Query psy15473
Match_columns 190
No_of_seqs 140 out of 1612
Neff 9.3
Searched_HMMs 46136
Date Fri Aug 16 21:58:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 99.9 6E-24 1.3E-28 184.9 10.5 162 2-190 781-952 (1758)
2 KOG0994|consensus 99.8 2.7E-20 5.9E-25 162.4 9.2 177 1-190 298-498 (1758)
3 KOG3512|consensus 99.7 5E-17 1.1E-21 131.5 10.3 171 3-187 295-479 (592)
4 KOG1836|consensus 99.7 1.3E-16 2.8E-21 147.8 12.8 180 1-190 743-977 (1705)
5 KOG1836|consensus 99.5 2E-14 4.3E-19 133.5 8.9 119 62-189 696-815 (1705)
6 KOG3512|consensus 99.4 3.1E-12 6.7E-17 104.0 9.0 134 37-190 277-432 (592)
7 KOG1219|consensus 99.2 2.2E-11 4.7E-16 113.1 7.6 120 27-189 3859-3980(4289)
8 KOG4289|consensus 99.0 7.3E-10 1.6E-14 100.1 8.1 118 33-189 1717-1840(2531)
9 KOG4289|consensus 98.9 3.2E-09 7E-14 96.1 8.2 55 12-75 1220-1274(2531)
10 KOG1225|consensus 98.8 1E-08 2.2E-13 86.4 8.0 67 62-135 266-342 (525)
11 KOG1226|consensus 98.6 2.3E-07 5.1E-12 80.2 8.7 134 3-188 478-622 (783)
12 KOG1219|consensus 98.6 6.4E-08 1.4E-12 91.1 4.8 92 12-134 3884-3977(4289)
13 KOG1225|consensus 98.5 3.8E-07 8.3E-12 77.1 7.9 102 62-184 235-365 (525)
14 cd00055 EGF_Lam Laminin-type e 98.5 1.8E-07 3.9E-12 54.6 4.2 40 106-145 2-44 (50)
15 smart00180 EGF_Lam Laminin-typ 98.4 5.8E-07 1.3E-11 51.4 3.9 30 113-142 11-40 (46)
16 KOG1214|consensus 98.3 1.8E-06 3.9E-11 75.4 7.8 135 18-184 719-860 (1289)
17 PF00053 Laminin_EGF: Laminin 98.3 1.9E-07 4.2E-12 54.2 1.0 33 113-145 11-43 (49)
18 cd00055 EGF_Lam Laminin-type e 98.1 5.4E-06 1.2E-10 48.3 3.6 29 1-29 17-45 (50)
19 PF00008 EGF: EGF-like domain 98.0 1.8E-06 3.9E-11 45.4 0.9 32 152-184 1-32 (32)
20 smart00180 EGF_Lam Laminin-typ 98.0 4.5E-06 9.8E-11 47.7 2.6 25 1-25 16-40 (46)
21 KOG4260|consensus 98.0 1.1E-05 2.3E-10 62.3 5.3 135 7-182 132-269 (350)
22 PF00053 Laminin_EGF: Laminin 97.9 3.9E-06 8.5E-11 48.6 1.1 28 1-28 16-43 (49)
23 KOG1217|consensus 97.9 0.00013 2.8E-09 61.3 10.6 142 18-185 155-306 (487)
24 smart00179 EGF_CA Calcium-bind 97.6 8.4E-05 1.8E-09 40.4 3.3 36 149-186 2-39 (39)
25 KOG1217|consensus 97.5 0.0016 3.5E-08 54.6 11.0 56 126-183 334-389 (487)
26 cd00054 EGF_CA Calcium-binding 97.3 0.00032 6.9E-09 37.6 3.2 35 150-186 3-38 (38)
27 PF00008 EGF: EGF-like domain 97.2 0.00023 5.1E-09 37.2 1.8 31 35-72 1-31 (32)
28 KOG4260|consensus 97.2 0.00025 5.4E-09 54.9 2.7 26 2-27 167-192 (350)
29 KOG3509|consensus 97.2 0.0058 1.3E-07 55.5 11.0 136 2-156 717-863 (964)
30 KOG1226|consensus 96.8 0.0016 3.5E-08 57.1 4.3 89 84-187 480-581 (783)
