Query psy15472
Match_columns 247
No_of_seqs 193 out of 1227
Neff 8.5
Searched_HMMs 46136
Date Fri Aug 16 21:56:15 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15472.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15472hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 100.0 1.9E-36 4.1E-41 284.8 12.9 185 1-247 339-545 (1758)
2 KOG0994|consensus 100.0 6.1E-32 1.3E-36 254.7 12.6 236 1-247 859-1147(1758)
3 KOG1836|consensus 99.9 3.5E-25 7.5E-30 222.8 15.7 214 1-247 731-974 (1705)
4 KOG1836|consensus 99.9 3.2E-23 6.9E-28 208.8 10.1 180 1-246 339-528 (1705)
5 KOG3512|consensus 99.9 1.3E-22 2.9E-27 178.0 10.7 177 1-247 278-479 (592)
6 KOG3512|consensus 99.8 7.2E-20 1.6E-24 160.9 7.6 97 1-97 334-438 (592)
7 KOG4289|consensus 99.5 2.3E-13 5.1E-18 132.3 9.7 133 49-211 1714-1852(2531)
8 cd00055 EGF_Lam Laminin-type e 98.7 2E-08 4.3E-13 63.8 4.9 42 56-97 1-43 (50)
9 smart00180 EGF_Lam Laminin-typ 98.7 2.3E-08 4.9E-13 62.4 4.7 39 57-95 1-40 (46)
10 KOG4289|consensus 98.7 3.8E-08 8.1E-13 97.0 7.1 90 22-132 1737-1832(2531)
11 PF00053 Laminin_EGF: Laminin 98.6 1.7E-08 3.6E-13 63.9 0.6 42 57-98 1-43 (49)
12 KOG1225|consensus 98.5 6.7E-07 1.5E-11 82.5 10.0 100 72-244 264-365 (525)
13 smart00180 EGF_Lam Laminin-typ 98.5 1.9E-07 4.1E-12 58.2 4.4 28 177-204 12-40 (46)
14 cd00055 EGF_Lam Laminin-type e 98.5 2.7E-07 5.8E-12 58.6 4.5 26 181-206 18-43 (50)
15 PF00053 Laminin_EGF: Laminin 98.3 1.7E-07 3.6E-12 59.3 1.1 26 181-206 17-42 (49)
16 KOG1225|consensus 98.0 3.7E-05 8E-10 71.2 9.3 47 180-247 294-342 (525)
17 KOG1388|consensus 97.7 1.6E-05 3.5E-10 64.6 1.9 65 23-90 63-129 (217)
18 KOG1219|consensus 97.6 0.0001 2.3E-09 76.5 6.2 111 52-246 3865-3977(4289)
19 KOG1226|consensus 97.4 0.00059 1.3E-08 64.9 7.9 23 23-47 477-499 (783)
20 KOG4260|consensus 97.3 0.0003 6.5E-09 59.2 3.9 62 24-97 129-192 (350)
21 KOG1226|consensus 97.2 0.00066 1.4E-08 64.6 6.2 15 73-87 478-492 (783)
22 smart00051 DSL delta serrate l 97.0 0.00095 2.1E-08 44.3 3.9 21 224-245 43-63 (63)
23 smart00051 DSL delta serrate l 96.9 0.0012 2.7E-08 43.7 3.7 20 67-86 44-63 (63)
24 KOG1219|consensus 96.8 0.0022 4.8E-08 67.3 6.2 53 22-88 3884-3939(4289)
25 PF12661 hEGF: Human growth fa 96.6 0.00084 1.8E-08 30.2 0.5 13 233-245 1-13 (13)
26 KOG1388|consensus 96.5 0.002 4.4E-08 52.5 2.5 69 53-130 48-118 (217)
27 PF07974 EGF_2: EGF-like domai 96.4 0.0027 5.8E-08 36.1 2.2 21 225-245 12-32 (32)
28 PF12661 hEGF: Human growth fa 96.4 0.0015 3.2E-08 29.4 0.7 13 74-86 1-13 (13)
29 KOG3509|consensus 96.2 0.015 3.3E-07 57.5 7.7 71 23-97 717-793 (964)
30 KOG3509|consensus 96.2 0.0078 1.7E-07 59.5 5.5 87 1-98 754-852 (964)
31 KOG4260|consensus 95.9 0.011 2.3E-07 50.1 4.1 26 181-206 167-192 (350)
32 KOG1218|consensus 95.3 1 2.3E-05 39.0 14.9 17 72-88 48-64 (316)
33 PF07974 EGF_2: EGF-like domai 94.9 0.023 5.1E-07 32.2 2.1 24 59-86 8-32 (32)
34 PF01414 DSL: Delta serrate li 94.4 0.0096 2.1E-07 39.5 -0.2 45 183-245 18-63 (63)
35 KOG1218|consensus 94.2 1.2 2.6E-05 38.6 12.4 58 181-246 238-296 (316)
36 PF01414 DSL: Delta serrate li 93.9 0.0082 1.8E-07 39.8 -1.5 20 67-86 44-63 (63)
37 KOG1217|consensus 93.0 2.2 4.7E-05 38.8 12.6 14 73-86 252-265 (487)
38 PF00008 EGF: EGF-like domain 92.1 0.045 9.8E-07 31.0 0.1 28 58-85 5-32 (32)
39 KOG0196|consensus 88.8 0.49 1.1E-05 46.2 3.9 54 181-241 258-317 (996)
40 PTZ00214 high cysteine membran 88.3 8.7 0.00019 38.3 12.2 17 87-104 618-634 (800)
41 smart00179 EGF_CA Calcium-bind 88.0 0.68 1.5E-05 26.6 2.9 21 226-246 16-39 (39)
42 cd00054 EGF_CA Calcium-binding 87.5 0.73 1.6E-05 26.0 2.8 21 226-246 16-38 (38)
43 KOG1217|consensus 87.2 6.7 0.00015 35.5 10.4 16 73-88 192-207 (487)
44 cd00185 TNFR Tumor necrosis fa 84.5 3.1 6.8E-05 29.8 5.4 23 36-58 33-57 (98)
45 KOG0196|consensus 83.3 1.6 3.5E-05 42.8 4.3 55 72-133 258-318 (996)
46 cd00053 EGF Epidermal growth f 81.6 1.8 3.9E-05 23.8 2.6 16 231-246 20-36 (36)
47 smart00181 EGF Epidermal growt 79.1 2.8 6.1E-05 23.4 2.8 16 71-86 18-34 (35)
48 KOG1214|consensus 73.9 20 0.00044 35.6 8.5 48 40-92 812-866 (1289)
49 PF09064 Tme5_EGF_like: Thromb 64.2 4.9 0.00011 23.0 1.4 17 225-241 10-27 (34)
50 PHA02714 CD-30-like protein; P 63.9 7.9 0.00017 27.7 2.7 42 40-81 23-67 (110)
51 PHA02887 EGF-like protein; Pro 62.4 4.4 9.6E-05 30.1 1.3 17 181-197 107-123 (126)
52 KOG1214|consensus 61.8 6.3 0.00014 39.0 2.5 49 182-243 809-859 (1289)
53 PF03302 VSP: Giardia variant- 59.9 93 0.002 28.4 9.7 14 84-97 37-50 (397)
54 PHA02887 EGF-like protein; Pro 53.9 7.9 0.00017 28.8 1.4 17 231-247 107-123 (126)
55 PF12662 cEGF: Complement Clr- 49.7 11 0.00025 19.7 1.2 10 73-82 2-11 (24)
56 PF07699 GCC2_GCC3: GCC2 and G 44.6 21 0.00046 21.8 2.1 22 37-58 10-32 (48)
57 PF12947 EGF_3: EGF domain; I 42.3 9.1 0.0002 22.1 0.2 13 72-84 20-32 (36)
58 PHA03099 epidermal growth fact 40.0 17 0.00036 27.6 1.3 17 231-247 66-82 (139)
59 cd00064 FU Furin-like repeats. 39.8 33 0.00071 20.8 2.5 25 24-48 15-42 (49)
60 PHA03099 epidermal growth fact 37.2 20 0.00043 27.1 1.3 17 72-88 66-82 (139)
61 PHA02637 TNF-alpha-receptor-li 33.9 66 0.0014 24.3 3.6 24 191-214 61-87 (127)
62 KOG4611|consensus 31.9 56 0.0012 29.4 3.4 22 84-105 98-119 (747)
63 KOG3607|consensus 24.1 63 0.0014 31.9 2.6 27 58-88 631-657 (716)
No 1
>KOG0994|consensus
Probab=100.00 E-value=1.9e-36 Score=284.83 Aligned_cols=185 Identities=39% Similarity=1.063 Sum_probs=169.0
Q ss_pred CCCCCCCCCcccchhhhcccC--CCeeccCCCCCCCCCCCCCCCCCCccCC-----CCCCCcCCCCCCCCCCCc-CC---
Q psy15472 1 CNCNGFSNRCFFDKELYNRTG--HGGHCLDCQGDRDGPNCEKCRDNYYQKS-----GDNFCTACNCNPIGSLNL-QC--- 69 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~--~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~-----~~~~C~~C~C~~~g~~~~-~c--- 69 (247)
|+||+|+.+|+||+.++.++| ++|||.+|+|||+|.+||+|+|.||+++ .+.+|++|.|++.|+... .|
T Consensus 339 C~CNgHa~sCHFD~aV~~ASG~vSGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~ 418 (1758)
T KOG0994|consen 339 CECNGHADTCHFDMAVYEASGNVSGGVCDDCQHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSF 418 (1758)
T ss_pred cCCCCCcccccccHHHHhhcCCcccccCccccccccccchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccc
Confidence 789999999999999999998 7999999999999999999999999986 578999999999998753 44
Q ss_pred -CC-C----ceeeCCCCCcCCCCCCCCCCcccCC---CCCcccccCCCCCCCCCCCCCcCCCCceeccCCCCCCccceee
Q psy15472 70 -NS-E----GRCQCKPGVTGDKCDRCDVNHYDFG---EAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTEL 140 (247)
Q Consensus 70 -~~-~----g~C~C~~g~~G~~C~~C~~G~~g~~---~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~~~~ 140 (247)
+. + |+|.||+++.|.+|++|.+||||+. ..+|++|.|++.|++.+++ ||+.||
T Consensus 419 ~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gywgl~~~dp~GC~~C~CN~lGT~~~s~-CD~~TG----------------- 480 (1758)
T KOG0994|consen 419 CDPSTGLVAGQCRCKEHVAGRRCDRCKDGYWGLTSADPYGCRPCDCNPLGTRNGSG-CDPETG----------------- 480 (1758)
T ss_pred cCccccccccccccccCcCccccchhccCcccCccCCCCCccccccccccccCCCC-CCCCCC-----------------
Confidence 32 3 9999999999999999999999987 4689999999999988764 888887
Q ss_pred eeccccCcCCCCCccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCcccCC--CCCCccCCCCCC
Q psy15472 141 RVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFG--EAGCKSCECNPA 218 (247)
Q Consensus 141 ~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~~g~~--~~~C~~C~C~~~ 218 (247)
.|.|++-++|..|++|.|.|||++ ..+|.+|.|+.+
T Consensus 481 ------------------------------------------~C~ckrlvTg~~cdqclPeh~gLs~~~~gc~~cdcd~G 518 (1758)
T KOG0994|consen 481 ------------------------------------------DCYCKRLVTGIDCDQCLPEHWGLSNDLEGCRPCDCDQG 518 (1758)
T ss_pred ------------------------------------------ceEeeccccCCCccccCccccccCCCCCCCcccccCCC
Confidence 788889999999999999999998 789999999999
Q ss_pred CCCCCCCCCCCCCCeeeCCCCCCCCCCCC
Q psy15472 219 GSVKNTPNCDSVKGQCECKDNVEGAQCRS 247 (247)
Q Consensus 219 g~~~~~~~C~~~tG~C~C~~g~~G~~C~~ 247 (247)
|+. ..+|+..+|+|.|+++|.|++|++
T Consensus 519 Gs~--d~sc~~~sGqC~CRe~~~GR~c~~ 545 (1758)
T KOG0994|consen 519 GSY--DNSCDLHSGQCECREHMLGRRCEQ 545 (1758)
T ss_pred CCC--CcccccccCccccccccccccccc
Confidence 998 567999999999999999999974
No 2
>KOG0994|consensus
Probab=99.97 E-value=6.1e-32 Score=254.66 Aligned_cols=236 Identities=30% Similarity=0.735 Sum_probs=179.1
Q ss_pred CCCCCCCCCcccchhhhcccCCCeeccCCCCCCCCCCCCCCCCCCccCC---CCCCCcCCCCCCCCCCC----cCCC---
Q psy15472 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKS---GDNFCTACNCNPIGSLN----LQCN--- 70 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~---~~~~C~~C~C~~~g~~~----~~c~--- 70 (247)
|+||+|+..|.. ++|.|++|++.|+|.+||+|..||||++ ...-|+||+|...-... ..|.
