query: 91 EHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTT 149
+ I D I G E K V + DG+ ++ G + + TP H
Sbjct: 111 KTIGHDVEIIASNFGKRLLEGFYG-----IKDVTVVKDGEEREIGGKKFKFVXTPWLHWP 165
Query: 150 DHIVLKLEEENVVFSGDT 167
D V L + ++FS D
Sbjct: 166 DTXVTYL--DGILFSCDV 181
>pdb|4EFZ|A Chain A, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
pdb|4EFZ|B Chain B, Crystal Structure Of A Hypothetical Metallo-Beta-Lactamase
From Burkholderia Pseudomallei
Length = 298
Score = 33.1 bits (74), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 37/85 (43%), Gaps = 14/85 (16%)
Query: 124 QTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE--------ENVVFSGDTIL----GE 171
+ L DG L + ++R +HTPGHT + + E + F GDT+ G
Sbjct: 124 RLLDDGDTLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFMPDYGT 183
Query: 172 GTTVF--SDLISYIESLRRIRSLKP 194
F D S S+R++ SL P
Sbjct: 184 ARCDFPGGDARSLYRSIRKVLSLPP 208
>pdb|1WUO|A Chain A, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
(d81a)
pdb|1WUO|B Chain B, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
(d81a)
pdb|1WUO|C Chain C, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
(d81a)
pdb|1WUO|D Chain D, Crystal Structure Of Metallo-beta-lactamase Imp-1 Mutant
(d81a)
Length = 228
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 4/69 (5%)
Query: 145 PGHTTDHIVLKLEEENVVFSGDTI--LGEGTTVFSDLISYIESLRRIRSL--KPDIIYPA 200
PGHT D++V+ L E ++F G I G G +++ ++ +S + ++S K ++ P+
Sbjct: 137 PGHTPDNVVVWLPERKILFGGXFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPS 196
Query: 201 HGPVVEVGL 209
H V + L
Sbjct: 197 HSEVGDASL 205
>pdb|2NVO|A Chain A, Crystal Structure Of Deinococcus Radiodurans Ro (Rsr)
Protein
Length = 535
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 36/84 (42%), Gaps = 12/84 (14%)
Query: 74 VLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD---EAQA-------TDFVPENKTV 123
L W G+ +++E + D +W K +D +A A TD N +
Sbjct: 145 ALGGWGRLTRRGVANVYETADVDKLALWAVKYKARDGWSQADALRKAHPKTDDAARNAVL 204
Query: 124 QTLTDGQLLKVEGATLRVIHTPGH 147
+ + DG L KV+ LRVI GH
Sbjct: 205 KFMVDGVLPKVDSPALRVIE--GH 226
>pdb|1WUP|A Chain A, Crystal Structure Of Metallo-Beta-Lactamase Imp-1 Mutant
(D81e)
pdb|1WUP|B Chain B, Crystal Structure Of Metallo-Beta-Lactamase Imp-1 Mutant
(D81e)
pdb|1WUP|C Chain C, Crystal Structure Of Metallo-Beta-Lactamase Imp-1 Mutant
(D81e)
pdb|1WUP|D Chain D, Crystal Structure Of Metallo-Beta-Lactamase Imp-1 Mutant
(D81e)
Length = 228
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 39/175 (22%), Positives = 78/175 (44%), Gaps = 16/175 (9%)
Query: 40 SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT 99
+ L+DT P + E L + ++ + SH+H++ GG++ + P A+
Sbjct: 42 AEAYLIDT--PFTAKDTEKLVTWFVERGYKIKGSISSHFHSESTGGIEWLNSRSIPTYAS 99
Query: 100 IWKFKGTEKD-EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE 158
+ +KD + QAT+ + + V+ PGHT D++V+ L E
Sbjct: 100 ELTNELLKKDGKVQATN---------SFSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPE 150
Query: 159 ENVVFSGDTI--LGEGTTVFSDLISYIESLRRIRSL--KPDIIYPAHGPVVEVGL 209
++F G I G G +++ ++ +S + ++S K ++ P+H V + L
Sbjct: 151 RKILFGGCFIKPYGLGNLGDANIEAWPKSAKLLKSKYGKAKLVVPSHSEVGDASL 205
>pdb|1ZTC|A Chain A, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|B Chain B, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|C Chain C, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
pdb|1ZTC|D Chain D, Crystal Structure Of A Putative Metallo-Beta-Lactamase
(Tm0894) From Thermotoga Maritima At 2.10 A Resolution
Length = 221
Score = 32.7 bits (73), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 34/154 (22%), Positives = 65/154 (42%), Gaps = 16/154 (10%)
Query: 23 PGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDH 82
PG + + L RR+++D G + +E L + ++ +H H DH
Sbjct: 27 PGRLNAHFSTVVYLEHKDRRIIIDPGNLSSXDELEEKFSELGISPDDITDVLFTHVHLDH 86
Query: 83 VGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVP---ENKTVQTLTDGQLLKVEGA-- 137
IF + ++AT + + + + + +K + + + LLK E +
Sbjct: 87 ------IFNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLF 140
Query: 138 --TLRVIHTPGHTTDHIVLKLEEEN---VVFSGD 166
