RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15472
(247 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 91.7 bits (227), Expect = 2e-21
Identities = 71/272 (26%), Positives = 98/272 (36%), Gaps = 29/272 (10%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCL-DCQGDRDGPNCEKCRDNYYQKS-------GDN 52
C C G ++ C + H C+ + G NCE C D Y+ N
Sbjct: 254 CFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSN 313
Query: 53 FCTACNCNPIGS---------LNLQCNSEGRCQ-CKPGVTGDKCDRCDVNHYDFGEAG-- 100
C CNCN S L S G C C+ G C++C ++ E
Sbjct: 314 ACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIR 373
Query: 101 ----CKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIW 156
C+ C C+PAGS R ++H E
Sbjct: 374 DPNLCEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE 433
Query: 157 DLRRCKR-DTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGE--AGCKSC 213
D CK PLG N + G C CK VTG +CD+C H+ GC+ C
Sbjct: 434 DPYGCKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPC 493
Query: 214 ECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
+C+ G++ N+ C GQC C ++ G QC
Sbjct: 494 DCDLGGALNNS--CSEDSGQCSCLPHMIGRQC 523
Score = 89.0 bits (220), Expect = 2e-20
Identities = 73/217 (33%), Positives = 99/217 (45%), Gaps = 31/217 (14%)
Query: 1 CNCNGFSNRCFFDKELYNRTGH--GGHCLDCQGDRDGPNCEKCRDNYYQ-----KSGDNF 53
CNCN S+ C FD ++ TG+ GG C +CQ + G NCE+C+ Y+Q N
Sbjct: 318 CNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNL 377
Query: 54 CTACNCNPIGSLNLQCNSE----------GRCQCKPGVTGDKCDRCDVNHYDFGE---AG 100
C C C+P GS N G+C+CK V G++CD C YD G
Sbjct: 378 CEPCTCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYG 437
Query: 101 CKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRR 160
CKSC CNP G++ CDS G C +L + R Q N + R
Sbjct: 438 CKSCACNPLGTIPGGNPCDSETGYCYCKRLVTGQRCD-----QCLPQHWGLSNDLDGCRP 492
Query: 161 CKRDTYPLGHGGSLNLQCNSE-GRCQCKPGVTGDKCD 196
C D GG+LN C+ + G+C C P + G +C+
Sbjct: 493 CDCD-----LGGALNNSCSEDSGQCSCLPHMIGRQCN 524
Score = 76.7 bits (188), Expect = 3e-16
Identities = 58/251 (23%), Positives = 80/251 (31%), Gaps = 35/251 (13%)
Query: 28 DCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN---------PIGSLNLQCNSEGRCQCK 78
+ E YY C C + ++ G C C+
Sbjct: 225 TLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCR 284
Query: 79 PGVTGDKCDRCDVNHYD--------FGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQL 130
G C+ C ++D CK C CN S + + S +
Sbjct: 285 HNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGV 344
Query: 131 SSRGRVHTELRVQSRKN---FDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSE------ 181
+ +T R + F I D C+ GS N
Sbjct: 345 CDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEP--CTCDPAGSENGGICDGYTDFSV 402
Query: 182 ----GRCQCKPGVTGDKCDRCDVNHYDFGE---AGCKSCECNPAGSVKNTPNCDSVKGQC 234
G+C+CK V G++CD C YD GCKSC CNP G++ CDS G C
Sbjct: 403 GLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETGYC 462
Query: 235 ECKDNVEGAQC 245
CK V G +C
Sbjct: 463 YCKRLVTGQRC 473
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 67.5 bits (164), Expect = 3e-13
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN 60
C+CNG S C+FD ELY TGHGGHC +C+ + DG CE+CR+N+++ C+ +
Sbjct: 311 CDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAH 370
Query: 61 PIGS 64
Sbjct: 371 HHHH 374
Score = 63.2 bits (153), Expect = 8e-12
Identities = 27/127 (21%), Positives = 43/127 (33%), Gaps = 23/127 (18%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQK-------SGDNF 53
