RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy1547
(216 letters)
>4ad9_A Lactb2, beta-lactamase-like protein 2; hydrolase, metallo-beta
lactamase, mitochondria; 2.60A {Homo sapiens}
Length = 289
Score = 231 bits (591), Expect = 9e-77
Identities = 110/208 (52%), Positives = 144/208 (69%), Gaps = 6/208 (2%)
Query: 1 MSAKIPNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLK 60
M+A + V +LS+RV+RVLG NPGPMTLQGTNTY++GTG RR+L+DTGEP EYI LK
Sbjct: 2 MAAVLQRVERLSNRVVRVLGCNPGPMTLQGTNTYLVGTGPRRILIDTGEPAIPEYISCLK 61
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHIN-PDSATIWKF-KGTEKDEAQATDFVP 118
Q L + + +++ IV++HWH DH GG+ DI + IN + I K + +++E
Sbjct: 62 QALTEFNTAIQEIVVTHWHRDHSGGIGDICKSINNDTTYCIKKLPRNPQREEIIGNGEQQ 121
Query: 119 ENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVFSD 178
L DG ++K EGATLRV++TPGHT DH+ L LEEEN +FSGD ILGEGTTVF D
Sbjct: 122 Y----VYLKDGDVIKTEGATLRVLYTPGHTDDHMALLLEEENAIFSGDCILGEGTTVFED 177
Query: 179 LISYIESLRRIRSLKPDIIYPAHGPVVE 206
L Y+ SL+ + +K DIIYP HGPV+
Sbjct: 178 LYDYMNSLKELLKIKADIIYPGHGPVIH 205
>3adr_A Putative uncharacterized protein ST1585; quorum sensing, quinolone
signal, metallo-beta-lactamase FOL conserved
hypothetical protein; HET: EPE; 1.80A {Sulfolobus
tokodaii}
Length = 261
Score = 156 bits (397), Expect = 9e-48
Identities = 43/213 (20%), Positives = 83/213 (38%), Gaps = 38/213 (17%)
Query: 22 NPGPMTLQGT-NTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80
GP+ Y++ +++D G + + L ++ ++IVL+H H
Sbjct: 10 PAGPVEFPEIATVYVMCGEKLTVMIDAGVSNSIADFSFLDKL--------DYIVLTHLHI 61
Query: 81 DHVGGLKDIFEHIN--------------------PDSATIWKFKGTEKDEAQATDFVPEN 120
DH+G L ++ + + + K G + +
Sbjct: 62 DHIGLLPELLQVYKAKVLVKSGFKKYLTSEDGLKKLNESAEKVLGDLYYVYGGLEKKLDQ 121
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL-------GEGT 173
V + + + G +R+I+TPGH H+ + + ++ +F+GD+ T
Sbjct: 122 DKVIEVEGNEEFDLGGYRMRLIYTPGHARHHMSVLV--DDFLFTGDSAGAYFNGVVIPTT 179
Query: 174 TVFSDLISYIESLRRIRSLKPDIIYPAHGPVVE 206
D Y+ESL+R LKP ++ AHG +V
Sbjct: 180 PPVIDYKMYMESLKRQIELKPKVVGFAHGGLVS 212
>2zo4_A Metallo-beta-lactamase family protein; hydrolase; 2.10A {Thermus
thermophilus}
Length = 317
Score = 147 bits (373), Expect = 1e-43
Identities = 50/227 (22%), Positives = 80/227 (35%), Gaps = 43/227 (18%)
Query: 22 NPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLE---HIVLSHW 78
P P L+ N Y+L L+DT L+ L + + + I+L+H
Sbjct: 13 VPIPYPLKTVNLYLLQGAGEVALVDTA-LGTRAARGALELHLAELGLCFQDVKTILLTHH 71
Query: 79 HNDHVGG--------------------LKDIFEHINPDSATIWKF-----------KGTE 107
H DH G + + W+ +G
Sbjct: 72 HPDHYGLSGFFEGLGARVFLHEEEFARGHRFWREPEAFAEASWRLFLDHGTPEGALQGIR 131
Query: 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDT 167
+ + + V + L DG+ L+V G LRV+ TPGH H LEEE V+ +GD
Sbjct: 132 ETVEKTRERVHPPQNPLPLRDGEALEVAGKRLRVLWTPGHADGHAAFYLEEEGVLLAGDA 191
Query: 168 ILGEGTTVFS--------DLISYIESLRRIRSLKPDIIYPAHGPVVE 206
+L + + L ++ SL R+ L + Y H +
Sbjct: 192 LLEKVSPNVGLWAYTRENPLKDFLRSLDRLADLGARVAYAGHFGPIA 238
>1a7t_A Metallo-beta-lactamase; hydrolase (beta-lactamase), zinc; HET: MES;
1.85A {Bacteroides fragilis} SCOP: d.157.1.1 PDB:
1a8t_A* 2bmi_A 1kr3_A 1znb_A 2znb_A 3znb_A 4znb_A
1hlk_A*
Length = 232
Score = 137 bits (348), Expect = 8e-41
Identities = 45/213 (21%), Positives = 87/213 (40%), Gaps = 18/213 (8%)
Query: 2 SAKIPNVSQLSSRVIRVLG-MNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLK 60
+ +++QLS +V + + +N I+ + LLDT D +
Sbjct: 7 ISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTPINDAQ-TEMLVN 65
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN 120
V + + + +HWH D +GGL + + + T + VPE+
Sbjct: 66 WVTDSLHAKVTTFIPNHWHGDCIGGLGYLQRK----GVQSYANQMTIDLAKEKGLPVPEH 121
Query: 121 KTVQTLTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGE-----GTT 174
TD + ++G L+ + GH TD+IV+ L EN++F G + G
Sbjct: 122 ----GFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQTTSIGNI 177
Query: 175 VFSDLISYIESLRRIRSLKPD--IIYPAHGPVV 205
+D+ ++ ++L ++++ P + P HG
Sbjct: 178 SDADVTAWPKTLDKVKAKFPSARYVVPGHGNYG 210
>3m8t_A 'BLR6230 protein; subclass B3 beta-lactamase, zinc enzyme,
sulfonamide complex hydrolase-hydrolase inhibitor
complex; HET: 4NZ; 1.33A {Bradyrhizobium japonicum} PDB:
3lvz_A* 2gmn_A
Length = 294
Score = 124 bits (313), Expect = 5e-35
Identities = 36/198 (18%), Positives = 73/198 (36%), Gaps = 17/198 (8%)
Query: 28 LQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
G Y++ T +L+DT P I++ L + ++ I+ +H H DH GG
Sbjct: 52 TDGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFA 111
Query: 88 DIFEH------INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRV 141
+I + + + DE P K + + +G + + TL
Sbjct: 112 EIKKETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTA 171
Query: 142 IHTPGHTTDHIVLKLEEENVVFSGDTIL-GEGTTVFSDLI----------SYIESLRRIR 190
TPGH+ ++ ++ + + GT + L+ Y + + +
Sbjct: 172 HATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAK 231
Query: 191 SLKPDIIYPAHGPVVEVG 208
++K D++ H V +
Sbjct: 232 AMKIDVLLGPHPEVYGMQ 249
>1sml_A Protein (penicillinase); metallo-beta-lactamase, antibiotic
resistance, binuclear zinc, hydrolase; 1.70A
{Stenotrophomonas maltophilia} SCOP: d.157.1.1 PDB:
2aio_A* 2fm6_A 2fu6_A 2fu7_A* 2fu8_A* 2fu9_A* 2gfj_A*
2gfk_A* 2h6a_A 2hb9_A* 2qdt_A* 2qjs_A 2qin_A
Length = 269
Score = 122 bits (307), Expect = 2e-34
Identities = 35/204 (17%), Positives = 68/204 (33%), Gaps = 17/204 (8%)
Query: 22 NPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHND 81
+ + + ++ T +LLD G P ++ + + L I+LSH H D
Sbjct: 29 HTWQIGTEDLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHAD 88
Query: 82 HVGGLKDIFEH------INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVE 135
H G + ++ N +SA + G++ P + + DG+++ V
Sbjct: 89 HAGPVAELKRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVG 148
Query: 136 GATLRVIHTPGHTTDHIVLKLEEEN-----VVFSGDTILGEGTTVF------SDLISYIE 184
G GHT + + D++ G + + Y
Sbjct: 149 GIVFTAHFMAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRR 208
Query: 185 SLRRIRSLKPDIIYPAHGPVVEVG 208
S +R+L D++ H
Sbjct: 209 SFATVRALPCDVLLTPHPGASNWD 232
>2vw8_A PA1000, PQSE; quinolone signal response protein, signaling protein,
SSPF; 1.45A {Pseudomonas aeruginosa PAO1} PDB: 2q0j_A
2q0i_A 3dh8_A*
Length = 303
Score = 119 bits (301), Expect = 4e-33
Identities = 41/220 (18%), Positives = 80/220 (36%), Gaps = 33/220 (15%)
Query: 18 VLGMNPGPMTLQGTNTYILGTGSRRLLL-DTGEPDHMEYIEN--LKQVLNKESISLEHIV 74
L + + ++L G L + G E + + V + + + +
Sbjct: 11 QLDDDLCLLGDVQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQV--HYWL 68
Query: 75 LSHWHNDHVGGLKDIFEH-------INPDSATIWKFKGTEKDEAQATDFVPENKT----- 122
++H H DH G L + + + WK + + + + +
Sbjct: 69 ITHKHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEA 128
Query: 123 -------VQTLTDGQLLKV-EGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTT 174
V+ + DG+ L++ L+VI GH+ DH+V +F GD +
Sbjct: 129 CAWDALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEA 188
Query: 175 V-------FSDLISYIESLRRIRSLKPD-IIYPAHGPVVE 206
F D+ +Y+ESL R++ L + P HG ++
Sbjct: 189 EGVWRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLR 228
>1k07_A FEZ-1 beta-lactamase; monomer with alpha-beta/BETA-alpha fold. two
monomers PER AS UNIT., hydrolase; HET: GOL; 1.65A
{Fluoribacter gormanii} SCOP: d.157.1.1 PDB: 1jt1_A*
1l9y_A
Length = 263
Score = 116 bits (291), Expect = 5e-32
Identities = 34/197 (17%), Positives = 75/197 (38%), Gaps = 20/197 (10%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
+Y++ T +L+++ ++ I+ + L + + +++SH H DH G + I
Sbjct: 24 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELI 83
Query: 90 FEHIN-------PDSATIWKFKGTEKDEAQATDFVPENKTV-QTLTDGQLLKVEGATLRV 141
+ D + I ++ A + TV + L DG+ +++ G L
Sbjct: 84 KQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTA 143
Query: 142 IHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVF------------SDLISYIESLRRI 189
TPGHT ++ ++ ++ V Y S++ +
Sbjct: 144 HLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVL 203
Query: 190 RSLKPDIIYPAHGPVVE 206
S++ DI +H + +
Sbjct: 204 ESMRCDIFLGSHAGMFD 220
>2zwr_A Metallo-beta-lactamase superfamily protein; hydrolase; 2.20A
{Thermus thermophilus} PDB: 2zzi_A
Length = 207
Score = 114 bits (287), Expect = 7e-32
Identities = 50/195 (25%), Positives = 83/195 (42%), Gaps = 32/195 (16%)
Query: 24 GPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHV 83
GP+ N Y++ TG +L+D G+ E L + + I+L+H H DHV
Sbjct: 9 GPL---QENAYLVETGEGPVLIDPGDE-----PEKLLALFQTTGLIPLAILLTHAHFDHV 60
Query: 84 GGLKDIFE------HINPDSATIWKFKGTEKDEAQATDF----VPENKTVQTLTDGQLLK 133
G + + E +++P ++ E + A + V+ L +G
Sbjct: 61 GAVAPLVEALDLPVYLHPLDLPLY-----EGADLAARAWGLAIPKPPLPVRPLEEGM--- 112
Query: 134 VEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI--LGEGTTVF--SDLISYIESLRRI 189
+V+H PGH+ H+ E VFSGD + G +D + SL+R+
Sbjct: 113 -RLFGFQVLHLPGHSPGHVAFYDPEGAQVFSGDLLFRGSVGRYDLPGADPKALFASLKRL 171
Query: 190 RSLKPD-IIYPAHGP 203
SL P+ ++P HGP
Sbjct: 172 LSLPPETRVHPGHGP 186
