RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1547
(216 letters)
>d2aioa1 d.157.1.1 (A:23-311) Zn metallo-beta-lactamase {Xanthomonas
maltophilia [TaxId: 40324]}
Length = 266
Score = 91.2 bits (225), Expect = 5e-23
Identities = 33/199 (16%), Positives = 61/199 (30%), Gaps = 17/199 (8%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
++ T +LLD G P ++ + + L I+LSH H DH G + ++
Sbjct: 36 DLTALLVQTPDGAVLLDGGMPQMASHLLDNMKARGVTPRDLRLILLSHAHADHAGPVAEL 95
Query: 90 FE------HINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIH 143
N +SA + G++ P + + DG+++ V G
Sbjct: 96 KRRTGAKVAANAESAVLLARGGSDDLHFGDGITYPPANADRIVMDGEVITVGGIVFTAHF 155
Query: 144 TPGHTTDHIVLKLEEENVVFSGDTILGEG-----------TTVFSDLISYIESLRRIRSL 192
GHT + + + Y S +R+L
Sbjct: 156 MAGHTPGSTAWTWTDTRNGKPVRIAYADSLSAPGYQLQGNPRYPHLIEDYRRSFATVRAL 215
Query: 193 KPDIIYPAHGPVVEVGLSF 211
D++ H +
Sbjct: 216 PCDVLLTPHPGASNWDYAA 234
>d1ko3a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, VIM-2 [TaxId: 287]}
Length = 230
Score = 88.9 bits (219), Expect = 2e-22
Identities = 38/206 (18%), Positives = 77/206 (37%), Gaps = 17/206 (8%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKES 67
+ Q++ V + + +N I+ G LL+DT L ++ +
Sbjct: 15 LYQIADGVWSHIATQSFDGAVYPSNGLIVRDGDELLLIDTA-WGAKNTAALLAEIEKQIG 73
Query: 68 ISLEHIVLSHWHNDHVGGLKDIFEHINPDSAT--IWKFKGTEKDEAQATDFVPENKTVQT 125
+ + V +H+H+D VGG+ + A+ + E +E + +
Sbjct: 74 LPVTRAVSTHFHDDRVGGVDVLRAAGVATYASPSTRRLAEVEGNEIPTHSLEGLSSSGDA 133
Query: 126 LTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTV-----FSDLI 180
+ G + H+TD++V+ + +V++ G I T +DL
Sbjct: 134 VRFGPV-------ELFYPGAAHSTDNLVVYVPSASVLYGGCAIYELSRTSAGNVADADLA 186
Query: 181 SYIESLRRIRSLKPD--IIYPAHGPV 204
+ S+ RI+ P+ + P HG
Sbjct: 187 EWPTSIERIQQHYPEAQFVIPGHGLP 212
>d1k07a_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Fluoribacter
gormanii, (Legionella gormanii) FEZ-1 [TaxId: 464]}
Length = 262
Score = 88.1 bits (217), Expect = 8e-22
Identities = 32/197 (16%), Positives = 74/197 (37%), Gaps = 20/197 (10%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
+Y++ T +L+++ ++ I+ + L + + +++SH H DH G + I
Sbjct: 23 DLASYLIVTPRGNILINSDLEANVPMIKASIKKLGFKFSDTKILLISHAHFDHAAGSELI 82
Query: 90 FEHINPD----SATIWKFKGTEKDEAQATDF----VPENKTVQTLTDGQLLKVEGATLRV 141
+ + K + + ++ + L DG+ +++ G L
Sbjct: 83 KQQTKAKYMVMDEDVSVILSGGKSDFHYANDSSTYFTQSTVDKVLHDGERVELGGTVLTA 142
Query: 142 IHTPGHTTDHIVLKLEEEN------VVFSGDTILGEGTTVF------SDLISYIESLRRI 189
TPGHT ++ ++ V G + G + Y S++ +
Sbjct: 143 HLTPGHTRGCTTWTMKLKDHGKQYQAVIIGSIGVNPGYKLVDNITYPKIAEDYKHSIKVL 202
Query: 190 RSLKPDIIYPAHGPVVE 206
S++ DI +H + +
Sbjct: 203 ESMRCDIFLGSHAGMFD 219
>d1vmea2 d.157.1.3 (A:1-250) ROO-like flavoprotein TM0755,
N-terminal domain {Thermotoga maritima [TaxId: 2336]}
Length = 250
Score = 86.5 bits (213), Expect = 2e-21
Identities = 34/201 (16%), Positives = 71/201 (35%), Gaps = 34/201 (16%)
Query: 32 NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDIF 90
N Y++ +L+D + ++ E+I+ L ++++ + I HI+++H DH G L
Sbjct: 41 NAYLVKLNGANVLIDGWKGNYAKEFIDALSKIVDPKEI--THIIVNHTEPDHSGSLPATL 98
Query: 91 EHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTD 150
+ I + + K V + DG+ ++ G + + TP
Sbjct: 99 KTIGH-----DVEIIASNFGKRLLEGFYGIKDVTVVKDGEEREIGGKKFKFVMTPWLHWP 153
