Query psy15471
Match_columns 550
No_of_seqs 246 out of 1729
Neff 7.4
Searched_HMMs 29240
Date Fri Aug 16 21:55:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15471.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15471hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 2.7E-96 9E-101 796.8 21.4 429 2-463 51-496 (519)
2 4djk_A Probable glutamate/gamm 95.9 0.16 5.5E-06 54.1 16.4 85 140-230 138-229 (511)
3 3l1l_A Arginine/agmatine antip 95.8 0.46 1.6E-05 49.5 19.3 84 141-230 134-219 (445)
4 2jln_A MHP1; hydantoin, transp 94.6 0.81 2.8E-05 49.1 16.9 45 134-178 144-188 (501)
5 3gia_A Uncharacterized protein 92.8 1.3 4.6E-05 45.9 14.3 85 139-230 132-216 (444)
6 4ain_A Glycine betaine transpo 69.7 22 0.00076 38.1 10.6 161 213-388 336-499 (539)
7 3dh4_A Sodium/glucose cotransp 66.6 52 0.0018 35.1 13.0 45 284-330 308-352 (530)
8 2wsw_A BCCT family betaine/car 56.2 19 0.00066 38.4 7.0 94 212-315 330-428 (509)
9 2wsw_A BCCT family betaine/car 27.0 5.8E+02 0.02 26.9 13.0 80 159-243 96-184 (509)
10 4ain_A Glycine betaine transpo 17.0 71 0.0024 34.2 3.1 76 158-240 100-182 (539)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=2.7e-96 Score=796.78 Aligned_cols=429 Identities=22% Similarity=0.340 Sum_probs=400.3
Q ss_pred EEEehhHHHHHHHHHHH----hcCCCccccc-ccccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCC--
Q psy15471 2 LVLAGKPMYFLELAVGQ----FGGVGPLGLW-NCCPI--AKGVGVAMVTVSLIVCIYYNVIMSYTLYYMFSSLQFDVP-- 72 (550)
Q Consensus 2 l~~~GiPl~~lE~~lGQ----~~~~g~i~~~-~~~P~--~kGiG~~~~~~~~~i~~YY~vi~aw~l~Y~~~sf~~~lp-- 72 (550)
++++|+|++++|+++|| ++|+|++++| |++|. +||+|++++++++++++||++++||+++|+++|+++++|
T Consensus 51 l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~ 130 (519)
T 2a65_A 51 FLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEP 130 (519)
T ss_dssp HHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHHHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHHhcccchhccCCCHHHHHHHhcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence 56789999999999999 8888999999 57766 999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCcccccccccccccccccCchhhhhhhhhhhhhcccccCCCCCccchhHHHHHHHHHHHHHHHHHHhccc-
Q psy15471 73 WSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGI- 151 (550)
Q Consensus 73 W~~C~~~wnt~~~C~~~~~n~~~~~~~s~~~~~~~~~ff~~~vL~~s~~~~~~g~~~w~l~~~l~~~w~iv~~~~~kGv- 151 (550)
|++|++ ++| ..+| ++|||+ ++++.+++++|.|.++|++++|++++|++++++++||+
T Consensus 131 w~~~~~-----~~~-----------~~~~-----~~~~f~-~~l~~~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~ 188 (519)
T 2a65_A 131 PPNATD-----PDS-----------ILRP-----FKEFLY-SYIGVPKGDEPILKPSLFAYIVFLITMFINVSILIRGIS 188 (519)
T ss_dssp CC--CC-----HHH-----------HHHH-----HHHHHH-HHHTCCSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTT
T ss_pred ccccCC-----ccc-----------ccCc-----HHHHHH-HHHCCCCCcccccCccHHHHHHHHHHHHHHHHHHHHhhh
Confidence 664321 111 1235 677886 46888889999999999999999999999999999999
Q ss_pred cccccchhhhhhhHHHHHHHHHhhhccccc----ccccceeeeecCcccccchHHHHHHHHHHHHHhhcccchhhhcccc
Q psy15471 152 KTSGKVVYFAATFPYVILVTLLVTGLLQDG----AISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSY 227 (550)
Q Consensus 152 k~~GKv~~~~~~~p~v~l~il~ir~ltL~g----a~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~G~li~~aSy 227 (550)
|..||++|+++|+|++++++|++|++|||| |.+|++||++|||+||.|+++|.+|++|+|||||+|+|++++||||
T Consensus 189 kgiek~~~~~mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L~~~~vw~~A~gQ~FFSLslG~G~~ity~SY 268 (519)
T 2a65_A 189 KGIERFAKIAMPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASY 268 (519)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTSTTCHHHHHHHHHHHHHHHTTTSSHHHHHHTT