T Consensus 859 CqCNgHA~~Cd~---------~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~gp~Sg~~~A~sC~~d~ 929 (1758)
T KOG0994|consen 859 CQCNGHADTCDP---------ITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDGPASGRQHADSCYLDT 929 (1758)
T ss_pred ccccCcccccCc---------cccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCCCccchhccccccccc
Confidence 789999999954 3899999999999999999999999997 45679999997543221 2232
Q ss_pred --CCceeeCCCCCcCCCCCCCCCCcccCC--CCCcccccCCCCCCCCCCCCCcCCCCceeccCCCCCCccceeeeecc--
Q psy15472 71 --SEGRCQCKPGVTGDKCDRCDVNHYDFG--EAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQS-- 144 (247)
Q Consensus 71 --~~g~C~C~~g~~G~~C~~C~~G~~g~~--~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~~~~~~~~-- 144 (247)
..-.|.|++||+|.+|+.|+++|||.| ...|++|+|+++...-....||+.||+|+-.-....|..+..++..+
T Consensus 930 ~t~~ivC~C~~GY~G~RCe~CA~~~fGnP~~GGtCq~CeC~~NiD~~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~G 1009 (1758)
T KOG0994|consen 930 RTQQIVCHCQEGYSGSRCEICADNHFGNPSEGGTCQKCECSNNIDLYDPGACDVATGACLKCLYHTEGDHCEHCKDGFYG 1009 (1758)
T ss_pred cccceeeecccCccccchhhhcccccCCcccCCccccccccCCcCccCCCccchhhchhhhhhhcccccchhhccccchh
Confidence 157899999999999999999999998 34699999999876666677999999986433222222222111100
Q ss_pred ----------ccCcCC-----------------CCCccccCCCCCCCCCCCCCC---------CCCCccCCC-CccccCC
Q psy15472 145 ----------RKNFDP-----------------AGNRIWDLRRCKRDTYPLGHG---------GSLNLQCNS-EGRCQCK 187 (247)
Q Consensus 145 ----------~~~~~~-----------------~~~~~~~~~~C~~~~~~~~~~---------~~~~~~C~~-~G~C~C~ 187 (247)
..||.- +.--+..+.+|.+++|.+..+ -...++|+. +|||+|+
T Consensus 1010 dA~~q~CqrC~Cn~LGTn~~~~CDr~tGQCpClpNv~G~~CDqCA~N~w~laSG~GCe~C~Cd~~~~pqCN~ftGQCqCk 1089 (1758)
T KOG0994|consen 1010 DALRQNCQRCVCNFLGTNSTCHCDRFTGQCPCLPNVQGVRCDQCAENHWNLASGEGCEPCNCDPIGGPQCNEFTGQCQCK 1089 (1758)
T ss_pred HHHHhhhhhheccccccCCccccccccCcCCCCcccccccccccccchhccccCCCCCccCCCccCCccccccccceecc
Confidence 001100 001223455677777655432 122356775 9999999
Q ss_pred CCcccCCCCCCCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCCeeeCCCCCCCCCCCC
Q psy15472 188 PGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCRS 247 (247)
Q Consensus 188 ~g~~G~~C~~C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~ 247 (247)
|||.|+.|++|...|||.+...|+.|.|++.|+. +..||..||+|+|++|+.|.+|++
T Consensus 1090 pGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~--tpQCdr~tG~C~C~~Gv~G~rCdq 1147 (1758)
T KOG0994|consen 1090 PGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIE--TPQCDRATGRCVCRPGVGGPRCDQ 1147 (1758)
T ss_pred CCCCCcchhHHHHhhcCCCCCCceecCCCCCCCC--CCCccccCCceeecCCCCCcchhh
Confidence 9999999999999999999889999999999986 788999999999999999999974
No 3
>KOG1836|consensus
Probab=99.93 E-value=3.5e-25 Score=222.78 Aligned_cols=214 Identities=33% Similarity=0.789 Sum_probs=174.3
Q ss_pred CCCCCCCCCcccchhhhcccCCCeeccCCCCCCCCCCCCCCCCCCccCCC---CCCCcCCCCCCCCCCCcCCCC-Cceee
Q psy15472 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSG---DNFCTACNCNPIGSLNLQCNS-EGRCQ 76 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~~---~~~C~~C~C~~~g~~~~~c~~-~g~C~ 76 (247)
|.||+|+..|. ++ +|.|. |.+++.|.+|++|.+||||.+. ..+|++|+|+..++.....+. .+.|.
T Consensus 731 C~cngh~~~Cd--~~-------tG~C~-C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk 800 (1705)
T KOG1836|consen 731 CDCNGHSNICD--PR-------TGQCK-CKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCK 800 (1705)
T ss_pred cccCCcccccc--CC-------CCcee-cccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecC
Confidence 67899999995 43 99995 9999999999999999999873 344999999988877777755 89999
Q ss_pred -CCCCCcCCCCCCCCCCcccCC--C----CCcccccCCCCCCCCCCCCCcCCCCceeccCCCCCCccceeeeeccccCcC
Q psy15472 77 -CKPGVTGDKCDRCDVNHYDFG--E----AGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFD 149 (247)
Q Consensus 77 -C~~g~~G~~C~~C~~G~~g~~--~----~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~~~~~~~~~~~~~ 149 (247)
|+++|+|.+|+.|..|||+.+ . ..|++|+|+.+........|+..+|+|+-+-.+..+
T Consensus 801 ~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g--------------- 865 (1705)
T KOG1836|consen 801 NCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAG--------------- 865 (1705)
T ss_pred CCCCCCcccccccCCCccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCccc---------------
Confidence 999999999999999999987 2 369999999887665556799999999544333333
Q ss_pred CCCCccccCCCCCCCCCCCCC---------------CCCC--CccCCC-CccccCCCCcccCCCCCCCCCcccCC-CCCC
Q psy15472 150 PAGNRIWDLRRCKRDTYPLGH---------------GGSL--NLQCNS-EGRCQCKPGVTGDKCDRCDVNHYDFG-EAGC 210 (247)
Q Consensus 150 ~~~~~~~~~~~C~~~~~~~~~---------------~~~~--~~~C~~-~G~C~C~~g~~G~~C~~C~~g~~g~~-~~~C 210 (247)
+.+..|.+++|+... .++. ..+|+. +|+|.|++++.|..|.+|.+|+|++. ..+|
T Consensus 866 ------~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC 939 (1705)
T KOG1836|consen 866 ------EYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGC 939 (1705)
T ss_pred ------ccccccccCccccccCCCcCCccccccCccCCcccccccCCCcccceeccCCCCccccccccccccccCCCCCc
Confidence 334444444443211 1222 356884 99999999999999999999999998 7799
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCeeeCCCCCCCCCCCC
Q psy15472 211 KSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCRS 247 (247)
Q Consensus 211 ~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~ 247 (247)
.+|.|+..|++ ...|+..||+|.|+++++|.+|++
T Consensus 940 ~~c~c~~~gs~--~~~c~~~tGqc~c~~gVtgqrc~q 974 (1705)
T KOG1836|consen 940 EPCNCDPTGSE--SSDCDVGTGQCYCRPGVTGQRCDQ 974 (1705)
T ss_pred ccccccccccc--cccccccCCceeeecCccccccCc
Confidence 99999999998 348999999999999999999975
No 4
>KOG1836|consensus
Probab=99.89 E-value=3.2e-23 Score=208.78 Aligned_cols=180 Identities=47% Similarity=1.081 Sum_probs=155.9
Q ss_pred CCCCCCCCCcccchhhhcccCCCeeccCCCCCCCCCCCCCCCCCCccCC---CCCCCcCCCCCCCCCCCcCCCCCceeeC
Q psy15472 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKS---GDNFCTACNCNPIGSLNLQCNSEGRCQC 77 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~---~~~~C~~C~C~~~g~~~~~c~~~g~C~C 77 (247)
|+|++||..|.||+++...++++|+|++|+.|++|.+||+|..+||+.. .+..|.+|.|++.++.+..++..|+|.|
T Consensus 339 cnc~g~S~ec~~d~~l~r~~~~gg~c~~c~entag~~CerC~~~f~R~~~~~~~~~c~~C~c~~~gsl~~~~~~~g~c~c 418 (1705)
T KOG1836|consen 339 CNCNGRSEECYFDRELDRRTGGGGHCLDCRENTAGVHCERCLLGFYRSRQVTEPNPCRPCICNSAGSLSAQCDDTGRCQC 418 (1705)
T ss_pred ccCCCchHhhhhcHHHHHhhcCCccccCccccccCcchhhccccccccCCCCCCCcCcccCCCCccchhhhhccCCccee
Confidence 6899999999999999999999999999999999999999999999987 7889999999999999999999999999
Q ss_pred CCCCcCCCCCCCCCCcccCCCCCccc----ccCCCCCCCCCCCCCcCCCCceeccCCCCCCccceeeeeccccCcCCCCC
Q psy15472 78 KPGVTGDKCDRCDVNHYDFGEAGCKS----CECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFDPAGN 153 (247)
Q Consensus 78 ~~g~~G~~C~~C~~G~~g~~~~~C~~----C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~~~~~~~~~~~~~~~~~ 153 (247)
+|+++|.+|++|++||++++...|+. |+|.+.++..+ |+
T Consensus 419 ~P~v~g~~cD~ca~g~~~~~~~~~~~~~~~~~~~~~g~~~~---c~---------------------------------- 461 (1705)
T KOG1836|consen 419 KPGVTGQKCDRCAPGFYGLPACGCQLNQVSCQCLPAGSLDN---CD---------------------------------- 461 (1705)
T ss_pred cccccccccCccCcccccCccccccccccccccccccCccc---cC----------------------------------
Confidence 99999999999999999998555554 45554443321 22
Q ss_pred ccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCcccCC---CCCCccCCCCCCCCCCCCCCCCCC
Q psy15472 154 RIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFG---EAGCKSCECNPAGSVKNTPNCDSV 230 (247)
Q Consensus 154 ~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~~g~~---~~~C~~C~C~~~g~~~~~~~C~~~ 230 (247)
.|.|.||++++|.+|++|++|||.+. ..+|.+|.|..++..+ ..++..