++V HTP H +H+ L+ EN V+ +GD
Sbjct: 141 DEKVKVFHTPWHAREHLSFLLDTENAGRVLITGD 174
>pdb|4AX0|B Chain B, Q157a Mutant. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 84/210 (40%), Gaps = 35/210 (16%)
Query: 25 PMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------EYIENLKQVLNKESISLEHI 73
P+ + G NT+ +GT LL T + H+ + + N++ L + I
Sbjct: 43 PLKVYG-NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQILANIR-ALGFRPEDVRAI 100
Query: 74 VLSHWHNDHVGGLKDIFEHIN-------PDSATIWKFKGTEKDEA-QATDFVPENKTVQT 125
V SH H DH G L ++ + P T+ + D A + + V + T
Sbjct: 101 VFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDPAFEVAEPVAPVANIVT 160
Query: 126 LTDGQLLKVEGATLRVIHTPGHT---TDHIVLKLEEENV---VFSGD-TILGEGTTVFSD 178
L D ++ V L + +PGHT T E ++ V++ T + + +SD
Sbjct: 161 LADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSD 220
Query: 179 -------LISYIESLRRIRSLKPDIIYPAH 201
L ++ +L R+ +L DI+ H
Sbjct: 221 DAAHPGYLAAFRNTLARVAALDCDILVTPH 250
>pdb|2Y8B|A Chain A, Vim-7 With Oxidised. Structural And Computational
Investigations Of Vim-7: Insights Into The Substrate
Specificity Of Vim Metallo-Beta-Lactamases
Length = 265
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 27 TLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
T+ +N I+ LL+DT + L ++ + + + + +H+H+D VGG+
Sbjct: 64 TVYSSNGLIVRDADELLLIDTAW-GAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGV 122
Query: 87 -----KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRV 141
+ + +P + + + G E VP + + G +++ + V
Sbjct: 123 DVLRAAGVATYTSPLTRQLAEAAGNE---------VPAHSLKALSSSGDVVRF--GPVEV 171
Query: 142 IHTPG--HTTDHIVLKLEEENVVFSGDTI-----LGEGTTVFSDLISYIESLRRIRSLKP 194
+ PG H+ D++V+ + V+F G + G ++L + +++RI+ P
Sbjct: 172 FY-PGAAHSGDNLVVYVPAVRVLFGGXAVHEASRESAGNVADANLAEWPATIKRIQQRYP 230
Query: 195 --DIIYPAHG 202
+++ P HG
Sbjct: 231 EAEVVIPGHG 240
>pdb|2Y87|A Chain A, Native Vim-7. Structural And Computational Investigations
Of Vim-7: Insights Into The Substrate Specificity Of Vim
Metallo-Beta-Lactamases
pdb|2Y8A|A Chain A, Vim-7 With Oxidised. Structural And Computational
Investigations Of Vim-7: Insights Into The Substrate
Specificity Of Vim Metallo-Beta-Lactamases
Length = 265
Score = 32.3 bits (72), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 37/190 (19%), Positives = 82/190 (43%), Gaps = 27/190 (14%)
Query: 27 TLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
T+ +N I+ LL+DT + L ++ + + + + +H+H+D VGG+
Sbjct: 64 TVYSSNGLIVRDADELLLIDTAW-GAKNTVALLAEIEKQIGLPVTRSISTHFHDDRVGGV 122
Query: 87 -----KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRV 141
+ + +P + + + G E VP + + G +++ + V
Sbjct: 123 DVLRAAGVATYTSPLTRQLAEAAGNE---------VPAHSLKALSSSGDVVRF--GPVEV 171
Query: 142 IHTPG--HTTDHIVLKLEEENVVFSGDTI-----LGEGTTVFSDLISYIESLRRIRSLKP 194
+ PG H+ D++V+ + V+F G + G ++L + +++RI+ P
Sbjct: 172 FY-PGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANLAEWPATIKRIQQRYP 230
Query: 195 --DIIYPAHG 202
+++ P HG
Sbjct: 231 EAEVVIPGHG 240
>pdb|1SML|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia
pdb|2AIO|A Chain A, Metallo Beta Lactamase L1 From Stenotrophomonas
Maltophilia Complexed With Hydrolyzed Moxalactam
pdb|2FM6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FM6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Native Form)
pdb|2FU6|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU6|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Apo Form)
pdb|2FU7|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU7|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Cu- Substituted Form)
pdb|2FU8|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU8|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(D-Captopril Complex)
pdb|2FU9|A Chain A, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2FU9|B Chain B, Zinc-Beta-Lactamase L1 From Stenotrophomonas Maltophilia
(Mp2 Inhibitor Complex)
pdb|2GFJ|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFJ|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 1)
