RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15471
(550 letters)
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 530 bits (1367), Expect = 0.0
Identities = 206/499 (41%), Positives = 315/499 (63%), Gaps = 12/499 (2%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLY 61
LVL G P++FLE+A+GQ+ G + W CP+ KG+G A + + IYY VI+++ L+
Sbjct: 47 LVLCGIPIFFLEVALGQYTSQGGITAWKICPLFKGIGYASAVIVFWLNIYYIVILAWALF 106
Query: 62 YMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHV-----KSARVVICQVESATRKVL 116
Y+F+S ++PW+ CD W C N ++S++ + E R+VL
Sbjct: 107 YLFNSFTSELPWTTCDNWWNT-ECCVETYSNNNLSNLTKNCSNNTNSTSPVEEFWERRVL 165
Query: 117 KLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176
+SDGIE++G ++ +LA+CL ++WI+ C+ KG+K++GKVVYF ATFPYV+L+ LL+ G
Sbjct: 166 GISDGIEDIGSIRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYVMLIILLIRG 225
Query: 177 LLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236
+ GA G+ +++ P KLLD QVW A Q+FFS + +G L SYN F+NN Y+
Sbjct: 226 VTLPGASDGIYFYLKPDLTKLLDPQVWIDAGTQIFFSYGIGLGSLTALGSYNKFNNNCYK 285
Query: 237 DALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFP 296
D++++ +++ TS +G FSILG MA + VPI++V + GPGLAF+AYP A+ LP P
Sbjct: 286 DSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLLPLP 345
Query: 297 QLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF---LVLRNHKLPFCICTALVCYVIGL 353
QLW++LFF+ML +LGLDS+F +E +T++ D + L LR + F LVC++IGL
Sbjct: 346 QLWAVLFFIMLLLLGLDSQFVGVEGFVTAIVDLYPNVLRLRYRREIFVAIVCLVCFLIGL 405
Query: 354 SCVTHGGNYVLTLMDVYG-GGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYW 412
VT GG YV L D Y G +L++A FEC+++ WVYG +++ M+ ++PG +W
Sbjct: 406 PMVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADRFYDNIEDMIGYRPGPWW 465
Query: 413 RFTWVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVV 471
++ W F P I IF++S++ + PL Y N Y YP WA+ +GW LA SM IP +A+ +
Sbjct: 466 KYCWKFLTPAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLALSSMLCIPGYAIYI 525
Query: 472 VLRAKGSSLKQKFLNAISP 490
+L+ G SLK++ +P
Sbjct: 526 LLKTPG-SLKERLRKLTTP 543
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 525 bits (1355), Expect = 0.0
Identities = 230/500 (46%), Positives = 332/500 (66%), Gaps = 5/500 (1%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
ML G P++F+EL++GQ+G +GPL +W CCPI KG+G M+ VS +VCIYYNVI+++TL
Sbjct: 46 MLAFCGIPLFFMELSLGQYGSLGPLTVWKCCPIFKGIGYGMLLVSGLVCIYYNVIIAWTL 105
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTCYVRGV-NVSMSHVKSARVVICQVESATRKVLKL- 118
+Y+F+S +PW C W S R N+ V R V E R+VL +
Sbjct: 106 FYLFASFTSVLPWEHCGNWWNTESCLEHRVKDNMGALPVNLTRTVSPSEEYWNRRVLGIQ 165
Query: 119 -SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177
S GI + G V+ +LA+CL ++W++V CL KG+K+SGKVVYF ATFPY+IL+ LLV G+
Sbjct: 166 GSSGIGDPGEVRWELALCLLLAWVIVFFCLFKGVKSSGKVVYFTATFPYIILIVLLVRGV 225
Query: 178 LQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237
+GA+ G+ +++TP + +L QVW+ AA Q+F+SL + GGL+ +SYN F+NN+YRD
Sbjct: 226 TLEGALKGIQFYLTPDFHRLASSQVWYDAASQIFYSLGIGFGGLLTMASYNKFNNNIYRD 285
Query: 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQ 297
L++++ + ITS+ +G FS+LG MAH+L VP+ V GPGLAFVAYPEAL LP
Sbjct: 286 TLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAFVAYPEALTLLPVSP 345
Query: 298 LWSILFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLRNHKLPFCICTALVCYVIGLSCV 356
WSILFF ML LGLDS+FA+LE ++T+V+DEF +LR +K F + Y++GL V
Sbjct: 346 FWSILFFFMLLTLGLDSQFAMLETIVTAVTDEFPYLLRKYKTWFLGLICVGMYLLGLLLV 405
Query: 357 THGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTW 416
T GG Y LTLMD Y ++ +A+F C+++ WVYG++ C D+K M+ F+P +Y++ W
Sbjct: 406 TDGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQRFCRDIKMMIGFEPNLYFKACW 465
Query: 417 VFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAK 476
+F +P +L I +YSI+ ++P Y +Y YP WA+ +G + LS IP A+V +LR +
Sbjct: 466 MFISPALLLFILVYSIVKYQPSEYGSYRYPPWAELLGILMGLLSCLMIPIGAIVAILREE 525
Query: 477 GSSLKQKFLNAISPTEDWGP 496
G SL ++ A P DWGP
Sbjct: 526 G-SLWERLKQACRPAMDWGP 544
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 510 bits (1315), Expect = e-177
Identities = 226/477 (47%), Positives = 320/477 (67%), Gaps = 18/477 (3%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
L+ AG P++FLELA+GQ+ G +G+W CP+ KG+G A + + + IYYNVI+++
Sbjct: 46 FLITAGIPLFFLELALGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIYYNVIIAWA 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLS 119
LYY+FSS ++PW+ C+ W + K++ V E RKVLKLS
Sbjct: 106 LYYLFSSFTTELPWASCNNSW------------NTPRCEKTSPVE----EFWERKVLKLS 149
Query: 120 DGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ 179
DGIE+LG ++ L +CL V+W+VV C+ KG+K+SGKVVYF ATFPYV+L+ LLV G+
Sbjct: 150 DGIEDLGGLRWPLTLCLLVAWVVVYFCIWKGVKSSGKVVYFTATFPYVVLLVLLVRGVTL 209
Query: 180 DGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDAL 239
GA G+ +++TP W KLLD QVW AA Q+FFSL + GGLI ++SYN F NN YRDAL
Sbjct: 210 PGAADGIDFYLTPDWSKLLDPQVWIDAATQIFFSLGIGFGGLIAFASYNKFHNNCYRDAL 269
Query: 240 VVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLW 299
+VS +++ TS ++G V FS+LG MA + VPI++V + GPGLAF+AYPEA+ LP W
Sbjct: 270 IVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPEAVTMLPLSPFW 329
Query: 300 SILFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLRNHKLPFCICTALVCYVIGLSCVTH 358
S+LFFLML LGLDS+F +E ++T++ DEF ++LR + F + ++ ++IGL VT
Sbjct: 330 SVLFFLMLITLGLDSQFGGVEGIITALVDEFPILLRKRRELFTLIVCVISFLIGLILVTE 389
Query: 359 GGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVF 418
GG YV TL D Y +LF+ FEC+++ WVYGL D+K ML F+PG++WR W F
Sbjct: 390 GGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDRFYDDIKEMLGFRPGLFWRLCWKF 449
Query: 419 CAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRA 475
+P+IL +FI+SI+ +KPL Y NY YP+WA+ +GW +A SM IP +++ +L
Sbjct: 450 VSPLILLFLFIFSIVQYKPLTYNNYVYPNWANALGWLMALSSMLCIPLYSIYKLLST 506
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 501 bits (1291), Expect = e-173
Identities = 217/495 (43%), Positives = 311/495 (62%), Gaps = 5/495 (1%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
ML+ G P++++ELA+GQ+ G + +W CPI KGVG A+ ++ V YYN I+++
Sbjct: 46 MLIFGGLPLFYMELALGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYYNTIIAWA 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKL- 118
LYY+FSS ++PW+ C+ W + V N S S + + E RKVL+L
Sbjct: 106 LYYLFSSFTSELPWTSCNNPWNTPNCTDVSNRNNSSSSNGTWTLHSPAEEFFERKVLELQ 165
Query: 119 -SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177
S+GI++LG K LA+CL +I+V L KG+K+SGKVV+ AT PYV+L LL+ GL
Sbjct: 166 KSEGIDDLGGPKWQLALCLFAVFIIVYFSLWKGVKSSGKVVWVTATMPYVVLSILLIRGL 225
Query: 178 LQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237
GA G+ Y++TP W KL D +VW AA Q+FFSL G L+ SSYN F NN YRD
Sbjct: 226 TLPGASDGIKYYLTPNWSKLKDPKVWIDAATQIFFSLGPGFGVLLALSSYNKFHNNCYRD 285
Query: 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQ 297
AL+ S ++ +TS SG V FS+LG MAH NV I V EGPGL F+ YPEA+ LP
Sbjct: 286 ALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFIVYPEAIATLPGST 345
Query: 298 LWSILFFLMLFVLGLDSEFALLENVLTSVSDEFL-VLRNHKLPFCICTALVCYVIGLSCV 356
W+I+FFLML LGLDS F LE V+T + DEF VL + F + ++C+++ L V
Sbjct: 346 FWAIIFFLMLITLGLDSTFGGLEAVITGLCDEFPPVLGKRRELFVLGVVIICFLLALPTV 405
Query: 357 THGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTW 416
T+GG YV+TL+D Y GT++LF+ E V++ W YG+ D++ ML F+PG+YWR W
Sbjct: 406 TYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSDDIEEMLGFRPGLYWRVCW 465
Query: 417 VFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAK 476
F +P+ L I I+S+++++PL Y++Y YP W+ VGWC+ C S+ IP +A+ ++
Sbjct: 466 KFISPIFLLFIVIFSLVSYEPLQYQDYVYPYWSTVVGWCITCSSIVCIPIYAIYKLIITP 525
Query: 477 GSSLKQKFLNAISPT 491
G + K++ + I+P
Sbjct: 526 G-TFKERIVYLITPE 539
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 452 bits (1164), Expect = e-153
Identities = 216/527 (40%), Positives = 318/527 (60%), Gaps = 31/527 (5%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
ML LAG P++FLE ++GQF +GP+ +W P+ +GVG+ MV VS V IYYNVI++Y+L