T Consensus 462 ---------------------------~g~c~cK~nveg~~ce~ckpgyfnl~~~n~~gc~~C~c~g~s~~c--~~~~~~ 512 (1705)
T KOG1836|consen 462 ---------------------------SGRCLCKENVEGTRCERCKPGYFNLEAENPLGCTPCFCSGHSSEC--DSADGY 512 (1705)
T ss_pred ---------------------------CceeeeccCccceeccccCCcccccCcCCCCCCccceeecccccc--ccccCc
Confidence 34899999999999999999999885 6799999999987763 345667
Q ss_pred CCeeeCCCCCCCCCCC
Q psy15472 231 KGQCECKDNVEGAQCR 246 (247)
Q Consensus 231 tG~C~C~~g~~G~~C~ 246 (247)
+|++.....|.+.+++
T Consensus 513 t~~~~~~s~f~~~s~~ 528 (1705)
T KOG1836|consen 513 TGVCVILSNFHQDSCG 528 (1705)
T ss_pred ceeEEEeccccccccc
Confidence 7889999999887764
No 5
>KOG3512|consensus
Probab=99.88 E-value=1.3e-22 Score=177.98 Aligned_cols=177 Identities=32% Similarity=0.790 Sum_probs=132.5
Q ss_pred CCCCCCCCCcccchhhhcccCCCeeccCCCCCCCCCCCCCCCCCCccCC-------CCCCCcCCCCCCCCCCC---cCCC
Q psy15472 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKS-------GDNFCTACNCNPIGSLN---LQCN 70 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~-------~~~~C~~C~C~~~g~~~---~~c~ 70 (247)
|+||+|+.+|++|.. +...| +|+|||+|+.|++|+|.||+.+ ..+.|.+|.|+.++..- ..+-
T Consensus 278 CKCNgHAs~Cv~d~~------~~ltC-dC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely 350 (592)
T KOG3512|consen 278 CKCNGHASRCVMDES------SHLTC-DCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELY 350 (592)
T ss_pred eeecCccceeeeccC------CceEE-ecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhh
Confidence 789999999998753 35889 7999999999999999998765 46899999999887621 1111
Q ss_pred ------CCceee-CCCCCcCCCCCCCCCCcccCC------CCCcccccCCCCCCCCCCCCCcCCCCceeccCCCCCCccc
Q psy15472 71 ------SEGRCQ-CKPGVTGDKCDRCDVNHYDFG------EAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVH 137 (247)
Q Consensus 71 ------~~g~C~-C~~g~~G~~C~~C~~G~~g~~------~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~ 137 (247)
..|+|. |+.+++|++|..|.+|||... ...|+.|+|++.|+...+ |+..||
T Consensus 351 ~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gkt--CNq~tG-------------- 414 (592)
T KOG3512|consen 351 RLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKT--CNQTTG-------------- 414 (592)
T ss_pred cccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCccccccccc--ccccCC--------------
Confidence 257898 999999999999999999875 346999999998876543 666555
Q ss_pred eeeeeccccCcCCCCCccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCcccCCC--CCCccCCC
Q psy15472 138 TELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGE--AGCKSCEC 215 (247)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~~g~~~--~~C~~C~C 215 (247)
||.|++|++|..|+.|++||+.... -.|..++=
T Consensus 415 ---------------------------------------------qCpCkeGvtG~tCnrCa~gyqqsrs~vapcik~p~ 449 (592)
T KOG3512|consen 415 ---------------------------------------------QCPCKEGVTGLTCNRCAPGYQQSRSPVAPCIKIPT 449 (592)
T ss_pred ---------------------------------------------cccCCCCCcccccccccchhhcccCCCcCceecCC
Confidence 9999999999999999999987652 33444332
Q ss_pred CCCCCCCCCCCCCCCCCeeeCCCCCCCCCCCC
Q psy15472 216 NPAGSVKNTPNCDSVKGQCECKDNVEGAQCRS 247 (247)
Q Consensus 216 ~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~ 247 (247)
+. -++..+.. .+.+-.+.|+++..|.++++
T Consensus 450 ~~-~~~~~s~v-e~qd~~s~Ck~~~~~~r~n~ 479 (592)
T KOG3512|consen 450 DA-PTLGSSGV-EPQDQCSKCKASPGGKRLNQ 479 (592)
T ss_pred CC-ccccCCCC-cchhccccCCCCCcceeccc
Confidence 21 12111111 12222348999999988764
No 6
>KOG3512|consensus
Probab=99.80 E-value=7.2e-20 Score=160.91 Aligned_cols=97 Identities=44% Similarity=1.086 Sum_probs=91.2
Q ss_pred CCCCCCCCCcccchhhhcccC--CCeeccCCCCCCCCCCCCCCCCCCccCC-----CCCCCcCCCCCCCCCCCcCCCC-C
Q psy15472 1 CNCNGFSNRCFFDKELYNRTG--HGGHCLDCQGDRDGPNCEKCRDNYYQKS-----GDNFCTACNCNPIGSLNLQCNS-E 72 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~--~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~-----~~~~C~~C~C~~~g~~~~~c~~-~ 72 (247)
|+||+|+.+|.+++|+|..+| ++|+|++|+|||.|.+|+.|++|||++. ..++|+.|.||++|+.+..|++ +
T Consensus 334 c~Cn~harrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~t 413 (592)
T KOG3512|consen 334 CNCNGHARRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTT 413 (592)
T ss_pred cccchhhhhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccC
Confidence 689999999999999999998 7999999999999999999999999986 3678999999999999999997 9
Q ss_pred ceeeCCCCCcCCCCCCCCCCcccCC
Q psy15472 73 GRCQCKPGVTGDKCDRCDVNHYDFG 97 (247)
Q Consensus 73 g~C~C~~g~~G~~C~~C~~G~~g~~ 97 (247)
|+|.|++|++|..|++|++||+-..
T Consensus 414 GqCpCkeGvtG~tCnrCa~gyqqsr 438 (592)
T KOG3512|consen 414 GQCPCKEGVTGLTCNRCAPGYQQSR 438 (592)
T ss_pred CcccCCCCCcccccccccchhhccc
Confidence 9999999999999999999998543
No 7
>KOG4289|consensus
Probab=99.46 E-value=2.3e-13 Score=132.29 Aligned_cols=133 Identities=31% Similarity=0.774 Sum_probs=100.4
Q ss_pred CCCCCCcCCCCCCCCCCCcCCC-CCceeeCCCCCcCCCCC-----CCCCCcccCCCCCcccccCCCCCCCCCCCCCcCCC
Q psy15472 49 SGDNFCTACNCNPIGSLNLQCN-SEGRCQCKPGVTGDKCD-----RCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVK 122 (247)
Q Consensus 49 ~~~~~C~~C~C~~~g~~~~~c~-~~g~C~C~~g~~G~~C~-----~C~~G~~g~~~~~C~~C~C~~~g~~~~~~~C~~~t 122 (247)
.+.+.|..-+|.+.|+....-. +.+.|.|++|++|.+|+ .|+.||||+| .|.||+|.....+. +.|+..+
T Consensus 1714 ~C~~vC~lnpc~~~g~Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~P--~CgpC~CavsKgfd--p~CnKt~ 1789 (2531)
T KOG4289|consen 1714 NCVDVCSLNPCENQGTCVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGWWGFP--TCGPCNCAVSKGFD--PDCNKTN 1789 (2531)
T ss_pred CccchhcccccccCceeecCCCCCceeEECCCcccCcchhhhccCCCCCcccCCC--CccCccccccCCCC--CCccccC
Confidence 4667777767766664322111 47899999999999997 6999999987 79999998876554 5699999
Q ss_pred CceeccCCCCCCccceeeeeccccCcCCCCCccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCc
Q psy15472 123 GQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNH 202 (247)
Q Consensus 123 G~C~c~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~ 202 (247)
|+|+|+...+. +.+ .+.+|++. .|+.+..|+.+|+|.|++|..|++|++|.+-|
T Consensus 1790 G~CqCKe~hy~----------------~~~----~Cl~CdC~------~Gs~Sr~C~adGqC~C~pgaiGRqCdrCd~pf 1843 (2531)
T KOG4289|consen 1790 GQCQCKENHYR----------------PIG----SCLPCDCY------FGSDSRECDADGQCPCKPGAIGRQCDRCDNPF 1843 (2531)
T ss_pred cceeecccccc----------------CCC----cceeeccc------cCCCcccccCCCcCCCCCccccccccccCChh
Confidence 99999986432 112 25556554 36777889999999999999999999998766
Q ss_pred ccCCCCCCc
Q psy15472 203 YDFGEAGCK 211 (247)
Q Consensus 203 ~g~~~~~C~ 211 (247)
......+|.