pdb|2GFK|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2GFK|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 2)
pdb|2H6A|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2H6A|B Chain B, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Mono Zinc Form)
pdb|2HB9|A Chain A, Crystal Structure Of The Zinc-Beta-Lactamase L1 From
Stenotrophomonas Maltophilia (Inhibitor 3)
pdb|2QDT|A Chain A, Structural Basis For The Broad-Spectrum Inhibition Of
Metallo-{beta}- Lactamases: L1- Is38 Complex
Length = 269
Score = 32.0 bits (71), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 40/176 (22%), Positives = 68/176 (38%), Gaps = 17/176 (9%)
Query: 43 LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH------INPD 96
+LLD G P ++ + + L I+LSH H DH G + ++ N +
Sbjct: 50 VLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAELKRRTGAKVAANAE 109
Query: 97 SATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEG----ATLRVIHTPGHTTDHI 152
SA + G++ P + + DG+++ V G A HTPG T
Sbjct: 110 SAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTW 169
Query: 153 VLKLEEENV-VFSGDTILG-----EGTTVFSDLI-SYIESLRRIRSLKPDIIYPAH 201
+ V + D++ +G + LI Y S +R+L D++ H
Sbjct: 170 TDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPH 225
>pdb|1L9Y|A Chain A, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
pdb|1L9Y|B Chain B, Fez-1-Y228a, A Mutant Of The Metallo-Beta-Lactamase From
Legionella Gormanii
Length = 263
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 69/164 (42%), Gaps = 24/164 (14%)
Query: 73 IVLSHWHNDHVGGLKDIFEH-------INPDSATIWKFKGTEKDEAQATD---FVPENKT 122
+++SH H DH G + I + ++ D + I G + D A D + ++
Sbjct: 67 LLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVI--LSGGKSDFHYANDSSTYFTQSTV 124
Query: 123 VQTLTDGQLLKVEGATLRVIHTPGHTTDHI--VLKLEEENVVFSGDTILGEGTTVFSDLI 180
+ L DG+ +++ G L TPGHT +KL++ + I G + L+
Sbjct: 125 DKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGAKLV 184
Query: 181 ----------SYIESLRRIRSLKPDIIYPAHGPVVEVGLSFSLM 214
Y S++ + S++ DI +H + ++ + L+
Sbjct: 185 DNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDLKNKYVLL 228
>pdb|4AX1|B Chain B, Q157n Mutant. Crystal Structure Of The Mobile
Metallo-Beta- Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 82/210 (39%), Gaps = 35/210 (16%)
Query: 25 PMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------EYIENLKQVLNKESISLEHI 73
P+ + G NT+ +GT LL T + H+ + + N++ L + I
Sbjct: 43 PLKVYG-NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQILANIR-ALGFRPEDVRAI 100
Query: 74 VLSHWHNDHVGGLKDIFEH----INPDSATIWKFKGTEKDEA----QATDFVPENKTVQT 125
V SH H DH G L ++ + + + I K D + + V + T
Sbjct: 101 VFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDPNFEVAEPVAPVANIVT 160
Query: 126 LTDGQLLKVEGATLRVIHTPGHT---TDHIVLKLEEENV--VFSGDTILGEGTTVF--SD 178
L D ++ V L + +PGHT T E ++ + D++ VF SD
Sbjct: 161 LADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSD 220
Query: 179 -------LISYIESLRRIRSLKPDIIYPAH 201
L ++ +L R+ +L DI+ H
Sbjct: 221 DAAHPGYLAAFRNTLARVAALDCDILVTPH 250
>pdb|3AJ0|A Chain A, Crystal Structure Of 4-Pyridoxolactonase From
Mesorhizobium Loti
Length = 268
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 49/201 (24%), Positives = 81/201 (40%), Gaps = 50/201 (24%)
Query: 42 RLLLDTG-EPDHM--------------EYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
R L+DTG + DH+ + I +L E ++ +V SH+H DH GG
Sbjct: 46 RFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGN 105
Query: 87 KDIFEHIN--------PDSATIWKFK---------GTEKDEAQ-ATDFVPENKTVQTLT- 127
K F H P + F+ E EA+ AT + E T T
Sbjct: 106 K-YFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTF 164
Query: 128 ---DGQLLKVEGATLRVIHTPGHTTDHIVLKLE---EENVVFSGDTILGEGT-------T 174
DG + G +++I TPGH+ H L +E + ++F+ D + +
Sbjct: 165 EGIDGDVDLARG--VKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAA 222
Query: 175 VFSDLISYIESLRRIRSLKPD 195
D ++ + S+R+++ L D
Sbjct: 223 FHIDPVAGVNSMRKVKKLAED 243
>pdb|4AWY|B Chain B, Crystal Structure Of The Mobile Metallo-Beta-Lactamase
Aim-1 From Pseudomonas Aeruginosa: Insights Into
Antibiotic Binding And The Role Of Gln157