C CNG ++ C ++ +C+ + G +CEKC + + +
Sbjct: 255 CKCNGHASECVKNEF-------DKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASE 307
Query: 54 CTACNCNPIGS-------LNLQCNSEGRCQ-CKPGVTGDKCDRCDVNHYDFGEA-GCKSC 104
C C+CN L G C C+ G KC+RC N + G C
Sbjct: 308 CLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPA 367
Query: 105 ECNPAGS 111
+
Sbjct: 368 AAHHHHH 374
Score = 52.5 bits (125), Expect = 3e-08
Identities = 34/199 (17%), Positives = 52/199 (26%), Gaps = 50/199 (25%)
Query: 25 HCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGR-CQCKPGVTG 83
+ L+ GD + + YY S C CN S ++ + C CK G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 84 DKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQ 143
C++C D + + +C+ +C
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASEC----LPCDCNGRSQEC------------------ 320
Query: 144 SRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQ-CKPGVTGDKCDRCDVNH 202
FDP L G C C+ G KC+RC N
Sbjct: 321 ---YFDPE----------------------LYRSTGHGGHCTNCRDNTDGAKCERCRENF 355
Query: 203 YDFGEA-GCKSCECNPAGS 220
+ G C +
Sbjct: 356 FRLGNTEACSPAAAHHHHH 374
Score = 36.3 bits (83), Expect = 0.006
Identities = 21/90 (23%), Positives = 29/90 (32%), Gaps = 13/90 (14%)
Query: 169 GHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDF--------GEAGCKSCECNPAGS 220
GH + C CK G C++C D + C C+CN
Sbjct: 259 GHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQ 318
Query: 221 V----KNTPNCDSVKGQC-ECKDNVEGAQC 245
G C C+DN +GA+C
Sbjct: 319 ECYFDPELYRSTGHGGHCTNCRDNTDGAKC 348
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 61.8 bits (150), Expect = 3e-12
Identities = 30/103 (29%), Positives = 47/103 (45%), Gaps = 11/103 (10%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYY----QKSGDNFCTA 56
C CN + N G CL C + G C++C++ ++ + + C A
Sbjct: 56 CQCNDNIDPNAVG----NCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKA 111
Query: 57 CNCNPIGSLNLQCN---SEGRCQCKPGVTGDKCDRCDVNHYDF 96
C CNP G++ Q + G+CQC P V+G C CD +Y+
Sbjct: 112 CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL 154
Score = 61.0 bits (148), Expect = 7e-12
Identities = 41/140 (29%), Positives = 51/140 (36%), Gaps = 20/140 (14%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGD-----NFCT 55
C C G S+ K C C G CE C D Y+ C
Sbjct: 1 CPCPGGSSCAIVPK------TKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCR 54
Query: 56 ACNCNPIGSLNL--QCNSE-GRC-QCKPGVTGDKCDRCDVNHYDF-----GEAGCKSCEC 106
C CN N CN G C +C G CDRC + CK+C C
Sbjct: 55 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACAC 114
Query: 107 NPAGSVKNTPNCDSVKGQCE 126
NP G+V+ +C+ V GQC+
Sbjct: 115 NPYGTVQQQSSCNPVTGQCQ 134
Score = 52.1 bits (125), Expect = 1e-08
Identities = 34/158 (21%), Positives = 59/158 (37%), Gaps = 13/158 (8%)
Query: 57 CNCNPIGSLNLQCNSEGR--CQCKPGVTGDKCDRCDVNHYDFGEAG------CKSCECNP 108
C C S + ++ C G G +C+ CD ++ C+ C+CN
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 109 AGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKR-DTYP 167
NC+ + G+C ++ G + + + ++ F +CK P
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGF-YCD---RCKEGFFGNPLAPNPADKCKACACNP 116
Query: 168 LGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDF 205
G + G+CQC P V+G C CD +Y+
Sbjct: 117 YGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL 154
Score = 49.8 bits (119), Expect = 6e-08
Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Query: 184 CQCKPGVTGDKCDRCDVNHYDF-----GEAGCKSCECNPAGSVKNTPNCDSVKGQCECKD 238
+C G CDRC + CK+C CNP G+V+ +C+ V GQC+C
Sbjct: 78 LKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQCLP 137
Query: 239 NVEGAQC 245
+V G C
Sbjct: 138 HVSGRDC 144
Score = 41.7 bits (98), Expect = 4e-05
Identities = 18/69 (26%), Positives = 28/69 (40%), Gaps = 7/69 (10%)
Query: 184 CQCKPGVTGDKCDRCDVNHYDFGEAG------CKSCECNPAGSVKNTPNCDSVKGQC-EC 236
C G G +C+ CD ++ C+ C+CN NC+ + G+C +C
Sbjct: 21 THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKC 80
Query: 237 KDNVEGAQC 245
N G C
Sbjct: 81 IYNTAGFYC 89
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 55.2 bits (132), Expect = 4e-09
Identities = 39/232 (16%), Positives = 60/232 (25%), Gaps = 60/232 (25%)
Query: 14 KELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEG 73
++ + T L + +Y S C CN ++ + NS+
Sbjct: 254 RDFFTVTDLRIRLLRPAVGEIFVDELHLARYFYAISDIKVRGRCKCNLHATVCVYDNSKL 313
Query: 74 RCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSR 133
C+C+ TG C +C N+ + S P G+ S G
Sbjct: 314 TCECEHNTTGPDCGKCKKNYQGRPWSPG-SYLPIPKGAANACIPSISSIGTNV------- 365
Query: 134 GRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGD 193
C + +GG C++ RC C TG
Sbjct: 366 ---------------------------CDNELLHCQNGG----TCHNNVRCLCPAAYTGI 394
Query: 194 KCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
C++ C AGS C S GQ
Sbjct: 395 LCEKLR---------------CEEAGS------CGSDSGQGAPPHGTHHHHH 425
Score = 46.0 bits (108), Expect = 5e-06
Identities = 22/131 (16%), Positives = 39/131 (29%), Gaps = 30/131 (22%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQK------------ 48
C CN + C +D + +C+ + GP+C KC+ NY +
Sbjct: 297 CKCNLHATVCVYD--------NSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPK 348
Query: 49 SGDNFCTACNCNPIGSLNL----------QCNSEGRCQCKPGVTGDKCDRCDVNHYDFGE 98
N C + ++ C++ RC C TG C++
Sbjct: 349 GAANACIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLRCEEAGSCG 408
Query: 99 AGCKSCECNPA 109
+
Sbjct: 409 SDSGQGAPPHG 419
Score = 40.2 bits (93), Expect = 4e-04
Identities = 15/85 (17%), Positives = 19/85 (22%), Gaps = 21/85 (24%)
Query: 1 CNCNGFSNRCFFDKELYNRTG--HGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACN 58
+ +N C + G H C G CEK R
Sbjct: 357 SISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKLR---------------- 400
Query: 59 CNPIGSLNLQCNSEGRCQCKPGVTG 83
C GS G+ G
Sbjct: 401 CEEAGSCGSDS---GQGAPPHGTHH 422
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 49.5 bits (117), Expect = 4e-07
Identities = 21/138 (15%), Positives = 41/138 (29%), Gaps = 34/138 (24%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQK------------ 48
C C+G ++ C + CQ + G +C++C + Q+
Sbjct: 266 CVCHGHADVCDAK----DPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANE 321
Query: 49 ----SGDNFCTACNCNP-------IGSLNLQCNSEGRCQ-CKPGVTGDKCDRCDVNHYDF 96
+ C +P + + G C C+ TG C+RC +
Sbjct: 322 CQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRA 381
Query: 97 GEAG------CKSCECNP 108
+ C+ +
Sbjct: 382 PDQPLDSPHVCRPAAAHH 399
Score = 47.2 bits (111), Expect = 2e-06
Identities = 24/204 (11%), Positives = 43/204 (21%), Gaps = 49/204 (24%)
Query: 25 HCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNP----IGSLNLQCNSEGRCQCKPG 80
L + + R YY + C C+ + + +C C+
Sbjct: 234 TLLGHLMGKALRDPTVTRRYYYSIKDISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHN 293