T Consensus 1844 aevttlgCr 1852 (2531)
T KOG4289|consen 1844 AEVTTLGCR 1852 (2531)
T ss_pred hhccccCcE
Confidence 655544554
No 8
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.74 E-value=2e-08 Score=63.84 Aligned_cols=42 Identities=48% Similarity=1.140 Sum_probs=38.5
Q ss_pred CCCCCCCCCCCcCCCC-CceeeCCCCCcCCCCCCCCCCcccCC
Q psy15472 56 ACNCNPIGSLNLQCNS-EGRCQCKPGVTGDKCDRCDVNHYDFG 97 (247)
Q Consensus 56 ~C~C~~~g~~~~~c~~-~g~C~C~~g~~G~~C~~C~~G~~g~~ 97 (247)
+|.|+++++++..|+. +|+|.|+++|+|++|++|++|||+++
T Consensus 1 ~C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 1 PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCC
Confidence 4788888888888988 89999999999999999999999986
No 9
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.72 E-value=2.3e-08 Score=62.38 Aligned_cols=39 Identities=49% Similarity=1.228 Sum_probs=35.0
Q ss_pred CCCCCCCCCCcCCCC-CceeeCCCCCcCCCCCCCCCCccc
Q psy15472 57 CNCNPIGSLNLQCNS-EGRCQCKPGVTGDKCDRCDVNHYD 95 (247)
Q Consensus 57 C~C~~~g~~~~~c~~-~g~C~C~~g~~G~~C~~C~~G~~g 95 (247)
|.|++.|++...|+. +|+|.|+++|+|++|++|++|||+
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 567777777678887 899999999999999999999998
No 10
>KOG4289|consensus
Probab=98.68 E-value=3.8e-08 Score=97.03 Aligned_cols=90 Identities=33% Similarity=0.805 Sum_probs=72.9
Q ss_pred CCeeccCCCCCCCCCCCCC-----CCCCCccCCCCCCCcCCCCCCCCCCCcCCCC-CceeeCCCCCcCCCCCCCCCCccc
Q psy15472 22 HGGHCLDCQGDRDGPNCEK-----CRDNYYQKSGDNFCTACNCNPIGSLNLQCNS-EGRCQCKPGVTGDKCDRCDVNHYD 95 (247)
Q Consensus 22 ~~g~C~~C~~~~~G~~Ce~-----C~~Gy~g~~~~~~C~~C~C~~~g~~~~~c~~-~g~C~C~~g~~G~~C~~C~~G~~g 95 (247)
++++| .|.++++|++||. |+.||||. ..|.+|.|...-.....|+. +|+|+||..+. .
T Consensus 1737 ~GY~C-~C~~g~~G~~Ce~~~dq~CPrGWWG~---P~CgpC~CavsKgfdp~CnKt~G~CqCKe~hy------------~ 1800 (2531)
T KOG4289|consen 1737 HGYTC-ECPPGYTGPYCELRADQPCPRGWWGF---PTCGPCNCAVSKGFDPDCNKTNGQCQCKENHY------------R 1800 (2531)
T ss_pred CceeE-ECCCcccCcchhhhccCCCCCcccCC---CCccCccccccCCCCCCccccCcceeeccccc------------c
Confidence 68999 6999999999984 99999996 48999999866555667887 89999987543 3
Q ss_pred CCCCCcccccCCCCCCCCCCCCCcCCCCceeccCCCC
Q psy15472 96 FGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSS 132 (247)
Q Consensus 96 ~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~ 132 (247)
. ..+|.+|+|. .|+.+. .|+ .+|||.|+++..
T Consensus 1801 ~-~~~Cl~CdC~-~Gs~Sr--~C~-adGqC~C~pgai 1832 (2531)
T KOG4289|consen 1801 P-IGSCLPCDCY-FGSDSR--ECD-ADGQCPCKPGAI 1832 (2531)
T ss_pred C-CCcceeeccc-cCCCcc--ccc-CCCcCCCCCccc
Confidence 2 3359999999 676554 499 899999998754
No 11
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.56 E-value=1.7e-08 Score=63.91 Aligned_cols=42 Identities=43% Similarity=1.145 Sum_probs=35.1
Q ss_pred CCCCCCCCCCcCCCC-CceeeCCCCCcCCCCCCCCCCcccCCC
Q psy15472 57 CNCNPIGSLNLQCNS-EGRCQCKPGVTGDKCDRCDVNHYDFGE 98 (247)
Q Consensus 57 C~C~~~g~~~~~c~~-~g~C~C~~g~~G~~C~~C~~G~~g~~~ 98 (247)
|.|+++++....|+. +|+|.|+++|+|++|++|+++||+++.
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 467788877778887 999999999999999999999999873
No 12
>KOG1225|consensus
Probab=98.51 E-value=6.7e-07 Score=82.45 Aligned_cols=100 Identities=42% Similarity=0.971 Sum_probs=62.6
Q ss_pred CceeeCCCCCcCCCCCC--CCCCcccCCCCCcccccCCCCCCCCCCCCCcCCCCceeccCCCCCCccceeeeeccccCcC
Q psy15472 72 EGRCQCKPGVTGDKCDR--CDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFD 149 (247)
Q Consensus 72 ~g~C~C~~g~~G~~C~~--C~~G~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~g~~~~~~~~~~~~~~~ 149 (247)
.|+|+|++||+|..|++ |+. .|+.++- + +.|+|+|++++++-.+..
T Consensus 264 ~G~CIC~~Gf~G~dC~e~~Cp~-------------~cs~~g~------~--~~g~CiC~~g~~G~dCs~----------- 311 (525)
T KOG1225|consen 264 EGRCICPPGFTGDDCDELVCPV-------------DCSGGGV------C--VDGECICNPGYSGKDCSI----------- 311 (525)
T ss_pred CCeEeCCCCCcCCCCCcccCCc-------------ccCCCce------e--cCCEeecCCCcccccccc-----------
Confidence 69999999999999986 332 1333321 1 467999988754322110
Q ss_pred CCCCccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCCCCCCCCCCCC
Q psy15472 150 PAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDS 229 (247)
Q Consensus 150 ~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~ 229 (247)
++|+.+.. -...|. +|+|.|.+||+|..|++= .|.+++. |
T Consensus 312 ---------~~cpadC~-------g~G~Ci-~G~C~C~~Gy~G~~C~~~---------------~C~~~g~------c-- 351 (525)
T KOG1225|consen 312 ---------RRCPADCS-------GHGKCI-DGECLCDEGYTGELCIQR---------------ACSGGGQ------C-- 351 (525)
T ss_pred ---------ccCCccCC-------CCCccc-CCceEeCCCCcCCccccc---------------ccCCCce------e--
Confidence 12332221 123444 789999999999999651 2555433 3
Q ss_pred CCCeeeCCCCCCCCC
Q psy15472 230 VKGQCECKDNVEGAQ 244 (247)
Q Consensus 230 ~tG~C~C~~g~~G~~ 244 (247)
+.| |.|+.||.|+.
T Consensus 352 v~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 352 VNG-CKCKKGWRGPD 365 (525)
T ss_pred ccC-ceeccCccCCC
Confidence 457 88888888865
No 13
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.50 E-value=1.9e-07 Score=58.19 Aligned_cols=28 Identities=50% Similarity=1.299 Sum_probs=24.4
Q ss_pred cCCC-CccccCCCCcccCCCCCCCCCccc
Q psy15472 177 QCNS-EGRCQCKPGVTGDKCDRCDVNHYD 204 (247)
Q Consensus 177 ~C~~-~G~C~C~~g~~G~~C~~C~~g~~g 204 (247)
.|+. +|+|.|+++|+|++||+|+++||+
T Consensus 12 ~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 12 TCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred cccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 3443 569999999999999999999999
No 14
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.47 E-value=2.7e-07 Score=58.58 Aligned_cols=26 Identities=46% Similarity=1.181 Sum_probs=24.3
Q ss_pred CccccCCCCcccCCCCCCCCCcccCC
Q psy15472 181 EGRCQCKPGVTGDKCDRCDVNHYDFG 206 (247)
Q Consensus 181 ~G~C~C~~g~~G~~C~~C~~g~~g~~ 206 (247)
+|+|.|+++|+|++|++|+++||+++
T Consensus 18 ~G~C~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 18 TGQCECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCEEeCCCcCCCCCCCCCCCCCccCC
Confidence 55999999999999999999999987
No 15
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.33 E-value=1.7e-07 Score=59.28 Aligned_cols=26 Identities=42% Similarity=1.149 Sum_probs=22.6
Q ss_pred CccccCCCCcccCCCCCCCCCcccCC
Q psy15472 181 EGRCQCKPGVTGDKCDRCDVNHYDFG 206 (247)
Q Consensus 181 ~G~C~C~~g~~G~~C~~C~~g~~g~~ 206 (247)
+|+|.|+++|+|++||+|+++||+++
T Consensus 17 ~G~C~C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 17 TGQCVCKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp CEEESBSTTEESTTS-EE-TTEECST
T ss_pred CCEEeccccccCCcCcCCCCcccccc
Confidence 56999999999999999999999997
No 16
>KOG1225|consensus
Probab=97.99 E-value=3.7e-05 Score=71.15 Aligned_cols=47 Identities=34% Similarity=1.043 Sum_probs=37.1
Q ss_pred CCccccCCCCcccCCCCC--CCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCCeeeCCCCCCCCCCCC
Q psy15472 180 SEGRCQCKPGVTGDKCDR--CDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCRS 247 (247)
Q Consensus 180 ~~G~C~C~~g~~G~~C~~--C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~~ 247 (247)
.+|+|+|+++|+|..|+. |+ =+|.++| .|. +|+|.|.+||+|..|++
T Consensus 294 ~~g~CiC~~g~~G~dCs~~~cp-------------adC~g~G------~Ci--~G~C~C~~Gy~G~~C~~ 342 (525)
T KOG1225|consen 294 VDGECICNPGYSGKDCSIRRCP-------------ADCSGHG------KCI--DGECLCDEGYTGELCIQ 342 (525)
T ss_pred cCCEeecCCCccccccccccCC-------------ccCCCCC------ccc--CCceEeCCCCcCCcccc
Confidence 467999999999999964 32 1366654 576 89999999999999964
No 17
>KOG1388|consensus
Probab=97.71 E-value=1.6e-05 Score=64.59 Aligned_cols=65 Identities=35% Similarity=0.964 Sum_probs=53.2
Q ss_pred CeeccCCCCCCCCCCCCCCCCCCccCCCCCCCcCCCCCCCCCCCcCCCC-CceeeC-CCCCcCCCCCCCC
Q psy15472 23 GGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNS-EGRCQC-KPGVTGDKCDRCD 90 (247)
Q Consensus 23 ~g~C~~C~~~~~G~~Ce~C~~Gy~g~~~~~~C~~C~C~~~g~~~~~c~~-~g~C~C-~~g~~G~~C~~C~ 90 (247)
.-+|-+|..+++|.+|++|..||||+.....|.++.|+.... .+.. +++|.| ..++.|..|++|.