>1jjt_A IMP-1 metallo beta-lactamase; metallo-beta-lactamase inhibitor,
succinic acid inhibitor, I metallo-beta-lactamase,
hydrolase; HET: BDS; 1.80A {Pseudomonas aeruginosa}
SCOP: d.157.1.1 PDB: 1dd6_A* 1vgn_A* 2doo_A* 1wup_A
1wuo_A 1jje_A* 1ddk_A
Length = 228
Score = 112 bits (283), Expect = 3e-31
Identities = 38/203 (18%), Positives = 80/203 (39%), Gaps = 17/203 (8%)
Query: 8 VSQLSSRV-IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKE 66
+ +L V + + + ++ + L+DT + E L +
Sbjct: 9 IEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTA--KDTEKLVTWFVER 66
Query: 67 SISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTL 126
++ + SH+H+D GG+ E +N S + + T + + N
Sbjct: 67 GYKIKGSISSHFHSDSTGGI----EWLNSRSIPTYASELTNELLKKDGKVQATN-----S 117
Query: 127 TDGQLLKVEGATLRVIH-TPGHTTDHIVLKLEEENVVFSGDTI--LGEGTTVFSDLISYI 183
G + + V + PGHT D++V+ L E ++F G I G G +++ ++
Sbjct: 118 FSGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWP 177
Query: 184 ESLRRIRSLKPD--IIYPAHGPV 204
+S + ++S ++ P+H V
Sbjct: 178 KSAKLLKSKYGKAKLVVPSHSEV 200
>4ax1_B Metallo-beta-lactamase AIM-1; hydrolase, antibiotic resistance,
acquired B3, drug binding; 1.40A {Pseudomonas
aeruginosa} PDB: 4awy_B 4awz_A 4ax0_B
Length = 303
Score = 114 bits (286), Expect = 5e-31
Identities = 40/214 (18%), Positives = 75/214 (35%), Gaps = 27/214 (12%)
Query: 16 IRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYI-ENLKQV-LNKESISLEHI 73
++V G N + G + ++ + + +L+D P I N++ + E + I
Sbjct: 44 LKVYG-NTWYVGTCGISALLVTSDAGHILVDAATPQAGPQILANIRALGFRPEDVR--AI 100
Query: 74 VLSHWHNDHVGGLKDIFEH------INPDSATIWKFKGTEKDEAQATDF--VPENKTVQT 125
V SH H DH G L ++ + + K ++ + V + T
Sbjct: 101 VFSHEHFDHAGSLAELQKATGAPVYARAPAIDTLKRGLPDRTDPNFEVAEPVAPVANIVT 160
Query: 126 LTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEEN-----VVFSGDTILGEGTTVF---- 176
L D ++ V L + +PGHT + D++ VF
Sbjct: 161 LADDGVVSVGPLALTAVASPGHTPGGTSWTWRSCEGDDCRQMVYADSLTAISDDVFRYSD 220
Query: 177 -----SDLISYIESLRRIRSLKPDIIYPAHGPVV 205
L ++ +L R+ +L DI+ H
Sbjct: 221 DAAHPGYLAAFRNTLARVAALDCDILVTPHPSAS 254
>2y8b_A Metallo-B-lactamase; hydrolase, cephalosporins, antibiotic
recognition; 1.70A {Pseudomonas aeruginosa} PDB: 2y8a_A
2y87_A 2yz3_A* 2whg_A* 2wrs_A* 1ko3_A 1ko2_A
Length = 265
Score = 111 bits (280), Expect = 2e-30
Identities = 33/207 (15%), Positives = 83/207 (40%), Gaps = 19/207 (9%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNK 65
+ ++ V + T+ +N I+ LL+DT + + + +++ +
Sbjct: 45 LYKIGDGVWSHIATQKLGDTVYSSNGLIVRDADELLLIDTAWGAKNTVALLAEIEKQIGL 104
Query: 66 ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQT 125
+ + +H+H+D VGG+ + + + T + A + VP +
Sbjct: 105 P---VTRSISTHFHDDRVGGV----DVLRAAGVATYTSPLTRQLAEAAGNEVPAHSLKAL 157
Query: 126 LTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDL 179
+ G +++ + V + H+ D++V+ + V+F G + ++L
Sbjct: 158 SSSGDVVRFGP--VEVFYPGAAHSGDNLVVYVPAVRVLFGGCAVHEASRESAGNVADANL 215
Query: 180 ISYIESLRRIRSLKPD--IIYPAHGPV 204
+ +++RI+ P+ ++ P HG
Sbjct: 216 AEWPATIKRIQQRYPEAEVVIPGHGLP 242
>2xf4_A Hydroxyacylglutathione hydrolase; HET: PG4; 2.30A {Salmonella
enterica}
Length = 210
Score = 109 bits (275), Expect = 4e-30
Identities = 50/194 (25%), Positives = 79/194 (40%), Gaps = 22/194 (11%)
Query: 24 GPMTLQGTNTYILGTGSRR--LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHND 81
N ++ R L+D G E +KQ ++ ++L I+L+H H D
Sbjct: 9 TAF---SQNCSLIWCEQTRLAALVDPGGD-----AEKIKQEVDASGVTLMQILLTHGHLD 60
Query: 82 HVGGLKDIFEH------INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVE 135
HVG ++ +H W + D + L DG + V
Sbjct: 61 HVGAASELAQHYGVPVIGPEKEDEFWLQGLPAQSRMFGLDECQPLTPDRWLNDGDRVSVG 120
Query: 136 GATLRVIHTPGHTTDHIVLKLEEENVVFSGDTIL--GEGTTVF--SDLISYIESLR-RIR 190
TL+V+H PGHT H+V E+ ++ SGD I G G + F D I++++ ++
Sbjct: 121 NVTLQVLHCPGHTPGHVVFFDEQSQLLISGDVIFKGGVGRSDFPRGDHTQLIDAIKRKLL 180
Query: 191 SLKPD-IIYPAHGP 203
L D P HGP
Sbjct: 181 PLGDDVTFIPGHGP 194
>1m2x_A Class B carbapenemase BLAB-1; alpha-beta/BETA-alpha fold.,
hydrolase; HET: MCO; 1.50A {Elizabethkingia
meningoseptica} SCOP: d.157.1.1
Length = 223
Score = 103 bits (258), Expect = 1e-27
Identities = 36/207 (17%), Positives = 74/207 (35%), Gaps = 21/207 (10%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNK 65
+ +L + N T N L T +++D E + + + + K
Sbjct: 4 IEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCPWGEDKFKSFTDEIYKKHGK 63
Query: 66 ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQT 125
+ + + +H H+D GGL E+ A + K T+ A+ + T
Sbjct: 64 K---VIMNIATHSHDDRAGGL----EYFGKIGAKTYSTKMTDSILAKENKPRAQ----YT 112
Query: 126 LTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDL 179
+ + KV + +V + GHT D++V+ +E V+ G I + + +
Sbjct: 113 FDNNKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYV 172
Query: 180 ISYIESLRRIRS--LKPDIIYPAHGPV 204
+ +S+ I+ + H
Sbjct: 173 NDWTQSVHNIQQKFSGAQYVVAGHDDW 199
>4eyb_A Beta-lactamase NDM-1; metallo beta lactamase, antibiotic,
hydrolase-antibiotic COM; HET: 0WO; 1.16A {Klebsiella
pneumoniae} PDB: 4ey2_A* 4eyf_A* 4exy_A 4exs_B 4eyl_A*
3spu_A 3q6x_A* 3rkj_A 3sfp_A* 3rkk_A* 3sbl_A* 3srx_A
3zr9_A 3s0z_A 3pg4_A
Length = 270
Score = 102 bits (256), Expect = 6e-27
Identities = 37/208 (17%), Positives = 75/208 (36%), Gaps = 16/208 (7%)
Query: 8 VSQLSSRVIRVLGMNP-GPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKE 66
QL+ V + +N I+ G R L++DT + + L + +
Sbjct: 51 FRQLAPNVWQHTSYLDMPGFGAVASNGLIVRDGGRVLVVDTA-WTDDQTAQILNWIKQEI 109
Query: 67 SISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN--KTVQ 124
++ + V++H H D +GG+ + ++ + + + Q ++
Sbjct: 110 NLPVALAVVTHAHQDKMGGM----DALHAAGIATYANALSNQLAPQEGMVAAQHSLTFAA 165
Query: 125 TLTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGE-----GTTVFSD 178
L+V + PGHT+D+I + ++ ++ F G I G +D
Sbjct: 166 NGWVEPATAPNFGPLKVFYPGPGHTSDNITVGIDGTDIAFGGCLIKDSKAKSLGNLGDAD 225
Query: 179 LISYIESLRRIRSLKPD--IIYPAHGPV 204
Y S R + P +I +H
Sbjct: 226 TEHYAASARAFGAAFPKASMIVMSHSAP 253
>1xm8_A Glyoxalase II; structural genomics, protein structure initiative,
CESG, AT2G31350, metallo-hydrolase, zinc/iron binuclear
center; 1.74A {Arabidopsis thaliana} SCOP: d.157.1.2
PDB: 2q42_A
Length = 254
Score = 98.8 bits (247), Expect = 1e-25
Identities = 40/149 (26%), Positives = 59/149 (39%), Gaps = 25/149 (16%)
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN 120
L + +L +I+ +H H DH GG ++ + A + +
Sbjct: 38 DSLKRSGRNLTYILNTHHHYDHTGGNLELKDRYG---AKVIGSAMDKDRIPGID------ 88
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI--LG-----EGT 173
L DG G + V+ TPGHT HI L +F+GDT+ L EGT
Sbjct: 89 ---MALKDGDKWMFAGHEVHVMDTPGHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGT 145
Query: 174 TVFSDLISYIESLRRIRSLKPD-IIYPAH 201
+ + SL++I SL D IY H
Sbjct: 146 --PKQM---LASLQKITSLPDDTSIYCGH 169
>3l6n_A Metallo-beta-lactamase; zinc, hydolase, antibiotics resistance,
hydrolase; 1.65A {Chryseobacterium indologenes}
Length = 219
Score = 96.4 bits (240), Expect = 7e-25
Identities = 30/185 (16%), Positives = 68/185 (36%), Gaps = 21/185 (11%)
Query: 30 GTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
N+ L T +L D + + ++ +K+ N + + +H H+D G L
Sbjct: 30 SANSMYLVTKKGVVLFDVPWEKVQYQSLMDTIKKRHNLP---VVAVFATHSHDDRAGDL- 85
Query: 88 DIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHT-PG 146
N + T + + + + G+ ++ G V G
Sbjct: 86 ---SFFNNKGIKTYATAKTNEFLKKDGKATST----EIIKTGKPYRIGGEEFVVDFLGEG 138
Query: 147 HTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDLISYIESLRRIRS--LKPDIIYP 199
HT D++V+ + NV+ G + T +++ + +++ ++++ K +I P
Sbjct: 139 HTADNVVVWFPKYNVLDGGCLVKSNSATDLGYIKEANVEQWPKTINKLKAKYSKATLIIP 198
Query: 200 AHGPV 204
H
Sbjct: 199 GHDEW 203
>2ohh_A Type A flavoprotein FPRA; beta-lactamase like domain, flavodoxine
like domain, oxidore; HET: FMN; 1.70A
{Methanothermobacter thermautotrophicusorganism_taxid}
PDB: 2ohi_A* 2ohj_A*
Length = 404
Score = 99.2 bits (247), Expect = 9e-25
Identities = 42/217 (19%), Positives = 74/217 (34%), Gaps = 40/217 (18%)
Query: 25 PMTLQGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESIS-LEHIVLSHWHN 80
TLQGT N Y++ L+D P E + ++ L + + +++I+ +H
Sbjct: 27 GYTLQGTTYNAYLVCGDEGVALIDNSYPGTFDELMARVEDALQQVGMERVDYIIQNHVEK 86
Query: 81 DHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLT--DGQLLKVEGAT 138
DH G L ++ TE P + + +T G +L + G T
Sbjct: 87 DHSGVLVELHRRFPEA-----PIYCTEVAVKGLLKHYPSLREAEFMTVKTGDVLDLGGKT 141
Query: 139 LRVIHTP-GHTTDHIVLKLEEENVVFSGDTILGEGTT--VFSDLISYIE----------- 184
L + TP H D + L+E+ ++FS D I
Sbjct: 142 LTFLETPLLHWPDSMFTLLDEDGILFSNDAFGQHLCCPQRLDREIPEYILMDAARKFYAN 201
Query: 185 -----------SLRRIRSL----KPDIIYPAHGPVVE 206
++ L + +I P+HG +
Sbjct: 202 LITPLSKLVLKKFDEVKELGLLERIQMIAPSHGQIWT 238
>1mqo_A Beta-lactamase II; alpha-beta/BETA-alpha fold, hydrolase; HET: CIT;
1.35A {Bacillus cereus} SCOP: d.157.1.1 PDB: 1bc2_A
1bvt_A* 3i0v_A 3i11_A 3i13_A 3i14_A 3i15_A 2uyx_A 2bc2_A
3bc2_A 2bfl_A 2bfk_A 2bfz_B 2bg2_A 2bg7_A 2bg8_A 1dxk_A
3kns_A 3knr_A 2bfz_A ...
