Query psy1547
Match_columns 216
No_of_seqs 129 out of 1754
Neff 10.0
Searched_HMMs 46136
Date Fri Aug 16 21:52:13 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1547.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1547hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR03413 GSH_gloB hydroxyacyl 100.0 1.5E-29 3.2E-34 196.8 19.0 157 31-207 10-170 (248)
2 PLN02398 hydroxyacylglutathion 100.0 3.8E-29 8.2E-34 199.3 18.3 159 31-207 87-250 (329)
3 PLN02469 hydroxyacylglutathion 100.0 1.6E-28 3.5E-33 191.4 19.1 158 30-206 10-179 (258)
4 PLN02962 hydroxyacylglutathion 100.0 1.5E-27 3.2E-32 184.7 18.1 156 30-203 22-193 (251)
5 PRK10241 hydroxyacylglutathion 100.0 2.8E-27 6.1E-32 184.2 18.1 155 31-206 11-170 (251)
6 PRK11921 metallo-beta-lactamas 100.0 3.8E-27 8.1E-32 194.9 16.6 191 10-208 2-230 (394)
7 KOG0813|consensus 99.9 5.1E-25 1.1E-29 168.0 17.7 165 28-204 10-180 (265)
8 PRK05452 anaerobic nitric oxid 99.9 2.6E-25 5.6E-30 187.1 16.8 191 9-207 3-233 (479)
9 COG0491 GloB Zn-dependent hydr 99.9 1.2E-23 2.6E-28 163.6 18.9 170 30-203 24-212 (252)
10 smart00849 Lactamase_B Metallo 99.9 2.2E-23 4.8E-28 154.9 17.6 166 29-201 4-183 (183)
11 COG0426 FpaA Uncharacterized f 99.9 1.4E-23 3E-28 168.2 15.5 193 7-207 3-228 (388)
12 PF00753 Lactamase_B: Metallo- 99.9 5.6E-23 1.2E-27 153.3 10.8 167 30-201 5-194 (194)
13 PF14597 Lactamase_B_5: Metall 99.8 1.3E-19 2.7E-24 129.5 13.4 172 13-209 7-188 (199)
14 KOG0814|consensus 99.8 1.6E-17 3.4E-22 117.9 11.9 156 31-204 21-184 (237)
15 TIGR00649 MG423 conserved hypo 99.7 1.6E-17 3.4E-22 139.0 12.7 142 27-170 10-162 (422)
16 PRK11539 ComEC family competen 99.7 7.8E-16 1.7E-20 136.7 16.8 155 30-210 510-675 (755)
17 TIGR00361 ComEC_Rec2 DNA inter 99.7 2.2E-15 4.7E-20 132.3 16.6 159 30-210 449-617 (662)
18 COG2015 Alkyl sulfatase and re 99.7 2.7E-16 5.9E-21 127.5 9.5 196 6-210 108-356 (655)
19 COG2333 ComEC Predicted hydrol 99.6 1.4E-14 3E-19 113.9 14.3 164 31-211 54-226 (293)
20 COG1237 Metal-dependent hydrol 99.6 6.8E-14 1.5E-18 106.2 16.6 173 31-207 22-236 (259)
21 PRK00685 metal-dependent hydro 99.6 4E-15 8.6E-20 114.7 9.0 161 30-205 7-196 (228)
22 PRK11244 phnP carbon-phosphoru 99.6 3.3E-14 7.2E-19 111.1 12.5 129 28-169 34-165 (250)
23 PRK02113 putative hydrolase; P 99.6 3.4E-14 7.4E-19 111.2 12.1 165 28-202 32-223 (252)
24 TIGR03307 PhnP phosphonate met 99.6 6.1E-14 1.3E-18 108.8 12.0 127 29-168 25-154 (238)
25 TIGR02651 RNase_Z ribonuclease 99.5 1.3E-13 2.9E-18 110.4 12.0 126 26-157 13-147 (299)
26 TIGR02649 true_RNase_BN ribonu 99.5 3E-13 6.5E-18 108.6 13.5 129 23-157 9-149 (303)
27 TIGR03675 arCOG00543 arCOG0054 99.5 1.6E-14 3.5E-19 125.2 5.7 140 27-169 184-349 (630)
28 COG0595 mRNA degradation ribon 99.5 2.6E-13 5.7E-18 115.0 11.2 145 24-170 15-170 (555)
29 PRK05184 pyrroloquinoline quin 99.4 1.2E-12 2.7E-17 104.7 11.0 134 27-167 35-199 (302)
30 PRK04286 hypothetical protein; 99.4 1E-12 2.2E-17 105.0 9.7 136 30-168 14-187 (298)
31 TIGR02108 PQQ_syn_pqqB coenzym 99.4 2.3E-12 5.1E-17 102.8 10.8 132 29-168 36-200 (302)
32 COG1236 YSH1 Predicted exonucl 99.4 7.9E-13 1.7E-17 110.3 7.5 133 29-167 12-164 (427)
33 PRK02126 ribonuclease Z; Provi 99.3 1.7E-11 3.7E-16 99.2 11.3 118 30-157 15-172 (334)
34 PF12706 Lactamase_B_2: Beta-l 99.3 1.7E-12 3.7E-17 97.4 4.4 124 42-169 2-140 (194)
35 PF13483 Lactamase_B_3: Beta-l 99.3 1.2E-11 2.5E-16 90.5 7.3 135 30-201 6-163 (163)
36 COG1782 Predicted metal-depend 99.3 1.8E-11 3.8E-16 100.5 7.6 142 22-168 185-354 (637)
37 PRK00055 ribonuclease Z; Revie 99.3 2.8E-11 6.1E-16 95.5 8.6 77 25-106 14-94 (270)
38 KOG4736|consensus 99.2 3E-11 6.5E-16 93.0 7.1 157 31-212 95-265 (302)
39 PRK11709 putative L-ascorbate 99.2 2.3E-10 4.9E-15 93.2 10.6 133 69-205 109-286 (355)
40 COG2248 Predicted hydrolase (m 99.2 8.2E-10 1.8E-14 83.4 11.6 168 33-201 17-247 (304)
41 COG2220 Predicted Zn-dependent 99.0 4.2E-09 9.2E-14 82.7 9.9 170 30-203 13-213 (258)
42 KOG1136|consensus 98.9 2.4E-09 5.3E-14 84.1 5.8 138 28-167 14-179 (501)
43 KOG1137|consensus 98.9 2.9E-09 6.2E-14 88.4 4.9 139 27-167 23-182 (668)
44 KOG1135|consensus 98.8 2.8E-08 6E-13 84.5 8.9 134 30-167 14-172 (764)
45 COG1234 ElaC Metal-dependent h 98.7 6.3E-08 1.4E-12 77.2 7.3 76 24-104 13-92 (292)
46 COG1235 PhnP Metal-dependent h 98.6 6.5E-07 1.4E-11 70.8 11.7 47 41-94 41-87 (269)
47 TIGR02650 RNase_Z_T_toga ribon 98.2 7.8E-06 1.7E-10 64.1 8.2 67 31-106 10-82 (277)
48 KOG2121|consensus 98.0 2.2E-06 4.8E-11 74.0 1.7 67 23-93 453-525 (746)
49 KOG1361|consensus 97.8 3.6E-05 7.8E-10 64.3 5.9 91 69-167 112-205 (481)
50 PF02112 PDEase_II: cAMP phosp 97.3 0.0051 1.1E-07 49.9 11.0 38 69-106 79-119 (335)
51 PF14234 DUF4336: Domain of un 97.2 0.011 2.3E-07 46.8 11.9 154 13-169 2-160 (285)
52 KOG3798|consensus 96.5 0.015 3.3E-07 44.8 7.3 137 28-171 85-243 (343)
53 PF13691 Lactamase_B_4: tRNase 96.2 0.016 3.5E-07 34.9 4.8 49 32-85 13-63 (63)
54 COG5212 PDE1 Low-affinity cAMP 94.5 0.05 1.1E-06 42.5 3.7 99 69-167 112-232 (356)
55 KOG3592|consensus 92.7 0.2 4.3E-06 44.3 4.6 53 35-92 52-104 (934)
56 COG0420 SbcD DNA repair exonuc 71.6 5.9 0.00013 33.1 4.0 54 159-213 42-97 (390)
57 PF14572 Pribosyl_synth: Phosp 58.6 14 0.00031 27.4 3.4 51 30-92 83-133 (184)
58 PRK08699 DNA polymerase III su 57.6 21 0.00045 29.2 4.5 53 37-92 111-163 (325)
59 PRK02269 ribose-phosphate pyro 50.1 25 0.00055 28.7 3.9 32 44-80 226-257 (320)
60 PRK07199 phosphoribosylpyropho 46.5 24 0.00053 28.5 3.2 31 44-79 220-250 (301)
61 PRK04923 ribose-phosphate pyro 45.7 31 0.00067 28.2 3.7 32 44-80 226-257 (319)
62 PLN02297 ribose-phosphate pyro 44.3 28 0.0006 28.5 3.2 31 44-79 239-269 (326)
63 COG0052 RpsB Ribosomal protein 43.8 38 0.00083 26.5 3.7 40 39-84 157-196 (252)
64 cd00840 MPP_Mre11_N Mre11 nucl 43.2 31 0.00067 25.8 3.3 49 159-208 43-93 (223)
65 PF09370 TIM-br_sig_trns: TIM- 41.9 15 0.00032 29.0 1.3 29 186-214 205-233 (268)
66 PRK00553 ribose-phosphate pyro 41.3 35 0.00075 28.0 3.4 41 39-80 218-258 (332)
67 PRK05707 DNA polymerase III su 40.7 47 0.001 27.2 4.1 54 36-92 103-156 (328)
68 PRK08769 DNA polymerase III su 40.6 39 0.00085 27.6 3.6 52 38-92 112-163 (319)
69 PRK10098 putative dehydrogenas 40.2 1.2E+02 0.0027 25.1 6.5 57 33-93 71-131 (350)
70 PF13177 DNA_pol3_delta2: DNA 40.0 55 0.0012 23.6 4.0 40 38-77 101-140 (162)
71 COG2974 RdgC DNA recombination 37.9 35 0.00077 27.0 2.8 47 22-68 115-162 (303)
72 COG0462 PrsA Phosphoribosylpyr 37.8 60 0.0013 26.4 4.1 41 30-80 214-254 (314)
73 cd08166 MPP_Cdc1_like_1 unchar 36.9 69 0.0015 24.1 4.1 31 158-191 43-73 (195)
74 PRK02458 ribose-phosphate pyro 35.0 50 0.0011 27.0 3.4 32 44-80 227-258 (323)
75 COG0541 Ffh Signal recognition 34.0 1.1E+02 0.0024 26.2 5.2 49 39-92 214-263 (451)
76 PRK06090 DNA polymerase III su 33.9 62 0.0013 26.4 3.7 53 37-92 106-158 (319)
77 PRK15025 ureidoglycolate dehyd 33.4 1.9E+02 0.0041 24.0 6.5 56 34-93 68-127 (349)
78 cd07400 MPP_YydB Bacillus subt 32.9 80 0.0017 21.8 3.9 12 159-170 37-48 (144)
79 cd00839 MPP_PAPs purple acid p 32.7 60 0.0013 25.6 3.5 46 159-204 35-81 (294)
80 PF07521 RMMBL: RNA-metabolisi 31.7 64 0.0014 17.5 2.5 25 177-204 18-42 (43)
81 TIGR00040 yfcE phosphoesterase 31.5 1.9E+02 0.0041 20.4 5.9 13 69-81 106-118 (158)
82 cd07409 MPP_CD73_N CD73 ecto-5 31.2 2.7E+02 0.0058 22.1 11.2 60 39-102 48-113 (281)
83 TIGR03175 AllD ureidoglycolate 31.2 2.1E+02 0.0046 23.7 6.5 56 34-93 68-127 (349)
84 COG1105 FruK Fructose-1-phosph 31.2 2.6E+02 0.0057 22.8 6.8 68 10-84 75-144 (310)
85 PRK06871 DNA polymerase III su 30.9 77 0.0017 26.0 3.8 54 36-92 104-157 (325)
86 PRK13260 2,3-diketo-L-gulonate 30.5 1.9E+02 0.0042 23.8 6.1 57 33-93 67-127 (332)
87 COG1869 RbsD ABC-type ribose t 29.9 1.4E+02 0.003 20.9 4.3 19 60-78 85-103 (135)
88 PTZ00145 phosphoribosylpyropho 29.5 68 0.0015 27.5 3.4 32 44-80 344-375 (439)
89 PRK07399 DNA polymerase III su 29.4 94 0.002 25.3 4.1 53 36-92 121-173 (314)
90 PRK09112 DNA polymerase III su 29.3 98 0.0021 25.6 4.3 53 37-92 139-191 (351)
91 TIGR00619 sbcd exonuclease Sbc 29.2 69 0.0015 25.0 3.3 46 159-205 41-89 (253)
92 PRK06964 DNA polymerase III su 29.2 92 0.002 25.7 4.1 53 37-92 130-182 (342)
93 PLN00105 malate/L-lactate dehy 28.9 2.5E+02 0.0054 23.1 6.5 56 34-93 57-117 (330)
94 PRK00129 upp uracil phosphorib 28.8 1.8E+02 0.004 21.9 5.4 62 39-107 124-186 (209)
95 COG3897 Predicted methyltransf 28.8 1.2E+02 0.0025 23.1 4.1 51 159-214 143-193 (218)
96 PRK07993 DNA polymerase III su 28.5 77 0.0017 26.0 3.5 54 36-92 105-158 (334)
97 TIGR01091 upp uracil phosphori 28.1 1.6E+02 0.0035 22.2 5.0 62 39-107 122-184 (207)
98 COG2101 SPT15 TATA-box binding 27.2 1.6E+02 0.0034 21.9 4.4 33 148-190 51-83 (185)
99 PRK07471 DNA polymerase III su 27.1 1.1E+02 0.0024 25.4 4.3 41 38-78 140-180 (365)
100 PF07796 DUF1638: Protein of u 27.1 1.3E+02 0.0027 21.8 4.1 36 37-72 116-151 (166)
101 COG2179 Predicted hydrolase of 26.9 63 0.0014 23.8 2.4 137 1-156 1-137 (175)
102 cd07406 MPP_CG11883_N Drosophi 26.7 3.1E+02 0.0067 21.4 9.3 59 40-102 38-102 (257)
103 TIGR00282 metallophosphoestera 26.0 1.4E+02 0.0031 23.7 4.4 11 69-79 169-179 (266)
104 cd07383 MPP_Dcr2 Saccharomyces 25.5 1.2E+02 0.0027 22.4 4.0 11 159-169 43-53 (199)
105 PRK11148 cyclic 3',5'-adenosin 24.7 1.2E+02 0.0027 23.8 4.0 39 159-203 57-97 (275)
106 cd07393 MPP_DR1119 Deinococcus 24.0 1.4E+02 0.003 22.9 4.1 9 159-167 43-51 (232)
107 PF10411 DsbC_N: Disulfide bon 23.6 1.2E+02 0.0027 17.5 2.9 18 151-168 34-51 (57)
108 PRK07276 DNA polymerase III su 23.6 1.3E+02 0.0028 24.2 3.9 53 37-92 102-154 (290)
109 PRK12323 DNA polymerase III su 23.4 1.3E+02 0.0027 27.6 4.0 42 37-78 122-163 (700)
110 TIGR01917 gly_red_sel_B glycin 23.1 1.2E+02 0.0026 25.8 3.7 36 160-201 48-84 (431)
111 TIGR01918 various_sel_PB selen 22.5 1.3E+02 0.0028 25.7 3.7 36 160-201 48-84 (431)
112 COG5564 Predicted TIM-barrel e 22.4 1.1E+02 0.0024 23.6 3.1 38 177-214 201-239 (276)
113 PF02495 7kD_coat: 7kD viral c 22.4 1.8E+02 0.0038 17.0 3.6 20 147-166 22-41 (59)
114 cd06095 RP_RTVL_H_like Retrope 22.3 69 0.0015 20.2 1.8 16 35-50 4-19 (86)
115 PRK12457 2-dehydro-3-deoxyphos 21.9 2.5E+02 0.0053 22.6 5.0 43 40-84 191-246 (281)
116 PRK15047 N-hydroxyarylamine O- 21.9 1.7E+02 0.0038 23.4 4.3 41 8-51 87-127 (281)
117 PF10686 DUF2493: Protein of u 21.7 2.1E+02 0.0045 17.5 4.5 34 158-198 3-36 (71)
118 cd08165 MPP_MPPE1 human MPPE1 21.6 1.6E+02 0.0036 20.9 3.8 12 158-169 39-50 (156)
119 COG1107 Archaea-specific RecJ- 21.6 1.3E+02 0.0027 27.0 3.6 38 42-84 421-458 (715)
120 PF02542 YgbB: YgbB family; I 21.3 88 0.0019 22.7 2.3 33 122-154 8-41 (157)
121 KOG1378|consensus 20.9 1.3E+02 0.0028 25.9 3.5 41 159-200 176-216 (452)
122 PF01644 Chitin_synth_1: Chiti 20.9 1.2E+02 0.0026 22.1 2.9 23 39-61 139-161 (163)
123 PLN02369 ribose-phosphate pyro 20.8 2E+02 0.0044 23.2 4.5 41 39-80 202-242 (302)
124 PRK09453 phosphodiesterase; Pr 20.7 1.4E+02 0.003 21.8 3.3 10 159-168 29-38 (182)
125 PF07355 GRDB: Glycine/sarcosi 20.7 1.6E+02 0.0035 24.4 3.9 36 160-201 52-88 (349)
126 PRK05917 DNA polymerase III su 20.7 1.6E+02 0.0034 23.8 3.8 40 38-77 94-133 (290)
127 PHA02546 47 endonuclease subun 20.6 1.9E+02 0.004 23.8 4.4 46 159-205 41-90 (340)
128 cd07402 MPP_GpdQ Enterobacter 20.4 1.8E+02 0.0039 22.0 4.1 39 159-203 42-82 (240)
129 PF02879 PGM_PMM_II: Phosphogl 20.4 2.4E+02 0.0052 18.2 4.2 26 39-64 20-45 (104)
No 1
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.97 E-value=1.5e-29 Score=196.79 Aligned_cols=157 Identities=27% Similarity=0.515 Sum_probs=130.3
Q ss_pred ceEEEEecCC-ceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 31 TNTYILGTGS-RRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 31 ~n~~li~~~~-~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
.++|+|..++ +++|||+|.. ..+.+.+.+.+.++++|++||.|+||++|+..+.++++ +++|++....
T Consensus 10 N~~yli~~~~~~~ilID~g~~------~~i~~~l~~~g~~l~~Il~TH~H~DHigG~~~l~~~~~---~~V~~~~~~~-- 78 (248)
T TIGR03413 10 NYIWLLHDPDGQAAVVDPGEA------EPVLDALEARGLTLTAILLTHHHHDHVGGVAELLEAFP---APVYGPAEER-- 78 (248)
T ss_pred EEEEEEEcCCCCEEEEcCCCh------HHHHHHHHHcCCeeeEEEeCCCCccccCCHHHHHHHCC---CeEEeccccc--
Confidence 4578887765 7999999964 34556667667789999999999999999999998876 6788776431
Q ss_pred cccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCcccc--ccHHHHHHHHH
Q psy1547 110 EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVF--SDLISYIESLR 187 (216)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~~~~--~~~~~~~~~l~ 187 (216)
. ......+.+++++.+|+.+++++++||||+|++++++++.+++|+||+++..+...+ .+..+|.++|+
T Consensus 79 -------~--~~~~~~v~~g~~~~~g~~~i~v~~tpGHT~g~i~~~~~~~~~lftGDtl~~~g~g~~~~~~~~~~~~Sl~ 149 (248)
T TIGR03413 79 -------I--PGITHPVKDGDTVTLGGLEFEVLAVPGHTLGHIAYYLPDSPALFCGDTLFSAGCGRLFEGTPEQMYDSLQ 149 (248)
T ss_pred -------C--CCCcEEeCCCCEEEECCEEEEEEECCCCCcccEEEEECCCCEEEEcCccccCCcCCCCCCCHHHHHHHHH
Confidence 1 123467889999999999999999999999999999998999999999987654333 78999999999
Q ss_pred HHHcCCCC-eEEcCCCccccC
Q psy1547 188 RIRSLKPD-IIYPAHGPVVEV 207 (216)
Q Consensus 188 ~l~~~~~~-~v~pgHg~~~~~ 207 (216)
++.+++.+ .++||||+..+.
T Consensus 150 ~l~~l~~~~~i~pGH~~~~~n 170 (248)
T TIGR03413 150 RLAALPDDTLVYCAHEYTLSN 170 (248)
T ss_pred HHHcCCCCeEEECCCCchHHH
Confidence 99999998 589999987653
No 2
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.97 E-value=3.8e-29 Score=199.34 Aligned_cols=159 Identities=25% Similarity=0.354 Sum_probs=130.5
Q ss_pred ceEEEEecC--CceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 31 TNTYILGTG--SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 31 ~n~~li~~~--~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
.++|+|..+ +..++||+|.. +.+.+.+.+.+.+|++|++||.|+||+||+.+++++++ ++++.++....
T Consensus 87 Ny~Yli~d~~t~~~~vVDP~~a------~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~g---a~V~g~~~~~~ 157 (329)
T PLN02398 87 NYAYLLHDEDTGTVGVVDPSEA------VPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARYG---AKVIGSAVDKD 157 (329)
T ss_pred eEEEEEEECCCCEEEEEcCCCH------HHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhcC---CEEEEehHHhh
Confidence 459998653 46899999853 44666677778899999999999999999999999875 78888764322
Q ss_pred ccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCcc--ccccHHHHHHHH
Q psy1547 109 DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTT--VFSDLISYIESL 186 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~~--~~~~~~~~~~~l 186 (216)
.. + .....+++|+++.+|+.+++++++||||+|+++|++++.++||+||+++..+.. +..+.+++.++|
T Consensus 158 ~i-------~--~~d~~v~dGd~i~lgg~~l~vi~tPGHT~GhI~~~~~~~~vLFtGDtLf~~g~Gr~feg~~~~~~~SL 228 (329)
T PLN02398 158 RI-------P--GIDIVLKDGDKWMFAGHEVLVMETPGHTRGHISFYFPGSGAIFTGDTLFSLSCGKLFEGTPEQMLSSL 228 (329)
T ss_pred hc-------c--CCcEEeCCCCEEEECCeEEEEEeCCCcCCCCEEEEECCCCEEEECCCcCCCCcCCCCCCCHHHHHHHH
Confidence 11 1 235678899999999999999999999999999999888999999999876443 337899999999
Q ss_pred HHHHcCCCC-eEEcCCCccccC
Q psy1547 187 RRIRSLKPD-IIYPAHGPVVEV 207 (216)
Q Consensus 187 ~~l~~~~~~-~v~pgHg~~~~~ 207 (216)
+++.+++.+ .|+||||+..+.
T Consensus 229 ~rL~~L~~~t~VypGHgyt~~N 250 (329)
T PLN02398 229 QKIISLPDDTNIYCGHEYTLSN 250 (329)
T ss_pred HHHHcCCCCeEEECCCCChhcc
Confidence 999999888 688999997644
No 3
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.96 E-value=1.6e-28 Score=191.38 Aligned_cols=158 Identities=23% Similarity=0.361 Sum_probs=125.5
Q ss_pred Cce-EEEEecC--CceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCC
Q psy1547 30 GTN-TYILGTG--SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGT 106 (216)
Q Consensus 30 ~~n-~~li~~~--~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~ 106 (216)
..| +|+|..+ +.++|||||.. +.+.+.+++.+.+|++|++||.|+||+||+..++++++. ++++.+...
T Consensus 10 ~dNy~Yli~d~~~~~~vlIDp~~~------~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~~--~~V~~~~~~ 81 (258)
T PLN02469 10 EDNYAYLIIDESTKDAAVVDPVDP------EKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVPG--IKVYGGSLD 81 (258)
T ss_pred cceEEEEEEeCCCCeEEEECCCCh------HHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCCC--CEEEEechh
Confidence 467 9999754 47999999842 456666677778999999999999999999999999763 678876532
Q ss_pred CcccccccCCCCCCCceeecCCCCeEEECC-eeEEEEeCCCCCCCceEEEECC----CcEEEEcceecCCCcccc--ccH
Q psy1547 107 EKDEAQATDFVPENKTVQTLTDGQLLKVEG-ATLRVIHTPGHTTDHIVLKLEE----ENVVFSGDTILGEGTTVF--SDL 179 (216)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~i~~~~~pgHt~~~~~~~~~~----~~vl~~GD~~~~~~~~~~--~~~ 179 (216)
.. + .....+.+|+++.+|+ ..++++++||||+|++++++++ .++||+||+++..+...+ .+.
T Consensus 82 ~~---------~--~~~~~v~~gd~i~lg~~~~~~vi~tPGHT~ghi~~~~~~~~~~~~~lFtGDtLf~~g~Gr~~~g~~ 150 (258)
T PLN02469 82 NV---------K--GCTHPVENGDKLSLGKDVNILALHTPCHTKGHISYYVTGKEGEDPAVFTGDTLFIAGCGKFFEGTA 150 (258)
T ss_pred cC---------C--CCCeEeCCCCEEEECCceEEEEEECCCCCCCCEEEEeccCCCCCCEEEecCcccCCCcCCCCCCCH
Confidence 11 0 1235688999999985 6899999999999999999963 469999999887655433 789
Q ss_pred HHHHHHHHH-HHcCCCC-eEEcCCCcccc
Q psy1547 180 ISYIESLRR-IRSLKPD-IIYPAHGPVVE 206 (216)
Q Consensus 180 ~~~~~~l~~-l~~~~~~-~v~pgHg~~~~ 206 (216)
.++.+||++ +..++.+ .++|||++..+
T Consensus 151 ~~~~~Sl~~~l~~Lp~~t~vypGH~yt~~ 179 (258)
T PLN02469 151 EQMYQSLCVTLGSLPKPTQVYCGHEYTVK 179 (258)
T ss_pred HHHHHHHHHHHHcCCCCeEEEcCCCCchh
Confidence 999999985 5568766 89999998765
No 4
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.96 E-value=1.5e-27 Score=184.66 Aligned_cols=156 Identities=25% Similarity=0.330 Sum_probs=123.6
Q ss_pred CceEEEEec----CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCC
Q psy1547 30 GTNTYILGT----GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKG 105 (216)
Q Consensus 30 ~~n~~li~~----~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~ 105 (216)
++|||++.. +++++|||||... .+.+++.+++.+.+|++|++||.|.||++|+..++++++. ++++..+.
T Consensus 22 ~~~~Yll~d~~~~~~~avlIDP~~~~----~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~~--a~v~~~~~ 95 (251)
T PLN02962 22 STYTYLLADVSHPDKPALLIDPVDKT----VDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLPG--VKSIISKA 95 (251)
T ss_pred eeEEEEEEeCCCCCCEEEEECCCCCc----HHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCCC--CeEEeccc
Confidence 589999865 4679999998532 2445567777678899999999999999999999988753 56665432
Q ss_pred CCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECC------CcEEEEcceecCCCcccc---
Q psy1547 106 TEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE------ENVVFSGDTILGEGTTVF--- 176 (216)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~------~~vl~~GD~~~~~~~~~~--- 176 (216)
.. ......+++++++.+|+.+++++++||||+|++++++++ .+++|+||+++.......
T Consensus 96 ~~------------~~~d~~l~~g~~i~~g~~~l~vi~tPGHT~g~v~~~~~d~~~~~~~~~lftGD~Lf~~g~Gr~d~~ 163 (251)
T PLN02962 96 SG------------SKADLFVEPGDKIYFGDLYLEVRATPGHTAGCVTYVTGEGPDQPQPRMAFTGDALLIRGCGRTDFQ 163 (251)
T ss_pred cC------------CCCCEEeCCCCEEEECCEEEEEEECCCCCcCcEEEEeccCCCCCccceEEECCeeccCCcCCCCCC
Confidence 11 112356889999999999999999999999999999853 369999999887544332
Q ss_pred -ccHHHHHHHHH-HHHcCCCC-eEEcCCCc
Q psy1547 177 -SDLISYIESLR-RIRSLKPD-IIYPAHGP 203 (216)
Q Consensus 177 -~~~~~~~~~l~-~l~~~~~~-~v~pgHg~ 203 (216)
.+..++.++|+ ++..++.+ .|+||||.