Query: 81 VTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTEL 140
G CDRC + N S +
Sbjct: 294 TCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYD-------------------- 333
Query: 141 RVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQ-CKPGVTGDKCDRCD 199
+ + + G C C+ TG C+RC
Sbjct: 334 ------------------CYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCL 375
Query: 200 VNHYDFGEAG------CKSCECNP 217
+ + C+ +
Sbjct: 376 PGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 28.3 bits (62), Expect = 2.3
Identities = 16/91 (17%), Positives = 23/91 (25%), Gaps = 22/91 (24%)
Query: 177 QCNSEGRCQCKPGVTGDKCDRCDVNHYDFG-----------------EAGCKSCECNPAG 219
+C C+ G CDRC C +P
Sbjct: 281 LDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEV 340
Query: 220 SVK----NTPNCDSVKGQC-ECKDNVEGAQC 245
+ N N G C +C+ + G C
Sbjct: 341 DRREASQNQDNVYQGGGVCLDCQHHTTGINC 371
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 42.2 bits (98), Expect = 8e-05
Identities = 20/120 (16%), Positives = 29/120 (24%), Gaps = 13/120 (10%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN 60
N KE + T L E +Y S C CN
Sbjct: 214 DNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAISNIEVIGRCKCN 273
Query: 61 PIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDF-------------GEAGCKSCECN 107
+L +C+C+ TG C +C N C + +
Sbjct: 274 LHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 28.0 bits (61), Expect = 3.5
Identities = 8/53 (15%), Positives = 14/53 (26%), Gaps = 13/53 (24%)
Query: 177 QCNSEGRCQCKPGVTGDKCDRCDVNHYDF-------------GEAGCKSCECN 216
+C+C+ TG C +C N C + +
Sbjct: 281 MREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
Score = 26.8 bits (58), Expect = 6.5
Identities = 12/71 (16%), Positives = 21/71 (29%), Gaps = 5/71 (7%)
Query: 175 NLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQC 234
+L+ V + + + C+CN + + QC
Sbjct: 234 DLRMRLLRPALGGTYVQRENLYKYFYAISNIEV--IGRCKCNLHAN---LCSMREGSLQC 288
Query: 235 ECKDNVEGAQC 245
EC+ N G C
Sbjct: 289 ECEHNTTGPDC 299
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 37.3 bits (86), Expect = 8e-04
Identities = 13/89 (14%), Positives = 21/89 (23%), Gaps = 12/89 (13%)
Query: 33 RDGPNCEKCRDNYY-------QKSGDNFCTACNCNPIGSLNLQC--NSEGRCQCKPGVTG 83
C + C+ +C CK +
Sbjct: 29 SGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMMCSRLTNKCDCKIDIN- 87
Query: 84 DKCDRCDVNHYDFGEAGCKSCECNPAGSV 112
C + N + GC+ CEC P +
Sbjct: 88 --CRKTCPNGLKRDKLGCEYCECRPKRKL 114
Score = 33.5 bits (76), Expect = 0.015
Identities = 18/122 (14%), Positives = 34/122 (27%), Gaps = 9/122 (7%)
Query: 100 GCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLR 159
C AG + + C+ + +C + G +
Sbjct: 2 DPFGPGCEEAGCPEGSA-CNIITDRC-----TCSGVRCRVHCPHGFQRSRYGCEFCKCRL 55
Query: 160 RCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAG 219
+ T + + +C CK + C + N + GC+ CEC P
Sbjct: 56 EPMKATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYCECRPKR 112
Query: 220 SV 221
+
Sbjct: 113 KL 114
Score = 29.2 bits (65), Expect = 0.57
Identities = 9/69 (13%), Positives = 19/69 (27%), Gaps = 6/69 (8%)
Query: 182 GRCQCKPGVTGDKC-----DRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCEC 236
RC C C + C+ + + C + +C+C
Sbjct: 24 DRCTCSGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGMM-CSRLTNKCDC 82
Query: 237 KDNVEGAQC 245
K ++ +
Sbjct: 83 KIDINCRKT 91
Score = 27.7 bits (61), Expect = 1.7
