Query psy15471
Match_columns 550
No_of_seqs 246 out of 1729
Neff 7.4
Searched_HMMs 46136
Date Fri Aug 16 21:54:41 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15471.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15471hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3660|consensus 100.0 1E-120 3E-125 994.7 32.0 500 1-506 79-593 (629)
2 KOG3659|consensus 100.0 5E-116 1E-120 923.3 29.7 489 1-495 123-622 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 7E-104 1E-108 867.9 10.4 468 2-475 47-523 (523)
4 COG0733 Na+-dependent transpor 100.0 4.6E-68 9.9E-73 551.4 22.4 381 2-434 51-435 (439)
5 PF03845 Spore_permease: Spore 95.3 0.49 1.1E-05 49.0 15.3 95 141-243 122-216 (320)
6 TIGR00911 2A0308 L-type amino 95.1 1 2.2E-05 49.8 17.8 88 140-230 173-263 (501)
7 TIGR00912 2A0309 spore germina 94.7 0.21 4.6E-06 52.5 10.6 92 142-239 125-216 (359)
8 PRK11375 allantoin permease; P 94.0 3.7 8E-05 45.3 18.8 48 133-180 159-206 (484)
9 PRK15049 L-asparagine permease 91.9 17 0.00036 40.3 20.1 84 141-227 153-245 (499)
10 PRK11387 S-methylmethionine tr 91.4 23 0.00051 38.7 20.5 86 142-229 139-233 (471)
11 PRK10249 phenylalanine transpo 91.1 18 0.00039 39.4 19.2 88 139-228 142-235 (458)
12 TIGR00905 2A0302 transporter, 91.1 17 0.00038 39.7 19.2 91 142-237 139-234 (473)
13 PF02028 BCCT: BCCT family tra 91.1 0.57 1.2E-05 51.5 7.3 156 211-382 312-471 (485)
14 TIGR00910 2A0307_GadC glutamat 90.3 9.8 0.00021 42.2 16.4 29 132-161 124-152 (507)
15 PRK10655 potE putrescine trans 90.0 19 0.00041 38.8 18.1 90 142-237 133-225 (438)
16 PRK10836 lysine transporter; P 89.9 18 0.0004 39.7 18.1 23 203-226 207-229 (489)
17 TIGR00837 araaP aromatic amino 89.9 2.2 4.8E-05 45.1 10.5 87 136-229 119-205 (381)
18 TIGR00909 2A0306 amino acid tr 89.9 23 0.00051 37.9 18.6 83 141-231 142-224 (429)
19 TIGR00913 2A0310 amino acid pe 89.7 20 0.00042 39.3 18.1 85 141-226 127-221 (478)
20 PRK10435 cadB lysine/cadaverin 89.1 15 0.00032 39.8 16.3 100 133-239 123-225 (435)
21 PRK00701 manganese transport p 89.1 13 0.00029 40.4 15.8 35 295-330 304-338 (439)
22 PRK10644 arginine:agmatin anti 88.3 37 0.00081 36.7 18.8 96 135-238 129-228 (445)
23 COG1953 FUI1 Cytosine/uracil/t 88.2 14 0.00031 40.5 15.0 51 132-182 171-221 (497)
24 COG3949 Uncharacterized membra 88.2 14 0.00029 38.5 14.0 95 142-243 125-220 (349)
25 TIGR00842 bcct choline/carniti 88.1 1.6 3.5E-05 47.5 7.9 96 213-318 277-377 (453)
26 PF13520 AA_permease_2: Amino 87.7 7.5 0.00016 41.6 12.9 87 140-230 126-216 (426)
27 PF02133 Transp_cyt_pur: Perme 87.1 1.6 3.5E-05 47.2 7.3 52 130-181 135-186 (440)
28 PRK11049 D-alanine/D-serine/gl 87.1 40 0.00086 36.9 18.2 85 141-226 143-235 (469)
29 TIGR00814 stp serine transport 86.3 9.6 0.00021 40.9 12.6 116 144-265 134-254 (397)
30 PF03222 Trp_Tyr_perm: Tryptop 86.0 8.5 0.00018 41.3 11.9 178 141-332 129-307 (394)
31 PF00324 AA_permease: Amino ac 85.5 2 4.4E-05 47.0 7.1 90 139-229 124-227 (478)
32 PRK09928 choline transport pro 85.5 76 0.0016 36.5 20.3 78 157-239 96-180 (679)
33 TIGR00930 2a30 K-Cl cotranspor 85.5 89 0.0019 37.7 21.1 36 141-176 212-247 (953)
34 TIGR00796 livcs branched-chain 85.3 10 0.00022 40.4 12.0 86 132-223 111-200 (378)
35 TIGR03810 arg_ornith_anti argi 84.0 70 0.0015 34.9 19.3 101 131-236 123-229 (468)
36 PRK10746 putative transport pr 84.0 70 0.0015 34.9 19.9 85 141-227 133-225 (461)
37 PRK09950 putative transporter; 83.2 2.3 5E-05 47.0 6.2 96 213-318 323-423 (506)
38 COG1457 CodB Purine-cytosine p 81.8 20 0.00043 39.0 12.5 99 142-249 140-239 (442)
39 PF05525 Branch_AA_trans: Bran 81.5 9.3 0.0002 41.4 9.9 197 137-352 123-326 (427)
40 PRK09928 choline transport pro 81.1 1.2 2.5E-05 50.7 3.0 96 213-318 331-430 (679)
41 PRK10238 aromatic amino acid t 80.1 95 0.0021 33.8 19.1 88 140-229 134-227 (456)
42 PRK15433 branched-chain amino 79.8 16 0.00035 39.7 11.0 195 136-352 126-329 (439)
43 TIGR00907 2A0304 amino acid pe 75.0 66 0.0014 35.2 14.5 24 202-226 218-241 (482)
44 PRK03356 L-carnitine/gamma-but 74.2 9.1 0.0002 42.4 7.3 95 213-317 326-425 (504)
45 TIGR00906 2A0303 cationic amin 73.9 1.6E+02 0.0035 33.1 19.3 85 142-229 171-258 (557)
46 TIGR00800 ncs1 NCS1 nucleoside 73.3 1.4E+02 0.0031 32.3 17.4 38 134-172 141-179 (442)
47 COG1292 BetT Choline-glycine b 72.6 57 0.0012 36.2 12.8 160 213-388 326-490 (537)
48 PRK10580 proY putative proline 71.5 1.6E+02 0.0034 32.0 18.9 87 140-229 131-226 (457)
49 TIGR03428 ureacarb_perm permea 71.0 1.6E+02 0.0036 32.1 18.3 88 138-228 150-239 (475)
50 TIGR03813 put_Glu_GABA_T putat 69.5 1.8E+02 0.0038 31.8 16.9 38 134-172 126-167 (474)
51 KOG1287|consensus 66.4 1.8E+02 0.0039 32.1 15.0 77 145-224 148-226 (479)
52 PF01566 Nramp: Natural resist 65.2 1.4E+02 0.0031 31.2 14.0 38 295-332 249-287 (358)
53 PF05297 Herpes_LMP1: Herpesvi 64.3 2.2 4.8E-05 42.9 0.0 37 387-429 121-157 (381)
54 PRK11357 frlA putative fructos 60.8 2.4E+02 0.0052 30.3 17.8 84 143-229 138-222 (445)
55 PRK15419 proline:sodium sympor 59.7 2E+02 0.0044 31.8 14.4 46 285-331 313-359 (502)
56 COG0814 SdaC Amino acid permea 56.0 1.3E+02 0.0029 32.4 11.9 114 143-261 139-254 (415)
57 PF01235 Na_Ala_symp: Sodium:a 55.5 55 0.0012 35.5 8.7 170 141-326 148-334 (416)
58 PRK15035 cytochrome bd-II oxid 54.3 13 0.00028 41.0 3.8 113 290-402 7-127 (514)
59 COG0531 PotE Amino acid transp 51.9 2E+02 0.0043 30.8 12.6 83 141-226 143-225 (466)
60 TIGR02358 thia_cytX probable h 50.3 3.4E+02 0.0074 28.9 18.2 37 142-178 122-158 (386)
61 COG1114 BrnQ Branched-chain am 49.6 1.3E+02 0.0027 32.6 10.0 50 132-181 120-169 (431)
62 KOG1289|consensus 48.7 2.1E+02 0.0045 32.0 11.8 120 232-355 279-409 (550)
63 PRK15097 cytochrome d terminal 46.9 22 0.00049 39.3 4.1 111 291-402 8-127 (522)
64 PRK09664 tryptophan permease T 46.9 88 0.0019 33.9 8.6 98 141-243 135-234 (415)
65 TIGR02121 Na_Pro_sym sodium/pr 46.1 2.9E+02 0.0064 30.3 12.9 47 285-332 306-353 (487)
66 PRK11017 codB cytosine permeas 46.0 4E+02 0.0088 28.5 17.5 39 139-177 127-165 (404)
67 PRK03356 L-carnitine/gamma-but 45.4 1.6E+02 0.0034 32.8 10.4 108 157-269 89-210 (504)
68 PRK10483 tryptophan permease; 44.8 73 0.0016 34.5 7.6 182 139-332 134-315 (414)
69 PRK13629 threonine/serine tran 44.7 4.6E+02 0.0099 28.7 14.1 61 204-265 212-280 (443)
70 COG1271 CydA Cytochrome bd-typ 44.4 21 0.00045 39.0 3.3 111 290-401 7-126 (457)
71 PRK11021 putative transporter; 43.4 2.3E+02 0.005 30.1 11.3 90 141-238 124-214 (410)
72 TIGR01197 nramp NRAMP (natural 42.9 4.5E+02 0.0098 28.2 15.5 27 295-321 290-316 (390)
73 KOG1286|consensus 40.6 5.8E+02 0.013 28.8 17.0 76 149-226 178-256 (554)
74 COG1115 AlsT Na+/alanine sympo 38.6 56 0.0012 35.5 5.4 101 141-242 192-303 (452)
75 PRK15238 inner membrane transp 38.3 5.7E+02 0.012 28.0 19.5 36 201-237 211-247 (496)
76 TIGR00908 2A0305 ethanolamine 37.8 5.4E+02 0.012 27.6 18.1 93 140-237 129-227 (442)
77 PRK15132 tyrosine transporter 37.3 3.5E+02 0.0075 29.2 11.4 175 141-331 129-303 (403)
78 TIGR01773 GABAperm gamma-amino 35.9 5.8E+02 0.013 27.4 21.8 94 142-237 136-237 (452)
79 PRK10197 gamma-aminobutyrate t 30.6 7.1E+02 0.015 26.8 17.2 94 141-237 115-217 (446)
80 PRK09950 putative transporter; 28.9 4.4E+02 0.0095 29.4 10.6 70 157-231 87-165 (506)
81 PF11143 DUF2919: Protein of u 27.7 3.9E+02 0.0084 24.6 8.4 73 348-432 31-103 (149)
82 PHA03239 envelope glycoprotein 27.5 1.7E+02 0.0038 31.7 6.9 40 444-484 326-371 (429)
83 PTZ00206 amino acid transporte 27.1 8.5E+02 0.018 26.6 13.0 21 142-162 193-213 (467)
84 TIGR02119 panF sodium/pantothe 26.9 5.4E+02 0.012 28.0 11.1 46 285-331 306-352 (471)
85 PRK09442 panF sodium/panthothe 26.0 3.5E+02 0.0075 29.7 9.3 46 285-331 307-353 (483)
86 PF01528 Herpes_glycop: Herpes 23.6 3.4E+02 0.0074 29.0 8.2 46 425-475 282-327 (374)
87 TIGR00835 agcS amino acid carr 22.9 3.8E+02 0.0082 29.2 8.6 28 141-168 175-202 (425)
88 PF05545 FixQ: Cbb3-type cytoc 22.6 1.1E+02 0.0024 22.3 3.1 37 366-403 5-41 (49)
89 TIGR00842 bcct choline/carniti 22.0 9.7E+02 0.021 26.3 11.6 76 158-238 41-125 (453)
90 PF01352 KRAB: KRAB box; Inte 21.8 28 0.00061 24.7 -0.2 25 517-541 13-38 (41)
91 PRK10588 hypothetical protein; 21.2 1.9E+02 0.0041 24.7 4.6 40 381-434 54-94 (97)
92 PRK14221 camphor resistance pr 21.1 52 0.0011 29.3 1.3 52 210-262 69-121 (124)
93 PRK14230 camphor resistance pr 21.0 49 0.0011 29.3 1.2 52 209-262 60-112 (119)
94 PRK14225 camphor resistance pr 20.7 50 0.0011 30.0 1.2 53 209-263 77-130 (137)
95 PF02028 BCCT: BCCT family tra 20.1 1.2E+03 0.026 25.8 12.2 106 158-268 79-196 (485)
No 1
>KOG3660|consensus
Probab=100.00 E-value=1.4e-120 Score=994.70 Aligned_cols=500 Identities=46% Similarity=0.918 Sum_probs=476.4
Q ss_pred CEEEehhHHHHHHHHHHHhcCCCcccccc-ccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q psy15471 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPE 79 (550)
Q Consensus 1 ~l~~~GiPl~~lE~~lGQ~~~~g~i~~~~-~~P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~~C~~~ 79 (550)
+++++|+|+++||+++|||+++||+++|| ++|++||+|+++++++.++++||++++||+++|+++||++++||++|+|+
T Consensus 79 ~l~l~GlP~~~LE~slGQf~~~g~v~~wrri~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~ 158 (629)
T KOG3660|consen 79 VLFLFGLPLFFLEMSLGQFTSQGPVSVWRRICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNP 158 (629)
T ss_pred HHHHhcchHHHHHHHHhhhhcCChHHHHHHhChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCCh
Confidence 36789999999999999999999999997 99999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccc--ccc---cc----ccccCchhhhhhhhhhhhhcccccCC--CCCccchhHHHHHHHHHHHHHHHHHHh
Q psy15471 80 WADMSTCYVRG--VNV---SM----SHVKSARVVICQVESATRKVLKLSDG--IENLGPVKTDLAICLAVSWIVVVLCLM 148 (550)
Q Consensus 80 wnt~~~C~~~~--~n~---~~----~~~~s~~~~~~~~~ff~~~vL~~s~~--~~~~g~~~w~l~~~l~~~w~iv~~~~~ 148 (550)
||| ++|.+.+ .++ ++ .+..++ .++++.+.+++.+++ ++++|.++|++++|++++|+++++|++
T Consensus 159 wnt-~~c~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~ 232 (629)
T KOG3660|consen 159 WNT-EYCLDGTSKQNCANLTKLSNALNFNSP-----VAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIW 232 (629)
T ss_pred hcC-Cccccccccccccccccccchhhhccc-----hhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHh
Confidence 998 9998753 111 11 112244 789999998888774 889999999999999999999999999
Q ss_pred ccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhccccc
Q psy15471 149 KGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYN 228 (550)
Q Consensus 149 kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn 228 (550)
||+|++||++|+++++||+++++|++|++|||||.+|++||++|||+||.|+++|.||++|+|||+|+|+|++|++||||
T Consensus 233 KGvks~GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~~~~~kL~~~~vW~dA~~QiffSlsi~~G~li~laSyn 312 (629)
T KOG3660|consen 233 KGVKSSGKVVYFTATFPYVILIVLLIRGVTLPGAGDGINFYLTPDWTKLLDPQVWGDAATQIFFSLSIGFGGLIALASYN 312 (629)
T ss_pred hcccccCcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHHHHhhhhHhhcChhhHHHHHHhHHHhHHHHHhhhheeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCC-CccccccCCCceEeehhHHHHhcCCCchHHHHHHHHHH
Q psy15471 229 DFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNV-PINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLML 307 (550)
Q Consensus 229 ~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~-~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l 307 (550)
|++||++|||+++++.|+.+|+++|+++||++||+|++.|+ ++++++++|++|+|++||+++++||.+++|++|||+|+
T Consensus 313 k~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~LfF~ml 392 (629)
T KOG3660|consen 313 KFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSGLFFFML 392 (629)
T ss_pred ccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred HHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhh
Q psy15471 308 FVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSL 387 (550)
Q Consensus 308 ~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v 387 (550)
+++|++|+++.+|+++|++.|+||++|++|+.+++.+|+++|++|++++|++|+|+++++|+|++++.+++++++|++++
T Consensus 393 ~~LG~~s~~~~ve~i~t~i~D~Fp~~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a~~~~~~~~~~e~~~i 472 (629)
T KOG3660|consen 393 LLLGLDSQFAIVETIVTAIVDEFPRLRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAASWSLLFIAIFECFAI 472 (629)
T ss_pred HHHHhhhHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhchHHHHHHHHHHHHHH
Confidence 99999999999999999999999976778888999999999999999999999999999999999999999999999999
Q ss_pred hheeCccchhHHHHhhcC-CCCccccceeehhhhHHHHHHHHHHHHhhcccccCC-CccCchhhHhHhHHHHhhhhhHHH
Q psy15471 388 VWVYGLKNLCWDLKFMLK-FQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYE-NYDYPDWADGVGWCLACLSMCQIP 465 (550)
Q Consensus 388 ~wiYG~~rf~~di~~m~g-~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~-~~~yP~w~~~iGw~l~~~~ll~Ip 465 (550)
+|+||.+|+++||++|+| .+++.||++||+++||++++++++++.++|+|.+|+ .|+||.|++.+||+++++|+++||
T Consensus 473 ~wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~~~~i~v~s~~~~~p~~y~~~~~yP~w~~~~Gw~~a~~~~~~iP 552 (629)
T KOG3660|consen 473 AWVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPILLLGILVFSLVKYYPLKYNKVYVYPPWGDIVGWLVALSPLLVIP 552 (629)
T ss_pred hheecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHHHHHHHHHHHHhccCccCCcCCCCccHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 999999999999999999999999999999999999 899999999999999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHhhhccCCCCCCchhhccCChhh
Q psy15471 466 FWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGSSLK 506 (550)
Q Consensus 466 ~~ai~~~~~~~g~~~~~r~~~~~~p~~~w~p~~~~~~~~~~ 506 (550)
++|+++++|.++++++||++..++|+++|+|++++...+.+
T Consensus 553 ~~ai~~~~~~~~~~~~~R~~~~~~p~~~~~~~~~~~~~~~~ 593 (629)
T KOG3660|consen 553 LYAIIQILRAKGTKLKERIKFLLRPLSDWGPRDAEAPPEER 593 (629)
T ss_pred HHHHHHHHHccCCcHHHHHHHHhcCCcccCCccccccchhh
Confidence 99999999999987999999999999999999987654433
No 2
>KOG3659|consensus
Probab=100.00 E-value=4.5e-116 Score=923.30 Aligned_cols=489 Identities=42% Similarity=0.833 Sum_probs=467.8
Q ss_pred CEEEehhHHHHHHHHHHHhcCCCccccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCC
Q psy15471 1 MLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPE 79 (550)
Q Consensus 1 ~l~~~GiPl~~lE~~lGQ~~~~g~i~~~-~~~P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~~C~~~ 79 (550)
|+++.|+||+|||+++|||+|+|++++| |+||++|||||+++++++.+..|||++++|+++|++.||++++||++|+|+
T Consensus 123 mli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s 202 (629)
T KOG3659|consen 123 MLIVGGVPLFYMELALGQYHRQGCIGVWRRIAPALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNS 202 (629)
T ss_pred HHHHhccHHHHHHHHHHHHhcccchhHHHHhCHHhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCc
Confidence 5778999999999999999999999999 799999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccccc--ccccc-ccccCchhhhhhhhhhhhhcccccCC--CCCccchhHHHHHHHHHHHHHHHHHHhcccccc
Q psy15471 80 WADMSTCYVRG--VNVSM-SHVKSARVVICQVESATRKVLKLSDG--IENLGPVKTDLAICLAVSWIVVVLCLMKGIKTS 154 (550)
Q Consensus 80 wnt~~~C~~~~--~n~~~-~~~~s~~~~~~~~~ff~~~vL~~s~~--~~~~g~~~w~l~~~l~~~w~iv~~~~~kGvk~~ 154 (550)
||+ ++|.+.. .|.+. ..+.+| ++|||++.+|+.+++ ++|.|+++|++++|++++|++++++++||+|++
T Consensus 203 ~n~-~~C~~~~~s~~~~~~~ek~s~-----a~ef~~r~~l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kss 276 (629)
T KOG3659|consen 203 WNG-PNCFDPTWSKNCDEECEKTSP-----AQEFWYRKVLGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSS 276 (629)
T ss_pred ccC-CCccCccccccCchhhhccch-----hHHHHHhhcccccccccccccCCCchHHHHHHHHHHHHHHHHHhcccccc
Confidence 999 9999764 23222 345678 999999999999766 899999999999999999999999999999999
Q ss_pred ccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhccccccCCCcc
Q psy15471 155 GKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234 (550)
Q Consensus 155 GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn~~~~n~ 234 (550)
||++++++++||+++.++++|+++||||.+|+.||++||++|+.++.+|+||++|+|||||+|+|++++|||||||||||
T Consensus 277 GKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl~~~~vW~dAAtqiffslg~GfG~L~AfaSyn~F~NNc 356 (629)
T KOG3659|consen 277 GKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKLKEPSVWIDAATQIFFSLGPGFGVLIAFASYNKFHNNC 356 (629)
T ss_pred ceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHHhhHHHHHHHHHHHHhhcCccchhhhhhhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cCCCccc-cccCCCceEeehhHHHHhcCCCchHHHHHHHHHHHHH
Q psy15471 235 YRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LNVPINQ-VVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVL 310 (550)
Q Consensus 235 ~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~~~v~~-v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l~~~ 310 (550)
+|||++++.+|+++|+++|+++|+++|+||+. .+.+.++ +..+||||+|++||||+++||.+.+|+++||+||..+
T Consensus 357 ~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL~~l 436 (629)
T KOG3659|consen 357 YRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLMLLTL 436 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 6777776 5689999999999999999999999999999999999
Q ss_pred hhhcccccchhhHHHHHhhhcc-ccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhhhh
Q psy15471 311 GLDSEFALLENVLTSVSDEFLV-LRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVW 389 (550)
Q Consensus 311 gl~S~i~~~e~ivt~l~D~f~~-l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v~w 389 (550)
|++|+++.+|.++|.+.|++++ +||+|+.+++.+|+..+++|+++++.+|.|+++++|+|+.++.+++++++|+++|+|
T Consensus 437 gl~s~~g~~e~iit~l~d~~~~~l~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~~~vl~~Vlie~i~Vsw 516 (629)
T KOG3659|consen 437 GLDSMFGGIEAIITPLLDEFYLSLRKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAGLLVLFVVLIEAIAVSW 516 (629)
T ss_pred hhHhhhhhHHHHhccccchhhhHhhhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhhhHHHHHHHHHHHHHHh
Confidence 9999999999999999999976 888999999999999999999999999999999999999999999999999999999
Q ss_pred eeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhHHHHHHH
Q psy15471 390 VYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWAL 469 (550)
Q Consensus 390 iYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~Ip~~ai 469 (550)
+||.+||..|+++|+|++|+.||++||..++|++++++++..+.+++|.++.+|.||.|+.++||.+..+++++||++++
T Consensus 517 vYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~ll~if~~~~~~~~~~~~~~y~yp~Wa~~l~~~i~~ss~~~ip~~~~ 596 (629)
T KOG3659|consen 517 VYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVFLLFIFVFSLRNFSPIQVVIYAYPDWALVLGWAIRASSKICIPLYAI 596 (629)
T ss_pred hhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHHHHHHHHHHHhccccceEEeecCCchHHHHHHHHHhhHHHHHhHHhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhCCCcHHHHHhhhccCCCCCC
Q psy15471 470 VVVLRAKGSSLKQKFLNAISPTEDWG 495 (550)
Q Consensus 470 ~~~~~~~g~~~~~r~~~~~~p~~~w~ 495 (550)
|++++++|.+.+||.++...|.+++.