T Consensus 164 ~g~~~~l~~Sl~~~l~~L~~~~~i~PGHg~ 193 (251)
T PLN02962 164 GGSSDQLYKSVHSQIFTLPKDTLIYPAHDY 193 (251)
T ss_pred CCCHHHHHHHHHHHHHcCCCCeEEECCCCC
Confidence 68899999996 68888888 79999994
No 5
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.96 E-value=2.8e-27 Score=184.23 Aligned_cols=155 Identities=31% Similarity=0.501 Sum_probs=125.0
Q ss_pred ce-EEEEec-CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 31 TN-TYILGT-GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 31 ~n-~~li~~-~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
.| +|++.. +++++|||+|.. +.+.+.+.+.+.++++|++||.|.||+||+..+.++++. ++++.+.....
T Consensus 11 dNy~~li~~~~~~~ilIDpg~~------~~vl~~l~~~g~~l~~IllTH~H~DHigG~~~l~~~~~~--~~V~~~~~~~~ 82 (251)
T PRK10241 11 DNYIWVLNDEAGRCLIVDPGEA------EPVLNAIAENNWQPEAIFLTHHHHDHVGGVKELVEKFPQ--IVVYGPQETQD 82 (251)
T ss_pred ceEEEEEEcCCCcEEEECCCCh------HHHHHHHHHcCCccCEEEeCCCCchhhccHHHHHHHCCC--CEEEecccccc
Confidence 44 577755 457899999964 446666777777899999999999999999999999863 67777543211
Q ss_pred ccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCccc--cccHHHHHHHH
Q psy1547 109 DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTV--FSDLISYIESL 186 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~~~--~~~~~~~~~~l 186 (216)
......+++|+.+.+|+.+++++++||||+|+++++. .+++|+||+++..+... -.+..++.+||
T Consensus 83 -----------~~~~~~v~~g~~i~ig~~~~~vi~tPGHT~ghi~~~~--~~~lFtGDtlf~~g~gr~f~g~~~~~~~Sl 149 (251)
T PRK10241 83 -----------KGTTQVVKDGETAFVLGHEFSVFATPGHTLGHICYFS--KPYLFCGDTLFSGGCGRLFEGTASQMYQSL 149 (251)
T ss_pred -----------cCCceEeCCCCEEEeCCcEEEEEEcCCCCccceeeec--CCcEEEcCeeccCCcCCCCCCCHHHHHHHH
Confidence 1224678899999999999999999999999999986 47899999998765433 36899999999
Q ss_pred HHHHcCCCC-eEEcCCCcccc
Q psy1547 187 RRIRSLKPD-IIYPAHGPVVE 206 (216)
Q Consensus 187 ~~l~~~~~~-~v~pgHg~~~~ 206 (216)
+++.+++++ +++|||++...
T Consensus 150 ~kl~~l~~~t~i~pgH~y~~~ 170 (251)
T PRK10241 150 KKINALPDDTLICCAHEYTLS 170 (251)
T ss_pred HHHHcCCCCEEEECCCCChhh
Confidence 999999998 58899998764
No 6
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.95 E-value=3.8e-27 Score=194.86 Aligned_cols=191 Identities=23% Similarity=0.332 Sum_probs=133.3
Q ss_pred ccccceEEeccCCCCc---------c-CCCCceEEEEecCCceEEEecCCCCCh-hHHHHHHHHHhhCCCCccEEEeccc
Q psy1547 10 QLSSRVIRVLGMNPGP---------M-TLQGTNTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHW 78 (216)
Q Consensus 10 ~v~~~v~~v~~~~~~~---------~-~~~~~n~~li~~~~~~iliD~g~~~~~-~~~~~~~~~l~~~~~~i~~v~~TH~ 78 (216)
+|.++||+|.-..... . .....|||+|.+ ++.+|||||..... ..++.+.+.++ ..+|++|++||.
T Consensus 2 ~i~~~v~~vg~~d~~~~~f~~~~~~~~~g~~~NsyLI~~-~~~vLIDtg~~~~~~~~~~~l~~~~~--~~~Id~IilTH~ 78 (394)
T PRK11921 2 KINDNVTWVGKIDWELRKFHGEEYSTHRGSSYNSYLIKD-EKTVLIDTVWQPFAKEFVENLKKEID--LDKIDYIVANHG 78 (394)
T ss_pred eecCCeEEEeeecCCcceecceEeecCCceEEEEEEEeC-CCEEEEeCCCCCcHHHHHHHHHhhcC--cccCCEEEeCCC
Confidence 6889999985332211 1 112368999985 56899999975432 23333333222 347999999999
Q ss_pred CccccCChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCC-CCCCceEEEEC
Q psy1547 79 HNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLE 157 (216)
Q Consensus 79 H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-Ht~~~~~~~~~ 157 (216)
|+||+||+..+.+.++. +++++++......... .....+...+++|+++.+|+.+++++++|| |+||+++++++
T Consensus 79 H~DHiggl~~l~~~~p~--a~V~~~~~~~~~l~~~---~~~~~~~~~v~~g~~l~lG~~~l~~i~tP~~H~p~~~~~y~~ 153 (394)
T PRK11921 79 EIDHSGALPELMKEIPD--TPIYCTKNGAKSLKGH---YHQDWNFVVVKTGDRLEIGSNELIFIEAPMLHWPDSMFTYLT 153 (394)
T ss_pred CCchhhHHHHHHHHCCC--CEEEECHHHHHHHHHH---hCCCCceEEeCCCCEEeeCCeEEEEEeCCCCCCCCceEEEEc
Confidence 99999999999888764 6788766433221110 111234677899999999999999999998 99999999999
Q ss_pred CCcEEEEcceecCCCc--ccccc----------------------HHHHHHHHHHHH--cCCCCeEEcCCCccccCc
Q psy1547 158 EENVVFSGDTILGEGT--TVFSD----------------------LISYIESLRRIR--SLKPDIIYPAHGPVVEVG 208 (216)
Q Consensus 158 ~~~vl~~GD~~~~~~~--~~~~~----------------------~~~~~~~l~~l~--~~~~~~v~pgHg~~~~~~ 208 (216)
+.++||+||++-.... ..+.+ ...+.+.++++. ++++++++|+||+.+++.
T Consensus 154 ~~~vLFsgD~fG~~~~~~~~~~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~l~~~~l~~~~i~p~HG~i~~~~ 230 (394)
T PRK11921 154 GDNILFSNDAFGQHYASELMYNDLVDQGELYQEAIKYYANILTPFSPLVIKKIEEILSLNLPVDMICPSHGVIWRDN 230 (394)
T ss_pred CCCEEEecCcccccccCcccccccccchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCCCEEEcCCccEEeCC
Confidence 9999999996432111 11111 124467788888 457899999999997763
No 7
>KOG0813|consensus
Probab=99.94 E-value=5.1e-25 Score=168.02 Aligned_cols=165 Identities=33% Similarity=0.516 Sum_probs=132.2
Q ss_pred CCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 28 LQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 28 ~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
.+..++||+.+++....+|.+.+..++.+....+.+.+...++.+|++||.|+||+||+..+.+.++. .+.++..+...
T Consensus 10 ~~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~~-~~~v~g~~~~r 88 (265)
T KOG0813|consen 10 LQDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIPY-DIKVIGGADDR 88 (265)
T ss_pred cCCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhccC-CcEEecCChhc
Confidence 34578999998788888888887766555555555444677899999999999999999999998652 26677664111
Q ss_pred cccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECC---CcEEEEcceecCCCcc-cc-ccHHHH
Q psy1547 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEE---ENVVFSGDTILGEGTT-VF-SDLISY 182 (216)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~---~~vl~~GD~~~~~~~~-~~-~~~~~~ 182 (216)
. +.-...+++++++.+||.+|+.++|||||.|+++|++.+ .+.+|+||+++..+.. .+ ...+++
T Consensus 89 ~-----------~~i~~~~~~~e~~~~~g~~v~~l~TPgHT~~hi~~~~~~~~~e~~iFtGDtlf~~GcG~~FEgt~~~M 157 (265)
T KOG0813|consen 89 I-----------PGITRGLKDGETVTVGGLEVRCLHTPGHTAGHICYYVTESTGERAIFTGDTLFGAGCGRFFEGTAEQM 157 (265)
T ss_pred C-----------ccccccCCCCcEEEECCEEEEEEeCCCccCCcEEEEeecCCCCCeEEeCCceeecCccchhcCCHHHH
Confidence 1 122344899999999999999999999999999999985 8999999999988773 55 667788
Q ss_pred HHHHHHHHcCCCC-eEEcCCCcc
Q psy1547 183 IESLRRIRSLKPD-IIYPAHGPV 204 (216)
Q Consensus 183 ~~~l~~l~~~~~~-~v~pgHg~~ 204 (216)
..+++.+..++.+ .++|||+.-
T Consensus 158 ~~sl~~l~~L~~~t~iypGHeYt 180 (265)
T KOG0813|consen 158 DSSLNELIALPDDTRIYPGHEYT 180 (265)
T ss_pred HHhHHHhhcCCCCceEccCcccc
Confidence 8899999999999 999999943
No 8
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.93 E-value=2.6e-25 Score=187.14 Aligned_cols=191 Identities=20% Similarity=0.270 Sum_probs=131.6
Q ss_pred cccccceEEeccCCCCc----------cCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhh-C-CCCccEEEec
Q psy1547 9 SQLSSRVIRVLGMNPGP----------MTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNK-E-SISLEHIVLS 76 (216)
Q Consensus 9 ~~v~~~v~~v~~~~~~~----------~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~-~-~~~i~~v~~T 76 (216)
.+|.++||+|.-..... ......|+|||.+ ++.+|||+|..... +.+.+.+.+ . ..+|++|++|
T Consensus 3 ~~i~~~vy~vg~~d~~~~~F~~~~~~~~~G~t~NsYLI~~-~~~vLIDtg~~~~~---~~~l~~l~~~~~~~~Id~IilT 78 (479)
T PRK05452 3 IHVKNNIHWVGQRDWEVRDFHGTEYKTLRGSSYNSYLIRE-EKNVLIDTVDHKFS---REFVQNLRNEIDLADIDYIVIN 78 (479)
T ss_pred EEecCCeEEEeeecCCccccccceeecCCCcEEEEEEEEC-CCEEEEeCCCcccH---HHHHHHHHhcCCHhhCCEEEeC
Confidence 45889999984221111 0112479999985 57899999965322 233333332 1 2479999999
Q ss_pred ccCccccCChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEEC-CeeEEEEeCCC-CCCCceEE
Q psy1547 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVE-GATLRVIHTPG-HTTDHIVL 154 (216)
Q Consensus 77 H~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~i~~~~~pg-Ht~~~~~~ 154 (216)
|.|+||+|++..+.++++. ++++.++......... .......+..+++|+++.+| +.+++++++|+ |+||++++
T Consensus 79 H~H~DH~Ggl~~Ll~~~p~--a~V~~s~~~~~~l~~~--~~~~~~~~~~v~~G~~l~lG~~~~l~~i~tP~~H~pgs~~~ 154 (479)
T PRK05452 79 HAEEDHAGALTELMAQIPD--TPIYCTANAIDSINGH--HHHPEWNFNVVKTGDTLDIGNGKQLIFVETPMLHWPDSMMT 154 (479)
T ss_pred CCCcchhchHHHHHHHCCC--CEEEECHHHHHHHHHh--hcCCcCeEEEeCCCCEEecCCCcEEEEEECCCCCCCCceEE
Confidence 9999999999999888753 6788765443222111 11112356789999999999 47999999997 99999999
Q ss_pred EECCCcEEEEcceecCCCcc--ccc---------------------c-HHHHHHHHHHHHc--CCCCeEEcCCCccccC
Q psy1547 155 KLEEENVVFSGDTILGEGTT--VFS---------------------D-LISYIESLRRIRS--LKPDIIYPAHGPVVEV 207 (216)
Q Consensus 155 ~~~~~~vl~~GD~~~~~~~~--~~~---------------------~-~~~~~~~l~~l~~--~~~~~v~pgHg~~~~~ 207 (216)
++++.++||+||++-..... .+. . ...++++|+++++ +++++++|+||+.+++
T Consensus 155 y~~~~~vLFsgD~fG~~~~~~~~f~d~~~~~~~~~~~~~y~~~i~~p~~~~v~~~l~~~~~l~l~~~~i~p~HG~i~r~ 233 (479)
T PRK05452 155 YLTGDAVLFSNDAFGQHYCDEHLFNDEVDQTELFEQCQRYYANILTPFSRLVTPKITEILGFNLPVDMIATSHGVVWRD 233 (479)
T ss_pred EEcCCCEEEecccccCCCCchhhhcccCchHHHHHHHHHHHHHhhhhhHHHHHHHHHHHhhcCCCCCEEECCCCceEeC
Confidence 99999999999963221110 110 0 1234678888884 5789999999998775
No 9
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.92 E-value=1.2e-23 Score=163.63 Aligned_cols=170 Identities=33% Similarity=0.530 Sum_probs=126.3
Q ss_pred CceEEEEecCC-ceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 30 GTNTYILGTGS-RRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 30 ~~n~~li~~~~-~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
..+++++..++ +.+|||+|..... .+.+.+.+...+.+|++|++||.|.||+||+..+.+... ..+++..+....
T Consensus 24 ~~~~~~~~~~~~~~~liD~G~~~~~--~~~~~~~l~~~~~~i~~vilTH~H~DH~gg~~~~~~~~~--~~~~~~~~~~~~ 99 (252)
T COG0491 24 GNSVYLLVDGEGGAVLIDTGLGDAD--AEALLEALAALGLDVDAILLTHGHFDHIGGAAVLKEAFG--AAPVIAPAEVPL 99 (252)
T ss_pred cccEEEEEcCCCceEEEeCCCCchH--HHHHHHHHHHcCCChheeeecCCchhhhccHHHHHhhcC--CceEEccchhhh
Confidence 35566666666 8999999997532 355666666666689999999999999999999988765 133433222111
Q ss_pred cc--------c--cccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCC--cccc
Q psy1547 109 DE--------A--QATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEG--TTVF 176 (216)
Q Consensus 109 ~~--------~--~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~--~~~~ 176 (216)
.. . ......+.......+..++.+.+++..++++++||||+|++++++++++++|+||+++... ....
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~tpGHT~g~~~~~~~~~~~l~~gD~~~~~~~~~~~~ 179 (252)
T COG0491 100 LLREEILRKAGVTAEAYAAPGASPLRALEDGDELDLGGLELEVLHTPGHTPGHIVFLLEDGGVLFTGDTLFAGDTGVGRL 179 (252)
T ss_pred hhhcccccccccccccCCCCccccceecCCCCEEEecCeEEEEEECCCCCCCeEEEEECCccEEEecceeccCCCCCccc
Confidence 00 0 1111222335566777999999999999999999999999999999888999999988764 1111
Q ss_pred ----ccHHHHHHHHHHHHcCCCC--eEEcCCCc
Q psy1547 177 ----SDLISYIESLRRIRSLKPD--IIYPAHGP 203 (216)
Q Consensus 177 ----~~~~~~~~~l~~l~~~~~~--~v~pgHg~ 203 (216)
.+..++.++++++..+..+ .++||||.
T Consensus 180 ~~~~~~~~~~~~s~~~~~~~~~~~~~v~pgHg~ 212 (252)
T COG0491 180 DLPGGDAAQLLASLRRLLLLLLPDTLVLPGHGP 212 (252)
T ss_pred cCCCCCHHHHHHHHHHHHhccCCCCEEECCCCc
Confidence 3378999999999988776 99999997
No 10
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.92 E-value=2.2e-23 Score=154.88 Aligned_cols=166 Identities=33% Similarity=0.555 Sum_probs=126.5
Q ss_pred CCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhC-CCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 29 QGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKE-SISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 29 ~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~-~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
...||++|+.+++.+|||||..... ...+.+.+. ..++++|++||.|.||++|+..+.+.. ++++++++...
T Consensus 4 ~~~~~~li~~~~~~iliD~g~~~~~----~~~~~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~---~~~i~~~~~~~ 76 (183)
T smart00849 4 VGVNSYLVEGDGGAILIDTGPGEAE----DLLAELKKLGPKDIDAIILTHGHPDHIGGLPELLEAP---GAPVYAPEGTA 76 (183)
T ss_pred cceeEEEEEeCCceEEEeCCCChhH----HHHHHHHHcCchhhcEEEecccCcchhccHHHHHhCC---CCcEEEchhhh
Confidence 3589999999999999999965322 222223332 458999999999999999999988873 36777766544
Q ss_pred cccccc-------cCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCc------c
Q psy1547 108 KDEAQA-------TDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGT------T 174 (216)
Q Consensus 108 ~~~~~~-------~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~------~ 174 (216)
...... ............++.++++.+++.++++++++||+++++++++++.+++|+||+.+.... .
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~vl~~gD~~~~~~~~~~~~~~ 156 (183)
T smart00849 77 ELLKDLLKLGGALGAEAPPPPPDRTLKDGEELDLGGLELEVIHTPGHTPGSIVLYLPEGKILFTGDLLFSGGIGRTDDDG 156 (183)
T ss_pred HHHhccchhccccCcCCCCCccceecCCCCEEEeCCceEEEEECCCCCCCcEEEEECCCCEEEECCeeeccCCCCcccCC
Confidence 322211 111122345677899999999999999999999999999999999999999998876552 2
Q ss_pred ccccHHHHHHHHHHHHcCCCCeEEcCC
Q psy1547 175 VFSDLISYIESLRRIRSLKPDIIYPAH 201 (216)
Q Consensus 175 ~~~~~~~~~~~l~~l~~~~~~~v~pgH 201 (216)
.......+.++++++.+...+.++|+|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~i~~~H 183 (183)
T smart00849 157 GDASASDSLESLLKLLALDPELVVPGH 183 (183)
T ss_pred CCccHHHHHHHHHHhhcCCccEeecCC
Confidence 225677889999999999999999998
No 11
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.91 E-value=1.4e-23 Score=168.18 Aligned_cols=193 Identities=23% Similarity=0.309 Sum_probs=142.9
Q ss_pred CccccccceEEeccCCC------CccC---CCCceEEEEecCCceEEEecCCCCChh-HHHHHHHHHhhCCCCccEEEec
Q psy1547 7 NVSQLSSRVIRVLGMNP------GPMT---LQGTNTYILGTGSRRLLLDTGEPDHME-YIENLKQVLNKESISLEHIVLS 76 (216)
Q Consensus 7 ~~~~v~~~v~~v~~~~~------~~~~---~~~~n~~li~~~~~~iliD~g~~~~~~-~~~~~~~~l~~~~~~i~~v~~T 76 (216)
+..++.+++|+++...- .... .-..|+|||. +++.+|||++...... +++.+.+.++ +++||||+++
T Consensus 3 ~~~~i~~~i~~~~~~dw~~~~f~~~~~~~~GttyNSYLI~-~~k~aLID~~~~~~~~~~l~~l~~~id--~k~iDYIi~~ 79 (388)
T COG0426 3 QVLKIADNIYWVGVRDWDRRRFEIEYETPRGTTYNSYLIV-GDKTALIDTVGEKFFDEYLENLSKYID--PKEIDYIIVN 79 (388)
T ss_pred ccccccCceEEecccchhheeeeeeeccCCCceeeeEEEe-CCcEEEECCCCcchHHHHHHHHHhhcC--hhcCeEEEEC
Confidence 56778899988854311 1010 1237999999 8889999999876433 5555555555 5579999999
Q ss_pred ccCccccCChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCC-CCCCceEEE
Q psy1547 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLK 155 (216)
Q Consensus 77 H~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-Ht~~~~~~~ 155 (216)
|..+||+|.+..+.+.+|. ++++++.........+.... ...+.++.|+++++||.+++++++|- |+|+++..|
T Consensus 80 H~ePDhsg~l~~ll~~~p~--a~ii~s~~~~~~L~~~~~~~---~~~~ivk~Gd~ldlGg~tL~Fi~ap~LHWPd~m~TY 154 (388)
T COG0426 80 HTEPDHSGSLPELLELAPN--AKIICSKLAARFLKGFYHDP---EWFKIVKTGDTLDLGGHTLKFIPAPFLHWPDTMFTY 154 (388)
T ss_pred CCCcchhhhHHHHHHhCCC--CEEEeeHHHHHHHHHhcCCc---cceeecCCCCEeccCCcEEEEEeCCCCCCCCceeEe
Confidence 9999999999999999874 78888776554443332221 11899999999999999999999996 999999999
Q ss_pred ECCCcEEEEcceecCCCcc---ccccHH-------------------HHHHHHHHHHcCCCCeEEcCCCccccC
Q psy1547 156 LEEENVVFSGDTILGEGTT---VFSDLI-------------------SYIESLRRIRSLKPDIIYPAHGPVVEV 207 (216)
Q Consensus 156 ~~~~~vl~~GD~~~~~~~~---~~~~~~-------------------~~~~~l~~l~~~~~~~v~pgHg~~~~~ 207 (216)
.+..++||++|++-...+. +-.+.. .....++++..++.++++|+||++++.
T Consensus 155 d~~~kILFS~D~fG~h~~~~~~fded~~~~~~~~~~Y~~~lm~p~~~~v~~~l~~~~~l~i~~IaP~HG~i~~~ 228 (388)
T COG0426 155 DPEDKILFSCDAFGAHVCDDYRFDEDIEELLPDMRKYYANLMAPNARLVLWALKKIKLLKIEMIAPSHGPIWRG 228 (388)
T ss_pred ecCCcEEEccccccccccchhccccCHHHHHHHHHHHHHHhhcccHHHHHHHHhhhcccCccEEEcCCCceeeC
Confidence 9999999999954322111 112222 223566677777899999999999986
No 12
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.89 E-value=5.6e-23 Score=153.26 Aligned_cols=167 Identities=26% Similarity=0.464 Sum_probs=118.7
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHH-HHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENL-KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~-~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
++|||+|+++++.+|||||...... ... .......+.+|++|++||.|+||+||+..+.++++ ...........
T Consensus 5 ~~n~~li~~~~~~iliD~G~~~~~~--~~~~~~~~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~~---~~~~~~~~~~~ 79 (194)
T PF00753_consen 5 GSNSYLIEGGDGAILIDTGLDPDFA--KELELALLGISGEDIDAVILTHAHPDHIGGLPELLEAGP---VVIIYSSADAA 79 (194)
T ss_dssp EEEEEEEEETTEEEEESEBSSHHHH--HHHHHHHHHHTGGGEEEEEESSSSHHHHTTHHHHHHHTT---EEEEEEHHHHH
T ss_pred eEEEEEEEECCEEEEEeCCCCchhh--HHhhhhHhhccCCCeEEEEECcccccccccccccccccc---eeeeecccccc
Confidence 5899999999999999999985332 222 13344456689999999999999999999999976 23322221111
Q ss_pred ccccccC--------CCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCccc-----
Q psy1547 109 DEAQATD--------FVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTV----- 175 (216)
Q Consensus 109 ~~~~~~~--------~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~~~----- 175 (216)
....... ...................++..+.+...++|++++++++.+++++||+||+++......
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlftGD~~~~~~~~~~~~~~ 159 (194)
T PF00753_consen 80 KAIRPPDRDSASRRGPAVPPPPIIDEDEDDLEIGGDRILFIIPGPGHGSDSLIIYLPGGKVLFTGDLLFSNEHPNPDPDL 159 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHESEEEEEETTTEEEEETTEEEEEEESSSSSTTEEEEEETTTTEEEEETTSCTTTSSSSSTSH
T ss_pred ccccccccccccccccccccccceeeecccccccccccccceeccccCCcceEEEeCCCcEEEeeeEeccCCcccccccc
Confidence 1000000 000112234445555566677888889999999999999999999999999877543211
Q ss_pred ---------cccHHHHHHHHHHHHcCCCCeEEcCC
Q psy1547 176 ---------FSDLISYIESLRRIRSLKPDIIYPAH 201 (216)
Q Consensus 176 ---------~~~~~~~~~~l~~l~~~~~~~v~pgH 201 (216)
..+..+++++++++.++++++++|||
T Consensus 160 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ii~gH 194 (194)
T PF00753_consen 160 PLRGADVRYGSNWEESIEALRRLEALDPEVIIPGH 194 (194)
T ss_dssp TTTTHTTSHTTHHHHHHHHHHHHHTSTTSEEEESS
T ss_pred ccccccccCcHHHHHHHHHHHHHHCCCCCEEEeCc
Confidence 14567889999999999999999999
No 13
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=99.83 E-value=1.3e-19 Score=129.50 Aligned_cols=172 Identities=22% Similarity=0.236 Sum_probs=111.1
Q ss_pred cceEEeccCCCCccCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 13 SRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 13 ~~v~~v~~~~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
+++|.+..+++... .+.||++...+++.||||+-.-+ ....+.+...+ .+++|++|| .||+..+..+++.
T Consensus 7 pdl~~Ws~fn~~~n--~dfng~~~~~p~GnilIDP~~ls-----~~~~~~l~a~g-gv~~IvLTn--~dHvR~A~~ya~~ 76 (199)
T PF14597_consen 7 PDLFSWSWFNEARN--LDFNGHAWRRPEGNILIDPPPLS-----AHDWKHLDALG-GVAWIVLTN--RDHVRAAEDYAEQ 76 (199)
T ss_dssp TTEEEEEEEETTTT--EEEEEEEE--TT--EEES----------HHHHHHHHHTT---SEEE-SS--GGG-TTHHHHHHH
T ss_pred CccchhhhcChhhc--cCceeEEEEcCCCCEEecCcccc-----HHHHHHHHhcC-CceEEEEeC--ChhHhHHHHHHHH
Confidence 67777765544222 24789999999999999997653 33455555544 599999999 7899999999999
Q ss_pred cCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCC-CCCCceEEEECCCcEEEEcceecCC
Q psy1547 93 INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGE 171 (216)
Q Consensus 93 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-Ht~~~~~~~~~~~~vl~~GD~~~~~ 171 (216)
+. ++||.+....... +......+.+|+++.- | +++++.+| ||||.+++++++ ++|++||++.+.
T Consensus 77 ~~---a~i~~p~~d~~~~--------p~~~D~~l~dge~i~~-g--~~vi~l~G~ktpGE~ALlled-~vLi~GDl~~~~ 141 (199)
T PF14597_consen 77 TG---AKIYGPAADAAQF--------PLACDRWLADGEEIVP-G--LWVIHLPGSKTPGELALLLED-RVLITGDLLRSH 141 (199)
T ss_dssp S-----EEEEEGGGCCC---------SS--SEEE-TT-BSST-T--EEEEEE-SSSSTTEEEEEETT-TEEEESSSEEBS
T ss_pred hC---CeeeccHHHHhhC--------CCCCccccccCCCccC-c--eEEEEcCCCCCCceeEEEecc-ceEEecceeeec
Confidence 87 7999887665432 2256788999986544 3 99999999 999999999965 699999987654
Q ss_pred Cc--------cccccHHHHHHHHHHHHcC-CCCeEEcCCCccccCcc
Q psy1547 172 GT--------TVFSDLISYIESLRRIRSL-KPDIIYPAHGPVVEVGL 209 (216)
Q Consensus 172 ~~--------~~~~~~~~~~~~l~~l~~~-~~~~v~pgHg~~~~~~~ 209 (216)
.. ..+.|+.++.++++++.++ +++.+++|||.++-...
T Consensus 142 ~~g~l~lLpd~k~~d~~~a~~sl~RLa~~~~fe~lLvGdGwpi~~~~ 188 (199)
T PF14597_consen 142 PAGSLSLLPDEKLYDPTEARASLRRLAAYPDFEWLLVGDGWPIFRDA 188 (199)
T ss_dssp STTS-EE--GGG-S-HHHHHHHHHHHHT-TT--EEEESBB--B-S-H
T ss_pred CCCCeEECChHHcCCHHHHHHHHHHHhccccccEEeecCCchhhhhH
Confidence 33 2237899999999999999 69999999999986443
No 14
>KOG0814|consensus
Probab=99.76 E-value=1.6e-17 Score=117.90 Aligned_cols=156 Identities=28% Similarity=0.403 Sum_probs=118.2
Q ss_pred ceEEEEec--CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 31 TNTYILGT--GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 31 ~n~~li~~--~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
+-+|++-. ++++++||+-... +.+-.+.++..+.++.|-+.||.|.||+-|..+++..+|. ++-..+.....