Identities = 11/79 (13%), Positives = 17/79 (21%), Gaps = 8/79 (10%)
Query: 54 CTACNCNPIGSL-NLQCNSE-GRCQCKPGVTGDKC-----DRCDVNHYDFGEAGCKSCEC 106
C G CN RC C C + C
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCSGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKATC 62
Query: 107 NPAGSVKNTPNCDSVKGQC 125
+ + + C + +C
Sbjct: 63 DISECPEGMM-CSRLTNKC 80
Score = 25.8 bits (56), Expect = 7.5
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 1/38 (2%)
Query: 209 GCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCR 246
C AG + + C+ + +C C C
Sbjct: 2 DPFGPGCEEAGCPEGSA-CNIITDRCTCSGVRCRVHCP 38
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 34.9 bits (79), Expect = 0.013
Identities = 11/72 (15%), Positives = 16/72 (22%)
Query: 23 GGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVT 82
G + C C CN C+C G
Sbjct: 115 GVAAFEVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNERRICECPDGFH 174
Query: 83 GDKCDRCDVNHY 94
G C+ +H+
Sbjct: 175 GPHCEGTKHHHH 186
Score = 26.8 bits (58), Expect = 5.6
Identities = 8/26 (30%), Positives = 12/26 (46%)
Query: 178 CNSEGRCQCKPGVTGDKCDRCDVNHY 203
CN C+C G G C+ +H+
Sbjct: 161 CNERRICECPDGFHGPHCEGTKHHHH 186
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 35.4 bits (81), Expect = 0.017
Identities = 50/259 (19%), Positives = 74/259 (28%), Gaps = 50/259 (19%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN 60
C C + N T G C C G CE C + Y+ S + C+
Sbjct: 435 CACQAQAEPNSHRCNNGNGTFECGVC-RCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQ 492
Query: 61 PIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDS 120
P+ S +C G+C C G K CEC+ V+ S
Sbjct: 493 PVCSQRGECLC-GQCVCHSSDFGKITG--------------KYCECDDFSCVRYKGEMCS 537
Query: 121 VKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNS 180
GQC + W C T S L C+
Sbjct: 538 GHGQCSCGDCLC-----------------DSD---WTGYYCNCTTRTDTCMSSNGLLCSG 577
Query: 181 EGRCQC------KPGVTGDKCDRCDVNHYDFGEAG-CKSCECNPAGSVKNTPNCDS---- 229
G+C+C +PG GD C++C C C+ G++ + C+
Sbjct: 578 RGKCECGSCVCIQPGSYGDTCEKCPTCPDACTFKKECVECKKFDRGALHDENTCNRYCRD 637
Query: 230 --VKGQCECKDNVEGAQCR 246
+ + C
Sbjct: 638 EIESVKELKDTGKDAVNCT 656
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 34.2 bits (78), Expect = 0.029
Identities = 13/43 (30%), Positives = 20/43 (46%)
Query: 52 NFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHY 94
+FC C P C +C CK G G +C++ D +H+
Sbjct: 419 DFCRTAKCEPACRHGGVCVRPNKCLCKKGYLGPQCEQVDHHHH 461
Score = 31.9 bits (72), Expect = 0.21
Identities = 23/74 (31%), Positives = 28/74 (37%), Gaps = 24/74 (32%)
Query: 175 NLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPA---GSVKNTPNCDSVK 231
N C G+C C PG GD C++ +C PA G V PN
Sbjct: 401 NGYCTPTGKCCCSPGWEGDF---------------CRTAKCEPACRHGGVCVRPN----- 440
Query: 232 GQCECKDNVEGAQC 245
+C CK G QC
Sbjct: 441 -KCLCKKGYLGPQC 453
Score = 28.4 bits (63), Expect = 2.5
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 4/34 (11%)
Query: 170 HGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHY 203
HGG C +C CK G G +C++ D +H+
Sbjct: 432 HGGV----CVRPNKCLCKKGYLGPQCEQVDHHHH 461
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 32.8 bits (74), Expect = 0.11
Identities = 23/178 (12%), Positives = 38/178 (21%), Gaps = 26/178 (14%)
Query: 70 NSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQ 129
C GVT R D + + ++ G
Sbjct: 357 KVTYDSFCSNGVTHRNQPRGDCDGVQINVPITFQVKVTATECIQEQSFVIRALGFT---- 412