Length = 227
Score = 96.0 bits (239), Expect = 1e-24
Identities = 39/207 (18%), Positives = 78/207 (37%), Gaps = 21/207 (10%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNK 65
+SQL+ V + +N +L T +L+D+ D + E IE +++ K
Sbjct: 18 ISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQK 77
Query: 66 ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQT 125
+ ++++H H D +GG+ + + T + + P +
Sbjct: 78 R---VTDVIITHAHADRIGGI----KTLKERGIKAHSTALTAELAKKNGYEEP----LGD 126
Query: 126 LTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDL 179
L LK + + GHT D+IV+ L + N++ G + + +
Sbjct: 127 LQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYV 186
Query: 180 ISYIESLRRI--RSLKPDIIYPAHGPV 204
+ S+ + R + + P HG V
Sbjct: 187 NEWSTSIENVLKRYRNINAVVPGHGEV 213
>2p97_A Hypothetical protein; putative metal-dependent hydrolase,
structural genomics, JOI for structural genomics, JCSG;
HET: MSE; 1.65A {Anabaena variabilis atcc 29413} SCOP:
d.157.1.12
Length = 201
Score = 93.0 bits (231), Expect = 8e-24
Identities = 37/188 (19%), Positives = 65/188 (34%), Gaps = 37/188 (19%)
Query: 30 GTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
N + +L+D +++E+L V IVL++ DHV K
Sbjct: 23 DFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGV--------VWIVLTNS--DHVRSAK 72
Query: 88 DIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG- 146
+I + I E + + + L+DG L L+V+ G
Sbjct: 73 EIADQTY---TKIA----GPVAEKENFPIYCD----RWLSDGDELVPG---LKVMELQGS 118
Query: 147 HTTDHIVLKLEEENVVFSGDTILGE--GTTVFS------DLISYIESLRRIRSLKPD-II 197
T + L L EE + +GD + G + + S+RR+ +L+ +
Sbjct: 119 KTPGELAL-LLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAV 177
Query: 198 YPAHGPVV 205
G V
Sbjct: 178 LVGDGWSV 185
>2qed_A Hydroxyacylglutathione hydrolase; metallo-B- superfamily,
salmonella typhimurium LT2; 1.45A {Salmonella
typhimurium} SCOP: d.157.1.2
Length = 258
Score = 93.4 bits (233), Expect = 2e-23
Identities = 42/149 (28%), Positives = 67/149 (44%), Gaps = 28/149 (18%)
Query: 61 QVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPEN 120
+ + + E I L+H H+DHVGG+K++ +H T++ G + + +
Sbjct: 44 KAIAEHKWMPEAIFLTHHHHDHVGGVKELLQHFP--QMTVY---GPAETQDKGAT----- 93
Query: 121 KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTI--LG-----EGT 173
+ DG ++V G + TPGHT H+ +F GDT+ G EGT
Sbjct: 94 ---HLVGDGDTIRVLGEKFTLFATPGHTLGHVCYF--SRPYLFCGDTLFSGGCGRLFEGT 148
Query: 174 TVFSDLISYIESLRRIRSLKPD-IIYPAH 201
S + +SL +I SL D +I AH
Sbjct: 149 --PSQM---YQSLMKINSLPDDTLICCAH 172
>1ztc_A Hypothetical protein TM0894; structural genomics, joint center for
structural genomics, J protein structure initiative,
PSI, hydrolase; HET: MSE; 2.10A {Thermotoga maritima}
SCOP: d.157.1.11
Length = 221
Score = 92.5 bits (230), Expect = 2e-23
Identities = 39/198 (19%), Positives = 75/198 (37%), Gaps = 22/198 (11%)
Query: 23 PGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLE---HIVLSHWH 79
PG + + L RR+++D G M+ L++ ++ IS + ++ +H H
Sbjct: 27 PGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMD---ELEEKFSELGISPDDITDVLFTHVH 83
Query: 80 NDHVGGLKDIFE----HINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVE 135
DH+ +FE +++ T + + K V L + L E
Sbjct: 84 LDHIFNS-VLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDE 142
Query: 136 GATLRVIHTPGHTTDHIVLKLEEEN---VVFSGDTI----LGEGTTVFSDLISYIESLRR 188
++V HTP H +H+ L+ EN V+ +GD + L R
Sbjct: 143 K--VKVFHTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDR 200
Query: 189 IRSLKPDIIYPAHGPVVE 206
+ + D++ H ++
Sbjct: 201 VG--RIDLLVFPHDAPLK 216
>2fhx_A SPM-1; metallo-beta-lactamase, dinuclear zinc, antibiotic resistanc
hydrolase, metal binding protein; 1.90A {Pseudomonas
aeruginosa}
Length = 246
Score = 91.8 bits (228), Expect = 6e-23
Identities = 29/198 (14%), Positives = 69/198 (34%), Gaps = 27/198 (13%)
Query: 32 NTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK-- 87
N + +++ + E + + + K + +H+H D GG +
Sbjct: 31 NVLVAKMLDGTVVIVSSPFENLGTQTLMDWVAKTMKPKK--VVAINTHFHLDGTGGNEIY 88
Query: 88 -----DIFEH------------INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQ 130
+ + + A + K ++ VP + L G+
Sbjct: 89 KKMGAETWSSDLTKQLRLEENKKDRIKAAEFYKNEDLKRRILSSHPVPADNVF-DLKQGK 147
Query: 131 LLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGEGTTVF--SDLISYIESLR 187
+ + V P H+ D++V+ ++ ++F G I + +++ ++ +S R
Sbjct: 148 VFSFSNELVEVSFPGPAHSPDNVVVYFPKKKLLFGGCMIKPKELGYLGDANVKAWPDSAR 207
Query: 188 RIRSLKPDIIYPAHGPVV 205
R++ I+ P HG
Sbjct: 208 RLKKFDAKIVIPGHGEWG 225
>3iog_A Beta-lactamase; hydrolase, antibiotic resistance, metal-binding;
HET: SDF; 1.41A {Aeromonas hydrophila} PDB: 1x8i_A
3fai_A* 3iof_A* 1x8h_A 2qds_A* 2gkl_A* 1x8g_A* 3f9o_A
Length = 227
Score = 88.6 bits (220), Expect = 7e-22
Identities = 31/194 (15%), Positives = 73/194 (37%), Gaps = 25/194 (12%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
N+ + ++ E + +K+V K + ++ +++H D GG
Sbjct: 22 QENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKP---VLEVINTNYHTDRAGGN- 77
Query: 88 DIFEHINPDSATIWKFKGT----EKDEAQATDFVPENK--------TVQTLTDGQLLKVE 135
+ A + + T + D A+ F + + + ++
Sbjct: 78 ---AYWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQ 134
Query: 136 GATLRVIH-TPGHTTDHIVLKLEEENVVFSGDTILGE-GTTVFSDLISYIESLRRIRSLK 193
+R + P HT D I + +E V++ G + + G F+D+ +Y ++L R++++K
Sbjct: 135 EGKVRAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEKLGNLSFADVKAYPQTLERLKAMK 194
Query: 194 PD--IIYPAHGPVV 205
+ H +
Sbjct: 195 LPIKTVIGGHDSPL 208
>1qh5_A Glyoxalase II, protein (hydroxyacylglutathione hydrolase);
metallo-hydrolase; HET: GSH GBP; 1.45A {Homo sapiens}
SCOP: d.157.1.2 PDB: 1qh3_A*
Length = 260
Score = 84.9 bits (211), Expect = 3e-20
Identities = 38/171 (22%), Positives = 62/171 (36%), Gaps = 41/171 (23%)
Query: 46 DTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKG 105
D +P + + K + L ++ +H H DH GG + + + + ++
Sbjct: 29 DPVQP------QKVVDAARKHGVKLTTVLTTHHHWDHAGGNEKLVKLES--GLKVYGGD- 79
Query: 106 TEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIV-----LKLEEEN 160
D A +T L+V ++ + TP HT+ HI E
Sbjct: 80 ---DRIGALT--------HKITHLSTLQVGSLNVKCLATPCHTSGHICYFVSKPGGSEPP 128
Query: 161 VVFSGDT--ILG-----EGT--TVFSDLISYIESLRRIRSLKPD-IIYPAH 201
VF+GDT + G EGT + L L + L PD +Y H
Sbjct: 129 AVFTGDTLFVAGCGKFYEGTADEMCKAL------LEVLGRLPPDTRVYCGH 173
>3q6v_A Beta-lactamase; metalloenzyme, alpha-beta, hydrolase; 1.37A
{Serratia fonticola} PDB: 3sd9_A
Length = 233
Score = 81.3 bits (201), Expect = 4e-19
Identities = 30/227 (13%), Positives = 72/227 (31%), Gaps = 34/227 (14%)
Query: 1 MSAKIPNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM--EYIEN 58
MS K ++ + V N+ + ++ +
Sbjct: 1 MSEKNLTLTHFKGPLYIVEDKEYVQ-----ENSMVYIGTDGITIIGATWTPETAETLYKE 55
Query: 59 LKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGT----EKDEAQAT 114
+++V + ++ +++H D GG + A I + T +
Sbjct: 56 IRKVSPLP---INEVINTNYHTDRAGGN----AYWKTLGAKIVATQMTYDLQKSQWGSIV 108
Query: 115 DFVPENK--------TVQTLTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSG 165
+F + ++ ++ ++R ++ HT D I + E V++
Sbjct: 109 NFTRQGNNKYPNLEKSLPDTVFPGDFNLQNGSIRAMYLGEAHTKDGIFVYFPAERVLYGN 168
Query: 166 DTILGE-GTTVFSDLISYIESLRRIRS------LKPDIIYPAHGPVV 205
+ G F++ Y ++L +++ LK D I H +
Sbjct: 169 CILKENLGNMSFANRTEYPKTLEKLKGLIEQGELKVDSIIAGHDTPI 215
>2q9u_A A-type flavoprotein; flavodoxin like, beta lactamase like,
oxidoreductase; HET: FMN; 1.90A {Giardia intestinalis}
Length = 414
Score = 81.8 bits (202), Expect = 2e-18
Identities = 39/207 (18%), Positives = 72/207 (34%), Gaps = 37/207 (17%)
Query: 29 QGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
+G+ N+Y + ++D+ + E++ + + I +++V++H DH
Sbjct: 37 EGSSYNSYFI-DDECPTVIDSVKYPFAEEWLSRIAACCPLDKI--KYVVMNHAEGDHASS 93
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVP-ENKTVQTLTDGQLLKVEGATLRVIHT 144
LKD + + AT T+K + E T + D LK+ TL+ I
Sbjct: 94 LKDHYHKF-TN-ATFV---CTKKCQEHLKILYGMEKATWLIVDDKYTLKIGKRTLKFIPV 148
Query: 145 P-GHTTDHIVLKLEEENVVFSGDTILGEGTT--VFSDLISYIE----------------- 184
P H D E+ ++FS D T ++D
Sbjct: 149 PLLHWPDSTFTYCPEDKILFSNDGFGQHYATSRRWADECDVSHVMHLFKEYTANILGLFS 208
Query: 185 -----SLRRIRSLKPDIIYPAHGPVVE 206
+L +++ I AHG