T Consensus 21 TytYll~d~~~~~AviIDPV~et----~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~pg--~kSVis~~SGa 94 (237)
T KOG0814|consen 21 TYTYLLGDHKTGKAVIIDPVLET----VSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLPG--CKSVISSASGA 94 (237)
T ss_pred eEEEEeeeCCCCceEEecchhhc----ccchHHHHHhcCceeeeeecceeecccccccchHHHhccc--HHHHhhhcccc
Confidence 45777654 6679999997543 2333455666678899999999999999999999999874 33333332222
Q ss_pred ccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEECCCcEEEEcceecCCCc--ccc--ccHHHHHH
Q psy1547 109 DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGT--TVF--SDLISYIE 184 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~~~~vl~~GD~~~~~~~--~~~--~~~~~~~~ 184 (216)
....-+++|+.+++|+..+++-.+||||+|.+.+...+.+..|+||+++-.++ ..+ ..+....+
T Consensus 95 ------------kAD~~l~~Gd~i~~G~~~le~ratPGHT~GC~TyV~~d~~~aFTGDalLIRgCGRTDFQqG~~~~Lye 162 (237)
T KOG0814|consen 95 ------------KADLHLEDGDIIEIGGLKLEVRATPGHTNGCVTYVEHDLRMAFTGDALLIRGCGRTDFQQGCPASLYE 162 (237)
T ss_pred ------------ccccccCCCCEEEEccEEEEEecCCCCCCceEEEEecCcceeeecceeEEeccCccchhccChHHHHH
Confidence 22667899999999999999999999999999999999999999999764332 222 44555555
Q ss_pred HH-HHHHcCCCC-eEEcCCCcc
Q psy1547 185 SL-RRIRSLKPD-IIYPAHGPV 204 (216)
Q Consensus 185 ~l-~~l~~~~~~-~v~pgHg~~ 204 (216)
++ .++-.++-| +|+|+|+.-
T Consensus 163 sVH~kIFTLP~d~~iYpaHdY~ 184 (237)
T KOG0814|consen 163 SVHSKIFTLPEDYLIYPAHDYK 184 (237)
T ss_pred HHhHHheeCCCceEEeeccccC
Confidence 55 578888888 999999653
No 15
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.75 E-value=1.6e-17 Score=138.95 Aligned_cols=142 Identities=16% Similarity=0.259 Sum_probs=101.6
Q ss_pred CCCCceEEEEecCCceEEEecCCCCChhHHHHH------HHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceE
Q psy1547 27 TLQGTNTYILGTGSRRLLLDTGEPDHMEYIENL------KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATI 100 (216)
Q Consensus 27 ~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~------~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i 100 (216)
...+.|||+++.++..+|||||..........+ ...+.....++++|++||.|.||++|++++...++ ..++
T Consensus 10 ~eiG~n~~ll~~~~~~iliD~G~~~~~~~~~g~~~~iPd~~~l~~~~~~i~~I~iTH~H~DHiggl~~l~~~~~--~~~V 87 (422)
T TIGR00649 10 GEIGKNMYVVEIDDDVFIFDAGILFPEDAMLGVDGVIPDFSYLQENQDKVKGIFITHGHEDHIGAVPYLFHTVG--FPPI 87 (422)
T ss_pred CccCCeEEEEEECCeEEEEeCCCCCCcccccCCccccCCHHHHHhccccCCEEEECCCChHHhCcHHHHHHhCC--CCeE
Confidence 345799999999999999999986422110000 12344445589999999999999999999987753 2578
Q ss_pred eccCCCCccccc-c-cCCCCCCCceeecCCCCeEEEC-CeeEEEEeCCCCCCCceEEEEC--CCcEEEEcceecC
Q psy1547 101 WKFKGTEKDEAQ-A-TDFVPENKTVQTLTDGQLLKVE-GATLRVIHTPGHTTDHIVLKLE--EENVVFSGDTILG 170 (216)
Q Consensus 101 ~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~g-~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~GD~~~~ 170 (216)
|+++........ . ............++.++.+++| +.+++++++++|.|+++++.+. +++++|+||+.+.
T Consensus 88 y~~~~t~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ig~~~~v~~~~~~H~~p~s~g~~i~~~~~~ivytGD~~~~ 162 (422)
T TIGR00649 88 YGTPLTIALIKSKIKENKLNVRTDLLEIHEGEPIETGENHTIEFIRITHSIPDSVGFALHTPLGYIVYTGDFKFD 162 (422)
T ss_pred EeCHHHHHHHHHHHHhcCCCCCCceEEeCCCCEEEeCCceEEEEEECCCCCcceEEEEEEeCCcEEEECCCcCCC
Confidence 887654332211 1 1111112346788899999997 5999999999889999999884 6789999998653
No 16
>PRK11539 ComEC family competence protein; Provisional
Probab=99.70 E-value=7.8e-16 Score=136.69 Aligned_cols=155 Identities=21% Similarity=0.279 Sum_probs=111.5
Q ss_pred CceEEEEecCCceEEEecCCCCC--hhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDH--MEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~--~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
...+.+|+++++++|||+|.... ....+.+...++..|.++|+|++||.|.||+||+..+.+.++. .+++.+....
T Consensus 510 qG~a~li~~~~~~lLiDtG~~~~~~~~~~~~i~P~L~~~Gi~lD~lilSH~d~DH~GGl~~Ll~~~~~--~~i~~~~~~~ 587 (755)
T PRK11539 510 HGLAVVIERNGKAILYDTGNAWPTGDSAQQVIIPWLRWHGLTPEGIILSHEHLDHRGGLASLLHAWPM--AWIRSPLNWA 587 (755)
T ss_pred CceEEEEEECCEEEEEeCCCCCCCCcchHHHHHHHHHHcCCCcCEEEeCCCCcccCCCHHHHHHhCCc--ceeeccCccc
Confidence 35677899999999999996421 1123566777888888899999999999999999999999874 4555533111
Q ss_pred cccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCC-----CCceEEEEC--CCcEEEEcceecCCCccccccHH
Q psy1547 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHT-----TDHIVLKLE--EENVVFSGDTILGEGTTVFSDLI 180 (216)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt-----~~~~~~~~~--~~~vl~~GD~~~~~~~~~~~~~~ 180 (216)
.......|+.+.+++.+++++++++|. .+||++.++ +.++||+||. +.+
T Consensus 588 --------------~~~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi----------~~~ 643 (755)
T PRK11539 588 --------------NHLPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDL----------EAQ 643 (755)
T ss_pred --------------CcccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCC----------ChH
Confidence 112356788999999999999877654 557888886 5679999993 223
Q ss_pred HHHHHHHHH-HcCCCC-eEEcCCCccccCccc
Q psy1547 181 SYIESLRRI-RSLKPD-IIYPAHGPVVEVGLS 210 (216)
Q Consensus 181 ~~~~~l~~l-~~~~~~-~v~pgHg~~~~~~~~ 210 (216)
...+-+++. ..++.| +.+|+||+..+..+.
T Consensus 644 ~E~~Ll~~~~~~l~~dvL~vpHHGS~tSss~~ 675 (755)
T PRK11539 644 AEQKLLSRYWQQLAATLLQVPHHGSNTSSSLP 675 (755)
T ss_pred HHHHHHhcCccCcCCCEEEeCCCCCCCCChHH
Confidence 333333332 235678 889999988876654
No 17
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.68 E-value=2.2e-15 Score=132.27 Aligned_cols=159 Identities=23% Similarity=0.340 Sum_probs=110.8
Q ss_pred CceEEEEecCCceEEEecCCCCCh--hHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~--~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
...+.+|+++++++|||+|..... ...+.+...++..|.++|+|++||.|.||+||+..+.+.++. .+++.+....
T Consensus 449 qGdaili~~~~~~iLIDtG~~~~~~~~~~~~l~p~L~~~Gi~ID~lilTH~d~DHiGGl~~ll~~~~v--~~i~~~~~~~ 526 (662)
T TIGR00361 449 QGLAMFIGANGKGILYDTGEPWREGSLGEKVIIPFLTAKGIKLEALILSHADQDHIGGAEIILKHHPV--KRLVIPKGFV 526 (662)
T ss_pred CceEEEEEECCeEEEEeCCCCCCCCCccHHHHHHHHHHcCCCcCEEEECCCchhhhCcHHHHHHhCCc--cEEEeccchh
Confidence 356888999899999999964211 123456777787787899999999999999999999999874 3455433211
Q ss_pred cccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCC-C----CCCceEEEEC--CCcEEEEcceecCCCccccccHH
Q psy1547 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-H----TTDHIVLKLE--EENVVFSGDTILGEGTTVFSDLI 180 (216)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pg-H----t~~~~~~~~~--~~~vl~~GD~~~~~~~~~~~~~~ 180 (216)
. .......+..|+.+.+++.++++++.+. . -..++++.++ +.++||+||. +.+
T Consensus 527 ~----------~~~~~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~----------~~~ 586 (662)
T TIGR00361 527 E----------EGVAIEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDL----------EAE 586 (662)
T ss_pred h----------CCCceEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCC----------CHH
Confidence 0 0123556888999999999999997532 1 2456777776 5689999995 222
Q ss_pred HHHHHHHHHHcCCCC-eEEcCCCccccCccc
Q psy1547 181 SYIESLRRIRSLKPD-IIYPAHGPVVEVGLS 210 (216)
Q Consensus 181 ~~~~~l~~l~~~~~~-~v~pgHg~~~~~~~~ 210 (216)
....-++....++.| +.+|.||+..+..+.
T Consensus 587 ~E~~l~~~~~~l~~dvLk~~HHGS~~Sss~~ 617 (662)
T TIGR00361 587 GEQEVMRVFPNIKADVLQVGHHGSKTSTSEE 617 (662)
T ss_pred HHHHHHhcccCcCccEEEeCCCCCCCCChHH
Confidence 222223333456778 888999988766543
No 18
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=99.67 E-value=2.7e-16 Score=127.52 Aligned_cols=196 Identities=14% Similarity=0.219 Sum_probs=136.5
Q ss_pred CCccccccceEEeccCCCCccCCCCceEEEEecCCceEEEecCCCCChh--HHHHHHHHHhhCCCCccEEEecccCcccc
Q psy1547 6 PNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHME--YIENLKQVLNKESISLEHIVLSHWHNDHV 83 (216)
Q Consensus 6 ~~~~~v~~~v~~v~~~~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~--~~~~~~~~l~~~~~~i~~v~~TH~H~DH~ 83 (216)
..+.||+|++|.|+|.. -+|..+|+++.++|+|||-...+.+ .++...+.++ .++|.+|+.||.|.||+
T Consensus 108 ~GLfkVtd~iYQVRG~D-------isNITfveGdtg~IViDpL~t~~tA~aAldl~~~~~g--~rPV~aVIYtHsH~DHf 178 (655)
T COG2015 108 HGLFKVTDGIYQVRGFD-------ISNITFVEGDTGWIVIDPLVTPETAKAALDLYNQHRG--QRPVVAVIYTHSHSDHF 178 (655)
T ss_pred cCeeeeccceeEeeccc-------ccceEEEcCCcceEEEcccCCcHHHHHHHHHHHHhcC--CCCeEEEEeeccccccc
Confidence 44678999999999874 3788899999999999998874322 2333333333 34899999999999999
Q ss_pred CChHHHHhhc--CCCcceEeccCCCCcc----------------cccccCCCCCC---------------------Cc-e
Q psy1547 84 GGLKDIFEHI--NPDSATIWKFKGTEKD----------------EAQATDFVPEN---------------------KT-V 123 (216)
Q Consensus 84 gg~~~~~~~~--~~~~~~i~~~~~~~~~----------------~~~~~~~~~~~---------------------~~-~ 123 (216)
||..-+.+.. ..++++|.++....+. ..+++..+++. .+ .
T Consensus 179 GGVkGiv~eadV~sGkV~iiAP~GFme~avaENvlAGnaM~RRa~YqyG~~Lp~g~~G~V~~giGk~la~G~vsLiaPT~ 258 (655)
T COG2015 179 GGVKGIVSEADVKSGKVQIIAPAGFMEEAVAENVLAGNAMSRRAQYQYGTLLPPGAQGQVGCGIGKTLATGEVSLIAPTK 258 (655)
T ss_pred CCeeeccCHHHcccCceeEecchhHHHHHHHHhhhhhhhHhhhhhhhhccccCCCccCccccccccccccCceeeecceE
Confidence 9998776542 3445788876543221 11122222211 22 3
Q ss_pred eecCCCCeEEECCeeEEEEeCCC-CCCCceEEEECCCcEEEEcceecCCCcccc-------ccHHHHHHHHHHHHc---C
Q psy1547 124 QTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGDTILGEGTTVF-------SDLISYIESLRRIRS---L 192 (216)
Q Consensus 124 ~~~~~~~~~~~g~~~i~~~~~pg-Ht~~~~~~~~~~~~vl~~GD~~~~~~~~~~-------~~~~~~~~~l~~l~~---~ 192 (216)
.+-+.|+++.++|+++++..+|| .+|..+-+|+|.-++|.+..-....-+..+ .|..+|..-|+.-+. -
T Consensus 259 ~I~~~gE~~~iDGV~~~Fq~tPgtEaPAEM~~y~P~~kaL~mAEnat~~lHNlytlRGa~vRD~~~Ws~ylneal~~fg~ 338 (655)
T COG2015 259 IIEETGETLTIDGVEFEFQMTPGTEAPAEMHFYFPRLKALCMAENATHTLHNLYTLRGAEVRDAKAWSKYLNEALDMFGD 338 (655)
T ss_pred EeeccCceEEEeceEEEEeeCCCCCCcHHHhhhhhHHHHHHHHhhccccceeeeecccceecchHHHHHHHHHHHHHhcc
Confidence 34567899999999999999999 899999999998888877664443333332 566777665554333 4
Q ss_pred CCCeEEcCCCccccCccc
Q psy1547 193 KPDIIYPAHGPVVEVGLS 210 (216)
Q Consensus 193 ~~~~v~pgHg~~~~~~~~ 210 (216)
+.|+++..|.+|..+.+.
T Consensus 339 ~adVmfa~H~WP~wG~~~ 356 (655)
T COG2015 339 DADVMFASHTWPRWGNAH 356 (655)
T ss_pred cccEEEeecCCCccchHH
Confidence 678999999998876554
No 19
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.62 E-value=1.4e-14 Score=113.92 Aligned_cols=164 Identities=19% Similarity=0.319 Sum_probs=117.5
Q ss_pred ceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCC-CccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESI-SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 31 ~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~-~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
.-+++++.+++.+++|+|..... ..+...|+..|. +||.+++||.|.||+||+..+.+.++...+-++........
T Consensus 54 g~a~li~~~~~~~l~dtg~~~~~---~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v~~~~i~~~~~~~~~ 130 (293)
T COG2333 54 GLATLIRSEGKTILYDTGNSMGQ---DVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKVPELWIYAGSDSTST 130 (293)
T ss_pred CeEEEEeeCCceEEeecCcccCc---eeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCCCcEEEeCCCCccch
Confidence 45788999999999999984222 556777777787 59999999999999999999999765433444443332211
Q ss_pred cccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCC-----CCceEEEEC--CCcEEEEcceecCCCccccccHHHH
Q psy1547 110 EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHT-----TDHIVLKLE--EENVVFSGDTILGEGTTVFSDLISY 182 (216)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt-----~~~~~~~~~--~~~vl~~GD~~~~~~~~~~~~~~~~ 182 (216)
.. .-...........|+.+.+++..++++...+.. ..||++++. +.++||+||+ ....+
T Consensus 131 ~~----~~~~~~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~---------e~~~E- 196 (293)
T COG2333 131 FV----LRDAGIPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDL---------EEKGE- 196 (293)
T ss_pred hh----hhhcCCceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCC---------CchhH-
Confidence 11 111125677888999999999999999876443 347888887 6789999995 22233
Q ss_pred HHHHHHHHcCCCC-eEEcCCCccccCcccc
Q psy1547 183 IESLRRIRSLKPD-IIYPAHGPVVEVGLSF 211 (216)
Q Consensus 183 ~~~l~~l~~~~~~-~v~pgHg~~~~~~~~~ 211 (216)
..-++.-.++.+| +.++.||.-.++...|
T Consensus 197 ~~l~~~~~~l~~dVLkV~HHGS~tSss~~F 226 (293)
T COG2333 197 KLLKKYGPDLRADVLKVGHHGSKTSSSLAF 226 (293)
T ss_pred HHHHhhCCCccceEEEeccCCccccCcHHH
Confidence 4444555567788 7788889988877665
No 20
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.62 E-value=6.8e-14 Score=106.21 Aligned_cols=173 Identities=21% Similarity=0.288 Sum_probs=101.2
Q ss_pred ceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCccc
Q psy1547 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDE 110 (216)
Q Consensus 31 ~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~ 110 (216)
.=|+||+.+.+.+|+|||..+ ..+-...+.++....++|+||+||.|+||+||+.++.+.-.. .+++++++......
T Consensus 22 GfS~LVE~~~~riLFDtG~~~--~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~~~-~i~v~ahp~af~~~ 98 (259)
T COG1237 22 GFSALVEDEGTRILFDTGTDS--DVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEENNP-GIPVYAHPDAFKAK 98 (259)
T ss_pred ceEEEEEcCCeEEEEeCCCCc--HHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhccCC-CceEEeChHHHhhh
Confidence 448899999999999999764 233444556665556899999999999999999999776421 27889887554311
Q ss_pred cc-ccC-CCC---CCCceeecCCCCeEE-----ECCee-E-----EEEeCCCC---CCCceEEEECC--CcEEEEccee-
Q psy1547 111 AQ-ATD-FVP---ENKTVQTLTDGQLLK-----VEGAT-L-----RVIHTPGH---TTDHIVLKLEE--ENVVFSGDTI- 168 (216)
Q Consensus 111 ~~-~~~-~~~---~~~~~~~~~~~~~~~-----~g~~~-i-----~~~~~pgH---t~~~~~~~~~~--~~vl~~GD~~- 168 (216)
.. +.. ... ........++.+.+. .|... + .++ ..|- -.+..++.+.. +-++.+|..=
T Consensus 99 ~~~~~~~gi~e~~~~~~~~~~~~~~~I~~g~~~~Gei~~~~~e~~~~~-~dg~~D~~~de~aLi~~~~~GlvvItGCsH~ 177 (259)
T COG1237 99 IEVFREIGIPELEELARLILSEEPDEIVEGVITLGEIPKVTFEKGGYF-EDGEPDPVLDEQALIVETEKGLVVITGCSHP 177 (259)
T ss_pred ccccccccchhhhhccceeecCCCceeecCeEEecccCcccccccccc-ccCCCCCcCCceEEEEecCCceEEEEcCCcc
Confidence 10 000 000 001111112222211 11111 0 000 1121 12456666652 3488888841
Q ss_pred --------------------cCCCccccccHHHHHHHHHHHHcCCCCeEEcCCCccccC
Q psy1547 169 --------------------LGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVVEV 207 (216)
Q Consensus 169 --------------------~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~pgHg~~~~~ 207 (216)
.++.+..-....+..++++.++++.++.++|+|..-...
T Consensus 178 GI~niv~~~~~~~g~rv~~ViGGFHL~~~~~~~l~~~~~~l~el~v~~i~pcHCTg~~a 236 (259)
T COG1237 178 GIVNIVEWAKERSGDRVKAVIGGFHLIGASEERLEEVADYLKELGVEKIYPCHCTGEKA 236 (259)
T ss_pred cHHHHHHHHHHhccceeEEEeeeeccCCCcHHHHHHHHHHHHhcCCCeEEecCCCCHHH
Confidence 111112224456777899999999999999999865543
No 21
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.60 E-value=4e-15 Score=114.70 Aligned_cols=161 Identities=18% Similarity=0.319 Sum_probs=102.8
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
+.+|++|+.++..+||||+....... .+.....++|+|++||.|.||+++...+..+. .++++.+......
T Consensus 7 G~s~~li~~~~~~iLiDP~~~~~~~~------~~~~~~~~id~vliTH~H~DH~~~~~~~~~~~---~~~v~~~~~~~~~ 77 (228)
T PRK00685 7 GHSAFLIETGGKKILIDPFITGNPLA------DLKPEDVKVDYILLTHGHGDHLGDTVEIAKRT---GATVIANAELANY 77 (228)
T ss_pred cceEEEEEECCEEEEECCCCCCCCCC------CCChhcCcccEEEeCCCCccccccHHHHHHhC---CCEEEEeHHHHHH
Confidence 57899999999999999865321111 01111227999999999999999988765532 3677766533222
Q ss_pred cccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCC------------ceEEEEC--CCcEEEEcceecCCCccc
Q psy1547 110 EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTD------------HIVLKLE--EENVVFSGDTILGEGTTV 175 (216)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~------------~~~~~~~--~~~vl~~GD~~~~~~~~~ 175 (216)
.... ...+...++.++.+.+++.+++++++. |+.. ..+|.++ +.+++|+||+.+......
T Consensus 78 ~~~~-----~~~~~~~~~~~~~~~~~~~~i~~~p~~-H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~~~~~~ 151 (228)
T PRK00685 78 LSEK-----GVEKTHPMNIGGTVEFDGGKVKLTPAL-HSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLFSDMKL 151 (228)
T ss_pred HHhc-----CCCceeeccCCCcEEECCEEEEEEEEE-cCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccchhHHHH
Confidence 1111 112567788899999999988887653 3322 3666664 678999999854321100
Q ss_pred c-------------c-c-HHHHHHHHHHHHcCCCCeEEcCCCccc
Q psy1547 176 F-------------S-D-LISYIESLRRIRSLKPDIIYPAHGPVV 205 (216)
Q Consensus 176 ~-------------~-~-~~~~~~~l~~l~~~~~~~v~pgHg~~~ 205 (216)
+ . . -....++++....++++.++|.|-..+
T Consensus 152 ~~~~~~~D~~~~~~~~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~ 196 (228)
T PRK00685 152 IGELHKPDVALLPIGDNFTMGPEDAALAVELIKPKIVIPMHYNTF 196 (228)
T ss_pred HHHhhCCCEEEEecCCccccCHHHHHHHHHhhCCCEEEEeccCCC
Confidence 0 0 0 011234555666778999999997543
No 22
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.58 E-value=3.3e-14 Score=111.07 Aligned_cols=129 Identities=22% Similarity=0.290 Sum_probs=88.9
Q ss_pred CCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 28 LQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 28 ~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
.+...+++|+.++..+|||+|... +.+.+. ..++++|++||.|.||++|+..+..... ..+.++.+....
T Consensus 34 ~r~~~s~li~~~~~~iLiD~G~~~-------~~~~~~--~~~i~~i~iTH~H~DHi~gl~~l~~~~~-~~i~i~~~~~~~ 103 (250)
T PRK11244 34 RRRPCSALIEFNGARTLIDAGLPD-------LAERFP--PGSLQQILLTHYHMDHVQGLFPLRWGVG-DPIPVYGPPDPE 103 (250)
T ss_pred CcceeEEEEEECCCEEEEECCChH-------HhhcCC--cccCCEEEEccCchhhhccHHHHHhhcC-CceeEEeCCchh
Confidence 445778999988889999999531 122222 4579999999999999999977743211 237788866432
Q ss_pred cccccccCCCCCCCce-eecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC--CCcEEEEcceec
Q psy1547 108 KDEAQATDFVPENKTV-QTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE--EENVVFSGDTIL 169 (216)
Q Consensus 108 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~GD~~~ 169 (216)
....... .+..... ..++.++.+.+++.+++.++++ |+.++++|.++ +.+++|+||+..
T Consensus 104 ~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~I~~~~~~-H~~~s~g~~i~~~~~~i~ysgDt~~ 165 (250)
T PRK11244 104 GCDDLFK--HPGILDFSHPLEPFEPFDLGGLQVTPLPLN-HSKLTFGYLLETAHSRVAYLTDTVG 165 (250)
T ss_pred hHHHHhc--CccccccccccCCCCCeeECCEEEEEEeeC-CCcceeEEEEecCCeEEEEEcCCCC
Confidence 1111111 1111122 3477889999999899888865 88889999886 457999999853
No 23
>PRK02113 putative hydrolase; Provisional
Probab=99.58 E-value=3.4e-14 Score=111.16 Aligned_cols=165 Identities=16% Similarity=0.226 Sum_probs=106.0
Q ss_pred CCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 28 LQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 28 ~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
.+..++++|+.++..+|||+|.+. ..++.+. ...++++|++||.|+||++|+..+........+++|.++...
T Consensus 32 ~R~~~s~li~~~~~~iLiD~G~g~----~~~l~~~---~~~~id~I~lTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~ 104 (252)
T PRK02113 32 NRLRTSALVETEGARILIDCGPDF----REQMLRL---PFGKIDAVLITHEHYDHVGGLDDLRPFCRFGEVPIYAEQYVA 104 (252)
T ss_pred cceeeEEEEEECCeEEEEECCchH----HHHHHhc---CccccCEEEECCCChhhhCCHHHHHHhccCCCceEEECHHHH
Confidence 455779999999999999999762 1222221 234799999999999999999877543322347888765432
Q ss_pred cccccc-----c-CCCC--CCCceeecCCCCeEEECCeeEEEEeCCCCC-CCceEEEECCCcEEEEcceecCCC------
Q psy1547 108 KDEAQA-----T-DFVP--ENKTVQTLTDGQLLKVEGATLRVIHTPGHT-TDHIVLKLEEENVVFSGDTILGEG------ 172 (216)
Q Consensus 108 ~~~~~~-----~-~~~~--~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt-~~~~~~~~~~~~vl~~GD~~~~~~------ 172 (216)
...... . ...+ .......++.++.+.+++.+++++++. |+ ...+++.+ ++++|+||+-....
T Consensus 105 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~i~~~~~~-H~~~~~~gy~i--~~i~y~~Dt~~~~~~~~~~~ 181 (252)
T PRK02113 105 ERLRSRMPYCFVEHSYPGVPNIPLREIEPDRPFLVNHTEVTPLRVM-HGKLPILGYRI--GKMAYITDMLTMPEEEYEQL 181 (252)
T ss_pred HHHHhhCCeeeccCCCCCCcceeeEEcCCCCCEEECCeEEEEEEec-CCCccEEEEEe--CCEEEccCCCCCCHHHHHHh
Confidence 221111 0 0111 124567888899999999999998876 64 45678888 78999999743211
Q ss_pred --c-ccccc---------HHHHHHHHHHHHcCCCCeEEcCCC
Q psy1547 173 --T-TVFSD---------LISYIESLRRIRSLKPDIIYPAHG 202 (216)
Q Consensus 173 --~-~~~~~---------~~~~~~~l~~l~~~~~~~v~pgHg 202 (216)
. ..+-+ -..+.++++.+.+.+++.++..|=
T Consensus 182 ~~~DlLi~e~~~~~~~~~H~t~~~a~~~~~~~~~k~l~l~H~ 223 (252)
T PRK02113 182 QGIDVLVMNALRIAPHPTHQSLEEALENIKRIGAKETYLIHM 223 (252)
T ss_pred cCCCEEEEhhhcCCCCCCcCCHHHHHHHHHHhCCCEEEEEcc
Confidence 0 00000 012345566666677887777773
No 24
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.56 E-value=6.1e-14 Score=108.82 Aligned_cols=127 Identities=21% Similarity=0.272 Sum_probs=87.2
Q ss_pred CCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 29 QGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 29 ~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
+...|++|+.++..+|||+|... +.+.+. ..++++|++||.|.||++|+..+..... ..+.+|.++....
T Consensus 25 r~~~s~~i~~~~~~iliD~G~~~-------~~~~~~--~~~id~i~iTH~H~DHi~gl~~l~~~~~-~~~~v~~~~~~~~ 94 (238)
T TIGR03307 25 RQPCSAVIEFNGARTLIDAGLTD-------LAERFP--PGSLQAILLTHYHMDHVQGLFPLRWGVG-EPIPVYGPPDEEG 94 (238)
T ss_pred CcceEEEEEECCcEEEEECCChh-------HhhccC--ccCCCEEEEecCchhhhcchHHHHHhcC-CceeEEeCchHhh
Confidence 45678889888899999999542 122222 3479999999999999999976654322 3478888764321
Q ss_pred ccccccCCCCCCCce-eecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC--CCcEEEEccee
Q psy1547 109 DEAQATDFVPENKTV-QTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE--EENVVFSGDTI 168 (216)
Q Consensus 109 ~~~~~~~~~~~~~~~-~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~GD~~ 168 (216)
...... ....... ..+..++.+.+++.+|+.+++. |+.+++++.++ +++++|+||+.