Query: 130 LSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPG 189
D ++ C+ G C+C G
Sbjct: 413 -------------------DIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTG 453
Query: 190 VTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQCRS 247
G C+ + SC + + + D V GQC C + +
Sbjct: 454 YIGKNCECQ--TQGRSSQELEGSCRKDNNSIICSG-LGDCVCGQCLCHTSDVPGKLIY 508
Score = 32.0 bits (72), Expect = 0.19
Identities = 33/204 (16%), Positives = 49/204 (24%), Gaps = 37/204 (18%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN 60
C C G C C G NCE + + C N +
Sbjct: 423 CECRCRDQSRDRSLCHGKGFLECGIC-RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNS 481
Query: 61 PIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDS 120
I S C G+C C K + + E +CE
Sbjct: 482 IICSGLGDCVC-GQCLCHTSDVPGKL-----IYGQYCECDTINCERYNGQVCGGPGRGLC 535
Query: 121 VKGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNS 180
G+C G ++ C+ + G ++C+
Sbjct: 536 FCGKCRC----------------------HPG---FEGSACQCERTTEGCLNPRRVECSG 570
Query: 181 EG-----RCQCKPGVTGDKCDRCD 199
G C+C G C C
Sbjct: 571 RGRCRCNVCECHSGYQLPLCQECP 594
Score = 30.1 bits (67), Expect = 0.83
Identities = 10/63 (15%), Positives = 15/63 (23%)
Query: 28 DCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCD 87
C C K + K+ C + C C T ++ D
Sbjct: 599 PCGKYISCAECLKFEKGPFGKNCSAACPGLQLSNNPVKGRTCKERDSEGCWVAYTLEQQD 658
Query: 88 RCD 90
D
Sbjct: 659 GMD 661
Score = 28.9 bits (64), Expect = 1.9
Identities = 32/224 (14%), Positives = 50/224 (22%), Gaps = 28/224 (12%)
Query: 22 HGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGV 81
+ + C + + G C+C G
Sbjct: 395 ATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQSRDRSLCHGKGFLECGICRCDTGY 454
Query: 82 TGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTELR 141
G C+ + SC + + + D V GQC G++
Sbjct: 455 IGKNCECQ--TQGRSSQELEGSCRKDNNSIICSG-LGDCVCGQCLCHTSDVPGKLIYGQY 511
Query: 142 VQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSEGRCQCKPGVTGDKCDRCDVN 201
+ R + G G G+C+C PG G C
Sbjct: 512 CECDTINCE--------RYNGQVCGGPGRGLCFC------GKCRCHPGFEGSACQC---- 553
Query: 202 HYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
E + C C CEC + C
Sbjct: 554 -----ERTTEGCLNPRRVECSGRGRCRC--NVCECHSGYQLPLC 590
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 31.6 bits (71), Expect = 0.24
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 3/64 (4%)
Query: 182 GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVE 241
G C C PG G C++ + FG + C + C C C +
Sbjct: 216 GECICPPGFMGRTCEK-ACELHTFGRTCKERCSGQEGCK--SYVFCLPDPYGCSCATGWK 272
Query: 242 GAQC 245
G QC
Sbjct: 273 GLQC 276
Score = 31.2 bits (70), Expect = 0.29
Identities = 16/99 (16%), Positives = 25/99 (25%), Gaps = 6/99 (6%)
Query: 29 CQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDR 88
C G C + + G + C+CN C+ C C PG G +C+R
Sbjct: 267 CATGWKGLQCNEACHPGF--YGPDCKLRCSCNNGEM----CDRFQGCLCSPGWQGLQCER 320
Query: 89 CDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCES 127
+ +G
Sbjct: 321 EGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNE 359
Score = 29.7 bits (66), Expect = 0.92
Identities = 37/235 (15%), Positives = 61/235 (25%), Gaps = 29/235 (12%)
Query: 3 CNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPI 62
+ D +Y+ GG+ +C + ++ CTAC N +
Sbjct: 153 EVHLPHAQPQDAGVYSARYIGGNL--FTSAFTRLIVRRCEAQKWGPECNHLCTACMNNGV 210