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHhCCHHHHHHHHHHHHHHhHHHHhHHhhhhcc
Confidence 779999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhhcCCC-ccccccCC-CceEeehhHHHHhcCCCchHHHHHHHH
Q psy15471 228 NDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVP-INQVVKEG-PGLAFVAYPEALLRLPFPQLWSILFFL 305 (550)
Q Consensus 228 n~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~~~~~-v~~v~~~G-~~L~Fi~~P~a~~~~p~~~lws~lFF~ 305 (550)
||+|||+.|||+++++.|+++|++||++||+.+||+| +|+| ++|++++| |||+|++||+++++||++++|+++||+
T Consensus 269 ~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~~lFF~ 346 (519)
T 2a65_A 269 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLGFLWFF 346 (519)
T ss_dssp SCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHHHHHHH
T ss_pred cCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchHHHHHH
Confidence 9999999999999999999999999999999999998 5777 77788899 999999999999999999999999999
Q ss_pred HHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhccccccc-ccceehhhhhhhhhHHHHHHHHHHH
Q psy15471 306 MLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHG-GNYVLTLMDVYGGGTAVLFIAIFEC 384 (550)
Q Consensus 306 ~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~-G~~~~~l~D~~~~~~~l~~~~~~e~ 384 (550)
|++++|++|+++++|+++++++|+++. +|++++..+|++++++|+|++|++ | +|++|++++++.+++++++|+
T Consensus 347 ~l~~agltS~i~~~E~~vt~l~D~~~~---~R~~~~~~v~~~~fllgl~~~~~~~g---~~~~D~~~~~~~l~~~~l~~~ 420 (519)
T 2a65_A 347 LLFFAGLTSSIAIMQPMIAFLEDELKL---SRKHAVLWTAAIVFFSAHLVMFLNKS---LDEMDFWAGTIGVVFFGLTEL 420 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHHHHHHHHBTTH---HHHHHHHTTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHhHHHHHHhhCC---cHHHHHHHHHHHHHHHHHHHHcCCCC---cchHHHHHhHHHHHHHHHHHH
Confidence 999999999999999999999999963 577788999999999999999998 8 999999999999999999999
Q ss_pred hhhhheeCccchhHHHHhhcCCCCccccceeehhhhHHHHHHHHHHHHhhcccccCCCccCchhhHhHhHHHHhhhhhH
Q psy15471 385 VSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQ 463 (550)
Q Consensus 385 i~v~wiYG~~rf~~di~~m~g~~~~~~w~~~w~~v~P~~l~~i~v~~~i~~~p~~y~~~~yP~w~~~iGw~l~~~~ll~ 463 (550)
++++|+||.+|+++|+++|.|++++.+|++||||++|++++++++++++++.|.+|++|+||.|. ||++++++++.
T Consensus 421 i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i~ 496 (519)
T 2a65_A 421 IIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFLF 496 (519)
T ss_dssp HHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHHH
T ss_pred HhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999995 99999886544
No 2
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A
Probab=95.88 E-value=0.16 Score=54.08 Aligned_cols=85 Identities=15% Similarity=0.139 Sum_probs=43.1
Q ss_pred HHHHHHHHhccccccccchhhhhhh----HHHHHHHHHhhhcccccccccce---eeeecCcccccchHHHHHHHHHHHH
Q psy15471 140 WIVVVLCLMKGIKTSGKVVYFAATF----PYVILVTLLVTGLLQDGAISGVL---YFITPTWEKLLDIQVWHAAAGQMFF 212 (550)
Q Consensus 140 w~iv~~~~~kGvk~~GKv~~~~~~~----p~v~l~il~ir~ltL~ga~~Gl~---~~~~pd~~~L~~~~vW~~A~~Q~ff 212 (550)
.+++.+...+|+|..+|+..+...+ +.++++++.+..+. +|...+.. ..+.|+++. ...| .++..++|
T Consensus 138 ~~~~~~in~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~ 212 (511)
T 4djk_A 138 LWALALTQFGGTKYTARIAKVGFFAGILLPAFILIALAAIYLH-SGAPVAIEMDSKTFFPDFSK---VGTL-VVFVAFIL 212 (511)
T ss_dssp HHHHHHHHHTCSSSHHHHTHHHHHHTTHHHHHHHHHHHHHHTC-------------CCCCCTTS---TTTT-TTHHHHHH
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCCcccccCcccccCCCccc---chHH-HHHHHHHH
Confidence 3445667778999999987665332 23333333222111 22211111 112344432 2233 45677888
Q ss_pred HhhcccchhhhccccccC
Q psy15471 213 SLSVSMGGLIMYSSYNDF 230 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~ 230 (550)
++ .|+-....++.-.|.