T Consensus 597 y~~~~~~~~~~~~~~~~~~~p~~~~~ 622 (629)
T KOG3659|consen 597 YKFVSRRGVSGKERLHRWITPEEGHA 622 (629)
T ss_pred heeeecCCCCchhhcccccCCCCCCc
Confidence 99998887449999999998876553
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=6.9e-104 Score=867.91 Aligned_cols=468 Identities=43% Similarity=0.893 Sum_probs=354.9
Q ss_pred EEEehhHHHHHHHHHHHhcCCCccccc-cccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCC
Q psy15471 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDPEW 80 (550)
Q Consensus 2 l~~~GiPl~~lE~~lGQ~~~~g~i~~~-~~~P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~~C~~~w 80 (550)
++++|+|++++|+++||++|+|++++| |++|++||+|++++++++++++||++++||+++|+++|+++++||++|+|+|
T Consensus 47 ~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~ 126 (523)
T PF00209_consen 47 LLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIFKGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSW 126 (523)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHHHTHHHH---HHHHHHHHHHHHHHHHHHHHHH---------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 467899999999999999999999999 8899999999999999999999999999999999999999999999999999
Q ss_pred CCcccccccccc--c------ccccccCchhhhhhhhhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHHhcccc
Q psy15471 81 ADMSTCYVRGVN--V------SMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIK 152 (550)
Q Consensus 81 nt~~~C~~~~~n--~------~~~~~~s~~~~~~~~~ff~~~vL~~s~~~~~~g~~~w~l~~~l~~~w~iv~~~~~kGvk 152 (550)
|+ ++|.+...+ . +....++| ++|||++++|+.++++++.|.++|+++++++++|+++++++.||+|
T Consensus 127 n~-~~c~~~~~~~~~~~~~~~~~~~~~~~-----~~~ff~~~vl~~s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~ 200 (523)
T PF00209_consen 127 NT-PNCYDIYSNCNCSNSSSYNFTQRISP-----AEEFFYREVLQISDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIE 200 (523)
T ss_dssp ------------------------------------------------------------HHHHHHHHHHHTTTTTTTHH
T ss_pred cc-cccccccccccccccccccccccccc-----ccccccccccccccccccccchhHHHHHHHHHHHHHHHHheEeccc
Confidence 99 999864311 1 00123456 8999999999999999999999999999999999999999999999
Q ss_pred ccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhccccccCCC
Q psy15471 153 TSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSN 232 (550)
Q Consensus 153 ~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn~~~~ 232 (550)
+.||++++++++|+++++++++|++||||+.+|++|+++|||+++.|+++|.+|++|+|||+|+|+|++++||||||+++
T Consensus 201 ~~~kv~~~~~~~p~v~l~il~ir~ltl~ga~~Gl~~~~~pd~~~l~~~~vW~~A~~Q~ffsl~ig~G~~it~~Sy~~~~~ 280 (523)
T PF00209_consen 201 SIGKVMYPTLLLPFVLLIILLIRSLTLPGASEGLKFLFTPDWSKLLDPKVWIAALGQVFFSLSIGFGIMITYGSYNKFKN 280 (523)
T ss_dssp HHHHHHHHHHH---HHHHHHHHHHHT-EEHHHHHHHHHSB-TTGTTSHHHHHHHHHHHHHHTTTTSSHHHHHHTTS-TTS
T ss_pred cccchhhhhhhhhhEEEEEEEEEEEcCCCCCCceEEEecCCcchhhHHHHHHHHHHHHhhccCCCcceEEEEcCcCCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchHHHHHHHHHHHHHhh
Q psy15471 233 NVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGL 312 (550)
Q Consensus 233 n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l~~~gl 312 (550)
|+.||++++++.|+++|+++|+++|+++||+|++.|.|++++.++|++|+|+++|+++++||.+++|+++||+|++++|+
T Consensus 281 n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~~agl 360 (523)
T PF00209_consen 281 NIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLFLAGL 360 (523)
T ss_dssp -SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHHHHHH
T ss_pred cccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhhhheeC
Q psy15471 313 DSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYG 392 (550)
Q Consensus 313 ~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v~wiYG 392 (550)
+|+++++|++++++.|+++..||+|+.++..+|++++++|++++|++|.|+++++|++.+++.+++++++|+++++|+||
T Consensus 361 ~S~i~~~E~iv~~l~d~~~~~~~~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG 440 (523)
T PF00209_consen 361 TSQISMLEVIVSALMDEFPISRKKRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYG 440 (523)
T ss_dssp HHHHHHHHHHHHHHHHTST----HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTST
T ss_pred hhcCCceeceeEeeeecCccchhhccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheecccc
Confidence 99999999999999999987666788888999999999999999999999999999999999999999999999999999
Q ss_pred ccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhHHHHHHHHHH
Q psy15471 393 LKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVV 472 (550)
Q Consensus 393 ~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~Ip~~ai~~~ 472 (550)
.||+.+|+++|.|++++.+|+++|||++|+++++++++++++++|.+|++|.||.|+.++||+++++++++||++++|++
T Consensus 441 ~~~~~~di~~~~g~~~~~~w~~~w~~v~Pi~ll~ili~~i~~~~~~~~~~~~yp~w~~~igw~i~~~~~l~Ip~~~i~~~ 520 (523)
T PF00209_consen 441 WDRFREDINEMLGFKPGKFWKFLWKYVTPIILLVILIWSIIDYKPLSYNSYIYPWWAIAIGWLIALSPLLPIPIYAIYKI 520 (523)
T ss_dssp HHHHHHHHHTT-SS---THHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSS-TTHHHHHHHH------------------
T ss_pred ceehhhhhcccccccHHHHHHhhEEEeecccccceeeeeEEecCCCCCcceEEhHheEEEEEEecccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHh
Q psy15471 473 LRA 475 (550)
Q Consensus 473 ~~~ 475 (550)
+|+
T Consensus 521 ~~~ 523 (523)
T PF00209_consen 521 CRT 523 (523)
T ss_dssp ---
T ss_pred cCC
Confidence 984
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=4.6e-68 Score=551.41 Aligned_cols=381 Identities=24% Similarity=0.449 Sum_probs=342.0
Q ss_pred EEEehhHHHHHHHHHHHhcCCCcccccc-cc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCC
Q psy15471 2 LVLAGKPMYFLELAVGQFGGVGPLGLWN-CC--PIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVPWSKCDP 78 (550)
Q Consensus 2 l~~~GiPl~~lE~~lGQ~~~~g~i~~~~-~~--P~~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lpW~~C~~ 78 (550)
++++|+|++++|+++||++|++|++++| .. +.++++||..++.++.+++||+++++|++.|++.|+++.+| . +
T Consensus 51 ~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~---~ 126 (439)
T COG0733 51 LLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-D---T 126 (439)
T ss_pred HHHHhHHHHHHHHHhhhhcCCChhHHHHHhccCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C---C
Confidence 4678999999999999999999999995 55 78999999999999999999999999999999999999876 1 1
Q ss_pred CCCCcccccccccccccccccCchhhhhhhhhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHHhccccc-cccc
Q psy15471 79 EWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKT-SGKV 157 (550)
Q Consensus 79 ~wnt~~~C~~~~~n~~~~~~~s~~~~~~~~~ff~~~vL~~s~~~~~~g~~~w~l~~~l~~~w~iv~~~~~kGvk~-~GKv 157 (550)
. +. ..++|.+. + ++ .+..+.+.+++|++.+.++.||+|. .+|.
T Consensus 127 -----~--------------~~------~~~~f~~~----~---~~----~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~ 170 (439)
T COG0733 127 -----G--------------EQ------FAQLFGQT----I---SN----PGLAVIFHLLFLVLTALIVSRGVKKGIEKA 170 (439)
T ss_pred -----h--------------hH------HHHHHHHH----h---cC----chHHHHHHHHHHHHHHHHHHHhHHhhHHHH
Confidence 0 00 34445433 1 11 3445566667777777777777774 4589
Q ss_pred hhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhccccccCCCccccc
Q psy15471 158 VYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237 (550)
Q Consensus 158 ~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSyn~~~~n~~rd 237 (550)
.++++|+.++++++|++|++|||||.+|++|+++|||+++.|+++|.+|.+|+|||||+|+|.|+|||||.++++|+.++
T Consensus 171 ~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~mitYsSYL~k~~~l~~s 250 (439)
T COG0733 171 NKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSDLVSS 250 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCcccchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchHHHHHHHHHHHHHhhhcccc
Q psy15471 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFA 317 (550)
Q Consensus 238 a~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~ 317 (550)
++.+++.|+..|++||++||+.++.++.+ ..+||||+|+++|++|++||.+++++++||+.+.++|++|.++
T Consensus 251 a~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--------~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 251 ALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876653 3489999999999999999999999999999999999999999
Q ss_pred cchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhhhheeCccchh
Q psy15471 318 LLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLC 397 (550)
Q Consensus 318 ~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v~wiYG~~rf~ 397 (550)
++|++++.++|+++. +|++++..++.+.+++|+|+.+..|.+++|.+|+.++++.+++.+++++++++|+++.|+.+
T Consensus 323 mlE~~va~l~~~~~~---~R~~a~~~~~~~~fl~gi~~~ls~g~~~fD~~D~~~s~~l~plgaL~~~i~~~w~~~~~~~~ 399 (439)
T COG0733 323 MLEVLVAALIDKFGI---SRKKATWLIGILIFLLGIPSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLKKELLR 399 (439)
T ss_pred HHHHHHHHHHHHhCc---chHHHHHHHHHHHHHHhHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 999999999999953 56678889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhh
Q psy15471 398 WDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIA 434 (550)
Q Consensus 398 ~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~ 434 (550)
++++.-.. +.+.+|+.+.||++|++++.+++..+..
T Consensus 400 ~~~~~~s~-~~~~~w~~~vr~i~Pi~i~~vl~~~~~~ 435 (439)
T COG0733 400 EELNAGSA-KLFKIWLYLVRYIAPIVILVVLILGFYE 435 (439)
T ss_pred HHHHhhhh-hhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997643 7788999999999999999999887743
No 5
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=95.34 E-value=0.49 Score=49.01 Aligned_cols=95 Identities=16% Similarity=0.155 Sum_probs=50.6
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
+++..+..||+|..+|+..+..++..+.+ +++-.+..+...- .++.|=++. +.+-...+.....+.. .|.-.
T Consensus 122 l~~~y~a~~G~e~i~R~~~~~~~~~~i~~--~~i~~~~~~~~~~---~~l~P~~~~--g~~~i~~~~~~~~~~~-~~~~~ 193 (320)
T PF03845_consen 122 LVAAYAARKGIEVIARVAEILFPIFLILL--LLILLLSIPNIDW---DNLLPVLES--GIKPILKGSLVISFPF-GGIEI 193 (320)
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHH--HHHHHHhcccCCH---HHeeCcccC--ChHHHHHHHHHHHHHH-HHHHH
Confidence 45667789999999997655544443333 3333333332111 234454432 2222233344444444 35555
Q ss_pred hhhccccccCCCccccceeehhH
Q psy15471 221 LIMYSSYNDFSNNVYRDALVVSV 243 (550)
Q Consensus 221 li~~aSyn~~~~n~~rda~~v~~ 243 (550)
+..+..|.|++++..|....-..
T Consensus 194 ~l~~~p~~~~~~~~~k~~~~~~~ 216 (320)
T PF03845_consen 194 LLFLFPFVKDKKKLKKSLLIAIL 216 (320)
T ss_pred HHHHHHHcCCchHHHHHHHHHHH
Confidence 66677788877777775544333
No 6
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=95.14 E-value=1 Score=49.80 Aligned_cols=88 Identities=11% Similarity=0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-cc-cccccceeeeecCcccc-cchHHHHHHHHHHHHHhhc
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QD-GAISGVLYFITPTWEKL-LDIQVWHAAAGQMFFSLSV 216 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~-ga~~Gl~~~~~pd~~~L-~~~~vW~~A~~Q~ffSl~i 216 (550)
.++......+|+|..+|+..+...+..+.++++.+-++. +. |...... ....++.. .+...|..|+..++|+. .
T Consensus 173 i~~~~~ln~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~--~~~~f~~~~~~~~~~~~a~~~~~~af-~ 249 (501)
T TIGR00911 173 VLLLTLVNCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLN--PKNAFEGTETSAGGIVLAFYSGIWAY-G 249 (501)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccC--cccccCCCCCcHHHHHHHHHHHHHHH-H
Confidence 345556677899999999887776665544444333322 11 1111110 00111111 13457888999999997 6
Q ss_pred ccchhhhccccccC
Q psy15471 217 SMGGLIMYSSYNDF 230 (550)
Q Consensus 217 g~G~li~~aSyn~~ 230 (550)
|+-....++.-.|.
T Consensus 250 G~e~~~~~a~E~kn 263 (501)
T TIGR00911 250 GWNYLNFVTEEVKN 263 (501)
T ss_pred hHHHHhhhHHHhcC
Confidence 88777777765544
No 7
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=94.72 E-value=0.21 Score=52.46 Aligned_cols=92 Identities=11% Similarity=0.100 Sum_probs=52.7
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchh
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGL 221 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~l 221 (550)
++.....+|+|..+|+..+..++-.+.. ++++-.+..+. .+ .+ .+.|-+++ .-.+++..+...++++.+ |+..+
T Consensus 125 ~~~~~~~~Gi~~i~r~~~i~~~~~i~~~-~~il~~~~~~~-~~-~~-~l~P~~~~-g~~~~~~~~~~~~~~~f~-g~~i~ 198 (359)
T TIGR00912 125 VSIYIVRKGIEVLLRTAEILLIIFLILF-ILVLILLAPKL-GN-IK-NLLPVLEN-GLSPILKGAYPVVTFAFG-EIEIF 198 (359)
T ss_pred HHHHHHHccHHHHHHHHHHHHHHHHHHH-HHHHHHHhccc-cc-HH-HccCcccc-CcHHHHhhhhHHhhhhhH-HHHHH
Confidence 4455678999999998876654433221 12222222221 11 12 23455543 123566666657788875 88888
Q ss_pred hhccccccCCCcccccee
Q psy15471 222 IMYSSYNDFSNNVYRDAL 239 (550)
Q Consensus 222 i~~aSyn~~~~n~~rda~ 239 (550)
..++.+.|.++|..|...
T Consensus 199 ~~~~~~~~~~~~~~k~~~ 216 (359)
T TIGR00912 199 FLLFPLLSKKKKIKKSII 216 (359)
T ss_pred HHHHHHhCChhhhHHHHH
Confidence 888888777777665444
No 8
>PRK11375 allantoin permease; Provisional
Probab=94.03 E-value=3.7 Score=45.30 Aligned_cols=48 Identities=17% Similarity=0.182 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccc
Q psy15471 133 AICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQD 180 (550)
Q Consensus 133 ~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ 180 (550)
..+.++.|++.......|.|...|..++..++-+++++.+.+..++.-
T Consensus 159 ~i~~~i~~~l~~~~~~~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~ 206 (484)
T PRK11375 159 LITFLIFWLVNVGIGFGGGKVLNKFTAILNPCIYIVFGGMAIWAISLV 206 (484)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 466777888888888899999889888888888777777777776654
No 9
>PRK15049 L-asparagine permease; Provisional
Probab=91.90 E-value=17 Score=40.27 Aligned_cols=84 Identities=17% Similarity=0.182 Sum_probs=43.0
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccc--cc-----ccccceeeeecCccccc-c-hHHHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ--DG-----AISGVLYFITPTWEKLL-D-IQVWHAAAGQMF 211 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL--~g-----a~~Gl~~~~~pd~~~L~-~-~~vW~~A~~Q~f 211 (550)
+++.....+|+|..+|+..+...+-.+.++++.+-++.+ .+ ...+..+.. +-+... + ...+..++.+++
T Consensus 153 ~l~~~iN~~gvk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~--~~~~~~p~g~~~~~~~~~~~~ 230 (499)
T PRK15049 153 TIVGTMNMIGVKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLIT--DNGGFFPHGLLPALVLIQGVV 230 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccc--CCCCcccccHHHHHHHHHHHH
Confidence 455667788999999988776654443333333332211 11 111121111 111111 1 123345667888
Q ss_pred HHhhcccchhhhcccc
Q psy15471 212 FSLSVSMGGLIMYSSY 227 (550)
Q Consensus 212 fSl~ig~G~li~~aSy 227 (550)
|++ .|+......+.=
T Consensus 231 faf-~G~e~i~~~aeE 245 (499)
T PRK15049 231 FAF-ASIEMVGTAAGE 245 (499)
T ss_pred HHH-hhHHHHHHHHHH
Confidence 988 677777766653
No 10
>PRK11387 S-methylmethionine transporter; Provisional
Probab=91.44 E-value=23 Score=38.68 Aligned_cols=86 Identities=8% Similarity=0.065 Sum_probs=44.6
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-----cc---cc-cccceeeeecCcccccchHHHHHHHHHHHH
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-----QD---GA-ISGVLYFITPTWEKLLDIQVWHAAAGQMFF 212 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-----L~---ga-~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ff 212 (550)
+..+...+|+|..+|+.........+.++++.+-++. .+ +. .....++-.++|.. .....+..++..++|
T Consensus 139 ~~~~in~~gvk~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~f 217 (471)
T PRK11387 139 LIFGLNVVSTRFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTAEGWFP-HGGLPILMTMVAVNF 217 (471)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCCCCCCc-ccHHHHHHHHHHHHH
Confidence 4556777899988887655544444433332222211 11 10 01111211223311 012346677778888
Q ss_pred Hhhcccchhhhcccccc
Q psy15471 213 SLSVSMGGLIMYSSYND 229 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~ 229 (550)
+. .|+.....++.=.|
T Consensus 218 af-~G~e~~~~~a~E~k 233 (471)
T PRK11387 218 AF-SGTELIGIAAGETE 233 (471)
T ss_pred HH-cCHHHHHHHHHHhc
Confidence 88 58888888776443
No 11
>PRK10249 phenylalanine transporter; Provisional
Probab=91.14 E-value=18 Score=39.44 Aligned_cols=88 Identities=9% Similarity=0.128 Sum_probs=46.8
Q ss_pred HHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccc-----ccccccceeeee-cCcccccchHHHHHHHHHHHH
Q psy15471 139 SWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ-----DGAISGVLYFIT-PTWEKLLDIQVWHAAAGQMFF 212 (550)
Q Consensus 139 ~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL-----~ga~~Gl~~~~~-pd~~~L~~~~vW~~A~~Q~ff 212 (550)
.+++..+...+|+|..||+..+......+.++++.+-++.+ ++...+.+..+. +++.. ...+.+..++.+++|
T Consensus 142 ~~~l~~~lN~~gv~~~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~ 220 (458)
T PRK10249 142 FFIIINAVNLVNVRLYGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNLWRYGGFFA-TGWNGLILSLAVIMF 220 (458)
T ss_pred HHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhccCCCCCCC-CcHHHHHHHHHHHHH
Confidence 34456667789999999986665544433333322222211 111122222221 11100 123456788899999
Q ss_pred Hhhcccchhhhccccc
Q psy15471 213 SLSVSMGGLIMYSSYN 228 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn 228 (550)
++ .|+......+.=.