Query: 151 HIVLKLEEENVVFSGDTI--LGEGTTVFSDLISYIE-----------------------S 185
+ + ++FS D + S +E
Sbjct: 154 D-TMVTYLDGILFSCDVGGGYLLPEILDDSNESVVERYLPHVTKYIVTVIGHYKNYILEG 212
Query: 186 LRRIRSLKPDIIYPAHGPVVE 206
++ SLK + P HG + +
Sbjct: 213 AEKLSSLKIKALLPGHGLIWK 233
>d2gmna1 d.157.1.1 (A:29-292) Zn metallo-beta-lactamase
{Bradyrhizobium japonicum [TaxId: 375]}
Length = 264
Score = 87.0 bits (214), Expect = 2e-21
Identities = 35/193 (18%), Positives = 72/193 (37%), Gaps = 17/193 (8%)
Query: 29 QGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKD 88
G Y++ T +L+DT P I++ L + ++ I+ +H H DH GG +
Sbjct: 25 DGIAVYVIKTSQGLILMDTAMPQSTGMIKDNIAKLGFKVADIKLILNTHAHLDHTGGFAE 84
Query: 89 IFEHINPDSATIWKFKGTEKDEAQATDFVPEN------KTVQTLTDGQLLKVEGATLRVI 142
I + + K + D E+ K + + +G + + TL
Sbjct: 85 IKKETGAQLVAGERDKPLLEGGYYPGDEKNEDLAFPAVKVDRAVKEGDRVTLGDTTLTAH 144
Query: 143 HTPGHTTDHIVLKLEEENVVFSGDTIL-GEGTTVFSDLISY----------IESLRRIRS 191
TPGH+ ++ ++ + + GT + L+ + + ++
Sbjct: 145 ATPGHSPGCTSWEMTVKDGKEDREVLFFCSGTVALNRLVGQPTYAGIVDDYRATFAKAKA 204
Query: 192 LKPDIIYPAHGPV 204
+K D++ H V
Sbjct: 205 MKIDVLLGPHPEV 217
>d1e5da2 d.157.1.3 (A:2-250) Rubredoxin oxygen:oxidoreductase (ROO),
N-terminal domain {Desulfovibrio gigas [TaxId: 879]}
Length = 249
Score = 85.8 bits (211), Expect = 4e-21
Identities = 42/210 (20%), Positives = 79/210 (37%), Gaps = 37/210 (17%)
Query: 27 TLQGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHV 83
+ GT N Y++ + L DT + ++ E + + V++ + I +++V+ H DH
Sbjct: 28 SPMGTTYNAYLVE-DEKTTLFDTVKAEYKGELLCGIASVIDPKKI--DYLVIQHLELDHA 84
Query: 84 GGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIH 143
G L + E P+ +A + F ++ VQ + G+ L + T+
Sbjct: 85 GALPALIEACQPEKIFTSS----LGQKAMESHFHYKDWPVQVVKHGETLSLGKRTVTFYE 140
Query: 144 TP-GHTTDHIVLKLEEENVVFSGDTILGEGTT--VFSDLI-------------------- 180
T H D +V +E V+ S D FSD I
Sbjct: 141 TRMLHWPDSMVSWFADEKVLISNDIFGQNIAASERFSDQIPVHTLERAMREYYANIVNPY 200
Query: 181 --SYIESLRRIRS--LKPDIIYPAHGPVVE 206
++++ + + P+ I P HG +
Sbjct: 201 APQTLKAIETLVGAGVAPEFICPDHGVIFR 230
>d1ycga2 d.157.1.3 (A:2-250) Nitric oxide reductase N-terminal
domain {Moorella thermoacetica [TaxId: 1525]}
Length = 249
Score = 81.2 bits (199), Expect = 2e-19
Identities = 39/210 (18%), Positives = 70/210 (33%), Gaps = 37/210 (17%)
Query: 27 TLQGT--NTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLEHIVLSHWHNDHV 83
T +GT N Y++ + L+DT E I LKQ+ + + +++V++H +DH
Sbjct: 30 THRGTTYNAYLIV-DDKTALVDTVYEPFKEELIAKLKQIKDPVKL--DYLVVNHTESDHA 86
Query: 84 GGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIH 143
G I E + ++ + + + G + + +L I
Sbjct: 87 GAFPAIMELCPDAHVLCTQRA----FDSLKAHYSHIDFNYTIVKTGTSVSLGKRSLTFIE 142
Query: 144 TP-GHTTDHIVLKLEEENVVFSGDTILGEGTT--VFSDLISYIE---------------- 184
P H D + + EE ++ D T F D +
Sbjct: 143 APMLHWPDSMFTYVPEEALLLPNDAFGQHIATSVRFDDQVDAGLIMDEAAKYYANILMPF 202
Query: 185 ------SLRRIRS--LKPDIIYPAHGPVVE 206
L I+ L I P+HG +
Sbjct: 203 SNLITKKLDEIQKINLAIKTIAPSHGIIWR 232
>d1x8ha_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Aeromonas
hydrophila, CphA [TaxId: 644]}
Length = 228
Score = 80.0 bits (196), Expect = 5e-19
Identities = 30/191 (15%), Positives = 69/191 (36%), Gaps = 17/191 (8%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
N+ + ++ E + +K+V K + ++ +++H D GG