T Consensus 63 ~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~~---~~~~~~~~c~c~~kgvvgd~c~~~e 129 (217)
T KOG1388|consen 63 QHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGAS---ACVTLTGKCFCTTKGVVGDLCPKCE 129 (217)
T ss_pred ceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCee---eeeccCCccccccceEecccCcccc
Confidence 456667999999999999999999986677899999986543 2333 899999 5799999998764
No 18
>KOG1219|consensus
Probab=97.61 E-value=0.0001 Score=76.50 Aligned_cols=111 Identities=24% Similarity=0.616 Sum_probs=79.2
Q ss_pred CCCcCCCCCCCCCCCcCCCCCceeeCCCCCcCCCCCCCCCCcccCCCCCcccccCCCCCCCCCCCCCcCCCCceeccCCC
Q psy15472 52 NFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLS 131 (247)
Q Consensus 52 ~~C~~C~C~~~g~~~~~c~~~g~C~C~~g~~G~~C~~C~~G~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~ 131 (247)
+.|..-+|.+.|++..+-...++|.|++-|.|.+||.= ...|.+-+|...|+ |.+..+
T Consensus 3865 d~C~~npCqhgG~C~~~~~ggy~CkCpsqysG~~CEi~--------~epC~snPC~~Ggt------Cip~~n-------- 3922 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGTCISQPKGGYKCKCPSQYSGNHCEID--------LEPCASNPCLTGGT------CIPFYN-------- 3922 (4289)
T ss_pred cccccCcccCCCEecCCCCCceEEeCcccccCcccccc--------cccccCCCCCCCCE------EEecCC--------
Confidence 56766778887766555445899999999999999851 22455555555442 554432
Q ss_pred CCCccceeeeeccccCcCCCCCccccCCCCCCCCCCCCCCCCCCccCCCCccccCCCCcccCCCCCCCCCcccCCCCCCc
Q psy15472 132 SRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCK 211 (247)
Q Consensus 132 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~C~~~G~C~C~~g~~G~~C~~C~~g~~g~~~~~C~ 211 (247)
+..|.|+.||+|.+|+.= | .+.|.
T Consensus 3923 -------------------------------------------------~f~CnC~~gyTG~~Ce~~-----G--i~eCs 3946 (4289)
T KOG1219|consen 3923 -------------------------------------------------GFLCNCPNGYTGKRCEAR-----G--ISECS 3946 (4289)
T ss_pred -------------------------------------------------CeeEeCCCCccCceeecc-----c--ccccc
Confidence 128999999999999762 2 34566
Q ss_pred cCCCCCCCCCCCCCCCCCCCC--eeeCCCCCCCCCCC
Q psy15472 212 SCECNPAGSVKNTPNCDSVKG--QCECKDNVEGAQCR 246 (247)
Q Consensus 212 ~C~C~~~g~~~~~~~C~~~tG--~C~C~~g~~G~~C~ 246 (247)
.-.|..+ +.|....| .|.|.+++.|+.|.
T Consensus 3947 ~n~C~~g------g~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3947 KNVCGTG------GQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred cccccCC------ceeeccCCceEeccChhHhcccCc
Confidence 6667765 45787778 89999999999874
No 19
>KOG1226|consensus
Probab=97.39 E-value=0.00059 Score=64.89 Aligned_cols=23 Identities=30% Similarity=0.811 Sum_probs=15.9
Q ss_pred CeeccCCCCCCCCCCCCCCCCCCcc
Q psy15472 23 GGHCLDCQGDRDGPNCEKCRDNYYQ 47 (247)
Q Consensus 23 ~g~C~~C~~~~~G~~Ce~C~~Gy~g 47 (247)
=|+| .|.++|.|.+|| |+..-+.
T Consensus 477 CG~C-~C~~G~~G~~CE-C~~~~~s 499 (783)
T KOG1226|consen 477 CGQC-RCDEGWLGKKCE-CSTDELS 499 (783)
T ss_pred ecce-ecCCCCCCCccc-CCccccC
Confidence 3778 688999999985 4444333
No 20
>KOG4260|consensus
Probab=97.26 E-value=0.0003 Score=59.21 Aligned_cols=62 Identities=27% Similarity=0.722 Sum_probs=45.8
Q ss_pred eeccCCCCCCCCCCCCCCCCCCccCCCCCCCcCCCCCCCCCCCcC--CCCCceeeCCCCCcCCCCCCCCCCcccCC
Q psy15472 24 GHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQ--CNSEGRCQCKPGVTGDKCDRCDVNHYDFG 97 (247)
Q Consensus 24 g~C~~C~~~~~G~~Ce~C~~Gy~g~~~~~~C~~C~C~~~g~~~~~--c~~~g~C~C~~g~~G~~C~~C~~G~~g~~ 97 (247)
-+| |++||.|+.|..|+-|--.+ |.+.|...+. -..+|.|.|.+||+|..|..|..+||-..
T Consensus 129 kvC--Cp~gtyGpdCl~Cpggser~----------C~GnG~C~GdGsR~GsGkCkC~~GY~Gp~C~~Cg~eyfes~ 192 (350)
T KOG4260|consen 129 KVC--CPDGTYGPDCLQCPGGSERP----------CFGNGSCHGDGSREGSGKCKCETGYTGPLCRYCGIEYFESS 192 (350)
T ss_pred eec--cCCCCcCCccccCCCCCcCC----------cCCCCcccCCCCCCCCCcccccCCCCCccccccchHHHHhh
Confidence 345 99999999999998765432 3444433221 12379999999999999999999998653
No 21
>KOG1226|consensus
Probab=97.22 E-value=0.00066 Score=64.60 Aligned_cols=15 Identities=47% Similarity=1.327 Sum_probs=14.0
Q ss_pred ceeeCCCCCcCCCCC
Q psy15472 73 GRCQCKPGVTGDKCD 87 (247)
Q Consensus 73 g~C~C~~g~~G~~C~ 87 (247)
|+|.|.+||.|.+|+
T Consensus 478 G~C~C~~G~~G~~CE 492 (783)
T KOG1226|consen 478 GQCRCDEGWLGKKCE 492 (783)
T ss_pred cceecCCCCCCCccc
Confidence 789999999999996
No 22
>smart00051 DSL delta serrate ligand.
Probab=97.04 E-value=0.00095 Score=44.30 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=18.2
Q ss_pred CCCCCCCCCeeeCCCCCCCCCC
Q psy15472 224 TPNCDSVKGQCECKDNVEGAQC 245 (247)
Q Consensus 224 ~~~C~~~tG~C~C~~g~~G~~C 245 (247)
...|++ +|+++|.+||+|..|
T Consensus 43 ~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 43 HYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred CccCCc-CCCEecCCCCcCCCC
Confidence 456886 799999999999987
No 23
>smart00051 DSL delta serrate ligand.
Probab=96.93 E-value=0.0012 Score=43.73 Aligned_cols=20 Identities=30% Similarity=0.758 Sum_probs=17.5
Q ss_pred cCCCCCceeeCCCCCcCCCC
Q psy15472 67 LQCNSEGRCQCKPGVTGDKC 86 (247)
Q Consensus 67 ~~c~~~g~C~C~~g~~G~~C 86 (247)
..|+..|.+.|.+||+|..|
T Consensus 44 ~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 44 YTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred ccCCcCCCEecCCCCcCCCC
Confidence 36878899999999999986
No 24
>KOG1219|consensus
Probab=96.83 E-value=0.0022 Score=67.29 Aligned_cols=53 Identities=30% Similarity=0.716 Sum_probs=38.6
Q ss_pred CCeeccCCCCCCCCCCCCCCCCCCccCCCCCCCcCCCCCCCCCCCcCCCC---CceeeCCCCCcCCCCCC
Q psy15472 22 HGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNS---EGRCQCKPGVTGDKCDR 88 (247)
Q Consensus 22 ~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~~~~~C~~C~C~~~g~~~~~c~~---~g~C~C~~g~~G~~C~~ 88 (247)
++.+| +|+.-|.|.+||. ....|.+-+|...| +|.. +..|.|+.+|+|.+||.
T Consensus 3884 ggy~C-kCpsqysG~~CEi---------~~epC~snPC~~Gg----tCip~~n~f~CnC~~gyTG~~Ce~ 3939 (4289)
T KOG1219|consen 3884 GGYKC-KCPSQYSGNHCEI---------DLEPCASNPCLTGG----TCIPFYNGFLCNCPNGYTGKRCEA 3939 (4289)
T ss_pred CceEE-eCcccccCccccc---------ccccccCCCCCCCC----EEEecCCCeeEeCCCCccCceeec
Confidence 46667 6777777777764 22356666777665 4553 78899999999999985
No 25
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.55 E-value=0.00084 Score=30.17 Aligned_cols=13 Identities=31% Similarity=1.030 Sum_probs=10.8
Q ss_pred eeeCCCCCCCCCC
Q psy15472 233 QCECKDNVEGAQC 245 (247)
Q Consensus 233 ~C~C~~g~~G~~C 245 (247)
+|+|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 5899999999987
No 26
>KOG1388|consensus
Probab=96.46 E-value=0.002 Score=52.54 Aligned_cols=69 Identities=35% Similarity=0.954 Sum_probs=50.8
Q ss_pred CCcCCCCCCCCCCCcCCCCCceee-CCCCCcCCCCCCCCCCccc-CCCCCcccccCCCCCCCCCCCCCcCCCCceeccCC
Q psy15472 53 FCTACNCNPIGSLNLQCNSEGRCQ-CKPGVTGDKCDRCDVNHYD-FGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQL 130 (247)
Q Consensus 53 ~C~~C~C~~~g~~~~~c~~~g~C~-C~~g~~G~~C~~C~~G~~g-~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~ 130 (247)
.|..|.|++++ .|...-.|. |+-+.+|..|++|+.|||| .....|++|+|+.... .|.+++++|+|...
