BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15473
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/121 (33%), Positives = 60/121 (49%), Gaps = 24/121 (19%)
Query: 50 DDDQVSNLGNRTRIRIKSALG---GNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC 106
D + +N+ R +R + LG G R +TR+ +Y + + + GG RCV
Sbjct: 218 DFTKATNIRLRF-LRTNTLLGHLMGKALRDPTVTRRYYYSIK----DISIGG---RCV-- 267
Query: 107 NCNGHADICDAESG------RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCP 156
C+GHAD+CDA+ +C CQ NT G +C+RC G+ + A TD C+ C
Sbjct: 268 -CHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCN 326
Query: 157 C 157
C
Sbjct: 327 C 327
Score = 31.6 bits (70), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 32/68 (47%), Gaps = 19/68 (27%)
Query: 93 EPTSGGAFSRCVPCNCNGHADIC--DAESGR----------------CI-CQDNTGGDNC 133
+P + + + C CNC+GHA C D E R C+ CQ +T G NC
Sbjct: 312 KPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINC 371
Query: 134 ERCARGYY 141
ERC G++
Sbjct: 372 ERCLPGFF 379
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 5/44 (11%)
Query: 2 FR-RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPC 40
FR +C CQ NT G +C+RC G+ + A TD C+ C C
Sbjct: 284 FRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNC 327
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 7 CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR 64
C T G CE C GY+G+ L G V C+ C C + +D + V N T
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN-----IDPNAVGNCNRLTGEC 77
Query: 65 IKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDAES 119
+K T G R G+ P + +C C CN + + C+ +
Sbjct: 78 LKCIY---NTAGFYCDRCKE----GFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT 130
Query: 120 GRCICQDNTGGDNCERCARGYY 141
G+C C + G +C C GYY
Sbjct: 131 GQCQCLPHVSGRDCGTCDPGYY 152
Score = 40.8 bits (94), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89 GYHHEPT-SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYY 141
GY +P S G C PC CN + D C+ +G C+ C NT G C+RC G++
Sbjct: 38 GYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFF 97
Query: 142 GNALEGAVTD-CKQCPC 157
GN L D CK C C
Sbjct: 98 GNPLAPNPADKCKACAC 114
Score = 27.3 bits (59), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 124 CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPC-----PN--------QGPCVQ--L 166
C T G CE C GY+G+ L G V C+ C C PN G C++
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 82
Query: 167 DDDQVVCSECPRGYGGEKMSP 187
+ C C G+ G ++P
Sbjct: 83 NTAGFYCDRCKEGFFGNPLAP 103
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 42.0 bits (97), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/142 (27%), Positives = 56/142 (39%), Gaps = 19/142 (13%)
Query: 7 CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR 64
C T G CE C GY+G+ L G V C+ C C + +D + V N T
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDN-----IDPNAVGNCNRLTGEC 79
Query: 65 IKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDAES 119
+K T G R G+ P + +C C CN + + C+ +
Sbjct: 80 LKCIY---NTAGFYCDRCKE----GFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVT 132
Query: 120 GRCICQDNTGGDNCERCARGYY 141
G+C C + G +C C GYY
Sbjct: 133 GQCQCLPHVSGRDCGTCDPGYY 154
Score = 40.8 bits (94), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 30/77 (38%), Positives = 38/77 (49%), Gaps = 8/77 (10%)
Query: 89 GYHHEPT-SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYY 141
GY +P S G C PC CN + D C+ +G C+ C NT G C+RC G++
Sbjct: 40 GYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFF 99
Query: 142 GNALEGAVTD-CKQCPC 157
GN L D CK C C
Sbjct: 100 GNPLAPNPADKCKACAC 116
Score = 26.9 bits (58), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 124 CQDNTGGDNCERCARGYYGNAL--EGAVTDCKQCPC-----PN--------QGPCVQ--L 166
C T G CE C GY+G+ L G V C+ C C PN G C++
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIY 84
Query: 167 DDDQVVCSECPRGYGGEKMSP 187
+ C C G+ G ++P
Sbjct: 85 NTAGFYCDRCKEGFFGNPLAP 105
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 36.2 bits (82), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 69/164 (42%), Gaps = 29/164 (17%)