T Consensus 95 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~g~~i~~~~~~i~y~gDt~ 154 (238)
T TIGR03307 95 CDDLFK--HPGILDFSKPLEAFEPFDLGGLRVTPLPLV-HSKLTFGYLLETDGQRVAYLTDTA 154 (238)
T ss_pred HHHHhc--CcccccccccccCCceEEECCEEEEEEecC-CCCcceEEEEecCCcEEEEEecCC
Confidence 111111 0111112 2377888999999888888865 88888888886 56899999974
No 25
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.53 E-value=1.3e-13 Score=110.45 Aligned_cols=126 Identities=15% Similarity=0.307 Sum_probs=82.9
Q ss_pred cCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcC--C--CcceEe
Q psy1547 26 MTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN--P--DSATIW 101 (216)
Q Consensus 26 ~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~--~--~~~~i~ 101 (216)
...+..+|++|+.++..+|||||.+. ..++.+. +....++++||+||.|+||++|+..+..... . ..+.+|
T Consensus 13 ~~~r~~~~~~v~~~~~~iLiD~G~g~----~~~l~~~-~~~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy 87 (299)
T TIGR02651 13 TKERNLPSIALKLNGELWLFDCGEGT----QRQMLRS-GISPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIY 87 (299)
T ss_pred CCCCCCceEEEEECCeEEEEECCHHH----HHHHHHc-CCCHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEE
Confidence 34467889999999999999999762 2222221 1112269999999999999999998865421 1 137788
Q ss_pred ccCCCCcccccc----cCCCCCCCceeecCCCC-eEEECCeeEEEEeCCCCCCCceEEEEC
Q psy1547 102 KFKGTEKDEAQA----TDFVPENKTVQTLTDGQ-LLKVEGATLRVIHTPGHTTDHIVLKLE 157 (216)
Q Consensus 102 ~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~-~~~~g~~~i~~~~~pgHt~~~~~~~~~ 157 (216)
.++......... ............++.++ .+..++.+++.+++. |+..+++|.+.
T Consensus 88 ~p~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 147 (299)
T TIGR02651 88 GPPGIKEFIETSLRVSYTYLNYPIKIHEIEEGGLVFEDDGFKVEAFPLD-HSIPSLGYRFE 147 (299)
T ss_pred CCccHHHHHHHHHHHcccCCCceEEEEEccCCCceEecCCEEEEEEEcC-CCCceEEEEEE
Confidence 876543321110 01111123456677777 588899899988877 77778888764
No 26
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.52 E-value=3e-13 Score=108.58 Aligned_cols=129 Identities=19% Similarity=0.239 Sum_probs=83.5
Q ss_pred CCccCCCCceEEEEecC----CceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc--C--
Q psy1547 23 PGPMTLQGTNTYILGTG----SRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI--N-- 94 (216)
Q Consensus 23 ~~~~~~~~~n~~li~~~----~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~--~-- 94 (216)
..+...++++|++++.+ +..+|||||.+.. ..+.+. .....+|++||+||.|+||++|+..+.... .
T Consensus 9 ~~p~~~r~~s~~lv~~~~~~~~~~iLiD~G~g~~----~~l~~~-~i~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~ 83 (303)
T TIGR02649 9 GVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQ----HQLLHT-AFNPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGI 83 (303)
T ss_pred CCCCCCCCccEEEEEccCCCCCCEEEEECCccHH----HHHHHh-CCCHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCC
Confidence 34445677999999853 3689999998741 222221 111237999999999999999999875431 1
Q ss_pred CCcceEeccCCCCccccc----ccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC
Q psy1547 95 PDSATIWKFKGTEKDEAQ----ATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE 157 (216)
Q Consensus 95 ~~~~~i~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~ 157 (216)
...+.||.++........ .............++.+..+..++.+++.+++. |+..+++|.+.
T Consensus 84 ~~~l~Iygp~~~~~~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~v~~~~~~-H~~~~~gy~i~ 149 (303)
T TIGR02649 84 IQPLTIYGPQGIREFVETALRISGSWTDYPLEIVEIGAGEILDDGLRKVTAYPLE-HPLECYGYRIE 149 (303)
T ss_pred CCCeEEEechhHHHHHHHHHHhcccccCCceEEEEcCCCceEecCCeEEEEEEcc-CccceEEEEEe
Confidence 123788887754332211 011111123456677788888888888888766 77788888874
No 27
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.51 E-value=1.6e-14 Score=125.17 Aligned_cols=140 Identities=21% Similarity=0.246 Sum_probs=90.6
Q ss_pred CCCCceEEEEecCCceEEEecCCCCChhHHHHH--HHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccC
Q psy1547 27 TLQGTNTYILGTGSRRLLLDTGEPDHMEYIENL--KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFK 104 (216)
Q Consensus 27 ~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~--~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~ 104 (216)
...+.||++++.++..+|||||........+.. .........+|++||+||.|.||+|+++++.+... ..+||++.
T Consensus 184 ~eVG~Sc~Ll~~~~~~ILIDcG~~~~~~~~~~~p~l~~~~~~~~~IDaVlITHaH~DHiG~LP~L~k~g~--~gpIY~T~ 261 (630)
T TIGR03675 184 REVGRSALLLSTPESRILLDCGVNVGANGDNAYPYLDVPEFQLDELDAVVITHAHLDHSGLVPLLFKYGY--DGPVYCTP 261 (630)
T ss_pred CccCCCEEEEEECCCEEEEECCCCccccchhhcccccccCCCHHHCcEEEECCCCHHHHhhHHHHHHhCC--CCceeecH
Confidence 344678999999999999999986431100100 01111112369999999999999999999976422 15677765
Q ss_pred CCCccccc-----------ccCC--CCC------CCceeecCCCCeEEE-CCeeEEEEeCCCCCCCceEEEEC--C--Cc
Q psy1547 105 GTEKDEAQ-----------ATDF--VPE------NKTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLE--E--EN 160 (216)
Q Consensus 105 ~~~~~~~~-----------~~~~--~~~------~~~~~~~~~~~~~~~-g~~~i~~~~~pgHt~~~~~~~~~--~--~~ 160 (216)
.+...... .+.. +.. ......++.++++.+ ++.++++++ .||++|++++.+. + .+
T Consensus 262 pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~l~yg~~~~i~~~i~vt~~~-AGHilGsa~~~~~i~dg~~~ 340 (630)
T TIGR03675 262 PTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTITLDYGEVTDIAPDIKLTFYN-AGHILGSAIAHLHIGDGLYN 340 (630)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEEeCCCCeEEecCCEEEEEec-CccccCceEEEEEECCCCEE
Confidence 43221100 0000 000 023567788888888 478888887 6899999887653 3 47
Q ss_pred EEEEcceec
Q psy1547 161 VVFSGDTIL 169 (216)
Q Consensus 161 vl~~GD~~~ 169 (216)
++|+||+-.
T Consensus 341 IvYTGD~~~ 349 (630)
T TIGR03675 341 IVYTGDFKY 349 (630)
T ss_pred EEEeCCCCC
Confidence 999999643
No 28
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.49 E-value=2.6e-13 Score=115.04 Aligned_cols=145 Identities=19% Similarity=0.299 Sum_probs=106.8
Q ss_pred CccCCCCceEEEEecCCceEEEecCCCCChhH---HHHH---HHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCc
Q psy1547 24 GPMTLQGTNTYILGTGSRRLLLDTGEPDHMEY---IENL---KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDS 97 (216)
Q Consensus 24 ~~~~~~~~n~~li~~~~~~iliD~g~~~~~~~---~~~~---~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~ 97 (216)
+.....+.||++++.++..+++|+|.....+. ++.+ ..++.....++++||+||.|.||+|+++++......
T Consensus 15 GG~~EiGkN~~vve~~~~i~i~D~G~~fp~~~~~gvDliIPd~~yl~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~~-- 92 (555)
T COG0595 15 GGVGEIGKNMYVVEYGDDIIILDAGLKFPEDDLLGVDLIIPDFSYLEENKDKVKGIFLTHGHEDHIGALPYLLKQVLF-- 92 (555)
T ss_pred cChhhhccceEEEEECCcEEEEECccccCccccccccEEecChHHhhhccccceEEEecCCchhhccchHHHHhcCCc--
Confidence 33445679999999999999999997653221 1111 233454445899999999999999999999887542
Q ss_pred ceEeccCCCCccccccc--CC-CCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC--CCcEEEEcceecC
Q psy1547 98 ATIWKFKGTEKDEAQAT--DF-VPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE--EENVVFSGDTILG 170 (216)
Q Consensus 98 ~~i~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~GD~~~~ 170 (216)
+++|+++.+.......- .. .........++.+..+.+++..++++++-+--|+++++.+. .+.|++|||+-+.
T Consensus 93 ~piy~s~lt~~Li~~k~~~~~~~~~~~~~~ev~~~~~i~~~~~~v~f~~vtHSIPds~g~~i~Tp~G~Iv~TGDFk~d 170 (555)
T COG0595 93 APIYASPLTAALIKEKLKEHGLFKNENELHEVKPGSEIKFGSFEVEFFPVTHSIPDSLGIVIKTPEGNIVYTGDFKFD 170 (555)
T ss_pred CceecCHhhHHHHHHHHHHhccccccCceEEeCCCCeEEeCcEEEEEEeecccCccceEEEEECCCccEEEeCCEEec
Confidence 78888776544322211 11 22225789999999999999999999988666999988885 5679999997654
No 29
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.44 E-value=1.2e-12 Score=104.67 Aligned_cols=134 Identities=13% Similarity=0.220 Sum_probs=87.6
Q ss_pred CCCCceEEEEecCCc-eEEEecCCCCChhHHHHHHHH--Hhh----CCCCccEEEecccCccccCChHHHHhhcCCCcce
Q psy1547 27 TLQGTNTYILGTGSR-RLLLDTGEPDHMEYIENLKQV--LNK----ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT 99 (216)
Q Consensus 27 ~~~~~n~~li~~~~~-~iliD~g~~~~~~~~~~~~~~--l~~----~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~ 99 (216)
..+...|++|+.++. .+|||+|.+. ..++.+. +.. .-.+|++||+||.|+||+.|+..+... ..++
T Consensus 35 ~~R~~ss~li~~~g~~~iLiD~G~g~----~~ql~~~~~~~~~~g~~~~~ldav~lTH~H~DHi~Gl~~l~~~---~~l~ 107 (302)
T PRK05184 35 KPRTQSSIAVSADGEDWVLLNASPDI----RQQIQATPALQPARGLRDTPIAAVVLTDGQIDHTTGLLTLREG---QPFP 107 (302)
T ss_pred CcccccEEEEEcCCCEEEEEECChhH----HHHHHhchhcCccccCCcccccEEEEeCCchhhhhChHhhccC---CCeE
Confidence 345677899986554 6999999763 2333332 100 112699999999999999999988543 3488
Q ss_pred EeccCCCCcccccccCCCC-----CCCceeecCCCCeEEEC---CeeEEEEeCCC------------CCCCceEEEEC--
Q psy1547 100 IWKFKGTEKDEAQATDFVP-----ENKTVQTLTDGQLLKVE---GATLRVIHTPG------------HTTDHIVLKLE-- 157 (216)
Q Consensus 100 i~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~g---~~~i~~~~~pg------------Ht~~~~~~~~~-- 157 (216)
||.++...+......+... .......++.++.+.++ +.+|+.++++. |...++.|.++
T Consensus 108 Vyg~~~~~~~l~~~~~~f~~~~~~~~~~~~~i~~~~~~~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~ 187 (302)
T PRK05184 108 VYATPAVLEDLSTGFPIFNVLDHYGGVQRRPIALDGPFAVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDR 187 (302)
T ss_pred EEeCHHHHHHHHhcCCcccccccccceeeEEecCCCceEecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEec
Confidence 9987654432211100000 12345677778888886 78899988751 44568999882
Q ss_pred --CCcEEEEcce
Q psy1547 158 --EENVVFSGDT 167 (216)
Q Consensus 158 --~~~vl~~GD~ 167 (216)
+++++|++|.
T Consensus 188 ~~g~~~~y~tD~ 199 (302)
T PRK05184 188 ATGKRLFYAPGL 199 (302)
T ss_pred CCCcEEEEECCC
Confidence 3469998675
No 30
>PRK04286 hypothetical protein; Provisional
Probab=99.42 E-value=1e-12 Score=104.95 Aligned_cols=136 Identities=21% Similarity=0.279 Sum_probs=80.6
Q ss_pred CceEEEEecCCceEEEecCCCCC---------h---hHHHHHHHHHhhCCCCccEEEecccCccccCChHHHH-----hh
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDH---------M---EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIF-----EH 92 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~---------~---~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~-----~~ 92 (216)
.+||++|+.++..+|||+|.... + ..+......+.....++++|++||.|+||+++...+. ++
T Consensus 14 ~~~~~~I~~~~~~iLID~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~id~IliTH~H~DHi~g~~~~~y~~~~~~ 93 (298)
T PRK04286 14 RSMATFVETKDVRILIDPGVSLAPRRYGLPPHPIELERLEEVREKILEYAKKADVITISHYHYDHHTPFYEDPYELSDEE 93 (298)
T ss_pred eeeEEEEEECCeEEEEcCCCCcCccccCCCCcchhHHHHHHHHHHhhcccccCCEEEecCCccccCCCcccccccccccc
Confidence 46999999999999999995521 1 1122333344444457999999999999998876651 11
Q ss_pred cCCCcceEeccCCCCccc----cc----c-cCCC----CCCCceeecCCCCeEEECCeeEEEEeCCCCCCC--ceEE---
Q psy1547 93 INPDSATIWKFKGTEKDE----AQ----A-TDFV----PENKTVQTLTDGQLLKVEGATLRVIHTPGHTTD--HIVL--- 154 (216)
Q Consensus 93 ~~~~~~~i~~~~~~~~~~----~~----~-~~~~----~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~--~~~~--- 154 (216)
++ ++++......... .. . .... ........+..++.+.+|+.++++.....|... .+.+
T Consensus 94 ~~---i~iy~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~ 170 (298)
T PRK04286 94 IP---KEIYKGKIVLIKDPTENINWSQRRRAPRFLKAVKDIAKKIEYADGKTFRFGGTTIEFSPPVPHGADGSKLGYVIM 170 (298)
T ss_pred ch---HHHhcCceecccCHHHHcCHHHHhhHHhHHHHHHhcCCceEECCCCEEEECCEEEEEeccCCCCCCCCccceEEE
Confidence 11 3333332221100 00 0 0000 001123556788899999999987754347533 3333
Q ss_pred -EEC--CCcEEEEccee
Q psy1547 155 -KLE--EENVVFSGDTI 168 (216)
Q Consensus 155 -~~~--~~~vl~~GD~~ 168 (216)
.++ +.+++|+||+.
T Consensus 171 ~ri~~gg~~~~~~gDt~ 187 (298)
T PRK04286 171 VRISDGDESFVFASDVQ 187 (298)
T ss_pred EEEEeCCEEEEEECCCC
Confidence 333 56899999985
No 31
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.41 E-value=2.3e-12 Score=102.84 Aligned_cols=132 Identities=17% Similarity=0.253 Sum_probs=85.8
Q ss_pred CCceEEEEec-CCceEEEecCCCCChhHHHHHHHHHhh-------CCCCccEEEecccCccccCChHHHHhhcCCCcceE
Q psy1547 29 QGTNTYILGT-GSRRLLLDTGEPDHMEYIENLKQVLNK-------ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATI 100 (216)
Q Consensus 29 ~~~n~~li~~-~~~~iliD~g~~~~~~~~~~~~~~l~~-------~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i 100 (216)
+...+++|+. ++..+|||+|.+. .+++++ +.+ ...+|++||+||.|.||+.|+..+.... .++|
T Consensus 36 R~rss~ll~~~g~~~iLID~Gpd~----r~ql~~-~~~~~~~~gl~~~~IdaI~lTH~H~DHi~GL~~L~~~~---~lpV 107 (302)
T TIGR02108 36 RTQSSIAVSADGERWVLLNASPDI----RQQIQA-TPALHPQRGLRHTPIAGVVLTDGEIDHTTGLLTLREGQ---PFTL 107 (302)
T ss_pred ccccEEEEEeCCCEEEEEECCHHH----HHHHHh-CcccccccCCCcccCCEEEEeCCCcchhhCHHHHcCCC---CceE
Confidence 4466888855 5568999999752 222222 221 1347999999999999999999997553 3899
Q ss_pred eccCCCCcccccc---cCCCCCCCceeecCCCCeEEEC-----CeeEEEEeCCC-------C------CCCceEEEECC-
Q psy1547 101 WKFKGTEKDEAQA---TDFVPENKTVQTLTDGQLLKVE-----GATLRVIHTPG-------H------TTDHIVLKLEE- 158 (216)
Q Consensus 101 ~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g-----~~~i~~~~~pg-------H------t~~~~~~~~~~- 158 (216)
|+++........+ ............++.++.+.++ +.+|+.+++++ | ....+.|.+..
T Consensus 108 ya~~~t~~~L~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~ 187 (302)
T TIGR02108 108 YATEMVLQDLSDNPIFNVLDHWNVRRQPIALNEKFEFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDG 187 (302)
T ss_pred EECHHHHHHHHhCCCccccchhhccceEecCCCcEEecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeC
Confidence 9988765543221 1000011223556777777664 47888888871 3 23578888853
Q ss_pred ---CcEEEEccee
Q psy1547 159 ---ENVVFSGDTI 168 (216)
Q Consensus 159 ---~~vl~~GD~~ 168 (216)
.+++|++|+-
T Consensus 188 ~~g~~~~y~tD~g 200 (302)
T TIGR02108 188 TTGKRLFYIPGCA 200 (302)
T ss_pred CCCcEEEEECCCC
Confidence 4699999973
No 32
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.39 E-value=7.9e-13 Score=110.26 Aligned_cols=133 Identities=22% Similarity=0.327 Sum_probs=92.6
Q ss_pred CCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCc
Q psy1547 29 QGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEK 108 (216)
Q Consensus 29 ~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~ 108 (216)
.+..|.+++.++..+++|||....... + ........+ ++|++++||.|.||+|+++++...... .++++...+..
T Consensus 12 vg~s~~~l~~~~~~il~D~G~~~~~~~-~-~~p~~~~~~-~vDavllTHaHlDH~g~lp~l~~~~~~--~~v~aT~~T~~ 86 (427)
T COG1236 12 VGRSCVLLETGGTRILLDCGLFPGDPS-P-ERPLLPPFP-KVDAVLLTHAHLDHIGALPYLVRNGFE--GPVYATPPTAA 86 (427)
T ss_pred cCcEEEEEEECCceEEEECCCCcCcCC-c-cCCCCCCCC-CcCEEEeccCchhhhcccHHHHHhccC--CceeeccCHHH
Confidence 357899999999999999998754311 0 011111111 589999999999999999999885321 46666554433
Q ss_pred ccccc-------c--CCCCC---------CCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC--CCcEEEEcce
Q psy1547 109 DEAQA-------T--DFVPE---------NKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE--EENVVFSGDT 167 (216)
Q Consensus 109 ~~~~~-------~--~~~~~---------~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~GD~ 167 (216)
..... . +..+. ....+.++-++.+.+++.++++++ .||.+|+.++.++ +++++|+||.
T Consensus 87 l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~yg~~~~v~~~~v~~~~-AGHilGsa~~~le~~~~~ilytGD~ 164 (427)
T COG1236 87 LLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPYGEPVEVGGVKVTFYN-AGHILGSAAILLEVDGGRILYTGDV 164 (427)
T ss_pred HHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecCCCceEeeeEEEEEec-CCCccceeEEEEEeCCceEEEEecc
Confidence 22110 0 00000 134556899999999998998888 7899999999997 6779999995
No 33
>PRK02126 ribonuclease Z; Provisional
Probab=99.33 E-value=1.7e-11 Score=99.21 Aligned_cols=118 Identities=24% Similarity=0.336 Sum_probs=73.9
Q ss_pred CceEEEEec--CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCC--CcceEeccCC
Q psy1547 30 GTNTYILGT--GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINP--DSATIWKFKG 105 (216)
Q Consensus 30 ~~n~~li~~--~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~--~~~~i~~~~~ 105 (216)
..||+++.. ++..+|||||. ...+.+ ....+|++||+||.|.||++|+..+...+.. ..+++|.++.
T Consensus 15 ~dn~~~l~~~~~~~~iLiD~G~------~~~l~~---~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~ 85 (334)
T PRK02126 15 DDPGLYVDFLFERRALLFDLGD------LHHLPP---RELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPG 85 (334)
T ss_pred CCcEEEEEECCCCeEEEEcCCC------HHHHhh---cCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHH
Confidence 578888875 47889999997 122222 2235799999999999999999999876522 1267887654
Q ss_pred CCcccccccC--------CCCCCCce----------------------------eecCCCCeEEECCeeEEEEeCCCCCC
Q psy1547 106 TEKDEAQATD--------FVPENKTV----------------------------QTLTDGQLLKVEGATLRVIHTPGHTT 149 (216)
Q Consensus 106 ~~~~~~~~~~--------~~~~~~~~----------------------------~~~~~~~~~~~g~~~i~~~~~pgHt~ 149 (216)
.......... .+...... ...+++..+..++.+|+++++. |+-
T Consensus 86 ~~~~l~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~-H~v 164 (334)
T PRK02126 86 FADQVEHKLAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLD-HGI 164 (334)
T ss_pred HHHHHHHHhccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEcc-CCC
Confidence 3321111000 00111111 1122455567788899999887 776
Q ss_pred CceEEEEC
Q psy1547 150 DHIVLKLE 157 (216)
Q Consensus 150 ~~~~~~~~ 157 (216)
.+++|.++
T Consensus 165 p~~gy~~~ 172 (334)
T PRK02126 165 PCLAFALE 172 (334)
T ss_pred ceeEEEEE
Confidence 67777664
No 34
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.31 E-value=1.7e-12 Score=97.38 Aligned_cols=124 Identities=19% Similarity=0.338 Sum_probs=78.9
Q ss_pred eEEEecCCCCChhHHHHHHHHHhhCCC---CccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcccc--ccc--
Q psy1547 42 RLLLDTGEPDHMEYIENLKQVLNKESI---SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEA--QAT-- 114 (216)
Q Consensus 42 ~iliD~g~~~~~~~~~~~~~~l~~~~~---~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~--~~~-- 114 (216)
.+|||||.+.. +. .+...+..... ++++|++||.|.||+.|+..+.........++++++....... ..+
T Consensus 2 ~iLiD~g~~~~-~~--~~~~~~~~~~~~~~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~~i~~~~~~~~~l~~~~~~~~ 78 (194)
T PF12706_consen 2 RILIDCGPGTR-SL--RLRQQIMQELEDLPDIDAVFITHSHPDHIAGLPSLIPAWAKHPKPIYGPPETKEFLREYKFGIL 78 (194)
T ss_dssp EEEESE-TTHH-HH--THCHHHTCSSSSSGCEEEEE-SBSSHHHHTTHHHHHHHHHHCTTEEEECHHHHHHHHHHHHTHH
T ss_pred EEEEeCCCCcc-cc--cccccccccccccCCCCEEEECCCCccccCChHHHHHHhhcccceEEecHHHHHHHHhhhcccc
Confidence 68999998631 00 12212222111 7999999999999999987776664211127777764443322 111
Q ss_pred CC--CCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceE----EEEC--CCcEEEEcceec
Q psy1547 115 DF--VPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIV----LKLE--EENVVFSGDTIL 169 (216)
Q Consensus 115 ~~--~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~----~~~~--~~~vl~~GD~~~ 169 (216)
.. .........+..++.+.+++.+++++++. |..+..+ +.++ +.+++|+||+-+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~~~~~~~~g~~i~~~~~~i~~~gD~~~ 140 (194)
T PF12706_consen 79 DLYPEEDNFDIIEISPGDEFEIGDFRITPFPAN-HGPPSYGGNKGFVIEPDGKKIFYSGDTNY 140 (194)
T ss_dssp TTCCTTSGEEEEEECTTEEEEETTEEEEEEEEE-SSSCCEEECCEEEEEETTEEEEEETSSSS
T ss_pred cccccccceeEEEeccCceEEeceEEEEEEecc-ccccccccCceEEEecCCcceEEeeccch
Confidence 11 11224566778888999999999999766 7777765 6665 788999999765
No 35
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.28 E-value=1.2e-11 Score=90.51 Aligned_cols=135 Identities=19% Similarity=0.345 Sum_probs=79.1
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
+.+|++|+.+++.+|+||..... .......++|+|++||.|.||+.--. + ++ .
T Consensus 6 gha~~~ie~~g~~iliDP~~~~~---------~~~~~~~~~D~IlisH~H~DH~~~~~-l-~~-----~----------- 58 (163)
T PF13483_consen 6 GHASFLIETGGKRILIDPWFSSV---------GYAPPPPKADAILISHSHPDHFDPET-L-KR-----L----------- 58 (163)
T ss_dssp ETTEEEEEETTEEEEES--TTT-----------T-TSS-B-SEEEESSSSTTT-CCCC-C-CC-----H-----------
T ss_pred EeeEEEEEECCEEEEECCCCCcc---------CcccccCCCCEEEECCCccccCChhH-h-hh-----c-----------
Confidence 57899999999999999986421 01111247999999999999998611 1 11 1
Q ss_pred cccccCCCCCCCceeecCCCCeEEECCeeEEEEeCC-----CCCCC-ceEEEEC--CCcEEEEcceecCCCcccc-----
Q psy1547 110 EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP-----GHTTD-HIVLKLE--EENVVFSGDTILGEGTTVF----- 176 (216)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~p-----gHt~~-~~~~~~~--~~~vl~~GD~~~~~~~~~~----- 176 (216)
......+..++.+++++.+++.+++. ++..+ .++|.++ +.++++.||+........+
T Consensus 59 ----------~~~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~~~~~~ 128 (163)
T PF13483_consen 59 ----------DRDIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQLKQLGK 128 (163)
T ss_dssp ----------HTSSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHHHHH-S
T ss_pred ----------ccccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHHhcccC
Confidence 13466677788899999888888663 34334 5677665 6789999998542111000
Q ss_pred ---------c-cHHHHHHHHHHHHcCCCCeEEcCC
Q psy1547 177 ---------S-DLISYIESLRRIRSLKPDIIYPAH 201 (216)
Q Consensus 177 ---------~-~~~~~~~~l~~l~~~~~~~v~pgH 201 (216)
. ......++++.+..+++++++|.|
T Consensus 129 vDvl~~p~~g~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 129 VDVLFLPVGGPFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp -SEEEEE--TTTS--HHHHHHHHHHCT-SEEEEES
T ss_pred CCEEEecCCCCcccCHHHHHHHHHHcCCCEEEeCC
Confidence 1 112334555556668899999887
No 36
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.25 E-value=1.8e-11 Score=100.46 Aligned_cols=142 Identities=22% Similarity=0.277 Sum_probs=94.1
Q ss_pred CCCccCCCCceEEEEecCCceEEEecCCCCChh---HHHHH-HHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCc
Q psy1547 22 NPGPMTLQGTNTYILGTGSRRLLLDTGEPDHME---YIENL-KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDS 97 (216)
Q Consensus 22 ~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~---~~~~~-~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~ 97 (216)
..+.+..-+.+|+++++++..+|+|||.+.... ...-+ .-.+. ...+|+|++||.|.||+|-++.+.+--..
T Consensus 185 ~LGg~~EVGRSa~lv~T~eSrVLlDcG~n~a~~~~~~~Pyl~vpE~~--~~~lDAViiTHAHLDH~G~lP~LfkYgy~-- 260 (637)
T COG1782 185 ALGGFREVGRSALLVSTPESRVLLDCGVNVAGNGEDAFPYLDVPEFQ--PDELDAVIITHAHLDHCGFLPLLFKYGYD-- 260 (637)
T ss_pred eeccchhccceeEEEecCCceEEEeccccCCCCccccCccccccccc--ccccceEEEeecccccccchhhhhhcCCC--
Confidence 555566667899999999999999999875431 01100 01111 22699999999999999999998765322
Q ss_pred ceEeccCCCCccccc-----------ccCCCCCC--------CceeecCCCCeEEEC-CeeEEEEeCCCCCCCceEEEEC
Q psy1547 98 ATIWKFKGTEKDEAQ-----------ATDFVPEN--------KTVQTLTDGQLLKVE-GATLRVIHTPGHTTDHIVLKLE 157 (216)
Q Consensus 98 ~~i~~~~~~~~~~~~-----------~~~~~~~~--------~~~~~~~~~~~~~~g-~~~i~~~~~pgHt~~~~~~~~~ 157 (216)
-++|+.+.+...... .+...+-. ....+++-|++-++- +.++++++ .||--||.+..+.