Sbjct: 46 MLALAGLPLFFLECSLGQFASLGPISVWRAVPLLQGVGITMVLVSTFVSIYYNVIIAYSL 105
Query: 61 YYMFSSLQFDVPWSKCDPEWADM--STCYVRGVNVSMSHVK--------SARVVICQVES 110
YYMF+S Q +PWS C WAD ST + NVS+++ + + C S
Sbjct: 106 YYMFASFQSPLPWSDCS-SWADENCSTSPITHCNVSLANNGIHENKSWVDSNNLTCINIS 164
Query: 111 ATRK-------------VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKV 157
+ L+ S G++ GP+ LA+CL ++WI+V L KGIK+SGKV
Sbjct: 165 IIYQPGQLPSEQYWDKVALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSGKV 224
Query: 158 VYFAATFPYVILVTLLVTGLLQDGAISGVLYFI--TPTWEKLLDIQVWHAAAGQMFFSLS 215
VYF A FPYV+L+ LLV G +GA G+ Y+I KL++ +VW AA Q+F+SLS
Sbjct: 225 VYFTALFPYVVLLILLVRGATLEGAKDGIEYYIGSQSNLTKLMEAEVWKDAATQIFYSLS 284
Query: 216 VSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVV 275
V+ GGL+ SSYN F NN + DA+VV V + +TS+ +G FS+LG MAH L P+++VV
Sbjct: 285 VAWGGLVALSSYNKFHNNCFSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVV 344
Query: 276 KEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLR 334
G LAF+AYPEAL +LP LWSILFF ML LGLDS+FA +E + T++ D F V++
Sbjct: 345 DSGFDLAFIAYPEALAKLPISPLWSILFFFMLLTLGLDSQFAGIETITTTIQDAFPKVMK 404
Query: 335 NHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLK 394
++P + ++ +++GL CVT G Y + L+D + G +LF A+ E + ++W+YG
Sbjct: 405 KKRIPITLGVCIILFLLGLPCVTQAGIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGN 464
Query: 395 NLCWDLKFMLKFQPG---VYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADG 451
D++ M+ + ++WR W F PV+L I I+S++ Y + YPDW
Sbjct: 465 RFIEDIEMMIGKKSWIFWLWWRACWFFITPVLLIAILIWSLVTFHSPTYGSVPYPDWGTA 524
Query: 452 VGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPAL 498
+GWC+ + IP A+ +++AKG ++ Q+ + P E+WGP L
Sbjct: 525 LGWCMIAFCLIWIPIVAVYKIIKAKG-NIFQRLKSCCRPAENWGPYL 570
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 447 bits (1151), Expect = e-151
Identities = 233/546 (42%), Positives = 331/546 (60%), Gaps = 36/546 (6%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
ML LAG P++FLE+++GQF GP+ +W P +G G+AM+ +S+++ IYYN+IM YTL
Sbjct: 46 MLALAGIPIFFLEVSLGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNIIMCYTL 105
Query: 61 YYMFSSLQFDVPWSKCDPEWAD----------MSTCYVRGVN------------------ 92
+Y+F+SL +PW+ C+ W + +C +
Sbjct: 106 FYLFASLVEVLPWASCNNPWNTPECKDKDKLLLDSCIISDHPKIQIKNSTFCMTAYPNLT 165
Query: 93 -VSMSHVKSARVVICQVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGI 151
V+ + V + V E VLK+S GIE G ++ LA+CL ++W++V L KGI
Sbjct: 166 MVNFTSVGNKTFVSGSEEYFKYNVLKISAGIEYPGEIRWPLALCLFLAWVIVYASLAKGI 225
Query: 152 KTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMF 211
K+SGKVVYF ATFPYV+LV LL+ G+ GA +G+ YFITP WEKL D VW AA Q+F
Sbjct: 226 KSSGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLNDATVWKDAATQIF 285
Query: 212 FSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPI 271
FSLS + GGLI SSYN F NN YRD L+V+ ++ TSI +G V FS++G MAH+L V I
Sbjct: 286 FSLSAAWGGLITLSSYNKFHNNCYRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNI 345
Query: 272 NQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF- 330
V +GPG+AFV YPEAL RLP W+I+FFLML LGLD+ FA +E ++TSVSDEF
Sbjct: 346 ESVADQGPGIAFVVYPEALTRLPLSPFWAIIFFLMLLTLGLDTMFATIETIVTSVSDEFP 405
Query: 331 LVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWV 390
LR HK F + + +++G +T GG Y+L L+D Y +++ IAIFE V + ++
Sbjct: 406 KYLRTHKPLFTLVCCISFFIMGFPMITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYI 465
Query: 391 YGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWAD 450
YGL+ C D++ M+ FQP +WR W F P IL I +S +P+ Y +Y YP+W+
Sbjct: 466 YGLQRFCEDIEMMIGFQPNKFWRVCWAFVTPTILTFILCFSFYQWEPMTYGSYHYPNWSM 525
Query: 451 GVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPAL-RAKGSSLKQKF 509
+GW + S+ IP ++ + A GS +++ L SP DWGP L + +G +++
Sbjct: 526 VLGWLMLACSVIWIPIMFVIKMHLAPGSFIERLKL-VCSPQPDWGPFLAKHRG----ERY 580
Query: 510 LNAISP 515
N I P
Sbjct: 581 KNMIDP 586
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 438 bits (1129), Expect = e-148
Identities = 214/516 (41%), Positives = 323/516 (62%), Gaps = 19/516 (3%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
MLV G P++F+EL+ GQF G LG+W P+ KGVG M+ VS + IYYNV++
Sbjct: 62 MLVFCGIPLFFMELSFGQFASQGCLGVWRVSPMFKGVGYGMMVVSTYIGIYYNVVICIAF 121
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQV------------ 108
YY F S+ +PW+ C+ W V N S + + V+ +
Sbjct: 122 YYFFMSMTRVLPWTYCNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELLNRTLKRTS 181
Query: 109 ---ESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFP 165
E R VL +SD I N G V+ L CL VSW+VV LCL++G+K+SGKVVYF ATFP
Sbjct: 182 PSEEYWRRYVLNISDDIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSGKVVYFTATFP 241
Query: 166 YVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYS 225
YV+L L + G+ +GAISG++Y++TP W+K+LD +VW AA Q+F+SL + GGLI +
Sbjct: 242 YVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKVWGDAASQIFYSLGCAWGGLITMA 301
Query: 226 SYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVA 285
SYN F NN YRD++++S+ + TS+ +G V FSILG MA+ L V +++V GPGLAFVA
Sbjct: 302 SYNKFHNNCYRDSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAFVA 361
Query: 286 YPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF---LVLRNHKLPFCI 342
YPEAL LP LWS+LFF ML +LGL ++F LLE ++T+V DE ++RN K +
Sbjct: 362 YPEALTLLPISPLWSLLFFFMLILLGLGTQFCLLETLVTAVVDEIGNDWIIRN-KTYVTL 420
Query: 343 CTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKF 402
A++ +++G+ T G Y L LMD Y +++ I+ C++++++YG +N D++
Sbjct: 421 GVAIIGFLLGIPLTTQAGIYWLLLMDNYAASFSLVIISCIMCIAIMYIYGHRNYFKDIEM 480
Query: 403 MLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMC 462
ML F P ++++ W F +P I+ I I+++I ++P+ Y +Y YP WA +G+ +A S+
Sbjct: 481 MLGFPPPLFFQICWRFVSPAIIFFILIFTVIQYRPITYNDYVYPGWAIVIGFLMALSSVI 540
Query: 463 QIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPAL 498
IP +A+ + ++G + ++ NA+ P++DWGPAL
Sbjct: 541 CIPIYAIFKICMSEGDTFLERLKNAVKPSKDWGPAL 576
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 437 bits (1125), Expect = e-148
Identities = 208/507 (41%), Positives = 303/507 (59%), Gaps = 18/507 (3%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
MLV+ G P++++ELA+GQ+ G + W CP+ KG+G A+V ++ V +YNVI++++
Sbjct: 46 MLVVGGIPLFYMELALGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFFYNVIIAWS 105
Query: 60 LYYMFSSLQFDVPWSKCD----------PEWADMSTCYVRGVNVSMSHVKSARVVICQVE 109
LYY F+S F++PW+ C+ P W++ T R N S S +
Sbjct: 106 LYYFFASFTFNLPWTSCNNSWNTPNCYEPHWSEDGTVPCRSANQSFSATNISAAEENFTS 165
Query: 110 SAT----RKVLKL--SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAAT 163
+A R VL+L S G+ +LG ++ + +CL +++ L KGI TSGKVV+F A
Sbjct: 166 AALEYFERGVLELHVSRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSGKVVWFTAL 225
Query: 164 FPYVILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIM 223
FPYV+L LL+ G+ G+ +G+ Y++ P +E L +VW AA Q+FFSL G L+
Sbjct: 226 FPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEVWVDAATQVFFSLGPGFGVLLA 285
Query: 224 YSSYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAF 283
Y+SYN F NNVYRDALV S ++ +TS +SG V FS+LG MA PI V EGPGL F
Sbjct: 286 YASYNKFHNNVYRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVF 345
Query: 284 VAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCIC 343
V YPEAL +P WS+LFFLML LGLDS F E ++T++SDEF +++ H+ F C
Sbjct: 346 VVYPEALSTMPGSTFWSLLFFLMLMTLGLDSSFGGSEAIITALSDEFPIIKRHRELFVGC 405
Query: 344 TALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFM 403
+VIGL+ T GG Y L+D Y G ++L +FE V++ W+YGL C D+K M
Sbjct: 406 LFAFYFVIGLAMCTQGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDRFCQDIKEM 465
Query: 404 LKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQ 463
L F+PG+YW+ W F AP+ L Y +I ++PL Y++Y YP WA+ +GW A S+
Sbjct: 466 LGFRPGIYWKICWKFIAPIFLLFNITYGLINYQPLTYDDYTYPTWANVLGWIFAGSSISM 525
Query: 464 IPFWALVVVLRAKGSSLKQKFLNAISP 490
IP A+ +L G + ++ ++P
Sbjct: 526 IPIVAIYQILNTPG-TFIERKKKLVTP 551
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 424 bits (1092), Expect = e-143