Query: 7 CQDNTGGDNCERCARGYYGNALEGAVTD---CKQCPC-----PNQGPCVQLDDDQVSNLG 58
CQ NT G NCE+C + +Y E + D C+ C C N G C D V +
Sbjct: 348 CQHNTMGRNCEQC-KPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLIA 406
Query: 59 NRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI---- 114
+ R ++ + G R + ++ Y L+ E G C C CN I
Sbjct: 407 GQCRCKLH--VEGERCD---VCKEGFYDLSA---EDPYG-----CKSCACNPLGTIPGGN 453
Query: 115 -CDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPC 157
CD+E+G C C+ G C++C ++G L + C+ C C
Sbjct: 454 PCDSETGYCYCKRLVTGQRCDQCLPQHWG--LSNDLDGCRPCDC 495
Score = 33.9 bits (76), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 52/139 (37%), Gaps = 19/139 (13%)
Query: 45 PCVQLDDD---QVSNLGNRTRIRIKSA----LGGNRTRGLALTRQTHYQLTGYHHEPTSG 97
P +++D ++ NL T +RIK LG N R+ +Y + G
Sbjct: 195 PAFKIEDPYSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYYY--AVYDMVVRG 252
Query: 98 GAF-----SRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA---- 148
F S C P + + ++ G C+C+ NT G NCE C Y+ A
Sbjct: 253 NCFCYGHASECAPVD-GVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRN 311
Query: 149 VTDCKQCPCPNQGPCVQLD 167
CK+C C D
Sbjct: 312 SNACKKCNCNEHSSSCHFD 330
Score = 33.9 bits (76), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 41/170 (24%), Positives = 61/170 (35%), Gaps = 22/170 (12%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGA----VTDCKQCPCPNQGPCVQLDDDQVSNLGN 59
C+C+ NT G NCE C Y+ A CK+C C D GN
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339
Query: 60 RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCN----GHADIC 115
+ + R + ++Q H + C PC C+ + IC
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQ-----HPERDIRDPNLCEPCTCDPAGSENGGIC 394
Query: 116 DAES--------GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPC 157
D + G+C C+ + G+ C+ C G+Y + E CK C C
Sbjct: 395 DGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCAC 443
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 34.3 bits (77), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 10/51 (19%)
Query: 101 SRCVPCNCNGHADIC--DAESGRCI--------CQDNTGGDNCERCARGYY 141
S C+PC+CNG + C D E R C+DNT G CERC ++
Sbjct: 306 SECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFF 356
Score = 30.4 bits (67), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 7/59 (11%)
Query: 106 CNCNGHADIC---DAESGRCICQDNTGGDNCERCARGY----YGNALEGAVTDCKQCPC 157
C CNGHA C + + C C+ NT G +CE+C + + A + ++C C C
Sbjct: 255 CKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC 313
>pdb|3T5O|A Chain A, Crystal Structure Of Human Complement Component C6
pdb|4A5W|B Chain B, Crystal Structure Of C5b6
pdb|4E0S|B Chain B, Crystal Structure Of C5b-6
Length = 913
Score = 33.9 bits (76), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 102 RCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEG 147
+C PC NG + E C+CQ T G+NCE+ + Y NA++G
Sbjct: 501 QCAPCPNNGRPTLSGTEC-LCVCQSGTYGENCEKQSPDYKSNAVDG 545
Score = 29.6 bits (65), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 12/26 (46%), Positives = 18/26 (69%)
Query: 5 CICQDNTGGDNCERCARGYYGNALEG 30
C+CQ T G+NCE+ + Y NA++G
Sbjct: 520 CVCQSGTYGENCEKQSPDYKSNAVDG 545
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At Ph
3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 32.7 bits (73), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/53 (37%), Positives = 27/53 (50%), Gaps = 6/53 (11%)
Query: 105 PCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAVTD 151
PC CN + D C+ +G C+ C NT G C+RC G++GN L D
Sbjct: 2 PCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPAD 54
Score = 26.9 bits (58), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 7 CQDNTGGDNCERCARGYYGNALEGAVTD 34
C NT G C+RC G++GN L D
Sbjct: 27 CIYNTAGFYCDRCKEGFFGNPLAPNPAD 54
>pdb|3ZYG|A Chain A, Netring2 Lam And Egf1 Domains
pdb|3ZYG|B Chain B, Netring2 Lam And Egf1 Domains
pdb|3ZYI|B Chain B, Netring2 In Complex With Ngl2
Length = 353