pdb|4AWZ|A Chain A, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|B Chain B, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
pdb|4AWZ|C Chain C, Aim-1-3mol. Crystal Structure Of The Mobile
Metallo-Beta-Lactamase Aim-1 From Pseudomonas
Aeruginosa: Insights Into Antibiotic Binding And The
Role Of Gln157
Length = 303
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 48/210 (22%), Positives = 83/210 (39%), Gaps = 35/210 (16%)
Query: 25 PMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------EYIENLKQVLNKESISLEHI 73
P+ + G NT+ +GT LL T + H+ + + N++ L + I
Sbjct: 43 PLKVYG-NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQILANIR-ALGFRPEDVRAI 100
Query: 74 VLSHWHNDHVGGLKDIFEH----INPDSATIWKFKGTEKD----EAQATDFVPENKTVQT 125
V SH H DH G L ++ + + + I K D + + + V + T
Sbjct: 101 VFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDPQFEVAEPVAPVANIVT 160
Query: 126 LTDGQLLKVEGATLRVIHTPGHT---TDHIVLKLEEENV--VFSGDTILGEGTTVF--SD 178
L D ++ V L + +PGHT T E ++ + D++ VF SD
Sbjct: 161 LADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSD 220
Query: 179 -------LISYIESLRRIRSLKPDIIYPAH 201
L ++ +L R+ +L DI+ H
Sbjct: 221 DAAHPGYLAAFRNTLARVAALDCDILVTPH 250
>pdb|2GCU|A Chain A, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|B Chain B, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|C Chain C, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
pdb|2GCU|D Chain D, X-Ray Structure Of Gene Product From Arabidopsis Thaliana
At1g53580
Length = 245
Score = 31.2 bits (69), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 39/153 (25%), Positives = 63/153 (41%), Gaps = 26/153 (16%)
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN 120
+++++ + L + + +H H DHV G + + + I K G++ D
Sbjct: 45 KLIDELGLKLIYAMNTHVHADHVTGTGLLKTKLPGVKSVISKASGSKAD----------- 93
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE------ENVVFSGDTIL--GEG 172
L G + + L V TPGHT + E + F+GD +L G G
Sbjct: 94 ---LFLEPGDKVSIGDIYLEVRATPGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCG 150
Query: 173 TTVFSDLIS---YIESLRRIRSLKPD-IIYPAH 201
T F + S Y +I +L D +IYPAH
Sbjct: 151 RTDFQEGSSDQLYESVHSQIFTLPKDTLIYPAH 183
>pdb|2I7T|A Chain A, Structure Of Human Cpsf-73
pdb|2I7V|A Chain A, Structure Of Human Cpsf-73
Length = 459
Score = 30.8 bits (68), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
G + IL R+++LD G +E ++ L + + ++ +++SH+H DH G L
Sbjct: 24 GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGAL 80
>pdb|1ZKP|A Chain A, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|B Chain B, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|C Chain C, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
pdb|1ZKP|D Chain D, 1.5a Resolution Crystal Structure Of A Metallo Beta
Lactamase Family Protein, The Elac Homolgue Of Bacillus
Anthracis, A Putative Ribonuclease
Length = 268
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 37/76 (48%), Gaps = 7/76 (9%)
Query: 10 QLSSRVIRVLGMNPG-PMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESI 68
Q ++ V+G G P + T+ Y+ RLL+D G + L++ + I
Sbjct: 21 QSNAXKXTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGS----GVLAQLQKYITPSDI 76
Query: 69 SLEHIVLSHWHNDHVG 84
+ +VLSH+H+DHV
Sbjct: 77 --DAVVLSHYHHDHVA 90
>pdb|1JT1|A Chain A, Fez-1 Metallo-Beta-Lactamase From Legionella Gormanii
Modelled With D- Captopril
pdb|1K07|A Chain A, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
pdb|1K07|B Chain B, Native Fez-1 Metallo-beta-lactamase From Legionella
Gormanii
Length = 263
Score = 30.4 bits (67), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 35/164 (21%), Positives = 68/164 (41%), Gaps = 24/164 (14%)
Query: 73 IVLSHWHNDHVGGLKDIFEH-------INPDSATIWKFKGTEKDEAQATD---FVPENKT 122
+++SH H DH G + I + ++ D + I G + D A D + ++
Sbjct: 67 LLISHAHFDHAAGSELIKQQTKAKYMVMDEDVSVI--LSGGKSDFHYANDSSTYFTQSTV 124
Query: 123 VQTLTDGQLLKVEGATLRVIHTPGHTTDHI--VLKLEEENVVFSGDTILGEGTTVFSDLI 180
+ L DG+ +++ G L TPGHT +KL++ + I G L+
Sbjct: 125 DKVLHDGERVELGGTVLTAHLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLV 184
Query: 181 ----------SYIESLRRIRSLKPDIIYPAHGPVVEVGLSFSLM 214