Sbjct: 22 QENSMVYFGAKGVTVVGATWTPDTARELHKLIKRVSRKPVL---EVINTNYHTDRAGGNA 78
Query: 88 DIFEHINPDSATIWKFKGTEKDEAQATDF--------VPENKTVQTLTDGQLLKVEGATL 139
+T + D A+ F + + ++ +
Sbjct: 79 YWKSIGAKVVSTRQTRDLMKSDWAEIVAFTRKGLPEYPDLPLVLPNVVHDGDFTLQEGKV 138
Query: 140 RVIH-TPGHTTDHIVLKLEEENVVFSGDTILGE-GTTVFSDLISYIESLRRIRSLKPD-- 195
R + P HT D I + +E V++ G + + G F+D+ +Y ++L R++++K
Sbjct: 139 RAFYAGPAHTPDGIFVYFPDEQVLYGGCILKEKLGNLSFADVKAYPQTLERLKAMKLPIK 198
Query: 196 IIYPAHGPVVE 206
+ H +
Sbjct: 199 TVIGGHDSPLH 209
>d2q0ia1 d.157.1.14 (A:1-298) Quinolone signal response protein PqsE
{Pseudomonas aeruginosa [TaxId: 287]}
Length = 298
Score = 78.5 bits (192), Expect = 4e-18
Identities = 40/217 (18%), Positives = 75/217 (34%), Gaps = 29/217 (13%)
Query: 19 LGMNPGPMTLQGTNTYILGTGSRRLLL-DTGEPDHMEYIENLKQVLNKESISLEHIVLSH 77
L + + ++L G L + G E + + + + +++H
Sbjct: 10 LDDDLCLLGDVQVPVFLLRLGEASWALVEGGISRDAELVWADLCRWVADPSQVHYWLITH 69
Query: 78 WHNDHVGGLKDIFEH-------INPDSATIWKFKGTEKDEAQATD------------FVP 118
H DH G L + + + WK + + +
Sbjct: 70 KHYDHCGLLPYLCPRLPNVQVLASERTCQAWKSESAVRVVERLNRQLLRAEQRLPEACAW 129
Query: 119 ENKTVQTLTDGQ-LLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTV-- 175
+ V+ + DG+ L L+VI GH+ DH+V +F GD +
Sbjct: 130 DALPVRAVADGEWLELGPRHRLQVIEAHGHSDDHVVFYDVRRRRLFCGDALGEFDEAEGV 189
Query: 176 -----FSDLISYIESLRRIRSLKPD-IIYPAHGPVVE 206
F D+ +Y+ESL R++ L + P HG ++
Sbjct: 190 WRPLVFDDMEAYLESLERLQRLPTLLQLIPGHGGLLR 226
>d1znba_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacteroides
fragilis [TaxId: 817]}
Length = 230
Score = 76.2 bits (186), Expect = 1e-17
Identities = 35/216 (16%), Positives = 75/216 (34%), Gaps = 21/216 (9%)
Query: 2 SAKIPN---VSQLSSRVIRVLG-MNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIE 57
S KI + ++QLS +V + + +N I+ + LLDT + +
Sbjct: 2 SVKISDDISITQLSDKVYTYVSLAEIEGWGMVPSNGMIVINNHQAALLDTP-INDAQTET 60
Query: 58 NLKQVLNKESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFV 117
+ V + + + +HWH D +GGL + + A +
Sbjct: 61 LVNWVADSLHAKVTTFIPNHWHGDCIGGLGYLQKKGVQSYAN--------QMTIDLAKEK 112
Query: 118 PENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVF-SGDTILGEGTTV- 175
TD + ++G L+ + G ++ + G + T
Sbjct: 113 GLPVPEHGFTDSLTVSLDGMPLQCYYLGGGHATDNIVVWLPTENILFGGCMLKDNQATSI 172
Query: 176 ----FSDLISYIESLRRIRSLKPD--IIYPAHGPVV 205
+D+ ++ ++L ++++ P + P HG
Sbjct: 173 GNISDADVTAWPKTLDKVKAKFPSARYVVPGHGDYG 208
>d1jjta_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Pseudomonas
aeruginosa, IMP-1 [TaxId: 287]}
Length = 220
Score = 75.0 bits (183), Expect = 3e-17
Identities = 33/202 (16%), Positives = 76/202 (37%), Gaps = 15/202 (7%)
Query: 8 VSQLSSRVIRVLG-MNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKE 66
+ +L V + + ++ + L+DT + E L +
Sbjct: 7 IEKLDEGVYVHTSFEEVNGWGVVPKHGLVVLVNAEAYLIDTPFTA--KDTEKLVTWFVER 64
Query: 67 SISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTL 126
++ + SH+H+D GG++ + P A+ + + + + +
Sbjct: 65 GYKIKGSISSHFHSDSTGGIEWLNSRSIPTYAS--------ELTNELLKKDGKVQATNSF 116
Query: 127 TDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVF--SDLISYIE 184
+ V+ PGHT D++V+ L E ++F G I G +++ ++ +
Sbjct: 117 SGVNYWLVKNKIEVFYPGPGHTPDNVVVWLPERKILFGGCFIKPYGLGNLGDANIEAWPK 176
Query: 185 SLRRIRSLKPD--IIYPAHGPV 204
S + ++S ++ P+H V
Sbjct: 177 SAKLLKSKYGKAKLVVPSHSEV 198