31 PF07974 EGF_2: EGF-like domai 96.7 0.0012 2.6E-08 34.5 1.9 26 156-185 7-32 (32)
32 cd00053 EGF Epidermal growth f 96.7 0.0024 5.1E-08 33.5 3.0 31 154-186 5-36 (36)
33 smart00051 DSL delta serrate l 96.6 0.0037 8.1E-08 38.1 3.6 43 85-133 20-63 (63)
34 PF12661 hEGF: Human growth fa 96.5 0.00084 1.8E-08 27.7 0.4 13 4-16 1-13 (13)
35 KOG3509|consensus 96.5 0.0083 1.8E-07 54.6 6.9 118 62-189 719-844 (964)
36 smart00181 EGF Epidermal growt 96.5 0.0038 8.2E-08 32.9 2.9 32 152-186 2-35 (35)
37 smart00051 DSL delta serrate l 96.5 0.0036 7.8E-08 38.1 3.0 43 135-185 20-63 (63)
38 PF07974 EGF_2: EGF-like domai 96.3 0.0042 9.2E-08 32.4 2.5 26 107-133 7-32 (32)
39 PF07645 EGF_CA: Calcium-bindi 96.1 0.0024 5.3E-08 35.5 1.0 31 149-181 2-34 (42)
40 KOG1214|consensus 96.0 0.021 4.6E-07 50.9 6.6 46 18-71 812-858 (1289)
41 smart00179 EGF_CA Calcium-bind 96.0 0.013 2.8E-07 31.5 3.5 31 32-70 2-33 (39)
42 KOG1388|consensus 95.3 0.013 2.9E-07 44.0 2.4 77 104-189 50-129 (217)
43 cd00054 EGF_CA Calcium-binding 95.0 0.042 9E-07 28.9 3.4 33 32-72 2-35 (38)
44 KOG1218|consensus 94.7 0.51 1.1E-05 37.7 10.2 13 2-14 14-26 (316)
45 PF12947 EGF_3: EGF domain; I 94.2 0.018 3.9E-07 30.9 0.5 26 156-183 7-32 (36)
46 PF07645 EGF_CA: Calcium-bindi 93.7 0.062 1.3E-06 29.7 2.1 31 32-70 2-34 (42)
47 KOG1218|consensus 93.6 1.3 2.8E-05 35.3 10.4 56 85-146 165-221 (316)
48 cd00053 EGF Epidermal growth f 92.7 0.21 4.5E-06 25.7 3.2 28 37-72 5-32 (36)
49 smart00181 EGF Epidermal growt 90.6 0.45 9.7E-06 24.6 3.1 28 35-71 2-30 (35)
50 KOG0196|consensus 88.2 0.82 1.8E-05 41.3 4.5 57 119-182 258-318 (996)
51 PF01414 DSL: Delta serrate li 88.0 0.19 4.2E-06 30.5 0.5 14 4-17 18-31 (63)
52 PHA02887 EGF-like protein; Pro 87.1 0.47 1E-05 32.3 1.9 29 157-187 94-123 (126)
53 PF01414 DSL: Delta serrate li 86.6 0.1 2.2E-06 31.8 -1.4 44 85-133 20-63 (63)
54 PHA03099 epidermal growth fact 85.1 0.63 1.4E-05 32.2 1.8 29 157-187 53-82 (139)
55 KOG0196|consensus 83.4 1.9 4.1E-05 39.2 4.4 41 2-44 258-302 (996)
56 KOG1388|consensus 83.2 0.71 1.5E-05 34.9 1.5 53 81-137 76-129 (217)
57 KOG3514|consensus 80.7 1.3 2.7E-05 41.3 2.4 37 151-189 625-662 (1591)
58 PF12662 cEGF: Complement Clr- 73.7 2.1 4.5E-05 20.6 1.0 10 171-181 2-11 (24)
59 PHA03099 epidermal growth fact 65.3 4.1 9E-05 28.3 1.5 20 9-29 62-81 (139)
60 KOG3516|consensus 63.6 6.1 0.00013 37.4 2.6 36 150-187 546-582 (1306)
61 PF14670 FXa_inhibition: Coagu 61.0 4.7 0.0001 21.4 0.9 18 162-181 11-28 (36)