T Consensus 261 GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtItldYgevTDIaPDirLTf~N-AGHILGSA~~HlH 339 (637)
T COG1782 261 GPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTITLDYGEVTDIAPDIRLTFYN-AGHILGSAMAHLH 339 (637)
T ss_pred CCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeeeeccCcccccCCccEEEEec-ccchhcceeeEEE
Confidence 477776644322110 11111111 345677777776664 68888888 7799999887664
Q ss_pred --C--CcEEEEccee
Q psy1547 158 --E--ENVVFSGDTI 168 (216)
Q Consensus 158 --~--~~vl~~GD~~ 168 (216)
+ -+++|+||.-
T Consensus 340 IGdGlyNi~yTGDfk 354 (637)
T COG1782 340 IGDGLYNIVYTGDFK 354 (637)
T ss_pred ecCCceeEEEecccc
Confidence 2 4799999963
No 37
>PRK00055 ribonuclease Z; Reviewed
Probab=99.25 E-value=2.8e-11 Score=95.48 Aligned_cols=77 Identities=25% Similarity=0.456 Sum_probs=53.2
Q ss_pred ccCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcC----CCcceE
Q psy1547 25 PMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN----PDSATI 100 (216)
Q Consensus 25 ~~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~----~~~~~i 100 (216)
+...+..+|++|+.++..+|||||.+. ..++.+. .....++++||+||.|+||++|+..+...+. ...+.+
T Consensus 14 ~~~~r~~~~~li~~~~~~iLiD~G~g~----~~~l~~~-~~~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~i 88 (270)
T PRK00055 14 PTPTRNVSSILLRLGGELFLFDCGEGT----QRQLLKT-GIKPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTI 88 (270)
T ss_pred CcCCCCCCEEEEEECCcEEEEECCHHH----HHHHHHc-CCCHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEE
Confidence 334556889999998999999999762 1222221 1112369999999999999999998765431 123678
Q ss_pred eccCCC
Q psy1547 101 WKFKGT 106 (216)
Q Consensus 101 ~~~~~~ 106 (216)
|.++..
T Consensus 89 y~p~~~ 94 (270)
T PRK00055 89 YGPKGI 94 (270)
T ss_pred ECCccH
Confidence 876543
No 38
>KOG4736|consensus
Probab=99.22 E-value=3e-11 Score=92.99 Aligned_cols=157 Identities=22% Similarity=0.228 Sum_probs=100.7
Q ss_pred ceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCccc
Q psy1547 31 TNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDE 110 (216)
Q Consensus 31 ~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~ 110 (216)
.+..++.++++++++|+|.+. +..-......|+.|++||.+++|.|++..|... ++..+.-.....
T Consensus 95 ~~~tl~~d~~~v~v~~~gls~--------lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~~s------p~l~~s~e~~gr 160 (302)
T KOG4736|consen 95 GQITLVVDGGDVVVVDTGLSV--------LAKEGVTLDQIDSVVITHKSPGHLGNNNLFPQS------PILYHSMEYIGR 160 (302)
T ss_pred cccceeecCCceEEEecCCch--------hhhcCcChhhcceeEEeccCcccccccccccCC------HHHhhhhhhcCC
Confidence 445677888889999999872 111122234799999999999999999887665 222221111100
Q ss_pred ccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC----CCcEEEEcceecCCCcccc----------
Q psy1547 111 AQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE----EENVVFSGDTILGEGTTVF---------- 176 (216)
Q Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~----~~~vl~~GD~~~~~~~~~~---------- 176 (216)
......|+.+..++++ ..+++..+|||+.-.+.+.+. -+.+.++||++.......-
T Consensus 161 ---------~~~pt~l~e~~~~~l~-~~~~V~~TpGht~~~isvlv~n~~~~GTv~itGDLf~~~~dlde~d~i~~~e~s 230 (302)
T KOG4736|consen 161 ---------HVTPTELDERPYLKLS-PNVEVWKTPGHTQHDISVLVHNVDLYGTVAITGDLFPREEDLDEKDDIMSQEGS 230 (302)
T ss_pred ---------ccChhhhccCCccccC-CceeEeeCCCCCCcceEEEEEeecccceEEEEeecccCCccccchhhhhhhccC
Confidence 0123456667777776 468899999999999988886 3689999997654322111
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEcCCCccccCccccc
Q psy1547 177 SDLISYIESLRRIRSLKPDIIYPAHGPVVEVGLSFS 212 (216)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~~v~pgHg~~~~~~~~~~ 212 (216)
.|...-+++-+++. .=+|+++||||++++....++
T Consensus 231 ~d~~~kr~~r~~~v-~l~D~ivpgHg~~f~v~~~~~ 265 (302)
T KOG4736|consen 231 EDNAAKRQSRNRYV-CLADWIVPGHGPPFRVLPNVR 265 (302)
T ss_pred CchhhhhhhhhcEE-EEeeeeecCCCCceeechhcc
Confidence 11111122222222 236899999999997655443
No 39
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.18 E-value=2.3e-10 Score=93.17 Aligned_cols=133 Identities=14% Similarity=0.239 Sum_probs=81.3
Q ss_pred CccEEEecccCccccC--ChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCC-
Q psy1547 69 SLEHIVLSHWHNDHVG--GLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP- 145 (216)
Q Consensus 69 ~i~~v~~TH~H~DH~g--g~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~p- 145 (216)
+||+|++||.|.||+. .+..+.+..+ ..+.++.+.......... -.+..++..++.|+++.+++.+|+++++.
T Consensus 109 ~IDaVLiTH~H~DHlD~~tl~~l~~~~~-~~~~~v~p~~~~~~~~~~---Gvp~~rv~~v~~Ge~i~ig~v~It~lpa~h 184 (355)
T PRK11709 109 EIDAVLATHDHSDHIDVNVAAAVLQNCA-DHVKFIGPQACVDLWIGW---GVPKERCIVVKPGDVVKVKDIKIHALDSFD 184 (355)
T ss_pred CCCEEEECCCcccccChHHHHHHHhhcC-CCcEEEEcHHHHHHHHhc---CCCcceEEEecCCCcEEECCEEEEEEeccc
Confidence 6999999999999995 2233333321 124455544322211111 11234678999999999999999998762
Q ss_pred ---------CCCC-----------CceEEEE--CCCcEEEEcceecCCCc-----------cc--ccc-------HHHHH
Q psy1547 146 ---------GHTT-----------DHIVLKL--EEENVVFSGDTILGEGT-----------TV--FSD-------LISYI 183 (216)
Q Consensus 146 ---------gHt~-----------~~~~~~~--~~~~vl~~GD~~~~~~~-----------~~--~~~-------~~~~~ 183 (216)
.|+. ..+++.+ ++.+++|+||+.+.... .. +.. -....
T Consensus 185 ~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~~~~i~~~~~iDvall~iG~~p~~~~~hm~p~ 264 (355)
T PRK11709 185 RTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNYFAKHGNDHQIDVALGSYGENPRGITDKMTSI 264 (355)
T ss_pred cccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHHHHHHHhcCCCCEEEecCCCCCCCCcCCCCHH
Confidence 1221 1356666 47889999998653210 00 000 01134
Q ss_pred HHHHHHHcCCCCeEEcCCCccc
Q psy1547 184 ESLRRIRSLKPDIIYPAHGPVV 205 (216)
Q Consensus 184 ~~l~~l~~~~~~~v~pgHg~~~ 205 (216)
++++...+++++.++|.|-..+
T Consensus 265 ea~~~a~~l~ak~vIpiH~dtf 286 (355)
T PRK11709 265 DILRMAESLNAKVVIPVHHDIW 286 (355)
T ss_pred HHHHHHHHcCCCEEEEEChhhc
Confidence 6677777889999999997554
No 40
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.15 E-value=8.2e-10 Score=83.42 Aligned_cols=168 Identities=17% Similarity=0.273 Sum_probs=103.0
Q ss_pred EEEEecCCceEEEecCCCCCh------------hHHHHHHHHHhhCCCCccEEEecccCccccCCh---------HHHHh
Q psy1547 33 TYILGTGSRRLLLDTGEPDHM------------EYIENLKQVLNKESISLEHIVLSHWHNDHVGGL---------KDIFE 91 (216)
Q Consensus 33 ~~li~~~~~~iliD~g~~~~~------------~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~---------~~~~~ 91 (216)
+.++++.+-.||||+|-.-.+ +.+.+..+.+...-++.+.+.+||.|.||.--. ..-++
T Consensus 17 At~vet~dv~ILiDpGVsLaPkRy~LPPh~~E~erl~~~r~~i~~~ak~a~VitISHYHYDHhtPf~~~~y~~s~e~~~e 96 (304)
T COG2248 17 ATFVETKDVGILIDPGVSLAPKRYGLPPHQRELERLRQAREKIQRYAKKADVITISHYHYDHHTPFFDGIYEASGETAKE 96 (304)
T ss_pred hheeecCCeeEEECCccccCccccCCCCCHHHHHHHHHHHHHHHHHHhhCCEEEEeeeccccCCccccchhhhcccchHH
Confidence 667999999999999965422 134455555665556789999999999998641 01111
Q ss_pred hcCCCcceEeccCCCCcccccc------cCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCC-c-----eEEEEC--
Q psy1547 92 HINPDSATIWKFKGTEKDEAQA------TDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTD-H-----IVLKLE-- 157 (216)
Q Consensus 92 ~~~~~~~~i~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~-~-----~~~~~~-- 157 (216)
.|. +++-...++.......+. ............+.+|.++.+|+..|++-+.--|.++ + +++.+.
T Consensus 97 iY~-gK~lLlKhPte~IN~SQ~~Ra~~fl~~~~~~~~~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg 175 (304)
T COG2248 97 IYK-GKLLLLKHPTENINRSQRRRAYRFLESLKDIAREIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDG 175 (304)
T ss_pred Hhc-CcEEEecCchhhhCHHHHHHHHHHHHHhhhhcceeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecC
Confidence 121 223333343322222221 1112222457788999999999999999876447766 2 344444
Q ss_pred CCcEEEEccee--------------------cCCCcccc-------ccHHHHHHHHHHHHcCCCC-eEEcCC
Q psy1547 158 EENVVFSGDTI--------------------LGEGTTVF-------SDLISYIESLRRIRSLKPD-IIYPAH 201 (216)
Q Consensus 158 ~~~vl~~GD~~--------------------~~~~~~~~-------~~~~~~~~~l~~l~~~~~~-~v~pgH 201 (216)
+.+++|++|.- .++...++ .+.+..++.|+++.+.... +|+-.|
T Consensus 176 ~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpty~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHH 247 (304)
T COG2248 176 KSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPTYLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHH 247 (304)
T ss_pred CeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCchhHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeeh
Confidence 57899999952 11122211 3566777888888887766 555555
No 41
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=98.98 E-value=4.2e-09 Score=82.69 Aligned_cols=170 Identities=16% Similarity=0.196 Sum_probs=97.0
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
+.+|++|+.++..+|||+..+..........-.......++|+|++||.|.||++-......+... ...+..+......
T Consensus 13 Gha~~lie~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~~-~~~~~~p~~~~~~ 91 (258)
T COG2220 13 GHAAFLIETGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTNK-APVVVVPLGAGDL 91 (258)
T ss_pred cceEEEEEECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcCC-CcEEEeHHHHHHH
Confidence 689999999999999999887533211100000011123699999999999999977655444221 1223332221111
Q ss_pred cccccCCCCCCCceeecCCCCeEEECCeeEEEEeC---CC-CCCC--------ceEEEE--CCCcEEEEcceecCC----
Q psy1547 110 EAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHT---PG-HTTD--------HIVLKL--EEENVVFSGDTILGE---- 171 (216)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~---pg-Ht~~--------~~~~~~--~~~~vl~~GD~~~~~---- 171 (216)
... +-........+..++++.+++.++++..+ +. +.++ .+++.+ ++.++++.||+-+..
T Consensus 92 ~~~---~g~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iyh~GDt~~~~~~~~ 168 (258)
T COG2220 92 LIR---DGVEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVYHAGDTGYLFLIIE 168 (258)
T ss_pred HHh---cCCCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEEeccCccHHHHhhh
Confidence 101 11222457778889999999888665543 22 3322 344444 467999999984300
Q ss_pred ---C-c----ccccc-----HHHHHHHHHHHHcCCCCeEEcCCCc
Q psy1547 172 ---G-T----TVFSD-----LISYIESLRRIRSLKPDIIYPAHGP 203 (216)
Q Consensus 172 ---~-~----~~~~~-----~~~~~~~l~~l~~~~~~~v~pgHg~ 203 (216)
. . ..+.. .....+..+..+.+++++++|.|-.
T Consensus 169 ~~~~~~DvallPig~~~~~~~~~~~~~~~~~~~l~~~~viP~Hy~ 213 (258)
T COG2220 169 ELDGPVDVALLPIGGYPNATMMPPEAAVAAAEVLRPKRVIPMHYG 213 (258)
T ss_pred hhcCCccEEEeccCCCCCCccCCHHHHHHHHHHhcCCeEEeeccc
Confidence 0 0 00011 1122344444466889999999965
No 42
>KOG1136|consensus
Probab=98.91 E-value=2.4e-09 Score=84.06 Aligned_cols=138 Identities=20% Similarity=0.322 Sum_probs=85.7
Q ss_pred CCCceEEEEecCCceEEEecCCCCChhHHHHH--HHHHhhCC---CCccEEEecccCccccCChHHHHhhcCCCcceEec
Q psy1547 28 LQGTNTYILGTGSRRLLLDTGEPDHMEYIENL--KQVLNKES---ISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWK 102 (216)
Q Consensus 28 ~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~--~~~l~~~~---~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~ 102 (216)
..+.+|.++.-+++.+++|||.--...--+++ -.++.+.+ .-||.|++||.|.||+|.+++|.+...-+ -+||.
T Consensus 14 dvGrSCilvsi~Gk~iM~DCGMHMG~nD~rRfPdFSyI~~~g~~~~~idCvIIsHFHlDHcGaLPyfsEv~GY~-GPIYM 92 (501)
T KOG1136|consen 14 DVGRSCILVSIGGKNIMFDCGMHMGFNDDRRFPDFSYISKSGRFTDAIDCVIISHFHLDHCGALPYFSEVVGYD-GPIYM 92 (501)
T ss_pred ccCceEEEEEECCcEEEEecccccccCccccCCCceeecCCCCcccceeEEEEeeecccccccccchHhhhCCC-CceEE
Confidence 34678999999999999999864311100111 01222222 35999999999999999999998874322 23443
Q ss_pred cCCCCccc---------cc---ccCC-CCCC-------CceeecCCCCeEEE-CCeeEEEEeCCCCCCCceEEEEC--CC
Q psy1547 103 FKGTEKDE---------AQ---ATDF-VPEN-------KTVQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLE--EE 159 (216)
Q Consensus 103 ~~~~~~~~---------~~---~~~~-~~~~-------~~~~~~~~~~~~~~-g~~~i~~~~~pgHt~~~~~~~~~--~~ 159 (216)
.-.+.+.- .. .+.. .-.. .++..+.-.+++.. ++..|+++. .||--|..++++. +.
T Consensus 93 t~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~i~l~qt~~vD~dl~IrayY-AGHVLGAaMf~ikvGd~ 171 (501)
T KOG1136|consen 93 TYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVAIDLHQTIQVDEDLQIRAYY-AGHVLGAAMFYIKVGDQ 171 (501)
T ss_pred ecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeEeeehheEEecccceeeeee-cccccceeEEEEEecce
Confidence 22111110 00 0000 0000 23445555566666 367788887 6899999999997 67
Q ss_pred cEEEEcce
Q psy1547 160 NVVFSGDT 167 (216)
Q Consensus 160 ~vl~~GD~ 167 (216)
.++++||.
T Consensus 172 svvYTGDY 179 (501)
T KOG1136|consen 172 SVVYTGDY 179 (501)
T ss_pred eEEEecCc
Confidence 89999995
No 43
>KOG1137|consensus
Probab=98.86 E-value=2.9e-09 Score=88.37 Aligned_cols=139 Identities=14% Similarity=0.244 Sum_probs=86.2
Q ss_pred CCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhC-CCCccEEEecccCccccCChHHHHhhcCCCcceEeccCC
Q psy1547 27 TLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKE-SISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKG 105 (216)
Q Consensus 27 ~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~-~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~ 105 (216)
...|.+|.+++..++.++.|||.-....-... .-.++.. ...+|.+++||+|.||++.++++.++..-.+-.+..++.
T Consensus 23 ~EVGRSC~ile~kGk~iMld~gvhpaysg~as-lpf~d~vd~s~id~llIthFhldh~aslp~~~qkTsf~grvfmth~T 101 (668)
T KOG1137|consen 23 NEVGRSCHILEYKGKTIMLDCGVHPAYSGMAS-LPFYDEVDLSAIDPLLITHFHLDHAASLPFTLQKTSFIGRVFMTHPT 101 (668)
T ss_pred cccCceEEEEEecCeEEEeccccCcccccccc-ccchhhcccccccHHHHhhhhhhhcccccceeeeccccceeEEecch
Confidence 34468899999999999999997643221111 1111111 236999999999999999999998773211111122211
Q ss_pred CCcc--------cc-cccC--CC-------CCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEEC--CCcEEEEc
Q psy1547 106 TEKD--------EA-QATD--FV-------PENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE--EENVVFSG 165 (216)
Q Consensus 106 ~~~~--------~~-~~~~--~~-------~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~G 165 (216)
.... .. ..+. .+ ....++..++-.++.+..|.++..++ .||--|.+++.++ +-++||+|
T Consensus 102 kAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~dKie~idfhe~~ev~gIkf~p~~-aGhVlgacMf~veiagv~lLyTG 180 (668)
T KOG1137|consen 102 KAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMDKIETIDFHETVEVNGIKFWPYH-AGHVLGACMFMVEIAGVRLLYTG 180 (668)
T ss_pred HHHHHhhhhcceEeeeccCccccccchhHHHhhhhheeeeeccccccCCeEEEeec-cchhhhheeeeeeeceEEEEecc
Confidence 1000 00 0000 00 00134455555666677787777777 7899999999987 67999999
Q ss_pred ce
Q psy1547 166 DT 167 (216)
Q Consensus 166 D~ 167 (216)
|.
T Consensus 181 d~ 182 (668)
T KOG1137|consen 181 DY 182 (668)
T ss_pred cc
Confidence 94
No 44
>KOG1135|consensus
Probab=98.80 E-value=2.8e-08 Score=84.53 Aligned_cols=134 Identities=21% Similarity=0.289 Sum_probs=90.1
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKD 109 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~ 109 (216)
+.-||+++-++-.+|||||++.. +-....+.+...-..||+|++||.++-|.||++|......-. ++||+.-.....
T Consensus 14 ~~~cyllqiD~~~iLiDcGwd~~--f~~~~i~~l~~~i~~iDaILLShpd~~hlGaLpY~~~k~gl~-~~VYAT~PV~~m 90 (764)
T KOG1135|consen 14 GPLCYLLQIDGVRILIDCGWDES--FDMSMIKELKPVIPTIDAILLSHPDILHLGALPYAVGKLGLN-APVYATLPVIKM 90 (764)
T ss_pred CcceEEEEEcCeEEEEeCCCcch--hccchhhhhhcccccccEEEecCCChHHhccchhhHhhCCcc-ceEEEecchhhh
Confidence 46699999999999999999843 223334444433347999999999999999999987775432 677765422211
Q ss_pred ccc--------------ccCCC-----CCCCceeecCCCCeEEEC----CeeEEEEeCCCCCCCceEEEEC--CCcEEEE
Q psy1547 110 EAQ--------------ATDFV-----PENKTVQTLTDGQLLKVE----GATLRVIHTPGHTTDHIVLKLE--EENVVFS 164 (216)
Q Consensus 110 ~~~--------------~~~~~-----~~~~~~~~~~~~~~~~~g----~~~i~~~~~pgHt~~~~~~~~~--~~~vl~~ 164 (216)
... +.... ....++..++-.+...+- |.+|++++ .||..|.+.+.+- +++++++
T Consensus 91 G~m~myD~~~S~~~~~df~l~sldDvd~aFd~I~~LKYsQ~v~L~gk~~Gl~itayn-AGhmiGGsIWkI~k~~E~ivYa 169 (764)
T KOG1135|consen 91 GQMFMYDLYRSHGNVGDFDLFSLDDVDAAFDKIIQLKYSQPVALKGKGSGLTITAYN-AGHMIGGSIWKISKVGEDIVYA 169 (764)
T ss_pred hhhhHHHHHhcccccccccccchhhhHHHHhheeeeeccceEEeccccCceEEeeec-CCCccCceEEEEEecCceEEEE
Confidence 100 00000 011455666667776664 34677776 6899999999885 6889999
Q ss_pred cce
Q psy1547 165 GDT 167 (216)
Q Consensus 165 GD~ 167 (216)
-|.
T Consensus 170 vd~ 172 (764)
T KOG1135|consen 170 VDF 172 (764)
T ss_pred Eec
Confidence 884
No 45
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=98.68 E-value=6.3e-08 Score=77.21 Aligned_cols=76 Identities=20% Similarity=0.354 Sum_probs=51.5
Q ss_pred CccCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcC--CC--cce
Q psy1547 24 GPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN--PD--SAT 99 (216)
Q Consensus 24 ~~~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~--~~--~~~ 99 (216)
.+...+...+++++.++..+|||||.+. ..++.+. .....+|++||+||.|.||+.|+..+..... .. .+.
T Consensus 13 ~Pt~~r~~~s~ll~~~~~~~L~DcGeGt----~~~l~~~-~~~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~ 87 (292)
T COG1234 13 VPTKDRNVSSILLRLEGEKFLFDCGEGT----QHQLLRA-GLPPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLK 87 (292)
T ss_pred CCcCccccceeEEEeCCeeEEEECCHhH----HHHHHHh-cCChhhccEEEeeccccchhcCcHHHHHHhhccCCCCcee
Confidence 3444567889999988889999999873 2333322 2123369999999999999999996554422 11 156
Q ss_pred EeccC
Q psy1547 100 IWKFK 104 (216)
Q Consensus 100 i~~~~ 104 (216)
+|.++
T Consensus 88 iygP~ 92 (292)
T COG1234 88 IYGPP 92 (292)
T ss_pred EECCc
Confidence 77664
No 46
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=98.63 E-value=6.5e-07 Score=70.75 Aligned_cols=47 Identities=34% Similarity=0.499 Sum_probs=33.7
Q ss_pred ceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcC
Q psy1547 41 RRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN 94 (216)
Q Consensus 41 ~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~ 94 (216)
++++||+|... ....+......+++||+||.|.||+.|+..|+..+.
T Consensus 41 ~~~lid~g~~~-------~~~~~~~~~~~idai~~TH~H~DHi~Gl~~l~~~~~ 87 (269)
T COG1235 41 KTLLIDAGPDL-------RDQGLRLGVSDLDAILLTHEHSDHIQGLDDLRRAYT 87 (269)
T ss_pred eeEEEecChhH-------HhhhhcccccccCeEEEecccHHhhcChHHHHHHhc
Confidence 37788888652 111111111369999999999999999999999876
No 47
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=98.22 E-value=7.8e-06 Score=64.05 Aligned_cols=67 Identities=15% Similarity=0.124 Sum_probs=42.3
Q ss_pred ceEEEEecCCceEEEe-cCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc--C---CCcceEeccC
Q psy1547 31 TNTYILGTGSRRLLLD-TGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI--N---PDSATIWKFK 104 (216)
Q Consensus 31 ~n~~li~~~~~~iliD-~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~--~---~~~~~i~~~~ 104 (216)
..++++. ....+|+| +|.+.. ..+.+.+. .++.||+||.|.||++|+..+.... . .....|+.++
T Consensus 10 ~~t~~~~-~~~~ilfD~ag~g~~----~~l~~k~~----~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~ 80 (277)
T TIGR02650 10 FFSTIIY-SPEEIIFDAAEEGSS----TLGGKKVA----AFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPK 80 (277)
T ss_pred heEEEEE-Cchhheehhhcccch----hHHhhhHh----hcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCc
Confidence 3455554 44478999 887742 22333333 5899999999999999996554421 1 1125677766
Q ss_pred CC
Q psy1547 105 GT 106 (216)
Q Consensus 105 ~~ 106 (216)
..
T Consensus 81 g~ 82 (277)
T TIGR02650 81 EG 82 (277)
T ss_pred ch
Confidence 53
No 48
>KOG2121|consensus
Probab=98.01 E-value=2.2e-06 Score=73.99 Aligned_cols=67 Identities=25% Similarity=0.366 Sum_probs=47.4
Q ss_pred CCccCCCCceEEEEecCCce-EEEecCCCCChhHHHHHHHHHhh-----CCCCccEEEecccCccccCChHHHHhhc
Q psy1547 23 PGPMTLQGTNTYILGTGSRR-LLLDTGEPDHMEYIENLKQVLNK-----ESISLEHIVLSHWHNDHVGGLKDIFEHI 93 (216)
Q Consensus 23 ~~~~~~~~~n~~li~~~~~~-iliD~g~~~~~~~~~~~~~~l~~-----~~~~i~~v~~TH~H~DH~gg~~~~~~~~ 93 (216)
..|.-.++..+++|+.+-.. ||.|||.+. +-++.+..+. .-.++++|++||.|.||..|+..+.+++
T Consensus 453 aiPskyRNVSS~lv~i~~~~~IlLDCGEgT----lgql~R~YG~~~~~~~lr~LraI~ISHlHADHh~Gl~~vL~~r 525 (746)
T KOG2121|consen 453 AIPSKYRNVSSILVRIDSDDSILLDCGEGT----LGQLVRHYGVENVDTALRKLRAIFISHLHADHHLGLISVLQAR 525 (746)
T ss_pred cCCCcccceEEEEEeccCCccEEeecCCch----HHHHHHHhhhcchHHHHHhHHHHHHHhhcccccccHHHHHHHH
Confidence 34444667889999885555 999999874 3344443331 1126899999999999999998776653
No 49
>KOG1361|consensus
Probab=97.84 E-value=3.6e-05 Score=64.33 Aligned_cols=91 Identities=21% Similarity=0.352 Sum_probs=66.8
Q ss_pred CccEEEecccCccccCChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCC
Q psy1547 69 SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHT 148 (216)
Q Consensus 69 ~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt 148 (216)
...+=|+||.|.||+.|+..-... -.+|++.-+.......-. -....++.++-++.+.+.+..+.++.+. |.