Identities = 196/537 (36%), Positives = 281/537 (52%), Gaps = 85/537 (15%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
MLVL G P++FLELA+GQ G +G+WN P G+G+A VS +V +YYNVI+++
Sbjct: 46 MLVLEGIPLFFLELAIGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYYNVIIAWC 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
+Y+F+S Q+ +PWS C +V+ C S T R
Sbjct: 106 FFYLFNSFQYPLPWSSCPT------------NGNGTGYVEE-----CAKSSPTQYFWYRT 148
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L +S I+ G + + +CL ++WI+V LC++KGIK+SGKVVYF ATFPY++L+ L+
Sbjct: 149 TLDISPSIDESGGLNWWMTLCLLLAWIIVYLCMIKGIKSSGKVVYFTATFPYIVLIIFLI 208
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234
GL GA G+ + TP +EKLLD QVW AA Q+FFSL + G LI +SSYN NN
Sbjct: 209 RGLTLKGAGDGLKHMFTPKFEKLLDPQVWLDAATQIFFSLGLGFGSLIAFSSYNPPKNNC 268
Query: 235 YRDALVVSVMDTITSIMSGIVTFSILGAMAH----------------------------- 265
+RDA++VS+++ TSI + IV FS+LG A
Sbjct: 269 HRDAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYVDN 328
Query: 266 --------------------DLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFL 305
L +++ V EG GLAF+ + EA+++ P WS+LFFL
Sbjct: 329 YTAINNVTLTENQTLGLTNCSLEDELDEAV-EGTGLAFIVFTEAIVKFPGAPFWSVLFFL 387
Query: 306 MLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLT 365
ML LGL S F LE VLT + D ++ + K LVC++IGL GNY +
Sbjct: 388 MLLTLGLGSMFGTLEGVLTPLFDSKILPKVPKEYLTGLVCLVCFLIGLIFTQRSGNYWVQ 447
Query: 366 LMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILA 425
+ D Y G +L IA+FE +++ +VYGL D+++M +PG YW+ TW + +P+ +
Sbjct: 448 MFDSYSGTLPLLIIALFEMIAVSYVYGLDRFEDDIEYMTGKRPGWYWKITWRYVSPLAML 507
Query: 426 TIFIYSII--AHKPLHY----------ENYDYPDWADGVGWCLACLSMCQIPFWALV 470
I + SI+ KP Y E+ YP W V L LS+ IP AL+
Sbjct: 508 VILVASIVQLVTKPPTYSAWNAELASTESLPYPGWGLAVIILLILLSILPIPVVALL 564
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 416 bits (1071), Expect = e-142
Identities = 162/301 (53%), Positives = 225/301 (74%)
Query: 132 LAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFIT 191
LA+CL ++WI+V LC+ KG+K+SGKVVYF ATFPYV+L LL+ G+ GA G+LYF+T
Sbjct: 117 LALCLLLAWILVYLCIFKGVKSSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILYFLT 176
Query: 192 PTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIM 251
P W KLLD +VW+AAA Q+FFSLS+ GGLI Y+SYN F NN+YRDAL+VS+++T+TS++
Sbjct: 177 PDWSKLLDPKVWYAAATQIFFSLSIGFGGLITYASYNKFDNNIYRDALIVSILNTLTSLL 236
Query: 252 SGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLG 311
+G V FS+LG +AH+L VP+ VVK GPGLAFV YPEA+ ++P PQLWS+LFF MLF+LG
Sbjct: 237 AGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMPVPQLWSVLFFFMLFLLG 296
Query: 312 LDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYG 371
LDS+FA++E ++T++ DEF LR K + +V +++GL VT GG Y+L L+D Y
Sbjct: 297 LDSQFAIVETIVTAIVDEFPKLRKRKWLVTLGVCVVGFLLGLPYVTQGGIYILDLLDYYA 356
Query: 372 GGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYS 431
++L +A+FE +++ W+YG+ D++FML P +YWR W F PVIL I I+S
Sbjct: 357 ATFSLLVLALFELIAISWIYGVDRFLRDIEFMLGIPPSIYWRICWKFITPVILLVILIFS 416
Query: 432 I 432
+
Sbjct: 417 L 417
Score = 99.5 bits (249), Expect = 2e-22
Identities = 38/67 (56%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG-LWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
ML+L G P++FLELA+GQ+ GP+G W CP+ KGVG A V +S +V IYYNVI+++T
Sbjct: 45 MLLLVGIPLFFLELALGQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIYYNVIIAWT 104
Query: 60 LYYMFSS 66
LYY+F+S
Sbjct: 105 LYYLFAS 111
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 416 bits (1072), Expect = e-140
Identities = 196/496 (39%), Positives = 298/496 (60%), Gaps = 11/496 (2%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
M + G P++++ELA+GQ+ G + +W CPI KG+G A+ ++L V YYN I+++
Sbjct: 46 MAIFGGIPLFYMELALGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYYNTIIAWA 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWAD-MSTCYVRGVNVSMSHVKSARVVICQVESATRKVLK- 117
LYY+ SS +PW+ CD W T Y N++ + ++ E TR VL+
Sbjct: 106 LYYLISSFATTLPWTSCDNSWNTGNCTNYFAKDNITWTLHSTSPAE----EFYTRHVLQV 161
Query: 118 -LSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176
S G+ +LG + LA+CL + + +V + KG+KTSGKVV+ ATFPY++L LL+ G
Sbjct: 162 HRSTGLGDLGGISWQLALCLFLIFTIVYFSIWKGVKTSGKVVWVTATFPYIVLFILLIRG 221
Query: 177 LLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236
GA GV+Y++ P W KLL+ VW AA Q+FFSL G L+ +SSYN F NN Y+
Sbjct: 222 ATLPGAWRGVVYYLKPKWHKLLETGVWVDAAAQIFFSLGPGFGVLLAFSSYNKFHNNCYQ 281
Query: 237 DALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKE-GPGLAFVAYPEALLRLPF 295
DALV SV++ +TS +SG V F++LG MA N + +V + GP L F+ Y EA+ +P
Sbjct: 282 DALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEAIANMPG 341
Query: 296 PQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLRNHKLPFCICTALVCYVIGLS 354
++I+FFLM+ LGLDS F LE V+T+V DEF V+ + F + +VC++ L+
Sbjct: 342 STFFAIIFFLMIITLGLDSTFGGLEGVITAVLDEFPHVIGKRREIFVLGLVIVCFLGSLA 401
Query: 355 CVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRF 414
+T GG YV+ L++ Y G AVL + + E +++ W YG+ C D+K ML F PG +WR
Sbjct: 402 TLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLGFTPGWFWRV 461
Query: 415 TWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLR 474
WV +P+ L I + ++ L +Y+YP W+ VG+C+ S+ IP +AL ++
Sbjct: 462 CWVAISPLFLLFIIVSFLMNPPQLRLFDYNYPYWSIVVGYCIGMSSIICIPIYALYKLII 521
Query: 475 AKGSSLKQKFLNAISP 490
G SLK++ + +I+P
Sbjct: 522 TPG-SLKERIIKSITP 536
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 415 bits (1068), Expect = e-139
Identities = 207/494 (41%), Positives = 311/494 (62%), Gaps = 9/494 (1%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLY 61
L+ AG P++ LE ++GQ+ +G LG+W P+ KGVG+A +S + IYY VI+++ +Y
Sbjct: 89 LIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAAAVLSFWLNIYYIVIIAWAIY 148
Query: 62 YMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSDG 121
Y+++S +PW CD W + C+ + +++ SA VE R + +++DG
Sbjct: 149 YLYNSFTTTLPWKSCDNPW-NTDRCFSNYSMANTTNMTSA-----VVEFWERNMHQMTDG 202
Query: 122 IENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDG 181
+E G ++ LAI LA++W++V C+ KG+ +GKVVYF+AT+PY++L L G+ G
Sbjct: 203 LEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTGKVVYFSATYPYIMLFILFFRGVTLPG 262
Query: 182 AISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVV 241
A G+L++ITP + KL D +VW AA Q+FFS + +G LI SYN F NNVYRD+++V
Sbjct: 263 AKEGILFYITPNFSKLSDSEVWLDAATQIFFSYGLGLGSLIALGSYNPFHNNVYRDSIIV 322
Query: 242 SVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSI 301
+++ TS+ +G V FSI+G MAH PI V GPGLAF+AYPEA+ +LP LW++
Sbjct: 323 CCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLPISPLWAV 382
Query: 302 LFFLMLFVLGLDSEFALLENVLTSVSDEF-LVLRNHKLPFCICTALVCYVIGLSCVTHGG 360
LFF ML +LG+DS+F +E +T++ DEF +LRN + F +V Y+IGLS +T GG
Sbjct: 383 LFFSMLLMLGIDSQFCTVEGFITALVDEFPRLLRNRREIFIAVVCIVSYLIGLSNITQGG 442
Query: 361 NYVLTLMDVY-GGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFC 419
YV L D Y G ++LF+ FECVS+ W YG+ +++ M+ ++P ++W+ W F
Sbjct: 443 IYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNRFYDNIEEMVGYRPCIWWKLCWSFF 502
Query: 420 APVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKGSS 479
P+I+A +F++S + PL NY +P W GVGW +A SM IP + + L KG S
Sbjct: 503 TPIIVAGVFLFSAVQMTPLTMGNYVFPKWGQGVGWFMALSSMVLIPGYMAYMFLTLKG-S 561
Query: 480 LKQKFLNAISPTED 493
LKQ+ I PTED
Sbjct: 562 LKQRLQVMIQPTED 575
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 400 bits (1030), Expect = e-134
Identities = 203/496 (40%), Positives = 301/496 (60%), Gaps = 5/496 (1%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLY 61
+V+AG P++++ELA+GQF G G+W CPI KGVG ++ +SL V +YNVI+++ L+
Sbjct: 47 MVIAGMPLFYMELALGQFNREGAAGVWKICPIFKGVGFTVILISLYVGFFYNVIIAWALF 106
Query: 62 YMFSSLQFDVPWSKCDPEW--ADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKL- 118
Y+FSS ++PW C+ W + S + + S + E R VL L
Sbjct: 107 YLFSSFTGELPWIHCNNSWNSPNCSDAHPGDSSGDSSGLNDTYKTTPAAEYFERGVLHLH 166
Query: 119 -SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177