Y S++ + S++ DI +H + ++ + L+
Sbjct: 185 DNITYPKIAEDYKHSIKVLESMRCDIFLGSHAGMFDLKNKYVLL 228
>pdb|1QH3|A Chain A, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH3|B Chain B, Human Glyoxalase Ii With Cacodylate And Acetate Ions
Present In The Active Site
pdb|1QH5|A Chain A, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
pdb|1QH5|B Chain B, Human Glyoxalase Ii With
S-(N-Hydroxy-N-Bromophenylcarbamoyl) Glutathione
Length = 260
Score = 30.0 bits (66), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 27/120 (22%), Positives = 49/120 (40%), Gaps = 19/120 (15%)
Query: 64 NKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTV 123
K + L ++ +H H DH GG + + + + + + G ++ A
Sbjct: 41 RKHGVKLTTVLTTHHHWDHAGGNEKLVKL----ESGLKVYGGDDRIGA----------LT 86
Query: 124 QTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKL-----EEENVVFSGDTILGEGTTVFSD 178
+T L+V ++ + TP HT+ HI + E VF+GDT+ G F +
Sbjct: 87 HKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCGKFYE 146
>pdb|3AJ3|A Chain A, Crystal Structure Of Selenomethionine Substituted
4-Pyridoxolactonase From Mesorhizobium Loti
Length = 274
Score = 30.0 bits (66), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 48/201 (23%), Positives = 81/201 (40%), Gaps = 50/201 (24%)
Query: 42 RLLLDTG-EPDHMEYIENLKQ--------------VLNKESISLEHIVLSHWHNDHVGGL 86
R L+DTG + DH+ + ++ +L E ++ +V SH+H DH GG
Sbjct: 46 RFLIDTGYDYDHVXKVLPFEKPIQEKHQTIPGALGLLGLEPRDIDVVVNSHFHFDHCGGN 105
Query: 87 KDIFEHIN--------PDSATIWKFK---------GTEKDEAQ-ATDFVPENKTVQTLT- 127
K F H P + F+ E EA+ AT + E T T
Sbjct: 106 K-YFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQLLEGTTRANSTF 164
Query: 128 ---DGQLLKVEGATLRVIHTPGHTTDHIVLKLE---EENVVFSGDTILGEGT-------T 174
DG + G +++I TPGH+ H L +E + ++F+ D + +
Sbjct: 165 EGIDGDVDLARG--VKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQKSLETLCQAA 222
Query: 175 VFSDLISYIESLRRIRSLKPD 195
D ++ + S R+++ L D
Sbjct: 223 FHIDPVAGVNSXRKVKKLAED 243
>pdb|2QJS|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
pdb|2QJS|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Asn Mutant
Length = 269
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 17/176 (9%)
Query: 43 LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH------INPD 96
+LLD G P ++ + + L I+LSH H +H G + ++ N +
Sbjct: 50 VLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHANHAGPVAELKRRTGAKVAANAE 109
Query: 97 SATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEG----ATLRVIHTPGHTTDHI 152
SA + G++ P + + DG+++ V G A HTPG T
Sbjct: 110 SAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTW 169
Query: 153 VLKLEEENV-VFSGDTILG-----EGTTVFSDLI-SYIESLRRIRSLKPDIIYPAH 201
+ V + D++ +G + LI Y S +R+L D++ H
Sbjct: 170 TDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPH 225
>pdb|2Q9U|A Chain A, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
pdb|2Q9U|B Chain B, Crystal Structure Of The Flavodiiron Protein From Giardia
Intestinalis
Length = 414
Score = 30.0 bits (66), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 56/137 (40%), Gaps = 9/137 (6%)
Query: 32 NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
N+Y + ++ P E++ + + I +++V++H DH LKD +
Sbjct: 42 NSYFIDDECPTVIDSVKYPFAEEWLSRIAACCPLDKI--KYVVMNHAEGDHASSLKDHYH 99
Query: 92 HINPDSATIWKFKGTEK-DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP-GHTT 149
+AT F T+K E + E T + D LK+ TL+ I P H
Sbjct: 100 KFT--NAT---FVCTKKCQEHLKILYGMEKATWLIVDDKYTLKIGKRTLKFIPVPLLHWP 154
Query: 150 DHIVLKLEEENVVFSGD 166
D E+ ++FS D
Sbjct: 155 DSTFTYCPEDKILFSND 171
>pdb|3ZQ4|A Chain A, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|C Chain C, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|D Chain D, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
pdb|3ZQ4|E Chain E, Unusual, Dual Endo- And Exo-Nuclease Activity In The
Degradosome Explained By Crystal Structure Analysis Of
Rnase J1
Length = 555
Score = 29.6 bits (65), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Query: 30 GTNTYILGTGSRRLLLDTG------EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHV 83