T Consensus 221 af-~G~e~~~~~a~E~ 235 (458)
T PRK10249 221 SF-GGLELIGITAAEA 235 (458)
T ss_pred HH-cCHHHHHHHHHHh
Confidence 98 7777776666543
No 12
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=91.13 E-value=17 Score=39.69 Aligned_cols=91 Identities=9% Similarity=0.131 Sum_probs=48.9
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-cccccccceeeee----cCcccccchHHHHHHHHHHHHHhhc
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QDGAISGVLYFIT----PTWEKLLDIQVWHAAAGQMFFSLSV 216 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~ga~~Gl~~~~~----pd~~~L~~~~vW~~A~~Q~ffSl~i 216 (550)
+......+|+|..+|+..+...+-.+.++++.+-++. ..+. .....+. |++.. ....+..++..++|+. .
T Consensus 139 ~~~~ln~~Gi~~~~~i~~~~~~~~l~~l~~~ii~~~~~~~~~--~~~~~~~~~~~p~~~~--~~~~~~~~~~~~~~af-~ 213 (473)
T TIGR00905 139 VFTFLVLRGVRQAAFINTITTIAKLIPLFLFIIIGWFWFKLD--LFTADFWGHDVPSLGS--VFSQVKNTMLVTLWVF-I 213 (473)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch--hcccccCccCCCcccc--hHHHHHHHHHHHHHHH-H
Confidence 3556677899999998776654433222222222211 1111 1111111 22211 2346778888899998 4
Q ss_pred ccchhhhccccccCCCccccc
Q psy15471 217 SMGGLIMYSSYNDFSNNVYRD 237 (550)
Q Consensus 217 g~G~li~~aSyn~~~~n~~rd 237 (550)
|+=....++.-.|.+.|+.|-
T Consensus 214 G~e~~~~~a~E~k~~r~iPra 234 (473)
T TIGR00905 214 GIEGAVVSSGRAKNKSDVGKA 234 (473)
T ss_pred hHHHHHHHHHHHhccccchHH
Confidence 887777777665554455443
No 13
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=91.06 E-value=0.57 Score=51.53 Aligned_cols=156 Identities=18% Similarity=0.180 Sum_probs=83.6
Q ss_pred HHHhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cC-CCccccccCCCceEeehh
Q psy15471 211 FFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LN-VPINQVVKEGPGLAFVAY 286 (550)
Q Consensus 211 ffSl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~-~~v~~v~~~G~~L~Fi~~ 286 (550)
..+.+.-.|..++==|+ -+-.|+-++ .+.+.--+.+++-|++.|--|-. .| .++.+..++|+.- +.
T Consensus 312 WiawaPfvG~FiArISk----GRTIRE~il---~~~~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~g~~~---a~ 381 (485)
T PF02028_consen 312 WIAWAPFVGLFIARISK----GRTIREFIL---GVLLVPSLFCFLWFSIFGGYALYLQLSGAGDLAAANEQGPEA---AL 381 (485)
T ss_dssp HHHTHHHHHHHHHHCTT----TSBHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHCTSS-HHHHHHH-HHH---HH
T ss_pred HHHHHHHHHHHHhhhcC----CcCHHHHHH---HHHHhhHHHHHHHHHHHCchHHhhHhhhhhhHHHHhhcchhh---HH
Confidence 34556666777764452 334565443 34455555666677777765532 22 2333333455542 44
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehh
Q psy15471 287 PEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTL 366 (550)
Q Consensus 287 P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l 366 (550)
-+.++++|.+++..+++.+++++.=.+|.=+..-++-+.-.++-+ .+++.....-|++.-.+++.+...+| ++.
T Consensus 382 ~~~l~~lP~~~i~~~~~lil~~~f~vTs~DS~~~~la~~s~~~~~---ep~~~~ri~W~~~~~~~a~~ll~~gg---l~~ 455 (485)
T PF02028_consen 382 FAFLEQLPLSKILSILFLILIFIFFVTSADSATYVLAMLSSKGDE---EPPRWLRIFWGLIIGALAIVLLLIGG---LDA 455 (485)
T ss_dssp HHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTS---SS-HHHHHHHHHHHHHHHHHHHHHHS---SHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHcCCCC---CCchHHHHHHHHHHHHHHHHHHHhCC---HHH
Confidence 577899999999999888887776555555544444333333211 12233334444445455555555577 566
Q ss_pred hhhhhhhHHHHHHHHH
Q psy15471 367 MDVYGGGTAVLFIAIF 382 (550)
Q Consensus 367 ~D~~~~~~~l~~~~~~ 382 (550)
+.....-..+++..+.
T Consensus 456 lq~~~ii~~lP~~~v~ 471 (485)
T PF02028_consen 456 LQSASIIGGLPFSFVM 471 (485)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 6665543344443333
No 14
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=90.28 E-value=9.8 Score=42.19 Aligned_cols=29 Identities=17% Similarity=0.394 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhhh
Q psy15471 132 LAICLAVSWIVVVLCLMKGIKTSGKVVYFA 161 (550)
Q Consensus 132 l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~ 161 (550)
..+.+++.|+++ +...+|+|..+|+..+.
T Consensus 124 ~i~~l~i~~~~t-~~n~~G~k~~~~i~~i~ 152 (507)
T TIGR00910 124 FIAALIIFWALA-FSQFGGTKRTAKIAKAG 152 (507)
T ss_pred HHHHHHHHHHHH-HHHHhhhHHHHHHHHHH
Confidence 334455566544 45678999988876543
No 15
>PRK10655 potE putrescine transporter; Provisional
Probab=90.03 E-value=19 Score=38.85 Aligned_cols=90 Identities=12% Similarity=0.146 Sum_probs=47.4
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCccc--ccchHHHHHHHHHHHHHhhcccc
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEK--LLDIQVWHAAAGQMFFSLSVSMG 219 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~--L~~~~vW~~A~~Q~ffSl~ig~G 219 (550)
+......+|+|..+|+..++...-.+.++++.+-++...+ .+ .+.++|+. ......+..++..++|+. .|+.
T Consensus 133 ~~~~ln~~g~~~~~~i~~i~~~~~l~~l~~~~i~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~~af-~G~e 206 (438)
T PRK10655 133 LCTVANFGGARITGQISSVTVWGVIIPVVGLSIIGWFWFS-PS----LYVAAWNPHHLPFFSAVGSSIAMTLWAF-LGLE 206 (438)
T ss_pred HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-cc----cccCCcCccCCchHHHHHHHHHHHHHHH-hhhh
Confidence 3445667899999998665543332222222222211111 11 12333321 111245667777888988 7888
Q ss_pred hhhhccccccC-CCccccc
Q psy15471 220 GLIMYSSYNDF-SNNVYRD 237 (550)
Q Consensus 220 ~li~~aSyn~~-~~n~~rd 237 (550)
....++.-.|. +.|+.|-
T Consensus 207 ~~~~~a~E~k~P~r~iPrA 225 (438)
T PRK10655 207 SACANSDAVENPERNVPIA 225 (438)
T ss_pred hhhhhHHHhhCccccccHH
Confidence 88888775554 3355554
No 16
>PRK10836 lysine transporter; Provisional
Probab=89.94 E-value=18 Score=39.72 Aligned_cols=23 Identities=13% Similarity=-0.067 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHhhcccchhhhccc
Q psy15471 203 WHAAAGQMFFSLSVSMGGLIMYSS 226 (550)
Q Consensus 203 W~~A~~Q~ffSl~ig~G~li~~aS 226 (550)
...++..++|+. .|+-.....+.
T Consensus 207 ~~~~~~~~~faf-~G~e~~~~~a~ 229 (489)
T PRK10836 207 MIGVAMIVGFSF-QGTELIGIAAG 229 (489)
T ss_pred HHHHHHHHHHHH-ccHHHHHHHHH
Confidence 345556677877 57777766665
No 17
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=89.90 E-value=2.2 Score=45.14 Aligned_cols=87 Identities=9% Similarity=-0.031 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhh
Q psy15471 136 LAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLS 215 (550)
Q Consensus 136 l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ 215 (550)
++.+++ +.....+|+|..+|+..+....-.+.++.+.+.++.- . +. .. +.|.............|..-.+++.|
T Consensus 119 ~~~~~v-~~~l~~~G~~~~~~v~~i~~~~~l~~l~~~ii~~~~~--~-~~-~~-~~~~~~~~~~~~~~~~a~~~~~~~fg 192 (381)
T TIGR00837 119 LIFTVL-FGSFVWLSTSAVDRITRVLIFGKIIAFALVFSGLLPH--V-KG-DL-LLDVALDTSYWPYILSALPVCLTSFG 192 (381)
T ss_pred HHHHHH-HHHHHHhchhHHHHHHHHHHHHHHHHHHHHHHHHHhh--c-cH-HH-HhcCccccccHHHHHHHHHHHHHHHH
Confidence 333433 3456788999999988776555444444443333321 1 10 01 22221111123344577777777774
Q ss_pred cccchhhhcccccc
Q psy15471 216 VSMGGLIMYSSYND 229 (550)
Q Consensus 216 ig~G~li~~aSyn~ 229 (550)
..+.+..+..+.+
T Consensus 193 -~~~~i~~~~~~~~ 205 (381)
T TIGR00837 193 -FHGNVPSLYKYYD 205 (381)
T ss_pred -cccccHHHHHHhc
Confidence 2355666666554
No 18
>TIGR00909 2A0306 amino acid transporter.
Probab=89.89 E-value=23 Score=37.92 Aligned_cols=83 Identities=18% Similarity=0.199 Sum_probs=50.0
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
++......+|+|..+|+..+...+..+.++++.+-++.-... + .+.|.+. .....+..|...++|++. |+-.
T Consensus 142 ~~~~~l~~~g~~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-~----~~~~~~~--~~~~~~~~~~~~~~~af~-G~e~ 213 (429)
T TIGR00909 142 LFLTYILYLGAKESGKVNDILVVLKVAALLLFAALGAIHFAS-N----NYTPFMP--MGFGGVGAATALVFFAFI-GFEA 213 (429)
T ss_pred HHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-H----hcCCCCC--CcHHHHHHHHHHHHHHHh-hHHH
Confidence 345556778999999998887766655554433333211111 1 1122111 123467888999999984 8888
Q ss_pred hhhccccccCC
Q psy15471 221 LIMYSSYNDFS 231 (550)
Q Consensus 221 li~~aSyn~~~ 231 (550)
...++.-.|..
T Consensus 214 ~~~~~~E~~~p 224 (429)
T TIGR00909 214 ISTAAEEVKNP 224 (429)
T ss_pred HHhhHHhccCc
Confidence 88777665543
No 19
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=89.73 E-value=20 Score=39.25 Aligned_cols=85 Identities=9% Similarity=0.181 Sum_probs=40.6
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccc-----ccc-cccceeeee-cCcccc---cchHHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ-----DGA-ISGVLYFIT-PTWEKL---LDIQVWHAAAGQM 210 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL-----~ga-~~Gl~~~~~-pd~~~L---~~~~vW~~A~~Q~ 210 (550)
+++.+...+|+|..+|+......+-.+.++.+.+-++.+ +.. ..+..+... ++|..- .....+..++..+
T Consensus 127 ~~~~~in~~gv~~~~~~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (478)
T TIGR00913 127 VFIVIINLFGVKGYGEAEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTA 206 (478)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHH
Confidence 455566789999999887655422222222111111111 110 011111111 122211 0134567788888
Q ss_pred HHHhhcccchhhhccc
Q psy15471 211 FFSLSVSMGGLIMYSS 226 (550)
Q Consensus 211 ffSl~ig~G~li~~aS 226 (550)
+|++ .|+-....++.
T Consensus 207 ~~af-~G~e~~~~~a~ 221 (478)
T TIGR00913 207 AFSF-GGTELVALTAG 221 (478)
T ss_pred Hhhh-ccHHHHHHHHH
Confidence 8887 66666666654
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=89.11 E-value=15 Score=39.79 Aligned_cols=100 Identities=12% Similarity=0.175 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccc--cchHHHHHHHHHH
Q psy15471 133 AICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKL--LDIQVWHAAAGQM 210 (550)
Q Consensus 133 ~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L--~~~~vW~~A~~Q~ 210 (550)
+.++.+.| ++.+...+|+|..+|+..+...+-.+.++.+.+.+..-.. .+. +.++|+.. .+...+..|+..+
T Consensus 123 ~~~~~i~~-~~~~ln~~gvk~~~~i~~i~~~~~li~~~~~~i~g~~~~~-~~~----~~~~~~~~~~~~~~~~~~a~~~~ 196 (435)
T PRK10435 123 IACIAIVW-VFTFVNMLGGTWVSRLTTIGLVLVLIPVVGTAIVGWHWFD-AAT----YAANWNTSDTTDGHAIIKSILLC 196 (435)
T ss_pred HHHHHHHH-HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-HHh----hcccccCCCCchHHHHHHHHHHH
Confidence 34556666 4455678899998888655443322222222222211000 011 12344321 2346788999999
Q ss_pred HHHhhcccchhhhccccccC-CCcccccee
Q psy15471 211 FFSLSVSMGGLIMYSSYNDF-SNNVYRDAL 239 (550)
Q Consensus 211 ffSl~ig~G~li~~aSyn~~-~~n~~rda~ 239 (550)
+|+. .|+.....++.-.|. +.|+.|-..
T Consensus 197 ~faf-~G~E~~~~~a~E~knP~r~iPrAi~ 225 (435)
T PRK10435 197 LWAF-VGVESAAVSTGMVKNPKRTVPLATM 225 (435)
T ss_pred HHHH-hhHHHHHHHHHHhhCccccccHHHH
Confidence 9999 888888888876554 345555443
No 21
>PRK00701 manganese transport protein MntH; Reviewed
Probab=89.06 E-value=13 Score=40.44 Aligned_cols=35 Identities=23% Similarity=0.175 Sum_probs=23.0
Q ss_pred CchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhh
Q psy15471 295 FPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF 330 (550)
Q Consensus 295 ~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f 330 (550)
.++.-..+|-+-++.+|++|.+.....- ..+.|.+
T Consensus 304 ~G~~a~~lFaiGL~aag~sS~i~~~~a~-~~v~~~~ 338 (439)
T PRK00701 304 LGAAAATLFGIALLASGLSSTVVGTLAG-QIVMEGF 338 (439)
T ss_pred HhHHHHHHHHHHHHHhHhHHHhHHHHHH-HHHHHHH
Confidence 4566677888888889999887633222 2345554
No 22
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=88.29 E-value=37 Score=36.72 Aligned_cols=96 Identities=20% Similarity=0.303 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-cccccccceeeeecCcc--cccchHHHHHHHHHHH
Q psy15471 135 CLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QDGAISGVLYFITPTWE--KLLDIQVWHAAAGQMF 211 (550)
Q Consensus 135 ~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~ga~~Gl~~~~~pd~~--~L~~~~vW~~A~~Q~f 211 (550)
+..+.|+ ......+|+|..+|+..+...+-.+.++++.+.++. .++. .+.++|+ .......+..|+..++
T Consensus 129 ~~~~~~~-~~~ln~~gvk~~~~i~~i~~~~~~i~l~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (445)
T PRK10644 129 CVVVLWI-FVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRGE------TYMAAWNVSGLGTFGAIQSTLNVTL 201 (445)
T ss_pred HHHHHHH-HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCch------hccCCccccccchHHHHHHHHHHHH
Confidence 3444443 445567899999998776665544444433333322 1110 1223332 1112345667888899
Q ss_pred HHhhcccchhhhccccccCC-Cccccce
Q psy15471 212 FSLSVSMGGLIMYSSYNDFS-NNVYRDA 238 (550)
Q Consensus 212 fSl~ig~G~li~~aSyn~~~-~n~~rda 238 (550)
|+. .|+.....++.-.|.- .|+.|-.
T Consensus 202 ~af-~G~e~~~~~aeE~k~P~r~iPrai 228 (445)
T PRK10644 202 WSF-IGVESASVAAGVVKNPKRNVPIAT 228 (445)
T ss_pred HHH-HhHHHHHHHHHHhhCcccchhHHH
Confidence 988 7888888887755432 3444443
No 23
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=88.22 E-value=14 Score=40.51 Aligned_cols=51 Identities=25% Similarity=0.586 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccc
Q psy15471 132 LAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGA 182 (550)
Q Consensus 132 l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga 182 (550)
-.+|.++.|++...++++|.+...|.-....+.-++.++.+++..+..-|.
T Consensus 171 ~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g 221 (497)
T COG1953 171 ELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGG 221 (497)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCC
Confidence 458999999999999999999999999999999999999999988765443
No 24
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=88.18 E-value=14 Score=38.54 Aligned_cols=95 Identities=16% Similarity=0.055 Sum_probs=51.5
Q ss_pred HHHHHHhcc-ccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 142 VVVLCLMKG-IKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 142 iv~~~~~kG-vk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
++..++..| +|..-++.-+..|+.+++ ..++... -..+...+-.++|+.+- +.=|.+|.+-.-+.+.++.+.
T Consensus 125 ~v~i~lfl~~vegi~tvn~iI~P~LIi~--l~~v~~~---~~f~~~~~~a~~~~~~~--~~W~~~~~~Y~alNi~~~~av 197 (349)
T COG3949 125 LVLILLFLGRVEGIITVNGIITPFLIII--LVLVTLS---FQFTNLGNAAQIVLTKQ--GNWKASAVGYGALNILVAVAV 197 (349)
T ss_pred HHHHHHHHhcccceeeeheeHHHHHHHH--HHHHHHH---HHHhhccchhhhcCCcC--CChHHHHHhhhhHHHHhHhHh
Confidence 344444444 776556654444443333 2222211 11223334456777763 333456666777777889999
Q ss_pred hhhccccccCCCccccceeehhH
Q psy15471 221 LIMYSSYNDFSNNVYRDALVVSV 243 (550)
Q Consensus 221 li~~aSyn~~~~n~~rda~~v~~ 243 (550)
+.+.|+-.+.+.+..+-++.=++
T Consensus 198 Lv~lg~~~~~~~~~~~g~l~ggl 220 (349)
T COG3949 198 LVPLGGRMESRKVSGIGGLIGGL 220 (349)
T ss_pred hhhhcccccccchhhhhhhhhhH
Confidence 99999766666555554444333
No 25
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=88.14 E-value=1.6 Score=47.52 Aligned_cols=96 Identities=20% Similarity=0.116 Sum_probs=52.8
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cCC-Ccc-ccccCCCceEeehhH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LNV-PIN-QVVKEGPGLAFVAYP 287 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~~-~v~-~v~~~G~~L~Fi~~P 287 (550)
+.+.-.|..++==| |....|+-+...+ +.--+.+++-|++.|-.|-+ .|. +.. ++.+++. -.+.-
T Consensus 277 awaPfvG~FiARIS----rGRTIRe~ilg~~---~~psl~~~~wf~ifGg~ai~~~~~g~~~~~~~~~~~~~---~~a~~ 346 (453)
T TIGR00842 277 SWSPFVGMFIARIS----RGRTIREFIFGVL---LGPTAFTYLWFSVFGNSALYLQQNGGFINAPFVVETNG---ARALF 346 (453)
T ss_pred HHHHHHHhheeeec----CCcCHHHHHHHHH---HHHHHHHHHHHHHHhHHHHHHHHhcchhhhHHHhcccc---hhHHH
Confidence 45555666665444 3344666543332 33333345556666655432 221 111 1222222 24566
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhhhccccc
Q psy15471 288 EALLRLPFPQLWSILFFLMLFVLGLDSEFAL 318 (550)
Q Consensus 288 ~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~ 318 (550)
+.+.++|.+++.+.++.+.+++.=.+|.=+.