S GI +LGP + L CL V +++ L KG+KTSGKVV+ AT PYV+L LL+ G+
Sbjct: 167 ESHGIHDLGPPRWQLTSCLVVVIVLLYFSLWKGVKTSGKVVWITATMPYVVLTALLLRGV 226
Query: 178 LQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237
GAI G+ +++ + +L + VW AA Q+ FSL V G LI +SSYN F+NN YRD
Sbjct: 227 TLPGAIDGIKAYLSVDFLRLCEASVWIDAATQICFSLGVGFGVLIAFSSYNKFTNNCYRD 286
Query: 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQ 297
A++ + ++++TS SG V FS LG MA NVPI V K+GPGL F+ YPEA+ LP
Sbjct: 287 AIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFIIYPEAIATLPLSS 346
Query: 298 LWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVT 357
+W+++FF+ML LG+DS +E+V+T + DEF L H+ F + L ++I L CVT
Sbjct: 347 VWAVIFFIMLLTLGIDSAMGGMESVITGLIDEFKFLHRHRELFTLFIVLSTFLISLFCVT 406
Query: 358 HGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWV 417
+GG YV TL+D + GT++LF + E + + W YG+ D++ M+ +PG+YWR W
Sbjct: 407 NGGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFSDDIEEMIGQRPGLYWRLCWK 466
Query: 418 FCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAKG 477
F +P L + + SI+ +P Y +Y +PDWA+ VGWCLA SM +P +A+ G
Sbjct: 467 FVSPCFLLFVVVVSIVTFRPPKYGSYIFPDWANMVGWCLAISSMAMVPLYAIYKFCSLPG 526
Query: 478 SSLKQKFLNAISPTED 493
S ++K AI+P ++
Sbjct: 527 -SFREKLAYAITPEKE 541
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 391 bits (1005), Expect = e-130
Identities = 195/494 (39%), Positives = 301/494 (60%), Gaps = 6/494 (1%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLY 61
L++AG P++++ELA+GQ+ G +W CP KGVG A++ ++L V YYNVI++++LY
Sbjct: 47 LIIAGMPLFYMELALGQYNREGAATVWKICPCFKGVGYAVILIALYVGFYYNVIIAWSLY 106
Query: 62 YMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSM--SHVKSARVVIC-QVESATRKVLKL 118
Y+FSS ++PW+ C W + + +N S+ + K ++ + E R VL L
Sbjct: 107 YLFSSFTSELPWTTCGNVWNSPNCTDPKLLNASVLGNGTKYSKYKLTPAAEFYERGVLHL 166
Query: 119 --SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176
S GI +LG + L +CL V IV+ L KG+KTSGKVV+ AT PYV+L LL+ G
Sbjct: 167 HESAGIHDLGLPRWQLTLCLFVVVIVLFFSLWKGVKTSGKVVWITATLPYVVLFVLLIHG 226
Query: 177 LLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236
+ GA +G+ ++ +++L + VW AA Q+F+SL G LI ++SYN F NN YR
Sbjct: 227 VTLPGAFNGINAYLHIDFKRLKEATVWIDAATQIFYSLGAGFGVLIAFASYNKFDNNCYR 286
Query: 237 DALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFP 296
DAL+ S ++ +TS +SG FSILG MAH+ V I V EG GL F+ YPEA+ L
Sbjct: 287 DALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEAISTLSGS 346
Query: 297 QLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCV 356
W+++FF+ML LG+DS +E V+T ++D+F +L+ H+ F A + +++ L C+
Sbjct: 347 TFWAVVFFIMLLTLGIDSSMGGMEAVITGLADDFSILKKHRKLFTFGVAFITFLLALFCI 406
Query: 357 THGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTW 416
T+GG YVLTL+D + GT++LF + E + + W YG+ D++ M+ F+PG+YWR W
Sbjct: 407 TNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFSDDIQQMMGFRPGLYWRLCW 466
Query: 417 VFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVVVLRAK 476
F +P L + I SII KPL Y++Y++P WA+ GW +A SM +P + +
Sbjct: 467 KFVSPAFLLFVVIVSIINFKPLTYDDYNFPPWANRTGWGIALSSMLLVPIYVIYKFFTVP 526
Query: 477 GSSLKQKFLNAISP 490
G + +++ I+P
Sbjct: 527 G-TFEERLAYCITP 539
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 383 bits (985), Expect = e-127
Identities = 188/501 (37%), Positives = 310/501 (61%), Gaps = 14/501 (2%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
L G P++FLE A+GQ+ G + W CP+ +G+G A + ++ YY +++++ L
Sbjct: 47 LFTCGIPVFFLETALGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYYIIVLAWAL 106
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTC---YVRGVNVSMSHVKSARVVICQVESATRKVLK 117
+Y+F+S +++PWS C+ W + C R +V+++ + VI E R+VL+
Sbjct: 107 FYLFNSFTWELPWSSCNHTW-NTENCVEFQKRNYSVNVTLENATSPVI---EFWERRVLR 162
Query: 118 LSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177
+SDGIE++G ++ +LA+CL ++W++ C+ KG+K++GKVVYF ATFPY++LV LL+ G+
Sbjct: 163 ISDGIEHIGSLRWELALCLLLAWVICYFCIWKGVKSTGKVVYFTATFPYLMLVVLLIRGV 222
Query: 178 LQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237
GA G+ +++ P +L D QVW A Q+FFS ++ +G L SYN ++NN YRD
Sbjct: 223 TLPGASLGIQFYLYPDLSRLADPQVWMDAGTQIFFSYAICLGCLTALGSYNKYNNNCYRD 282
Query: 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQ 297
+ + +++ TS ++G FSILG MA++ VPI++V + GPGLAF+AYP A+ +PF
Sbjct: 283 CIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMPFSP 342
Query: 298 LWSILFFLMLFVLGLDSEFALLENVLTSVSD---EFLVLRNHKLPFCICTALVCYVIGLS 354
LW+ FF+M+ +LGLDS+F +E+++T++ D E +N + + ++V +++GL
Sbjct: 343 LWACFFFIMIVLLGLDSQFVCVESLVTAMVDMYPEVFRKKNRRELLILFVSIVSFLVGLI 402
Query: 355 CVTHGGNYVLTLMDVYGG-GTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWR 413
+T GG YV L D Y G +LF+AIFE + + WVYG +++ M+ ++PG Y +
Sbjct: 403 MLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADRFYDNIEDMIGYRPGPYIK 462
Query: 414 FTWVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVVV 472
+ W+F P + F++S+I + PL Y Y YP W D +GW LA SM IP W + +
Sbjct: 463 YCWLFITPAVCVATFLFSLIKYTPLKYNKEYVYPWWGDAIGWLLALSSMVCIPLWIIYKL 522
Query: 473 LRAKGSSLKQKFLNAISPTED 493
KG SL+++ + P+ D
Sbjct: 523 STTKG-SLRERIHQLLCPSPD 542
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 375 bits (965), Expect = e-124
Identities = 188/486 (38%), Positives = 295/486 (60%), Gaps = 10/486 (2%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
L G P++FLE+A+GQ+ G + W CPI G+G A + + ++ IYY VI+++ L
Sbjct: 47 LFGGGLPVFFLEVALGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYYIVILAWGL 106
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTC---YVRGVNVSMSHVKSARVVICQVESATRKVLK 117
YY+F S Q ++PW+ C+ W + C +R + + + E R VL
Sbjct: 107 YYLFQSFQSELPWAHCNQSW-NTPNCVEDTLRKNKTLWASINATNFTSPVTEFWERNVLS 165
Query: 118 LSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGL 177
LS GIE++G +K DLA+CL + W++ C+ KG+K++GKVVYF ATFP+++L+ LL+ G+
Sbjct: 166 LSSGIEHVGTIKWDLALCLLLVWVICFFCIWKGVKSTGKVVYFTATFPFLMLIVLLIRGV 225
Query: 178 LQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRD 237
GA G+ +++ P +L D QVW A Q+FFS ++ +G + SYN + N YRD
Sbjct: 226 TLPGAAEGIKFYLYPDITRLGDPQVWIDAGTQIFFSYAICLGAMTSLGSYNKYKYNCYRD 285
Query: 238 ALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQ 297
+++ +++ TS +SG FS+LG MA + V I V + GPGLAF+AYP+A+ +P P
Sbjct: 286 CMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMPLPT 345
Query: 298 LWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVC---YVIGLS 354
W+ILFF+ML +LGLDS+F +E +TS+ D + I A+VC Y++GL+
Sbjct: 346 FWAILFFIMLLLLGLDSQFVEVEGQITSLVDLYPSFLRKGYRREIFIAIVCFISYLLGLT 405
Query: 355 CVTHGGNYVLTLMDVYGG-GTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWR 413
VT GG YV L D Y G +L++A FEC+++ WVYG N ++ M+ ++PG + +
Sbjct: 406 MVTEGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADNFYDAIEDMIGYRPGPWMK 465
Query: 414 FTWVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVVV 472
++W+ PV+ FI+S++ +KPL Y Y YP+WA G+GW LA SM IP ++ +
Sbjct: 466 WSWIVITPVLCVGCFIFSLVKYKPLTYNKVYVYPEWAIGLGWVLALSSMICIPMVVVIRI 525
Query: 473 LRAKGS 478
+++ G
Sbjct: 526 IQSDGP 531
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 374 bits (961), Expect = e-123
Identities = 192/514 (37%), Positives = 297/514 (57%), Gaps = 27/514 (5%)
Query: 4 LAGKPMYFLELAVGQFGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYM 63
+ G P++FLE+A+GQF G + WN P+ KG+G A + + YY +I+ + LYY+
Sbjct: 49 VGGIPVFFLEIALGQFMKQGGINAWNIAPLFKGLGYASMVIVFFCNTYYIMILVWGLYYL 108
Query: 64 FSSLQFDVPWSKCDPEW-----------------ADMSTCYVRGVNVSMSHVKSARVVIC 106
S +PW+ C W + ++ +N+S + + R +
Sbjct: 109 VHSFTNTLPWATCGHPWNTENCTEIFRHEDCANGSLANSWSQTFLNLSCDELANKRSPV- 167
Query: 107 QVESATRKVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPY 166
+E KVL+LS G+E G + ++ +CL +W++V C+ KG+K++GK+VYF A FPY
Sbjct: 168 -IEFWENKVLRLSGGLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTGKIVYFTALFPY 226
Query: 167 VILVTLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSS 226
V+L+ LLV G+ GA+ G++Y++ P W KL + QVW A Q+FFS ++ +G L S
Sbjct: 227 VVLIVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQVWIDAGTQIFFSYAIGLGALTALGS 286