Sbjct: 209 AQMRKALEVASTVEIKYILSAHGVSWR 235
>3tp9_A Beta-lactamase and rhodanese domain protein; structural genomics,
PSI-biology, midwest center for structu genomics, MCSG;
2.70A {Alicyclobacillus acidocaldarius subsp}
Length = 474
Score = 81.6 bits (201), Expect = 3e-18
Identities = 42/213 (19%), Positives = 79/213 (37%), Gaps = 39/213 (18%)
Query: 30 GTNTYILGTGSRR--LLLD-TGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
+Y++G ++D + + Y+ +E + + + +H H D V G
Sbjct: 15 AHASYLVGCQETGEACVIDPARDVE--PYLL----TAKREGLRIVAALETHIHADFVSGA 68
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG 146
+++ + A I +++ + + + L DG L + V+HTPG
Sbjct: 69 REMADRAG---AAIC---VSDEGPPEWKSEYVKAYPHRLLKDGDELHFGNVRIVVMHTPG 122
Query: 147 HTTDHIVLKLEEEN-------VVFSGDTILGEGTTVFSDLI---------------SYIE 184
HT +H+ L + +FSGD + G DL+
Sbjct: 123 HTPEHVSYLLYDGKTSPDVPMALFSGDFVFV-GDVGRPDLLERVAGESGSSEALARQMFR 181
Query: 185 SLRRIRSLKPD-IIYPAHGPVVEVGLSFSLMPT 216
SLR+ +L + PAHG G + +P+
Sbjct: 182 SLRKFEALPDHVQVLPAHGAGSACGKALGAVPS 214
>3r2u_A Metallo-beta-lactamase family protein; structural genomics, for
structural genomics of infectious diseases, csgid, HYDR;
2.10A {Staphylococcus aureus}
Length = 466
Score = 80.8 bits (199), Expect = 5e-18
Identities = 46/213 (21%), Positives = 79/213 (37%), Gaps = 40/213 (18%)
Query: 30 GTNTYILGTGSRR--LLLDTGEP--DHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
+Y++G +++D P D YI V ++E +++ H +H H D G
Sbjct: 36 SQASYLIGCQKTGEAMIID---PIRDLSSYIR----VADEEGLTITHAAETHIHADFASG 88
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
++D+ +N A I+ ++ + + + V L+V+HTP
Sbjct: 89 IRDVAIKLN---ANIYVSGESDDT----LGYKNMPNHTHFVQHNDDIYVGNIKLKVLHTP 141
Query: 146 GHTTDHIVLKLEEEN-------VVFSGDTILGEGT--------------TVFSDLISYIE 184
GHT + I L +E +FSGD I + +
Sbjct: 142 GHTPESISFLLTDEGAGAQVPMGLFSGDFIFVGDIGRPDLLEKAVKVEGSSEIGAKQMFK 201
Query: 185 SLRRIRSLKPD-IIYPAHGPVVEVGLSFSLMPT 216
S+ I+ L I+P HG G S +PT
Sbjct: 202 SIESIKDLPDYIQIWPGHGAGSPCGKSLGAIPT 234
>2p18_A Glyoxalase II; metalloprotein, beta sandwich, alpha-helical domain,
hydrola; HET: SPD; 1.80A {Leishmania infantum} PDB:
2p1e_A*
Length = 311
Score = 78.2 bits (193), Expect = 1e-17
Identities = 31/163 (19%), Positives = 57/163 (34%), Gaps = 26/163 (15%)
Query: 57 ENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFK-GTEKDEAQATD 115
+Q + + I+ +H H DH GG + + ++T+ G D A
Sbjct: 72 HLKQQGNADVTYTFSTILSTHKHWDHSGGNAKLKAELEAMNSTVPVVVVGGANDSIPAVT 131
Query: 116 FVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIV------LKLEEENVVFSGDT-- 167
+ + +G ++V ++ VI P HT H++ + +F+GDT
Sbjct: 132 --------KPVREGDRVQVGDLSVEVIDAPCHTRGHVLYKVQHPQHPNDGVALFTGDTMF 183
Query: 168 ILG-----EGT--TVFSDLISYIESLRRIRSLKPD--IIYPAH 201
I G EG + + + I+P H
Sbjct: 184 IAGIGAFFEGDEKDMCRAMEKVYHIHKGNDYALDKVTFIFPGH 226
>3hnn_A Putative diflavin flavoprotein A 5; PSI-2, protein structure
initiative, northeast structural GE consortium, NESG,
NSR435A, DFA5, electron transport; 1.80A {Nostoc SP}
Length = 262
Score = 75.9 bits (187), Expect = 7e-17
Identities = 32/199 (16%), Positives = 71/199 (35%), Gaps = 32/199 (16%)
Query: 32 NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIF 90
N+Y++ G + ++D M Y+E L+Q +N + + ++++L H+ + + K +
Sbjct: 44 NSYVI-EGDKTAIIDPPVESFMKIYLEALQQTVNLKKL--DYVILGHFSPNRIPTFKALL 100
Query: 91 EHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLK-VEGATLRVIHTPG-HT 148
E + P + A F +N + + + L +G L+ + P
Sbjct: 101 E-LAPQITFVCSLPAAGDLRAA---FPDDNLNILPMRGKETLDLGKGHVLKFLPIPSPRW 156
Query: 149 TDHIVLKLEEENVVFSGDTILGEGTT--VFSDLISYIES--------------------L 186
+ + ++++ VF D + L
Sbjct: 157 PAGLCTYDVQTQILYTDKIFGAHICGDDVFDDNWESFKEDQRYYFNCLMAPHAIHVEAAL 216
Query: 187 RRIRSLKPDIIYPAHGPVV 205
+I L+ + HGP+V
Sbjct: 217 EKISDLQVRLYAVGHGPLV 235
>2gcu_A Putative hydroxyacylglutathione hydrolase 3; ethylmalonic
encephalopathy, ETHE1, structural genomics, protein
structure initiative; 1.48A {Arabidopsis thaliana}
Length = 245
Score = 73.4 bits (181), Expect = 4e-16
Identities = 47/193 (24%), Positives = 75/193 (38%), Gaps = 42/193 (21%)
Query: 30 GTNTYILGTGSRRLLLDTGE-----PDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVG 84
T TY+L S P + ++ +++++ + L + + +H H DHV
Sbjct: 14 STFTYLLADVSH----PDKPALLIDP-VDKTVDRDLKLIDELGLKLIYAMNTHVHADHVT 68
Query: 85 GLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHT 144
G + + + I K G++ D L G + + L V T
Sbjct: 69 GTGLLKTKLPGVKSVISKASGSKAD--------------LFLEPGDKVSIGDIYLEVRAT 114
Query: 145 PGHTTDHIVLKLEE------ENVVFSGDTIL--GEGTTVF-----SDLISYIESLR-RIR 190
PGHT + E + F+GD +L G G T F L Y ES+ +I
Sbjct: 115 PGHTAGCVTYVTGEGADQPQPRMAFTGDAVLIRGCGRTDFQEGSSDQL--Y-ESVHSQIF 171
Query: 191 SLKPD-IIYPAHG 202
+L D +IYPAH
Sbjct: 172 TLPKDTLIYPAHD 184
>1vme_A Flavoprotein; TM0755, structural genomics, JCSG, protein STR
initiative, PSI, joint center for structural genomics,
ELEC transport; HET: MSE; 1.80A {Thermotoga maritima}
SCOP: c.23.5.1 d.157.1.3
Length = 410
Score = 71.8 bits (176), Expect = 6e-15
Identities = 40/208 (19%), Positives = 77/208 (37%), Gaps = 38/208 (18%)
Query: 27 TLQGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHV 83
+G N Y++ +L+D + ++ E+I+ L ++++ + I HI+++H DH
Sbjct: 46 IPEGISYNAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEI--THIIVNHTEPDHS 103
Query: 84 GGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIH 143
G L + I D I + + F V + DG+ ++ G + +
Sbjct: 104 GSLPATLKTIGHDVEII----ASNFGKRLLEGFYGIKD-VTVVKDGEEREIGGKKFKFVM 158
Query: 144 TPG-HTTDHIVLKLEEENVVFSGDTI--LGEGTTVFSDLISYIES--------------- 185
TP H D +V + ++FS D + S +E
Sbjct: 159 TPWLHWPDTMV--TYLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGH 216
Query: 186 --------LRRIRSLKPDIIYPAHGPVV 205
++ SLK + P HG +
Sbjct: 217 YKNYILEGAEKLSSLKIKALLPGHGLIW 244
>1e5d_A Rubredoxin\:oxygen oxidoreductase; oxygenreductase, DIIRON-centre,
flavoproteins, lactamase-fold; HET: FMN; 2.5A
{Desulfovibrio gigas} SCOP: c.23.5.1 d.157.1.3
Length = 402
Score = 71.0 bits (174), Expect = 9e-15
Identities = 43/208 (20%), Positives = 76/208 (36%), Gaps = 37/208 (17%)
Query: 29 QGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
GT N Y++ + L DT + ++ E + + V++ + I +++V+ H DH G
Sbjct: 31 MGTTYNAYLV-EDEKTTLFDTVKAEYKGELLCGIASVIDPKKI--DYLVIQHLELDHAGA 87
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
L + E G + E+ F ++ VQ + G+ L + T+ T
Sbjct: 88 LPALIEAC-QPEKIFTSSLGQKAMESH---FHYKDWPVQVVKHGETLSLGKRTVTFYETR 143
Query: 146 G-HTTDHIVLKLEEENVVFSGDTI--LGEGTTVFSDLIS---YIESLRR----------- 188
H D +V +E V+ S D + FSD I ++R
Sbjct: 144 MLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPYAP 203
Query: 189 ----------IRSLKPDIIYPAHGPVVE 206
+ P+ I P HG +
Sbjct: 204 QTLKAIETLVGAGVAPEFICPDHGVIFR 231
>1ycg_A Nitric oxide reductase; DIIRON site, oxidoreductase; HET: FMN;
2.80A {Moorella thermoacetica} SCOP: c.23.5.1 d.157.1.3
PDB: 1ycf_A* 1ych_A*
Length = 398
Score = 71.0 bits (174), Expect = 1e-14
Identities = 42/216 (19%), Positives = 75/216 (34%), Gaps = 39/216 (18%)
Query: 27 TLQGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHV 83
T +GT N Y++ + L+DT E I LKQ+ + + +++V++H +DH
Sbjct: 30 THRGTTYNAYLI-VDDKTALVDTVYEPFKEELIAKLKQIKDPVKL--DYLVVNHTESDHA 86
Query: 84 GGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVP-ENKTVQTLTDGQLLKVEGATLRVI 142
G I E + PD A + T++ + + G + + +L I
Sbjct: 87 GAFPAIME-LCPD-AHVL---CTQRAFDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFI 141
Query: 143 HTPG-HTTDHIVLKLEEENVVFSGD--TILGEGTTVFSDLISYIES-------------- 185
P H D + + EE ++ D + F D +
Sbjct: 142 EAPMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMP 201
Query: 186 --------LRRIRSLKPDI--IYPAHGPVVEVGLSF 211
L I+ + I I P+HG +
Sbjct: 202 FSNLITKKLDEIQKINLAIKTIAPSHGIIWRKDPGR 237
>3dha_A N-acyl homoserine lactone hydrolase; zinc bimetallohydrolase,
quorum quenching; HET: C6L GOL; 0.95A {Bacillus
thuringiensis serovar kurstakorganism_taxid} PDB:
3dhb_A* 3dhc_A* 2a7m_A* 2br6_A 2btn_A
Length = 254
Score = 69.7 bits (171), Expect = 1e-14
Identities = 46/233 (19%), Positives = 84/233 (36%), Gaps = 56/233 (24%)
Query: 20 GMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHME------------------------Y 55