T Consensus 347 ~~l~~lP~~~i~~~l~~il~~if~vTs~DS~ 377 (453)
T TIGR00842 347 GLLQALPLGTITSALALIVIIIFFITSADSG 377 (453)
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHHHhcchHH
Confidence 8899999999999888887776655554444
No 26
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=87.67 E-value=7.5 Score=41.58 Aligned_cols=87 Identities=18% Similarity=0.262 Sum_probs=43.4
Q ss_pred HHHHHHHHhccccccccchhhhhhhHH-HHHHHHHhhhcccccccccce---eeeecCcccccchHHHHHHHHHHHHHhh
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATFPY-VILVTLLVTGLLQDGAISGVL---YFITPTWEKLLDIQVWHAAAGQMFFSLS 215 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~p~-v~l~il~ir~ltL~ga~~Gl~---~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ 215 (550)
-++......+|+|..+|+......+-. ..++++.+-++-.... ++.. ....+.+.... +.. ..++.-++|++
T Consensus 126 ~~~~~~l~~~g~~~~~~~~~~~~~~~i~~~l~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~- 201 (426)
T PF13520_consen 126 ILLFTLLNLLGIKLSGKIQNILTVIKIVIPLLVLIILGIVSFSF-SGFNSLSFSLSTFFPSGW-PGF-LAGFSVAFFAF- 201 (426)
T ss_dssp HHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTC-CHHH----SHSCSSCSSS-SHH-HHHHHHHGGGG-
T ss_pred cccceEeeechhhhhhhhhhhhhhhhhhhhhhhheeEEEeeecc-cccccccccccccCCccc-cch-hhHHHHHHhhc-
Confidence 345667778999999998777665554 2333332233222111 1111 11111111111 223 35556666666
Q ss_pred cccchhhhccccccC
Q psy15471 216 VSMGGLIMYSSYNDF 230 (550)
Q Consensus 216 ig~G~li~~aSyn~~ 230 (550)
.|+.....++.=+|+
T Consensus 202 ~G~e~~~~~~~E~k~ 216 (426)
T PF13520_consen 202 SGFEAIASLAEENKN 216 (426)
T ss_dssp TTTTHHHHGGGGSSS
T ss_pred ccccccccccccccc
Confidence 677777766665443
No 27
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=87.13 E-value=1.6 Score=47.25 Aligned_cols=52 Identities=23% Similarity=0.507 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccccc
Q psy15471 130 TDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDG 181 (550)
Q Consensus 130 w~l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~g 181 (550)
+...++.++.|++.......|.|...|...+..++..+..+...+..+...+
T Consensus 135 ~~~~~~~~~~~~i~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 186 (440)
T PF02133_consen 135 LPLWVCFFIFWLIQTLFAIYGMKALRRLAVIAAPILLVVFIGMLIWALSKAG 186 (440)
T ss_dssp ----HHHHHHHHHHHHHHCTHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCT
T ss_pred hhHHHHHHHHHHHHHHHHhcCHHHHHhHHhhhhHHHHhhhhheeEEEeecCC
Confidence 3455677888888888888999988887777766655554455555444333
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=87.06 E-value=40 Score=36.88 Aligned_cols=85 Identities=18% Similarity=0.302 Sum_probs=43.7
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccc--cc--ccccceeeeecCcc--ccc--chHHHHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ--DG--AISGVLYFITPTWE--KLL--DIQVWHAAAGQMFF 212 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL--~g--a~~Gl~~~~~pd~~--~L~--~~~vW~~A~~Q~ff 212 (550)
+++.....+|+|..+|+..+...+=.+.++++.+-++-+ .+ ..++...-+.+.|+ ... ....+..|+..++|
T Consensus 143 ~~~~~iN~~g~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~g~~~~~~~~~~~~~ 222 (469)
T PRK11049 143 LLLLSLNLATVKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHLWNDGGMFPKGLSGFFAGFQIAVF 222 (469)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCcccccCCCCCCCcccHHHHHHHHHHHHH
Confidence 345567778999999987665443333333333222211 11 11111111121111 110 11346788899999
Q ss_pred Hhhcccchhhhccc
Q psy15471 213 SLSVSMGGLIMYSS 226 (550)
Q Consensus 213 Sl~ig~G~li~~aS 226 (550)
+. .|+-...+++.
T Consensus 223 af-~G~e~~~~~a~ 235 (469)
T PRK11049 223 AF-VGIELVGTTAA 235 (469)
T ss_pred HH-hcHHHHHHHHH
Confidence 98 48887777665
No 29
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=86.31 E-value=9.6 Score=40.94 Aligned_cols=116 Identities=16% Similarity=0.065 Sum_probs=60.0
Q ss_pred HHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhh
Q psy15471 144 VLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIM 223 (550)
Q Consensus 144 ~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~ 223 (550)
...+.+|.|..+|+..++++.-.+.++.+.+.. .|.. +.=...-.|+... ..+....|.-..++|.+ +++.+-+
T Consensus 134 ~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~l--ip~~-~~~~L~~~p~~~~--~~~~i~~alpv~~~SF~-~~~iIss 207 (397)
T TIGR00814 134 VAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYL--IPHW-NGANLTTFPSFNG--FLKTLWLTIPVMVFSFN-HSPIISS 207 (397)
T ss_pred HHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHc-CHHHHhcCCcccc--hHHHHHHHHHHHHHHHH-ccccchH
Confidence 456677999999998766543333333333322 2221 1111111232211 12334578888999997 8888888
Q ss_pred cc-ccccCC---Cccccce-eehhHHHHHHHHHHHHHHHHHHHHHHh
Q psy15471 224 YS-SYNDFS---NNVYRDA-LVVSVMDTITSIMSGIVTFSILGAMAH 265 (550)
Q Consensus 224 ~a-Syn~~~---~n~~rda-~~v~~~n~~~silag~~ifs~lG~~a~ 265 (550)
++ +|++.. ++..|.+ -.+.....+.-++-.+.+|+.+|.+.+
T Consensus 208 l~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~ 254 (397)
T TIGR00814 208 FAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSP 254 (397)
T ss_pred HHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH
Confidence 87 663332 2112222 222223333444455667777776543
No 30
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=85.96 E-value=8.5 Score=41.30 Aligned_cols=178 Identities=16% Similarity=0.135 Sum_probs=91.5
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeee-cCcccccchHHHHHHHHHHHHHhhcccc
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFIT-PTWEKLLDIQVWHAAAGQMFFSLSVSMG 219 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~-pd~~~L~~~~vW~~A~~Q~ffSl~ig~G 219 (550)
++....++.|-|..+|+..+++..-.+.+..+.+.. .|..... .+.. ++- -.+.+....+.-=.++|++ -..
T Consensus 129 ~i~~~iv~~g~~~v~~~n~~lv~~~i~~~~~l~~~~--~p~~~~~--~L~~~~~~--~~~~~~~~~~lPv~~~Sf~-f~~ 201 (394)
T PF03222_consen 129 IIFGGIVYFGTKAVDRINRVLVFGMIISFIILVVYL--IPHWNPS--NLLDAPPS--PSDWSYILPALPVLVFSFG-FHN 201 (394)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--hhhcCHH--Hhhccccc--cccHHHHHHHHHHHHHHHH-HHh
Confidence 445556677888888887766544433333333332 2221111 1111 111 1234444578888888887 467
Q ss_pred hhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchHH
Q psy15471 220 GLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLW 299 (550)
Q Consensus 220 ~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lw 299 (550)
.+.++..|.+.+.+-.|.++++...-.++-. -+..++++|.+..+ +..++.++|.+. ...-+++++...++..
T Consensus 202 ivPsl~~~~~~d~~k~~~ai~~Gs~i~lv~y--l~w~~~~lg~l~~~---~~~~~~~~~~~~--~~~~~~~~~~~~s~~i 274 (394)
T PF03222_consen 202 IVPSLVKYLGGDPKKIRKAIIIGSLIPLVMY--LLWVFSILGSLPRE---QFAEAIAQGGNV--SALVSALANVSGSPWI 274 (394)
T ss_pred hhHHHHHHhCccHHHHHHHHHHHHHHHHHHH--HHHHHHHHhcCCHH---HHHHHHhcCCCh--HHHHHHHHhhcCCcHH
Confidence 7888888888776666676666544333322 23456677643321 111122233221 1222344554444444
Q ss_pred HHHHHHHHHHHhhhcccccchhhHHHHHhhhcc
Q psy15471 300 SILFFLMLFVLGLDSEFALLENVLTSVSDEFLV 332 (550)
Q Consensus 300 s~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~ 332 (550)
+.+.-+--+++=.+|-++..-.....+.|.++.
T Consensus 275 ~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~ 307 (394)
T PF03222_consen 275 SILGSIFAFFAIATSFLGVYLGLFDFLADLFKL 307 (394)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 443333333444566666666667777887753
No 31
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=85.54 E-value=2 Score=47.02 Aligned_cols=90 Identities=17% Similarity=0.361 Sum_probs=50.4
Q ss_pred HHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhh-c---cccccccc--------ceeeeecCcccc--cchHHHH
Q psy15471 139 SWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG-L---LQDGAISG--------VLYFITPTWEKL--LDIQVWH 204 (550)
Q Consensus 139 ~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~-l---tL~ga~~G--------l~~~~~pd~~~L--~~~~vW~ 204 (550)
.++++......|+|..||+.+....+-.+.++.+.+-+ . .-++..++ .+..+.|+.++- .+.....
T Consensus 124 ~~~~~~~l~~~gv~~~~~~~~~~~~i~~~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (478)
T PF00324_consen 124 FILLITLLNLFGVRVSGKIEFILTIIKLIALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGFTDPSGGGFSGFF 203 (478)
T ss_pred hhhhhhhhhhhhhhccchHHHHHHHHhhhHhhhhhhhcccccccccCCCcccccccccccccccccccccccccchhHHH
Confidence 44555667788999999976665555544444444433 1 11222222 112233331111 1234567
Q ss_pred HHHHHHHHHhhcccchhhhcccccc
Q psy15471 205 AAAGQMFFSLSVSMGGLIMYSSYND 229 (550)
Q Consensus 205 ~A~~Q~ffSl~ig~G~li~~aSyn~ 229 (550)
.|+..++++. .|+.....+|.=.|
T Consensus 204 ~~~~~~~~af-~G~e~~a~~a~E~k 227 (478)
T PF00324_consen 204 AALVFAFFAF-VGFESIAILAEEAK 227 (478)
T ss_pred Hhhhhhhccc-ccccccccccccCC
Confidence 8889999998 48888777776444
No 32
>PRK09928 choline transport protein BetT; Provisional
Probab=85.50 E-value=76 Score=36.53 Aligned_cols=78 Identities=22% Similarity=0.204 Sum_probs=54.6
Q ss_pred chhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhc-c------cchhhhcccccc
Q psy15471 157 VVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSV-S------MGGLIMYSSYND 229 (550)
Q Consensus 157 v~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~i-g------~G~li~~aSyn~ 229 (550)
..++.+++.--+-+.++..++..| +.||.+|-...=...+.-..|..+.||-.|+ + .|..++|.+|++
T Consensus 96 ~sW~aMLFaAGmGigLmfwgvaEP-----~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr~ 170 (679)
T PRK09928 96 LSWAAMLFAAGIGIDLMFFSVAEP-----VTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYRY 170 (679)
T ss_pred chHHHHHHHHhhhhhheeehHHhH-----HHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhcC
Confidence 366677766666677777776666 5667677543323456778899999998887 2 377788999998
Q ss_pred CCCcccccee
Q psy15471 230 FSNNVYRDAL 239 (550)
Q Consensus 230 ~~~n~~rda~ 239 (550)
+..--.|+++
T Consensus 171 ~~pl~issal 180 (679)
T PRK09928 171 NLPLTIRSAL 180 (679)
T ss_pred CCCCchhHhh
Confidence 8775555554
No 33
>TIGR00930 2a30 K-Cl cotransporter.
Probab=85.48 E-value=89 Score=37.67 Aligned_cols=36 Identities=11% Similarity=0.193 Sum_probs=23.2
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhh
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ 176 (550)
+++.++.+.|+|..+|+..++...-.+.++.+++-+
T Consensus 212 ~ll~~In~~Gvk~~ak~q~vl~vi~ll~ll~~iig~ 247 (953)
T TIGR00930 212 VVLLGISFAGMEWENKAQVLFLVIVLLSILNIFVGT 247 (953)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence 345556678999999998776655444444444433
No 34
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=85.30 E-value=10 Score=40.44 Aligned_cols=86 Identities=17% Similarity=0.237 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHH
Q psy15471 132 LAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMF 211 (550)
Q Consensus 132 l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~f 211 (550)
+.+.-++...+++....|+.|...++-+++.|...+.+.++.+.++..|.... -.|. +...+.+.+.+++.|..
T Consensus 111 l~i~siiff~i~~~l~~~~~k~~~~iGk~LTP~lLi~l~~lii~g~~~p~g~~-----~~~~-~~~~~~~~f~~g~l~GY 184 (378)
T TIGR00796 111 LFIFSLIFFAVVLLLSLNPSKLIDRVGKFLTPALLVTLLALIIKALLWPAGPI-----LAAS-GAYASQQAFSKGFLEGY 184 (378)
T ss_pred HHHHHHHHHHHHHHHHcCcccHHHHhHHHHHHHHHHHHHHHHHHHHHcCCCCc-----CCcc-cccccccHHHHHHHHHH
Confidence 33444445566777788999887788888888888888888888887653211 1121 11111155778888887
Q ss_pred HHhh----cccchhhh
Q psy15471 212 FSLS----VSMGGLIM 223 (550)
Q Consensus 212 fSl~----ig~G~li~ 223 (550)
++.. +.+|.++.
T Consensus 185 ~TmD~laal~fg~iiv 200 (378)
T TIGR00796 185 LTMDALAALVFGIIVV 200 (378)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776 34454443
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=84.03 E-value=70 Score=34.91 Aligned_cols=101 Identities=13% Similarity=0.176 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-cccccccceeeee-----cCcccccchHHHH
Q psy15471 131 DLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QDGAISGVLYFIT-----PTWEKLLDIQVWH 204 (550)
Q Consensus 131 ~l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~ga~~Gl~~~~~-----pd~~~L~~~~vW~ 204 (550)
.......+.|++.+ ...+|+|..+|+..+....-.+.++++.+-++. ..+..-.- .++. +.++. ....+.
T Consensus 123 ~~~~~~~~~~~~~~-ln~~Gv~~~~~i~~i~~~~ki~~l~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~~~ 198 (468)
T TIGR03810 123 SIIGASVLLWCVHF-LVLRGVEGAAFINTITTIAKLVPLFVFIVIGIFAFKGDTFTN-DFWGNANGGFSLGS--VMTQVK 198 (468)
T ss_pred HHHHHHHHHHHHHH-HHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcHhhcCc-cccccccccCcccc--HHHHHH
Confidence 34445555555554 446999999988766544332222222221111 11110000 0010 00111 123345
Q ss_pred HHHHHHHHHhhcccchhhhccccccCCCcccc
Q psy15471 205 AAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236 (550)
Q Consensus 205 ~A~~Q~ffSl~ig~G~li~~aSyn~~~~n~~r 236 (550)
.++..++|++ .|+-....++...|.+.|+.|
T Consensus 199 ~~~~~~~~~f-~G~e~~~~~a~e~k~~k~ip~ 229 (468)
T TIGR03810 199 NMMLVTVWVF-IGIEGASMLSARAEKRSDVGK 229 (468)
T ss_pred HHHHHHHHHH-HhHhHHhhhHhhccCcccchH
Confidence 7778888888 588777777765554444433
No 36
>PRK10746 putative transport protein YifK; Provisional
Probab=83.97 E-value=70 Score=34.90 Aligned_cols=85 Identities=13% Similarity=0.142 Sum_probs=43.6
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHh-------hhcccccccccceeeeecCcccc-cchHHHHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV-------TGLLQDGAISGVLYFITPTWEKL-LDIQVWHAAAGQMFF 212 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~i-------r~ltL~ga~~Gl~~~~~pd~~~L-~~~~vW~~A~~Q~ff 212 (550)
+++.....+|+|..||+-.....+-.+.++++.+ .+..-++...+.++ +.|+..-. ...+.+..|+.+++|
T Consensus 133 ~~~~~lN~~gv~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~-~~~~~g~~~~g~~g~~~~~~~~~f 211 (461)
T PRK10746 133 ALVALANLAAVRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSN-LTEHGGFFAGGWKGFLTALCIVVA 211 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccc-ccCCCCcCcccHHHHHHHHHHHHH
Confidence 4455567789999998765544332222211111 11111111112222 22221111 123567789999999
Q ss_pred Hhhcccchhhhcccc
Q psy15471 213 SLSVSMGGLIMYSSY 227 (550)
Q Consensus 213 Sl~ig~G~li~~aSy 227 (550)
+. .|+-.....+.=
T Consensus 212 af-~G~e~v~~~a~E 225 (461)
T PRK10746 212 SY-QGVELIGITAGE 225 (461)
T ss_pred Hh-cCHHHHHHHHHH
Confidence 98 688777776663
No 37
>PRK09950 putative transporter; Provisional
Probab=83.25 E-value=2.3 Score=46.99 Aligned_cols=96 Identities=15% Similarity=0.175 Sum_probs=54.8
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cC-CCccccc-cCCCceEeehhH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LN-VPINQVV-KEGPGLAFVAYP 287 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~-~~v~~v~-~~G~~L~Fi~~P 287 (550)
+.+.-.|..++==| |....|+-+...+ +.--+.+++-|++.|-.|-. .| .+..+.. ++|+ -.+.-
T Consensus 323 awaPfvG~FiARIS----rGRTIRe~ilg~l---~~psl~~~~wf~ifGg~ai~l~~~g~~~~~~~~~~~~~---~~a~~ 392 (506)
T PRK09950 323 SYTPGVAMFVTRVS----RGRKIKEVIWGLI---LGSSVGCWFFFGVLESYAIHQFINGVINVPQILNTLGG---ETAVQ 392 (506)
T ss_pred HHHHHHHHHhhhhc----CCcCHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHccchhHHHHHHccCc---chHHH
Confidence 45555677776445 3345666544333 33333345556666644432 22 2333323 3343 34556
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhhhccccc
Q psy15471 288 EALLRLPFPQLWSILFFLMLFVLGLDSEFAL 318 (550)
Q Consensus 288 ~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~ 318 (550)
+.++++|.+.+.+.++.+.+++.=.+|.=+.
T Consensus 393 ~~l~~lP~~~i~~~l~~vl~~if~vTs~DS~ 423 (506)
T PRK09950 393 QLLSSLPAGKLFLAAYLGIMIIFLASHMDAV 423 (506)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 7899999999999998887776655554443
No 38
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=81.83 E-value=20 Score=39.00 Aligned_cols=99 Identities=16% Similarity=0.182 Sum_probs=57.6
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchh
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGL 221 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~l 221 (550)
++.+...-|.|...|+-+++++.-.++...+..+.+...+..++ +..+.- .++-.|..|..-++=+ =+++|.+
T Consensus 140 l~~l~~ifG~r~l~~l~~~a~~~~~~lf~~l~~~~~~~~~~~~~---~~~~~~---~~~~~fl~a~slv~g~-~~sw~~~ 212 (442)
T COG1457 140 LMTLVTIFGYRALHKLERIAVPLLLLLFLYLLALLFRSKGGLDA---LWVKGP---TSPLSFLSALSLVIGS-FASWGPY 212 (442)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccce---eeccCC---CcchhHHHHHHHHHHH-HHhhhhh
Confidence 34444556777777887777777766666666666654333333 232211 2334566666655444 3556665
Q ss_pred hh-ccccccCCCccccceeehhHHHHHHH
Q psy15471 222 IM-YSSYNDFSNNVYRDALVVSVMDTITS 249 (550)
Q Consensus 222 i~-~aSyn~~~~n~~rda~~v~~~n~~~s 249 (550)
.+ |+=|.|.+.+ +|+...+....+.+
T Consensus 213 ~aDysRy~~~~t~--~~~~~~~~~G~~l~ 239 (442)
T COG1457 213 AADYSRYAPSPTP--SKAFLAAVLGFFLG 239 (442)
T ss_pred hhhhhhhcCCCch--HHHHHHHHHHHHHH
Confidence 54 5566677766 77777766555443
No 39
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=81.46 E-value=9.3 Score=41.40 Aligned_cols=197 Identities=13% Similarity=0.219 Sum_probs=97.8
Q ss_pred HHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHh--
Q psy15471 137 AVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSL-- 214 (550)
Q Consensus 137 ~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl-- 214 (550)
++-..+++....|--|-.-++-+++.|...+.+.++.+.++.-|-.... .|+ +. ...+...+...|-..+.