Query: 227 YNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAY 286
YN F NN YRDA +++++++ TS +G V FS+LG MA + V I++V + GPGLAF+AY
Sbjct: 287 YNRFHNNCYRDAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAY 346
Query: 287 PEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTAL 346
P+A+ +P LW+ LFF ML +LGLDS+F +E +T + D F +L I AL
Sbjct: 347 PKAVTLMPVAPLWAALFFFMLLLLGLDSQFVGVEGFITGILDLFPQKYYGRLRREITAAL 406
Query: 347 ---VCYVIGLSCVTHGGNYVLTLMDVY-GGGTAVLFIAIFECVSLVWVYGLKNLCWDLKF 402
+C++I LS VT GG YV L D Y G +L+ A +ECV + WVYG D+
Sbjct: 407 CCLLCFLIDLSMVTQGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADRFMDDIAR 466
Query: 403 MLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSM 461
M+ ++P + ++ W P++ IF++ ++ +KPL Y Y YP W + +GW LA SM
Sbjct: 467 MIGYRPLPWMKWCWSVITPLVCVGIFLFHVVNYKPLTYNKTYVYPWWGEAIGWALALSSM 526
Query: 462 CQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWG 495
IP L +LRAKG S ++++ +P WG
Sbjct: 527 LCIPLTVLYKLLRAKG-SFRERWQLLTTPV--WG 557
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 370 bits (951), Expect = e-122
Identities = 193/496 (38%), Positives = 301/496 (60%), Gaps = 9/496 (1%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
L G P++FLE A+GQ+ G + W CPI +G+G A + + +YY +I+S+ L
Sbjct: 48 LFTCGIPLFFLETALGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYYIIILSWAL 107
Query: 61 YYMFSSLQFDVPWSKCDPEW-ADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLS 119
+Y+FSS +PW+ C+ W +D+ ++ + +E ++VL L+
Sbjct: 108 FYLFSSFTSVLPWATCNNPWNSDLCVDFLNHSGAD-NRTPPENATSPVMEFWEKRVLGLT 166
Query: 120 DGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQ 179
DGI LG V+ +LA+CL ++WI+ C+ KG+K++GKVVYF ATFPY++LV LLV G+
Sbjct: 167 DGIHKLGTVRWELALCLLLAWIICYFCIWKGVKSTGKVVYFTATFPYLMLVILLVRGVTL 226
Query: 180 DGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDAL 239
GA G+++++ P +L D QVW A Q+ FS ++ G L SYN ++NN YRD +
Sbjct: 227 PGAAEGIIFYLKPDLSRLADPQVWMDAGTQILFSYAICQGCLTALGSYNKYTNNCYRDCI 286
Query: 240 VVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLW 299
++ +++ TS ++G FS+LG MA + VPI++V + GPGLAF+AYP A+ +P QLW
Sbjct: 287 MLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAFIAYPTAVTMMPVSQLW 346
Query: 300 SILFFLMLFVLGLDSEFALLENVLTSVSDEF---LVLRNHKLPFCICTALVCYVIGLSCV 356
S LFFLML LGLDS+F +E+++T+ D F + + + A++CY++GL V
Sbjct: 347 SCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGRRELLILAIAVICYLLGLLLV 406
Query: 357 THGGNYVLTLMDVYGG-GTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFT 415
T GG Y+ L D Y GT +LF+AIFE + + WVYG +++ M+ ++P +
Sbjct: 407 TEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFYDNIEDMIGYRPWPLIKIC 466
Query: 416 WVFCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVVVLR 474
W+ P + +F++S+I + PL Y N Y YP W +GW +A SM IP +A+ ++L+
Sbjct: 467 WLVFTPGLCLAVFLFSLIKYTPLKYNNSYVYPPWGYVLGWLMALSSMVCIPLYAIFILLK 526
Query: 475 AKGSSLKQKFLNAISP 490
KG SLKQ+ + ISP
Sbjct: 527 TKG-SLKQRLMQLISP 541
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 356 bits (915), Expect = e-117
Identities = 183/486 (37%), Positives = 297/486 (61%), Gaps = 11/486 (2%)
Query: 6 GKPMYFLELAVGQFGGVGPLGLW-NCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTLYYMF 64
G P++FLE A+GQF G + W CP+ +G+G A + + +YY +I+++ ++Y+F
Sbjct: 52 GIPVFFLETALGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLF 111
Query: 65 SSLQFDVPWSKCDPEWADMSTCYVRGVNVS-MSHVKSARVVICQVESATRKVLKLSDGIE 123
+ ++PW+ C EW + + +N S SHV +E R+VL +SDGIE
Sbjct: 112 NCFTTELPWATCGHEWNTENCVEFQKLNSSNCSHVSLQNATSPVMEFWERRVLAISDGIE 171
Query: 124 NLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAI 183
++G ++ +LA+CL +W + C+ KG K++GKVVY ATFPY++L+ LL+ G+ GA
Sbjct: 172 HIGNLRWELALCLLAAWTICYFCIWKGTKSTGKVVYVTATFPYIMLLILLIRGVTLPGAS 231
Query: 184 SGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSV 243
G+ +++ P +L D QVW A Q+FFS ++ +G L SYN+++NN YRD +++
Sbjct: 232 EGIKFYLYPDLSRLSDPQVWVDAGTQIFFSYAICLGCLTALGSYNNYNNNCYRDCIMLCC 291
Query: 244 MDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILF 303
+++ TS ++G FS+LG MA++ VPI +V + GPGLAF+AYP+A+ +P LW+ LF
Sbjct: 292 LNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMPLSPLWATLF 351
Query: 304 FLMLFVLGLDSEFALLENVLTSVSDEFLVL-----RNHKLPFCICTALVCYVIGLSCVTH 358
F+ML LGLDS+F +E+++T+V D + + R L + ++V Y +GL +T
Sbjct: 352 FMMLIFLGLDSQFVCVESLVTAVVDMYPKVFRRGYRRELLILAL--SIVSYFLGLVMLTE 409
Query: 359 GGNYVLTLMDVYGG-GTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWV 417
GG Y+ L D Y G +LF+AIFEC+ + WVYG +++ M+ ++P ++ W+
Sbjct: 410 GGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNRFYDNIEDMIGYRPLSLIKWCWM 469
Query: 418 FCAPVILATIFIYSIIAHKPLHYEN-YDYPDWADGVGWCLACLSMCQIPFWALVVVLRAK 476
P I A IFI+ ++ +KPL Y N Y YPDW G+GW +A SM IP W + + + +
Sbjct: 470 VITPGICAGIFIFFLVKYKPLKYNNVYTYPDWGYGIGWLMALSSMICIPLWICIKMWKTE 529
Query: 477 GSSLKQ 482
G+ ++
Sbjct: 530 GTFPEK 535
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 299 bits (767), Expect = 1e-94
Identities = 184/548 (33%), Positives = 282/548 (51%), Gaps = 95/548 (17%)
Query: 2 LVLAGKPMYFLELAVGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
LV G P++ LELA+GQ G +G+W P GVG+ VTVS +V +YYN I+++ L
Sbjct: 48 LVFEGIPLFHLELAIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYYNTILAWVL 107
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RKV 115
+Y +S Q +PWS C + T +V CQ +A R+
Sbjct: 108 WYFLNSFQHPLPWSSCPLD--LNRTGFVEE---------------CQGSTAVSYFWYRQT 150
Query: 116 LKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVT 175
L ++ I + G ++ L +CLA W +V LC+++GI+T+GKV+YF A FPY++L L+
Sbjct: 151 LNITPDINDSGSIQWWLLLCLAACWAIVYLCVIRGIETTGKVIYFTALFPYLVLTIFLIR 210
Query: 176 GLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVY 235
GL GA G++Y TP L + +VW AA Q+FFSLS++ GG I ++SYN N+
Sbjct: 211 GLTLPGATEGLIYLFTPNMHILQNPRVWLDAATQIFFSLSLAFGGHIAFASYNPPRNDCE 270
Query: 236 RDALVVSVMDTITSIMSGIVTFSILGAMA----------------HDLNVPINQVVKE-- 277
+DA+ +++++++TS+ + I FS+LG A ++ + P + ++
Sbjct: 271 KDAVTIALVNSMTSLYASIPVFSVLGFKATNDYEHCLDRNILSLINEFDFPEQSISRDNY 330
Query: 278 ----------------------------------GPGLAFVAYPEALLRLPFPQLWSILF 303
GPGLAF+ + EA+L +P Q+W++LF
Sbjct: 331 PSVLMHLNATWPERVAQLPLKACLLEDFLDKSASGPGLAFIVFTEAVLHMPGAQVWAVLF 390
Query: 304 FLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLS--CVTHG-G 360
F MLF LGL S F +E V+T + D ++ R +P T LVC V LS C T G
Sbjct: 391 FGMLFTLGLSSMFGNVEGVITPLLDVGVLPRW--VPKEALTGLVCLVCFLSALCFTLQSG 448
Query: 361 NYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCA 420
NY L + D + +L IA FE V +V+VYG+K C D+++M +P +YWR TW +
Sbjct: 449 NYWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKRFCDDIEWMTGRRPSLYWRLTWRVVS 508
Query: 421 PVILATIFIYSII--AHKPLHYENYD-------------YPDWADGVGWCLACLSMCQIP 465
P++L TIF+ II KP Y+ ++ YP W + L+ L + +P
Sbjct: 509 PLLLLTIFVAYIILLFQKPPSYKAWNPKYELFPSREEKLYPGWVQAICVLLSLLPVLWVP 568
Query: 466 FWALVVVL 473
AL +L
Sbjct: 569 VVALAQLL 576
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 296 bits (759), Expect = 7e-94
Identities = 175/507 (34%), Positives = 277/507 (54%), Gaps = 55/507 (10%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
+L++ G P++FLEL+VGQ G +G+WN P G+G A V L V +YYNVI+ ++
Sbjct: 46 LLIVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYYNVIIGWS 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
L+Y S Q+ +PW +C V+ N S + V+ C+ SAT R+
Sbjct: 106 LFYFSQSFQYPLPWDQCP---------LVK--NASHTFVEPE----CEKSSATTYYWYRE 150
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L +S I G + + ICL +W++V L ++KGI++SGK++YF++ FPYV+L LV
Sbjct: 151 ALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLACFLV 210
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234
GLL +G++ G+ + TP E +L+ +VW AA Q+FF+L + GG+I +SSYN NN
Sbjct: 211 RGLLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNC 270
Query: 235 YRDALVVSVMDTITSIMSGIVTFSILG------------AMAHD---LNVPINQVVKEGP 279
+ DA++VS ++ TS+++ +V F++LG A+ D + +++ V +G