+ PG + Y+L T +L+DTG P+
Sbjct: 28 ALTPGKLLNLPVWCYLLETEEGPILVDTGMPESAVNNEGLFNGTFVEGQILPKMTEEDRI 87
Query: 56 IENLKQV-LNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQAT 114
+ LK+V + + +I+ SH H DH GG F + I + TE + A
Sbjct: 88 VNILKRVGYEPDDLL--YIISSHLHFDHAGGNGA-FTN-----TPII-VQRTEYEAALHR 138
Query: 115 D-FVPENKTVQTLTDGQLLKVEGAT-----LRVIHTPGHTTDHIVLKLE---EENVVFSG 165
+ ++ E L +EG +++++TPGH+ H L +E +V+ +
Sbjct: 139 EEYMKEC----ILPHLNYKIIEGDYEVVPGVQLLYTPGHSPGHQSLFIETEQSGSVLLTI 194
Query: 166 DTI-----LGEGTTVFS-DLISYIESLRRIRSL---KPDIIYPAHGPVVEVGL 209
D + D + S++R++ + + II+ H E
Sbjct: 195 DASYTKENFEDEVPFAGFDPELALSSIKRLKEVVKKEKPIIFFGHDIEQEKSC 247
>3aj3_A MLR6805 protein, 4-pyridoxolactonase; Zn-protein,
metallo-beta-lactamase, hydrolase; 1.58A {Mesorhizobium
loti} PDB: 3aj0_A
Length = 274
Score = 68.9 bits (169), Expect = 2e-14
Identities = 37/224 (16%), Positives = 70/224 (31%), Gaps = 51/224 (22%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHME----------------YIENLKQV-LNKESISLEHI 73
+ ++ R L+DTG L + L I +
Sbjct: 35 VYSILIEHAEGRFLIDTGYDYDHVMKVLPFEKPIQEKHQTIPGALGLLGLEPRDID--VV 92
Query: 74 VLSHWHNDHVGGLKD--------------IFEHINPDSATIWKFKGTEKDEAQATDFVPE 119
V SH+H DH GG K + P + + A+A +
Sbjct: 93 VNSHFHFDHCGGNKYFPHAKKICHRSEVPQACNPQPFEHLGYSDLSFSAEAAEARGATAQ 152
Query: 120 NKTVQTLTDGQLLKVEGAT-----LRVIHTPGHTTDHIVLKLE---EENVVFSGDTI--- 168
T + ++G +++I TPGH+ H L +E + ++F+ D
Sbjct: 153 LLEGTTRANSTFEGIDGDVDLARGVKLISTPGHSIGHYSLLVEFPRRKPILFTIDAAYTQ 212
Query: 169 ----LGEGTTVFSDLISYIESLRRIRSL---KPDIIYPAHGPVV 205
D ++ + S+R+++ L + +H
Sbjct: 213 KSLETLCQAAFHIDPVAGVNSMRKVKKLAEDHGAELMYSHDMDN 256
>1p9e_A Methyl parathion hydrolase; Zn containing; 2.40A {Pseudomonas SP}
SCOP: d.157.1.5
Length = 331
Score = 69.0 bits (169), Expect = 3e-14
Identities = 37/170 (21%), Positives = 64/170 (37%), Gaps = 26/170 (15%)
Query: 23 PGPMTLQGTNTYILGTGSRRLLLDTGE-PDHMEYIENLKQVLNKESISLE---HIVLSHW 78
P+ Y++ TGS+ +L+DTG + L L E I ++H
Sbjct: 90 KAPLET-SVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITHM 148
Query: 79 HNDHVGGLKDIFEHINPDSATI------WKFKGTEKDEAQATDFVPENK------TVQTL 126
H DHVGGL + P+ A + F ++ + +A D + ++
Sbjct: 149 HPDHVGGLMVGEQLAFPN-AVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPY 207
Query: 127 TD-GQLLKVEGAT-----LRVIHTPGHTTDHIVLKLE--EENVVFSGDTI 168
G+ G T ++ + + GHT H +E + + GD I
Sbjct: 208 VKAGKFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLI 257
>3esh_A Protein similar to metal-dependent hydrolase; structural genomics,
PSI-2, protein structure initiative; 2.50A
{Staphylococcus aureus subsp}
Length = 280
Score = 64.7 bits (158), Expect = 9e-13
Identities = 29/171 (16%), Positives = 63/171 (36%), Gaps = 25/171 (14%)
Query: 22 NPGPMTLQGTNTYILGTGSRRLLLDTG-----------EPDHMEYIENLKQVLNKESISL 70
N T+ ++ T L++D G ++ ++ L +++
Sbjct: 39 NERNQINLPTHPILIQTAQYNLIIDAGIGNGKLSEKQLRNFGVDEESHIIADLANYNLTP 98
Query: 71 E---HIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDF---VPENKTVQ 124
+ +++++H H DH GL D H ++A + E E A + +
Sbjct: 99 KDIDYVLMTHMHFDHAAGLTDQAGHAIFENAIHV-VQQDEWHEFIAPNIRSKSTYWDKNK 157
Query: 125 TLTDGQLLKVEGAT-----LRVIHTPGHTTDHIVLKLE--EENVVFSGDTI 168
+L+ E +++ H+ GH+ H ++ +E + V GD
Sbjct: 158 GDYSNKLILFEKHFEPVPGIKMQHSGGHSFGHTIITIESQGDKAVHMGDIF 208
>4efz_A Metallo-beta-lactamase family protein; structural genomics, seattle
structural genomics center for infectious disease,
ssgcid; 1.60A {Burkholderia pseudomallei}
Length = 298
Score = 64.7 bits (158), Expect = 9e-13
Identities = 43/207 (20%), Positives = 67/207 (32%), Gaps = 39/207 (18%)
Query: 30 GTNTYILGTGSRR--LLLD-------TGEPDHMEYIENLKQVLNKESISLEHIVLSHWHN 80
T +Y+L L+D + L + + ++ +H H
Sbjct: 16 CTISYLLFDSGSGECALIDSVLDYDPKSGRTRTASADQLIARVAALGARVRWLLETHVHA 75
Query: 81 DHVGG---LKD-------IFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQ 130
DH+ LK I H+ K A + L DG
Sbjct: 76 DHLSAAPYLKTRVGGEIAIGRHVTRVQDVFGKLFNAGPAFAHDGSQF-----DRLLDDGD 130
Query: 131 LLKVEGATLRVIHTPGHTTDHIVLKLEE--------ENVVFSGDTIL----GEGTTVFS- 177
L + ++R +HTPGHT + + E + F GDT+ G F
Sbjct: 131 TLALGALSIRAMHTPGHTPACMTYVVTEAHAAHDARDAAAFVGDTLFMPDYGTARCDFPG 190
Query: 178 -DLISYIESLRRIRSLKPD-IIYPAHG 202
D S S+R++ SL P +Y H
Sbjct: 191 GDARSLYRSIRKVLSLPPATRLYMCHD 217
>2r2d_A AGR_PTI_140P, Zn-dependent hydrolases; lactonase, N-acyl hompserine
lactone, DI-nuclear zinc center quenching, AIIB,
phosphate; HET: PO4; 1.75A {Agrobacterium tumefaciens}
Length = 276
Score = 62.9 bits (153), Expect = 4e-12
Identities = 39/218 (17%), Positives = 65/218 (29%), Gaps = 48/218 (22%)
Query: 31 TNTYILGTGSRRLLLDTG-------------------EPDHMEYIENLKQVLNKESISLE 71
+ Y++ +L DTG P NL + L + +S +
Sbjct: 43 VSAYLIQCTDATVLYDTGCHPECMGTNGRWPAQSQLNAPYIGASECNLPERLRQLGLSPD 102
Query: 72 ---HIVLSHWHNDHVGGLKDI-----------FEHINPDSATIWKFKGTEKDEAQATDFV 117
+VLSH HNDH G ++ F AT + +A
Sbjct: 103 DISTVVLSHLHNDHAGCVEYFGKSRLIAHEDEFATAVRYFATGDHSSPYIVKDIEAWLAT 162
Query: 118 PENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLE---EENVVFSGDTI-----L 169
P N + + + G L + GH + + L + + + D
Sbjct: 163 PRNWDLVGRDERERELAPGVNL-LNFGTGHASGMLGLAVRLEKQPGFLLVSDACYTATNY 221
Query: 170 GEGTT---VFSDLISYIESLRRIRSL---KPDIIYPAH 201
G V D I Y ++ IR + + H
Sbjct: 222 GPPARRAGVLHDTIGYDRTVSHIRQYAESRSLTVLFGH 259
>2p4z_A Metal-dependent hydrolases of the beta-lactamase superfamily II;
metal-dependent hydrolases of the beta-lactamase
superfamily hydrolase; 2.10A {Thermoanaerobacter
tengcongensis}
Length = 284
Score = 55.5 bits (133), Expect = 1e-09
Identities = 22/121 (18%), Positives = 48/121 (39%), Gaps = 8/121 (6%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI 93
+L G++ +++DTG+ ++ I+N + + ++ +VL+H H DH+GGLK + E
Sbjct: 36 LLLKKGNKEIVVDTGQSENF--IKNCGL-MGIDVGRIKKVVLTHGHYDHIGGLKGLLERN 92
Query: 94 NPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIV 153
I+ K + + + D + +I +
Sbjct: 93 PE--VKIYTHKEILNKKYA---MRKGGQFEEIGFDLSFYEKYKNNFVLIDKDAEIEEGFY 147
Query: 154 L 154
+
Sbjct: 148 V 148
>2i7t_A Cleavage and polyadenylation specificity factor 73 kDa subunit;
metallo-B-lactamase, PRE-mRNA processing, artemis, V(D)J
recombination; 2.10A {Homo sapiens} SCOP: d.157.1.10
PDB: 2i7v_A
Length = 459
Score = 51.5 bits (124), Expect = 5e-08
Identities = 29/160 (18%), Positives = 62/160 (38%), Gaps = 35/160 (21%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL------- 86
IL R+++LD G +E ++ L + + ++ +++SH+H DH G L
Sbjct: 28 IILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWFLQKT 87
Query: 87 ------------KDIFEHINPDSATIWKFKG-----TEKDEAQATDFVPENKTVQTLTDG 129
K I+ + D + TE D ++ D ++T+
Sbjct: 88 SFKGRTFMTHATKAIYRWLLSDYVKVSNISADDMLYTETDLEESMDK------IETINFH 141
Query: 130 QLLKVEGATLRVI---HTPGHTTDHIVLKLEEENVVFSGD 166
++ +V G H G ++++ ++++GD
Sbjct: 142 EVKEVAGIKFWCYHAGHVLGAA--MFMIEIAGVKLLYTGD 179
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.7 bits (113), Expect = 1e-06
Identities = 55/294 (18%), Positives = 84/294 (28%), Gaps = 131/294 (44%)
Query: 3 AKIPNVS-------QLSSRVI--RVLGMNPGPM--TLQGTNTYILG-------------- 37
IP +S QL+ V+ ++LG PG + L+G + G
Sbjct: 232 LSIP-ISCPLIGVIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWE 290
Query: 38 ---------------TGSR------------RLLLDT-----GEPDHMEYIENL--KQV- 62
G R +L D+ G P M I NL +QV
Sbjct: 291 SFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNLTQEQVQ 350
Query: 63 -----LNKE-------SISL----EHIVLSHWHNDHVG------GLKDIFEHI-NPDSAT 99
N ISL +++V+S G GL P
Sbjct: 351 DYVNKTNSHLPAGKQVEISLVNGAKNLVVS-------GPPQSLYGLNLTLRKAKAPSGLD 403
Query: 100 IWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHT------TDHIV 153
+ +E+ + F+P + +P H+ +D I
Sbjct: 404 QSRIPFSERKLKFSNRFLP-----------------------VASPFHSHLLVPASDLIN 440
Query: 154 LKLEEENVVFSGDTILGEGTTVF-----SDLISYIESLRRIRSLKPDII-YPAH 201
L + NV F+ I V+ SDL S+ + II P
Sbjct: 441 KDLVKNNVSFNAKDI---QIPVYDTFDGSDLRVLSGSI--SERIVDCIIRLPVK 489
Score = 37.3 bits (86), Expect = 0.003
Identities = 32/159 (20%), Positives = 52/159 (32%), Gaps = 54/159 (33%)
Query: 66 ESISLEHIVLSH------W---HNDHVGG--LKDIFEHINPDSATIWKFKGTEKDEAQAT 114
++ S + LSH L++ F I P+ G D+ T
Sbjct: 2 DAYSTRPLTLSHGSLEHVLLVPTASFFIASQLQEQFNKILPEPTE-----GFAADDEPTT 56