62 PF03302 VSP: Giardia variant- 61.0 71 0.0015 26.8 8.3 10 172-181 241-250 (397)
63 PF12946 EGF_MSP1_1: MSP1 EGF 56.2 5 0.00011 21.5 0.5 29 152-181 2-30 (37)
64 PF07699 GCC2_GCC3: GCC2 and G 50.6 15 0.00032 20.6 1.9 24 14-39 9-32 (48)
65 KOG3514|consensus 43.8 21 0.00045 33.9 2.6 34 34-75 625-659 (1591)
66 KOG3516|consensus 40.1 34 0.00075 32.7 3.5 36 150-187 956-992 (1306)
67 PF12955 DUF3844: Domain of un 40.1 20 0.00044 24.0 1.6 33 154-187 12-61 (103)
68 PF01683 EB: EB module; Inter 38.6 30 0.00066 19.5 2.0 19 157-181 28-46 (52)
69 cd00185 TNFR Tumor necrosis fa 33.1 1.4E+02 0.003 19.4 4.8 8 86-93 79-86 (98)
70 PF04863 EGF_alliinase: Alliin 29.8 12 0.00026 21.9 -0.7 31 156-187 18-51 (56)
71 PF09064 Tme5_EGF_like: Thromb 29.0 30 0.00065 18.1 0.8 10 171-181 18-27 (34)
72 cd01475 vWA_Matrilin VWA_Matri 28.9 68 0.0015 24.2 3.1 21 161-183 199-219 (224)
73 KOG3607|consensus 26.0 59 0.0013 29.6 2.6 28 106-135 630-657 (716)
No 1
>KOG0994|consensus
Probab=99.90 E-value=6e-24 Score=184.88 Aligned_cols=162 Identities=38% Similarity=0.854 Sum_probs=132.2
Q ss_pred CceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccC
Q psy15473 2 FRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTR 81 (190)
Q Consensus 2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~ 81 (190)
.|+|+|++|..|..|++|+||+||..-++ |.++.|+.-|+-..+-+.. ..+|.|.++.- ++
T Consensus 781 GGqCqCkPnVVGR~CdqCApGtyGFGPsG----Ck~CdC~~~Gs~~~~Cd~~------tGQC~C~~g~y---------gr 841 (1758)
T KOG0994|consen 781 GGQCQCKPNVVGRRCDQCAPGTYGFGPSG----CKACDCNSIGSLDKYCDKI------TGQCQCRPGTY---------GR 841 (1758)
T ss_pred CceecccCccccccccccCCcccCcCCcc----Ccccccccccccccccccc------ccceeeccccc---------hh
Confidence 47899999999999999999999998554 9999999877644433221 14566665544 46
Q ss_pred CCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCC
Q psy15473 82 QTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQ 160 (190)
Q Consensus 82 ~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~ 160 (190)
+|..|.|||||. ++|.+|+|++|+++|++++|.| .|+..++|..|+.|+.||||++--..-..|.|+||..+
T Consensus 842 qCnqCqpG~WgF-------PeCr~CqCNgHA~~Cd~~tGaCi~CqD~T~G~~CdrCl~GyyGdP~lg~g~~CrPCpCP~g 914 (1758)
T KOG0994|consen 842 QCNQCQPGYWGF-------PECRPCQCNGHADTCDPITGACIDCQDSTTGHSCDRCLDGYYGDPRLGSGIGCRPCPCPDG 914 (1758)
T ss_pred hccccCCCccCC-------CcCccccccCcccccCccccccccccccccccchhhhhccccCCcccCCCCCCCCCCCCCC
Confidence 678899999984 6799999999999999999999 59999999999999999999987665566999999765
