RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15472
         (247 letters)



>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 51

 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 3/43 (6%)

Query: 57 CNCNPIGSLNLQCNSE---GRCQCKPGVTGDKCDRCDVNHYDF 96
          C CNP G++  Q +     G+CQC P V+G  C  CD  +Y+ 
Sbjct: 1  CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNL 43



 Score = 34.1 bits (78), Expect = 0.001
 Identities = 15/33 (45%), Positives = 21/33 (63%)

Query: 213 CECNPAGSVKNTPNCDSVKGQCECKDNVEGAQC 245
           C CNP G+V+   +C+ V GQC+C  +V G  C
Sbjct: 1   CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDC 33



 Score = 28.7 bits (64), Expect = 0.088
 Identities = 11/24 (45%), Positives = 15/24 (62%)

Query: 182 GRCQCKPGVTGDKCDRCDVNHYDF 205
           G+CQC P V+G  C  CD  +Y+ 
Sbjct: 20  GQCQCLPHVSGRDCGTCDPGYYNL 43



 Score = 23.7 bits (51), Expect = 5.4
 Identities = 11/23 (47%), Positives = 16/23 (69%)

Query: 104 CECNPAGSVKNTPNCDSVKGQCE 126
           C CNP G+V+   +C+ V GQC+
Sbjct: 1   CACNPYGTVQQQSSCNPVTGQCQ 23


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 26.4 bits (58), Expect = 0.68
 Identities = 11/34 (32%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 213 CECNPAGSVKNTPNCDSVKGQC-ECKDNVEGAQC 245
           C+CN         NC+ + G+C +C  N  G  C
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYC 34



 Score = 26.0 bits (57), Expect = 0.88
 Identities = 11/46 (23%), Positives = 19/46 (41%), Gaps = 4/46 (8%)

Query: 1  CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYY 46
          C CN   +         N     G CL C  +  G  C++C++ ++
Sbjct: 1  CQCNDNIDPNAVG----NCNRLTGECLKCIYNTAGFYCDRCKEGFF 42



 Score = 26.0 bits (57), Expect = 0.98
 Identities = 12/53 (22%), Positives = 16/53 (30%), Gaps = 4/53 (7%)

Query: 57  CNCNPIGSLNLQCNSEG--RCQCKPGVTGDKCDRCDVNHYDF--GEAGCKSCE 105
           CN N   +    CN       +C     G  CDRC    +           C+
Sbjct: 3   CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCK 55


>d1wbha1 c.1.10.1 (A:1-213) KDPG aldolase {Escherichia coli [TaxId:
           562]}
          Length = 213

 Score = 28.4 bits (63), Expect = 0.69
 Identities = 16/104 (15%), Positives = 33/104 (31%), Gaps = 13/104 (12%)

Query: 37  NCEKCRDNYYQKSGDNFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDF 96
           N ++  +    ++G  F  +          L+  +EG     PG+         V+    
Sbjct: 76  NPQQLAE--VTEAGAQFAISPGLTEPL---LKAATEGTIPLIPGI-------STVSELML 123

Query: 97  G-EAGCKSCECNPAGSVKNTPNCDSVKGQCESAQLSSRGRVHTE 139
           G + G K  +  PA +        ++ G     +    G +   
Sbjct: 124 GMDYGLKEFKFFPAEANGGVKALQAIAGPFSQVRFCPTGGISPA 167


>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 55

 Score = 24.9 bits (54), Expect = 2.0
 Identities = 12/46 (26%), Positives = 14/46 (30%), Gaps = 6/46 (13%)

Query: 1  CNCNGFSNRCFFDKELYNRTGHGGHCLDCQGDRDGPNCEKCRDNYY 46
          C C G S+                 C  C     G  CE C D Y+
Sbjct: 1  CPCPGGSSCAIVP------KTKEVVCTHCPTGTAGKRCELCDDGYF 40


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 25.2 bits (54), Expect = 8.1
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 2/60 (3%)

Query: 52  NFCTACNCNPIGSLNLQCNSEGRCQCKPGVTGDKCDRCDVNHYDFGEAGCKSCECNPAGS 111
           NF + CNC+ +G  +   N+  RC+C   +        D       + G    ECN   S
Sbjct: 63  NFQSGCNCSSLGGCD--LNNPSRCECLDDLDEPTHFAYDAQGRVRADTGAVIYECNSFCS 120


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.319    0.137    0.479 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,005,947
Number of extensions: 55289
Number of successful extensions: 405
Number of sequences better than 10.0: 1
Number of HSP's gapped: 294
Number of HSP's successfully gapped: 139
Length of query: 247
Length of database: 2,407,596
Length adjustment: 83
Effective length of query: 164
Effective length of database: 1,268,006
Effective search space: 207952984
Effective search space used: 207952984
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.1 bits)