Sbjct: 271 HFDAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAV-QGT 329
Query: 280 GLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLP 339
GLAF+A+ EA+ P WS++FFLML LGL S F +E + T + D F V K
Sbjct: 330 GLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGITTPIVDTFKV---RKEI 386
Query: 340 FCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWD 399
+ L ++IGL V GNY +T+ D Y +L + I E +++ W+YG+K D
Sbjct: 387 LTVICCLFAFLIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYGIKKFMED 446
Query: 400 LKFMLKFQPGVYWRFTWVFCAPVILATIFIYSII--AHKPLHY----------ENYDYPD 447
LK ML F+P Y+ + W + +P+ L + SI+ P Y E YP
Sbjct: 447 LKDMLGFRPSRYYYYMWKYISPLCLLVLLTASIVQMGLSPPGYNAWIEDEAAEEFLSYPT 506
Query: 448 WADGVGWCLACLSMCQIPFWALVVVLR 474
W V L +++ +P +V ++R
Sbjct: 507 WGMAVCISLIVVAILPVP---VVFIVR 530
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 293 bits (751), Expect = 3e-92
Identities = 173/544 (31%), Positives = 265/544 (48%), Gaps = 91/544 (16%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
ML+L G P+ +LELAVGQ G +G W P GVGVA V VS + +YYNVI ++
Sbjct: 49 MLILEGMPLLYLELAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYYNVINAWA 108
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
+Y+F S Q +PWS C ++ ++ C+ S T R+
Sbjct: 109 FWYLFHSFQDPLPWSVC-----------------PLNSNRTGYTEECEKASPTQYFWYRE 151
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L +S IE G ++ + A+CL ++W+VV LC+++G +++GKVVY AT PY++L+ L+
Sbjct: 152 TLNISPSIEESGGIQWEQALCLILAWLVVYLCILRGTESTGKVVYVTATLPYLVLIIYLI 211
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234
GL GA +G+ Y TP E+L + + W AA Q+FFSL + G LI ++SYN+ SNN
Sbjct: 212 RGLTLHGAANGLKYMFTPKLEQLANPKTWINAATQIFFSLGLGFGSLIAFASYNEPSNNC 271
Query: 235 YRDALVVSVMDTITSIMSGIVTFSI----------------------------------- 259
R A++VS++++ TSI + IVTFSI
Sbjct: 272 ERHAIIVSLINSGTSIFASIVTFSIYGFKATFNYENCLKKVILLLTNTFDLEEGSITMSN 331
Query: 260 LGAMAHDLNVPINQ-------------------VVKEGPGLAFVAYPEALLRLPFPQLWS 300
L M LN Q +G GLAF+ Y EA+ + QLWS
Sbjct: 332 LEDMKKYLNAAYPQEYAQIAPQLKNCSLEKELDTAVQGTGLAFIVYSEAIKNMEVSQLWS 391
Query: 301 ILFFLMLFVLGLDSEFALLENVLTSVSD-EFLVLRNHKLPFCICTALVCYVIGLSCVTHG 359
+L+F ML +LG+ S +LT ++D + + K + +IGL
Sbjct: 392 VLYFFMLLMLGIGSMLGNTAAILTPLTDSKIISSHLPKEAISGLVCFINCIIGLVFTMEA 451
Query: 360 GNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFC 419
GNY + + Y ++L I + E +++ +VYGL+ DL+ M +P YW+ W F
Sbjct: 452 GNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRRFEKDLEAMTGHKPSWYWKIMWAFT 511
Query: 420 APVILATIFIYSIIAH---KPLHYENY----------DYPDWADGVGWCLACLSMCQIPF 466
+P+++ ++FI+ + + L Y+ + DYP +A V L S IP
Sbjct: 512 SPLLIISLFIFYLTDYILTGTLQYQAWDATLGQLVTKDYPSYALAVIGLLVASSTMCIPL 571
Query: 467 WALV 470
ALV
Sbjct: 572 GALV 575
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 274 bits (703), Expect = 5e-85
Identities = 170/550 (30%), Positives = 276/550 (50%), Gaps = 95/550 (17%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNCC-PIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
+LV G P+ LE A+GQ G +G+W+ P KGVG+A + VS +V +YYN I+++
Sbjct: 46 LLVFEGIPLLHLEFAIGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYYNTIIAWV 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
++Y F+S Q +PWS+C ++ ++ + C S R+
Sbjct: 106 MWYFFNSFQEPLPWSQC-----------------PLNENRTGYIPECAKSSPVDYFWYRE 148
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L S I++ G ++ + +CLA +W V+ +C ++GI+T+GK VY +T PY++L L+
Sbjct: 149 TLNTSTSIDDSGGIQWWMVLCLACAWGVLYVCTIRGIETTGKAVYVTSTLPYLVLTIFLI 208
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234
GL G+++G+ + TP +L + W A Q+F+S S++ GGLI +SSYN NN
Sbjct: 209 RGLTLKGSVNGIKFLFTPDINELANPVTWLDAGAQVFYSFSLAFGGLISFSSYNSVHNNC 268
Query: 235 YRDALVVSVMDTITSIMSGIVTFSILG----------------AMAHDLNVP-------- 270
+DA+++SV++ TSI + V +SI+G + + ++P
Sbjct: 269 EKDAVIISVINGFTSIYAATVIYSIIGFRATERFDDCFDGNILTLINAFDLPEGNITQDN 328
Query: 271 -------------------------INQVVKE---GPGLAFVAYPEALLRLPFPQLWSIL 302
+N + E G GLAF+ + EA+ ++P LWS+L
Sbjct: 329 YQDMQQSLNSTDPDIISSLSLQTCDLNNFLSEGVEGTGLAFIVFTEAITKMPLSPLWSVL 388
Query: 303 FFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVC---YVIGLSCVTHG 359
FF+MLF LGL S F +E VL + D L + P I T L+C ++IGL V
Sbjct: 389 FFIMLFCLGLSSMFGNMEGVLVPLQD--LKVIPKSWPKEIITGLICLVSFLIGLIFVLGS 446
Query: 360 GNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFC 419
GNY L L D + G +L IA E S+V+VYG+ D++FM+ +P ++W+ TW
Sbjct: 447 GNYWLALFDSFAGSIPLLIIAFCEMFSVVYVYGIDRFNKDIEFMIGHKPNIFWQATWRVI 506
Query: 420 APVILATIFI--YSIIAHKPLHYENYD-------------YPDWADGVGWCLACLSMCQI 464
+P+I+ IF+ + + + L Y +D YP W + LA + I
Sbjct: 507 SPLIMLVIFLFYFVVKVSQELFYSAWDPEYEEFPKSQKISYPTWIYVIIVILAGVPSLAI 566
Query: 465 PFWALVVVLR 474
P +A+ +R
Sbjct: 567 PGYAIYKAIR 576
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 272 bits (698), Expect = 2e-84
Identities = 174/556 (31%), Positives = 274/556 (49%), Gaps = 103/556 (18%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
+L++ G P++FLEL+VGQ G +G+WN P G+G A V V +YYNVI+ ++
Sbjct: 46 LLLVIGIPLFFLELSVGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYYNVIIGWS 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
L+Y S Q +PW +C P + S +V C+ SAT R+
Sbjct: 106 LFYFSQSFQQPLPWDQC-PLVKNASHTFVEPE--------------CEKSSATTYYWYRE 150
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L +S I G + + ICL +W++V L ++KGI++SGK++YF++ FPYV+L+ L+
Sbjct: 151 ALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIMYFSSLFPYVVLICFLI 210
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNV 234
LL +G++ G+ + TP E +L+ +VW AA Q+FF+L + GG+I +SSYN NN
Sbjct: 211 RALLLNGSVDGIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNC 270
Query: 235 YRDALVVSVMDTITSIMSGI---------------------------------------- 254
+ DA++VS ++ TS+++ +
Sbjct: 271 HFDAVLVSFINFFTSVLATLVVFAVLGFKANVINEKCIIQNSEKIIKLLKMGNLSQDIIP 330
Query: 255 --VTFSILGAMAHDLNVPINQVVKE----------------------GPGLAFVAYPEAL 290
+ FS + A ++L I Q VKE G GLAF+A+ EA+
Sbjct: 331 HHINFSSITAEDYNLVYDIIQKVKEEEFPALGLKSCQIEDELNKAVQGTGLAFIAFTEAM 390
Query: 291 LRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYV 350
P WS++FFLML LGL S F +E ++T + D F V R L C L+ +
Sbjct: 391 THFPASPFWSVMFFLMLVNLGLGSMFGTIEGIITPIVDTFKV-RKEILTVICC--LLAFC 447
Query: 351 IGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGV 410
IGL V GNY +T+ D Y +L + I E +++ +VYG+ DLK ML F P
Sbjct: 448 IGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYGIDKFMEDLKDMLGFTPNR 507
Query: 411 YWRFTWVFCAPVILATIFIYSII--AHKPLHY----------ENYDYPDWADGVGWCLAC 458
Y+ + W + +P++L ++ + S++ P Y E YP W V L
Sbjct: 508 YYYYMWKYISPLVLLSLLVASVVQMGLSPPGYNAWIEDKATEEFLSYPTWGLVVCISLVV 567
Query: 459 LSMCQIPFWALVVVLR 474
L++ +P +V ++R
Sbjct: 568 LAILPVP---VVFIIR 580
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 260 bits (665), Expect = 2e-79
Identities = 178/556 (32%), Positives = 273/556 (49%), Gaps = 103/556 (18%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWN-CCPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
+L++ G P++FLELAVGQ G +G+WN CP G+G A V V +YYNVI+ ++
Sbjct: 46 LLIIIGIPLFFLELAVGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYYNVIIGWS 105
Query: 60 LYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESAT-----RK 114
++Y F S Q+ +PWS+C VR +V++ + C+ SAT R+
Sbjct: 106 IFYFFKSFQYPLPWSECP---------IVRNGSVAVVEAE------CEKSSATTYFWYRE 150
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLV 174
L +S+ I G + + +CL V+W +V L ++KGI++SGKV+YF++ FPYV+LV LV
Sbjct: 151 ALDISNSISESGGLNWKMTLCLLVAWSIVGLAMIKGIQSSGKVMYFSSLFPYVVLVCFLV 210
Query: 175 TGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYS--------- 225
GLL GA+ G+L+ TP +K+LD QVW AA Q+FF+L + GG+I +S
Sbjct: 211 RGLLLRGAVDGILHMFTPKLDKMLDPQVWREAATQVFFALGLGFGGVIAFSSYNKQDNNC 270
Query: 226 -------SYNDFSNNVYRDALVVSVMDTITSIMSGIVTFS----ILG-----AMAHDLNV 269
S+ +F +V +V +V+ +IM+ ILG ++HDL
Sbjct: 271 HFDAALVSFINFFTSVLATLVVFAVLGFKANIMNEKCVVENAEKILGYLNTNVLSHDLIP 330