Query: 115 ---------DFVPENKTVQTLTDGQ---LLKV-----EGATLRV--IHTPGHTTDHIVLK 155
+V + V+ GQ +L + E L IH + K
Sbjct: 57 PAELVGKFLGYV--SSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHA-------LAAK 107
Query: 156 LEEENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKP 194
L +EN DT L + + +YI + RI + +P
Sbjct: 108 LLQEN-----DTTLVKTKELIK---NYITA--RIMAKRP 136
Score = 30.8 bits (69), Expect = 0.35
Identities = 35/199 (17%), Positives = 64/199 (32%), Gaps = 61/199 (30%)
Query: 53 MEYIENLKQVLNKESISLEHI---VLSHWHNDHVGGLKDIFEH------INPDSATIWKF 103
+ Y+ + V + + + L+ + N ++ G DI H + + T+ K
Sbjct: 65 LGYVSS--LVEPSKVGQFDQVLNLCLTEFENCYLEG-NDI--HALAAKLLQENDTTLVKT 119
Query: 104 KGTEKD--EAQATDFVPENKTVQT-LTD--------------GQLLKVEGAT------LR 140
K K+ A+ P +K + L GQ G T LR
Sbjct: 120 KELIKNYITARIMAKRPFDKKSNSALFRAVGEGNAQLVAIFGGQ-----GNTDDYFEELR 174
Query: 141 VIHT--PGHTTDHIVL---KLEEE-NVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKP 194
++ D I L E + + +G +++ ++E+ S P
Sbjct: 175 DLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGL----NILEWLEN----PSNTP 226
Query: 195 DIIYPAHGPVVEVGLSFSL 213
D Y P+ S L
Sbjct: 227 DKDYLLSIPI-----SCPL 240
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase
fold; 2.70A {Pseudomonas SP}
Length = 668
Score = 47.3 bits (111), Expect = 1e-06
Identities = 39/228 (17%), Positives = 60/228 (26%), Gaps = 56/228 (24%)
Query: 32 NTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
N I+ S +L+DT ++ Q K+ I +V SH H DH GG + I
Sbjct: 134 NMTIIEGDSGLVLIDTLTTAETARAALDLYFQHRPKKPIV--AVVYSHSHIDHFGGARGI 191
Query: 90 -----------------------------------------FEHINPDSATIWKFKGTEK 108
+ P A G K
Sbjct: 192 IDEADVKAGKVKVFAPSGFMEHAVSENILAGTAMARRGQYQSGVMVPRGAQAQVDSGLFK 251
Query: 109 DEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGD- 166
A V + V+G L T G + + L + V+ + D
Sbjct: 252 TTATNATNTLVAPNVLIEKPYERHTVDGVELEFQLTLGSEAPSDMNIYLPQFKVLNTADN 311
Query: 167 ---------TILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVV 205
T G YI++ + D++ H V
Sbjct: 312 APPAMHNLLTPRGAEVRDAKAWAGYIDASLEKYGDRTDVLIQQHNWPV 359
>1zkp_A Hypothetical protein BA1088; zinc binding protein, structural
genomics, PSI, protein STRU initiative; 1.50A {Bacillus
anthracis str} SCOP: d.157.1.9
Length = 268
Score = 44.6 bits (106), Expect = 6e-06
Identities = 34/164 (20%), Positives = 59/164 (35%), Gaps = 22/164 (13%)
Query: 16 IRVLGMNPGPMTLQGTNT--YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHI 73
+ V+G G G T Y+ RLL+D G L++ + I +
Sbjct: 27 MTVVGFW-GGFPEAGEATSGYLFEHDGFRLLVDCGSGVLA----QLQKYITPSDID--AV 79
Query: 74 VLSHWHNDHVGGLKDIFEHINPDSATIWKF--------KGTEKDEAQATDFVPENKTVQT 125
VLSH+H+DHV + + SAT + E T +
Sbjct: 80 VLSHYHHDHVADIGVLQYARLITSATKGQLPELPIYGHTFDENGFHSLTH--EPHTKGIP 137
Query: 126 LTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEEN--VVFSGDT 167
+ L++ ++ + T H +++ N VV+S D+
Sbjct: 138 YNPEETLQIGPFSISFLKTV-HPVTCFAMRITAGNDIVVYSADS 180
>2ycb_A Beta-CAsp RNAse, cleavage and polyadenylation specificity factor;
hydrolase, KH, metallo-beta-lactamase; 3.10A
{Methanothermobacter thermautotrophicusorganism_taxid}
Length = 636
Score = 44.6 bits (106), Expect = 1e-05
Identities = 30/165 (18%), Positives = 57/165 (34%), Gaps = 40/165 (24%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESI-----SLEHIVLSHWHNDHVGGL-- 86
L T + R+LLD G ++ ++ SL+ ++++H H DH G L
Sbjct: 196 LYLQTPNSRVLLDCG--VNVAGGDDKNSYPYLNVPEFTLDSLDAVIITHAHLDHSGFLPY 253
Query: 87 ----------------KDIFEHINPDSATIWKFKG-----TEKDEAQATDFVPENKTVQT 125
+D+ + D I + K ++ T
Sbjct: 254 LYHYGYDGPVYCTAPTRDLMTLLQLDHIDIAHREDEPLPFNVKHVKKSVKH------TIT 307
Query: 126 LTDGQLLKV-EGATLRVI---HTPGHTTDHIVLKLEEENVVFSGD 166
L G++ + L + H G H+ + + N+V++GD
Sbjct: 308 LDYGEVTDIAPDIRLTLHNAGHILGSAMAHLHIGDGQHNMVYTGD 352
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A
{Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB:
2cfz_A* 2cg2_A 2cg3_A*
Length = 658
Score = 44.2 bits (103), Expect = 1e-05
Identities = 29/229 (12%), Positives = 62/229 (27%), Gaps = 57/229 (24%)
Query: 31 TNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
N + S +++DT E + + L + I ++ SH H DH GG++
Sbjct: 123 ANITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIR--TVIYSHAHADHFGGVRG 180
Query: 89 I-----------------------------------------FEHINPDSATIWKFKGTE 107
+ + P
Sbjct: 181 LVEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIG 240
Query: 108 KDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGD 166
K A+ + + +G+ L ++G +TPG + + + L + + +
Sbjct: 241 KGLARGPLSLLAPTRLIE-GEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAE 299
Query: 167 ----------TILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVV 205
T+ G YI + ++++ H
Sbjct: 300 NVVGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPR 348
>2xr1_A Cleavage and polyadenylation specificity factor 1 subunit;
hydrolase, metallo-beta-lactamase, beta-CAsp, RNA
processing; 2.59A {Methanosarcina mazei}
Length = 640
Score = 43.4 bits (103), Expect = 3e-05
Identities = 32/161 (19%), Positives = 56/161 (34%), Gaps = 33/161 (20%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNK-ESISLEHI---VLSHWHNDHVGGL--- 86
++L T R+L+D G ++ EN+ L E L I +++H H DH G +
Sbjct: 200 FLLSTPESRILIDCG--VNVGSDENMTPYLYVPEVFPLNQIDAVIVTHAHLDHQGLVPLL 257
Query: 87 ---------------KDIFEHINPDSATIWKFKGTEK--DEAQATDFVPENKTVQTLTDG 129
+D+ + D + +G + + + K L
Sbjct: 258 FKYGYEGPVYCTPPTRDLMVLLQLDYIDVAAKEGKKIPYESGMVAKTL---KHTIPLDYE 314
Query: 130 QLLKV-EGATLRVI---HTPGHTTDHIVLKLEEENVVFSGD 166
++ + L H G H + NVVF+GD
Sbjct: 315 EVTDIAPDIKLTFHNAGHILGSAISHFHIGDGLHNVVFTGD 355
>3af5_A Putative uncharacterized protein PH1404; archaeal CPSF, beta-CAsp
family, KH domain, ribonuclease, ME beta-lactamase
superfamily, archaea; 2.60A {Pyrococcus horikoshii} PDB:
3af6_A*
Length = 651
Score = 43.1 bits (102), Expect = 3e-05
Identities = 25/168 (14%), Positives = 51/168 (30%), Gaps = 40/168 (23%)
Query: 34 YILGTGSRRLLLDTG--------EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
++ T +L+D G + + + L+ I+++H H DH G
Sbjct: 205 LLVQTDESFVLVDFGVNVAMLNDPYKAFPHFDAPEFQYVLREGLLDAIIITHAHLDHCGM 264
Query: 86 L-------------------KDIFEHINPDSATIWKFKG-----TEKDEAQATDF---VP 118
L +D+ + D I + G +D + +
Sbjct: 265 LPYLFRYNLFDGPIYTTPPTRDLMVLLQKDFIEIQQSNGQDPLYRPRDIKEVIKHTITLD 324
Query: 119 ENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGD 166
+ ++ L + A H G H+ + N+ +GD
Sbjct: 325 YGEVRD-ISPDIRLTLHNAG----HILGSAIVHLHIGNGLHNIAITGD 367
>3g1p_A Protein PHNP; C-P lyase, phosphodiesterase, phosphonate
utilization, alkylphosphonate uptake; 1.40A
{Escherichia coli} PDB: 3p2u_A
Length = 258
Score = 41.5 bits (98), Expect = 7e-05
Identities = 13/55 (23%), Positives = 23/55 (41%), Gaps = 9/55 (16%)
Query: 35 ILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
++ L+D G D + + S + +L+H+H DHV GL +
Sbjct: 43 VVKFNDAITLIDAGLHDLADR-WSPG--------SFQQFLLTHYHMDHVQGLFPL 88
>3h3e_A Uncharacterized protein TM1679; structural genomics, surface
entropy reduction, ISFI, beta- lactamase superfamily,
PSI-2; 2.75A {Thermotoga maritima}
Length = 267
Score = 41.3 bits (96), Expect = 1e-04
Identities = 15/50 (30%), Positives = 27/50 (54%), Gaps = 5/50 (10%)
Query: 42 RLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFE 91
+L DTG+ D ++N ++ L + + +++SH H DH GGL +
Sbjct: 39 SVLFDTGKSDVF--LKNARK-LGIDLP--KDVLISHGHYDHAGGLLYLSG 83
>3iek_A Ribonuclease TTHA0252; metallo beta lactamase fold, endonuclease,
hydrolase, metal- nuclease, RNA-binding, rRNA
processing; HET: FLC; 2.05A {Thermus thermophilus} PDB:
2dkf_A* 3iel_A* 3iem_A* 2zdf_A* 3idz_A* 2zdd_A* 3ie0_A*
2zde_A* 3ie1_A* 2zdw_A* 3a4y_A* 2yvd_A* 3ie2_A*
Length = 431
Score = 40.2 bits (95), Expect = 2e-04
Identities = 31/161 (19%), Positives = 60/161 (37%), Gaps = 43/161 (26%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESI-----SLEHIVLSHWHNDHVGGL-- 86
++L G RR+LLD G ++ N ++ ++L+H H DHVG L
Sbjct: 17 HLLLAGGRRVLLDCG--MFQGK----EEARNHAPFGFDPKEVDAVLLTHAHLDHVGRLPK 70
Query: 87 ----------------KDIFEHINPDSATIWKFKGTEK---DEAQATDFVPENKTVQTLT 127
+ E + D+ + ++ + + ++ L