T Consensus 112 ~~s~yFLsHFHSDHy~GL~~sW~~-----p~lYCS~ita~Lv~~~~~--v~~~~i~~l~l~~~~~i~~~~vt~ldAn-HC 183 (481)
T KOG1361|consen 112 GCSAYFLSHFHSDHYIGLTKSWSH-----PPLYCSPITARLVPLKVS--VTKQSIQALDLNQPLEIPGIQVTLLDAN-HC 183 (481)
T ss_pred ccceeeeecccccccccccccccC-----Ccccccccchhhhhhhcc--cChhhceeecCCCceeecceEEEEeccc-cC
Confidence 578999999999999988754444 237877765544322111 1224567778888888888888888855 99
Q ss_pred CCceEEEEC---CCcEEEEcce
Q psy1547 149 TDHIVLKLE---EENVVFSGDT 167 (216)
Q Consensus 149 ~~~~~~~~~---~~~vl~~GD~ 167 (216)
||++++.++ +..+|++||+
T Consensus 184 PGa~mf~F~~~~~~~~lhtGDF 205 (481)
T KOG1361|consen 184 PGAVMFLFELSFGPCILHTGDF 205 (481)
T ss_pred CCceEEEeecCCCceEEecCCc
Confidence 999999997 4589999995
No 50
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=97.28 E-value=0.0051 Score=49.92 Aligned_cols=38 Identities=24% Similarity=0.285 Sum_probs=25.2
Q ss_pred CccEEEecccCccccCChHHHHhhcCC---CcceEeccCCC
Q psy1547 69 SLEHIVLSHWHNDHVGGLKDIFEHINP---DSATIWKFKGT 106 (216)
Q Consensus 69 ~i~~v~~TH~H~DH~gg~~~~~~~~~~---~~~~i~~~~~~ 106 (216)
-|...++||.|.||+.|+-.-...+.. ...+||..+.+
T Consensus 79 ~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~t 119 (335)
T PF02112_consen 79 HIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPST 119 (335)
T ss_pred hhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHH
Confidence 488999999999999998533223321 23566665543
No 51
>PF14234 DUF4336: Domain of unknown function (DUF4336)
Probab=97.23 E-value=0.011 Score=46.80 Aligned_cols=154 Identities=10% Similarity=-0.014 Sum_probs=85.1
Q ss_pred cceEEeccCCCCccCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 13 SRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 13 ~~v~~v~~~~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
++||.+...........++.+.+|+-.++.++|-+-....++..+. ++.+...+-+|+||+.-.....|.--+..++++
T Consensus 2 ~~IW~~eq~~~~~~v~v~~RMTVVrL~~G~L~VhSPvapT~el~~~-l~~L~~~~G~VkyIVaPn~~lEH~lfl~~w~~a 80 (285)
T PF14234_consen 2 DQIWTFEQPQGIFYVPVPTRMTVVRLSDGGLWVHSPVAPTPELKAE-LDELEAQHGPVKYIVAPNKGLEHHLFLGPWARA 80 (285)
T ss_pred CcEEEEeccccccceeecceEEEEEECCCCEEEECCCCCCHHHHHH-HHHHhccCCceeEEEcCCcchhHHHhHHHHHHH
Confidence 4566665332222223457788888765544554444443443333 333433345899999987655688889999999
Q ss_pred cCCCcceEeccCCCCcccccccCCCCCCCceeecC-CCCeEEE-CCeeEEEEe---CCCCCCCceEEEECCCcEEEEcce
Q psy1547 93 INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLT-DGQLLKV-EGATLRVIH---TPGHTTDHIVLKLEEENVVFSGDT 167 (216)
Q Consensus 93 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-g~~~i~~~~---~pgHt~~~~~~~~~~~~vl~~GD~ 167 (216)
||. .++|..+.....................+. ......+ ++...+.+. ...|.-..++++.+..+.|+..|+
T Consensus 81 fP~--A~v~~~Pg~~s~p~~lp~~~~g~~~~~~l~~~~~~~pw~~eid~~~l~~~~lg~~~~~EvvFfHk~SkTLIvTDl 158 (285)
T PF14234_consen 81 FPD--AKVWAPPGQWSFPLNLPLSWLGIPRDKTLPDDSDPPPWADEIDQEILGPLDLGSGPFQEVVFFHKPSKTLIVTDL 158 (285)
T ss_pred CCC--CEEEeCCCcccccccCchhhcCCccccccccccCCCCchhheeeEEecccccCCCceeEEEEEECCCCeEEhhhc
Confidence 996 688877654321111000000001111111 1111112 122334443 245777889999999999999998
Q ss_pred ec
Q psy1547 168 IL 169 (216)
Q Consensus 168 ~~ 169 (216)
++
T Consensus 159 l~ 160 (285)
T PF14234_consen 159 LF 160 (285)
T ss_pred hh
Confidence 75
No 52
>KOG3798|consensus
Probab=96.51 E-value=0.015 Score=44.78 Aligned_cols=137 Identities=21% Similarity=0.213 Sum_probs=75.5
Q ss_pred CCCceEEEEecCCceEEEecCCCCChh-------HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceE
Q psy1547 28 LQGTNTYILGTGSRRLLLDTGEPDHME-------YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATI 100 (216)
Q Consensus 28 ~~~~n~~li~~~~~~iliD~g~~~~~~-------~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i 100 (216)
..+..|.++.-++-.+|-|+-+..... ....-...+.. ..+++.++.+|.|+||...-. + ..+......+
T Consensus 85 wlg~a~~~~~~~g~~~~tdpvf~d~~if~s~gPkry~~pp~~~~~-~p~~d~~~vsh~h~dhld~~~-~-~~~~~~~~~~ 161 (343)
T KOG3798|consen 85 WLGHATVLVDLEGVKFVTDPVWADRASFTSFGPKRYRPPPMKLED-LPDLDFAVVSHDHYDHLDADA-V-KKITDRNPQI 161 (343)
T ss_pred hhcceeEEEeccCcEEecchhhccchhhcccCcccccCCchhhcc-CCCCceeccccccccccchHH-H-HhhhccCccc
Confidence 335678888888888888876543211 11111122221 226999999999999987433 2 2222112233
Q ss_pred eccCCCCcccccccCCCCCCCceeecCCCCe--EEECCeeEEEEeCCC-CCCC------------ceEEEECCCcEEEEc
Q psy1547 101 WKFKGTEKDEAQATDFVPENKTVQTLTDGQL--LKVEGATLRVIHTPG-HTTD------------HIVLKLEEENVVFSG 165 (216)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~g~~~i~~~~~pg-Ht~~------------~~~~~~~~~~vl~~G 165 (216)
|.-+.....-+ ....-.....+..+.+ +.-++.++++..+|. |.-+ +.++.-+..+.+|+|
T Consensus 162 wfvp~g~k~~m----~~~gc~~v~el~wwe~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaG 237 (343)
T KOG3798|consen 162 WFVPLGMKKWM----EGDGSSTVTELNWGESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAG 237 (343)
T ss_pred eeehhhhhhee----cCCCCCceeEeeccchhceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEecC
Confidence 43322111100 0011123455555554 344677888888876 6633 455666677999999
Q ss_pred ceecCC
Q psy1547 166 DTILGE 171 (216)
Q Consensus 166 D~~~~~ 171 (216)
|+-+..
T Consensus 238 DTGyc~ 243 (343)
T KOG3798|consen 238 DTGYCD 243 (343)
T ss_pred CCCccc
Confidence 986543
No 53
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=96.19 E-value=0.016 Score=34.90 Aligned_cols=49 Identities=24% Similarity=0.327 Sum_probs=36.6
Q ss_pred eEEEEecCCceEEE-ecCCCCChhHHHHHHHHHhhCCCCccEEEecccC-ccccCC
Q psy1547 32 NTYILGTGSRRLLL-DTGEPDHMEYIENLKQVLNKESISLEHIVLSHWH-NDHVGG 85 (216)
Q Consensus 32 n~~li~~~~~~ili-D~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H-~DH~gg 85 (216)
.|+++..+.+..|| ++|.+.+ + +...-+..-.++..||+|+.. |+++||
T Consensus 13 p~l~l~~d~~rYlFGn~gEGtQ----R-~~~e~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 13 PSLLLFFDSRRYLFGNCGEGTQ----R-ACNEHKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred CEEEEEeCCceEEeccCCcHHH----H-HHHHcCCCccccceEEECCCCcccccCC
Confidence 68889999999999 9998742 2 222212223379999999999 999987
No 54
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=94.52 E-value=0.05 Score=42.50 Aligned_cols=99 Identities=21% Similarity=0.168 Sum_probs=56.9
Q ss_pred CccEEEecccCccccCChHHHHh-hcCCCcceEeccCCCCcccc--cccCCCC--------CCCceeecCCCCeEEECCe
Q psy1547 69 SLEHIVLSHWHNDHVGGLKDIFE-HINPDSATIWKFKGTEKDEA--QATDFVP--------ENKTVQTLTDGQLLKVEGA 137 (216)
Q Consensus 69 ~i~~v~~TH~H~DH~gg~~~~~~-~~~~~~~~i~~~~~~~~~~~--~~~~~~~--------~~~~~~~~~~~~~~~~g~~ 137 (216)
.|.--+|||+|.||+.|+-.=.. ..+..+-.||..+..-.... .++.-.+ ...+.+.+++.+...+.=.
T Consensus 112 ~I~~y~ITH~HLDHIsGlVinSp~~~~qkkkTI~gl~~tIDvL~khvFN~lvWP~lt~~gs~~~~~qvv~P~~~~slt~t 191 (356)
T COG5212 112 SINSYFITHAHLDHISGLVINSPDDSKQKKKTIYGLADTIDVLRKHVFNWLVWPNLTDSGSGTYRMQVVRPAQSLSLTLT 191 (356)
T ss_pred hhhheEeccccccchhceeecCccccccCCceEEechhHHHHHHHHhhcccccCCcccccCceEEEEEeChhHeeeeeee
Confidence 58889999999999998743211 12223356777654322211 1111111 2356788888888777644
Q ss_pred eEEEEeCCC-CCC------CceEEEECC----CcEEEEcce
Q psy1547 138 TLRVIHTPG-HTT------DHIVLKLEE----ENVVFSGDT 167 (216)
Q Consensus 138 ~i~~~~~pg-Ht~------~~~~~~~~~----~~vl~~GD~ 167 (216)
.+...+.|- |.. -+.++.+++ +-+++.||.
T Consensus 192 ~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDv 232 (356)
T COG5212 192 RLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDV 232 (356)
T ss_pred eecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCC
Confidence 455555442 332 246666753 447778994
No 55
>KOG3592|consensus
Probab=92.71 E-value=0.2 Score=44.29 Aligned_cols=53 Identities=15% Similarity=0.406 Sum_probs=38.0
Q ss_pred EEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 35 ILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 35 li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
|..-++-.||||.|...-..+. .+.+.++ +||.|++||.-.|..+|++-+.++
T Consensus 52 LFavnGf~iLv~GgserKS~fw-klVrHld----rVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 52 LFAVNGFNILVNGGSERKSCFW-KLVRHLD----RVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred eEeecceEEeecCCcccccchH-HHHHHHh----hhhhhhhcccccCccccchHHHHH
Confidence 3444667889999876422222 2344443 699999999999999999988776
No 56
>COG0420 SbcD DNA repair exonuclease [DNA replication, recombination, and repair]
Probab=71.56 E-value=5.9 Score=33.09 Aligned_cols=54 Identities=20% Similarity=0.335 Sum_probs=39.8
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCC--eEEcCCCccccCcccccc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPD--IIYPAHGPVVEVGLSFSL 213 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~v~pgHg~~~~~~~~~~~ 213 (216)
+-|+++|| +|....+.......+.+.++++...+.- .+...|+.+........+
T Consensus 42 D~vliAGD-lFd~~~Ps~~a~~~~~~~l~~l~~~~Ipv~~I~GNHD~~~~~~~~~~~ 97 (390)
T COG0420 42 DFVLIAGD-LFDTNNPSPRALKLFLEALRRLKDAGIPVVVIAGNHDSPSRLSEASPL 97 (390)
T ss_pred CEEEEccc-cccCCCCCHHHHHHHHHHHHHhccCCCcEEEecCCCCchhccccccch
Confidence 45899999 5666777777778888888888875444 777779888876665444
No 57
>PF14572 Pribosyl_synth: Phosphoribosyl synthetase-associated domain; PDB: 2H07_B 2H06_B 3S5J_B 2HCR_A 3EFH_A 2H08_A 1DKR_B 1DKU_B 1IBS_B 2JI4_A ....
Probab=58.62 E-value=14 Score=27.41 Aligned_cols=51 Identities=18% Similarity=0.241 Sum_probs=29.3
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
+.+|+++.+ +||+|.. +-...+.|++.|-.=.+++.||+-. .+++....+.
T Consensus 83 gk~~IIvDD-----iIdtg~T-----l~~aA~~Lk~~GA~~V~~~aTHgvf--s~~A~~~l~~ 133 (184)
T PF14572_consen 83 GKICIIVDD-----IIDTGGT-----LIKAAELLKERGAKKVYACATHGVF--SGDAPERLEE 133 (184)
T ss_dssp TSEEEEEEE-----EESSTHH-----HHHHHHHHHHTTESEEEEEEEEE-----TTHHHHHHH
T ss_pred CCeEeeecc-----cccchHH-----HHHHHHHHHHcCCCEEEEEEeCccc--CchHHHHHhh
Confidence 445555544 6777653 3334556666676556999999875 5555544444
No 58
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=57.62 E-value=21 Score=29.17 Aligned_cols=53 Identities=23% Similarity=0.296 Sum_probs=37.0
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.++.++++||+-..-+......+.+.+.........|++||.- + .-.+.+..+
T Consensus 111 ~~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~-~--~ll~ti~SR 163 (325)
T PRK08699 111 RGGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAA-D--KVLPTIKSR 163 (325)
T ss_pred cCCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCCh-H--hChHHHHHH
Confidence 3567789999987776777888888888765567788888843 2 223445555
No 59
>PRK02269 ribose-phosphate pyrophosphokinase; Provisional
Probab=50.09 E-value=25 Score=28.66 Aligned_cols=32 Identities=16% Similarity=0.080 Sum_probs=22.2
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
+||+|.. +....+.+.+.|..--++++||.=.
T Consensus 226 IidTG~T-----l~~aa~~Lk~~GA~~V~~~~tHglf 257 (320)
T PRK02269 226 MIDTAGT-----ICHAADALAEAGATEVYASCTHPVL 257 (320)
T ss_pred ecCcHHH-----HHHHHHHHHHCCCCEEEEEEECccc
Confidence 5556654 4566777777777667999999653
No 60
>PRK07199 phosphoribosylpyrophosphate synthetase; Provisional
Probab=46.51 E-value=24 Score=28.48 Aligned_cols=31 Identities=16% Similarity=0.218 Sum_probs=21.3
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccC
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWH 79 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H 79 (216)
+||+|.. +....+.+++.|..--+++.||.=
T Consensus 220 IidTG~T-----l~~aa~~Lk~~GA~~V~~~~tHgv 250 (301)
T PRK07199 220 IVSTGRT-----LIEAARQLRAAGAASPDCVVVHAL 250 (301)
T ss_pred ccCcHHH-----HHHHHHHHHHCCCcEEEEEEEeee
Confidence 4555543 455667777777767799999963
No 61
>PRK04923 ribose-phosphate pyrophosphokinase; Provisional
Probab=45.74 E-value=31 Score=28.15 Aligned_cols=32 Identities=16% Similarity=0.077 Sum_probs=22.3
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
+||+|.. +....+.+.+.|..-.++++||.-.
T Consensus 226 IidTG~T-----l~~aa~~Lk~~GA~~V~~~~THgvf 257 (319)
T PRK04923 226 LVDTAGT-----LCAAAAALKQRGALKVVAYITHPVL 257 (319)
T ss_pred ccCchHH-----HHHHHHHHHHCCCCEEEEEEECccc
Confidence 4556643 4556677777777667999999775
No 62
>PLN02297 ribose-phosphate pyrophosphokinase
Probab=44.31 E-value=28 Score=28.53 Aligned_cols=31 Identities=16% Similarity=0.234 Sum_probs=22.2
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccC
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWH 79 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H 79 (216)
+||+|.. +....+.+...|...-++++||.=
T Consensus 239 IidTG~T-----l~~aa~~L~~~Ga~~V~~~~THgl 269 (326)
T PLN02297 239 LVQSGGT-----LIECQKVLAAHGAAKVSAYVTHGV 269 (326)
T ss_pred ccCcHHH-----HHHHHHHHHHCCCcEEEEEEECcc
Confidence 4555543 566677778778777899999965
No 63
>COG0052 RpsB Ribosomal protein S2 [Translation, ribosomal structure and biogenesis]
Probab=43.79 E-value=38 Score=26.46 Aligned_cols=40 Identities=18% Similarity=0.152 Sum_probs=30.8
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccC
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVG 84 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~g 84 (216)
++-.+++||... ........+.+.+|-+++=|.+.+|.+.
T Consensus 157 Pd~l~ViDp~~e------~iAv~EA~klgIPVvAlvDTn~dpd~VD 196 (252)
T COG0052 157 PDVLFVIDPRKE------KIAVKEANKLGIPVVALVDTNCDPDGVD 196 (252)
T ss_pred CCEEEEeCCcHh------HHHHHHHHHcCCCEEEEecCCCCCccCc
Confidence 667889999765 3334444666889999999999999875
No 64
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=43.20 E-value=31 Score=25.82 Aligned_cols=49 Identities=27% Similarity=0.340 Sum_probs=26.2
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHc--CCCCeEEcCCCccccCc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRS--LKPDIIYPAHGPVVEVG 208 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~--~~~~~v~pgHg~~~~~~ 208 (216)
.-++++||++-. ..........+.+.++++.+ .+.-.+...|.......
T Consensus 43 d~i~~~GD~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~GNHD~~~~~~ 93 (223)
T cd00840 43 DFVLIAGDLFDS-NNPSPEALELLIEALRRLKEAGIPVFIIAGNHDSPSRLG 93 (223)
T ss_pred CEEEECCcccCC-CCCCHHHHHHHHHHHHHHHHCCCCEEEecCCCCCccccc
Confidence 358899996443 22222223455556666542 23335666777666443
No 65
>PF09370 TIM-br_sig_trns: TIM-barrel signal transduction protein; InterPro: IPR009215 Members of this family are predicted to have a TIM barrel fold, based on PSI-BLAST analysis (iteration 4) and on SCOP prediction (using SMART). Interestingly, this novel domain also exists as an N-terminal domain of sigma54-dependent transcriptional activators (enhancer-binding proteins). Because sigma54 dependent activators typically have a three-domain structure: the variable N-terminal regulatory (activation) domain involved in signal recognition/receiving, the central AAA-type ATPase domain, and the DNA-binding domain (see PIRSF003187 from PIRSF, PIRSF005263 from PIRSF, PIRSF003184 from PIRSF, PIRSF005263 from PIRSF, IPR014443 from INTERPRO for details), the proteins of the current entry may be predicted to play a role in signal recognition/receiving and signal transduction.; PDB: 2P10_C.
Probab=41.92 E-value=15 Score=29.04 Aligned_cols=29 Identities=24% Similarity=0.392 Sum_probs=20.7
Q ss_pred HHHHHcCCCCeEEcCCCccccCccccccC
Q psy1547 186 LRRIRSLKPDIIYPAHGPVVEVGLSFSLM 214 (216)
Q Consensus 186 l~~l~~~~~~~v~pgHg~~~~~~~~~~~~ 214 (216)
.+...+.++|.++..||.|+..++..+|+
T Consensus 205 ~~aa~~v~~dii~l~hGGPI~~p~D~~~~ 233 (268)
T PF09370_consen 205 FDAARAVNPDIIVLCHGGPIATPEDAQYV 233 (268)
T ss_dssp HHHHHCC-TT-EEEEECTTB-SHHHHHHH
T ss_pred HHHHHHhCCCeEEEEeCCCCCCHHHHHHH
Confidence 34455689999999999999999887664
No 66
>PRK00553 ribose-phosphate pyrophosphokinase; Provisional
Probab=41.32 E-value=35 Score=28.03 Aligned_cols=41 Identities=12% Similarity=0.050 Sum_probs=24.8
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
++.+++||=--.... .+....+.+.+.|..-.+++.||+-.
T Consensus 218 Gk~VIIVDDIi~TG~-Tl~~aa~~Lk~~GA~~V~~~atHglf 258 (332)
T PRK00553 218 NKNCLIVDDMIDTGG-TVIAAAKLLKKQKAKKVCVMATHGLF 258 (332)
T ss_pred CCEEEEEeccccchH-HHHHHHHHHHHcCCcEEEEEEEeeec
Confidence 334555554333222 24555666777777777999999753
No 67
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=40.75 E-value=47 Score=27.19 Aligned_cols=54 Identities=19% Similarity=0.139 Sum_probs=38.1
Q ss_pred EecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 36 LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 36 i~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.+++.++++||....-..+....+++.+...+.....|++||.- ..=++.+..+
T Consensus 103 ~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~---~~ll~TI~SR 156 (328)
T PRK05707 103 QLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQP---SRLLPTIKSR 156 (328)
T ss_pred ccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECCh---hhCcHHHHhh
Confidence 34567788998877666667788888888876677788888742 2234566666
No 68
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=40.59 E-value=39 Score=27.57 Aligned_cols=52 Identities=12% Similarity=0.005 Sum_probs=37.7
Q ss_pred cCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 38 TGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 38 ~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
++.++++||....-..+....+++.+...+.....|++||. ++. =++.++.+
T Consensus 112 g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~-~~~--lLpTIrSR 163 (319)
T PRK08769 112 GIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQ-PAR--LPATIRSR 163 (319)
T ss_pred CCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECC-hhh--CchHHHhh
Confidence 45679999988766666788899999887777778888763 322 24667777
No 69
>PRK10098 putative dehydrogenase; Provisional
Probab=40.17 E-value=1.2e+02 Score=25.07 Aligned_cols=57 Identities=16% Similarity=0.120 Sum_probs=39.4
Q ss_pred EEEEecCCceEEEecCCCCChh----HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc
Q psy1547 33 TYILGTGSRRLLLDTGEPDHME----YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI 93 (216)
Q Consensus 33 ~~li~~~~~~iliD~g~~~~~~----~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~ 93 (216)
.-+++....+++||+.+....- ..+...+..++.| |-.|.+.|+| |+|.+.++..+.
T Consensus 71 ~~v~~~~~a~~~vDg~~g~G~~a~~~Am~~aie~Ar~~G--i~~v~vrnS~--H~G~~g~y~~~a 131 (350)
T PRK10098 71 AKIVKDAGAVLTLDGDRGFGQVVAHEAMALGIERARQHG--ICAVALRNSH--HIGRIGHWAEQC 131 (350)
T ss_pred eEEEecCCcEEEEECCCCccHHHHHHHHHHHHHHHHHhC--EEEEEEecCC--CccchHHHHHHH
Confidence 4456667778999998766432 3344445545444 7888888876 999999887764
No 70
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=40.04 E-value=55 Score=23.57 Aligned_cols=40 Identities=13% Similarity=0.175 Sum_probs=29.4
Q ss_pred cCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecc
Q psy1547 38 TGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSH 77 (216)
Q Consensus 38 ~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH 77 (216)
.+.++++||-...-..+....+++.|...+....+|++|.
T Consensus 101 ~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~t~ 140 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILITN 140 (162)
T ss_dssp SSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEEES
T ss_pred CCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEEEC
Confidence 3566788877766556677888888888777787888876
No 71
>COG2974 RdgC DNA recombination-dependent growth factor C [DNA replication, recombination, and repair]
Probab=37.92 E-value=35 Score=27.04 Aligned_cols=47 Identities=15% Similarity=0.228 Sum_probs=31.5
Q ss_pred CCCccCCCCceEEEEecCCceEEEecCCCCChh-HHHHHHHHHhhCCC
Q psy1547 22 NPGPMTLQGTNTYILGTGSRRLLLDTGEPDHME-YIENLKQVLNKESI 68 (216)
Q Consensus 22 ~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~-~~~~~~~~l~~~~~ 68 (216)
.|..+..++.....|.+.++.|+||+....-.+ .+..+.+.++..+.
T Consensus 115 LPRAFsr~s~T~~~idt~~gli~VDaAS~kkAEdvl~lLRksLGsLPv 162 (303)
T COG2974 115 LPRAFSRSSQTFAWIDTRNGLILVDAASSKKAEDVLALLRKSLGSLPV 162 (303)
T ss_pred hhHhhhhhcceeeEEeccCCEEEEchhhhhhHHHHHHHHHHHhCCCcc
Confidence 444444445556668889999999998865433 56666777775543
No 72
>COG0462 PrsA Phosphoribosylpyrophosphate synthetase [Nucleotide transport and metabolism / Amino acid transport and metabolism]
Probab=37.83 E-value=60 Score=26.42 Aligned_cols=41 Identities=20% Similarity=0.275 Sum_probs=26.0
Q ss_pred CceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 30 ~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
+-+|+++.+ +||||.. +-...+.|.+.|-.=.++.+||.=.
T Consensus 214 gk~~iiVDD-----iIdTgGT-----i~~Aa~~Lk~~GAk~V~a~~tH~vf 254 (314)
T COG0462 214 GKDVVIVDD-----IIDTGGT-----IAKAAKALKERGAKKVYAAATHGVF 254 (314)
T ss_pred CCEEEEEec-----cccccHH-----HHHHHHHHHHCCCCeEEEEEEchhh
Confidence 455666644 6777765 3334556666666555999999764
No 73
>cd08166 MPP_Cdc1_like_1 uncharacterized subgroup related to Saccharomyces cerevisiae CDC1, metallophosphatase domain. A functionally uncharacterized subgroup related to the metallophosphatase domain of Saccharomyces cerevisiae Cdc1, S. cerevisiae Ted1 and human MPPE1. Cdc1 is an endoplasmic reticulum-localized transmembrane lipid phosphatase and is a subunit of DNA polymerase delta. TED1 (trafficking of Emp24p/Erv25p-dependent cargo disrupted 1), acts together with Emp24p and Erv25p in cargo exit from the ER. The MPPE1 gene is a candidate susceptibility gene for Bipolar disorder. Proteins in this uncharacterized subgroup belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like R
Probab=36.86 E-value=69 Score=24.13 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=18.2
Q ss_pred CCcEEEEcceecCCCccccccHHHHHHHHHHHHc
Q psy1547 158 EENVVFSGDTILGEGTTVFSDLISYIESLRRIRS 191 (216)
Q Consensus 158 ~~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~ 191 (216)
.+-++|+||++-.+.. .+..++.+.++++.+
T Consensus 43 PD~Vi~lGDL~D~G~~---~~~~e~~e~l~Rf~~ 73 (195)
T cd08166 43 PDIVIFLGDLMDEGSI---ANDDEYYSYVQRFIN 73 (195)
T ss_pred CCEEEEeccccCCCCC---CCHHHHHHHHHHHHH
Confidence 4678999996544332 234456665555554
No 74
>PRK02458 ribose-phosphate pyrophosphokinase; Provisional
Probab=35.05 E-value=50 Score=27.02 Aligned_cols=32 Identities=22% Similarity=0.286 Sum_probs=21.3
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
+||+|.. +....+.+.+.|-.=-++++||+-.
T Consensus 227 IidTG~T-----l~~aa~~Lk~~GA~~V~~~~tHgif 258 (323)
T PRK02458 227 ILNTGKT-----FAEAAKIVEREGATEIYAVASHGLF 258 (323)
T ss_pred eeCcHHH-----HHHHHHHHHhCCCCcEEEEEEChhc
Confidence 5556543 4556666776676555889999864
No 75
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=33.98 E-value=1.1e+02 Score=26.22 Aligned_cols=49 Identities=12% Similarity=0.182 Sum_probs=30.8
Q ss_pred CCceEEEecCCCCChh-HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 39 GSRRLLLDTGEPDHME-YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~-~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
++-.+++|+..+-+.. ..+.+.+. .+|..|++|-.+.|-=||...=...
T Consensus 214 ~E~llVvDam~GQdA~~~A~aF~e~-----l~itGvIlTKlDGdaRGGaALS~~~ 263 (451)
T COG0541 214 DETLLVVDAMIGQDAVNTAKAFNEA-----LGITGVILTKLDGDARGGAALSARA 263 (451)
T ss_pred CeEEEEEecccchHHHHHHHHHhhh-----cCCceEEEEcccCCCcchHHHhhHH
Confidence 3345788887763221 22222222 2589999999999988887754444
No 76
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=33.92 E-value=62 Score=26.44 Aligned_cols=53 Identities=13% Similarity=0.165 Sum_probs=38.2
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.++.++++||....-..+....+++.+...+...-.|++|+.- ..=++.+..|
T Consensus 106 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~---~~lLpTI~SR 158 (319)
T PRK06090 106 LNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQ---KRLLPTIVSR 158 (319)
T ss_pred cCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh---hhChHHHHhc
Confidence 4567789998877665667788899998877778788888742 2234566666
No 77
>PRK15025 ureidoglycolate dehydrogenase; Provisional
Probab=33.40 E-value=1.9e+02 Score=24.03 Aligned_cols=56 Identities=13% Similarity=0.170 Sum_probs=38.0
Q ss_pred EEEecCCceEEEecCCCCChh----HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc
Q psy1547 34 YILGTGSRRLLLDTGEPDHME----YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI 93 (216)
Q Consensus 34 ~li~~~~~~iliD~g~~~~~~----~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~ 93 (216)
-+++....+.+||+.+....- ..+...+..++.| |-.|.+.++| |+|.+.++....
