RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15471
         (550 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  236 bits (603), Expect = 7e-72
 Identities = 96/479 (20%), Positives = 173/479 (36%), Gaps = 32/479 (6%)

Query: 1   MLVLAGKPMYFLELAVGQFGGVGPLGLWN-------CCPIAKGVGVAMVTVSLIVCIYYN 53
             +L G P+ ++E A+G++GG    G              AK +GV  + + L+V IYY 
Sbjct: 46  AFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYV 105

Query: 54  VIMSYTLYYMFSSLQFDVPWSKCDPEWADMSTCYVRGVNVSMSHVKSARVVICQVESATR 113
            I S+TL +    L   VP    +    D      +    S   V      I +      
Sbjct: 106 YIESWTLGFAIKFLVGLVPEPPPNATDPDSILRPFKEFLYSYIGVPKGDEPILKPSLFAY 165

Query: 114 KVLKLSDGIENLGPVKTDLAICLAVSWIVVVLCLMKGIKTSGKVVYFAATFPYVILVTLL 173
            V                  I + ++  +++  + KGI+   K+         V LV  +
Sbjct: 166 IVF----------------LITMFINVSILIRGISKGIERFAKIAMPTLFILAVFLVIRV 209

Query: 174 VT-GLLQDGAISGVLYFITPTWEKLLDIQVWHAAAGQMFFSLSVSMGGLIMYSSYNDFSN 232
                    A  G+ +  TP +EKL D  VW AA GQ+FF+LS+  G +I Y+SY     
Sbjct: 210 FLLETPNGTAADGLNFLWTPDFEKLKDPGVWIAAVGQIFFTLSLGFGAIITYASYVRKDQ 269

Query: 233 NVYRDALVVSVMDTITSIMSGIVTFSILGAMAHDLNVPINQVVKEGPGLAFVAYPEALLR 292
           ++    L  + ++    ++ G             +   +         L F+  P    +
Sbjct: 270 DIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLPAIFSQ 329

Query: 293 LPFPQLWSILFFLMLFVLGLDSEFALLENVLTSVSDEFLVLRNHKLPFCICTALVCYVIG 352
                    L+F +LF  GL S  A+++ ++  + DE  + R H + +          + 
Sbjct: 330 TAGGTFLGFLWFFLLFFAGLTSSIAIMQPMIAFLEDELKLSRKHAVLWTAAIVFFSAHLV 389

Query: 353 LSCVTHGGNYVLTLMDVYGGGTAVLFIAIFECVSLVWVYGLKNLCWDLKFMLKFQPGVYW 412
           +       N  L  MD + G   V+F  + E +   W++G      ++      +    +
Sbjct: 390 M-----FLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIY 444

Query: 413 RFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWAD---GVGWCLACLSMCQIPFWA 468
            +   +  P  LA + +     + P   E   +  W      +G  L    +  +    
Sbjct: 445 YYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFLAERR 503


>d1p49a_ c.76.1.2 (A:) Steryl-sulfatase {Human (Homo sapiens)
           [TaxId: 9606]}
          Length = 553

 Score = 27.5 bits (59), Expect = 4.8
 Identities = 11/115 (9%), Positives = 23/115 (20%)

Query: 389 WVYGLKNLCWDLKFMLKFQPGVYWRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDW 448
               L             +         +    V  A                     + 
Sbjct: 234 SYDNLTQRLTVEAAQFIQRNTETPFLLVLSYLHVHTALFSSKDFAGKSQHGVYGDAVEEM 293

Query: 449 ADGVGWCLACLSMCQIPFWALVVVLRAKGSSLKQKFLNAISPTEDWGPALRAKGS 503
              VG  L  L   ++    L+     +G+ +++            G     K +
Sbjct: 294 DWSVGQILNLLDELRLANDTLIYFTSDQGAHVEEVSSKGEIHGGSNGIYKGGKAN 348


>d1wgqa_ b.55.1.1 (A:) FYVE, RhoGEF and PH domain containing protein
           6, Fgd6 (KIAA1362) {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 109

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 10/86 (11%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 412 WRFTWVFCAPVILATIFIYSIIAHKPLHYENYDYPDWADGVGWCLACLSMCQIPFWALVV 471
           W+  W      +L      +      L  +                      +    +  
Sbjct: 24  WKHLWFVIKNKVL--YTYAASEDVAALESQPLLGFTVTLVKDENSESKVFQLLHKGMVFY 81

Query: 472 VLRAKGSSLKQKFLNAISPTEDWGPA 497
           V +A  +   Q++++A       GP+
Sbjct: 82  VFKADDAHSTQRWIDAFQEGTVSGPS 107


>d1e42a1 b.1.10.1 (A:705-824) Beta2-adaptin AP2 ear domain,
           N-terminal subdomain {Human (Homo sapiens) [TaxId:
           9606]}
          Length = 120

 Score = 25.5 bits (56), Expect = 8.7
 Identities = 6/22 (27%), Positives = 10/22 (45%)

Query: 147 LMKGIKTSGKVVYFAATFPYVI 168
           L   +K +  V YF+   P  +
Sbjct: 99  LQVAVKNNIDVFYFSCLIPLNV 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.141    0.455 

Gapped
Lambda     K      H
   0.267   0.0425    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 2,145,464
Number of extensions: 101336
Number of successful extensions: 299
Number of sequences better than 10.0: 1
Number of HSP's gapped: 296
Number of HSP's successfully gapped: 8
Length of query: 550
Length of database: 2,407,596
Length adjustment: 90
Effective length of query: 460
Effective length of database: 1,171,896
Effective search space: 539072160
Effective search space used: 539072160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.7 bits)