T Consensus 123 ~iFF~i~~~l~~~p~kivd~iGk~LTP~LL~~l~ilii~~i~~p~g~~~-----~~~-~~-y~~~~f~~Gf~eGY~TMD~ 195 (427)
T PF05525_consen 123 IIFFAITYLLSLNPSKIVDRIGKFLTPILLILLAILIIKGIFSPIGPPQ-----APS-GA-YASNPFFKGFLEGYQTMDA 195 (427)
T ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCcc-----ccc-hh-hhhhHHHHHHHHHHhhhhH
Confidence 3334455555566555555555567788888889999998876532211 111 00 01122333332222222
Q ss_pred --hcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHH---HHHHHHHHHhhcCCCccccccCCCceEeehhHHH
Q psy15471 215 --SVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIV---TFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEA 289 (550)
Q Consensus 215 --~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~---ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a 289 (550)
++.+|.++.-+= .++..+-.|+.. -.....+++|++. |+.-++|+.........+ .++|..+ +.++
T Consensus 196 laal~Fg~iIi~~i-~~~g~~~~k~~~---~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~~~-~~~g~~l----L~~i 266 (427)
T PF05525_consen 196 LAALAFGIIIINAI-RQKGYKDKKEIK---KYTIKAGLIAGILLALIYGGLAYLGATSSGSFPD-DINGAEL----LSQI 266 (427)
T ss_pred HHHHHHHHHHHHHH-HHhCCCCHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHccCCcccccC-CCCHHHH----HHHH
Confidence 334555554322 222111112221 1122344444443 444444443322211111 1223221 2222
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhh
Q psy15471 290 LLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIG 352 (550)
Q Consensus 290 ~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~g 352 (550)
-.++ .++.-.+++=++.+++.+++.++++-+.-.-+.|.+|++ +-+..+.+.|++.++++
T Consensus 267 ~~~~-~G~~G~~ll~iiv~lACLTTaIGL~~a~a~yf~~~~~ki--sY~~~v~i~~i~S~~ia 326 (427)
T PF05525_consen 267 ANHL-FGSAGQILLGIIVFLACLTTAIGLISACAEYFSELFPKI--SYKVWVIIFTIFSFIIA 326 (427)
T ss_pred HHHH-cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--ChHHHHHHHHHHHHHHH
Confidence 2222 567777778888888889999999888888888877632 33345556666666665
No 40
>PRK09928 choline transport protein BetT; Provisional
Probab=81.11 E-value=1.2 Score=50.72 Aligned_cols=96 Identities=14% Similarity=0.087 Sum_probs=54.1
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhc---C-CCccccccCCCceEeehhHH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDL---N-VPINQVVKEGPGLAFVAYPE 288 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~---~-~~v~~v~~~G~~L~Fi~~P~ 288 (550)
+.+.-.|..++==| +....|+-++.++ +.-.+.+++-|++.|.-|-.. | .++.+...+++. .++-+
T Consensus 331 aWaPFVGlFIARIS----RGRTIREfilgvl---lvPsl~~~~WfsIfGgsal~l~~~g~~~l~~~~~~~~~---~alf~ 400 (679)
T PRK09928 331 AWSPFVGLFLARIS----RGRTIRQFVLGTL---IIPFTFTLLWLSIFGNSALYEIIHGNAAFAEEAMAHPE---RGFYS 400 (679)
T ss_pred HHHHHHHHHHhhhc----CCccHHHHHHHHH---HHHHHHHHHHHHHHhhHHHHHHHcCCccHHHHhhcchh---hHHHH
Confidence 44555666666444 3334565443332 333444455677777554321 2 233222223432 45668
Q ss_pred HHhcCCCchHHHHHHHHHHHHHhhhccccc
Q psy15471 289 ALLRLPFPQLWSILFFLMLFVLGLDSEFAL 318 (550)
Q Consensus 289 a~~~~p~~~lws~lFF~~l~~~gl~S~i~~ 318 (550)
.+.++|.+.+.++++.+++++.=++|.=+.
T Consensus 401 ~l~~lP~~~i~~~l~~il~~iFfvTSaDS~ 430 (679)
T PRK09928 401 LLAQYPAFTFSASVATITGLLFYVTSADSG 430 (679)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHhcchHH
Confidence 899999999999888887776655554443
No 41
>PRK10238 aromatic amino acid transporter; Provisional
Probab=80.10 E-value=95 Score=33.78 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=43.0
Q ss_pred HHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhc----c-cccccccceeee-ecCcccccchHHHHHHHHHHHHH
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL----L-QDGAISGVLYFI-TPTWEKLLDIQVWHAAAGQMFFS 213 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~l----t-L~ga~~Gl~~~~-~pd~~~L~~~~vW~~A~~Q~ffS 213 (550)
++++.....+|+|..||+..+...+-.+.++++.+-++ . -++.......++ .++|.. .....+..++.+++|+
T Consensus 134 ~~~~~~lN~~gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~a 212 (456)
T PRK10238 134 FVVINAINLTNVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNLWDQGGFLP-HGFTGLVMMMAIIMFS 212 (456)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCccccccCCCCCCcc-ccHHHHHHHHHHHHHH
Confidence 34566777889999999876654444333222221111 1 011111122222 112211 0112345677788888
Q ss_pred hhcccchhhhcccccc
Q psy15471 214 LSVSMGGLIMYSSYND 229 (550)
Q Consensus 214 l~ig~G~li~~aSyn~ 229 (550)
. .|+-.....+.-.|
T Consensus 213 f-~G~e~~~~~aeE~k 227 (456)
T PRK10238 213 F-GGLELVGITAAEAD 227 (456)
T ss_pred h-cCHHHHHHHHHhhc
Confidence 7 67766666665443
No 42
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=79.78 E-value=16 Score=39.70 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=93.9
Q ss_pred HHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccc-cc-eee-eecCcccccchHHHHHHHHHHHH
Q psy15471 136 LAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAIS-GV-LYF-ITPTWEKLLDIQVWHAAAGQMFF 212 (550)
Q Consensus 136 l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~-Gl-~~~-~~pd~~~L~~~~vW~~A~~Q~ff 212 (550)
-++-..+++....|--|-.-++-+++.|...+++.++.+.++.-|-... .- .-| -.|=.+-+.+.--=.||+.-.
T Consensus 126 s~iFF~i~~~l~l~p~klvd~iGK~LTP~LL~~l~~lii~~i~~p~g~~~~~~~~y~~~~f~~Gf~eGY~TMDalaal-- 203 (439)
T PRK15433 126 SLVYFAIVILVSLYPGKLLDTVGNFLAPLKIIALVILSVAAIVWPAGSISTATEAYQNAAFSNGFVNGYLTMDTLGAM-- 203 (439)
T ss_pred HHHHHHHHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHHhcCCCCCCCcchhhhhhhHHHHHHhhHHHHHHHHHH--
Confidence 3334455555555554544444555778888888888888887663221 00 001 111111222221125555533
Q ss_pred Hhhcccchhhhcccccc---CCCccccceeehhHHHHHHHHHHHH---HHHHHHHHHHhhcCCCccccccCCCceEeehh
Q psy15471 213 SLSVSMGGLIMYSSYND---FSNNVYRDALVVSVMDTITSIMSGI---VTFSILGAMAHDLNVPINQVVKEGPGLAFVAY 286 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~---~~~n~~rda~~v~~~n~~~silag~---~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~ 286 (550)
.+|.++.-+=.++ .++...|... ..+++|+. .|+.-++|+........++ .++|.. .
T Consensus 204 ----~Fg~iii~~i~~~G~~~~~~~~k~t~-------~ag~ia~~~L~~vY~gL~~lGa~s~~~~~~-~~~g~~-----i 266 (439)
T PRK15433 204 ----VFGIVIVNAARSRGVTEARLLTRYTV-------WAGLMAGVGLTLLYLALFRLGSDSASLVDQ-SANGAA-----I 266 (439)
T ss_pred ----HHHHHHHHHHHHcCCCCHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcCCcccccC-CCcHhH-----H
Confidence 4444444322111 1112222222 23344443 3444555554322211211 113332 3
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhh
Q psy15471 287 PEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIG 352 (550)
Q Consensus 287 P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~g 352 (550)
|....+.-.++.-.+++=+.++++-+++.++++-....-+.+.++ .+.+..+.+.|++.++++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~---isY~~~v~i~~l~S~~lS 329 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP---LSYRTLVFILGGFSMVVS 329 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC---CcHHHHHHHHHHHHHHHH
Confidence 444433335666677777777778888888875555555555443 244455556666666654
No 43
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=74.99 E-value=66 Score=35.16 Aligned_cols=24 Identities=8% Similarity=0.067 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHhhcccchhhhccc
Q psy15471 202 VWHAAAGQMFFSLSVSMGGLIMYSS 226 (550)
Q Consensus 202 vW~~A~~Q~ffSl~ig~G~li~~aS 226 (550)
.+..++.+++|++ .|+.....++.
T Consensus 218 ~~~~~~~~~~fsf-~G~e~~~~~a~ 241 (482)
T TIGR00907 218 AFLLGLLNPAWSM-TGYDGTAHMAE 241 (482)
T ss_pred hhhhhhhhhHHHh-cCcchhhHHHH
Confidence 4566677777887 57766666655
No 44
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=74.15 E-value=9.1 Score=42.38 Aligned_cols=95 Identities=19% Similarity=0.211 Sum_probs=53.7
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cC-CCccccc-cCCCceEeehhH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LN-VPINQVV-KEGPGLAFVAYP 287 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~-~~v~~v~-~~G~~L~Fi~~P 287 (550)
+.+.-.|..++==| |-...|+-++..+ +.--+.+++-|++.|-.|-. .| .++.+.. ++|+. .+.-
T Consensus 326 awaPfvG~FiARIS----rGRTIRE~ilg~l---~~psl~~~~wf~ifGg~al~~~~~g~~~~~~~~~~~~~~---~alf 395 (504)
T PRK03356 326 IYAIQMSIFLARIS----RGRTVRELCFGMV---LGLTASTWILWTVLGSNTLLLMDKNIINIPNLIEQYGVA---RAII 395 (504)
T ss_pred HHHHHHHHHHHHHc----CCCcHHHHhhhhh---HHHHHHHHHHHHHHhHHHHHHHHcCchhHHHHHhccChh---hHHH
Confidence 45555677776445 3445666554443 33333445556666644332 22 2333322 33432 3556
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhhhcccc
Q psy15471 288 EALLRLPFPQLWSILFFLMLFVLGLDSEFA 317 (550)
Q Consensus 288 ~a~~~~p~~~lws~lFF~~l~~~gl~S~i~ 317 (550)
+.++++|.+.+.++++.+++++.=++|.=+
T Consensus 396 ~~l~~lPl~~i~~~l~~il~~if~vTsaDS 425 (504)
T PRK03356 396 ETWAALPLSTATMWGFFILCFIATVTLINA 425 (504)
T ss_pred HHHHHCcHHHHHHHHHHHHHHHHHHhhhhH
Confidence 889999999999888888777655555443
No 45
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=73.86 E-value=1.6e+02 Score=33.13 Aligned_cols=85 Identities=12% Similarity=0.176 Sum_probs=49.3
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccccccccccee--eee-cCcccccchHHHHHHHHHHHHHhhccc
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLY--FIT-PTWEKLLDIQVWHAAAGQMFFSLSVSM 218 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~--~~~-pd~~~L~~~~vW~~A~~Q~ffSl~ig~ 218 (550)
++.....+|+|.++|+..+...+-.++++++.+-++.-. ..+.... ... .++... ....+..|+..++|+. .|+
T Consensus 171 l~~~ln~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~-~~~~~~~~~~~~~~~f~p~-g~~g~l~g~~~~~faf-~Gf 247 (557)
T TIGR00906 171 LLAVLLSFGVKESAWVNKIFTAINILVLLFVIIAGFTKA-DVANWSITEEKGAGGFMPY-GFTGVLSGAATCFFAF-IGF 247 (557)
T ss_pred HHHHHHHhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhC-CchhccccccccCCCCCCc-chHHHHHHHHHHHHHH-hhH
Confidence 344677899999999987776665555554444443211 1111100 000 012111 2356788888999998 788
Q ss_pred chhhhcccccc
Q psy15471 219 GGLIMYSSYND 229 (550)
Q Consensus 219 G~li~~aSyn~ 229 (550)
-...+++.-.|
T Consensus 248 d~v~~~aeE~k 258 (557)
T TIGR00906 248 DAIATTGEEVK 258 (557)
T ss_pred HHHHHhHHhcc
Confidence 88877776444
No 46
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=73.30 E-value=1.4e+02 Score=32.31 Aligned_cols=38 Identities=21% Similarity=0.474 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHH-HHhccccccccchhhhhhhHHHHHHHH
Q psy15471 134 ICLAVSWIVVVL-CLMKGIKTSGKVVYFAATFPYVILVTL 172 (550)
Q Consensus 134 ~~l~~~w~iv~~-~~~kGvk~~GKv~~~~~~~p~v~l~il 172 (550)
.+.++.|.+... ....|.|..-+..+.. +.+.++++.+
T Consensus 141 ~~~~i~~~l~~~~~~~~g~~~~~~~~~~a-~~~~~~~~~~ 179 (442)
T TIGR00800 141 ICFIIFWALVLVFLFFFGYKIRHLFEWLA-VVPPFAAFGM 179 (442)
T ss_pred HHHHHHHHHHHHHHHcCHHHHHHHHHHHH-HHHHHHHHHH
Confidence 455666766664 3445555333344333 3333333333
No 47
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=72.59 E-value=57 Score=36.20 Aligned_cols=160 Identities=21% Similarity=0.136 Sum_probs=86.6
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCC----cc-ccccCCCceEeehhH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVP----IN-QVVKEGPGLAFVAYP 287 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~----v~-~v~~~G~~L~Fi~~P 287 (550)
|.++..|..++-=|. -.-.|+-+. .-.+...+.+.+-|++.|.-|-++... +. .+..+|+.. ++=
T Consensus 326 sWsPfVG~FIARISr----GRTIREfi~---gvl~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e~---alf 395 (537)
T COG1292 326 SWSPFVGMFIARISR----GRTIREFIV---GVLLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPET---ALF 395 (537)
T ss_pred HHhHHHHHHHHHHhC----CccHHHHHH---HHHHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchhh---HHH
Confidence 567777888876663 223444322 222344444556688888766544322 11 112234332 344
Q ss_pred HHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhh
Q psy15471 288 EALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLM 367 (550)
Q Consensus 288 ~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~ 367 (550)
+.++++|.+++-++++.+.++...++|.=+..-++-+.-...- .. +++.....-|+++-+++..+...+| ++.+
T Consensus 396 ~~l~~lPl~~v~~~~~~~~i~~FfiTsaDS~s~vl~~~ss~~~--~~-pp~~~r~~W~v~~~~ia~~lL~~gg---l~aL 469 (537)
T COG1292 396 QVLSHLPLGTLTSLLALLVIAIFFVTSADSGSYVLAMISSRGG--ED-PPRWVRVFWGVLIGLIAAVLLLIGG---LEAL 469 (537)
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHhhccchHHHHHHHHhccCC--CC-ChHHHHHHHHHHHHHHHHHHHHhCC---HHHH
Confidence 6789999999999999998888888776654333222221111 11 1222333444444445555555566 6667
Q ss_pred hhhhhhHHHHHHHHHHHhhhh
Q psy15471 368 DVYGGGTAVLFIAIFECVSLV 388 (550)
Q Consensus 368 D~~~~~~~l~~~~~~e~i~v~ 388 (550)
..-+.-..+++..+..+...+
T Consensus 470 qt~~ii~alPF~~vll~~~~s 490 (537)
T COG1292 470 QTAAIITALPFSLVLLVMMFS 490 (537)
T ss_pred HHHHHHHHccHHHHHHHHHHH
Confidence 666555555555554444443
No 48
>PRK10580 proY putative proline-specific permease; Provisional
Probab=71.54 E-value=1.6e+02 Score=32.02 Aligned_cols=87 Identities=8% Similarity=0.184 Sum_probs=44.2
Q ss_pred HHHHHHHHhccccccccchhhhhhhHHHHHHHH-------Hhhhcccccccccceeeeec--CcccccchHHHHHHHHHH
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATFPYVILVTL-------LVTGLLQDGAISGVLYFITP--TWEKLLDIQVWHAAAGQM 210 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il-------~ir~ltL~ga~~Gl~~~~~p--d~~~L~~~~vW~~A~~Q~ 210 (550)
.++......+|+|..+|+......+=.+.++++ .+.+..-++...+....+.+ .|.+ ....+..|+..+
T Consensus 131 ~~l~~~ln~~gv~~~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~~~~~~~~ 208 (457)
T PRK10580 131 VLIICAVNLMSVKVFGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHNLWSNGGFFSN--GWLGMVMSLQMV 208 (457)
T ss_pred HHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccCCCCCCCCc--chHHHHHHHHHH
Confidence 345666777999999987654433222222111 11111111111222222211 1111 123567788888
Q ss_pred HHHhhcccchhhhcccccc
Q psy15471 211 FFSLSVSMGGLIMYSSYND 229 (550)
Q Consensus 211 ffSl~ig~G~li~~aSyn~ 229 (550)
+|+. .|+.....++.-.|
T Consensus 209 ~fsf-~G~e~~~~~a~E~k 226 (457)
T PRK10580 209 MFAY-GGIEIIGITAGEAK 226 (457)
T ss_pred HHHH-hCHHHHHHHHHHhc
Confidence 9988 78888777776443
No 49
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=71.04 E-value=1.6e+02 Score=32.07 Aligned_cols=88 Identities=10% Similarity=0.031 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCccccc--chHHHHHHHHHHHHHhh
Q psy15471 138 VSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLL--DIQVWHAAAGQMFFSLS 215 (550)
Q Consensus 138 ~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~--~~~vW~~A~~Q~ffSl~ 215 (550)
+..++..+...+|+|..+|+..+...+-.+.++++.+-.+... .++-++.++.+++.-. ....|..+...++|++
T Consensus 150 ~~~~~~~~in~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~--~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~f- 226 (475)
T TIGR03428 150 VLLVLTTVINCIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHA--QRGPGVVFDTSVTGASPGYYGAFLVSGLMAAYVM- 226 (475)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CCCcceeeecCCCCCCccHHHHHHHHHHHHHHHh-
Confidence 3444566677889999888765544332222222222111111 1122233332221100 1235667777788877
Q ss_pred cccchhhhccccc
Q psy15471 216 VSMGGLIMYSSYN 228 (550)
Q Consensus 216 ig~G~li~~aSyn 228 (550)
.|+.....++.=.
T Consensus 227 ~G~e~~~~~aeE~ 239 (475)
T TIGR03428 227 VGFGSAGELSEET 239 (475)
T ss_pred cCcchHHHHHHHh
Confidence 6888777776533
No 50
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=69.48 E-value=1.8e+02 Score=31.79 Aligned_cols=38 Identities=29% Similarity=0.524 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHhccccccccchhhhh----hhHHHHHHHH
Q psy15471 134 ICLAVSWIVVVLCLMKGIKTSGKVVYFAA----TFPYVILVTL 172 (550)
Q Consensus 134 ~~l~~~w~iv~~~~~kGvk~~GKv~~~~~----~~p~v~l~il 172 (550)
..+.+.|+ ..+...+|+|..||+..+.. .+|.++++++
T Consensus 126 ~~l~~~~~-~~~in~~gv~~~~~i~~~~~~~~~ii~~~~~ii~ 167 (474)
T TIGR03813 126 SVLFVYWL-ATFIALRGVAAFTKVAKWGGIVGTIIPAAILVIL 167 (474)
T ss_pred HHHHHHHH-HHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444 44567889999999876542 3444444443
No 51
>KOG1287|consensus
Probab=66.44 E-value=1.8e+02 Score=32.10 Aligned_cols=77 Identities=16% Similarity=0.080 Sum_probs=45.4
Q ss_pred HHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCc--ccccchHHHHHHHHHHHHHhhcccchhh
Q psy15471 145 LCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTW--EKLLDIQVWHAAAGQMFFSLSVSMGGLI 222 (550)
Q Consensus 145 ~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~--~~L~~~~vW~~A~~Q~ffSl~ig~G~li 222 (550)
..-.-.+|...++.-+....+++.+..+.+-|+- +-.....+++-.+++ ++ .+...|.-|+-|.+|++ -||=.+=
T Consensus 148 ~~n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~-~~~~g~~~~~~~~~f~g~~-~~~g~i~lafysglfa~-~GWd~lN 224 (479)
T KOG1287|consen 148 LINSFSVKWATRVQIVFTIAKLLALLLIIITGLY-LLFWGSTQNFENSEFEGSD-TDVGNIALAFYSGLFAF-SGWDYLN 224 (479)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHhchh-eeEecccccccccccccCc-CchHHHHHHHHHhhhcc-cCchhhc
Confidence 3344577767788777778888888777766655 322222333333322 22 34556888888888887 3554443
Q ss_pred hc
Q psy15471 223 MY 224 (550)
Q Consensus 223 ~~ 224 (550)
..
T Consensus 225 ~v 226 (479)
T KOG1287|consen 225 YV 226 (479)
T ss_pred cc
Confidence 33
No 52
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=65.24 E-value=1.4e+02 Score=31.25 Aligned_cols=38 Identities=18% Similarity=0.105 Sum_probs=30.5
Q ss_pred Cc-hHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhcc
Q psy15471 295 FP-QLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLV 332 (550)
Q Consensus 295 ~~-~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~ 332 (550)
.+ +.-..+|-+.++.+|++|.+.....--..+.|-++.