Score = 32.7 bits (73), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 60 RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAES 119
R R+ ++ ALGG + R+ Y+ Y + ++ RC CN HA++C
Sbjct: 253 RMRL-LRPALGGTYVQ-----RENLYK---YFYAISNIEVIGRC---KCNLHANLCSMRE 300
Query: 120 G--RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP 162
G +C C+ NT G +C +C + + + P P+ P
Sbjct: 301 GSLQCECEHNTTGPDCGKCKKNFRTRSWRAG----SYLPLPHGSP 341
>pdb|3ZYJ|B Chain B, Netring1 In Complex With Ngl1
pdb|3ZYJ|D Chain D, Netring1 In Complex With Ngl1
Length = 426
Score = 32.3 bits (72), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 106 CNCNGHADICDAESGR--CICQDNTGGDNCERCARGYYG 142
C CN HA +C ++ + C C+ NT G +C +C + Y G
Sbjct: 297 CKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQG 335
>pdb|3TBD|A Chain A, Crystal Structure Of Domain Vi And Le1 Of Human Netrin-G2
Length = 338
Score = 32.3 bits (72), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 27/105 (25%), Positives = 46/105 (43%), Gaps = 18/105 (17%)
Query: 60 RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAES 119
R R+ ++ ALGG + R+ Y+ Y + ++ RC CN HA++C
Sbjct: 236 RMRL-LRPALGGTYVQ-----RENLYK---YFYAISNIEVIGRC---KCNLHANLCSMRE 283
Query: 120 G--RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP 162
G +C C+ NT G +C +C + + + P P+ P
Sbjct: 284 GSLQCECEHNTTGPDCGKCKKNFRTRSWRAG----SYLPLPHGSP 324
>pdb|1PXX|A Chain A, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|B Chain B, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|C Chain C, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|1PXX|D Chain D, Crystal Structure Of Diclofenac Bound To The
Cyclooxygenase Active Site Of Cox-2
pdb|4FM5|A Chain A, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|B Chain B, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|C Chain C, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
pdb|4FM5|D Chain D, X-Ray Structure Of Des-Methylflurbiprofen Bound To Murine
Cox-2
Length = 604
Score = 30.0 bits (66), Expect = 0.80, Method: Composition-based stats.
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 2/41 (4%)
Query: 144 ALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
L A C PC N+G C+ DQ C +C R G+ GE
Sbjct: 13 GLSQAANPCCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 52
>pdb|2OYE|P Chain P, Indomethacin-(r)-alpha-ethyl-ethanolamide Bound To
Cyclooxygenase-1
pdb|2OYU|P Chain P, Indomethacin-(S)-Alpha-Ethyl-Ethanolamide Bound To
Cyclooxygenase-1
Length = 600
Score = 28.9 bits (63), Expect = 1.8, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGG 182
V C PC +QG CV+ D+ C +C R GY G
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSG 66
>pdb|1CQE|A Chain A, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1CQE|B Chain B, Prostaglandin H2 Synthase-1 Complex With Flurbiprofen
pdb|1EQG|A Chain A, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQG|B Chain B, The 2.6 Angstrom Model Of Ovine Cox-1 Complexed With
Ibuprofen
pdb|1EQH|A Chain A, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
pdb|1EQH|B Chain B, The 2.7 Angstrom Model Of Ovine Cox-1 Complexed With
Flurbiprofen
Length = 580
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGG 182
V C PC +QG CV+ D+ C +C R GY G
Sbjct: 13 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSG 46
>pdb|1U67|A Chain A, Crystal Structure Of Arachidonic Acid Bound To A Mutant Of
Prostagladin H Synthase-1 That Forms Predominantly
11-hpete
Length = 600
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGG 182
V C PC +QG CV+ D+ C +C R GY G
Sbjct: 33 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSG 66
>pdb|1PTH|A Chain A, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
pdb|1PTH|B Chain B, The Structural Basis Of Aspirin Activity Inferred From The
Crystal Structure Of Inactivated Prostaglandin H2
Synthase
Length = 576
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGG 182
V C PC +QG CV+ D+ C +C R GY G
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSG 42