T Consensus 68 ~i~~~~~a~a~vDg~~g~G~~a~~~Am~~aiekA~~~G--i~~v~vrnS~--H~G~~g~y~~~a 127 (349)
T PRK15025 68 RFEETGPCSAILHADNAAGQVAAKMGMEHAIETAKQNG--VAVVGISRMG--HSGAISYFVQQA 127 (349)
T ss_pred EEEEecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhC--EEEEEEeCCC--ccccHHHHHHHH
Confidence 345556678899998776432 3344455555444 7788888866 999999887763
No 78
>cd07400 MPP_YydB Bacillus subtilis YydB and related proteins, metallophosphatase domain. YydB (BSU40220) is an uncharacterized Bacillus subtilis protein that belongs to the following Bacillus subtilis gene cluster yydB-yydC-yydD-yydG-yydH-yydI-yydJ. YydB belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productiv
Probab=32.91 E-value=80 Score=21.75 Aligned_cols=12 Identities=33% Similarity=0.440 Sum_probs=9.0
Q ss_pred CcEEEEcceecC
Q psy1547 159 ENVVFSGDTILG 170 (216)
Q Consensus 159 ~~vl~~GD~~~~ 170 (216)
+-++++||++..
T Consensus 37 d~vi~~GDl~~~ 48 (144)
T cd07400 37 DLVVITGDLTQR 48 (144)
T ss_pred CEEEECCCCCCC
Confidence 568999996544
No 79
>cd00839 MPP_PAPs purple acid phosphatases of the metallophosphatase superfamily, metallophosphatase domain. Purple acid phosphatases (PAPs) belong to a diverse family of binuclear metallohydrolases that have been identified and characterized in plants, animals, and fungi. PAPs contain a binuclear metal center and their characteristic pink or purple color derives from a charge-transfer transition between a tyrosine residue and a chromophoric ferric ion within the binuclear center. PAPs catalyze the hydrolysis of a wide range of activated phosphoric acid mono- and di-esters and anhydrides. PAPs are distinguished from the other phosphatases by their insensitivity to L-(+) tartrate inhibition and are therefore also known as tartrate resistant acid phosphatases (TRAPs). While only a few copies of PAP-like genes are present in mammalian and fungal genomes, multiple copies are present in plant genomes. PAPs belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diver
Probab=32.71 E-value=60 Score=25.64 Aligned_cols=46 Identities=13% Similarity=0.173 Sum_probs=27.4
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcC-CCCeEEcCCCcc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSL-KPDIIYPAHGPV 204 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~-~~~~v~pgHg~~ 204 (216)
.-++++||+..............+.+.++.+... +.-.+...|...
T Consensus 35 d~vl~~GDl~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~GNHD~~ 81 (294)
T cd00839 35 DAILHVGDLAYADGYNNGSRWDTFMRQIEPLASYVPYMVTPGNHEAD 81 (294)
T ss_pred cEEEEcCchhhhcCCccchhHHHHHHHHHHHHhcCCcEEcCcccccc
Confidence 4588999976554443334456677777766443 333566667543
No 80
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=31.66 E-value=64 Score=17.46 Aligned_cols=25 Identities=20% Similarity=0.384 Sum_probs=17.6
Q ss_pred ccHHHHHHHHHHHHcCCCCeEEcCCCcc
Q psy1547 177 SDLISYIESLRRIRSLKPDIIYPAHGPV 204 (216)
Q Consensus 177 ~~~~~~~~~l~~l~~~~~~~v~pgHg~~ 204 (216)
+|.++...-++.+ +++.+++-||.+
T Consensus 18 ad~~~L~~~i~~~---~p~~vilVHGe~ 42 (43)
T PF07521_consen 18 ADREELLEFIEQL---NPRKVILVHGEP 42 (43)
T ss_dssp -BHHHHHHHHHHH---CSSEEEEESSEH
T ss_pred CCHHHHHHHHHhc---CCCEEEEecCCC
Confidence 5666666666665 569999999864
No 81
>TIGR00040 yfcE phosphoesterase, MJ0936 family. Members of this largely uncharacterized family share a motif approximating DXH(X25)GDXXD(X25)GNHD as found in several phosphoesterases, including the nucleases SbcD and Mre11, and a family of uncharacterized archaeal putative phosphoesterases described by TIGR00024. In this family, the His residue in GNHD portion of the motif is not conserved. The member MJ0936, one of two from Methanococcus jannaschii, was shown (PubMed:15128743) to act on model phosphodiesterase substrates; a divalent cation was required.
Probab=31.48 E-value=1.9e+02 Score=20.39 Aligned_cols=13 Identities=15% Similarity=0.417 Sum_probs=9.1
Q ss_pred CccEEEecccCcc
Q psy1547 69 SLEHIVLSHWHND 81 (216)
Q Consensus 69 ~i~~v~~TH~H~D 81 (216)
+.++|++-|.|.-
T Consensus 106 ~~d~vi~GHtH~~ 118 (158)
T TIGR00040 106 GVDVLIFGHTHIP 118 (158)
T ss_pred CCCEEEECCCCCC
Confidence 4677888887753
No 82
>cd07409 MPP_CD73_N CD73 ecto-5'-nucleotidase and related proteins, N-terminal metallophosphatase domain. CD73 is a mammalian ecto-5'-nucleotidase expressed in endothelial cells and lymphocytes that catalyzes the conversion of 5'-AMP to adenosine in the final step of a pathway that generates adenosine from ATP. This pathway also includes a CD39 nucleoside triphosphate dephosphorylase that mediates the dephosphorylation of ATP to ADP and then to 5'-AMP. These enzymes all have an N-terminal metallophosphatase domain and a C-terminal 5'nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active si
Probab=31.25 E-value=2.7e+02 Score=22.07 Aligned_cols=60 Identities=12% Similarity=0.174 Sum_probs=32.1
Q ss_pred CCceEEEecCCCCChhH------HHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEec
Q psy1547 39 GSRRLLLDTGEPDHMEY------IENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWK 102 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~------~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~ 102 (216)
...++++|+|....... -+...+.+... .+|+..+... |.-.|...+.+.+.....++.+
T Consensus 48 ~~~~l~ld~GD~~~gs~~~~~~~g~~~~~~ln~~--g~D~~~lGNH--efd~G~~~l~~~~~~~~~p~l~ 113 (281)
T cd07409 48 NPNVLFLNAGDAFQGTLWYTLYKGNADAEFMNLL--GYDAMTLGNH--EFDDGVEGLAPFLNNLKFPVLS 113 (281)
T ss_pred CCCEEEEeCCCCCCCcchhhhcCChHHHHHHHhc--CCCEEEeccc--cccCCHHHHHHHHHhCCCCEEE
Confidence 34578888885432211 12334445533 3677777643 4456777777665433344443
No 83
>TIGR03175 AllD ureidoglycolate dehydrogenase. This enzyme converts ureidoglycolate to oxalureate in the non-urea-forming catabolism of allantoin (GenProp0687). The pathway has been characterized in E. coli and is observed in the genomes of Entercoccus faecalis and Bacillus licheniformis.
Probab=31.25 E-value=2.1e+02 Score=23.71 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=37.8
Q ss_pred EEEecCCceEEEecCCCCChh----HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc
Q psy1547 34 YILGTGSRRLLLDTGEPDHME----YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI 93 (216)
Q Consensus 34 ~li~~~~~~iliD~g~~~~~~----~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~ 93 (216)
-++......++||+.+...+- ..+...+..++.| |-.|.+.++| |+|.+.++....
T Consensus 68 ~i~~e~~a~a~vDg~~g~G~~a~~~Am~~aiekAr~~G--i~~v~v~ns~--H~G~~g~Y~~~a 127 (349)
T TIGR03175 68 RFENTGPCTAIFHGDNGAGQVAAKMAMEHAIEIAKKSG--VAVVGISRMS--HSGALSYFVRQA 127 (349)
T ss_pred EEEEecCcEEEEECCCCchHHHHHHHHHHHHHHHHHhC--EEEEEecCCC--ccccHHHHHHHH
Confidence 345556778999998766432 3344444444444 7788888866 999999887763
No 84
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=31.21 E-value=2.6e+02 Score=22.81 Aligned_cols=68 Identities=19% Similarity=0.082 Sum_probs=48.6
Q ss_pred ccccceEEeccCCCCccCCCCceEEEEecCC--ceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccC
Q psy1547 10 QLSSRVIRVLGMNPGPMTLQGTNTYILGTGS--RRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVG 84 (216)
Q Consensus 10 ~v~~~v~~v~~~~~~~~~~~~~n~~li~~~~--~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~g 84 (216)
.+....++|.+.. ..|..+...++ ..=+-++|....++..+.+.+.+.+.-.+-|.|+++=+=|=.+.
T Consensus 75 gi~~~fv~v~g~T-------Rinvki~~~~~~~~Tein~~Gp~is~~~~~~~l~~~~~~l~~~d~VvlsGSlP~g~~ 144 (310)
T COG1105 75 GIPDAFVEVKGDT-------RINVKILDEEDGEETEINFPGPEISEAELEQFLEQLKALLESDDIVVLSGSLPPGVP 144 (310)
T ss_pred CCCceEEEccCCC-------eeeEEEEecCCCcEEEecCCCCCCCHHHHHHHHHHHHHhcccCCEEEEeCCCCCCCC
Confidence 3667777776542 25666666644 67788999988887788888888875667888999876654444
No 85
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=30.91 E-value=77 Score=25.97 Aligned_cols=54 Identities=11% Similarity=0.123 Sum_probs=37.4
Q ss_pred EecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 36 LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 36 i~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.+++.++++||....-..+....+++.+...+...-.+++|+.- ..=++.+..|
T Consensus 104 ~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~---~~llpTI~SR 157 (325)
T PRK06871 104 QQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLS---AALLPTIYSR 157 (325)
T ss_pred ccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECCh---HhCchHHHhh
Confidence 34567788898877666667788889988877777788887732 1223455555
No 86
>PRK13260 2,3-diketo-L-gulonate reductase; Provisional
Probab=30.46 E-value=1.9e+02 Score=23.75 Aligned_cols=57 Identities=5% Similarity=-0.133 Sum_probs=38.7
Q ss_pred EEEEecCCceEEEecCCCCChh----HHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhc
Q psy1547 33 TYILGTGSRRLLLDTGEPDHME----YIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI 93 (216)
Q Consensus 33 ~~li~~~~~~iliD~g~~~~~~----~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~ 93 (216)
.-++.....++++|......+- ..+...+..++.| +-.|.+.++| |+|.+.++..+.
T Consensus 67 ~~v~~~~~a~a~~Dg~~g~G~~~~~~am~~aiekAr~~G--i~~v~vrns~--H~G~~g~y~~~a 127 (332)
T PRK13260 67 PQRVTSLGAIEQWDAQRAIGNLTAKKMMDRAIELARDHG--IGLVALRNAN--HWMRGGSYGWQA 127 (332)
T ss_pred eEEEecCCcEEEEECCCCchHHHHHHHHHHHHHHHHHhC--EEEEEEcCCC--chhhHHHHHHHH
Confidence 3456667788999998766432 3344444445444 7888888866 999999887763
No 87
>COG1869 RbsD ABC-type ribose transport system, auxiliary component [Carbohydrate transport and metabolism]
Probab=29.90 E-value=1.4e+02 Score=20.90 Aligned_cols=19 Identities=21% Similarity=0.136 Sum_probs=11.1
Q ss_pred HHHHhhCCCCccEEEeccc
Q psy1547 60 KQVLNKESISLEHIVLSHW 78 (216)
Q Consensus 60 ~~~l~~~~~~i~~v~~TH~ 78 (216)
...+.+.+.++...++||-
T Consensus 85 ~~~~~~~~~~iei~~~sHE 103 (135)
T COG1869 85 LTLLTQLGNQIEIQYVSHE 103 (135)
T ss_pred HHHHHhcCCCceEEecCHH
Confidence 3334444556777777774
No 88
>PTZ00145 phosphoribosylpyrophosphate synthetase; Provisional
Probab=29.52 E-value=68 Score=27.48 Aligned_cols=32 Identities=16% Similarity=0.125 Sum_probs=21.9
Q ss_pred EEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 44 LLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 44 liD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
+||+|.. +....+.|.+.|..--++++||+-.
T Consensus 344 IIdTG~T-----l~~aa~~Lk~~GA~~V~~~~THglf 375 (439)
T PTZ00145 344 MIDTSGT-----LCEAAKQLKKHGARRVFAFATHGLF 375 (439)
T ss_pred eeCcHHH-----HHHHHHHHHHcCCCEEEEEEEcccC
Confidence 5566643 4556667777676556999999875
No 89
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=29.40 E-value=94 Score=25.27 Aligned_cols=53 Identities=13% Similarity=0.179 Sum_probs=37.4
Q ss_pred EecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 36 LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 36 i~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
..++.++++||....-.......+++.+...+ +...|++|+ +++ .=++.+..+
T Consensus 121 ~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp-~~~fILi~~-~~~--~Ll~TI~SR 173 (314)
T PRK07399 121 LEAPRKVVVIEDAETMNEAAANALLKTLEEPG-NGTLILIAP-SPE--SLLPTIVSR 173 (314)
T ss_pred ccCCceEEEEEchhhcCHHHHHHHHHHHhCCC-CCeEEEEEC-ChH--hCcHHHHhh
Confidence 34677899999976555556788999998877 556788887 443 334556666
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=29.29 E-value=98 Score=25.63 Aligned_cols=53 Identities=15% Similarity=0.210 Sum_probs=37.3
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.++.++++||.-..-.......+++.+...+.....|++||. ++-. ++.+..+
T Consensus 139 ~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~~fiLit~~-~~~l--lptIrSR 191 (351)
T PRK09112 139 DGNWRIVIIDPADDMNRNAANAILKTLEEPPARALFILISHS-SGRL--LPTIRSR 191 (351)
T ss_pred cCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCceEEEEECC-hhhc--cHHHHhh
Confidence 456678999998766666677888888876667778888864 3322 3556555
No 91
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=29.18 E-value=69 Score=25.02 Aligned_cols=46 Identities=11% Similarity=0.148 Sum_probs=25.1
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCC-CC--eEEcCCCccc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLK-PD--IIYPAHGPVV 205 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~-~~--~v~pgHg~~~ 205 (216)
+-++++||++- ...+.......+.+.++++.+.. .. .+...|+...
T Consensus 41 D~lli~GDi~d-~~~p~~~~~~~~~~~l~~l~~~~~i~v~~i~GNHD~~~ 89 (253)
T TIGR00619 41 DALLVAGDVFD-TANPPAEAQELFNAFFRNLSDANPIPIVVISGNHDSAQ 89 (253)
T ss_pred CEEEECCccCC-CCCCCHHHHHHHHHHHHHHHhcCCceEEEEccCCCChh
Confidence 45889999543 33222222233455666666544 33 5566687754
No 92
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=29.18 E-value=92 Score=25.72 Aligned_cols=53 Identities=19% Similarity=0.245 Sum_probs=38.4
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
+++.++++||....-..+....+++.+...+.....|++|+. ++.. .+.+..+
T Consensus 130 ~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~-~~~L--LpTI~SR 182 (342)
T PRK06964 130 RGGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSAR-IDRL--LPTILSR 182 (342)
T ss_pred cCCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECC-hhhC--cHHHHhc
Confidence 456778899987766666788899999987777888888874 3332 3456666
No 93
>PLN00105 malate/L-lactate dehydrogenase; Provisional
Probab=28.86 E-value=2.5e+02 Score=23.09 Aligned_cols=56 Identities=11% Similarity=0.023 Sum_probs=37.2
Q ss_pred EEEecCCceEEEecCCCCChh----HHHHHHHHHhhCCCCccEEEecc-cCccccCChHHHHhhc
Q psy1547 34 YILGTGSRRLLLDTGEPDHME----YIENLKQVLNKESISLEHIVLSH-WHNDHVGGLKDIFEHI 93 (216)
Q Consensus 34 ~li~~~~~~iliD~g~~~~~~----~~~~~~~~l~~~~~~i~~v~~TH-~H~DH~gg~~~~~~~~ 93 (216)
-++.....+++||+.....+- ..+...+..++.| |-.|.+.+ +| |+|-+.++..+.
T Consensus 57 ~v~~~~~a~a~vDg~~g~G~~~~~~am~~aiekAr~~G--i~~v~vrn~S~--H~G~~g~y~~~a 117 (330)
T PLN00105 57 TIEHETKTSAAVDGNKNAGMLVLHHAMDMAIDKAKTHG--VGIVGTCNTST--STGALGYYAEKV 117 (330)
T ss_pred eEEecCCcEEEEECCCCccHHHHHHHHHHHHHHHHHhC--EEEEEEeCCcC--CccchHHHHHHH
Confidence 356666778899998765432 3344455555444 67777777 66 899998887763
No 94
>PRK00129 upp uracil phosphoribosyltransferase; Reviewed
Probab=28.84 E-value=1.8e+02 Score=21.94 Aligned_cols=62 Identities=15% Similarity=0.096 Sum_probs=37.3
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHhhCCC-CccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESI-SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~~~~~-~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
+..++|+|+--.... .+....+.+...|. +|..+.+ ...-.|+..+.+++|. +++|...-+.
T Consensus 124 ~~~VllvDd~laTG~-Tl~~ai~~L~~~G~~~I~~~~l----l~~~~gl~~l~~~~p~--v~i~~~~iD~ 186 (209)
T PRK00129 124 ERTVIVVDPMLATGG-SAIAAIDLLKKRGAKNIKVLCL----VAAPEGIKALEEAHPD--VEIYTAAIDE 186 (209)
T ss_pred CCEEEEECCcccchH-HHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCC--cEEEEEeecC
Confidence 456888887655433 23444555555443 4544443 3445688889889885 7777755443
No 95
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=28.82 E-value=1.2e+02 Score=23.14 Aligned_cols=51 Identities=10% Similarity=0.123 Sum_probs=34.1
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCCeEEcCCCccccCccccccC
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVVEVGLSFSLM 214 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~pgHg~~~~~~~~~~~~ 214 (216)
-.++..||.++.... -...+..+.++..-+..+++..|+++.--.+.+.++
T Consensus 143 ~Dl~LagDlfy~~~~-----a~~l~~~~~~l~~~g~~vlvgdp~R~~lpk~~l~~~ 193 (218)
T COG3897 143 FDLLLAGDLFYNHTE-----ADRLIPWKDRLAEAGAAVLVGDPGRAYLPKKRLEFL 193 (218)
T ss_pred eeEEEeeceecCchH-----HHHHHHHHHHHHhCCCEEEEeCCCCCCCchhhhhhh
Confidence 367889997765221 234455566667777888999999887666655543
No 96
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=28.48 E-value=77 Score=26.01 Aligned_cols=54 Identities=9% Similarity=-0.052 Sum_probs=38.4
Q ss_pred EecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 36 LGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 36 i~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
.+++.++++||.-..-..+....++|.+...+...-.|++|+.- ..=++.+..|
T Consensus 105 ~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~---~~lLpTIrSR 158 (334)
T PRK07993 105 RLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREP---ARLLATLRSR 158 (334)
T ss_pred ccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECCh---hhChHHHHhc
Confidence 45677899999876655667788999999877777788888742 2224456666
No 97
>TIGR01091 upp uracil phosphoribosyltransferase. that includes uracil phosphoribosyltransferase, uridine kinases, and other, uncharacterized proteins.
Probab=28.09 E-value=1.6e+02 Score=22.21 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=37.3
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHhhCCC-CccEEEecccCccccCChHHHHhhcCCCcceEeccCCCC
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESI-SLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTE 107 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~~~~~-~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~~~~~~ 107 (216)
+..++|+|+.-.... .+....+.+.+.+. +|..+.+ ..--.|+..+.+.||. +++|...-+.
T Consensus 122 ~~~VllvDd~laTG~-Tl~~ai~~L~~~G~~~I~v~~l----l~~~~gl~~l~~~~p~--v~i~~~~id~ 184 (207)
T TIGR01091 122 ERTVIVLDPMLATGG-TMIAALDLLKKRGAKKIKVLSI----VAAPEGIEAVEKAHPD--VDIYTAAIDE 184 (207)
T ss_pred CCEEEEECCCccchH-HHHHHHHHHHHcCCCEEEEEEE----ecCHHHHHHHHHHCCC--CEEEEEEECC
Confidence 456888998765433 24444555555443 4544444 3344678888888885 7777665443
No 98
>COG2101 SPT15 TATA-box binding protein (TBP), component of TFIID and TFIIIB [Transcription]
Probab=27.21 E-value=1.6e+02 Score=21.86 Aligned_cols=33 Identities=12% Similarity=0.260 Sum_probs=24.8
Q ss_pred CCCceEEEECCCcEEEEcceecCCCccccccHHHHHHHHHHHH
Q psy1547 148 TTDHIVLKLEEENVVFSGDTILGEGTTVFSDLISYIESLRRIR 190 (216)
Q Consensus 148 t~~~~~~~~~~~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~ 190 (216)
.|....+.+.++++++||- .+.++..++++++.
T Consensus 51 ePk~a~LIF~SGK~VcTGa----------Ks~ed~~~av~~~~ 83 (185)
T COG2101 51 EPKTAALIFRSGKVVCTGA----------KSVEDVHRAVKKLA 83 (185)
T ss_pred CCcceEEEEecCcEEEecc----------CcHHHHHHHHHHHH
Confidence 3667888888999999998 66676666666554
No 99
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=27.06 E-value=1.1e+02 Score=25.44 Aligned_cols=41 Identities=22% Similarity=0.286 Sum_probs=30.4
Q ss_pred cCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEeccc
Q psy1547 38 TGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHW 78 (216)
Q Consensus 38 ~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~ 78 (216)
++.++++||.-..........+++.+...+.....|++||.
T Consensus 140 ~~~kVviIDead~m~~~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNANAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCHHHHHHHHHHHhcCCCCeEEEEEECC
Confidence 45578999987665566777888888876656678888874
No 100
>PF07796 DUF1638: Protein of unknown function (DUF1638); InterPro: IPR012437 This entry contains sequences covering an approximately 270 amino acid stretch of a group of hypothetical proteins and are confined to Bacteria and Archaea.
Probab=27.05 E-value=1.3e+02 Score=21.80 Aligned_cols=36 Identities=25% Similarity=0.422 Sum_probs=23.3
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccE
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEH 72 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~ 72 (216)
..-+++++||+|.....++.+.+.+.....+.++..
T Consensus 116 ~~y~~~~~Idtg~~~~~~~~~~~~~~a~~~~l~~~~ 151 (166)
T PF07796_consen 116 GHYKRVVLIDTGVYDEEDFEEKVREFAEFLGLPIEE 151 (166)
T ss_pred hCCCeEEEEecccccchHHHHHHHHHHHHhCCCEEE
Confidence 345568999999876665556666665555555543
No 101
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=26.92 E-value=63 Score=23.75 Aligned_cols=137 Identities=13% Similarity=0.153 Sum_probs=72.9
Q ss_pred CCCCCCCccccccceEEeccCCCCccCCCCceEEEEecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 1 MSAKIPNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 1 m~~~~~~~~~v~~~v~~v~~~~~~~~~~~~~n~~li~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
|+.+...+-++.+.||-+ .|......+..++++.-++..|=.|-.... +.+..+...+... .++.+++|..-.
T Consensus 1 ~~~k~~~Pd~~v~tv~~i---~~~~L~~~Gikgvi~DlDNTLv~wd~~~~t--pe~~~W~~e~k~~--gi~v~vvSNn~e 73 (175)
T COG2179 1 MSIKFLQPDKLVETVFDI---TPDILKAHGIKGVILDLDNTLVPWDNPDAT--PELRAWLAELKEA--GIKVVVVSNNKE 73 (175)
T ss_pred CchhhhChhHHHhhHhhC---CHHHHHHcCCcEEEEeccCceecccCCCCC--HHHHHHHHHHHhc--CCEEEEEeCCCH
Confidence 444555566666677776 444444556789999989999988887653 2345555555533 478888887432
Q ss_pred cccCChHHHHhhcCCCcceEeccCCCCcccccccCCCCCCCceeecCCCCeEEECCeeEEEEeCCCCCCCceEEEE
Q psy1547 81 DHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKL 156 (216)
Q Consensus 81 DH~gg~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~i~~~~~pgHt~~~~~~~~ 156 (216)
-- ...+.+++. +..+..+.-..... +......-.+...+++-+||.-++=+- .||-.|..++.+
T Consensus 74 ~R---V~~~~~~l~---v~fi~~A~KP~~~~-----fr~Al~~m~l~~~~vvmVGDqL~TDVl-ggnr~G~~tIlV 137 (175)
T COG2179 74 SR---VARAAEKLG---VPFIYRAKKPFGRA-----FRRALKEMNLPPEEVVMVGDQLFTDVL-GGNRAGMRTILV 137 (175)
T ss_pred HH---HHhhhhhcC---CceeecccCccHHH-----HHHHHHHcCCChhHEEEEcchhhhhhh-cccccCcEEEEE
Confidence 11 122223322 33332221111100 000122234455566666663333222 578888888877
No 102
>cd07406 MPP_CG11883_N Drosophila melanogaster CG11883 and related proteins, N-terminal metallophosphatase domain. CG11883 is an uncharacterized Drosophila melanogaster UshA-like protein with two domains, an N-terminal metallophosphatase domain and a C-terminal nucleotidase domain. The N-terminal metallophosphatase domain belongs to a large superfamily of distantly related metallophosphatases (MPPs) that includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at th
Probab=26.73 E-value=3.1e+02 Score=21.35 Aligned_cols=59 Identities=12% Similarity=0.127 Sum_probs=30.4
Q ss_pred CceEEEecCCCCChhH------HHHHHHHHhhCCCCccEEEecccCccccCChHHHHhhcCCCcceEec
Q psy1547 40 SRRLLLDTGEPDHMEY------IENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWK 102 (216)
Q Consensus 40 ~~~iliD~g~~~~~~~------~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~~~~~~~~i~~ 102 (216)
..++++|+|....... -+...+.+...+ .++.++.. .|--.|...+.+.+.....++.+
T Consensus 38 ~~~l~l~~GD~~~g~~~~~~~~g~~~~~~l~~l~--~d~~~~GN--Hefd~g~~~l~~~~~~~~~~~L~ 102 (257)
T cd07406 38 PNTLVLFSGDVLSPSLLSTATKGKQMVPVLNALG--VDLACFGN--HEFDFGEDQLQKRLGESKFPWLS 102 (257)
T ss_pred CCEEEEECCCccCCccchhhcCCccHHHHHHhcC--CcEEeecc--cccccCHHHHHHHHhhCCCCEEE
Confidence 3467888876443211 123444455333 45665554 34455777777765543344433
No 103
>TIGR00282 metallophosphoesterase, MG_246/BB_0505 family. A member of this family from Mycoplasma Pneumoniae has been crystallized and described as a novel phosphatase.
Probab=26.04 E-value=1.4e+02 Score=23.69 Aligned_cols=11 Identities=27% Similarity=0.338 Sum_probs=6.5
Q ss_pred CccEEEecccC
Q psy1547 69 SLEHIVLSHWH 79 (216)
Q Consensus 69 ~i~~v~~TH~H 79 (216)
.+++|+-||.|
T Consensus 169 ~vsaVvGtHtH 179 (266)
T TIGR00282 169 YVTAVVGTHTH 179 (266)
T ss_pred CccEEEeCCCC
Confidence 45666666655
No 104
>cd07383 MPP_Dcr2 Saccharomyces cerevisiae DCR2 phosphatase and related proteins, metallophosphatase domain. DCR2 phosphatase (Dosage-dependent Cell Cycle Regulator 2) functions together with DCR1 (Gid8) in a common pathway to accelerate initiation of DNA replication in Saccharomyces cerevisiae. Genetic analysis suggests that DCR1 functions upstream of DCR2. DCR2 interacts with and dephosphorylates Sic1, an inhibitor of mitotic cyclin/cyclin-dependent kinase complexes, which may serve to trigger the initiation of cell division. DCR2 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAP
Probab=25.55 E-value=1.2e+02 Score=22.36 Aligned_cols=11 Identities=45% Similarity=0.688 Sum_probs=7.1
Q ss_pred CcEEEEcceec
Q psy1547 159 ENVVFSGDTIL 169 (216)
Q Consensus 159 ~~vl~~GD~~~ 169 (216)
.-++++||++.