>d1mqoa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Bacillus cereus
[TaxId: 1396]}
Length = 221
Score = 75.0 bits (183), Expect = 3e-17
Identities = 40/212 (18%), Positives = 80/212 (37%), Gaps = 21/212 (9%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNK 65
+SQL+ V + +N +L T +L+D+ + E IE +++ K
Sbjct: 12 ISQLNKNVWVHTELGSFNGEAVPSNGLVLNTSKGLVLVDSSWDDKLTKELIEMVEKKFQK 71
Query: 66 ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQT 125
+ ++++H H D +GG+K + E +T + + +
Sbjct: 72 R---VTDVIITHAHADRIGGIKTLKERGIKAHSTALTA--------ELAKKNGYEEPLGD 120
Query: 126 LTDGQLLKVEGATLRVIHT-PGHTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDL 179
L LK + + GHT D+IV+ L + N++ G + + +
Sbjct: 121 LQTVTNLKFGNMKVETFYPGKGHTEDNIVVWLPQYNILVGGCLVKSTSAKDLGNVADAYV 180
Query: 180 ISYIESLRRIRSLKPD--IIYPAHGPVVEVGL 209
+ S+ + + + P HG V + GL
Sbjct: 181 NEWSTSIENVLKRYRNINAVVPGHGEVGDKGL 212
>d2p97a1 d.157.1.12 (A:1-200) Hypothetical protein Ava3068 {Anabaena
variabilis [TaxId: 1172]}
Length = 200
Score = 74.2 bits (181), Expect = 4e-17
Identities = 33/187 (17%), Positives = 59/187 (31%), Gaps = 35/187 (18%)
Query: 30 GTNTYILGTGSRRLLLDTG--EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLK 87
N + +L+D +++E+L V IVL++ HV K
Sbjct: 22 DFNGFAWIRPEGNILIDPVALSNHDWKHLESLGGV--------VWIVLTNSD--HVRSAK 71
Query: 88 DIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGH 147
+I + A A + L+DG L+V+ G
Sbjct: 72 EIADQTYTKIAGPV-----------AEKENFPIYCDRWLSDGD---ELVPGLKVMELQGS 117
Query: 148 TTDHIVLKLEEENVVFSGDTILGEGT--------TVFSDLISYIESLRRIRSLKPD-IIY 198
T + L EE + +GD + + + S+RR+ +L+ +
Sbjct: 118 KTPGELALLLEETTLITGDLVRAYRAGGLEILPDEKLMNKQKVVASVRRLAALEKVEAVL 177
Query: 199 PAHGPVV 205
G V
Sbjct: 178 VGDGWSV 184
>d1ztca1 d.157.1.11 (A:1-207) Hypothetical protein TM0894
{Thermotoga maritima [TaxId: 2336]}
Length = 207
Score = 72.4 bits (176), Expect = 2e-16
Identities = 31/192 (16%), Positives = 62/192 (32%), Gaps = 10/192 (5%)
Query: 23 PGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDH 82
PG + + L RR+++D G M+ +E L + ++ +H H DH
Sbjct: 15 PGRLNAHFSTVVYLEHKDRRIIIDPGNLSSMDELEEKFSELGISPDDITDVLFTHVHLDH 74
Query: 83 VGGLKDIFEH-INPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRV 141
+ K + + + + ++V
Sbjct: 75 IFNSVLFENATFYVHEVYKTKNYLSFGTIVGRIYSKVISSWKNVVLLKGEESLFDEKVKV 134
Query: 142 IHTPGHTTDHIVLKLEEEN---VVFSGDTILGEGTTVF----SDLISYIESLRRIRSLKP 194
HTP H +H+ L+ EN V+ +GD + + L R+ +
Sbjct: 135 FHTPWHAREHLSFLLDTENAGRVLITGDITPNRLSYYDIIKGYGSVQVKNFLDRV--GRI 192
Query: 195 DIIYPAHGPVVE 206
D++ H ++
Sbjct: 193 DLLVFPHDAPLK 204
>d1xm8a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 254
Score = 73.0 bits (178), Expect = 3e-16
Identities = 44/184 (23%), Positives = 68/184 (36%), Gaps = 23/184 (12%)
Query: 28 LQGTNTYILGTGSRR--LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
L+ YIL ++D E + + L + +L +I+ +H H DH GG
Sbjct: 9 LKDNYAYILHDEDTGTVGVVDPSEAEP------IIDSLKRSGRNLTYILNTHHHYDHTGG 62
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
++ + +KD D L DG G + V+ TP
Sbjct: 63 NLELKDRYGAKVIGSAM----DKDRIPGID--------MALKDGDKWMFAGHEVHVMDTP 110
Query: 146 GHTTDHIVLKLEEENVVFSGDTILGEGTTVFSDLIS--YIESLRRIRSLKPD-IIYPAHG 202
GHT HI L +F+GDT+ + + SL++I SL D IY H
Sbjct: 111 GHTKGHISLYFPGSRAIFTGDTMFSLSCGKLFEGTPKQMLASLQKITSLPDDTSIYCGHE 170