T Consensus 48 ~cP~~~cNGh~----~c~t~~v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~~-----~~~~~~~~c~c~~k 118 (217)
T KOG1388|consen 48 FCPLCQCNGHS----DCNTQHVCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGAS-----ACVTLTGKCFCTTK 118 (217)
T ss_pred cChHHHhcCCC----CcccceeeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCee-----eeeccCCccccccc
Confidence 45667777554 344333343 8899999999999999999 4455699999986653 38889998888543
No 27
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.43 E-value=0.0027 Score=36.13 Aligned_cols=21 Identities=33% Similarity=0.854 Sum_probs=18.2
Q ss_pred CCCCCCCCeeeCCCCCCCCCC
Q psy15472 225 PNCDSVKGQCECKDNVEGAQC 245 (247)
Q Consensus 225 ~~C~~~tG~C~C~~g~~G~~C 245 (247)
++|+..+|+|+|.++|+|+.|
T Consensus 12 G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 12 GTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CEEeCCCCEEECCCCCcCCCC
Confidence 458877899999999999987
No 28
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.37 E-value=0.0015 Score=29.35 Aligned_cols=13 Identities=62% Similarity=1.464 Sum_probs=10.4
Q ss_pred eeeCCCCCcCCCC
Q psy15472 74 RCQCKPGVTGDKC 86 (247)
Q Consensus 74 ~C~C~~g~~G~~C 86 (247)
.|+|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4889999999887
No 29
>KOG3509|consensus
Probab=96.25 E-value=0.015 Score=57.48 Aligned_cols=71 Identities=30% Similarity=0.745 Sum_probs=56.3
Q ss_pred CeeccCCCCCCCCCCCCCCCCCCccCC----CCCCCcCCCCCCCCCCCcCCCC-Cceee-CCCCCcCCCCCCCCCCcccC
Q psy15472 23 GGHCLDCQGDRDGPNCEKCRDNYYQKS----GDNFCTACNCNPIGSLNLQCNS-EGRCQ-CKPGVTGDKCDRCDVNHYDF 96 (247)
Q Consensus 23 ~g~C~~C~~~~~G~~Ce~C~~Gy~g~~----~~~~C~~C~C~~~g~~~~~c~~-~g~C~-C~~g~~G~~C~~C~~G~~g~ 96 (247)
.-+| .|+.++.|.+|+.|.++|.... ....+..|.+..+.. .|.. .+.+. |+..+.|.+|+.|.+||++.
T Consensus 717 ~~~C-~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~---~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~d 792 (964)
T KOG3509|consen 717 VEQC-QCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHIS---QCEDDLGYNTDCQNNTEGDRCELCSPGTYGD 792 (964)
T ss_pred cccc-ccCccccCcccccccccccccccCCcCcccCcccccCCCcc---cccccccccccccccCccceeeecCCCcccc
Confidence 4578 4999999999999999987553 345566677765543 4555 67776 99999999999999999997
Q ss_pred C
Q psy15472 97 G 97 (247)
Q Consensus 97 ~ 97 (247)
.
T Consensus 793 a 793 (964)
T KOG3509|consen 793 A 793 (964)
T ss_pred C
Confidence 6
No 30
>KOG3509|consensus
Probab=96.21 E-value=0.0078 Score=59.49 Aligned_cols=87 Identities=30% Similarity=0.703 Sum_probs=62.4
Q ss_pred CCCCCCCCCcccchhhhcccCCCeeccCCCCCCCCCCCCCCCCCCccCCCC---CCCcC-CC------CCCCCCCCcCCC
Q psy15472 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGD---NFCTA-CN------CNPIGSLNLQCN 70 (247)
Q Consensus 1 c~C~~h~~~C~~~~~~~~~~~~~g~C~~C~~~~~G~~Ce~C~~Gy~g~~~~---~~C~~-C~------C~~~g~~~~~c~ 70 (247)
|.++.|+..|..+ .+++..|++++.|.+|+.|++|||++... -++.+ +. +++. .....+
T Consensus 754 c~~~~h~~~c~~~---------~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p~~~l~~~~~~~~r--~~l~~~ 822 (964)
T KOG3509|consen 754 CECNSHISQCEDD---------LGYNTDCQNNTEGDRCELCSPGTYGDARRGTPEDCRPATALTIQCSCNNR--SPLSCD 822 (964)
T ss_pred cccCCCccccccc---------ccccccccccCccceeeecCCCccccCccCCcccCCccchhhhhhhhccc--Cccccc
Confidence 4577888888654 57888999999999999999999998732 23333 11 1111 111223
Q ss_pred C-Cceee-CCCCCcCCCCCCCCCCcccCCC
Q psy15472 71 S-EGRCQ-CKPGVTGDKCDRCDVNHYDFGE 98 (247)
Q Consensus 71 ~-~g~C~-C~~g~~G~~C~~C~~G~~g~~~ 98 (247)
. ...|. |+++++|..|+++..+|+++..
T Consensus 823 ~~~~~~~~~p~~~~g~~~~~~~~~~~~~at 852 (964)
T KOG3509|consen 823 GFGPGCLLCPHNTEGTTCERVKAGYYGFAT 852 (964)
T ss_pred cCCCCcccCCCCccccchhhhccccccccC
Confidence 3 34565 9999999999999999999863
No 31
>KOG4260|consensus
Probab=95.89 E-value=0.011 Score=50.11 Aligned_cols=26 Identities=31% Similarity=0.965 Sum_probs=23.2
Q ss_pred CccccCCCCcccCCCCCCCCCcccCC
Q psy15472 181 EGRCQCKPGVTGDKCDRCDVNHYDFG 206 (247)
Q Consensus 181 ~G~C~C~~g~~G~~C~~C~~g~~g~~ 206 (247)
+|.|.|.+||+|+.|..|.++||...
T Consensus 167 sGkCkC~~GY~Gp~C~~Cg~eyfes~ 192 (350)
T KOG4260|consen 167 SGKCKCETGYTGPLCRYCGIEYFESS 192 (350)
T ss_pred CCcccccCCCCCccccccchHHHHhh
Confidence 46999999999999999999999754
No 32
>KOG1218|consensus
Probab=95.31 E-value=1 Score=38.99 Aligned_cols=17 Identities=29% Similarity=0.645 Sum_probs=14.6
Q ss_pred CceeeCCCCCcCCCCCC
Q psy15472 72 EGRCQCKPGVTGDKCDR 88 (247)
Q Consensus 72 ~g~C~C~~g~~G~~C~~ 88 (247)
.+.|.++.++.|..|+.
T Consensus 48 ~~~~~~~~~~~~~~c~~ 64 (316)
T KOG1218|consen 48 SGECGLGYGFVGSVCRI 64 (316)
T ss_pred ceeEecccccCCCcccc
Confidence 78899999999999863
No 33
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=94.90 E-value=0.023 Score=32.23 Aligned_cols=24 Identities=50% Similarity=1.156 Sum_probs=18.8
Q ss_pred CCCCCCCCcCCCC-CceeeCCCCCcCCCC
Q psy15472 59 CNPIGSLNLQCNS-EGRCQCKPGVTGDKC 86 (247)
Q Consensus 59 C~~~g~~~~~c~~-~g~C~C~~g~~G~~C 86 (247)
|+++| +|+. .++|+|.+||+|+.|
T Consensus 8 C~~~G----~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 8 CSGHG----TCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred cCCCC----EEeCCCCEEECCCCCcCCCC
Confidence 45555 5666 599999999999876
No 34
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=94.44 E-value=0.0096 Score=39.47 Aligned_cols=45 Identities=24% Similarity=0.609 Sum_probs=22.3
Q ss_pred cccCCCCcccCCCCC-CCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCCeeeCCCCCCCCCC
Q psy15472 183 RCQCKPGVTGDKCDR-CDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245 (247)
Q Consensus 183 ~C~C~~g~~G~~C~~-C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C 245 (247)
+-.|.++|.|..|+. |.+.- .....-.|+ .+|+=+|.+||+|+.|
T Consensus 18 rv~C~~nyyG~~C~~~C~~~~-----------------d~~ghy~Cd-~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 18 RVVCDENYYGPNCSKFCKPRD-----------------DSFGHYTCD-SNGNKVCLPGWTGPNC 63 (63)
T ss_dssp -----TTEETTTT-EE---EE-----------------ETTEEEEE--SS--EEE-TTEESTTS
T ss_pred EEECCCCCCCccccCCcCCCc-----------------CCcCCcccC-CCCCCCCCCCCcCCCC
Confidence 567889999999976 55421 000123577 4899999999999987
No 35
>KOG1218|consensus
Probab=94.22 E-value=1.2 Score=38.64 Aligned_cols=58 Identities=26% Similarity=0.532 Sum_probs=38.3
Q ss_pred CccccCCCCcccCCCCC-CCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCCeeeCCCCCCCCCCC
Q psy15472 181 EGRCQCKPGVTGDKCDR-CDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCR 246 (247)
Q Consensus 181 ~G~C~C~~g~~G~~C~~-C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~G~~C~ 246 (247)
.+.+.+..++.+..+.. .+.++.+.... ..|.|.. +..++..++.+.+.++|.+..+.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~c~c~~------g~~~~~~~~~~~~~~~~~~~~~~ 296 (316)
T KOG1218|consen 238 PGICGCVLGEGETVCLRERPKGSLGGSCF--QRCQCGG------GLVCRPGKGSCRCSPGAALATCQ 296 (316)
T ss_pred CceeEeCcccccccccccCccceecCccc--cceeeCC------CCccccccccccCCCcccccccc
Confidence 46777777777777765 44445554422 4455554 34577788899999998887664
No 36
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=93.85 E-value=0.0082 Score=39.80 Aligned_cols=20 Identities=45% Similarity=1.017 Sum_probs=13.6
Q ss_pred cCCCCCceeeCCCCCcCCCC
Q psy15472 67 LQCNSEGRCQCKPGVTGDKC 86 (247)
Q Consensus 67 ~~c~~~g~C~C~~g~~G~~C 86 (247)
-.|+..|+=+|.+||+|+.|
T Consensus 44 y~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 44 YTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp EEE-SS--EEE-TTEESTTS
T ss_pred cccCCCCCCCCCCCCcCCCC
Confidence 36777899999999999987
No 37
>KOG1217|consensus
Probab=93.04 E-value=2.2 Score=38.76 Aligned_cols=14 Identities=50% Similarity=1.179 Sum_probs=9.3
Q ss_pred ceeeCCCCCcCCCC
Q psy15472 73 GRCQCKPGVTGDKC 86 (247)
Q Consensus 73 g~C~C~~g~~G~~C 86 (247)
.+|.|+++|++..+
T Consensus 252 ~~C~~~~g~~~~~~ 265 (487)
T KOG1217|consen 252 YTCRCPEGYTGDAC 265 (487)
T ss_pred eeeeCCCCcccccc
Confidence 56777777777663
No 38
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=92.08 E-value=0.045 Score=30.97 Aligned_cols=28 Identities=29% Similarity=0.552 Sum_probs=18.0
Q ss_pred CCCCCCCCCcCCCCCceeeCCCCCcCCC
Q psy15472 58 NCNPIGSLNLQCNSEGRCQCKPGVTGDK 85 (247)
Q Consensus 58 ~C~~~g~~~~~c~~~g~C~C~~g~~G~~ 85 (247)
+|.+.|+....-..++.|+|++||+|++
T Consensus 5 ~C~n~g~C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 5 PCQNGGTCIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp SSTTTEEEEEESTSEEEEEEBTTEESTT
T ss_pred cCCCCeEEEeCCCCCEEeECCCCCccCC
Confidence 4555543322223478999999999974
No 39
>KOG0196|consensus
Probab=88.78 E-value=0.49 Score=46.21 Aligned_cols=54 Identities=28% Similarity=0.679 Sum_probs=38.2
Q ss_pred CccccCCCCc----ccCCCCCCCCCcccCC--CCCCccCCCCCCCCCCCCCCCCCCCCeeeCCCCCC
Q psy15472 181 EGRCQCKPGV----TGDKCDRCDVNHYDFG--EAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVE 241 (247)
Q Consensus 181 ~G~C~C~~g~----~G~~C~~C~~g~~g~~--~~~C~~C~C~~~g~~~~~~~C~~~tG~C~C~~g~~ 241 (247)
.|.|.|++|| .|..|..|++|+|... ...|.+|+=+-..+ .+..-.|.|..||.