Query: 63 GSLNLQCNSE-GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSV 121
C+ + G C C PG G C++ + FG + C + C
Sbjct: 211 ------CHEDTGECICPPGFMGRTCEK-ACELHTFGRTCKERCSGQEGCK--SYVFCLPD 261
Query: 122 KGQCESAQLSSRGRVHTELRVQSRKNFDPAGNRIWDLRRCKRDTYPLGHGGSLNLQCNSE 181
C A L+ + G C +G C+
Sbjct: 262 PYGCSCATG------WKGLQCNEACHPGFYGPDCKLRCSCN-------NGEM----CDRF 304
Query: 182 GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCEC 236
C C PG G +C+R + +G
Sbjct: 305 QGCLCSPGWQGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASGWPLPTNE 359
Score = 27.4 bits (60), Expect = 5.2
Identities = 14/64 (21%), Positives = 19/64 (29%), Gaps = 8/64 (12%)
Query: 182 GRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCECKDNVE 241
C C G G +C+ + +G C CN C C +
Sbjct: 263 YGCSCATGWKGLQCN-EACHPGFYGPDCKLRCSCNNGEMCDRF-------QGCLCSPGWQ 314
Query: 242 GAQC 245
G QC
Sbjct: 315 GLQC 318
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.4 bits (68), Expect = 0.70
Identities = 32/230 (13%), Positives = 59/230 (25%), Gaps = 93/230 (40%)
Query: 84 DKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSV-----KGQ-------------C 125
++ D + Y F + V N P ++ KG+
Sbjct: 1647 NRADNHFKDTYGF----------SILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETI 1696
Query: 126 ESAQLSSRGRVHTELRVQSRK-NF-DPAG--NR--------------IW-DLRR---CKR 163
+L + ++ E+ S F G + + DL+
Sbjct: 1697 VDGKLKTE-KIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPA 1755
Query: 164 DTYPLGH-----------GGSLNLQCNSEG------RCQCKPGVTGDKCDRCDVNHYDFG 206
D GH +++ R G+T V + G
Sbjct: 1756 DATFAGHSLGEYAALASLADVMSI---ESLVEVVFYR-----GMTMQVA----VPRDELG 1803
Query: 207 EAGCKSCECNPAGSVKNTPNCDSVKGQCECK------------DNVEGAQ 244
+ NP G V + + ++++ E NVE Q
Sbjct: 1804 RSNYGMIAINP-GRVAASFSQEALQYVVERVGKRTGWLVEIVNYNVENQQ 1852
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 29.6 bits (65), Expect = 1.1
Identities = 11/57 (19%), Positives = 18/57 (31%)
Query: 42 RDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGE 98
+ DN C + + C + +C C PG +G C N +
Sbjct: 171 GSQPVTWAIDNVYIGPQCEEMCYGHGSCINGTKCICDPGYSGPTCKISTKNPDFLKD 227
>1mox_A Epidermal growth factor receptor; EGFR, receptor, complex,
transferase-growth F complex; HET: NAG FUC BMA MAN;
2.50A {Homo sapiens} SCOP: c.10.2.5 c.10.2.5 g.3.9.1
g.3.9.1
Length = 501
Score = 29.1 bits (64), Expect = 1.5
Identities = 19/125 (15%), Positives = 31/125 (24%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYYQKSGDNFCTACNCN 60
C S+ C CL C+ RD C+ + + N
Sbjct: 199 CRGKSPSDCCHNQCAAGCTGPRESDCLVCRKFRDEATCKDTCPPLMLYNPTTYQMDVNPE 258
Query: 61 PIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDS 120
S C + G C + Y+ E G + C+ K
Sbjct: 259 GKYSFGATCVKKCPRNYVVTDHGSCVRACGADSYEMEEDGVRKCKKCEGPCRKVCNGIGI 318
Query: 121 VKGQC 125
+ +
Sbjct: 319 GEFKD 323
>3nxp_A Prethrombin-1; allostery, blood coagulation, hydro kringle, serine
protease, zymogen; HET: NAG; 2.20A {Homo sapiens}
Length = 424
Score = 28.7 bits (64), Expect = 2.0
Identities = 15/110 (13%), Positives = 28/110 (25%), Gaps = 8/110 (7%)
Query: 25 HCLDCQGDRDGPNCEKCRDN-YYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTG 83
C + GD +G C + N+C G E + G T
Sbjct: 63 FCRNPDGDEEGVWCYVAGKPGDFGYCDLNYCEEAVEEETG----DGLDEDSDRAIEGAT- 117
Query: 84 DKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSR 133
++ G +C + D + + + + R
Sbjct: 118 --ATSEYQTFFNPATFGSGEADCGLRPLFEKKSLEDKTERELLESYIDGR 165