Query: 203 PVVE 206
+
Sbjct: 171 YTLS 174
>d1m2xa_ d.157.1.1 (A:) Zn metallo-beta-lactamase {Chryseobacterium
meningosepticum, carbapenemase BLAB-1 [TaxId: 238]}
Length = 219
Score = 67.4 bits (163), Expect = 2e-14
Identities = 27/209 (12%), Positives = 62/209 (29%), Gaps = 15/209 (7%)
Query: 8 VSQLSSRVIRVLGMNPGPMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKES 67
+ +L + N T N L T +++D ++ ++ K
Sbjct: 4 IEKLKDNLYVYTTYNTFNGTKYAANAVYLVTDKGVVVIDCP-WGEDKFKSFTDEIYKKHG 62
Query: 68 ISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLT 127
+ + +H H+D GGL+ + T+ ++
Sbjct: 63 KKVIMNIATHSHDDRAGGLEYFGKIGAK-------TYSTKMTDSILAKENKPRAQYTFDN 115
Query: 128 DGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDTILGEGTTVF-----SDLISY 182
+ + GHT D++V+ +E V+ G I + + + +
Sbjct: 116 NKSFKVGKSEFQVYYPGKGHTADNVVVWFPKEKVLVGGCIIKSADSKDLGYIGEAYVNDW 175
Query: 183 IESLRRIRSLKPD--IIYPAHGPVVEVGL 209
+S+ I+ + H +
Sbjct: 176 TQSVHNIQQKFSGAQYVVAGHDDWKDQRS 204
>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas
aeruginosa [TaxId: 287]}
Length = 505
Score = 62.1 bits (150), Expect = 5e-12
Identities = 29/227 (12%), Positives = 59/227 (25%), Gaps = 55/227 (24%)
Query: 32 NTYILGTGSRRLLLDTGEPDHM--EYIENLKQVLNKESISLEHIVLSHWHNDHVGGL--- 86
N + S +++DT E + + L + I ++ SH H DH GG+
Sbjct: 105 NITFIRGDSGWIVVDTLTTPATARAAYELVSRELGERPIR--TVIYSHAHADHFGGVRGL 162
Query: 87 ----------------KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENK--------- 121
E ++ T +
Sbjct: 163 VEPQQVASGAVQIIAPAGFMEAAIKENVLAGNAMMRRATYQYGTQLPKGPQGQVDMAIGK 222
Query: 122 ------------TVQTLTDGQLLKVEGATLRVIHTPG-HTTDHIVLKLEEENVVFSGD-- 166
T +G+ L ++G +TPG + + + L + + +
Sbjct: 223 GLARGPLSLLAPTRLIEGEGEDLVLDGVPFTFQNTPGTESPAEMNIWLPRQKALLMAENV 282
Query: 167 --------TILGEGTTVFSDLISYIESLRRIRSLKPDIIYPAHGPVV 205
T+ G YI + ++++ H
Sbjct: 283 VGTLHNLYTLRGAEVRDALGWSKYINQALHRFGRQAEVMFAVHNWPR 329
>d1p9ea_ d.157.1.5 (A:) Methyl parathion hydrolase {Pseudomonas sp.
WBC-3 [TaxId: 165468]}
Length = 294
Score = 61.1 bits (147), Expect = 7e-12
Identities = 43/222 (19%), Positives = 73/222 (32%), Gaps = 36/222 (16%)
Query: 22 NPGPMTLQGTNTYILGTGSRRLLLDTGEPDHM-EYIENLKQVLNKESISLE---HIVLSH 77
P+ Y++ TGS+ +L+DTG + L L E I ++H
Sbjct: 54 QKAPLET-SVTGYLVNTGSKLVLVDTGAAGLFGPTLGRLAANLKAAGYQPEQVDEIYITH 112
Query: 78 WHNDHVGGLKDIFEHINPDSATIWKF------------KGTEKDEAQATDFVPENKTVQT 125
H DHVGGL + P++ DE++
Sbjct: 113 MHPDHVGGLMVGEQLAFPNAVVRADQKEADFWLSQTNLDKAPDDESKGFFKGAMASLNPY 172
Query: 126 LTDGQLLKVEGAT-----LRVIHTPGHTTDHIVLKLEEE--NVVFSGDTILGEG------ 172
+ G+ G T ++ + + GHT H +E + + GD IL
Sbjct: 173 VKAGKFKPFSGNTDLVPGIKALASHGHTPGHTTYVVESQGQKLALLGDLILVAAVQFDDP 232
Query: 173 ---TTVFSDLISYIESLRRIRSLKPD---IIYPAHGPVVEVG 208
T + SD S ++ + +I +H +G
Sbjct: 233 SVTTQLDSDSKSVAVERKKAFADAAKGGYLIAASHLSFPGIG 274
>d2qeda1 d.157.1.2 (A:1-251) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Salmonella typhimurium [TaxId: 90371]}
Length = 251
Score = 55.3 bits (132), Expect = 5e-10
Identities = 39/174 (22%), Positives = 65/174 (37%), Gaps = 24/174 (13%)
Query: 28 LQGTNTYILGTGSRRLLL-DTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL 86
Q ++L R ++ D GE + + + + E I L+H H+DHVGG+
Sbjct: 9 FQDNYIWVLTNDEGRCVIVDPGEAAP------VLKAIAEHKWMPEAIFLTHHHHDHVGGV 62