G NTY + +L+D G E ++Y+ L K ++ + ++H H DH+
Sbjct: 21 GKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVKNEDKIKGLFITHGHEDHI 80
Query: 84 GGLKDIFEHIN 94
GG+ + +N
Sbjct: 81 GGIPYLLRQVN 91
>pdb|3QSB|B Chain B, Structure Of E. Coli Poliiibeta With
(Z)-5-(1-((4'-Fluorobiphenyl-4-
Yl)methoxyimino)butyl)-2,2-Dimethyl-4,
6-Dioxocyclohexanecarbonitrile
Length = 366
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+ T K +AT F ++ V+ +G L + EG LR + T GH
Sbjct: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175
>pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of
Escherichia Coli Dna Polymerase Iii Holoenzyme: A
Sliding Dna Clamp
pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of
Escherichia Coli Dna Polymerase Iii Holoenzyme: A
Sliding Dna Clamp
pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit
pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit
pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little
Finger Domain Of Poliv
pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little
Finger Domain Of Poliv
pdb|1OK7|A Chain A, A Conserved Protein Binding-site On Bacterial Sliding
Clamps
pdb|1OK7|B Chain B, A Conserved Protein Binding-site On Bacterial Sliding
Clamps
pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna
pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna
pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Ii Peptide
pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Ii Peptide
pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Iii Peptide
pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
A Polymerase Iii Peptide
pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna
Sliding Clamp
pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna
Sliding Clamp
pdb|3QSB|A Chain A, Structure Of E. Coli Poliiibeta With
(Z)-5-(1-((4'-Fluorobiphenyl-4-
Yl)methoxyimino)butyl)-2,2-Dimethyl-4,
6-Dioxocyclohexanecarbonitrile
pdb|3Q4J|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4J|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4J|C Chain C, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4J|D Chain D, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4J|E Chain E, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4J|F Chain F, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4K|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4K|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
Length = 366
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+ T K +AT F ++ V+ +G L + EG LR + T GH
Sbjct: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175
>pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
Subunit Wrench Of The Clamp Loader Complex Of E. Coli
Dna Polymerase Iii: Structure Of The Beta-Delta Complex
Length = 366
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+ T K +AT F ++ V+ +G L + EG LR + T GH
Sbjct: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175
>pdb|3Q4L|A Chain A, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
pdb|3Q4L|B Chain B, Structure Of A Small Peptide Ligand Bound To E.Coli Dna
Sliding Clamp
Length = 368
Score = 29.6 bits (65), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+ T K +AT F ++ V+ +G L + EG LR + T GH
Sbjct: 134 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 177
>pdb|3PWE|A Chain A, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
pdb|3PWE|B Chain B, Crystal Structure Of The E. Coli Beta Clamp Mutant R103c,
I305c, C260s, C333s At 2.2a Resolution
Length = 366
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 15/44 (34%), Positives = 23/44 (52%)
Query: 104 KGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+ T K +AT F ++ V+ +G L + EG LR + T GH
Sbjct: 132 QATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELRTVATDGH 175
>pdb|2QIN|A Chain A, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|B Chain B, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|C Chain C, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
pdb|2QIN|D Chain D, Stenotrophomonas Maltophilia L1 Metallo-Beta-Lactamase
Asp-120 Cys Mutant