T Consensus 213 a~-~G~e~~~~~a~E~k~ 229 (511)
T 4djk_A 213 SY-MGVEASATHVNEMSN 229 (511)
T ss_dssp HH-TTGGGGTGGGSSSSC
T ss_pred HH-hhHHHHHHHHHhccC
Confidence 88 688887777776654
No 3
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=95.82 E-value=0.46 Score=49.47 Aligned_cols=84 Identities=14% Similarity=0.167 Sum_probs=47.5
Q ss_pred HHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCccc--ccchHHHHHHHHHHHHHhhccc
Q psy15471 141 IVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEK--LLDIQVWHAAAGQMFFSLSVSM 218 (550)
Q Consensus 141 ~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~--L~~~~vW~~A~~Q~ffSl~ig~ 218 (550)
+++.....+|+|..+|+..+...+-.+.++++.+-++...+. +. +.++|+. ..+...+..|+..++|+. .|+
T Consensus 134 ~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~~i~~~~~~~~-~~----~~~~~~~~~~~~~~~~~~~~~~~~~af-~G~ 207 (445)
T 3l1l_A 134 WIFVLLNIVGPKMITRVQAVATVLALIPIVGIAVFGWFWFRG-ET----YMAAWNVSGLGTFGAIQSTLNVTLWSF-IGV 207 (445)
T ss_dssp HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTTSTTCCC-CC----CCCC-----------HHHHHHHHHHTT-TTT
T ss_pred HHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCh-hh----cccccCccCCccHHHHHHHHHHHHHHH-HhH
Confidence 445566778999999998776655544444444444322111 11 1222221 112345677888889988 788
Q ss_pred chhhhccccccC
Q psy15471 219 GGLIMYSSYNDF 230 (550)
Q Consensus 219 G~li~~aSyn~~ 230 (550)
-....++...|.
T Consensus 208 e~~~~~~~e~k~ 219 (445)
T 3l1l_A 208 ESASVAAGVVKN 219 (445)
T ss_dssp THHHHGGGGBSS
T ss_pred HHHHHHHHHhcC
Confidence 888888876654
No 4
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A
Probab=94.62 E-value=0.81 Score=49.07 Aligned_cols=45 Identities=16% Similarity=0.091 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcc
Q psy15471 134 ICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL 178 (550)
Q Consensus 134 ~~l~~~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~lt 178 (550)
++.++.|++.......|.|...|...+.+++.++.++++++..+.