T Consensus 43 d~vv~~GDl~~ 53 (199)
T cd07383 43 DLVVLTGDLIT 53 (199)
T ss_pred CEEEECCcccc
Confidence 45777788544
No 105
>PRK11148 cyclic 3',5'-adenosine monophosphate phosphodiesterase; Provisional
Probab=24.73 E-value=1.2e+02 Score=23.78 Aligned_cols=39 Identities=18% Similarity=0.164 Sum_probs=20.9
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCC--eEEcCCCc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPD--IIYPAHGP 203 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~v~pgHg~ 203 (216)
.-++++||++.. .+.+++...++.+.+++.. .+...|+.
T Consensus 57 D~vvitGDl~~~------~~~~~~~~~~~~l~~l~~Pv~~v~GNHD~ 97 (275)
T PRK11148 57 DLIVATGDLAQD------HSSEAYQHFAEGIAPLRKPCVWLPGNHDF 97 (275)
T ss_pred CEEEECCCCCCC------CCHHHHHHHHHHHhhcCCcEEEeCCCCCC
Confidence 357788996442 2234555555555555443 44455664
No 106
>cd07393 MPP_DR1119 Deinococcus radiodurans DR1119 and related proteins, metallophosphatase domain. DR1119 is an uncharacterized Deinococcus radiodurans protein with a metallophosphatase domain. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordinat
Probab=23.99 E-value=1.4e+02 Score=22.86 Aligned_cols=9 Identities=33% Similarity=0.637 Sum_probs=5.0
Q ss_pred CcEEEEcce
Q psy1547 159 ENVVFSGDT 167 (216)
Q Consensus 159 ~~vl~~GD~ 167 (216)
+-++++||+
T Consensus 43 D~viiaGDl 51 (232)
T cd07393 43 DIVLIPGDI 51 (232)
T ss_pred CEEEEcCCC
Confidence 345566664
No 107
>PF10411 DsbC_N: Disulfide bond isomerase protein N-terminus; InterPro: IPR018950 This is the N-terminal domain of the disulphide bond isomerase DsbC. The whole molecule is V-shaped, where each arm is a DsbC monomer of two domains linked by a hinge; and the N-termini of each monomer join to form the dimer interface at the base of the V, so are vital for dimerisation []. DsbC is required for disulphide bond formation and functions as a disulphide bond isomerase during oxidative protein-folding in bacterial periplasm. It also has chaperone activity []. ; PDB: 1EEJ_B 2IYJ_A 1TJD_A 1JZD_B 1JZO_A 1G0T_B 1T3B_A.
Probab=23.62 E-value=1.2e+02 Score=17.48 Aligned_cols=18 Identities=17% Similarity=0.222 Sum_probs=13.0
Q ss_pred ceEEEECCCcEEEEccee
Q psy1547 151 HIVLKLEEENVVFSGDTI 168 (216)
Q Consensus 151 ~~~~~~~~~~vl~~GD~~ 168 (216)
.+.|..++++.++.|+++
T Consensus 34 ~i~Y~~~dg~yli~G~l~ 51 (57)
T PF10411_consen 34 GILYVDEDGRYLIQGQLY 51 (57)
T ss_dssp EEEEEETTSSEEEES-EE
T ss_pred eEEEEcCCCCEEEEeEEE
Confidence 466666788999999964
No 108
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=23.61 E-value=1.3e+02 Score=24.24 Aligned_cols=53 Identities=11% Similarity=0.146 Sum_probs=31.6
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccCChHHHHhh
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEH 92 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~gg~~~~~~~ 92 (216)
++..++++||....-..+....+++.+...+.....|++|+. + -.=++.++.|
T Consensus 102 ~~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~-~--~~lLpTI~SR 154 (290)
T PRK07276 102 EGKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTND-E--NKVLPTIKSR 154 (290)
T ss_pred cCCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECC-h--hhCchHHHHc
Confidence 345567777766554455566777777766655666666653 2 2234555566
No 109
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=23.42 E-value=1.3e+02 Score=27.57 Aligned_cols=42 Identities=7% Similarity=0.029 Sum_probs=31.9
Q ss_pred ecCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEeccc
Q psy1547 37 GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHW 78 (216)
Q Consensus 37 ~~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~ 78 (216)
.+..++++||--..-.....+.+++.|...+..+.+|++|+.
T Consensus 122 ~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 122 AGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred cCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCC
Confidence 345578999987766555677888888877777889999983
No 110
>TIGR01917 gly_red_sel_B glycine reductase, selenoprotein B. Glycine reductase is a complex with two selenoprotein subunits, A and B. This model represents the glycine reductase selenoprotein B. Closely related to it, but excluded from this model, are selenoprotein B subunits of betaine reductase and sarcosine reductase. All contain selenocysteine incorporated during translation at a specific UGA codon.
Probab=23.13 E-value=1.2e+02 Score=25.82 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=24.9
Q ss_pred cEEEEcceecCCCccccccHHHHH-HHHHHHHcCCCCeEEcCC
Q psy1547 160 NVVFSGDTILGEGTTVFSDLISYI-ESLRRIRSLKPDIIYPAH 201 (216)
Q Consensus 160 ~vl~~GD~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~v~pgH 201 (216)
..+++||-+|. .+.++.. ..++.+.++++|+++.|=
T Consensus 48 aTiiCGDnYf~------en~eea~~~i~~mv~k~~pDv~iaGP 84 (431)
T TIGR01917 48 ATVVCGDSFFG------ENLEEAKAKVLEMIKGANPDIFIAGP 84 (431)
T ss_pred EEEEECchhhh------hCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45677885444 5566664 455677789999998874
No 111
>TIGR01918 various_sel_PB selenoprotein B, glycine/betaine/sarcosine/D-proline reductase family. This model represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. This model is built in fragment mode to assist in recognizing fragmentary translations. All members are expected to contain an internal TGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon.
Probab=22.53 E-value=1.3e+02 Score=25.72 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=24.8
Q ss_pred cEEEEcceecCCCccccccHHHHH-HHHHHHHcCCCCeEEcCC
Q psy1547 160 NVVFSGDTILGEGTTVFSDLISYI-ESLRRIRSLKPDIIYPAH 201 (216)
Q Consensus 160 ~vl~~GD~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~v~pgH 201 (216)
..+++||-+|. .+.++.. ..++.+.++++|+++.|=
T Consensus 48 aTiiCGDnYf~------en~eea~~~i~~mv~k~~pDv~iaGP 84 (431)
T TIGR01918 48 HTVVCGDSFFG------ENLEEAVARVLEMLKDKEPDIFIAGP 84 (431)
T ss_pred EEEEECchhhh------hCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45677885544 5566664 455677789999998874
No 112
>COG5564 Predicted TIM-barrel enzyme, possibly a dioxygenase [General function prediction only]
Probab=22.41 E-value=1.1e+02 Score=23.60 Aligned_cols=38 Identities=21% Similarity=0.326 Sum_probs=26.1
Q ss_pred ccHHHHHHHH-HHHHcCCCCeEEcCCCccccCccccccC
Q psy1547 177 SDLISYIESL-RRIRSLKPDIIYPAHGPVVEVGLSFSLM 214 (216)
Q Consensus 177 ~~~~~~~~~l-~~l~~~~~~~v~pgHg~~~~~~~~~~~~ 214 (216)
++..+.++.. +..+.+.-|+++-.||.|++.++..+|.
T Consensus 201 ~~~vel~~~~~~aar~v~kd~i~l~~GGPi~~p~da~yi 239 (276)
T COG5564 201 ADCVELIELAAEAARGVRKDVIPLCHGGPISMPEDARYI 239 (276)
T ss_pred HHHHHHHHHHHHHHhhhhhceeeeccCCCcCCchhhHHH
Confidence 4444444332 3445566789999999999999877764
No 113
>PF02495 7kD_coat: 7kD viral coat protein; InterPro: IPR003411 This family consists of a 7 kDa coat protein from Carlavirus and Potexvirus [].
Probab=22.37 E-value=1.8e+02 Score=17.01 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=16.0
Q ss_pred CCCCceEEEECCCcEEEEcc
Q psy1547 147 HTTDHIVLKLEEENVVFSGD 166 (216)
Q Consensus 147 Ht~~~~~~~~~~~~vl~~GD 166 (216)
..+.+|.+.+.++++.+.|.
T Consensus 22 ~~~~~C~I~ItGeSv~I~gC 41 (59)
T PF02495_consen 22 PSSPSCVIVITGESVTISGC 41 (59)
T ss_pred CCCCCcEEEEeCcEEEEECC
Confidence 34567888888999999886
No 114
>cd06095 RP_RTVL_H_like Retropepsin of the RTVL_H family of human endogenous retrovirus-like elements. This family includes aspartate proteases from retroelements with LTR (long terminal repeats) including the RTVL_H family of human endogenous retrovirus-like elements. While fungal and mammalian pepsins are bilobal proteins with structurally related N- and C-termini, retropepsins are half as long as their fungal and mammalian counterparts. The monomers are structurally related to one lobe of the pepsin molecule and retropepsins function as homodimers. The active site aspartate occurs within a motif (Asp-Thr/Ser-Gly), as it does in pepsin. Retroviral aspartyl protease is synthesized as part of the POL polyprotein that contains an aspartyl protease, a reverse transcriptase, RNase H, and an integrase. The POL polyprotein undergoes specific enzymatic cleavage to yield the mature proteins. In aspartate peptidases, Asp residues are ligands of an activated water molecule in all examples where
Probab=22.29 E-value=69 Score=20.18 Aligned_cols=16 Identities=25% Similarity=0.287 Sum_probs=12.1
Q ss_pred EEecCCceEEEecCCC
Q psy1547 35 ILGTGSRRLLLDTGEP 50 (216)
Q Consensus 35 li~~~~~~iliD~g~~ 50 (216)
.|++..-.+|+|+|..
T Consensus 4 ~InG~~~~fLvDTGA~ 19 (86)
T cd06095 4 TVEGVPIVFLVDTGAT 19 (86)
T ss_pred EECCEEEEEEEECCCC
Confidence 4555666899999976
No 115
>PRK12457 2-dehydro-3-deoxyphosphooctonate aldolase; Provisional
Probab=21.89 E-value=2.5e+02 Score=22.57 Aligned_cols=43 Identities=14% Similarity=0.163 Sum_probs=25.6
Q ss_pred CceEEEecCCC------------CChhHHHHHHHHHhhCCCCccEEEe-cccCccccC
Q psy1547 40 SRRLLLDTGEP------------DHMEYIENLKQVLNKESISLEHIVL-SHWHNDHVG 84 (216)
Q Consensus 40 ~~~iliD~g~~------------~~~~~~~~~~~~l~~~~~~i~~v~~-TH~H~DH~g 84 (216)
+-.|++|+... ...+++..+.+.--..| +|.+++ ||.+||+..
T Consensus 191 ~lPVi~DpSHsvq~p~~~g~~s~G~re~v~~larAAvA~G--aDGl~iEvHpdP~~Al 246 (281)
T PRK12457 191 DLPVIFDVTHSLQCRDPLGAASGGRRRQVLDLARAGMAVG--LAGLFLEAHPDPDRAR 246 (281)
T ss_pred CCCEEEeCCccccCCCCCCCCCCCCHHHHHHHHHHHHHhC--CCEEEEEecCCccccC
Confidence 55788898663 22334554444433333 565554 888888865
No 116
>PRK15047 N-hydroxyarylamine O-acetyltransferase; Provisional
Probab=21.87 E-value=1.7e+02 Score=23.35 Aligned_cols=41 Identities=20% Similarity=0.290 Sum_probs=23.5
Q ss_pred ccccccceEEeccCCCCccCCCCceEEEEecCCceEEEecCCCC
Q psy1547 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPD 51 (216)
Q Consensus 8 ~~~v~~~v~~v~~~~~~~~~~~~~n~~li~~~~~~iliD~g~~~ 51 (216)
++.+..+|++- .+...+....-..+|.-+++..|+|.|++.
T Consensus 87 v~~~~arV~~~---~~~~~~~~tH~~l~V~i~~~~yLvDVGFG~ 127 (281)
T PRK15047 87 VRSLLGRVVLS---NPPALPPRTHRLLLVELEGEKWIADVGFGG 127 (281)
T ss_pred EEEEEEEEEec---CCCCCCCcCcEEEEEEECCeeEEEEecCCC
Confidence 44556666552 111111122334555668889999999985
No 117
>PF10686 DUF2493: Protein of unknown function (DUF2493); InterPro: IPR019627 This entry is represented by Mycobacteriophage D29, Gp61. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. Members of this family are mainly Proteobacteria. The function is not known.
Probab=21.68 E-value=2.1e+02 Score=17.53 Aligned_cols=34 Identities=18% Similarity=0.374 Sum_probs=24.6
Q ss_pred CCcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCCeEE
Q psy1547 158 EENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPDIIY 198 (216)
Q Consensus 158 ~~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~ 198 (216)
+-+|+|+|-- .+.|.....++|+++.+..+++++
T Consensus 3 g~rVli~GgR-------~~~D~~~i~~~Ld~~~~~~~~~~l 36 (71)
T PF10686_consen 3 GMRVLITGGR-------DWTDHELIWAALDKVHARHPDMVL 36 (71)
T ss_pred CCEEEEEECC-------ccccHHHHHHHHHHHHHhCCCEEE
Confidence 3578888873 335777788899998888787443
No 118
>cd08165 MPP_MPPE1 human MPPE1 and related proteins, metallophosphatase domain. MPPE1 is a functionally uncharacterized metallophosphatase domain-containing protein. The MPPE1 gene is located on chromosome 18 and is a candidate susceptibility gene for Bipolar disorder. MPPE1 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to
Probab=21.65 E-value=1.6e+02 Score=20.92 Aligned_cols=12 Identities=25% Similarity=0.238 Sum_probs=9.0
Q ss_pred CCcEEEEcceec
Q psy1547 158 EENVVFSGDTIL 169 (216)
Q Consensus 158 ~~~vl~~GD~~~ 169 (216)
.+.++++||++-
T Consensus 39 pd~vv~~GDl~~ 50 (156)
T cd08165 39 PDVVFVLGDLFD 50 (156)
T ss_pred CCEEEECCCCCC
Confidence 467899999653
No 119
>COG1107 Archaea-specific RecJ-like exonuclease, contains DnaJ-type Zn finger domain [DNA replication, recombination, and repair]
Probab=21.65 E-value=1.3e+02 Score=26.98 Aligned_cols=38 Identities=21% Similarity=0.325 Sum_probs=24.2
Q ss_pred eEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCccccC
Q psy1547 42 RLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVG 84 (216)
Q Consensus 42 ~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~DH~g 84 (216)
.+|+|.|+..+. +.. .+.++.. .++.|++-|.|+|-.-
T Consensus 421 ~VlvDnGsTeED--ipA-~~~~k~Y--gi~ivVVDHH~Pde~v 458 (715)
T COG1107 421 LVLVDNGSTEED--IPA-IKQLKAY--GIDIVVVDHHYPDEAV 458 (715)
T ss_pred EEEEcCCCcccc--cHH-HHHHHhc--CCCEEEEcCCCCcchh
Confidence 589999987532 222 2233322 4788888888888655
No 120
>PF02542 YgbB: YgbB family; InterPro: IPR003526 MECDP (2-C-methyl-D-erythritol 2,4-cyclodiphosphate) synthetase, an enzyme in the non-mevalonate pathway of isoprenoid synthesis, isoprenoids being essential in all organisms. Isoprenoids can also be synthesized through the mevalonate pathway. The non-mevolante route is used by many bacteria and human pathogens, including Mycobacterium tuberculosis and Plasmodium falciparum. This route appears to involve seven enzymes. MECDP synthetase catalyses the intramolecular attack by a phosphate group on a diphosphate, with cytidine monophosphate (CMP) acting as the leaving group to give the cyclic diphosphate product MEDCP. The enzyme is a trimer with three active sites shared between adjacent copies of the protein. The enzyme also has two metal binding sites, the metals playing key roles in catalysis[]. A number of proteins from eukaryotes and prokaryotes share this common N-terminal signature and appear to be involved in terpenoid biosynthesis. The YgbB protein is a putative enzyme of this type [].; GO: 0008685 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity, 0016114 terpenoid biosynthetic process; PDB: 3T80_B 3GHZ_A 2PMP_A 3F6M_A 3FPI_A 3RE3_A 1T0A_C 1W57_A 1W55_A 3B6N_A ....
Probab=21.29 E-value=88 Score=22.67 Aligned_cols=33 Identities=21% Similarity=0.440 Sum_probs=23.3
Q ss_pred ceeecCCCCeEEECCeeEEE-EeCCCCCCCceEE
Q psy1547 122 TVQTLTDGQLLKVEGATLRV-IHTPGHTTDHIVL 154 (216)
Q Consensus 122 ~~~~~~~~~~~~~g~~~i~~-~~~pgHt~~~~~~ 154 (216)
..+.|.++..+.+||+.+.. ...-|||.|.+.+
T Consensus 8 D~H~~~~~r~L~LgGV~ip~~~gl~gHSDgDVl~ 41 (157)
T PF02542_consen 8 DVHRFVEGRPLILGGVEIPSEKGLEGHSDGDVLL 41 (157)
T ss_dssp EEEEEEETSEEEETTEEEEESEEEESSSS--HHH
T ss_pred EeeeecCCCCEEEeeEEcCCCCCCcccChHHHHH
Confidence 35677889999999977776 3446899887654
No 121
>KOG1378|consensus
Probab=20.93 E-value=1.3e+02 Score=25.90 Aligned_cols=41 Identities=17% Similarity=0.220 Sum_probs=30.5
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCCeEEcC
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPDIIYPA 200 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~v~pg 200 (216)
.-|++.||+.+...... .-.++|.+.++-+.+.-|=+++.|
T Consensus 176 d~vlhiGDlsYa~~~~n-~~wD~f~r~vEp~As~vPymv~~G 216 (452)
T KOG1378|consen 176 DAVLHIGDLSYAMGYSN-WQWDEFGRQVEPIASYVPYMVCSG 216 (452)
T ss_pred cEEEEecchhhcCCCCc-cchHHHHhhhhhhhccCceEEecc
Confidence 45889999877665554 556788888998888877766655
No 122
>PF01644 Chitin_synth_1: Chitin synthase; InterPro: IPR004834 This region is found commonly in chitin synthases classes I, II and III 2.4.1.16 from EC. Chitin a linear homopolymer of GlcNAc residues, it is an important component of the cell wall of fungi and is synthesised on the cytoplasmic surface of the cell membrane by membrane bound chitin synthases []. ; GO: 0004100 chitin synthase activity, 0006031 chitin biosynthetic process
Probab=20.86 E-value=1.2e+02 Score=22.14 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=15.8
Q ss_pred CCceEEEecCCCCChhHHHHHHH
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQ 61 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~ 61 (216)
++-++|||+|.-+....+-.+.+
T Consensus 139 P~vcvllDvGT~P~~~siy~Lwk 161 (163)
T PF01644_consen 139 PNVCVLLDVGTKPGKDSIYHLWK 161 (163)
T ss_pred CcEEEEEecCCCcCchHHHHHHh
Confidence 55679999999876654444443
No 123
>PLN02369 ribose-phosphate pyrophosphokinase
Probab=20.84 E-value=2e+02 Score=23.24 Aligned_cols=41 Identities=15% Similarity=0.037 Sum_probs=27.5
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecccCc
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH~H~ 80 (216)
++.+++||-.-.... .+....+.+.+.|..-..++.||.-.
T Consensus 202 g~~viivDDii~TG~-Tl~~a~~~l~~~Ga~~v~~~~tH~v~ 242 (302)
T PLN02369 202 GKVAIMVDDMIDTAG-TITKGAALLHQEGAREVYACATHAVF 242 (302)
T ss_pred CCEEEEEcCcccchH-HHHHHHHHHHhCCCCEEEEEEEeeee
Confidence 455788887665433 34555666777677667899999753
No 124
>PRK09453 phosphodiesterase; Provisional
Probab=20.73 E-value=1.4e+02 Score=21.77 Aligned_cols=10 Identities=30% Similarity=0.541 Sum_probs=6.1
Q ss_pred CcEEEEccee
Q psy1547 159 ENVVFSGDTI 168 (216)
Q Consensus 159 ~~vl~~GD~~ 168 (216)
+.++++||.+
T Consensus 29 d~ii~lGDi~ 38 (182)
T PRK09453 29 DWLVHLGDVL 38 (182)
T ss_pred CEEEEccccc
Confidence 4566677744
No 125
>PF07355 GRDB: Glycine/sarcosine/betaine reductase selenoprotein B (GRDB); InterPro: IPR022787 This entry represents selenoprotein B of glycine reductase, sarcosine reductase, betaine reductase, D-proline reductase, and perhaps others. All members are expected to contain an internal UGA codon, encoding selenocysteine, which may be misinterpreted as a stop codon. ; GO: 0030699 glycine reductase activity, 0050485 oxidoreductase activity, acting on X-H and Y-H to form an X-Y bond, with a disulfide as acceptor, 0055114 oxidation-reduction process, 0030700 glycine reductase complex
Probab=20.70 E-value=1.6e+02 Score=24.37 Aligned_cols=36 Identities=19% Similarity=0.468 Sum_probs=24.5
Q ss_pred cEEEEcceecCCCccccccHHHHHHH-HHHHHcCCCCeEEcCC
Q psy1547 160 NVVFSGDTILGEGTTVFSDLISYIES-LRRIRSLKPDIIYPAH 201 (216)
Q Consensus 160 ~vl~~GD~~~~~~~~~~~~~~~~~~~-l~~l~~~~~~~v~pgH 201 (216)
..+++||-++. .+.++..+. ++.+.++++|+++.|=
T Consensus 52 ~TiiCGDnyf~------en~eea~~~i~~mv~~~~pD~viaGP 88 (349)
T PF07355_consen 52 ATIICGDNYFN------ENKEEALKKILEMVKKLKPDVVIAGP 88 (349)
T ss_pred EEEEECcchhh------hCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 45677885554 556666554 4566789999998874
No 126
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=20.66 E-value=1.6e+02 Score=23.80 Aligned_cols=40 Identities=13% Similarity=0.134 Sum_probs=21.2
Q ss_pred cCCceEEEecCCCCChhHHHHHHHHHhhCCCCccEEEecc
Q psy1547 38 TGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSH 77 (216)
Q Consensus 38 ~~~~~iliD~g~~~~~~~~~~~~~~l~~~~~~i~~v~~TH 77 (216)
++.++++||....-..+....+++.+...+.....+++|.
T Consensus 94 ~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~ 133 (290)
T PRK05917 94 SPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSA 133 (290)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeC
Confidence 3445555555544444445556666665555555555554
No 127
>PHA02546 47 endonuclease subunit; Provisional
Probab=20.61 E-value=1.9e+02 Score=23.78 Aligned_cols=46 Identities=9% Similarity=0.164 Sum_probs=23.2
Q ss_pred CcEEEEcceecCCCccccccHHHHHHH--HHHHHcCCCC--eEEcCCCccc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIES--LRRIRSLKPD--IIYPAHGPVV 205 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~--l~~l~~~~~~--~v~pgHg~~~ 205 (216)
.-++++||++-. ..........+.+. ++++.+.+.. .+...|+...
T Consensus 41 D~VliaGDlfD~-~~~~~~~~~~~~~~~l~~~L~~~gi~v~~I~GNHD~~~ 90 (340)
T PHA02546 41 TTWIQLGDTFDV-RKAITQNTMNFVREKIFDLLKEAGITLHVLVGNHDMYY 90 (340)
T ss_pred CEEEECCcccCC-CCCCCHHHHHHHHHHHHHHHHHCCCeEEEEccCCCccc
Confidence 468889995433 22111112223332 4455554444 5666788643
No 128
>cd07402 MPP_GpdQ Enterobacter aerogenes GpdQ and related proteins, metallophosphatase domain. GpdQ (glycerophosphodiesterase Q, also known as Rv0805 in Mycobacterium tuberculosis) is a binuclear metallophosphoesterase from Enterobacter aerogenes that catalyzes the hydrolysis of mono-, di-, and triester substrates, including some organophosphate pesticides and products of the degradation of nerve agents. The GpdQ homolog, Rv0805, has 2',3'-cyclic nucleotide phosphodiesterase activity. GpdQ and Rv0805 belong to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosa
Probab=20.45 E-value=1.8e+02 Score=21.98 Aligned_cols=39 Identities=21% Similarity=0.245 Sum_probs=20.4
Q ss_pred CcEEEEcceecCCCccccccHHHHHHHHHHHHcCCCC-eEEcC-CCc
Q psy1547 159 ENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPD-IIYPA-HGP 203 (216)
Q Consensus 159 ~~vl~~GD~~~~~~~~~~~~~~~~~~~l~~l~~~~~~-~v~pg-Hg~ 203 (216)
.-++++||++.. .+..++...++.+.+++.. ..++| |+.
T Consensus 42 d~vi~~GDl~~~------~~~~~~~~~~~~l~~~~~p~~~v~GNHD~ 82 (240)
T cd07402 42 DLVLVTGDLTDD------GSPESYERLRELLAALPIPVYLLPGNHDD 82 (240)
T ss_pred CEEEECccCCCC------CCHHHHHHHHHHHhhcCCCEEEeCCCCCC
Confidence 347889996543 2233444444444444444 44444 765
No 129
>PF02879 PGM_PMM_II: Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II; InterPro: IPR005845 The alpha-D-phosphohexomutase superfamily is composed of four related enzymes, each of which catalyses a phosphoryl transfer on their sugar substrates: phosphoglucomutase (PGM), phosphoglucomutase/phosphomannomutase (PGM/PMM), phosphoglucosamine mutase (PNGM), and phosphoacetylglucosamine mutase (PAGM) []. PGM (5.4.2.2 from EC) converts D-glucose 1-phosphate into D-glucose 6-phosphate, and participates in both the breakdown and synthesis of glucose []. PGM/PMM (5.4.2.2 from EC; 5.4.2.8 from EC) are primarily bacterial enzymes that use either glucose or mannose as substrate, participating in the biosynthesis of a variety of carbohydrates such as lipopolysaccharides and alginate [, ]. Both PNGM (5.4.2.3 from EC) and PAGM (5.4.2.10 from EC) are involved in the biosynthesis of UDP-N-acetylglucosamine [, ]. Despite differences in substrate specificity, these enzymes share a similar catalytic mechanism, converting 1-phospho-sugars to 6-phospho-sugars via a biphosphorylated 1,6-phospho-sugar. The active enzyme is phosphorylated at a conserved serine residue and binds one magnesium ion; residues around the active site serine are well conserved among family members. The reaction mechanism involves phosphoryl transfer from the phosphoserine to the substrate to create a biophosphorylated sugar, followed by a phosphoryl transfer from the substrate back to the enzyme []. The structures of PGM and PGM/PMM have been determined, and were found to be very similar in topology. These enzymes are both composed of four domains and a large central active site cleft, where each domain contains residues essential for catalysis and/or substrate recognition. Domain I contains the catalytic phosphoserine, domain II contains a metal-binding loop to coordinate the magnesium ion, domain III contains the sugar-binding loop that recognises the two different binding orientations of the 1- and 6-phospho-sugars, and domain IV contains a phosphate-binding site required for orienting the incoming phospho-sugar substrate. This entry represents domain II found in alpha-D-phosphohexomutase enzymes. This domain has a 3-layer alpha/beta/alpha topology.; GO: 0016868 intramolecular transferase activity, phosphotransferases, 0005975 carbohydrate metabolic process; PDB: 2F7L_A 3PDK_B 1KFQ_B 1KFI_A 1C47_A 1VKL_B 1LXT_A 1JDY_B 3PMG_A 1C4G_B ....
Probab=20.39 E-value=2.4e+02 Score=18.24 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=18.4
Q ss_pred CCceEEEecCCCCChhHHHHHHHHHh
Q psy1547 39 GSRRLLLDTGEPDHMEYIENLKQVLN 64 (216)
Q Consensus 39 ~~~~iliD~g~~~~~~~~~~~~~~l~ 64 (216)
.+-.|+||+..+.....+..+.+.++
T Consensus 20 ~~~kivvD~~~G~~~~~~~~ll~~lg 45 (104)
T PF02879_consen 20 SGLKIVVDCMNGAGSDILPRLLERLG 45 (104)
T ss_dssp TTCEEEEE-TTSTTHHHHHHHHHHTT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHcC
Confidence 44579999999887766777776665
Done!