Length = 269
Score = 28.9 bits (63), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 39/176 (22%), Positives = 67/176 (38%), Gaps = 17/176 (9%)
Query: 43 LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH------INPD 96
+LLD G P ++ + + L I+LSH H H G + ++ N +
Sbjct: 50 VLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHACHAGPVAELKRRTGAKVAANAE 109
Query: 97 SATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEG----ATLRVIHTPGHTTDHI 152
SA + G++ P + + DG+++ V G A HTPG T
Sbjct: 110 SAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHFMAGHTPGSTAWTW 169
Query: 153 VLKLEEENV-VFSGDTILG-----EGTTVFSDLI-SYIESLRRIRSLKPDIIYPAH 201
+ V + D++ +G + LI Y S +R+L D++ H
Sbjct: 170 TDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRALPCDVLLTPH 225
>pdb|1M2X|A Chain A, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|B Chain B, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|C Chain C, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
pdb|1M2X|D Chain D, Crystal Structure Of The Metallo-beta-lactamase Blab Of
Chryseobacterium Meningosepticum In Complex With The
Inhibitor D- Captopril
Length = 223
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 43/98 (43%), Gaps = 13/98 (13%)
Query: 74 VLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENK--TVQTLTDGQL 131
+ +H H+D GGL E+ A + K T+ + ENK T + +
Sbjct: 69 IATHSHDDRAGGL----EYFGKIGAKTYSTKMTD------SILAKENKPRAQYTFDNNKS 118
Query: 132 LKVEGATLRVIH-TPGHTTDHIVLKLEEENVVFSGDTI 168
KV + +V + GHT D++V+ +E V+ G I
Sbjct: 119 FKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCII 156
>pdb|3DHA|A Chain A, An Ultral High Resolution Structure Of N-Acyl Homoserine
Lactone Hydrolase With The Product
N-Hexanoyl-L-Homoserine Bound At An Alternative Site
pdb|3DHB|A Chain A, 1.4 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homoserine Bound
At The Catalytic Metal Center
pdb|3DHC|A Chain A, 1.3 Angstrom Structure Of N-Acyl Homoserine Lactone
Hydrolase With The Product N-Hexanoyl-L-Homocysteine
Bound To The Catalytic Metal Center
Length = 254
Score = 28.1 bits (61), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 31/173 (17%)
Query: 20 GMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------------------EYI 56
+ PG + Y+L T +L+DTG P+ + I
Sbjct: 28 ALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRI 87
Query: 57 ENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDF 116
N+ + + E L +I+ SH H DH GG F + P +++ E +
Sbjct: 88 VNILKRVGYEPDDLLYIISSHLHFDHAGG-NGAFTN-TPIIVQRTEYEAALHREEYMKEC 145
Query: 117 VPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL 169
+ + + + +G V G L ++TPGH+ H L +E E SG +L
Sbjct: 146 ILPHLNYK-IIEGDYEVVPGVQL--LYTPGHSPGHQSLFIETEQ---SGSVLL 192
>pdb|1WW1|A Chain A, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|1WW1|B Chain B, Crystal Structure Of Trnase Z From Thermotoga Maritima
pdb|2E7Y|A Chain A, High Resolution Structure Of T. Maritima Trnase Z
pdb|2E7Y|B Chain B, High Resolution Structure Of T. Maritima Trnase Z
Length = 280
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 42 RLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
R+L D GE + L + + +++ L+H H DH+ GL
Sbjct: 21 RILFDAGE--------GVSTTLGSKVYAFKYVFLTHGHVDHIAGL 57
>pdb|2A7M|A Chain A, 1.6 Angstrom Resolution Structure Of The Quorum-Quenching
N-Acyl Homoserine Lactone Hydrolase Of Bacillus
Thuringiensis
Length = 250
Score = 27.7 bits (60), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 40/173 (23%), Positives = 67/173 (38%), Gaps = 31/173 (17%)
Query: 20 GMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------------------EYI 56
+ PG + Y+L T +L+DTG P+ + I
Sbjct: 24 ALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRI 83
Query: 57 ENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDF 116
N+ + + E L +I+ SH H DH GG F + P +++ E +
Sbjct: 84 VNILKRVGYEPDDLLYIISSHLHFDHAGG-NGAFTN-TPIIVQRTEYEAALHREEYMKEC 141
Query: 117 VPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL 169
+ + + + +G V G L ++TPGH+ H L +E E SG +L
Sbjct: 142 ILPHLNYK-IIEGDYEVVPGVQL--LYTPGHSPGHQSLFIETEQ---SGSVLL 188