Query: 87 KDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTPG 146
K++ +H + + + DG ++V G + TPG
Sbjct: 63 KELLQHFPQMTVYGPAET-------------QDKGATHLVGDGDTIRVLGEKFTLFATPG 109
Query: 147 HTTDHIVLKLEEENVVFSGDTILGEGTTVF--SDLISYIESLRRIRSLKPDIIY 198
HT H+ +F GDT+ G +SL +I SL D +
Sbjct: 110 HTLGHVC--YFSRPYLFCGDTLFSGGCGRLFEGTPSQMYQSLMKINSLPDDTLI 161
>d2dkfa1 d.157.1.10 (A:1-431) Putative RNA-degradation protein
TTHA0252 {Thermus thermophilus [TaxId: 274]}
Length = 431
Score = 50.4 bits (119), Expect = 5e-08
Identities = 33/152 (21%), Positives = 59/152 (38%), Gaps = 15/152 (9%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
+ ++L G RR+LLD G E N + ++ ++L+H H DHVG L +
Sbjct: 13 TGSAHLLLAGGRRVLLDCGMFQGKEEARNHAP-FGFDPKEVDAVLLTHAHLDHVGRLPKL 71
Query: 90 FEH-----INPDSATIWKFKGTEKDEAQ--------ATDFVPENKTVQTLTDGQLLKVEG 136
F + AT+ + +D + D ++ L G+ L++
Sbjct: 72 FREGYRGPVYATRATVLLMEIVLEDALKVMDEPFFGPEDVEEALGHLRPLEYGEWLRLGA 131
Query: 137 ATLRVIHTPGHTTDH-IVLKLEEENVVFSGDT 167
+L +V + E +V+SGD
Sbjct: 132 LSLAFGQAGHLPGSAFVVAQGEGRTLVYSGDL 163
>d2i7ta1 d.157.1.10 (A:9-459) Cleavage and polyadenylation
specificity factor subunit 3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 451
Score = 49.8 bits (117), Expect = 7e-08
Identities = 16/67 (23%), Positives = 33/67 (49%)
Query: 30 GTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGLKDI 89
G + IL R+++LD G +E ++ L + + ++ +++SH+H DH G L
Sbjct: 16 GRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAEIDLLLISHFHLDHCGALPWF 75
Query: 90 FEHINPD 96
+ +
Sbjct: 76 LQKTSFK 82
>d2i7xa1 d.157.1.10 (A:1-422,A:626-717) Cleavage factor two protein
2, CFT2 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 514
Score = 48.3 bits (114), Expect = 2e-07
Identities = 23/195 (11%), Positives = 58/195 (29%), Gaps = 46/195 (23%)
Query: 34 YILGTGSRRLLLDTG----EPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGGL--- 86
++ + LL+D G + + + I+ ++V+ + ++ I+LS + +G
Sbjct: 18 SVVRFDNVTLLIDPGWNPSKVSYEQCIKYWEKVIPE----IDVIILSQPTIECLGAHSLL 73
Query: 87 --------------------KDIFEHINPDSATIWKFKG-------TEKDEAQATDFVPE 119
++ DS G +D + D +
Sbjct: 74 YYNFTSHFISRIQVYATLPVINLGRVSTIDSYASAGVIGPYDTNKLDLEDIEISFDHIVP 133
Query: 120 NKTVQTLT-DGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSG-----DTILGEGT 173
K Q + + + PG + + E +V++ +
Sbjct: 134 LKYSQLVDLRSRYDGLTLLAYNAGVCPGGS--IWCISTYSEKLVYAKRWNHTRDNILNAA 191
Query: 174 TVFSDLISYIESLRR 188
++ + +L R
Sbjct: 192 SILDATGKPLSTLMR 206
>d1qh5a_ d.157.1.2 (A:) Glyoxalase II (hydroxyacylglutathione
hydrolase) {Human (Homo sapiens) [TaxId: 9606]}
Length = 260
Score = 46.1 bits (108), Expect = 7e-07
Identities = 27/154 (17%), Positives = 52/154 (33%), Gaps = 27/154 (17%)
Query: 28 LQGTNTYILGTGSRR--LLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHNDHVGG 85
L Y++ + ++D +P + K + L ++ +H H DH GG
Sbjct: 9 LTDNYMYLVIDDETKEAAIVDPVQPQKVV------DAARKHGVKLTTVLTTHHHWDHAGG 62
Query: 86 LKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQTLTDGQLLKVEGATLRVIHTP 145
+ + + + +T L+V ++ + TP
Sbjct: 63 NEKLVKLESGLKVYGGDD--------------RIGALTHKITHLSTLQVGSLNVKCLATP 108
Query: 146 GHTTDHIVLKLEEEN-----VVFSGDTILGEGTT 174
HT+ HI + + VF+GDT+ G
Sbjct: 109 CHTSGHICYFVSKPGGSEPPAVFTGDTLFVAGCG 142
>d2e7ya1 d.157.1.7 (A:1-280) Ribonuclease Z (RNase Z) {Thermotoga
