BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15471
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 77.8 bits (190), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 104/417 (24%), Positives = 171/417 (41%), Gaps = 55/417 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 105
Query: 54 VIMSYTLYYMFSSLQFDVPWSKCDPE-----WADMSTCYV---RGVNVSMSHVKSARVV- 104
I S+TL + L VP DP+ + + Y+ +G + A +V
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPTDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVF 165
Query: 105 -ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAAT 163
I + + + +S GIE + LAV ++ V L T
Sbjct: 166 LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT---------- 215
Query: 164 FPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIM 223
A G+ + TP +EKL D VW AA GQ+FF+LS+ G +I
Sbjct: 216 ------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIIT 257
Query: 224 YSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP-GLA 282
Y+SY ++ L + ++ ++ G + SI A+A + K G L
Sbjct: 258 YASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAFNLG 316
Query: 283 FVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCI 342
F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 317 FITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV--LW 374
Query: 343 CTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 375 TAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 427
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 76.6 bits (187), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 173/420 (41%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 48 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 106
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 107 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 166
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + CLAV ++ V L T
Sbjct: 167 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFCLAVFLVIRVFLLETPNGT------- 219
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 220 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 258
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 259 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 317
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 318 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 376
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 377 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 431
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 103/408 (25%), Positives = 171/408 (41%), Gaps = 34/408 (8%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 105
Query: 54 VIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATR 113
I S+TL + L VP + P D + + K V
Sbjct: 106 YIESWTLGFAIKFLVGLVP--EPPPNATDPDSI--------LRPFKEFLYSYIGVPKGDE 155
Query: 114 KVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVIXXXXX 173
+LK S + + +C+ VS +++ + KGI+ K+ V
Sbjct: 156 PILKPSL----FAYIVFLITMCINVS--ILIRGISKGIERFAKIAMPTLFILAVFLVIRV 209
Query: 174 XXXXXQDG-AISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSN 232
+G A G+ + TP +EKL D VW AA GQ+FF+LS+ G +I Y+SY
Sbjct: 210 FLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQ 269
Query: 233 NVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP-GLAFVAYPEALL 291
++ L + ++ ++ G + SI A+A + K G L F+ P
Sbjct: 270 DIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFS 328
Query: 292 RLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVI 351
+ L+F +LF GL S A+++ ++ + DE + R H + A+V +
Sbjct: 329 QTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV--LWTAAIVFFSA 386
Query: 352 GLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
L N L MD + G V+F + E + W++G + W+
Sbjct: 387 HLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 430
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 74.3 bits (181), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 105/420 (25%), Positives = 173/420 (41%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ S++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKASVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 73.2 bits (178), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 173/420 (41%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ +G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 105
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 165
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 166 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 218
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 219 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 257
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 258 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 316
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 317 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 375
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 376 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 430
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 104/418 (24%), Positives = 171/418 (40%), Gaps = 56/418 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 47 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 105
Query: 54 VIMSYTLYYMFSSLQFDVPWSK-CDPE-----WADMSTCYV---RGVNVSMSHVKSARVV 104
I S+TL + L VP DP+ + + Y+ +G + A +V
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPTDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAYIV 165
Query: 105 --ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAA 162
I + + + +S GIE + LAV ++ V L T
Sbjct: 166 FLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT--------- 216
Query: 163 TFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLI 222
A G+ + TP +EKL D VW AA GQ+FF+LS+ G +I
Sbjct: 217 -------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAII 257
Query: 223 MYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP-GL 281
Y+SY ++ L + ++ ++ G + SI A+A + K G L
Sbjct: 258 TYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAFNL 316
Query: 282 AFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFC 341
F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 317 GFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV--L 374
Query: 342 ICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 375 WTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 428
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 72.8 bits (177), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 72.0 bits (175), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IY+
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYFV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEAAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 71.6 bits (174), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ +G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGVGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A ++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAQMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 104/420 (24%), Positives = 171/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A ++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAQMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 71.6 bits (174), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 172/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEAAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL + A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLVASIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 103/420 (24%), Positives = 171/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+F +LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFATLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+SY ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASYVRKDQDIVLSGLTAATLNEKAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL S A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 68.2 bits (165), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 102/420 (24%), Positives = 171/420 (40%), Gaps = 58/420 (13%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLG--------LWNCCPIAKGVGVAMVTVSLIVCIYYN 53
+L G P+ ++E A+G++GG G LW AK +GV + + L+V IYY
Sbjct: 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNR-FAKILGVFGLWIPLVVAIYYV 109
Query: 54 VIMSYTLYYMFSSLQFDVPW---SKCDPE-----WADMSTCYV---RGVNVSMSHVKSAR 102
I S+TL + L VP + DP+ + + Y+ +G + A
Sbjct: 110 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 169
Query: 103 VV--ICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYF 160
+V I + + + +S GIE + LAV ++ V L T
Sbjct: 170 IVFLITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRVFLLETPNGT------- 222
Query: 161 AATFPYVIXXXXXXXXXXQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220
A G+ + TP +EKL D VW AA GQ+FF+LS+ G
Sbjct: 223 ---------------------AADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGA 261
Query: 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGP- 279
+I Y+S ++ L + ++ ++ G + SI A+A + K G
Sbjct: 262 IITYASAVRKDQDIVLSGLTAATLNEAAEVILG-GSISIPAAVAFFGVANAVAIAKAGAF 320
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
L F+ P + L+F +LF GL + A+++ ++ + DE + R H +
Sbjct: 321 NLGFITLPAIFSQTAGGTFLGFLWFFLLFFAGLVASIAIMQPMIAFLEDELKLSRKHAV- 379
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
A+V + L N L MD + G V+F + E + W++G + W+
Sbjct: 380 -LWTAAIVFFSAHLVMFL---NKSLDEMDFWAGTIGVVFFGLTELIIFFWIFG-ADKAWE 434
>pdb|3BO5|A Chain A, Crystal Structure Of Methyltransferase Domain Of Human
Histone-Lysine N-Methyltransferase Setmar
Length = 290
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 338 LPFCICTALVCYVIGLSCVTHGGNYVLT--LMDVYGGGTAVLFIAIFEC 384
P CIC C SC+ HG NY L D+ GG +FEC
Sbjct: 59 FPGCICVKTPCLPGTCSCLRHGENYDDNSCLRDIGSGGKYAE--PVFEC 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.141 0.456
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,435,520
Number of Sequences: 62578
Number of extensions: 659427
Number of successful extensions: 1407
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1331
Number of HSP's gapped (non-prelim): 32
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 54 (25.4 bits)