Query: 270 P-----------------INQVVKE----------------------GPGLAFVAYPEAL 290
P + VKE G GLAF+A+ EA+
Sbjct: 331 PHVNFSHLTTKDYAEMYRVIMTVKEDHFKELGLDACLLEDELDKSVQGTGLAFIAFTEAM 390
Query: 291 LRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYV 350
P WS++FFLML LGL S + + T + D F V K F + + ++
Sbjct: 391 THFPASPFWSVMFFLMLINLGLGSMIGTMSGITTPIIDTFKV---RKEVFTVGCCIFAFL 447
Query: 351 IGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGV 410
+GL V GNY +T+ D Y + + I E +++ W+YG K +L ML F+P
Sbjct: 448 VGLIFVQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKKFMQELTEMLGFRPYS 507
Query: 411 YWRFTWVFCAPVILATIFIYSII--AHKPLHYENY----------DYPDWADGVGWCLAC 458
++ +TW + +P+ +A + SII P Y + YP WA + L
Sbjct: 508 FYFYTWKYVSPICMAVLMTASIIQLGVSPPGYSAWIREEAAERFLFYPTWAMALLITLII 567
Query: 459 LSMCQIPFWALVVVLR 474
L+ +P LV +LR
Sbjct: 568 LASLPLP---LVFILR 580
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 257 bits (659), Expect = 6e-79
Identities = 143/488 (29%), Positives = 238/488 (48%), Gaps = 56/488 (11%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLGLWNC-CPIAKGVGVAMVTVSLIVCIYYNVIMSYT 59
ML L G P+ FLE+AVGQ G + +W P GVG + V +V +YYNV+ S+
Sbjct: 46 MLFLVGIPLLFLEMAVGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYYNVVNSWA 105
Query: 60 LYYMFSSLQFDVPWSKC-DPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKL 118
L+Y+ S QF +PW +C + + C + + +K LK
Sbjct: 106 LFYLGHSFQFPLPWEQCPLVKNSSDPECARTTPSGYFWY---------------QKTLKA 150
Query: 119 SDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLL 178
SD IE+ G + LA+ L V+W +V + +++G+K++GK + F PYVIL+ LL+ L
Sbjct: 151 SDRIEDGGSLVGHLALSLFVAWCLVYVTMIRGLKSTGKSIIFLVLLPYVILLCLLIRSLF 210
Query: 179 QDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDA 238
+GA G+L+ + L ++ +W A GQ+ FSL + G LI Y+SY NN DA
Sbjct: 211 LEGAFFGLLWLLVAKVSSLANLSIWRVAGGQVLFSLGLGFGTLITYASYMPRKNNCLTDA 270
Query: 239 LVVSVMDTITSIMSGIVTFSILGAMAHDLN------------------------------ 268
VV++++ +TS+++ + F+++G A
Sbjct: 271 FVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPPADLSLD 330
Query: 269 ------VPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENV 322
+ + + EGPG AF+A+ EA+ P W+I+FFL L + GL + F +++ +
Sbjct: 331 PASIYLLWLFNLPMEGPGFAFLAFSEAISLAPGSAFWAIVFFLALLLAGLSTMFGIMQGI 390
Query: 323 LTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIF 382
T + D F R H + + ++ GL G+Y +L+D Y ++FI +F
Sbjct: 391 YTPLQDTFSFFRKHPKLLTVLVCVGLFLGGLVFTQPSGSYFRSLLDDYLVPLPIIFIVVF 450
Query: 383 ECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYEN 442
E ++L W YG K DL+F+L + W + +PV+L +F++++I L+ +
Sbjct: 451 ENIALAWAYGAKRFLADLEFLLGGPISSIVWWLWSYLSPVVLLGLFLWTLI---QLYVQP 507
Query: 443 YDYPDWAD 450
Y W
Sbjct: 508 PTYLAWDS 515
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 243 bits (624), Expect = 2e-74
Identities = 145/462 (31%), Positives = 228/462 (49%), Gaps = 41/462 (8%)
Query: 2 LVLAGKPMYFLELAVGQ-FGGVGPLGLWNCCPIAKGVGVAMVTVSLIVCIYYNVIMSYTL 60
L+ AG P+ LE +G F G PL + +G V V+ ++ YY VI+++ L
Sbjct: 47 LLTAGIPLLILEYGLGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYYAVIIAWAL 106
Query: 61 YYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVLKLSD 120
Y+F S F + W DPE L+LSD
Sbjct: 107 SYLFFS--FTLAWGD-DPE-----------------------------AFFFGDFLQLSD 134
Query: 121 GIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTS-GKVVYFAATFPYVILVTLLVTGLLQ 179
G +LG + I L + W+++ L +G+K K +V+ + L++ L
Sbjct: 135 GPFDLGGFVWPILIALVLVWLIIWFILYRGVKKGIEKANKIFMPLLFVLFLILVIRALTL 194
Query: 180 DGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDAL 239
GA G+ TP W LLD +VW AA GQ+FFSLSV G +I Y+SY +++ +AL
Sbjct: 195 PGAADGLNALFTPDWSALLDPKVWIAAYGQIFFSLSVGFGIMITYASYLPKKSDLTNNAL 254
Query: 240 VVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEAL-LRLPFPQL 298
+V+ ++ I++GI FSILG MA VP+++VV G GLAFVA+P+A+ L P L
Sbjct: 255 IVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLMPPGGAL 314
Query: 299 WSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCVTH 358
+ +LFFL L GL S +L+E V++++ D+F + R K +C LV +++ L T
Sbjct: 315 FGVLFFLSLVFAGLTSLISLVEVVISALQDKFGLSRK-KAVTIVC--LVGFLVSLLFATG 371
Query: 359 GGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYWRFTWVF 418
G Y+L ++D + ++ + + E + + WV+G + L L + F+ G +W F
Sbjct: 372 AGLYLLDIVDHFINNYGIVLVGLVEVIVVGWVFGAEKLREHLNAVSDFKVGKWWDFLIKV 431
Query: 419 CAPVILATIFIYSIIAHKPLHYENYDYPDWADGV-GWCLACL 459
P++L + I +I Y YP WA + GW + L
Sbjct: 432 VTPLVLGYMLILGLIGLLTEPYG--GYPVWALLIFGWGIVAL 471
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 192 bits (491), Expect = 6e-56
Identities = 88/263 (33%), Positives = 142/263 (53%), Gaps = 5/263 (1%)
Query: 136 LAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTGLLQDGAISGVLYFITPTW- 194
LA +W VV LC+ +G+ ++G+VVY P V+++ LL G A G+ +
Sbjct: 117 LAFTWFVVWLCVFRGVGSTGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFATWRG 176
Query: 195 EKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYRDALVVSVMDTITSIMSGI 254
+KL ++W AAAGQ+FFS V G + Y+SYN +N +DAL+++ +++ I++G
Sbjct: 177 DKLASGEIWQAAAGQVFFSTGVGFGYMTAYASYNSKFSNAVQDALIIAGSNSLFEIIAGF 236
Query: 255 VTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLFVLGLDS 314
F I+G + V G L FV YPEA+ ++P +++LFFL LF+LG+ S
Sbjct: 237 AVFGIVGYLGMTPGV--EGEALGGFVLGFVTYPEAIAQMPGSNFFAVLFFLTLFLLGISS 294
Query: 315 EFALLENVLTSVSDEFLVLRNHKLPF-CICTALVCYVIGLSCVTHGGNYVLTLMDVYGGG 373
FALLE V+T + D R K + V +++ L T G Y+L +D +
Sbjct: 295 AFALLEAVVTLICDSG-WGRKVKRWWIATVVCFVSFLLSLPYCTRFGYYLLDAVDAWISN 353
Query: 374 TAVLFIAIFECVSLVWVYGLKNL 396
A++F+ ECV+ VY +++
Sbjct: 354 VALVFVVWAECVAATTVYRFEDV 376
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 180 bits (460), Expect = 3e-51
Identities = 98/444 (22%), Positives = 186/444 (41%), Gaps = 66/444 (14%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG-LWNCCP--IAKGVGVAMVTVSLIVCIYYNVIMS 57
L+L G P+ E A+G+ G +G P + +G V ++ +Y+VI
Sbjct: 50 FLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGG 109
Query: 58 YTLYYMFSSLQFDVPWSKCDP--EWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKV 115
+ L Y+ SL +P + +
Sbjct: 110 WILSYLVKSLTGALPDTGEQFAQLFGQTI------------------------------- 138
Query: 116 LKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFP--YVILVTLL 173
S+ + + L ++ ++V + KGI+ + K++ P +V+ + L+
Sbjct: 139 ---SNPGLAVIF----HLLFLVLTALIVSRGVKKGIEKANKIM-----MPLLFVLFIILV 186
Query: 174 VTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNN 233
+ + GA+ G+ + P + KL D +VW AA GQ FFSLS+ G +I YSSY ++
Sbjct: 187 IRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGIMITYSSYLSKKSD 246
Query: 234 VYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRL 293
+ AL + +++T+ S+++G+V F L + D +GPGL F+ P ++
Sbjct: 247 LVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLPAVFNQM 298
Query: 294 PFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGL 353
P L+ ILFFL+L L S ++LE ++ ++ D+F + R ++ +++G+
Sbjct: 299 PLGTLFGILFFLLLLFAALTSAISMLEVLVAALIDKFGISRKKAT---WLIGILIFLLGI 355
Query: 354 SCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDL--KFMLKFQPGVY 411
+ G + L+D + A+ + + WV K L + K
Sbjct: 356 PSILSFGLSIFDLVDFVVSNILMPLGALLIAIFVGWVLK-KELLREELNAGSAKL--FKI 412
Query: 412 WRFTWVFCAPVILATIFIYSIIAH 435
W + + AP+++ + I
Sbjct: 413 WLYLVRYIAPIVILVVLILGFYEL 436
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 164 bits (419), Expect = 3e-45
Identities = 111/449 (24%), Positives = 189/449 (42%), Gaps = 71/449 (15%)
Query: 1 MLVLAGKPMYFLELAVGQFGGVGPLG----LWNCCPIAKGVGVAMVTVSLIVCIYYNVIM 56
++L G P+ E A+G+ P+G L K VG V + ++ +Y+V+
Sbjct: 45 FVLLIGLPLLIAEFAIGRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLILSFYSVVG 104
Query: 57 SYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRKVL 116
+ L Y+F SL A V
Sbjct: 105 GWVLAYLFKSLTGSF---------AGADAAEVGAAFFGF--------------------- 134
Query: 117 KLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLLVTG 176
++ + L + L ++ ++V + KGI+ + K++ +V+L+ L +
Sbjct: 135 -IASPLSPLLW----HLLFLLLTALIVARGVKKGIERASKILMPLL---FVLLIILAIRS 186