maritima [TaxId: 2336]}
Length = 280
Score = 42.4 bits (98), Expect = 1e-05
Identities = 17/74 (22%), Positives = 30/74 (40%), Gaps = 12/74 (16%)
Query: 26 MTLQGTNTYILGT----GSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIVLSHWHND 81
M + G + + T R+L D GE + L + + +++ L+H H D
Sbjct: 1 MNIIGFSKALFSTWIYYSPERILFDAGE--------GVSTTLGSKVYAFKYVFLTHGHVD 52
Query: 82 HVGGLKDIFEHINP 95
H+ GL + N
Sbjct: 53 HIAGLWGVVNIRNN 66
>d1zkpa1 d.157.1.9 (A:1-244) Hypothetical protein BA1088 (BAS1016)
{Bacillus anthracis [TaxId: 1392]}
Length = 244
Score = 40.9 bits (94), Expect = 4e-05
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 7/90 (7%)
Query: 16 IRVLGMNPG-PMTLQGTNTYILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLEHIV 74
+ V+G G P + T+ Y+ RLL+D G + + + +V
Sbjct: 3 MTVVGFWGGFPEAGEATSGYLFEHDGFRLLVDCGSGVLAQLQKYITPSDID------AVV 56
Query: 75 LSHWHNDHVGGLKDIFEHINPDSATIWKFK 104
LSH+H+DHV + + SAT +
Sbjct: 57 LSHYHHDHVADIGVLQYARLITSATKGQLP 86
>d2az4a1 d.157.1.10 (A:56-238) Hypothetical protein EF2904
{Enterococcus faecalis [TaxId: 1351]}
Length = 183
Score = 39.2 bits (90), Expect = 1e-04
Identities = 17/115 (14%), Positives = 40/115 (34%), Gaps = 8/115 (6%)
Query: 63 LNKESISLEHIVLSHWHNDHVGGLKDIFEHIN----PDSATIWKFKGTEKDEAQATDFVP 118
+ + LSH H DH + + + ++ I + D + F
Sbjct: 23 AEDKDYQHTAVFLSHAHLDHSRMINYLDPAVPLYTLKETKMILNSLNRKGDFLIPSPFEE 82
Query: 119 EN--KTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKL--EEENVVFSGDTIL 169
+N + + L ++KV ++ ++ L + + + ++GD L
Sbjct: 83 KNFTREMIGLNKNDVIKVGEISVEIVPVDHDAYGASALLIRTPDHFITYTGDLRL 137
>d1wraa1 d.157.1.8 (A:30-334) Teichoic acid phosphorylcholine
esterase Pce (LytD), N-terminal domain {Streptococcus
pneumoniae [TaxId: 1313]}
Length = 305
Score = 37.7 bits (86), Expect = 6e-04
Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 22/90 (24%)
Query: 29 QGTNTYIL-GTGSRRLLLDTGEPDHMEY--------------------IENLKQVLNKES 67
+G + I+ + ++DTGE + + + L + S
Sbjct: 11 EGGSDAIILESNGHFAMVDTGEDYDFPDGSDSRYPWREGIETSYKHVLTDRVFRRLKELS 70
Query: 68 IS-LEHIVLSHWHNDHVGGLKDIFEHINPD 96
+ L+ I+++H H+DH+G + ++ D
Sbjct: 71 VQKLDFILVTHTHSDHIGNVDELLSTYPVD 100
>d1xtoa_ d.157.1.6 (A:) Coenzyme PQQ synthesis protein B, PqqB
{Pseudomonas putida [TaxId: 303]}
Length = 304
Score = 37.1 bits (84), Expect = 0.001
Identities = 12/66 (18%), Positives = 21/66 (31%), Gaps = 4/66 (6%)
Query: 34 YILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISL---EHIVLSHWHNDHVGGLKDIF 90
+ G +L + PD ++ + ++ IVL DH GL +
Sbjct: 43 ALSDDGVHWILCNAS-PDIRAQLQAFAPMQPARALRDTGINAIVLLDSQIDHTTGLLSLR 101
Query: 91 EHINPD 96
E
Sbjct: 102 EGCPHQ 107
>d1y44a1 d.157.1.7 (A:1-307) Ribonuclease Z (RNase Z) {Bacillus
subtilis [TaxId: 1423]}
Length = 307
Score = 26.2 bits (56), Expect = 2.8
Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 9/72 (12%)
Query: 16 IRVLGM-NPGPMTLQGTNTY---ILGTGSRRLLLDTGEPDHMEYIENLKQVLNKESISLE 71
+ LG P + + +L L D GE + + + +E
Sbjct: 3 LLFLGTGAGIPAKARNVTSVALKLLEERRSVWLFDCGEATQHQMLHT-----TIKPRKIE 57
Query: 72 HIVLSHWHNDHV 83
I ++H H DHV
Sbjct: 58 KIFITHMHGDHV 69
>d1v3va1 b.35.1.2 (A:1-112,A:295-329) Leukotriene b4
12-hydroxydehydrogenase/prostaglandin 15-keto reductase
{Guinea pig (Cavia porcellus) [TaxId: 10141]}
Length = 147
Score = 25.7 bits (56), Expect = 3.4
