RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15472
         (247 letters)



>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
           laminins are the major noncollagenous components of
           basement membranes that mediate cell adhesion, growth
           migration, and differentiation; the laminin-type
           epidermal growth factor-like module occurs in tandem
           arrays; the domain contains 4 disulfide bonds (loops
           a-d) the first three resemble epidermal growth factor
           (EGF); the number of copies of this domain in the
           different forms of laminins is highly variable ranging
           from 3 up to 22 copies.
          Length = 50

 Score = 47.0 bits (112), Expect = 1e-07
 Identities = 21/46 (45%), Positives = 28/46 (60%), Gaps = 1/46 (2%)

Query: 56  ACNCNPIGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAG 100
            C+CN  GSL+ QC+   G+C+CKP  TG +CDRC   +Y     G
Sbjct: 1   PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46



 Score = 38.1 bits (89), Expect = 2e-04
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 1/41 (2%)

Query: 170 HGGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAG 209
             GSL+ QC+   G+C+CKP  TG +CDRC   +Y     G
Sbjct: 6   GHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46



 Score = 34.6 bits (80), Expect = 0.003
 Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 2/34 (5%)

Query: 212 SCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
            C+CN  GS+     CD   GQCECK N  G +C
Sbjct: 1   PCDCNGHGSLSGQ--CDPGTGQCECKPNTTGRRC 32


>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
           domai. 
          Length = 46

 Score = 45.8 bits (109), Expect = 2e-07
 Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)

Query: 57  CNCNPIGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAGC 101
           C+C+P GS +  C+ + G+C+CKP VTG +CDRC   +Y  G  GC
Sbjct: 1   CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46



 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 20/41 (48%), Positives = 27/41 (65%), Gaps = 1/41 (2%)

Query: 171 GGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAGC 210
           GGS +  C+ + G+C+CKP VTG +CDRC   +Y  G  GC
Sbjct: 6   GGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46



 Score = 33.4 bits (77), Expect = 0.007
 Identities = 18/33 (54%), Positives = 21/33 (63%), Gaps = 2/33 (6%)

Query: 213 CECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
           C+C+P GS   T  CD   GQCECK NV G +C
Sbjct: 1   CDCDPGGSASGT--CDPDTGQCECKPNVTGRRC 31


>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V).  This
           family is like pfam00008 but has 8 conserved cysteines
           instead of six.
          Length = 49

 Score = 45.8 bits (109), Expect = 3e-07
 Identities = 24/49 (48%), Positives = 30/49 (61%), Gaps = 1/49 (2%)

Query: 57  CNCNPIGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSC 104
           C+CNP GSL+  C+ E G+C CKPGVTG  CDRC   +Y       + C
Sbjct: 1   CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49



 Score = 36.9 bits (86), Expect = 4e-04
 Identities = 20/45 (44%), Positives = 25/45 (55%), Gaps = 1/45 (2%)

Query: 170 HGGSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSC 213
             GSL+  C+ E G+C CKPGVTG  CDRC   +Y       + C
Sbjct: 5   PHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49



 Score = 33.5 bits (77), Expect = 0.008
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 2/33 (6%)

Query: 213 CECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
           C+CNP GS+  +  CD   GQC CK  V G  C
Sbjct: 1   CDCNPHGSL--SDTCDPETGQCLCKPGVTGRHC 31


>gnl|CDD|184435 PRK13980, PRK13980, NAD synthetase; Provisional.
          Length = 265

 Score = 29.8 bits (68), Expect = 1.0
 Identities = 10/21 (47%), Positives = 12/21 (57%), Gaps = 3/21 (14%)

Query: 45  YYQKSGDNFCTACNCNPIGSL 65
           Y+ K GD    A + NPIG L
Sbjct: 148 YFTKYGDG---AVDLNPIGDL 165


>gnl|CDD|165214 PHA02887, PHA02887, EGF-like protein; Provisional.
          Length = 126

 Score = 28.0 bits (62), Expect = 2.4
 Identities = 16/49 (32%), Positives = 23/49 (46%), Gaps = 10/49 (20%)

Query: 39  EKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCD 87
           EKC++++     ++FC    C  I  L      E  C C  G TG +CD
Sbjct: 84  EKCKNDF-----NDFCINGECMNIIDL-----DEKFCICNKGYTGIRCD 122


>gnl|CDD|128366 smart00051, DSL, delta serrate ligand. 
          Length = 63

 Score = 26.5 bits (59), Expect = 3.3
 Identities = 12/47 (25%), Positives = 18/47 (38%), Gaps = 3/47 (6%)

Query: 40 KCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKC 86
           C +NYY +  + FC   +       +  C+  G   C  G  G  C
Sbjct: 20 TCDENYYGEGCNKFCRPRDDF---FGHYTCDENGNKGCLEGWMGPYC 63


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.319    0.137    0.479 

Gapped
Lambda     K      H
   0.267   0.0701    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 11,081,237
Number of extensions: 917619
Number of successful extensions: 634
Number of sequences better than 10.0: 1
Number of HSP's gapped: 619
Number of HSP's successfully gapped: 63
Length of query: 247
Length of database: 10,937,602
Length adjustment: 94
Effective length of query: 153
Effective length of database: 6,768,326
Effective search space: 1035553878
Effective search space used: 1035553878
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 58 (26.2 bits)