Sbjct: 71 LFREGYRGPVYATRATVLLMEIVLEDALKV-----MDEPFFGPEDVEEAL---GHLRPLE 122
Query: 128 DGQLLKVEGATLRVIHTPGHT--TDHIVLKLEEENVVFSGD 166
G+ L++ +L GH + +V + E +V+SGD
Sbjct: 123 YGEWLRLGALSLAFGQA-GHLPGSAFVVAQGEGRTLVYSGD 162
>2i7x_A Protein CFT2; polyadenylation, metallo-B-lactamase, PRE-mRNA
processing, artemis, V(D)J recombination, double-strand
break repair; 2.50A {Saccharomyces cerevisiae} SCOP:
d.157.1.10
Length = 717
Score = 39.4 bits (91), Expect = 5e-04
Identities = 10/53 (18%), Positives = 20/53 (37%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
++ + LL+D G E + K ++ I+LS + +G
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPEIDVIILSQPTIECLGAH 70
>3md7_A Beta-lactamase-like; ssgcid, hydrolase, structural genomics,
structural genomics center for infectious disease; HET:
5GP TLA; 1.27A {Brucella melitensis biovar abortus} PDB:
3qh8_A* 3py6_A* 3py5_A*
Length = 293
Score = 35.4 bits (82), Expect = 0.008
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 7/51 (13%)
Query: 39 GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
+ +++DTG PD Q+++ L+ V +H H DH+ G+ D+
Sbjct: 76 NNTVVVIDTG-PDFRM------QMIDSGVHMLDAAVYTHPHADHIHGIDDL 119
>2az4_A Hypothetical protein EF2904; structural genomics, PSI, protein STR
initiative, midwest center for structural genomics,
MCSG, U function; 2.00A {Enterococcus faecalis} SCOP:
d.157.1.10
Length = 429
Score = 35.0 bits (81), Expect = 0.015
Identities = 22/180 (12%), Positives = 51/180 (28%), Gaps = 52/180 (28%)
Query: 30 GTNTYILGTGSRRLLLDTG------------------------------EPDHMEYIENL 59
G + + D G +P
Sbjct: 19 GGTVIEVAYKDAHIFFDFGTEFRPELDLPDDHIETLINNRLVPELKDLYDPRLGYEYHGA 78
Query: 60 KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHI----NPDSATIWKFKGTEKDEAQATD 115
+ + + LSH H DH + + + ++ I + D +
Sbjct: 79 EDKDYQ----HTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSP 134
Query: 116 FVPENKTVQ--TLTDGQLLKVEGATLRVIHTPGHTTDH-------IVLKLEEENVVFSGD 166
F +N T + L ++KV ++ ++ DH ++++ + + ++GD
Sbjct: 135 FEEKNFTREMIGLNKNDVIKVGEISVEIVP-----VDHDAYGASALLIRTPDHFITYTGD 189
>2e7y_A TRNAse Z; tRNA maturation, metallo-beta-lactaMSe, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; 1.97A {Thermotoga
maritima} SCOP: d.157.1.7 PDB: 1ww1_A
Length = 280
Score = 34.6 bits (80), Expect = 0.016
Identities = 15/63 (23%), Positives = 25/63 (39%), Gaps = 19/63 (30%)
Query: 35 ILGTGS-----------RRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHV 83
I+G R+L D GE + L + + +++ L+H H DH+
Sbjct: 3 IIGFSKALFSTWIYYSPERILFDAGE--------GVSTTLGSKVYAFKYVFLTHGHVDHI 54
Query: 84 GGL 86
GL
Sbjct: 55 AGL 57
>3zq4_A Ribonuclease J 1, RNAse J1; hydrolase, RNA maturation; 3.00A
{Bacillus subtilis}
Length = 555
Score = 34.0 bits (79), Expect = 0.027
Identities = 18/78 (23%), Positives = 33/78 (42%), Gaps = 20/78 (25%)
Query: 30 GTNTYILGTGSRRLLLDTG----EPDH---------MEYIENLKQVLNKESISLEHIVLS 76
G NTY + +L+D G E + Y+ N++ I + + ++
Sbjct: 21 GKNTYAVQFQDEIVLIDAGIKFPEDELLGIDYVIPDYTYLVK-----NEDKI--KGLFIT 73
Query: 77 HWHNDHVGGLKDIFEHIN 94
H H DH+GG+ + +N
Sbjct: 74 HGHEDHIGGIPYLLRQVN 91
>3jxp_A Coenzyme PQQ synthesis protein B; alpha-beta protein, PQQ
biosynthesis, transport, biosyntheti; 2.20A {Pseudomonas
putida} PDB: 1xto_A
Length = 321
Score = 33.9 bits (77), Expect = 0.028
Identities = 12/64 (18%), Positives = 21/64 (32%), Gaps = 4/64 (6%)
Query: 34 YILGTGSRRLLLDTGEPD---HMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIF 90
+ G +L + PD ++ ++ + IVL DH GL +
Sbjct: 45 ALSDDGVHWILCNAS-PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR 103
Query: 91 EHIN 94
E
Sbjct: 104 EGCP 107
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 33.0 bits (74), Expect = 0.038
Identities = 12/47 (25%), Positives = 15/47 (31%), Gaps = 20/47 (42%)
Query: 60 KQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGT 106
KQ L K L+ LK ++ DSA K T
Sbjct: 19 KQALKK----LQ------------ASLK-LYA---DDSAPALAIKAT 45
>3zwf_A Zinc phosphodiesterase ELAC protein 1; beta-lactamase, hydrolase,
metal-binding, tRNA processing, zinc-binding,
catabolism; 1.70A {Homo sapiens}
Length = 368
Score = 33.7 bits (77), Expect = 0.038
Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 5/62 (8%)
Query: 25 PMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVG 84
P +G + +L L D GE + + + + I ++H H DH
Sbjct: 13 PSPTRGASAVVLRCEGECWLFDCGE-GTQTQLMKSQLKAGR----ITKIFITHLHGDHFF 67
Query: 85 GL 86
GL
Sbjct: 68 GL 69
>2cbn_A Ribonuclease Z; phosphodiesterase beta lactamase tRNAse Z,
hydrolase, metal- binding, endonuclease, tRNA
processing, zinc; 2.9A {Escherichia coli} SCOP:
d.157.1.7
Length = 306
Score = 33.1 bits (76), Expect = 0.045
Identities = 18/69 (26%), Positives = 27/69 (39%), Gaps = 17/69 (24%)
Query: 35 ILGTGS-----RR----LLLDTGEPDHMEYI-----ENLKQVLNKESIS---LEHIVLSH 77
LGT + R +LL+ P E + L + + L+ I +SH
Sbjct: 6 FLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHTAFNPGKLDKIFISH 65
Query: 78 WHNDHVGGL 86
H DH+ GL
Sbjct: 66 LHGDHLFGL 74
>2bib_A CBPE, teichoic acid phosphorylcholine esterase/ choline protein;
choline-binding protein, PCE, phosphorylcholine estera
hydrolase; HET: PC BTB; 1.92A {Streptococcus pneumoniae}
SCOP: b.109.1.1 d.157.1.8 PDB: 1wra_A*
Length = 547
Score = 33.5 bits (76), Expect = 0.047
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIEN-LKQVLNKESIS-LEHIVLSHWHNDHVGGLKDIFE 91
+ G+ SR + E + + + + + L + S+ L+ I+++H H+DH+G + ++
Sbjct: 40 FPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELSVQKLDFILVTHTHSDHIGNVDELLS 99
Query: 92 HINPD 96
D
Sbjct: 100 TYPVD 104
>1y44_A Ribonuclease Z; zinc-dependent metal hydrolase, hydrolase; HET:
MES; 2.10A {Bacillus subtilis} SCOP: d.157.1.7 PDB:
2fk6_A*
Length = 320
Score = 32.8 bits (75), Expect = 0.058
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 11/55 (20%)
Query: 35 ILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESIS---LEHIVLSHWHNDHVGGL 86
+L L D GE + + +I +E I ++H H DHV GL
Sbjct: 26 LLEERRSVWLFDCGE--------ATQHQMLHTTIKPRKIEKIFITHMHGDHVYGL 72
>3bk2_A RNAse J, metal dependent hydrolase; endoribonuclease,
exoribonuclease, metallo-beta-lactamase; HET: U5P;
2.10A {Thermus thermophilus} PDB: 3bk1_A* 3t3o_A*
3t3n_A*
Length = 562
Score = 32.5 bits (75), Expect = 0.083
Identities = 17/70 (24%), Positives = 27/70 (38%), Gaps = 20/70 (28%)
Query: 30 GTNTYILGTGSRRLLLDTG----EPDH---------MEYIENLKQVLNKESISLEHIVLS 76
G N + +LD G E ++Y+ ++ I + VL+
Sbjct: 29 GKNITVFRFRDEIFVLDGGLAFPEEGMPGVDLLIPRVDYLIE-----HRHKI--KAWVLT 81
Query: 77 HWHNDHVGGL 86
H H DH+GGL
Sbjct: 82 HGHEDHIGGL 91
>2wyl_A L-ascorbate-6-phosphate lactonase ULAG; hydrolase; 2.59A
{Escherichia coli} PDB: 2wym_A*
Length = 360
Score = 29.9 bits (67), Expect = 0.54
Identities = 21/135 (15%), Positives = 43/135 (31%), Gaps = 44/135 (32%)
Query: 70 LEHIVLSHWHNDHVGG--LKDIFEHINPD--------SATIWKFKGTEKDEAQATDFVPE 119
++ ++ +H HNDH+ + ++ D +W G VP+
Sbjct: 110 IDAVLATHDHNDHIDVNVAAAVMQNCADDVPFIGPKTCVDLWIGWG-----------VPK 158
Query: 120 NKTVQTLTDGQLLKVEGAT---------LRVIHTP------GHTTDH-------IVLKLE 157
+ + + G ++KV+ +I P G D + K
Sbjct: 159 ERCIV-VKPGDVVKVKDIEIHALDAFDRTALITLPADQKAAGVLPDGMDDRAVNYLFKTP 217
Query: 158 EENVVFSGDTILGEG 172
++ SGD+
Sbjct: 218 GGSLYHSGDSHYSNY 232
>2ggo_A 401AA long hypothetical glucose-1-phosphate thymidylyltransferase;
beta barrel; 1.80A {Sulfolobus tokodaii} PDB: 2ggq_A*
Length = 401
Score = 28.7 bits (65), Expect = 1.3
Identities = 10/27 (37%), Positives = 14/27 (51%), Gaps = 2/27 (7%)
Query: 158 EENVVFSGDTILGEGTTVFSDLISYIE 184
E+NV G I+ E + S +YIE
Sbjct: 236 EDNVKIKGKVIIEEDAEIKSG--TYIE 260
>1vjn_A Zn-dependent hydrolase of metallo-beta-lactamase superfamily
TM0207; metallo-hydrolase/oxidoreductase fold,
structural genomics; 2.00A {Thermotoga maritima} SCOP:
d.157.1.4
Length = 220
Score = 28.4 bits (64), Expect = 1.4
Identities = 19/103 (18%), Positives = 28/103 (27%), Gaps = 37/103 (35%)
Query: 72 HIVLSHWHNDHVGG--LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDG 129
+ SH H DH +K F I+ A
Sbjct: 52 VVTESHQHFDHNAHHLVKGNFRVIDRPGAYTVNG-------------------------- 85
Query: 130 QLLKVEGATLRVIHTPGHTTDH-----IVLKLEEENVVFSGDT 167
+K++G + H P H + V + E V GD