T Consensus 249 ~G~~~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~ 287 (358)
T PF01566_consen 249 LGSPWARYLFAIGLFAAGFSSSITATLAGAYVLADFLGW 287 (358)
T ss_pred cCchHHHHhHHHHHHHHHHhhHHHhccccceehHhhhcC
Confidence 45 677888999999999999998877777777777753
No 53
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=64.34 E-value=2.2 Score=42.91 Aligned_cols=37 Identities=24% Similarity=0.350 Sum_probs=0.0
Q ss_pred hhheeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHH
Q psy15471 387 LVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFI 429 (550)
Q Consensus 387 v~wiYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v 429 (550)
..|+| .. +.++ +|...+....+|..|..-+++++|.+
T Consensus 121 ~vW~Y-m~-lLr~----~GAs~WtiLaFcLAF~LaivlLIIAv 157 (381)
T PF05297_consen 121 GVWFY-MW-LLRE----LGASFWTILAFCLAFLLAIVLLIIAV 157 (381)
T ss_dssp -------------------------------------------
T ss_pred HHHHH-HH-HHHH----hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35999 43 3332 23332222345777666655555544
No 54
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=60.85 E-value=2.4e+02 Score=30.34 Aligned_cols=84 Identities=7% Similarity=0.036 Sum_probs=41.2
Q ss_pred HHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-cccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchh
Q psy15471 143 VVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGL 221 (550)
Q Consensus 143 v~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~l 221 (550)
....-.+|+|..+|+..+....-.+.++++.+-++. ..+.. .............+...+..|+..++|+. .|+-..
T Consensus 138 ~~~ln~~gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~af-~G~e~~ 214 (445)
T PRK11357 138 FMLLHLRSVEGGAAFQTLITIAKIIPFTIVIGLGIFWFKAEN--FAAPTTTAIGATGSFMALLAGISATSWSY-TGMASI 214 (445)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcc--ccCCCcccccccchHHHHHHHHHHHHHHH-hhHHHH
Confidence 445567899999988766654333222222222211 11110 00000000000111345677888889988 488777
Q ss_pred hhcccccc
Q psy15471 222 IMYSSYND 229 (550)
Q Consensus 222 i~~aSyn~ 229 (550)
..++.=.|
T Consensus 215 ~~~a~E~k 222 (445)
T PRK11357 215 CYMTGEIK 222 (445)
T ss_pred HhhHHHhc
Confidence 77776433
No 55
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=59.68 E-value=2e+02 Score=31.77 Aligned_cols=46 Identities=11% Similarity=0.104 Sum_probs=32.4
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHH-Hhhhc
Q psy15471 285 AYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSV-SDEFL 331 (550)
Q Consensus 285 ~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l-~D~f~ 331 (550)
++|+...+. .|+....++...++-+.++|.=+.+...-+.+ .|-++
T Consensus 313 ~~~~l~~~~-lp~~l~gl~~a~ilAA~mST~~s~l~a~ss~~~~Diy~ 359 (502)
T PRK15419 313 VFIELAQIL-FNPWIAGILLSAILAAVMSTLSCQLLVCSSAITEDLYK 359 (502)
T ss_pred HHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766543 35667788888888888888888877776665 45443
No 56
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=56.01 E-value=1.3e+02 Score=32.45 Aligned_cols=114 Identities=17% Similarity=0.171 Sum_probs=56.4
Q ss_pred HHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhh
Q psy15471 143 VVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLI 222 (550)
Q Consensus 143 v~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li 222 (550)
+....++|-+..-|...+++..-.+.++++. ... .|.- +.-...-.|..+. .+...|..+..=.+||.+ +.+.+.
T Consensus 139 ~~~l~~~~~~~~lk~ts~l~~~~v~~~~~l~-~~~-~~~~-~~~~l~~~~~~~~-~~~~~~~~~ipv~vfsF~-~h~~i~ 213 (415)
T COG0814 139 LAFLSWLGTLAVLKITSLLVFGKVIYLVLLV-VYL-IPHW-NPANLFALPSASQ-SFWKYLLLAIPVFVFSFG-FHGNIP 213 (415)
T ss_pred HHHHHHhchhHHHHHHHHHHHHHHHHHHHHH-HHH-hccc-CHHHHhcccccch-hhHHHHHHHhhHHHhhhh-CCccch
Confidence 3346777878777776555433222222222 221 2211 1111111222221 234566788888888885 478888
Q ss_pred hccccccCCCcc-ccceeehh-HHHHHHHHHHHHHHHHHHH
Q psy15471 223 MYSSYNDFSNNV-YRDALVVS-VMDTITSIMSGIVTFSILG 261 (550)
Q Consensus 223 ~~aSyn~~~~n~-~rda~~v~-~~n~~~silag~~ifs~lG 261 (550)
++..|.+.+..= .|.+..++ ......-++-++.+|+..|
T Consensus 214 si~~~~~~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~ 254 (415)
T COG0814 214 SLVNYMRKNSKKAVRKAILIGSLIALVLYILVGFFVFGCFG 254 (415)
T ss_pred HHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888887766552 44443333 2233333344444555443
No 57
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=55.52 E-value=55 Score=35.45 Aligned_cols=170 Identities=19% Similarity=0.190 Sum_probs=82.6
Q ss_pred HHHHHHHhccccccccchhhhhhhH---HHHH--HHHHhhhcccccccccc-eeeeecCccc--ccchHHH----HHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFP---YVIL--VTLLVTGLLQDGAISGV-LYFITPTWEK--LLDIQVW----HAAAG 208 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p---~v~l--~il~ir~ltL~ga~~Gl-~~~~~pd~~~--L~~~~vW----~~A~~ 208 (550)
+++.+.+..|+|+.+|+.-..+|+- |++. .++....=.+|++..-+ +.-|+|+=-. .. .... ..-..
T Consensus 148 ~l~~~vi~GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii~~n~~~ip~~~~~If~~AF~~~aa~GG~~-G~~i~~ai~~Gv~ 226 (416)
T PF01235_consen 148 ILVALVIFGGIKRIAKVSEKLVPFMAILYILGGLIIIIINIDQIPAAFSLIFSSAFTPKAAFGGFA-GSTIMMAIRQGVA 226 (416)
T ss_pred HHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHcCCccchhhHH-HHHHHHHHHHhhh
Confidence 4677889999999998876665543 2222 23333333344433322 2233443210 00 0111 22233
Q ss_pred HHHHHhhcccchhhhccccccCCCccccceee---hhHHHHH-HHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEee
Q psy15471 209 QMFFSLSVSMGGLIMYSSYNDFSNNVYRDALV---VSVMDTI-TSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFV 284 (550)
Q Consensus 209 Q~ffSl~ig~G~li~~aSyn~~~~n~~rda~~---v~~~n~~-~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi 284 (550)
-..||--.|.|.-..-+|-.+-+|. .|.+++ =.++|++ ++-+.|+++.. .|.--.+-..+|..|.
T Consensus 227 Rg~fSNEAG~Gsa~~a~a~a~~~hP-~~QGl~~~~~vFiDTiiVCt~TalvIl~--------tG~~~~~~~~~g~~l~-- 295 (416)
T PF01235_consen 227 RGLFSNEAGLGSAPIAHAAAETDHP-VRQGLVQMFEVFIDTIIVCTITALVILV--------TGVWSWGSGLEGAALT-- 295 (416)
T ss_pred hhhccCCCCCChhHHHHHHhcCCCc-HHHeeeeeehHhHHHHHHHHHHHHHhhc--------cCCCCCCCcchHHHHH--
Confidence 4578888899988887776665555 455543 3444443 23344443321 2220000011344442
Q ss_pred hhHHHHhc-CCCchHHHHHHHHHHHHHhhhcccccchhhHHHH
Q psy15471 285 AYPEALLR-LPFPQLWSILFFLMLFVLGLDSEFALLENVLTSV 326 (550)
Q Consensus 285 ~~P~a~~~-~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l 326 (550)
-++|++ +| .+-..+.-+.+++.+++|.++..-.--.++
T Consensus 296 --~~Af~~~~g--~~g~~~v~i~l~lFafTTilg~~~yge~~~ 334 (416)
T PF01235_consen 296 --QAAFSTVLG--SWGPYFVAIALFLFAFTTILGWYYYGEKCA 334 (416)
T ss_pred --HHHHHHhhh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 355554 33 222333455566667888887654333333
No 58
>PRK15035 cytochrome bd-II oxidase subunit 1; Provisional
Probab=54.32 E-value=13 Score=41.04 Aligned_cols=113 Identities=14% Similarity=0.098 Sum_probs=70.7
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhc-cccCCchhHHHHHHHHHHHhhcccccccccceehhhh
Q psy15471 290 LLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFL-VLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMD 368 (550)
Q Consensus 290 ~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~-~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D 368 (550)
++++-.+---++-|++.-+.+|++-.++.+|.+----.|+.- ++.|.-.++-.+...++...|+++-.|-|..|=+...
T Consensus 7 LaR~QFA~T~~fH~lFvpltiGL~~~lai~E~~~~rtg~~~y~~larFw~Klf~InFavGVvTGivmeFqFG~nWs~ys~ 86 (514)
T PRK15035 7 LSRWQFALTALYHFLFVPLTLGLIFLLAIMETIYVVTGKTIYRDMTRFWGKLFGINFALGVATGLTMEFQFGTNWSFYSN 86 (514)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhhcchhhhhhhcchHHHHH
Confidence 344333334556777888889999999999988765555331 1221111233334445567788888899988876665
Q ss_pred hhhhhHHHH------HHHHHHHhhhh-heeCccchhHHHHh
Q psy15471 369 VYGGGTAVL------FIAIFECVSLV-WVYGLKNLCWDLKF 402 (550)
Q Consensus 369 ~~~~~~~l~------~~~~~e~i~v~-wiYG~~rf~~di~~ 402 (550)
....-++.+ +.=++|..+++ |+||.||+.+-.+.
T Consensus 87 ~vGdvfG~pLa~E~l~AFFlEstFlGl~lFGw~rl~~~~H~ 127 (514)
T PRK15035 87 YVGDIFGAPLAMEALMAFFLESTFVGLFFFGWQRLNKYQHL 127 (514)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Confidence 554333332 23456777665 99999998877653
No 59
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=51.88 E-value=2e+02 Score=30.77 Aligned_cols=83 Identities=19% Similarity=0.231 Sum_probs=46.8
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
.+..+...+|+|..+|+.......-.+.++++.+-++...+... ... +.+....-........+...++++. .|++.
T Consensus 143 ~~~~~ln~~G~~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~f-~G~e~ 219 (466)
T COG0531 143 ALLTLLNLRGIKASAKINSIITILKIIILLIFIILGLFAFGFSN-GNL-FAPFNPGGGSFGGILAAILLAFFAF-TGFEA 219 (466)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-ccc-CCCcccccchHHHHHHHHHHHHHHh-hcHHH
Confidence 45567778999999988777766655555555544433322222 111 1111111112234566666667776 78888
Q ss_pred hhhccc
Q psy15471 221 LIMYSS 226 (550)
Q Consensus 221 li~~aS 226 (550)
...++.
T Consensus 220 ~~~~a~ 225 (466)
T COG0531 220 IATLAE 225 (466)
T ss_pred HHHHHH
Confidence 888875
No 60
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=50.26 E-value=3.4e+02 Score=28.86 Aligned_cols=37 Identities=19% Similarity=0.133 Sum_probs=22.9
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL 178 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt 178 (550)
+..+....|.|...|..++.++.-.+..+.+.+..+.
T Consensus 122 l~~~~~~~G~~~i~~~~~~~~~~~~i~~~~~~~~~~~ 158 (386)
T TIGR02358 122 LVTLWLLSGPLAFVWLNNWSVWLLLIATLWLLVVVFS 158 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3444456788877788777776666555554444433
No 61
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=49.60 E-value=1.3e+02 Score=32.58 Aligned_cols=50 Identities=18% Similarity=0.282 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhccccc
Q psy15471 132 LAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDG 181 (550)
Q Consensus 132 l~~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~g 181 (550)
+.+..++-..+++...+|--|-.-++-+++.|...++++++.++++.-|.
T Consensus 120 l~ifs~ifF~ia~~~sl~psklid~vGk~LTPilLv~l~il~i~~~~~p~ 169 (431)
T COG1114 120 LFIFSVIFFAIAYLFSLNPSKLIDRVGKFLTPILLVLLLILVIAAIIPPA 169 (431)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHhHHHHHHHHHHHHHHHhCCC
Confidence 44444555566666666655554455556778888888999999876664
No 62
>KOG1289|consensus
Probab=48.68 E-value=2.1e+02 Score=32.04 Aligned_cols=120 Identities=19% Similarity=0.247 Sum_probs=57.8
Q ss_pred CccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeeh-hHHHHhcCCCchHHHHHHHHHHHHH
Q psy15471 232 NNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVA-YPEALLRLPFPQLWSILFFLMLFVL 310 (550)
Q Consensus 232 ~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~-~P~a~~~~p~~~lws~lFF~~l~~~ 310 (550)
.|.-+++=.-.+....++.+.|..+-- + ++...+.|.+.+..+..|..++. |-+++.+- +.-....+-.+.+++.
T Consensus 279 ~nAsk~aPrgIi~s~~i~~i~gw~~~I--~-i~~~i~~D~~~v~ns~~g~p~~~i~~~~lg~k-~~v~~~~l~ii~~f~~ 354 (550)
T KOG1289|consen 279 KNASKAAPRGIISSIAIGFILGWIIII--G-IAYTIPDDLDAVLNSSLGQPIVQIYYQALGKK-GAVFLLSLIIIALFFM 354 (550)
T ss_pred cchhhhccHHHHHHHHHHHHHHHHHHH--H-HHHhccchHHHHhcCCCCChHHHHHHHhcCCC-ceEehhHHHHHHHHHh
Confidence 344445444444444556665543211 1 12223335555665555554433 22333222 2223444555566677
Q ss_pred hhhcccccchhhHHHHHhh-hcc---ccC--Cc----hhHHHHHHHHHHHhhccc
Q psy15471 311 GLDSEFALLENVLTSVSDE-FLV---LRN--HK----LPFCICTALVCYVIGLSC 355 (550)
Q Consensus 311 gl~S~i~~~e~ivt~l~D~-f~~---l~~--~r----~~~~~~v~~~~fl~gl~~ 355 (550)
|+++..+.--.+-+-=+|. .|. +++ ++ .-++.+.|++..++|+..
T Consensus 355 gi~s~~a~SR~v~afaRDg~LP~S~~~~~v~~~t~~P~nAv~l~~i~s~llgll~ 409 (550)
T KOG1289|consen 355 GISSLTASSRLVYAFARDGGLPFSKYLAKVNPQTKVPLNAVLLSCIISILLGLLI 409 (550)
T ss_pred hHHHHHHHHHHHhhhhccCCCCCcceeeecCCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 7777776655454444553 232 222 11 235666777777777653
No 63
>PRK15097 cytochrome d terminal oxidase subunit 1; Provisional
Probab=46.90 E-value=22 Score=39.30 Aligned_cols=111 Identities=14% Similarity=0.108 Sum_probs=69.6
Q ss_pred hcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhh-ccccCCch-hHHHHHHHHHHHhhcccccccccceehhhh
Q psy15471 291 LRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLRNHKL-PFCICTALVCYVIGLSCVTHGGNYVLTLMD 368 (550)
Q Consensus 291 ~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f-~~l~~~r~-~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D 368 (550)
+++..+---++-|++.-+.+|++..++.+|.+----.|+- .++. |++ ++-.+...++-+.|+++-.|-|..|=+...
T Consensus 8 sR~QFA~T~~fH~lFvpltiGL~~llai~E~~~~rtg~~~y~~la-rFW~Klf~InFavGVvTGivmeFqFG~nWs~ys~ 86 (522)
T PRK15097 8 SRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMT-KFWGKLFGINFALGVATGLTMEFQFGTNWSYYSH 86 (522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHhhcchheeecccccHHHHH
Confidence 4433333455677788888999999999998864433322 1122 122 223333445567888888899988877666
Q ss_pred hhhhhHHHH------HHHHHHHhhhh-heeCccchhHHHHh
Q psy15471 369 VYGGGTAVL------FIAIFECVSLV-WVYGLKNLCWDLKF 402 (550)
Q Consensus 369 ~~~~~~~l~------~~~~~e~i~v~-wiYG~~rf~~di~~ 402 (550)
....-++.+ +.=++|..+++ |+||.+|+.+-.+.
T Consensus 87 ~vGdifG~pLa~E~l~AFFlEstFlGl~~FGW~rl~~~~H~ 127 (522)
T PRK15097 87 YVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHM 127 (522)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHHH
Confidence 554333332 23456776665 99999998877663
No 64
>PRK09664 tryptophan permease TnaB; Provisional
Probab=46.89 E-value=88 Score=33.88 Aligned_cols=98 Identities=8% Similarity=-0.043 Sum_probs=50.2
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecC-cccc-cchHHHHHHHHHHHHHhhccc
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPT-WEKL-LDIQVWHAAAGQMFFSLSVSM 218 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd-~~~L-~~~~vW~~A~~Q~ffSl~ig~ 218 (550)
++....++.|.|...|+.++....-.+. +++++-.+ .|.... .++.... +++- ...+....|.-=.++|.|- .
T Consensus 135 ~~~~~~v~~gt~~vd~~nr~l~~~~ii~-f~~~~~~l-~~~i~~--~~L~~~~~~~~~~~~~~~i~~alPVl~~SFgf-h 209 (415)
T PRK09664 135 IFVASVLWISSLAASRITSLFLGLKIIS-FVIVFGSF-FFQVDY--SILRDATSTTAGTSYFPYIFMALPVCLASFGF-H 209 (415)
T ss_pred HHHHHHHHhchhHHHHHHHHHHHHHHHH-HHHHHHHH-hhcccH--HHHhcCccccccchHHHHHHHHHHHHHHhhhC-C
Confidence 3455667788888888776654322222 22222221 222211 1222222 2210 0012234566666777776 7
Q ss_pred chhhhccccccCCCccccceeehhH
Q psy15471 219 GGLIMYSSYNDFSNNVYRDALVVSV 243 (550)
Q Consensus 219 G~li~~aSyn~~~~n~~rda~~v~~ 243 (550)
+.+.++..|.+.+.+-.|+++++..
T Consensus 210 ~iIPsl~~y~~~d~~~~~kaIl~Gs 234 (415)
T PRK09664 210 GNIPSLIICYGKRKDKLIKSVVFGS 234 (415)
T ss_pred CcchHHHHHhCccHHHHHHHHHHHH
Confidence 8888898886655555666666554
No 65
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=46.07 E-value=2.9e+02 Score=30.32 Aligned_cols=47 Identities=9% Similarity=0.028 Sum_probs=33.6
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHH-Hhhhcc
Q psy15471 285 AYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSV-SDEFLV 332 (550)
Q Consensus 285 ~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l-~D~f~~ 332 (550)
++|....+. .|+....++...++-+.++|.-+.+-..-+.+ .|-+++
T Consensus 306 ~~~~~~~~~-~p~~l~gl~~a~ilaA~mST~~s~l~s~ss~~~~Diy~~ 353 (487)
T TIGR02121 306 IFIVLSQIL-FHPWIAGILLAAILAAIMSTISSQLLVSSSALTEDFYKA 353 (487)
T ss_pred hHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577766653 34566788888888888888888888777776 454433
No 66
>PRK11017 codB cytosine permease; Provisional
Probab=45.98 E-value=4e+02 Score=28.48 Aligned_cols=39 Identities=10% Similarity=-0.035 Sum_probs=20.5
Q ss_pred HHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhc
Q psy15471 139 SWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177 (550)
Q Consensus 139 ~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~l 177 (550)
.+++.......|.|...|..++.+++..+.++...+..+
T Consensus 127 ~~~l~~~~~~~G~~~i~~~~~~~~p~~~~~~~~~~~~~~ 165 (404)
T PRK11017 127 SGLLMTVTAYFGISALTILSRIAVPAIALLGGYSVWLAV 165 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555565557766666655555544444443
No 67
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=45.40 E-value=1.6e+02 Score=32.85 Aligned_cols=108 Identities=14% Similarity=0.129 Sum_probs=65.2
Q ss_pred chhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcc-cccchHHHHHHHHHHHHHhhcc-------cchhhhccccc
Q psy15471 157 VVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWE-KLLDIQVWHAAAGQMFFSLSVS-------MGGLIMYSSYN 228 (550)
Q Consensus 157 v~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~-~L~~~~vW~~A~~Q~ffSl~ig-------~G~li~~aSyn 228 (550)
..++.+.+.--+-..++..++..| +.||.+|... +=..++.-..|..+.+|--|+- .|.-++|..||
T Consensus 89 ~sW~aMlf~aG~G~gllfwgvaEP-----~~h~~~PP~g~e~~s~~A~~~A~~~~~fHWG~~aWaiY~~~~la~ay~~y~ 163 (504)
T PRK03356 89 ASWIFMMFASCTSAAVLFWGSIEI-----YYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFGYFFFV 163 (504)
T ss_pred hHHHHHHHHHhhhhhhhhhhhhhH-----HHHcCCCCCCCCCCcHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHh
Confidence 466666666666677788877766 4566566432 1124677788999999988872 37778899999
Q ss_pred cCCCc-cccceeehhHHH-----HHHHHHHHHHHHHHHHHHHhhcCC
Q psy15471 229 DFSNN-VYRDALVVSVMD-----TITSIMSGIVTFSILGAMAHDLNV 269 (550)
Q Consensus 229 ~~~~n-~~rda~~v~~~n-----~~~silag~~ifs~lG~~a~~~~~ 269 (550)
|++.. -.|+++.-.+.+ ..-.++=.+++|+.++=+|...|.