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 28.7 bits (63), Expect = 2.0
Identities = 20/140 (14%), Positives = 30/140 (21%), Gaps = 16/140 (11%)
Query: 21 GHGGHCLDCQGDRDGPNC-EKCRDNYYQKSGDN-----FCTACNCNPIGSLNLQCNS--- 71
C+ C+ C E C YY FC + S C+
Sbjct: 220 DDPTKCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQDLHHKCKNSRRQGCHQYVI 279
Query: 72 -EGRC--QCKPGVTGDK----CDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQ 124
+C +C G T + C C + S + C + G
Sbjct: 280 HNNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQELRGCTVINGS 339
Query: 125 CESAQLSSRGRVHTELRVQS 144
Sbjct: 340 LIINIRGGNNLAAELEANLG 359
>1gl4_A Nidogen-1, entactin; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: d.22.1.2
g.3.11.5 PDB: 1h4u_A
Length = 285
Score = 26.6 bits (58), Expect = 7.2
Identities = 10/63 (15%), Positives = 19/63 (30%), Gaps = 4/63 (6%)
Query: 170 HGGSLNLQC-NSEG--RCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPN 226
H S++ +C + C+C TG+ +C G S
Sbjct: 13 HQCSVHAECRDYATGFCCRCVANYTGN-GRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVF 71
Query: 227 CDS 229
++
Sbjct: 72 ENT 74
Score = 26.6 bits (58), Expect = 7.8
Identities = 11/66 (16%), Positives = 20/66 (30%), Gaps = 4/66 (6%)
Query: 75 CQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRG 134
C+C TG+ +C G S ++ S + + G
Sbjct: 30 CRCVANYTGN-GRQCVAEGSPQRVNGKVKGRIFVGSSQVPVVFENT---DLHSYVVMNHG 85
Query: 135 RVHTEL 140
R +T +
Sbjct: 86 RSYTAI 91
>2f83_A Coagulation factor XI; protease, apple domain, hydrolase; HET: NAG;
2.87A {Homo sapiens} PDB: 2j8j_A 2j8l_A
Length = 625
Score = 26.7 bits (59), Expect = 9.1
Identities = 15/100 (15%), Positives = 27/100 (27%), Gaps = 6/100 (6%)
Query: 1 CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEK-CRDNYYQ-----KSGDNFC 54
S F Y+ T G LD + C+K C + C
Sbjct: 280 LQSCRHSIPVFCHSSFYHDTDFLGEELDIVAAKSHEACQKLCTNAVRCQFFTYTPAQASC 339
Query: 55 TACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHY 94
L+ + + G++G C +++
Sbjct: 340 NEGKGKCYLKLSSNGSPTKILHGRGGISGYTLRLCKMDNE 379
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation,
transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus}
PDB: 1tbn_A 1tbo_A 2e73_A
Length = 674
Score = 26.5 bits (58), Expect = 9.4
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 5/144 (3%)
Query: 12 FDKELYNRTGHGGHCLD--CQGDRDGPNCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQC 69
F + + HC D + G C+ C +++ + +C G +
Sbjct: 40 FTARFFKQPTFCSHCTDFIWGFGKQGFQCQVCSFVVHKRCHEFVTFSCPGADKGPASDDP 99
Query: 70 NSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGSVKNTPNCDSVKGQCESAQ 129
S+ + + + CD C Y G K C + N V C +
Sbjct: 100 RSKHKFKIHTYSSPTFCDHCGSLLYGLIHQGMKCDTCMMNVHKRCVMN---VPSLCGTDH 156
Query: 130 LSSRGRVHTELRVQSRKNFDPAGN 153
RGR++ + + +
Sbjct: 157 TERRGRIYIQAHIDREVLIVVVRD 180
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.319 0.137 0.479
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,765,823
Number of extensions: 229929
Number of successful extensions: 1805
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1117
Number of HSP's successfully gapped: 471
Length of query: 247
Length of database: 6,701,793
Length adjustment: 91
Effective length of query: 156
Effective length of database: 4,160,982
Effective search space: 649113192
Effective search space used: 649113192
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (25.8 bits)