Sbjct: 86 --VKIKG--VETFHDPSHGRERGKNIVFVFEGEGIKVCHLGDL 124
>3aek_A Light-independent protochlorophyllide reductase S; iron/sulfur
cluster, oxidoreductase, bacteriochlorophyll
biosynthesis; HET: PMR; 2.30A {Rhodobacter capsulatus}
PDB: 3aeq_A* 3aes_A* 3aer_A* 3aet_A 3aeu_A
Length = 437
Score = 28.7 bits (63), Expect = 1.7
Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 4/44 (9%)
Query: 169 LGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHG---PVVEVGL 209
L T + ++ L R ++ PD+ G P+ G
Sbjct: 354 LPSNTAL-TEGQDLEAQLDRHEAINPDLTVCGLGLANPLEAKGH 396
>3bv6_A Metal-dependent hydrolase; metallo protein, beta-lactamase like
fold, MCSG, structural PSI-2, protein structure
initiative; 1.80A {Vibrio cholerae o1 biovar eltor}
Length = 379
Score = 28.4 bits (63), Expect = 1.9
Identities = 18/136 (13%), Positives = 40/136 (29%), Gaps = 45/136 (33%)
Query: 70 LEHIVLSHWHNDHVGG--LKDIFEHINPD--------SATIWKFKGTEKDEAQATDFVPE 119
++ ++ SH H DH+ + ++ +W G VP+
Sbjct: 134 IDAVLASHDHADHIDVNVAAAVLQNCGEHVKFIGPQACVDLWLGWG-----------VPQ 182
Query: 120 NKTVQTLTDGQLLKVEGATLRVI---HTPGHTTDHI--------------------VLKL 156
+ + G +L++ +RV+ T +++
Sbjct: 183 ERCIV-AKVGDVLEIGDVKIRVLDSFDRTALVTLPKGVSSYDKAILDGMDERAVNYLIET 241
Query: 157 EEENVVFSGDTILGEG 172
+V SGD+
Sbjct: 242 SGGSVYHSGDSHYSNY 257
>2p41_A Type II methyltransferase; vizier, viral enzymes involved in
replication, dengue virus methyltransferase, structural
genomics; HET: G1G SAH CIT; 1.80A {Dengue virus 2} SCOP:
c.66.1.25 PDB: 2p1d_A* 1l9k_A* 2p3o_A* 2p3q_A* 2p40_A*
2p3l_A* 1r6a_A*
Length = 305
Score = 28.0 bits (62), Expect = 2.1
Identities = 15/78 (19%), Positives = 34/78 (43%), Gaps = 10/78 (12%)
Query: 5 IPNVSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLN 64
+ +V+ +S +I M T + LG+G+R + +++ P+ + ++++
Sbjct: 238 VSSVNMISRMLINRFTMRHKKATYEPD--VDLGSGTRNIGIESETPNLDIIGKRIEKIKQ 295
Query: 65 KESISLEHIVLSHWHNDH 82
EH + WH D
Sbjct: 296 ------EH--ETSWHYDQ 305
>3kl7_A Putative metal-dependent hydrolase; structural genomics, JOI for
structural genomics, JCSG; 2.30A {Parabacteroides
distasonis atcc 8503}
Length = 235
Score = 27.6 bits (62), Expect = 2.6
Identities = 16/107 (14%), Positives = 34/107 (31%), Gaps = 22/107 (20%)
Query: 72 HIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQL 131
I+++H H DH+ + + I + ++K + V +N
Sbjct: 68 IILITHEHGDHLD--PKAIQAVEKSDTEIIANENSQKKLGKGK--VLKNG-------DTD 116
Query: 132 LKVEGATLRVI---HTPGHT-TDH-------IVLKLEEENVVFSGDT 167
+ + + +T H +L + V +GDT
Sbjct: 117 TSISYMKIEAVPAYNTTPGRDKYHPRHRDNGYILTFDGLRVYIAGDT 163
>3q9k_A Lactoperoxidase, LPO; bovine lactoperoxidase, oxidoreductase,
phenyl isothiocyanat iodide, PEG, edman reagent; HET:
SEP HEM NAG; 1.70A {Bos taurus} PDB: 2ips_A* 2nqx_A*
2pum_A* 2qpk_A* 2qqt_A* 2qrb_A* 2pt3_A* 3eri_A* 3gc1_A*
3gcj_A* 3gck_A* 3gcl_A* 3i6n_A* 3bxi_A* 3krq_A* 3ogw_A*
3py4_A* 3nyh_A* 3ql6_A* 3r4x_A* ...
Length = 595
Score = 27.6 bits (60), Expect = 3.7
Identities = 22/98 (22%), Positives = 31/98 (31%), Gaps = 13/98 (13%)
Query: 9 SQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVL----- 63
+ +R L G M N G L + +P E+I +V
Sbjct: 196 EPSLASRLRNLSSPLGLM---AVNQEAWDHGLAYLPFNNKKPSPCEFINTTARVPCFLAG 252
Query: 64 ---NKESISLE--HIVLSHWHNDHVGGLKDIFEHINPD 96
E I L H +L HN LK + H N +
Sbjct: 253 DFRASEQILLATAHTLLLREHNRLARELKKLNPHWNGE 290
>4eoz_B Cullin-3, CUL-3; E3 ubiquitin ligase, nucleus, protein binding;
2.40A {Homo sapiens} PDB: 4apf_B
Length = 364
Score = 26.8 bits (58), Expect = 6.1
Identities = 15/88 (17%), Positives = 36/88 (40%), Gaps = 12/88 (13%)
Query: 10 QLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESIS 69
+L SRV L + ++Y+ G + + + ++Y + L + ++
Sbjct: 284 KLFSRVPNGL-----KTMCECMSSYLREQGKALVSEEGEGKNPVDYRQGLDDLKSR---- 334
Query: 70 LEHIVLSHWHNDH--VGGLKDIFEH-IN 94
+ +L ++ND + FE+ +N
Sbjct: 335 FDRFLLESFNNDRLFKQTIAGDFEYFLN 362
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR,
immune system; 1.50A {Eptatretus burgeri}
Length = 208
Score = 26.6 bits (59), Expect = 6.2
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 75 LSHWHNDHVGGLKDIFEHINPDSAT 99
LS W N H G +++ + PDSA
Sbjct: 170 LSEWINKHSGVVRNSAGSVAPDSAK 194
>3tlw_A GLR4197 protein, GLIC; Cys-loop receptor family, membrane protein,
transport protei; HET: LMT; 2.60A {Gloeobacter
violaceus} PDB: 3uu4_A* 3uub_A* 3tlv_A* 3uu6_A* 3uu5_A*
3uu3_A* 3tlu_A* 3uu8_A* 3tls_A* 3tlt_A* 3p4w_A* 3p50_A*
3eam_A* 3ehz_A 2xq4_A 2xq5_A 2xq6_A 2xq3_A 2xq8_A 2xqa_A
...
Length = 321
Score = 26.5 bits (59), Expect = 6.8
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 146 GHTTDHIVLKLEEENVVFSGDTILGE-----------------GTTVFSDLISYIESLRR 188
T +IVL ++ E V + D L + S L + + R
Sbjct: 138 SVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQLR-ISR 196
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein
binding, plasma; 1.70A {Listeria monocytogenes} PDB:
3rfj_A
Length = 272
Score = 26.1 bits (58), Expect = 8.0
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 75 LSHWHNDHVGGLKDIFEHINPDSAT 99
LS W N H G +++ + PDSA
Sbjct: 227 LSEWINKHSGVVRNSAGSVAPDSAK 251
>3igq_A GLR4197 protein; plgic Cys-loop, membrane protein, transport
protein; 2.30A {Gloeobacter violaceus}
Length = 201
Score = 26.1 bits (58), Expect = 8.3
Identities = 11/60 (18%), Positives = 18/60 (30%), Gaps = 18/60 (30%)
Query: 146 GHTTDHIVLKLEEENVVFSGDTILGE-----------------GTTVFSDLISYIESLRR 188
T +IVL ++ E V + D L + S L + + R
Sbjct: 134 SVDTRNIVLAVDLEKVGKNDDVFLTGWDIESFTAVVKPANFALEDRLESKLDYQL-RISR 192
>2zoo_A Probable nitrite reductase; electron transfer, electron transport,
heme, iron, binding, oxidoreductase, transport; HET: SUC
HEM; 1.95A {Pseudoalteromonas haloplanktis}
Length = 442
Score = 26.4 bits (58), Expect = 8.8
Identities = 8/43 (18%), Positives = 13/43 (30%), Gaps = 2/43 (4%)
Query: 62 VLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFK 104
+ N S + H + H G P + + FK
Sbjct: 74 LSNHPSSKMPHNI--DLHAVTGPGGGAESSFTAPGHTSTFNFK 114
>4f06_A Extracellular ligand-binding receptor; PSI-biology, MCSG, midwest
center for structural genomics, transporter; HET: MSE
PHB; 1.30A {Rhodopseudomonas palustris} PDB: 4evs_A*
Length = 371
Score = 26.2 bits (58), Expect = 9.1
Identities = 8/46 (17%), Positives = 18/46 (39%), Gaps = 11/46 (23%)
Query: 158 EENVVFSGDTILGE-----GTTVFSDLISYIESLRRIRSLKPDIIY 198
++ G ++ TT F ++ RI++ D+I+
Sbjct: 160 KKTFEAEGGKVVEAVRMPLSTTDFGPIMQ------RIKNSGADMIF 199
>3rqw_A ELIC pentameric ligand gated ION channel from ERW chrysanthemi;
membrane, transport protein; HET: ACH MES; 2.91A
{Dickeya dadantii} PDB: 3rqu_A* 3uq4_A 3uq5_A 3uq7_A
2vl0_A 2yks_A
Length = 322
Score = 26.2 bits (58), Expect = 9.2
Identities = 4/68 (5%), Positives = 14/68 (20%), Gaps = 4/68 (5%)
Query: 146 GHTTDHIVLKLEEENVVFSGDTILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVV 205
+ + + + + E + + IR + P
Sbjct: 134 SYNNQQLRFSDIQVYTENIDNEEIDE----WWIRGKASTHISDIRYDHLSSVQPNQNEFS 189
Query: 206 EVGLSFSL 213
+ +
Sbjct: 190 RITVRIDA 197
>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase,
oxidoreductase; 1.85A {Rhodotorula graminis} PDB:
2w2l_A* 2w2l_D* 2w2k_B
Length = 348
Score = 26.1 bits (58), Expect = 9.3
Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)
Query: 77 HWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDE--AQATDFVPENKTVQTLT---DGQL 131
+D + FE I + T FK +++ + T + + L
Sbjct: 14 RHLDDLWSDFQQKFEVIPANLTTHDGFKQALREKRYGDFEAIIKLAVENGTESYPWNADL 73
Query: 132 LKVEGATLRVIHTPGHTTDHI 152
+ ++L+V G D +
Sbjct: 74 ISHLPSSLKVFAAAGAGFDWL 94
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.135 0.391
Gapped
Lambda K H
0.267 0.0839 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,320,406
Number of extensions: 198968
Number of successful extensions: 785
Number of sequences better than 10.0: 1
Number of HSP's gapped: 654
Number of HSP's successfully gapped: 100
Length of query: 216
Length of database: 6,701,793
Length adjustment: 90
Effective length of query: 126
Effective length of database: 4,188,903
Effective search space: 527801778
Effective search space used: 527801778
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (24.8 bits)