T Consensus 164 ~~~p~l~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGl 210 (504)
T PRK03356 164 RKMDVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGL 210 (504)
T ss_pred cCCCcccHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHh
Confidence 98875 344443222221 012223334455555555555544
No 68
>PRK10483 tryptophan permease; Provisional
Probab=44.85 E-value=73 Score=34.51 Aligned_cols=182 Identities=9% Similarity=0.055 Sum_probs=82.0
Q ss_pred HHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhccc
Q psy15471 139 SWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSM 218 (550)
Q Consensus 139 ~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~ 218 (550)
-+++....++.|.|..+|+.+.....-.+..++++ -+ .+|... ...++...+++-.+.+....|.-=.++|+|--
T Consensus 134 F~~~~~~iv~~gt~~vd~~n~~l~~~~i~~f~~~~-~~-l~~~i~--~~~L~~~~~~~~~~~~~~~~alPvl~~SFgfh- 208 (414)
T PRK10483 134 FALLVAFVVWLSTKAVSRMTAIVLGAKVITFFLTF-GS-LLGHVQ--PATLFNVAESNASYAPYLLMTLPFCLASFGYH- 208 (414)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHH-HH-HHhhcC--HHHHhccccccchhHHHHHHHHHHHHhhccCC-
Confidence 34566677888999988887766543322222221 11 122211 11122222332122222336666677776653
Q ss_pred chhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchH
Q psy15471 219 GGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQL 298 (550)
Q Consensus 219 G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~l 298 (550)
+.+.++-.|.+.+.+-.|.+++++.. +.-++--+-.++++|.+..+. ..+...+|..+ -.+-+++++...++.
T Consensus 209 ~iIPsl~~y~~~d~~kir~~I~iGs~--Iplv~yl~W~~~~lg~l~~~~---~~~~~~~~~ni--~~L~~~l~~~~~~~~ 281 (414)
T PRK10483 209 GNVPSLMKYYGKDPKTIVKCLVYGTL--MALALYTIWLLATMGNIPRPE---FIGIAEKGGNI--DVLVQALSGVLNSRS 281 (414)
T ss_pred CcchHHHHHhCcCHHHHHHHHHHHHH--HHHHHHHHHHHHHhcCCCHHH---HHHHHHcCCCh--HHHHHHHHHhcCChH
Confidence 66666666644333333333333322 222222233556665332110 11111123221 112244444433333
Q ss_pred HHHHHHHHHHHHhhhcccccchhhHHHHHhhhcc
Q psy15471 299 WSILFFLMLFVLGLDSEFALLENVLTSVSDEFLV 332 (550)
Q Consensus 299 ws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~ 332 (550)
.+.+.=+.-+++=.+|-++.-......+.|.++.
T Consensus 282 i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~ 315 (414)
T PRK10483 282 LDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF 315 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3332222222334566677777788888888753
No 69
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=44.66 E-value=4.6e+02 Score=28.72 Aligned_cols=61 Identities=11% Similarity=0.063 Sum_probs=31.8
Q ss_pred HHHHHHHHHHhhcccchhhhccccccCCC------c-cccceeehhHHHHH-HHHHHHHHHHHHHHHHHh
Q psy15471 204 HAAAGQMFFSLSVSMGGLIMYSSYNDFSN------N-VYRDALVVSVMDTI-TSIMSGIVTFSILGAMAH 265 (550)
Q Consensus 204 ~~A~~Q~ffSl~ig~G~li~~aSyn~~~~------n-~~rda~~v~~~n~~-~silag~~ifs~lG~~a~ 265 (550)
..|.-=.++|.|- .+.+-++..|.|++. | ..|.+..+.....+ .-++--+-+|+++|.+.+
T Consensus 212 ~~~iPv~v~SF~f-~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~ 280 (443)
T PRK13629 212 WLGISIMVFSFNF-SPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSP 280 (443)
T ss_pred HHHHHHHHHHHhc-cccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH
Confidence 3556666777655 577888888865552 2 23333332222222 222223456777776544
No 70
>COG1271 CydA Cytochrome bd-type quinol oxidase, subunit 1 [Energy production and conversion]
Probab=44.40 E-value=21 Score=38.97 Aligned_cols=111 Identities=19% Similarity=0.234 Sum_probs=67.7
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhcc-ccCCchh-HHHHHHHHHHHhhcccccccccceehhh
Q psy15471 290 LLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLV-LRNHKLP-FCICTALVCYVIGLSCVTHGGNYVLTLM 367 (550)
Q Consensus 290 ~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~-l~~~r~~-~~~~v~~~~fl~gl~~~t~~G~~~~~l~ 367 (550)
++++-.+---++-|.+.-+.+|++.+++.+|.+-.--.|+.=+ +. |++. +-.+...++-..|+++..|-|..|=+..
T Consensus 7 lsR~qFa~t~~fHilFv~lTiGl~~~lai~e~~~~~t~d~~y~~~t-kfw~kvf~InFa~GvvTGivm~fqfg~nW~~fs 85 (457)
T COG1271 7 LSRLQFALTALFHILFVPLTIGLAFMLAIMETLYVKTKDEIYKRMT-KFWGKVFAINFAVGVVTGIVMEFQFGTNWPGFS 85 (457)
T ss_pred HHHHHHHHHHHHHHHHHhHHhhHHHHHHHHHHHHHHcCcHHHHHHH-HHHHHHHHHHHHHhhhhhhhhhhhhhcccHHHH
Confidence 3444333333455566667789999999999988766665411 22 2222 2223334555678888888888776666
Q ss_pred hhhhhhHHH------HHHHHHHHhhhh-heeCccchhHHHH
Q psy15471 368 DVYGGGTAV------LFIAIFECVSLV-WVYGLKNLCWDLK 401 (550)
Q Consensus 368 D~~~~~~~l------~~~~~~e~i~v~-wiYG~~rf~~di~ 401 (550)
+....-+.. ++.=++|..+++ |+||.||+.+-.+
T Consensus 86 ~~vG~V~g~PLa~E~l~AFFlEa~FLGi~lfgwdrv~~~~H 126 (457)
T COG1271 86 EYVGDVFGAPLAIEALFAFFLEATFLGIFLFGWDRVSKKLH 126 (457)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHHHHhheeeeccccCchhH
Confidence 655433332 333455666654 9999999886554
No 71
>PRK11021 putative transporter; Provisional
Probab=43.44 E-value=2.3e+02 Score=30.14 Aligned_cols=90 Identities=18% Similarity=0.206 Sum_probs=48.2
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
++..+...+|+|..+|+..+...+-..++.++... +..+.-++-+ ++.+. .+...+..++..++|+. .|+-.
T Consensus 124 ~~~~~ln~~Gv~~~~~~~~~~~~~~~~i~~~~~~~-----~~~~~~~~~~-~~~~~-~~~~~~~~~~~~~~~af-~G~e~ 195 (410)
T PRK11021 124 ALLWLLNLRGASSSANLQTVIALLIVALVVAIWWA-----GDIKPADIPF-PAPGS-IEWSGLFAALGVMFWCF-VGIEA 195 (410)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH-----cCCchhcCCC-CCCCC-ccHHHHHHHHHHHHHHH-hcHHH
Confidence 34556778999999998776543222222221111 1111111111 11111 13355788888899988 68888
Q ss_pred hhhccccccC-CCccccce
Q psy15471 221 LIMYSSYNDF-SNNVYRDA 238 (550)
Q Consensus 221 li~~aSyn~~-~~n~~rda 238 (550)
...++.=.|. +.|+.|-.
T Consensus 196 ~~~~a~E~k~P~k~iPrAi 214 (410)
T PRK11021 196 FAHLASEFKNPERDFPRAL 214 (410)
T ss_pred HHhhHHhccCccccccHHH
Confidence 8888775553 34455443
No 72
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=42.88 E-value=4.5e+02 Score=28.16 Aligned_cols=27 Identities=19% Similarity=0.173 Sum_probs=19.8
Q ss_pred CchHHHHHHHHHHHHHhhhcccccchh
Q psy15471 295 FPQLWSILFFLMLFVLGLDSEFALLEN 321 (550)
Q Consensus 295 ~~~lws~lFF~~l~~~gl~S~i~~~e~ 321 (550)
.++.=..+|-+.|+-+|++|.++....
T Consensus 290 ~G~~a~~lF~igLlaAG~sS~it~~~a 316 (390)
T TIGR01197 290 FSPAAGYIFAVGLLAAGQSSGMVGTYS 316 (390)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 355555677777999999999887554
No 73
>KOG1286|consensus
Probab=40.63 E-value=5.8e+02 Score=28.79 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=44.3
Q ss_pred ccccccccchhhhhhhHHHHHHHHHhhhccccc--ccccceeeeecC-cccccchHHHHHHHHHHHHHhhcccchhhhcc
Q psy15471 149 KGIKTSGKVVYFAATFPYVILVTLLVTGLLQDG--AISGVLYFITPT-WEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYS 225 (550)
Q Consensus 149 kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~g--a~~Gl~~~~~pd-~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~a 225 (550)
-|+|....+.++.+.+-++++.+..+-|..-.. ...|-+|.-.|. +..- -.+.+..++..++|+.+ |+=..-+-+
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~~~~ig~~y~~~~g~F~p~-gf~Gv~s~~~~~~fsf~-G~e~va~~a 255 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADVKNWIGFRYWHDPGAFFPF-GFKGVLSGAATAFFSFI-GFELVATTA 255 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCcCCCcCccccCCCCCcCCC-CcceeeHHHHHHHHHHh-hHHHHHHHH
Confidence 677776667777766666666666655544332 233333322221 1111 14667888899999996 776666655
Q ss_pred c
Q psy15471 226 S 226 (550)
Q Consensus 226 S 226 (550)
+
T Consensus 256 ~ 256 (554)
T KOG1286|consen 256 E 256 (554)
T ss_pred H
Confidence 5
No 74
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=38.56 E-value=56 Score=35.52 Aligned_cols=101 Identities=21% Similarity=0.239 Sum_probs=51.4
Q ss_pred HHHHHHHhccccccccchhhhhhhH---HHH--HHHHHhhhcccccccccc-eeeeecCc--ccccc---hHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFP---YVI--LVTLLVTGLLQDGAISGV-LYFITPTW--EKLLD---IQVWHAAAGQ 209 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p---~v~--l~il~ir~ltL~ga~~Gl-~~~~~pd~--~~L~~---~~vW~~A~~Q 209 (550)
+++.+.+++|+|+.+|+.-..+|+- |++ +.+++..-=.+|++..-+ +.-|.|+- .-... .++-..-..-
T Consensus 192 ~l~~~VI~GGi~rIa~v~~~vVPfMA~~Yi~~~~~Ii~~n~~~iP~~i~~If~sAF~~~aa~GG~~G~~v~~aI~~Gv~R 271 (452)
T COG1115 192 LLVALVIFGGIKRIAKVSSKVVPFMAILYVLVALVIIVLNISQIPAVIALIFSSAFGPKAAAGGFAGYTVAQAIRNGVKR 271 (452)
T ss_pred HHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhHHHHHHHHHhcCCchhhhhhhhhHHHHHHHHHHHHH
Confidence 5688889999999998876665542 322 223333333445433322 11122221 00000 1122333344
Q ss_pred HHHHhhcccchhhhccccccCCCccccceeehh
Q psy15471 210 MFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVS 242 (550)
Q Consensus 210 ~ffSl~ig~G~li~~aSyn~~~~n~~rda~~v~ 242 (550)
..||-=.|+|.-..-++=.+-+|. .|+.++-.
T Consensus 272 GlfSNEAGmGsap~aaAaA~~~hP-v~QGlv~~ 303 (452)
T COG1115 272 GLFSNEAGMGSAPIAAAAAKTDHP-VKQGLVQM 303 (452)
T ss_pred HhhcccccCCcchhHHHhhcCCCc-HHHhHHHH
Confidence 567777788877766665555543 45554433
No 75
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=38.28 E-value=5.7e+02 Score=28.01 Aligned_cols=36 Identities=6% Similarity=-0.087 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHhhcccchhhhccccccC-CCccccc
Q psy15471 201 QVWHAAAGQMFFSLSVSMGGLIMYSSYNDF-SNNVYRD 237 (550)
Q Consensus 201 ~vW~~A~~Q~ffSl~ig~G~li~~aSyn~~-~~n~~rd 237 (550)
..+..++..++|+. .|+-.....+.=.|. +.|+.|-
T Consensus 211 ~~~~~~~~~~~~~f-~G~e~~~~~a~E~~~p~~~~p~a 247 (496)
T PRK15238 211 IAVLSFVVFAIFAY-GGIEAVGGLVDKTENPEKNFPKG 247 (496)
T ss_pred hHHHHHHHHHHHHH-HhHHHHHHHHHhccCCCccccHH
Confidence 45677778888888 477777777764443 3345553
No 76
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=37.84 E-value=5.4e+02 Score=27.57 Aligned_cols=93 Identities=13% Similarity=0.139 Sum_probs=47.8
Q ss_pred HHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcc---cccc--hHHHHHHHHHHHHHh
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWE---KLLD--IQVWHAAAGQMFFSL 214 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~---~L~~--~~vW~~A~~Q~ffSl 214 (550)
+++......+|+|..+|+..+....-.+.++++..- ..++... -++ +.++++ .... ...+..++..++|++
T Consensus 129 ~~~~~~ln~~g~~~~~~i~~~~~~~~~~~l~i~~~~--~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~af 204 (442)
T TIGR00908 129 YIVFIGINILGVGEAAKLEFVVTAVAIIALGVFIGA--MVPHFDS-ANL-FNGPQTGASSFLPGAYVGVFAAIPFAIWFF 204 (442)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH--HhccCCH-HHh-ccCCccCCCCCCCccHHHHHHHHHHHHHHH
Confidence 344556778899999998766544333222222211 1111110 011 111121 1111 235677888888888
Q ss_pred hcccchhhhccccccC-CCccccc
Q psy15471 215 SVSMGGLIMYSSYNDF-SNNVYRD 237 (550)
Q Consensus 215 ~ig~G~li~~aSyn~~-~~n~~rd 237 (550)
.|+.....++.-.|. +.|+.|-
T Consensus 205 -~G~e~~~~~aeE~k~P~r~ipra 227 (442)
T TIGR00908 205 -LAVEGVAMAAEETKNPKRDIPRG 227 (442)
T ss_pred -HHHHHHHHHHHHhcCcccccCHH
Confidence 588887777765443 3344543
No 77
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=37.29 E-value=3.5e+02 Score=29.18 Aligned_cols=175 Identities=13% Similarity=0.103 Sum_probs=76.4
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhcccch
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGG 220 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~ 220 (550)
++....++.|.|..+|+..+.+. |.++.++++...+ .|.... ..+.+-+|++ +....+.-=.++|+|- .+.
T Consensus 129 ~~~~~iv~~g~~~v~~~n~~L~~-~~ii~~~~~~~~l-~p~~~~--~~L~~~~~~~----~~~~~~iPvl~~SFgf-h~i 199 (403)
T PRK15132 129 LVAGGVVCVGTSSVDLFNRFLFS-AKIIFLVVMLALM-MPHIHK--VNLLTLPLQQ----GLALSAIPVIFTSFGF-HGS 199 (403)
T ss_pred HHHHHHHhccHHHHHHHHHHHHH-HHHHHHHHHHHHH-HHhcCH--HHHhcCCccc----cHHHHHHHHHHHHhhC-Ccc
Confidence 34445778899988888776643 3322222221111 121110 0111111111 1233455555555544 466
Q ss_pred hhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCCccccccCCCceEeehhHHHHhcCCCchHHH
Q psy15471 221 LIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWS 300 (550)
Q Consensus 221 li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~v~~v~~~G~~L~Fi~~P~a~~~~p~~~lws 300 (550)
+.++..|.+.+.+-.|.+++++..- .-++--+-+++++|....+. ..+..+++.++ -..=+.+++...++.-+
T Consensus 200 Ipsl~~y~~~~~~~~~k~i~~Gs~i--~li~yl~W~~~~lg~l~~~~---~~~~~~~~~~~--~~~l~~l~~~~~~~~~~ 272 (403)
T PRK15132 200 VPSIVSYMGGNIRKLRWVFIIGSAI--PLVAYIFWQLATLGSIDSTT---FMGLLANHAGL--NGLLQALREVVASPHVE 272 (403)
T ss_pred cHHHHHHhCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCCCHHH---HHHHHHccCch--HHHHHHHHHHccChHHH
Confidence 7777777655544455555444332 22222234566666432210 11111122211 01113344433333222
Q ss_pred HHHHHHHHHHhhhcccccchhhHHHHHhhhc
Q psy15471 301 ILFFLMLFVLGLDSEFALLENVLTSVSDEFL 331 (550)
Q Consensus 301 ~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~ 331 (550)
.+.-+--+++=.+|-++.-......+.|.+.
T Consensus 273 ~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~ 303 (403)
T PRK15132 273 LAVHLFADLALATSFLGVALGLFDYLADLFQ 303 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 2211111233356667777777888888774
No 78
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=35.90 E-value=5.8e+02 Score=27.42 Aligned_cols=94 Identities=15% Similarity=0.222 Sum_probs=48.2
Q ss_pred HHHHHHhccccccccchhhhhhhHHHHHHHHHhhhc-----ccccc-cccceeeee-cCcccccchHHHHHHHHHHHHHh
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL-----LQDGA-ISGVLYFIT-PTWEKLLDIQVWHAAAGQMFFSL 214 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~l-----tL~ga-~~Gl~~~~~-pd~~~L~~~~vW~~A~~Q~ffSl 214 (550)
+......+|+|..+|+......+-.+.++++.+-++ ..++. ..+...+.. ..|.. .....+..|+.+++|+.
T Consensus 136 ~~~~~n~~gv~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~a~~~~~~af 214 (452)
T TIGR01773 136 VLTLTNLYSVKSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGSEVSGFSNLTGKGGFFP-NGIGAVLLAILVTMFSF 214 (452)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCccccccCCCCcCc-ccHHHHHHHHHHHHHHh
Confidence 345566789999998876655443333322222211 01111 111122111 11110 01245889999999998
Q ss_pred hcccchhhhccccccCCC-ccccc
Q psy15471 215 SVSMGGLIMYSSYNDFSN-NVYRD 237 (550)
Q Consensus 215 ~ig~G~li~~aSyn~~~~-n~~rd 237 (550)
.|+-....++.-.|.-+ |+.|-
T Consensus 215 -~G~e~~~~~a~E~k~P~r~iPrA 237 (452)
T TIGR01773 215 -MGTEIVTIAAAESSNPIKSITRA 237 (452)
T ss_pred -ccHHHHhHHHHhhcChhhHHHHH
Confidence 68888877776554332 44443
No 79
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=30.62 E-value=7.1e+02 Score=26.83 Aligned_cols=94 Identities=13% Similarity=0.218 Sum_probs=49.0
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc-ccccc-----ccceeeeecCccccc--chHHHHHHHHHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL-QDGAI-----SGVLYFITPTWEKLL--DIQVWHAAAGQMFF 212 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt-L~ga~-----~Gl~~~~~pd~~~L~--~~~vW~~A~~Q~ff 212 (550)
++......+|+|..|++..+...+-.+.++++.+.++. ..|.. .+...++.+ .... ..+.+..|+..++|
T Consensus 115 ~~~~~lN~~gv~~~~~i~~~~~~~ki~~li~~ii~~~~~~~g~~~~~~~~~~~~~~~~--~~~~p~g~~~~~~a~~~~~f 192 (446)
T PRK10197 115 LALTGSNLLSVKNYGEFEFWLALCKVIAILAFIFLGAVAISGFYPYAEVSGISRLWDS--GGFMPNGFGAVLSAMLITMF 192 (446)
T ss_pred HHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCcchhcCCC--CCCCcccHHHHHHHHHHHHH
Confidence 34445667899999988776655443333333222221 12211 111111111 1111 12466788889999
Q ss_pred HhhcccchhhhccccccC-CCccccc
Q psy15471 213 SLSVSMGGLIMYSSYNDF-SNNVYRD 237 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~-~~n~~rd 237 (550)
+. .|+-....++.-.|. +.|+.|-
T Consensus 193 af-~G~e~~~~~a~E~knP~r~iPra 217 (446)
T PRK10197 193 SF-MGAEIVTIAAAESDTPEKHIVRA 217 (446)
T ss_pred HH-hCHHHHHHHHHHhcChhhhHHHH
Confidence 98 588887777765442 2344443
No 80
>PRK09950 putative transporter; Provisional
Probab=28.86 E-value=4.4e+02 Score=29.40 Aligned_cols=70 Identities=13% Similarity=0.139 Sum_probs=45.4
Q ss_pred chhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcc-cccchHHHHHHHHHHHHHhhcc-------cchhhhcccc-
Q psy15471 157 VVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWE-KLLDIQVWHAAAGQMFFSLSVS-------MGGLIMYSSY- 227 (550)
Q Consensus 157 v~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~-~L~~~~vW~~A~~Q~ffSl~ig-------~G~li~~aSy- 227 (550)
..++.+.+.--+-..++..+...| +.||.+|... +=..++.-..|..+.+|-.|+- .|.-++|..|
T Consensus 87 ~sW~aMlf~aG~G~gllfwgvaEP-----~~h~~~Pp~g~e~~s~~A~~~A~~~t~fHWG~~aWaiY~l~~l~iaY~~~~ 161 (506)
T PRK09950 87 LSWLFMFICAGLGSSTLYWGVMEW-----AYYYQTPGLNIAPRSPKALEYSVSYSFFHWGISAWATYALASLIMAYHFHV 161 (506)
T ss_pred hhHHHHHHHHhhhhHHHHHhhHhH-----HHHhcCCCCCCCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHh
Confidence 366666666666677888877666 5566666542 1134567778999999988872 3667778444
Q ss_pred ccCC
Q psy15471 228 NDFS 231 (550)
Q Consensus 228 n~~~ 231 (550)
+|.+
T Consensus 162 rk~~ 165 (506)
T PRK09950 162 RKNK 165 (506)
T ss_pred hcCC
Confidence 4443
No 81
>PF11143 DUF2919: Protein of unknown function (DUF2919); InterPro: IPR021318 This bacterial family of proteins has no known function. Some members are annotated as YfeZ however this cannot be confirmed.