>pdb|2R2D|A Chain A, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|B Chain B, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|C Chain C, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|D Chain D, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|E Chain E, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
pdb|2R2D|F Chain F, Structure Of A Quorum-Quenching Lactonase (Aiib) From
Agrobacterium Tumefaciens
Length = 276
Score = 27.3 bits (59), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 15/32 (46%), Positives = 22/32 (68%), Gaps = 3/32 (9%)
Query: 57 ENLKQV-LNKESISLEHIVLSHWHNDHVGGLK 87
E L+Q+ L+ + IS +VLSH HNDH G ++
Sbjct: 92 ERLRQLGLSPDDIST--VVLSHLHNDHAGCVE 121
>pdb|3H3E|A Chain A, Crystal Structure Of Tm1679, A Metal-Dependent Hydrolase
Of The Beta-Lactamase Superfamily
Length = 267
Score = 26.9 bits (58), Expect = 7.7, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 43 LLLDTGEPDHMEYIENLKQVLNKESISL-EHIVLSHWHNDHVGGL 86
+L DTG+ D +++N +++ I L + +++SH H DH GGL
Sbjct: 40 VLFDTGKSD--VFLKNARKL----GIDLPKDVLISHGHYDHAGGL 78
>pdb|2GSN|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSN|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE
pdb|2GSO|A Chain A, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSO|B Chain B, Structure Of Xac Nucleotide
PyrophosphatasePHOSPHODIESTERASE IN COMPLEX WITH
VANADATE
pdb|2GSU|A Chain A, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2GSU|B Chain B, Structure Of Xac Nucleotide
Pyrophosphatase/phosphodiesterase In Complex With Amp
pdb|2RH6|A Chain A, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
pdb|2RH6|B Chain B, Structure Of Xac Npp For Evaluation Of Refinement
Methodology
Length = 393
Score = 26.9 bits (58), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
Query: 6 PNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIEN 58
PN+S L+ +R M P +L N Y L TG R PDH + N
Sbjct: 28 PNLSHLAREGVRARWMAPSYPSLTFPNHYTLVTGLR--------PDHHGIVHN 72
>pdb|2II1|A Chain A, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|B Chain B, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|C Chain C, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
pdb|2II1|D Chain D, Crystal Structure Of Acetamidase (10172637) From Bacillus
Halodurans At 1.95 A Resolution
Length = 301
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 15/64 (23%)
Query: 154 LKLEEENVVF-------------SGDTILGEGTTVFSDLISYIESLRRIRSLKPDIIYPA 200
++L EN +F SGDT++ E FSD I+ E + + S+ + + PA
Sbjct: 3 IRLSNENTIFFXDKENVPIASCQSGDTVIFETKDCFSDQITNEE--QALTSIDFNRVNPA 60
Query: 201 HGPV 204
GP+
Sbjct: 61 TGPL 64
>pdb|2BR6|A Chain A, Crystal Structure Of Quorum-Quenching N-Acyl Homoserine
Lactone Lactonase
pdb|2BTN|A Chain A, Crystal Structure And Catalytic Mechanism Of The Quorum-
Quenching N-Acyl Homoserine Lactone Hydrolase
Length = 252
Score = 26.6 bits (57), Expect = 10.0, Method: Compositional matrix adjust.
Identities = 22/89 (24%), Positives = 34/89 (38%), Gaps = 23/89 (25%)
Query: 20 GMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM-----------------------EYI 56
+ PG + Y+L T +L+DTG P+ + I
Sbjct: 26 ALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRI 85
Query: 57 ENLKQVLNKESISLEHIVLSHWHNDHVGG 85
N+ + + E L +I+ SH H DH GG
Sbjct: 86 VNILKRVGYEPDDLLYIISSHLHFDHAGG 114
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.135 0.391
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,781,034
Number of Sequences: 62578
Number of extensions: 288000
Number of successful extensions: 1076
Number of sequences better than 100.0: 134
Number of HSP's better than 100.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 95
Number of HSP's that attempted gapping in prelim test: 958
Number of HSP's gapped (non-prelim): 150
length of query: 216
length of database: 14,973,337
effective HSP length: 95
effective length of query: 121
effective length of database: 9,028,427
effective search space: 1092439667
effective search space used: 1092439667
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 49 (23.5 bits)