>pdb|1PGE|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGE|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
P-(2'-Iodo-5'-Thenoyl) Hydrotropic Acid (Iodosuprofen)
pdb|1PGF|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGF|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Cis Model
pdb|1PGG|A Chain A, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1PGG|B Chain B, Prostaglandin H2 Synthase-1 Complexed With
1-(4-Iodobenzoyl)-5- Methoxy-2-Methylindole-3-Acetic
Acid (Iodoindomethacin), Trans Model
pdb|1FE2|A Chain A, Crystal Structure Of Dihomo-Gamma-Linoleic Acid Bound In
The Cyclooxygenase Channel Of Prostaglandin Endoperoxide
H Synthase-1.
pdb|1IGZ|A Chain A, Crystal Structure Of Linoleic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1.
pdb|1IGX|A Chain A, Crystal Structure Of Eicosapentanoic Acid Bound In The
Cyclooxygenase Channel Of Prostaglandin Endoperoxide H
Synthase-1
Length = 576
Score = 28.9 bits (63), Expect = 1.9, Method: Composition-based stats.
Identities = 15/35 (42%), Positives = 19/35 (54%), Gaps = 2/35 (5%)
Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPR-GYGG 182
V C PC +QG CV+ D+ C +C R GY G
Sbjct: 9 VNPCCYYPCQHQGICVRFGLDRYQC-DCTRTGYSG 42
>pdb|3TZI|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
pdb|3TZI|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of G533v Murine Cox-2
Length = 593
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 10 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 41
>pdb|3QH0|A Chain A, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QH0|B Chain B, X-Ray Crystal Structure Of Palmitic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|A Chain A, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3QMO|B Chain B, X-Ray Crystal Structure Of Ns-398 Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|A Chain A, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|4E1G|B Chain B, X-Ray Crystal Structure Of Alpha-Linolenic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 610
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 27 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 58
>pdb|3OLT|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLT|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
pdb|3OLU|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of R513h Murine Cox-2
Length = 592
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 40
>pdb|3MDL|A Chain A, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3MDL|B Chain B, X-Ray Crystal Structure Of 1-Arachidonoyl Glycerol Bound
To The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 587
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 9 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 40
>pdb|3NT1|A Chain A, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NT1|B Chain B, High Resolution Structure Of Naproxen:cox-2 Complex.
pdb|3NTB|A Chain A, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|B Chain B, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|C Chain C, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3NTB|D Chain D, Structure Of 6-Methylthio Naproxen Analog Bound To Mcox-2.
pdb|3LN0|A Chain A, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|B Chain B, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|C Chain C, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN0|D Chain D, Structure Of Compound 5c-S Bound At The Active Site Of
Cox-2
pdb|3LN1|A Chain A, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|B Chain B, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|C Chain C, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3LN1|D Chain D, Structure Of Celecoxib Bound At The Cox-2 Active Site
pdb|3MQE|A Chain A, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|B Chain B, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|C Chain C, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3MQE|D Chain D, Structure Of Sc-75416 Bound At The Cox-2 Active Site
pdb|3Q7D|A Chain A, Structure Of (R)-Naproxen Bound To Mcox-2.