T Consensus 144 v~~~i~~~l~~~~~~~G~~~i~~~~~~~~p~~~i~~i~~~~~~l~ 188 (501)
T 2jln_A 144 LWIVIFGAIQVVTTFYGITFIRWMNVFASPVLLAMGVYMVYLMLD 188 (501)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556777888888889999988888888877777777766666554
No 5
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=92.84 E-value=1.3 Score=45.90 Aligned_cols=85 Identities=18% Similarity=0.211 Sum_probs=45.3
Q ss_pred HHHHHHHHHhccccccccchhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhccc
Q psy15471 139 SWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSM 218 (550)
Q Consensus 139 ~w~iv~~~~~kGvk~~GKv~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~ig~ 218 (550)
..+++.....+|+|..+|+..+...+-.+.++++.+-++..... + .+.|++..- ....+..++..++|+.. |+
T Consensus 132 ~~~~~~~in~~g~~~~~~~~~~~~~~~i~~~~~~ii~~~~~~~~-~----~~~~~~~~~-g~~~~~~~~~~~~~a~~-G~ 204 (444)
T 3gia_A 132 IVAFFTALNFFGSKAVGRAEFFIVLVKLLILGLFIFAGLITIHP-S----YVIPDLAPS-AVSGMIFASAIFFLSYM-GF 204 (444)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCG-G----GTSCCCSHH-HHHHHHHHHHHGGGGGT-HH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCh-h----hcCCCCCCc-chHHHHHHHHHHHHHHH-hH
Confidence 33455667788999999998776655444444443333321111 1 133433210 11234556666667663 66
Q ss_pred chhhhccccccC
Q psy15471 219 GGLIMYSSYNDF 230 (550)
Q Consensus 219 G~li~~aSyn~~ 230 (550)
.....++...|.
T Consensus 205 e~~~~~~~e~k~ 216 (444)
T 3gia_A 205 GVITNASEHIEN 216 (444)
T ss_dssp HHHHTTGGGBSS
T ss_pred HHHHHHHHHccC
Confidence 666666665443
No 6
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=69.73 E-value=22 Score=38.12 Aligned_cols=161 Identities=19% Similarity=0.131 Sum_probs=74.3
Q ss_pred HhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cCCCccccccCCCceEeehhHHH
Q psy15471 213 SLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LNVPINQVVKEGPGLAFVAYPEA 289 (550)
Q Consensus 213 Sl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~~~v~~v~~~G~~L~Fi~~P~a 289 (550)
|.+.-.|..++==| |-...|+-++..+ +.--+.+++-|++.|-.|-+ .|.++ ...+++. .++=+.
T Consensus 336 swaPfvG~FIARIS----rGRTIREfv~gvl---~vPsl~~~~WfsvfGg~ai~~~~~g~~~--~~~~~~~---~alf~~ 403 (539)
T 4ain_A 336 SWSPFVGMFLARIS----RGRSIREFILGVL---LVPAGVSTVWFSIFGGTAIVFEQNGESI--WGDGAAE---EQLFGL 403 (539)
T ss_dssp HHHHHHHHHHHHTT----TTCBHHHHHHTTT---HHHHHHHHHHHHHHHHHHHHHHHTTCCC--CTTSCHH---HHHHHH
T ss_pred HHHHHHHHHhhhcc----CCcCHHHHHHHHH---HHHHHHHHHHHHHhCHHHHHHHHhccch--hhcCCHh---hHHHHH
Confidence 44555566666444 3334565443332 33333445556666655532 22222 1122332 245577
Q ss_pred HhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhhccccCCchhHHHHHHHHHHHhhcccccccccceehhhhh
Q psy15471 290 LLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDV 369 (550)
Q Consensus 290 ~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f~~l~~~r~~~~~~v~~~~fl~gl~~~t~~G~~~~~l~D~ 369 (550)
+.++|.+.+.++++-+++++.=++|.=+..- ++..+... ++.. +++.....-|++.-++++.+..-+|..-++.+..