Probab=27.66 E-value=3.9e+02 Score=24.62 Aligned_cols=73 Identities=12% Similarity=0.177 Sum_probs=34.4
Q ss_pred HHHhhcccccccccceehhhhhhhhhHHHHHHHHHHHhhhhheeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHH
Q psy15471 348 CYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATI 427 (550)
Q Consensus 348 ~fl~gl~~~t~~G~~~~~l~D~~~~~~~l~~~~~~e~i~v~wiYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i 427 (550)
.|+++... .|.|...++++=---..+-+-+..-+=++.+.|++|.++ +-+.+++-.|+..-|++++.+
T Consensus 31 vfv~a~~s-r~~g~~LL~lfYP~~~~f~lgL~~g~Pall~~~l~~~R~-----------~~~~~~~~lwr~~r~lLl~~~ 98 (149)
T PF11143_consen 31 VFVMAGAS-RQQGSDLLALFYPDHSDFYLGLAAGLPALLLMLLSGRRH-----------RSPRWLNRLWRAGRWLLLLSL 98 (149)
T ss_pred HHHhhccC-ccchhhHHHHHcCCchHHHHHHHHhHHHHHHHHHHccCC-----------CCchHHHHHHHHHHHHHHHHH
Confidence 34444433 566767777762111222222222223333347777653 122334446666666666655
Q ss_pred HHHHH
Q psy15471 428 FIYSI 432 (550)
Q Consensus 428 ~v~~~ 432 (550)
++--.
T Consensus 99 ~~~l~ 103 (149)
T PF11143_consen 99 LVDLV 103 (149)
T ss_pred HHHHH
Confidence 54433
No 82
>PHA03239 envelope glycoprotein M; Provisional
Probab=27.48 E-value=1.7e+02 Score=31.66 Aligned_cols=40 Identities=20% Similarity=0.258 Sum_probs=25.9
Q ss_pred cCchhhHhHhHHHHhhhhhHHHHHHHHHHH------HhCCCcHHHHH
Q psy15471 444 DYPDWADGVGWCLACLSMCQIPFWALVVVL------RAKGSSLKQKF 484 (550)
Q Consensus 444 ~yP~w~~~iGw~l~~~~ll~Ip~~ai~~~~------~~~g~~~~~r~ 484 (550)
.-|.+...+-+.+++.+++++ +.++.++. |.+++.|-.|.
T Consensus 326 ~a~~l~~~v~~~Laviail~l-~~~ivRlvRa~~yHr~~~t~fy~~v 371 (429)
T PHA03239 326 ASPKLIQGAAGILAAFAVISI-ALAILRATRAYKFHKAANSKFLGQV 371 (429)
T ss_pred ccchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhhHHHHHH
Confidence 356678888888888888876 44555554 45555454433
No 83
>PTZ00206 amino acid transporter; Provisional
Probab=27.12 E-value=8.5e+02 Score=26.59 Aligned_cols=21 Identities=19% Similarity=0.194 Sum_probs=13.2
Q ss_pred HHHHHHhccccccccchhhhh
Q psy15471 142 VVVLCLMKGIKTSGKVVYFAA 162 (550)
Q Consensus 142 iv~~~~~kGvk~~GKv~~~~~ 162 (550)
+.-+++.|-+++.+++..+..
T Consensus 193 ~lPLs~~r~i~~L~~~S~i~~ 213 (467)
T PTZ00206 193 MLPLVIPRHIDSLRYVSTIAV 213 (467)
T ss_pred hhhcccccchHHHHHHHHHHH
Confidence 445667788887666655443
No 84
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=26.86 E-value=5.4e+02 Score=27.95 Aligned_cols=46 Identities=15% Similarity=0.304 Sum_probs=33.3
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHH-Hhhhc
Q psy15471 285 AYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSV-SDEFL 331 (550)
Q Consensus 285 ~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l-~D~f~ 331 (550)
++|....+. .|+....++...++.+.++|.-+.+....+.+ .|-++
T Consensus 306 ~~p~~~~~~-lp~~~~gl~~a~llaA~mST~~s~l~~~ss~~~~Diy~ 352 (471)
T TIGR02119 306 VIPLLAIKV-LPPILAGIFLAAPMAAIMSTVNSLLLQSSSTIIKDLYL 352 (471)
T ss_pred hHHHHHHHH-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567765442 45777888888888888988888887777766 45443
No 85
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=25.97 E-value=3.5e+02 Score=29.67 Aligned_cols=46 Identities=15% Similarity=0.283 Sum_probs=31.7
Q ss_pred hhHHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHH-Hhhhc
Q psy15471 285 AYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSV-SDEFL 331 (550)
Q Consensus 285 ~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l-~D~f~ 331 (550)
++|....+. .|+..+.++...++-+.++|.=+.+....+.+ .|-++
T Consensus 307 ~~p~l~~~~-lp~~l~gl~~a~~~aA~mST~~s~l~~~ss~~~~Di~~ 353 (483)
T PRK09442 307 VIPTLMLKV-LPPFAAGIFLAAPMAAIMSTVDSQLLQSSSTIIKDLYL 353 (483)
T ss_pred hHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 577776553 45777888888888888877777776666655 55443
No 86
>PF01528 Herpes_glycop: Herpesvirus glycoprotein M; InterPro: IPR000785 The Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) protein belongs to a family of sequences that groups together Human herpesvirus 1 (HHV-1) UL10, EHV-1 52, Human herpesvirus 3 (HHV-3) 50, Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4) BBRF3, Human herpesvirus 1 (HHV-1) 39 and Human cytomegalovirus (HHV-5) UL100. Little is yet known about the properties of the protein. However, its amino acid sequence is highly hydrophobic, containing 8 putative membrane-spanning regions, and it is therefore believed to be either membrane-associated or transmembrane.; GO: 0016020 membrane
Probab=23.61 E-value=3.4e+02 Score=28.98 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=30.8
Q ss_pred HHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhHHHHHHHHHHHHh
Q psy15471 425 ATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRA 475 (550)
Q Consensus 425 ~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~Ip~~ai~~~~~~ 475 (550)
.+++.....+|+. .+..|.|...+-..+++.+++++ +.++.+.+|.
T Consensus 282 ~~~l~~p~~~Y~~----~f~~~~~~~~i~~~la~i~~i~l-~~~vvR~vR~ 327 (374)
T PF01528_consen 282 CGILGLPAIRYEN----RFVAANLHTGIAINLAVIAIICL-IMMVVRLVRA 327 (374)
T ss_pred HHHHHHHHHHHHH----HhccccHHHHHHHHHHHHHHHHH-HHHHHHHHHH
Confidence 3444455555532 13578999999999999998886 4556666653
No 87
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=22.85 E-value=3.8e+02 Score=29.16 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=20.7
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHH
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVI 168 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~ 168 (550)
++++..+..|+|+.+|+.-..+|+..++
T Consensus 175 ~l~~~vi~GGik~Ia~v~~~lvP~m~~~ 202 (425)
T TIGR00835 175 VLTALIIFGGLKRIAKISSVVVPFMALL 202 (425)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHH
Confidence 4566778899999999987776665433
No 88
>PF05545 FixQ: Cbb3-type cytochrome oxidase component FixQ; InterPro: IPR008621 This family consists of several Cbb3-type cytochrome oxidase components (FixQ/CcoQ). FixQ is found in nitrogen fixing bacteria. Since nitrogen fixation is an energy-consuming process, effective symbioses depend on operation of a respiratory chain with a high affinity for O2, closely coupled to ATP production. This requirement is fulfilled by a special three-subunit terminal oxidase (cytochrome terminal oxidase cbb3), which was first identified in Bradyrhizobium japonicum as the product of the fixNOQP operon [].
Probab=22.55 E-value=1.1e+02 Score=22.32 Aligned_cols=37 Identities=11% Similarity=0.260 Sum_probs=24.4
Q ss_pred hhhhhhhhHHHHHHHHHHHhhhhheeCccchhHHHHhh
Q psy15471 366 LMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFM 403 (550)
Q Consensus 366 l~D~~~~~~~l~~~~~~e~i~v~wiYG~~rf~~di~~m 403 (550)
.+..+..++.+++...+-+..+.|.|..+| .++.++.
T Consensus 5 ~~~~~~~~~~~v~~~~~F~gi~~w~~~~~~-k~~~e~a 41 (49)
T PF05545_consen 5 TLQGFARSIGTVLFFVFFIGIVIWAYRPRN-KKRFEEA 41 (49)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcccc-hhhHHHH
Confidence 344555566666666666777889997666 6666654
No 89
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=22.04 E-value=9.7e+02 Score=26.30 Aligned_cols=76 Identities=17% Similarity=0.242 Sum_probs=48.3
Q ss_pred hhhhhhhHHHHHHHHHhhhcccccccccceeeeecCccc--ccchHHHHHHHHHHHHHhhc-c------cchhhhccccc
Q psy15471 158 VYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEK--LLDIQVWHAAAGQMFFSLSV-S------MGGLIMYSSYN 228 (550)
Q Consensus 158 ~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~--L~~~~vW~~A~~Q~ffSl~i-g------~G~li~~aSyn 228 (550)
.++.+.+.--+-..++..++..| +.||.+|-... -..++.-..|..+.+|-.|+ + .|..++|-+|+
T Consensus 41 sW~aMlf~aG~G~gllfwgvaEP-----~~h~~~Pp~g~~~~s~~~A~~~A~~~~~fHWG~~aWaiY~l~ala~aY~~~r 115 (453)
T TIGR00842 41 SWLAMLFAAGMGIGLMFWGVAEP-----LTYYLTPPFGAGPTSTTQAQEQALAYTLFHWGIHAWAIYALVGLALAYFHVR 115 (453)
T ss_pred HHHHHHHHHhhhhhhhhhHhhhH-----HHHhCCCCCCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHhhee
Confidence 56666666666667777877766 55666665421 11235667788888988877 2 36667787777
Q ss_pred cCCCccccce
Q psy15471 229 DFSNNVYRDA 238 (550)
Q Consensus 229 ~~~~n~~rda 238 (550)
|.+.--.|++
T Consensus 116 k~~~~~iss~ 125 (453)
T TIGR00842 116 KGLPLRLSSA 125 (453)
T ss_pred cCCCCchhhh
Confidence 7764434443
No 90
>PF01352 KRAB: KRAB box; InterPro: IPR001909 The Krueppel-associated box (KRAB) is a domain of around 75 amino acids that is found in the N-terminal part of about one third of eukaryotic Krueppel-type C2H2 zinc finger proteins (ZFPs) []. It is enriched in charged amino acids and can be divided into subregions A and B, which are predicted to fold into two amphipathic alpha-helices. The KRAB A and B boxes can be separated by variable spacer segments and many KRAB proteins contain only the A box []. The functions currently known for members of the KRAB-containing protein family include transcriptional repression of RNA polymerase I, II, and III promoters, binding and splicing of RNA, and control of nucleolus function. The KRAB domain functions as a transcriptional repressor when tethered to the template DNA by a DNA-binding domain. A sequence of 45 amino acids in the KRAB A subdomain has been shown to be necessary and sufficient for transcriptional repression. The B box does not repress by itself but does potentiate the repression exerted by the KRAB A subdomain [, ]. Gene silencing requires the binding of the KRAB domain to the RING-B box-coiled coil (RBCC) domain of the KAP-1/TIF1-beta corepressor. As KAP-1 binds to the heterochromatin proteins HP1, it has been proposed that the KRAB-ZFP-bound target gene could be silenced following recruitment to heterochromatin [, ]. KRAB-ZFPs probably constitute the single largest class of transcription factors within the human genome []. Although the function of KRAB-ZFPs is largely unknown, they appear to play important roles during cell differentiation and development. The KRAB domain is generally encoded by two exons. The regions coded by the two exons are known as KRAB-A and KRAB-B.; GO: 0003676 nucleic acid binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1V65_A.
Probab=21.80 E-value=28 Score=24.66 Aligned_cols=25 Identities=24% Similarity=0.577 Sum_probs=17.7
Q ss_pred CCCCCCChHHHHHHHHHh-hccCccc
Q psy15471 517 EDWGPADPEIKKQWAEEK-KNFEKVP 541 (550)
Q Consensus 517 ~~~~~~~~~~~~~~~~~~-~~~~~~~ 541 (550)
|+|..-||.+|..|++.+ +|++++.
T Consensus 13 eEW~~L~~~Qk~ly~dvm~Eny~~l~ 38 (41)
T PF01352_consen 13 EEWELLDPAQKNLYRDVMLENYRNLV 38 (41)
T ss_dssp HHHHTS-HHHHHHHHHHHHHTTTS--
T ss_pred hhcccccceecccchhHHHHhhcccE
Confidence 468888999999999875 4887763
No 91
>PRK10588 hypothetical protein; Provisional
Probab=21.18 E-value=1.9e+02 Score=24.68 Aligned_cols=40 Identities=20% Similarity=0.383 Sum_probs=26.0
Q ss_pred HHHHhhhhheeCccchhHHHHhhcCCCCcc-ccceeehhhhHHHHHHHHHHHHhh
Q psy15471 381 IFECVSLVWVYGLKNLCWDLKFMLKFQPGV-YWRFTWVFCAPVILATIFIYSIIA 434 (550)
Q Consensus 381 ~~e~i~v~wiYG~~rf~~di~~m~g~~~~~-~w~~~w~~v~P~~l~~i~v~~~i~ 434 (550)
++=.+..++++| .|++|.. +|+.. .+|.+...++++....
T Consensus 54 liwavc~g~IhG-----------VGF~Pr~~~Wq~l---FsP~~a~~iL~~g~~~ 94 (97)
T PRK10588 54 LMWAVCAGVIHG-----------VGFRPQKVLWQGI---FCPLPADIVLIVGLIF 94 (97)
T ss_pred HHHHHHHHHhhh-----------cccchhHHHHHHH---HhhHHHHHHHHHHHHH
Confidence 334455678888 4777763 45543 4899888888776643
No 92
>PRK14221 camphor resistance protein CrcB; Provisional
Probab=21.12 E-value=52 Score=29.29 Aligned_cols=52 Identities=19% Similarity=0.246 Sum_probs=38.3
Q ss_pred HHHHhhcccchhhhccccccCCCccccce-eehhHHHHHHHHHHHHHHHHHHHH
Q psy15471 210 MFFSLSVSMGGLIMYSSYNDFSNNVYRDA-LVVSVMDTITSIMSGIVTFSILGA 262 (550)
Q Consensus 210 ~ffSl~ig~G~li~~aSyn~~~~n~~rda-~~v~~~n~~~silag~~ifs~lG~ 262 (550)
.+.+.|. .|++.||||+.....+..++. ...+..+...|++.|+...-..|.
T Consensus 69 ~~l~tGf-~GgfTTFSTf~~E~~~l~~~~~~~~a~~y~~~s~~~gl~~~~~~~~ 121 (124)
T PRK14221 69 LALGTGF-CGGLTTFSSLMLDTVKLLDTGRYLSLILYLLLSIGGGLLLAYYLGR 121 (124)
T ss_pred HHHHHHH-hchhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3555555 599999999998877776654 456888999999998865544443
No 93
>PRK14230 camphor resistance protein CrcB; Provisional
Probab=21.05 E-value=49 Score=29.27 Aligned_cols=52 Identities=10% Similarity=0.224 Sum_probs=38.0
Q ss_pred HHHHHhhcccchhhhccccccCCCcccccee-ehhHHHHHHHHHHHHHHHHHHHH
Q psy15471 209 QMFFSLSVSMGGLIMYSSYNDFSNNVYRDAL-VVSVMDTITSIMSGIVTFSILGA 262 (550)
Q Consensus 209 Q~ffSl~ig~G~li~~aSyn~~~~n~~rda~-~v~~~n~~~silag~~ifs~lG~ 262 (550)
+.+.+.|. .|++.||||+...--+..++.- ..+..+...|++.|+ +...+|+
T Consensus 60 ~~~l~tGf-lGgfTTFSTf~~e~~~l~~~~~~~~a~~y~~~s~~~gl-~a~~lG~ 112 (119)
T PRK14230 60 KLLLITGF-LGSLTTLSGFSLETVTLLQSNRPASALANIFLHTAGSL-LLTWLGL 112 (119)
T ss_pred HHHHHHHH-hchHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555555 5999999999988777777554 467778888988887 3456665
No 94
>PRK14225 camphor resistance protein CrcB; Provisional
Probab=20.69 E-value=50 Score=29.95 Aligned_cols=53 Identities=15% Similarity=0.168 Sum_probs=38.3
Q ss_pred HHHHHhhcccchhhhccccccCCCccccce-eehhHHHHHHHHHHHHHHHHHHHHH
Q psy15471 209 QMFFSLSVSMGGLIMYSSYNDFSNNVYRDA-LVVSVMDTITSIMSGIVTFSILGAM 263 (550)
Q Consensus 209 Q~ffSl~ig~G~li~~aSyn~~~~n~~rda-~~v~~~n~~~silag~~ifs~lG~~ 263 (550)
+.+...|. .|++.|||++...-.+..++. ...+..+.+.|++.|+. ...+|+.
T Consensus 77 ~~~l~tGf-lGgfTTFSTfs~E~~~L~~~~~~~~a~~y~~~s~~~gl~-a~~lG~~ 130 (137)
T PRK14225 77 RQFVMGGL-CGGLTTFSSMSLDTFLLVLHGNAAFALAYLCGLVFLSLS-AAMLGLI 130 (137)
T ss_pred HHHHHHHH-hchhccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence 44555565 599999999998777776544 45677888899988873 4566653
No 95
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=20.11 E-value=1.2e+03 Score=25.81 Aligned_cols=106 Identities=20% Similarity=0.191 Sum_probs=58.5
Q ss_pred hhhhhhhHHHHHHHHHhhhcccccccccceeeeecCccc-ccchHHHHHHHHHHHHHhhc-------ccchhhhcccccc
Q psy15471 158 VYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEK-LLDIQVWHAAAGQMFFSLSV-------SMGGLIMYSSYND 229 (550)
Q Consensus 158 ~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~-L~~~~vW~~A~~Q~ffSl~i-------g~G~li~~aSyn~ 229 (550)
.++.+.+.--+-..++..++..| +.|+.+|-... =.+++.-..|..+.+|-.|+ =.|..+.|..|||
T Consensus 79 sW~aMlf~aGig~GivfwgvaEP-----~~~~~~pP~~~~p~s~~A~~~A~~~~~fHWG~~~Wa~Y~~~~l~~ay~~y~k 153 (485)
T PF02028_consen 79 SWFAMLFCAGIGAGIVFWGVAEP-----LYHYQSPPFGIEPGSPEAAEWAMAYSFFHWGFHAWAIYALVGLAIAYFFYNK 153 (485)
T ss_dssp HHHHHHHHHCSSHHHHHHHHHHH-----HHHHHS-STT-TTT-HHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHhcchhhcchhHhh-----HHHhcCCCCCCCCCCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHheeeeec
Confidence 44444443333345666666555 55666665432 12345558899999998887 2377789999997
Q ss_pred CCCccccceeehhHHHH----HHHHHHHHHHHHHHHHHHhhcC
Q psy15471 230 FSNNVYRDALVVSVMDT----ITSIMSGIVTFSILGAMAHDLN 268 (550)
Q Consensus 230 ~~~n~~rda~~v~~~n~----~~silag~~ifs~lG~~a~~~~ 268 (550)
.+.--.++++.-.+.+- +-.++=.++++++++-++...|
T Consensus 154 ~~~~~~ss~l~pl~g~~~~g~~g~~ID~l~i~a~~~GvatslG 196 (485)
T PF02028_consen 154 GKPLRISSALYPLLGDRINGPLGKIIDILAIFATIFGVATSLG 196 (485)
T ss_dssp ---SSGGGGCHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCchhhhhhhhcCCcccCcchhhhHHHHHHHHHHHHHHHHH
Confidence 77666666654444431 2233334456666655554443
Done!