pdb|3Q7D|B Chain B, Structure Of (R)-Naproxen Bound To Mcox-2
Length = 587
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 35
>pdb|3KRK|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
pdb|3KRK|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound In The
Cyclooxygenase Channel Of L531f Murine Cox-2
Length = 591
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 39
>pdb|3HS5|A Chain A, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS5|B Chain B, X-Ray Crystal Structure Of Arachidonic Acid Bound To The
Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|A Chain A, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS6|B Chain B, X-Ray Crystal Structure Of Eicosapentaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|A Chain A, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
pdb|3HS7|B Chain B, X-Ray Crystal Structure Of Docosahexaenoic Acid Bound To
The Cyclooxygenase Channel Of Cyclooxygenase-2
Length = 591
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 8 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 39
>pdb|3PGH|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|3PGH|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Flurbiprofen
pdb|4COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|4COX|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Non- Selective Inhibitor, Indomethacin
pdb|5COX|A Chain A, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|B Chain B, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|C Chain C, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|5COX|D Chain D, Uninhibited Mouse Cyclooxygenase-2 (Prostaglandin
Synthase-2)
pdb|6COX|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|6COX|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558 In I222 Space Group
pdb|1CX2|A Chain A, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|B Chain B, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|C Chain C, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
pdb|1CX2|D Chain D, Cyclooxygenase-2 (Prostaglandin Synthase-2) Complexed With
A Selective Inhibitor, Sc-558
Length = 587
Score = 28.1 bits (61), Expect = 2.8, Method: Composition-based stats.
Identities = 14/33 (42%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPR-GYGGE 183
C PC N+G C+ DQ C +C R G+ GE
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKC-DCTRTGFYGE 35
>pdb|1W5N|A Chain A, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
pdb|1W5N|B Chain B, Stepwise Introduction Of Zinc Binding Site Into
Porphobilinogen Synthase Of Pseudomonas Aeruginosa
(Mutations D131c And D139c)
Length = 337
Score = 27.3 bits (59), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 15/30 (50%)
Query: 147 GAVTDCKQCPCPNQGPCVQLDDDQVVCSEC 176
G +TD CP G C LDDD V ++
Sbjct: 123 GIITDVALCPFTTHGQCGILDDDGYVLNDV 152
>pdb|2VJ3|A Chain A, Human Notch-1 Egfs 11-13
Length = 135
Score = 27.3 bits (59), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 119 SGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCV-QLDDDQVVC 173
+G+CI NT G +C +GY G E V +C PC N C+ Q+ + Q +C
Sbjct: 18 AGKCI---NTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 70
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 21/59 (35%), Positives = 24/59 (40%), Gaps = 3/59 (5%)
Query: 124 CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG 182
C D G C C GY G E +C PC + G C LD ECP G+ G
Sbjct: 59 CLDQIGEFQC-ICMPGYEGVHCEVNTDECASSPCLHNGRC--LDKINEFQCECPTGFTG 114
>pdb|4D90|A Chain A, Crystal Structure Of Del-1 Egf Domains
pdb|4D90|B Chain B, Crystal Structure Of Del-1 Egf Domains
Length = 143
Score = 26.9 bits (58), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 7/81 (8%)
Query: 86 QLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNAL 145
++ EPTS G + PC+ G +I +A G D G C +C RG+ G
Sbjct: 41 EVASDEEEPTSAGPCTP-NPCHNGGTCEISEAYRG-----DTFIGYVC-KCPRGFNGIHC 93
Query: 146 EGAVTDCKQCPCPNQGPCVQL 166
+ + +C+ PC N G C L
Sbjct: 94 QHNINECEVEPCKNGGICTDL 114
>pdb|1TOZ|A Chain A, Nmr Structure Of The Human Notch-1 Ligand Binding Region
Length = 116
Score = 26.6 bits (57), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 119 SGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCV-QLDDDQVVC 173
+G+CI NT G +C +GY G E V +C PC N C+ Q+ + Q +C
Sbjct: 16 AGKCI---NTLGSFECQCLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGEFQCIC 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.476
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,833,289
Number of Sequences: 62578
Number of extensions: 286471
Number of successful extensions: 659
Number of sequences better than 100.0: 84
Number of HSP's better than 100.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 42
Number of HSP's that attempted gapping in prelim test: 516
Number of HSP's gapped (non-prelim): 188
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 48 (23.1 bits)