Identities = 14/81 (17%), Positives = 33/81 (40%), Gaps = 4/81 (4%)
Query: 101 WKFKGTEKDEAQATDFVPENKTVQTLTDGQ-LLKVEGATL---RVIHTPGHTTDHIVLKL 156
W K + + +DF + + L +G+ LL+ ++ I + +++
Sbjct: 7 WTLKKHFQGKPTQSDFELKTVELPPLKNGEVLLEALFLSVDPYMRIASKRLKEGAVMMGQ 66
Query: 157 EEENVVFSGDTILGEGTTVFS 177
+ VV S ++ G+ V +
Sbjct: 67 QVARVVESKNSAFPAGSIVLA 87
>d1s3la_ d.159.1.7 (A:) Putative phosphodiesterase MJ0936
{Methanococcus jannaschii [TaxId: 2190]}
Length = 165
Score = 25.6 bits (55), Expect = 3.6
Identities = 15/114 (13%), Positives = 44/114 (38%), Gaps = 5/114 (4%)
Query: 55 YIENLKQVLNK-ESISLEHIVLSHWHNDHVGGLKDIFEHINPDSATIWKFKGTEKDEAQA 113
++ N+++ + ++E + H L I E N ++ I + + + +
Sbjct: 12 HLPNIRKAIEIFNDENVETV----IHCGDFVSLFVIKEFENLNANIIATYGNNDGERCKL 67
Query: 114 TDFVPENKTVQTLTDGQLLKVEGATLRVIHTPGHTTDHIVLKLEEENVVFSGDT 167
+++ + + D ++++ + H + + +K +VV G T
Sbjct: 68 KEWLKDINEENIIDDFISVEIDDLKFFITHGHHQSVLEMAIKSGLYDVVIYGHT 121
>d2cbna1 d.157.1.7 (A:1-305) Ribonuclease Z (RNase Z) {Escherichia
coli [TaxId: 562]}
Length = 305
Score = 25.9 bits (55), Expect = 4.1
Identities = 19/93 (20%), Positives = 29/93 (31%), Gaps = 10/93 (10%)
Query: 16 IRVLGM-NPGPMTLQGTNTYIL----GTGSRRLLLDTGEPDHMEYIENLKQVLNKESISL 70
+ LG P + +L T S L D GE + + L
Sbjct: 3 LIFLGTSAGVPTRTRNVTAILLNLQHPTQSGLWLFDCGEGTQHQLLHT-----AFNPGKL 57
Query: 71 EHIVLSHWHNDHVGGLKDIFEHINPDSATIWKF 103
+ I +SH H DH+ GL + +
Sbjct: 58 DKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLT 90
>d1d5ta1 c.3.1.3 (A:-2-291,A:389-431) Guanine nucleotide
dissociation inhibitor, GDI {Cow (Bos taurus) [TaxId:
9913]}
Length = 336
Score = 25.6 bits (54), Expect = 5.9
Identities = 15/81 (18%), Positives = 33/81 (40%), Gaps = 8/81 (9%)
Query: 84 GGLKDIFEHINPDSATIWKFKGTEKDEAQATDFVPENKTVQ-TLTDGQLLKVEGATLRVI 142
GL ++ + + + GT D + EN V ++G++ + + ++I
Sbjct: 231 YGLGELPQGF---ARLSAIYGGTYMLNKPVDDIIMENGKVVGVKSEGEVARCK----QLI 283
Query: 143 HTPGHTTDHIVLKLEEENVVF 163
P + D + + E+ VF
Sbjct: 284 CDPSYVPDRVPIDDGSESQVF 304
>d1kifa1 c.4.1.2 (A:1-194,A:288-339) D-aminoacid oxidase, N-terminal
domain {Pig (Sus scrofa) [TaxId: 9823]}
Length = 246
Score = 25.2 bits (54), Expect = 6.2
Identities = 6/26 (23%), Positives = 11/26 (42%)
Query: 129 GQLLKVEGATLRVIHTPGHTTDHIVL 154
+ L+ + VIH GH + +
Sbjct: 200 REQLRFGSSNTEVIHNYGHGGYGLTI 225
>d1m1na_ c.92.2.3 (A:) Nitrogenase iron-molybdenum protein, alpha
chain {Azotobacter vinelandii [TaxId: 354]}
Length = 477
Score = 25.0 bits (54), Expect = 9.0
Identities = 9/30 (30%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
Query: 168 ILGEGTTVFSDLISYIESLRRIRSLKPDII 197
+G+ T ++ D+ Y E ++ +KPD+I
Sbjct: 390 EMGDSTLLYDDVTGY-EFEEFVKRIKPDLI 418
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.316 0.135 0.391
Gapped
Lambda K H
0.267 0.0458 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 804,618
Number of extensions: 36871
Number of successful extensions: 184
Number of sequences better than 10.0: 1
Number of HSP's gapped: 142
Number of HSP's successfully gapped: 42
Length of query: 216
Length of database: 2,407,596
Length adjustment: 82
Effective length of query: 134
Effective length of database: 1,281,736
Effective search space: 171752624
Effective search space used: 171752624
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (24.1 bits)