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~-------~ega~~C~C~~gyy 317 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSS-------SEGATSCTCENGYY 317 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCC-------CCCCCcccccCCcc
Confidence 5899999998 4689999999999876 45788877433221 11122688888764
No 40
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=88.26 E-value=8.7 Score=38.27 Aligned_cols=17 Identities=29% Similarity=0.677 Sum_probs=10.2
Q ss_pred CCCCCCcccCCCCCcccc
Q psy15472 87 DRCDVNHYDFGEAGCKSC 104 (247)
Q Consensus 87 ~~C~~G~~g~~~~~C~~C 104 (247)
..|..|||... ..|.+|
T Consensus 618 ~~C~~GYY~d~-~~C~~C 634 (800)
T PTZ00214 618 GACVDGYYADG-DACLPC 634 (800)
T ss_pred ccCCCCcccCC-CccccC
Confidence 36777777543 346655
No 41
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=88.01 E-value=0.68 Score=26.57 Aligned_cols=21 Identities=33% Similarity=0.944 Sum_probs=16.1
Q ss_pred CCCCCCC--eeeCCCCCC-CCCCC
Q psy15472 226 NCDSVKG--QCECKDNVE-GAQCR 246 (247)
Q Consensus 226 ~C~~~tG--~C~C~~g~~-G~~C~ 246 (247)
.|....| +|.|+++|. |.+|+
T Consensus 16 ~C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 16 TCVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred EeECCCCCeEeECCCCCccCCcCC
Confidence 3554444 799999999 99885
No 42
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=87.51 E-value=0.73 Score=26.02 Aligned_cols=21 Identities=29% Similarity=0.890 Sum_probs=15.8
Q ss_pred CCCCCCC--eeeCCCCCCCCCCC
Q psy15472 226 NCDSVKG--QCECKDNVEGAQCR 246 (247)
Q Consensus 226 ~C~~~tG--~C~C~~g~~G~~C~ 246 (247)
.|....+ .|.|+++|.|.+|+
T Consensus 16 ~C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 16 TCVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred EeECCCCCeEeECCCCCcCCcCC
Confidence 3544443 79999999999885
No 43
>KOG1217|consensus
Probab=87.19 E-value=6.7 Score=35.52 Aligned_cols=16 Identities=44% Similarity=1.107 Sum_probs=12.3
Q ss_pred ceeeCCCCCcCCCCCC
Q psy15472 73 GRCQCKPGVTGDKCDR 88 (247)
Q Consensus 73 g~C~C~~g~~G~~C~~ 88 (247)
..|.|+++|.|..|+.
T Consensus 192 ~~C~c~~~~~~~~~~~ 207 (487)
T KOG1217|consen 192 YLCSCPPGYTGSTCET 207 (487)
T ss_pred eeEeCCCCccCCcCcC
Confidence 5688888888887764
No 44
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=84.52 E-value=3.1 Score=29.81 Aligned_cols=23 Identities=30% Similarity=0.701 Sum_probs=13.8
Q ss_pred CCCCCCCCCCccCCCC--CCCcCCC
Q psy15472 36 PNCEKCRDNYYQKSGD--NFCTACN 58 (247)
Q Consensus 36 ~~Ce~C~~Gy~g~~~~--~~C~~C~ 58 (247)
..|..|++|+|-+... ..|++|.
T Consensus 33 t~C~~C~~g~ys~~~~~~~~C~~c~ 57 (98)
T cd00185 33 TVCEPCPPGTYTDSWNHLPKCLSCR 57 (98)
T ss_pred CeecCCCCCCcccCCCCCCcCCcCc
Confidence 3466788888765432 3566653
No 45
>KOG0196|consensus
Probab=83.28 E-value=1.6 Score=42.80 Aligned_cols=55 Identities=27% Similarity=0.568 Sum_probs=37.7
Q ss_pred CceeeCCCCCc----CCCCCCCCCCcccCCC--CCcccccCCCCCCCCCCCCCcCCCCceeccCCCCC
Q psy15472 72 EGRCQCKPGVT----GDKCDRCDVNHYDFGE--AGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSR 133 (247)
Q Consensus 72 ~g~C~C~~g~~----G~~C~~C~~G~~g~~~--~~C~~C~C~~~g~~~~~~~C~~~tG~C~c~~~~~~ 133 (247)
.|.|.|++||. |..|+.|++|+|-... ..|.+|+=+...+.. ..-.|.|..++++
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~~e-------ga~~C~C~~gyyR 318 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSSSE-------GATSCTCENGYYR 318 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCCCC-------CCCcccccCCccc
Confidence 68999999984 5889999999998763 458887655443222 2345666655543
No 46
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=81.62 E-value=1.8 Score=23.82 Aligned_cols=16 Identities=25% Similarity=0.729 Sum_probs=13.4
Q ss_pred CCeeeCCCCCCCC-CCC
Q psy15472 231 KGQCECKDNVEGA-QCR 246 (247)
Q Consensus 231 tG~C~C~~g~~G~-~C~ 246 (247)
..+|.|+++|.|. .|+
T Consensus 20 ~~~C~C~~g~~g~~~C~ 36 (36)
T cd00053 20 SYRCVCPPGYTGDRSCE 36 (36)
T ss_pred CeEeECCCCCcccCCcC
Confidence 3489999999998 774
No 47
>smart00181 EGF Epidermal growth factor-like domain.
Probab=79.08 E-value=2.8 Score=23.39 Aligned_cols=16 Identities=44% Similarity=1.163 Sum_probs=13.0
Q ss_pred CCceeeCCCCCcC-CCC
Q psy15472 71 SEGRCQCKPGVTG-DKC 86 (247)
Q Consensus 71 ~~g~C~C~~g~~G-~~C 86 (247)
....|.|++||.| ..|
T Consensus 18 ~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 18 GSYTCSCPPGYTGDKRC 34 (35)
T ss_pred CCeEeECCCCCccCCcc
Confidence 3688999999999 665
No 48
>KOG1214|consensus
Probab=73.95 E-value=20 Score=35.61 Aligned_cols=48 Identities=25% Similarity=0.728 Sum_probs=31.3
Q ss_pred CCCCCCccCC----CCCCCcCCCCCCCCCCCcCCC---CCceeeCCCCCcCCCCCCCCCC
Q psy15472 40 KCRDNYYQKS----GDNFCTACNCNPIGSLNLQCN---SEGRCQCKPGVTGDKCDRCDVN 92 (247)
Q Consensus 40 ~C~~Gy~g~~----~~~~C~~C~C~~~g~~~~~c~---~~g~C~C~~g~~G~~C~~C~~G 92 (247)
.|.|||-|+. ..+.|.+..|++... |. .+..|+|++||.|+-= +|.|+
T Consensus 812 ~CLPGfsGDG~~c~dvDeC~psrChp~A~----CyntpgsfsC~C~pGy~GDGf-~CVP~ 866 (1289)
T KOG1214|consen 812 ACLPGFSGDGHQCTDVDECSPSRCHPAAT----CYNTPGSFSCRCQPGYYGDGF-QCVPD 866 (1289)
T ss_pred eecCCccCCccccccccccCccccCCCce----EecCCCcceeecccCccCCCc-eecCC
Confidence 4666666654 357788888877553 33 2678999999988642 45554
No 49
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=64.22 E-value=4.9 Score=22.97 Aligned_cols=17 Identities=35% Similarity=0.874 Sum_probs=13.1
Q ss_pred CCCCC-CCCeeeCCCCCC
Q psy15472 225 PNCDS-VKGQCECKDNVE 241 (247)
Q Consensus 225 ~~C~~-~tG~C~C~~g~~ 241 (247)
+.||+ ..++|.|++||.