Query: 177 LLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSNNVYR 236
L GA G+ + P + KL +V AA GQ FFSLS+ MG +I Y SY N+ +
Sbjct: 187 LTLPGAGEGLKFLFKPDFSKL-TPEVVLAALGQAFFSLSLGMGVMITYGSYLPKDENLPK 245
Query: 237 DALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFP 296
AL+V+++DT+ ++++G+V F + A + GPGL F+ P ++P
Sbjct: 246 SALIVAILDTLVALLAGLVIFPAVFAFGLEPA--------AGPGLLFITLPAVFAQMPGG 297
Query: 297 QLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIGLSCV 356
+L+ ILFFL+L L S +LLE + + DEF R + ++ +++G+
Sbjct: 298 RLFGILFFLLLLFAALTSAISLLEVPVAYLIDEFGWSRKKA---TLIVGIIIFLLGIPSA 354
Query: 357 ---------THGGNYVLTLMD----VYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFM 403
T G + L+D L IAIF + WV G + L +L
Sbjct: 355 LSFGVLSDPTIFGKTIFDLLDFLVSNILLPLGGLLIAIF----VGWVLGKEALREELNKG 410
Query: 404 LKFQPGVYWRFTWVFCAPVILATIFIYSI 432
+ WRF + APV++ IF+ +
Sbjct: 411 RGKKLFKIWRFLLRYVAPVLILIIFLLGL 439
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 129 bits (327), Expect = 3e-32
Identities = 103/460 (22%), Positives = 186/460 (40%), Gaps = 67/460 (14%)
Query: 2 LVLAGKPMYFLELAVGQFGG-----VGPLGLWNCC--PIAKGVGVAMVTVSLIVCIYYNV 54
+L G P+ ++E A+G++GG P+ AK +G + L+V YY
Sbjct: 47 FLLVGIPLMWVEWAMGRYGGKHGHGTTPMIFLLAKRNIFAKILGAIGFAIPLLVNSYYVY 106
Query: 55 IMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATRK 114
I S+TL Y F SL P P S++ +
Sbjct: 107 IESWTLGYAFKSLTGGYPEPILRPF-----------AEFFYSYIGAK------------- 142
Query: 115 VLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKV----VYFAATFPYVILV 170
I LA+++ ++ + KGI+ K+ +Y A + ++
Sbjct: 143 ---------PSSFAYIFFLITLALNFFILYRGVSKGIEAFAKIAMPLLYVFAIILAIRVL 193
Query: 171 TLLVTGLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDF 230
TL A+ G+ + P + KL D +VW AAAGQ+FF+LS+ MG +I Y+SY
Sbjct: 194 TLGTPVNPDWTALKGLNFLWNPDFSKLKDPKVWLAAAGQIFFTLSLGMGIIINYASYLR- 252
Query: 231 SNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPI-------NQVVKEGP-GLA 282
D +V+S + + ++ ILG +P V K G GL
Sbjct: 253 ----KDDDIVLSSLTAAS--LNEFAEV-ILGGSI---VIPAAFAFLGAVAVAKAGTFGLG 302
Query: 283 FVAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCI 342
F+A P ++P Q + L+F +LF G+ S A+L+ ++ + +E R H +
Sbjct: 303 FIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIAMLQPLIAFLEEELKWSRKHAALW-- 360
Query: 343 CTALVCYVIGLSCVTHGGNY-VLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLK 401
+ ++GL + L +D + G ++ + + E + W++G K ++
Sbjct: 361 -IFALVIIVGLPVAFEFIDLKALDELDFWVGTILLVVLGLIEVIVFAWIFGAKKGWEEIN 419
Query: 402 FMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYE 441
+ ++++ + P L + ++ I + P Y
Sbjct: 420 RGALIKVPRFFKYVIKYITPAFLIVVLVFFTIDYIPGGYF 459
>gnl|CDD|212031 cd06857, SLC5-6-like_sbd, Solute carrier families 5 and 6-like;
solute binding domain. This superfamily includes the
solute-binding domain of SLC5 proteins (also called the
sodium/glucose cotransporters or solute sodium
symporters), SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporters or
Na+/Cl--dependent transporters), and
nucleobase-cation-symport-1 (NCS1) transporters. SLC5s
co-transport Na+ with sugars, amino acids, inorganic
ions or vitamins. SLC6s include Na+/Cl--dependent plasma
membrane transporters for the monoamine
neurotransmitters serotonin, dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NCS1s are essential components of
salvage pathways for nucleobases and related
metabolites; their known substrates include allantoin,
uracil, thiamine, and nicotinamide riboside. Members of
this superfamily are important in human physiology and
disease. They contain a functional core of 10
transmembrane helices (TMs): an inverted structural
repeat, TMs1-5 and TMs6-10; TMs numbered to conform to
the SLC6 Aquifex aeolicus LeuT.
Length = 413
Score = 40.7 bits (95), Expect = 0.002
Identities = 40/252 (15%), Positives = 77/252 (30%), Gaps = 10/252 (3%)
Query: 167 VILVTLLVTGLLQDGAISGVLYFI-TPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYS 225
V+ V + V+ + +S ++ L + A G +L G +
Sbjct: 153 VMTVYMAVSFIGGFAGVSKMVDAAPGHFEMILNLPGIAVAIGGLWVANLYY-WGFIQYII 211
Query: 226 SYNDFSNNVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPG--LAF 283
+V + + I +V + A + + + P A
Sbjct: 212 QRTLADKSVSEAQKGIVFAAFLMLIAPILVGLIGIAAYVITSDPQLMASLGNLPSAANAD 271
Query: 284 VAYPEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCIC 343
AYP LP L F L + S A+L + T ++ + + +
Sbjct: 272 KAYPWLTQFLPGSVGVKGLVFAALAAAIVSSLAAMLNSTATILTMDI--YKVFTFKTGVI 329
Query: 344 TALVCYVIGLSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDL--- 400
V ++ + G L + +AV +A+ + WV + DL
Sbjct: 330 VTAVVVLLIAALQF-AGVKGLLNTFLNLLTSAVGPLALIMLLDYFWVKRTRISLHDLYRT 388
Query: 401 KFMLKFQPGVYW 412
K + + GV
Sbjct: 389 KGIYTYWRGVSK 400
>gnl|CDD|190075 pfam01706, FliG_C, FliG C-terminal domain. FliG is a component of
the flageller rotor, present in about 25 copies per
flagellum. This domain functions specifically in motor
rotation.
Length = 110
Score = 29.8 bits (68), Expect = 1.3
Identities = 8/34 (23%), Positives = 16/34 (47%), Gaps = 1/34 (2%)
Query: 482 QKFLNAISPTEDWGPALRAKGSSLKQKFLNAISP 515
Q+ L + + AL+ L++K L+ +S
Sbjct: 34 QRLLREV-DKDVLALALKGASEELREKILSNMSK 66
>gnl|CDD|165582 PHA03338, PHA03338, US22 family homolog; Provisional.
Length = 344
Score = 30.3 bits (68), Expect = 2.8
Identities = 14/38 (36%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 334 RNHKLPFCICTALVCYVIGLSCVTHGGNYVLTLMDVYG 371
RN L C C V Y IG + + + LMDV+G
Sbjct: 91 RNRLLQHCCCDVFV-YPIGRAAGLKAADDLDVLMDVFG 127
>gnl|CDD|216852 pfam02028, BCCT, BCCT family transporter.
Length = 484
Score = 29.8 bits (68), Expect = 4.0
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 7/61 (11%)
Query: 253 GIVTFSILGAMAHDL----NVPINQVVKEGPGLAFVAYPEALLRLPFPQLWSILFFLMLF 308
+ FS+ G A DL + V+ GP A A E L P + S+L +++
Sbjct: 346 TFLWFSVFGGTAIDLELNGPGDLADAVEAGPEAALFALLEQL---PLSTILSVLALVLII 402
Query: 309 V 309
+
Sbjct: 403 I 403
>gnl|CDD|180433 PRK06157, PRK06157, acetyl-CoA acetyltransferase; Validated.
Length = 398
Score = 29.2 bits (66), Expect = 5.7
Identities = 11/21 (52%), Positives = 16/21 (76%)
Query: 23 GPLGLWNCCPIAKGVGVAMVT 43
GPLGL++CC ++ G A+VT
Sbjct: 206 GPLGLFDCCGVSDGAAAAIVT 226
>gnl|CDD|182201 PRK10027, PRK10027, cryptic adenine deaminase; Provisional.
Length = 588
Score = 28.6 bits (64), Expect = 9.6
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 259 ILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLRLPFP 296
++G A ++ + +NQV+++G GL V + LP P
Sbjct: 480 VIGRSAEEMALAVNQVIQDGGGLCVVRNGQVQSHLPLP 517
>gnl|CDD|162866 TIGR02460, osmo_MPGsynth, mannosyl-3-phosphoglycerate synthase.
This family consists of examples of
mannosyl-3-phosphoglycerate synthase (MPGS), which
together mannosyl-3-phosphoglycerate phosphatase (MPGP)
comprises a two-step pathway for mannosylglycerate
biosynthesis. Mannosylglycerate is a compatible solute
that tends to be restricted to extreme thermophiles of
archaea and bacteria. Note that in Rhodothermus marinus,
this pathway is one of two; the other is condensation of
GDP-mannose with D-glycerate by mannosylglycerate
synthase.
Length = 381
Score = 28.6 bits (64), Expect = 9.8
Identities = 10/47 (21%), Positives = 21/47 (44%)
Query: 287 PEALLRLPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVL 333
L + +L+ +L + V + + LLE VL+ + E ++
Sbjct: 34 IYTLSNIDREELYDLLGKTAIVVPVKNEKLHLLEGVLSGIPHECPII 80
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.326 0.141 0.455
Gapped
Lambda K H
0.267 0.0699 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,371,874
Number of extensions: 2815019
Number of successful extensions: 3823
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3704
Number of HSP's successfully gapped: 113
Length of query: 550
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 448
Effective length of database: 6,413,494
Effective search space: 2873245312
Effective search space used: 2873245312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.3 bits)