T Consensus 404 l~~lP~~~i~~~l~iili~~FfvTSaDS~s~-vl~~~ss~-g~~~-p~~~~rifWgv~~g~va~~LL~~GG~~~L~aLQt 480 (539)
T 4ain_A 404 LHALPGGQIMGIIAMILLGTFFITSADSAST-VMGTMSQH-GQLE-ANKWVTAAWGVATAAIGLTLLLSGGDNALSNLQN 480 (539)
T ss_dssp HHTSTTHHHHHHHHHHHHHHHHHTTTHHHHH-HHHHHHTT-TCSS-CCHHHHHHHHHHHHHHHHHHTTC-----CHHHHH
T ss_pred HHHCchHHHHHHHHHHHHHHHHHHccchHHH-HHHHHHcC-CCCC-CCcchhhHHHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 8999999999888877666554444333222 22222211 1111 1222233334334344444444466444566666
Q ss_pred hhhhHHHHHHHHHHHhhhh
Q psy15471 370 YGGGTAVLFIAIFECVSLV 388 (550)
Q Consensus 370 ~~~~~~l~~~~~~e~i~v~ 388 (550)
...-..+++..++-...++
T Consensus 481 ~~ii~alPf~~v~llm~~s 499 (539)
T 4ain_A 481 VTIVAATPFLFVVIGLMFA 499 (539)
T ss_dssp HHHHHHHHHHHHHHTHHHH
T ss_pred hHHHHHhHHHHHHHHHHHH
Confidence 6554555554444444444
No 7
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=66.57 E-value=52 Score=35.10 Aligned_cols=45 Identities=22% Similarity=0.129 Sum_probs=34.2
Q ss_pred ehhHHHHhcCCCchHHHHHHHHHHHHHhhhcccccchhhHHHHHhhh
Q psy15471 284 VAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF 330 (550)
Q Consensus 284 i~~P~a~~~~p~~~lws~lFF~~l~~~gl~S~i~~~e~ivt~l~D~f 330 (550)
.++|.....+ |+....++...++-+.++|.-+.+....+.+.+.+
T Consensus 308 ~~~p~l~~~l--p~~l~Gl~~a~llAA~mST~ss~l~s~st~~~~Di 352 (530)
T 3dh4_A 308 KAYPWLTQFL--PVGVKGVVFAALAAAIVSSLASMLNSTATIFTMDI 352 (530)
T ss_dssp GHHHHHHTTC--CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHc--chhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhHH
Confidence 3688877654 46677888888888888888888888888765543
No 8
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=56.16 E-value=19 Score=38.36 Aligned_cols=94 Identities=18% Similarity=0.196 Sum_probs=50.9
Q ss_pred HHhhcccchhhhccccccCCCccccceeehhHHHHHHHHHHHHHHHHHHHHHHhh---cC-CCccccc-cCCCceEeehh
Q psy15471 212 FSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHD---LN-VPINQVV-KEGPGLAFVAY 286 (550)
Q Consensus 212 fSl~ig~G~li~~aSyn~~~~n~~rda~~v~~~n~~~silag~~ifs~lG~~a~~---~~-~~v~~v~-~~G~~L~Fi~~ 286 (550)
.|.+.-.|..++==| |-...|+-+.. ..+.--+.+++-|++.|..|-+ .| .++.+.. ++++. .++
T Consensus 330 isWaPfvG~FIARIS----rGRTIREfi~g---vl~vPs~~~~~WfsvfGg~ai~~~~~g~~~l~~~~~~~~~~---~al 399 (509)
T 2wsw_A 330 VIYAIQMSIFLARIS----KGRTVRELCLG---MVSGLTAGTWLIWTILGGNTLQLIDQNILNIPQLIDQYGVP---RAI 399 (509)
T ss_dssp HHTHHHHHHHHHHTT----TTCBHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHTTSCCHHHHHHHHCHH---HHH
T ss_pred HHHHHHHHHHhheec----CCcCHHHHHHH---HHHHHHHHHHHhHHHHhHHHHHHHHhCCccHHHHHhccChh---hHH
Confidence 455566666766444 23345554332 3344444455667777766532 22 2332222 22332 234
Q ss_pred HHHHhcCCCchHHHHHHHHHHHHHhhhcc
Q psy15471 287 PEALLRLPFPQLWSILFFLMLFVLGLDSE 315 (550)
Q Consensus 287 P~a~~~~p~~~lws~lFF~~l~~~gl~S~ 315 (550)
=+.+.++|.+.+.++++-+++++.=++|.