T Consensus 10 A~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 10 ADCDPNSPGQCFCPEGYI 27 (34)
T ss_pred CccCCCCCCceeCCCceE
Confidence 45777 456999999985
No 50
>PHA02714 CD-30-like protein; Provisional
Probab=63.94 E-value=7.9 Score=27.70 Aligned_cols=42 Identities=36% Similarity=0.899 Sum_probs=26.4
Q ss_pred CCCCCCccCCCCCCCcCCC-CCCCCCCCcCCCC--CceeeCCCCC
Q psy15472 40 KCRDNYYQKSGDNFCTACN-CNPIGSLNLQCNS--EGRCQCKPGV 81 (247)
Q Consensus 40 ~C~~Gy~g~~~~~~C~~C~-C~~~g~~~~~c~~--~g~C~C~~g~ 81 (247)
+|+++||.++....|.+|. |...-.....|.. .-+|.|+||.
T Consensus 23 qC~~dYY~Dpe~g~CtACVtC~~~lVEktPC~~ns~RvCeCkpGm 67 (110)
T PHA02714 23 TCPKDYYLEPEDGLCTACVTCLSNMVEKQSCGPDKPRKCQCGPGL 67 (110)
T ss_pred cCCCcccccCCCCceeeecccCCCcEEeccCCCCCCceecCCCCC
Confidence 4678999887777788775 5432111234543 6778888854
No 51
>PHA02887 EGF-like protein; Provisional
Probab=62.35 E-value=4.4 Score=30.07 Aligned_cols=17 Identities=47% Similarity=0.993 Sum_probs=15.1
Q ss_pred CccccCCCCcccCCCCC
Q psy15472 181 EGRCQCKPGVTGDKCDR 197 (247)
Q Consensus 181 ~G~C~C~~g~~G~~C~~ 197 (247)
+-.|.|.+||+|.+|+.
T Consensus 107 epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 107 EKFCICNKGYTGIRCDE 123 (126)
T ss_pred CceeECCCCcccCCCCc
Confidence 56899999999999975
No 52
>KOG1214|consensus
Probab=61.84 E-value=6.3 Score=38.96 Aligned_cols=49 Identities=33% Similarity=0.798 Sum_probs=28.9
Q ss_pred ccccCCCCcccCCCCCCCCCcccCCCCCCccCCCCCCCCCCCCCCCCCCCC--eeeCCCCCCCC
Q psy15472 182 GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKG--QCECKDNVEGA 243 (247)
Q Consensus 182 G~C~C~~g~~G~~C~~C~~g~~g~~~~~C~~C~C~~~g~~~~~~~C~~~tG--~C~C~~g~~G~ 243 (247)
..|.|.|||.|.- +.--..+.|.+-.|.+. +.|-...| .|.|++||.|+
T Consensus 809 y~C~CLPGfsGDG-------~~c~dvDeC~psrChp~------A~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 809 YSCACLPGFSGDG-------HQCTDVDECSPSRCHPA------ATCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred EEEeecCCccCCc-------cccccccccCccccCCC------ceEecCCCcceeecccCccCC
Confidence 4556666665531 11112456777777764 33443334 79999999985
No 53
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=59.87 E-value=93 Score=28.36 Aligned_cols=14 Identities=21% Similarity=0.567 Sum_probs=10.0
Q ss_pred CCCCCCCCCcccCC
Q psy15472 84 DKCDRCDVNHYDFG 97 (247)
Q Consensus 84 ~~C~~C~~G~~g~~ 97 (247)
..|.+|..+|+..+
T Consensus 37 ~~Ct~C~~~~~lt~ 50 (397)
T PF03302_consen 37 EVCTECNSGYYLTP 50 (397)
T ss_pred CccCcCCCCCcCCC
Confidence 56778888887654
No 54
>PHA02887 EGF-like protein; Provisional
Probab=53.86 E-value=7.9 Score=28.77 Aligned_cols=17 Identities=24% Similarity=0.726 Sum_probs=14.5
Q ss_pred CCeeeCCCCCCCCCCCC
Q psy15472 231 KGQCECKDNVEGAQCRS 247 (247)
Q Consensus 231 tG~C~C~~g~~G~~C~~ 247 (247)
.-.|.|..||+|.+|+.
T Consensus 107 epsCrC~~GYtG~RCE~ 123 (126)
T PHA02887 107 EKFCICNKGYTGIRCDE 123 (126)
T ss_pred CceeECCCCcccCCCCc
Confidence 34799999999999973
No 55
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=49.74 E-value=11 Score=19.72 Aligned_cols=10 Identities=40% Similarity=1.049 Sum_probs=6.7
Q ss_pred ceeeCCCCCc
Q psy15472 73 GRCQCKPGVT 82 (247)
Q Consensus 73 g~C~C~~g~~ 82 (247)
+.|.|++||.
T Consensus 2 y~C~C~~Gy~ 11 (24)
T PF12662_consen 2 YTCSCPPGYQ 11 (24)
T ss_pred EEeeCCCCCc
Confidence 5677777765
No 56
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=44.65 E-value=21 Score=21.76 Aligned_cols=22 Identities=32% Similarity=0.862 Sum_probs=13.1
Q ss_pred CCCCCCCCCccCCC-CCCCcCCC
Q psy15472 37 NCEKCRDNYYQKSG-DNFCTACN 58 (247)
Q Consensus 37 ~Ce~C~~Gy~g~~~-~~~C~~C~ 58 (247)
.|+.|+.|+|.+.. ...|++|+
T Consensus 10 ~C~~Cp~GtYq~~~g~~~C~~Cp 32 (48)
T PF07699_consen 10 KCQPCPKGTYQDEEGQTSCTPCP 32 (48)
T ss_pred ccCCCCCCccCCccCCccCccCc
Confidence 46677778776542 33455554
No 57
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=42.31 E-value=9.1 Score=22.11 Aligned_cols=13 Identities=54% Similarity=1.191 Sum_probs=10.2
Q ss_pred CceeeCCCCCcCC
Q psy15472 72 EGRCQCKPGVTGD 84 (247)
Q Consensus 72 ~g~C~C~~g~~G~ 84 (247)
...|+|++||+|.
T Consensus 20 ~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 20 SYTCTCKPGYEGD 32 (36)
T ss_dssp SEEEEE-CEEECC
T ss_pred CEEeECCCCCccC
Confidence 6889999999885
No 58
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=39.97 E-value=17 Score=27.56 Aligned_cols=17 Identities=24% Similarity=0.724 Sum_probs=14.4
Q ss_pred CCeeeCCCCCCCCCCCC
Q psy15472 231 KGQCECKDNVEGAQCRS 247 (247)
Q Consensus 231 tG~C~C~~g~~G~~C~~ 247 (247)
+-.|.|..||+|.+|+.
T Consensus 66 ~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 66 GMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CceeECCCCcccccccc
Confidence 34799999999999974
No 59
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=39.84 E-value=33 Score=20.80 Aligned_cols=25 Identities=28% Similarity=0.818 Sum_probs=13.6
Q ss_pred eeccCCCCCC--CCCCCC-CCCCCCccC
Q psy15472 24 GHCLDCQGDR--DGPNCE-KCRDNYYQK 48 (247)
Q Consensus 24 g~C~~C~~~~--~G~~Ce-~C~~Gy~g~ 48 (247)
..|+.|++++ .+..|- .|+++||.+
T Consensus 15 ~~C~~C~~~~~~~~~~Cv~~C~~~~~~~ 42 (49)
T cd00064 15 DQCTSCRHGFYLDGGTCVSECPEGTYAD 42 (49)
T ss_pred CcCccCcCccCCCCCcccccCCCCceec
Confidence 3466666665 334454 466666553
No 60
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=37.17 E-value=20 Score=27.15 Aligned_cols=17 Identities=35% Similarity=0.860 Sum_probs=15.4
Q ss_pred CceeeCCCCCcCCCCCC
Q psy15472 72 EGRCQCKPGVTGDKCDR 88 (247)
Q Consensus 72 ~g~C~C~~g~~G~~C~~ 88 (247)
...|.|..||+|.+||.
T Consensus 66 ~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 66 GMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CceeECCCCcccccccc
Confidence 67899999999999985
No 61
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=33.92 E-value=66 Score=24.34 Aligned_cols=24 Identities=25% Similarity=0.675 Sum_probs=17.1
Q ss_pred ccCCCCCCCCCcccCC---CCCCccCC
Q psy15472 191 TGDKCDRCDVNHYDFG---EAGCKSCE 214 (247)
Q Consensus 191 ~G~~C~~C~~g~~g~~---~~~C~~C~ 214 (247)
+...|..|++|+|-.. ...|..|.
T Consensus 61 t~T~C~PCp~GTYTe~~N~~~~C~~C~ 87 (127)
T PHA02637 61 TNTQCTPCGSGTFTSHNNHLPACLSCN 87 (127)
T ss_pred CCcccccCCCCCeeccCCCCCcccccC
Confidence 4568888999988654 44677765
No 62
>KOG4611|consensus
Probab=31.87 E-value=56 Score=29.36 Aligned_cols=22 Identities=27% Similarity=0.720 Sum_probs=15.7
Q ss_pred CCCCCCCCCcccCCCCCccccc
Q psy15472 84 DKCDRCDVNHYDFGEAGCKSCE 105 (247)
Q Consensus 84 ~~C~~C~~G~~g~~~~~C~~C~ 105 (247)
..|..|+.|||......|..|+
T Consensus 98 afcgncasgfyrndngyctkce 119 (747)
T KOG4611|consen 98 AFCGNCASGFYRNDNGYCTKCE 119 (747)
T ss_pred cccccccccceECCCccccccc
Confidence 4677899999987654565543
No 63
>KOG3607|consensus
Probab=24.10 E-value=63 Score=31.91 Aligned_cols=27 Identities=41% Similarity=0.856 Sum_probs=22.3
Q ss_pred CCCCCCCCCcCCCCCceeeCCCCCcCCCCCC
Q psy15472 58 NCNPIGSLNLQCNSEGRCQCKPGVTGDKCDR 88 (247)
Q Consensus 58 ~C~~~g~~~~~c~~~g~C~C~~g~~G~~C~~ 88 (247)
.|+.+| +|+....|+|.++|.++.|+.
T Consensus 631 ~C~g~G----VCnn~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 631 TCNGHG----VCNNELNCHCEPGWAPPFCFI 657 (716)
T ss_pred ccCCCc----ccCCCcceeeCCCCCCCcccc
Confidence 355554 688899999999999999985
Done!