T Consensus 400 f~~l~~lP~~~i~~~l~iil~~~FfvTSa 428 (509)
T 2wsw_A 400 IETWAALPLSTATMWGFFILCFIATVTLI 428 (509)
T ss_dssp HHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHCChHHHHHHHHHHHHHHHHHHcc
Confidence 56788999999988887776665444443
No 9
>2wsw_A BCCT family betaine/carnitine/choline transporter; transport protein, SD methionine, membrane protein; HET: CM5 1PE; 2.29A {Proteus mirabilis} PDB: 2wsx_A* 3hfx_A*
Probab=26.99 E-value=5.8e+02 Score=26.93 Aligned_cols=80 Identities=13% Similarity=0.121 Sum_probs=47.4
Q ss_pred hhhhhhHHHHHHHHHhhhcccccccccceeeeecCcc-cccchHHHHHHHHHHHHHhhc-cc------chhhhccccccC
Q psy15471 159 YFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWE-KLLDIQVWHAAAGQMFFSLSV-SM------GGLIMYSSYNDF 230 (550)
Q Consensus 159 ~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~-~L~~~~vW~~A~~Q~ffSl~i-g~------G~li~~aSyn~~ 230 (550)
++.+.+.--+-+-++..++..| +.||.+|... +=.+.+.-..|..+.||-.|+ +| |..++|.+|||+
T Consensus 96 W~aMlF~aGmGiGl~fwgvaEP-----~~h~~~pP~~~~~~s~eAa~~Am~~tffHWG~~~WaiYal~~lalayf~y~r~ 170 (509)
T 2wsw_A 96 WIFMMFASCTSAAVLFWGSIEI-----YYYISSPPFGMEGYSAPAKEIGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRK 170 (509)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHH-----HHHHHSCSTTCCTTCHHHHHHHHHHHHHHTSHHHHHTTHHHHHHHHHHHHTSC
T ss_pred HHHHHHHHhhhhHHhhhhhhhh-----HHHccCCCCCCCCCcHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHcC
Confidence 3333333333345666766655 4455554332 223467778999999998887 22 556778899777
Q ss_pred CCcc-ccceeehhH
Q psy15471 231 SNNV-YRDALVVSV 243 (550)
Q Consensus 231 ~~n~-~rda~~v~~ 243 (550)
+.+. .|+++.-.+
T Consensus 171 ~~pl~iss~l~Pll 184 (509)
T 2wsw_A 171 MEVIRPSSTLVPLV 184 (509)
T ss_dssp CCCCSGGGGCHHHH
T ss_pred CCCcchHHHhHhhc
Confidence 5554 555553333
No 10
>4ain_A Glycine betaine transporter BETP; membrane protein, chemosensor and osmosensor, secondary TRAN sodium coupled transport; HET: FLC CM5; 3.10A {Corynebacterium glutamicum} PDB: 4doj_A* 2w8a_A 2wit_A 3p03_A
Probab=17.02 E-value=71 Score=34.24 Aligned_cols=76 Identities=16% Similarity=0.226 Sum_probs=46.3
Q ss_pred hhhhhhhHHHHHHHHHhhhcccccccccceeeeecCcccccchHHHHHHHHHHHHHhhc-cc------chhhhccccccC
Q psy15471 158 VYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSV-SM------GGLIMYSSYNDF 230 (550)
Q Consensus 158 ~~~~~~~p~v~l~il~ir~ltL~ga~~Gl~~~~~pd~~~L~~~~vW~~A~~Q~ffSl~i-g~------G~li~~aSyn~~ 230 (550)
.++.+.+.--+-+.++..++..| +.||.+|.... .++.-..|..|.||-.|+ +| |..++|.+|||.
T Consensus 100 sW~aMlF~AGmGiGl~FwgvaEP-----l~h~~~pP~~~--~~eAa~~Am~~t~fHWG~~~WAiYav~glalaY~~yrk~ 172 (539)
T 4ain_A 100 SWISMMFAAGMGIGLMFYGTTEP-----LTFYRNGVPGH--DEHNVGVAMSTTMFHWTLHPWAIYAIVGLAIAYSTFRVG 172 (539)
T ss_dssp HHHHHHHTTSCCTHHHHHHHHHH-----HHHHHTCCTTS--CSSCHHHHHHHHHHHHSHHHHHHHHHHHHHHHCCCCCTC
T ss_pred HHHHHHHHHhhcchheeehhhhh-----HHHhcCCCCCc--cHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhcCC
Confidence 44444443333345566665544 45555554321 235567899999998887 33 666889999886
Q ss_pred CCccccceee
Q psy15471 231 SNNVYRDALV 240 (550)
Q Consensus 231 ~~n~~rda~~ 240 (550)
+.-..|+++.
T Consensus 173 ~pl~iss~l~ 182 (539)
T 4ain_A 173 RKQLLSSAFV 182 (539)
T ss_dssp CCSCTTGGGH
T ss_pred CCCcHHHHhH
Confidence 6655666654
Done!