Q ss_pred C--------Cceec-CCCCeeeCCCCCCCCCCCCCCCCC
Q psy15473 161 G--------PCVQL-DDDQVVCSECPRGYGGEKMSPGAQ 190 (190)
Q Consensus 161 g--------~C~~~-~~~~~~C~~C~~G~~G~~C~~c~~ 190 (190)
. +|+.. ....-.| .|++||.|.+|+.||+
T Consensus 915 p~Sg~~~A~sC~~d~~t~~ivC-~C~~GY~G~RCe~CA~ 952 (1758)
T KOG0994|consen 915 PASGRQHADSCYLDTRTQQIVC-HCQEGYSGSRCEICAD 952 (1758)
T ss_pred Cccchhccccccccccccceee-ecccCccccchhhhcc
Confidence 2 46543 2234799 9999999999999985
No 2
>KOG0994|consensus
Probab=99.82 E-value=2.7e-20 Score=162.39 Aligned_cols=177 Identities=26% Similarity=0.618 Sum_probs=136.2
Q ss_pred CCceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCC--CCC
Q psy15473 1 MFRRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG--NRT 74 (190)
Q Consensus 1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g--~~c 74 (190)
|+|+|+|+|||.|.+||+|++.|...+|.. ..|+|+.|.|+.|+.-..|+....-..++. ++| ..|
T Consensus 298 VHG~C~C~HNT~G~nCE~C~~fYnDlPWrpAeG~~~neCrkC~CNgHa~sCHFD~aV~~ASG~v--------SGGVCDdC 369 (1758)
T KOG0994|consen 298 VHGRCMCKHNTAGLNCEHCAPFYNDLPWRPAEGKTSNECRKCECNGHADTCHFDMAVYEASGNV--------SGGVCDDC 369 (1758)
T ss_pred ecceeEeccCCCCCChHHhhHhhcCCCCCccCCCCcccccccCCCCCcccccccHHHHhhcCCc--------ccccCccc
Confidence 689999999999999999999999999984 568999999999987555543322222222 222 235
Q ss_pred CCccccCCCccCCCCcccCCC-CCCCCCCcccCCCcCCCC--------CccCCC----CeeeCCCCCCCCCCccCCCCcc
Q psy15473 75 RGLALTRQTHYQLTGYHHEPT-SGGAFSRCVPCNCNGHAD--------ICDAES----GRCICQDNTGGDNCERCARGYY 141 (190)
Q Consensus 75 ~~~~~~~~~~~C~~G~~g~~~-~~~~~~~C~~c~C~~~~~--------~C~~~~----g~C~C~~g~~G~~C~~C~~G~~ 141 (190)
+..+.++.|..|+|.|+..+. .......|++|.|+..+. .+++.+ |+|.|++++.|.+|++|++|||
T Consensus 370 qHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RCd~Ck~Gyw 449 (1758)
T KOG0994|consen 370 QHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRCDRCKDGYW 449 (1758)
T ss_pred cccccccchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccccCccccccccccccccCcCccccchhccCcc
Confidence 555666677889999998764 333457899999987652 255555 8999999999999999999999
Q ss_pred cCCCCCCCCCCcCCCCCCCCC-----ceecCCCCeeeCCCCCCCCCCCCCCCCC
Q psy15473 142 GNALEGAVTDCKQCPCPNQGP-----CVQLDDDQVVCSECPRGYGGEKMSPGAQ 190 (190)
Q Consensus 142 g~~c~~~~~~C~~~~C~~~g~-----C~~~~~~~~~C~~C~~G~~G~~C~~c~~ 190 (190)
|..-+ ++..|.+|.|+..|| |+.. ++.| .|++-.+|+.|++|+|
T Consensus 450 gl~~~-dp~GC~~C~CN~lGT~~~s~CD~~---TG~C-~ckrlvTg~~cdqclP 498 (1758)
T KOG0994|consen 450 GLTSA-DPYGCRPCDCNPLGTRNGSGCDPE---TGDC-YCKRLVTGIDCDQCLP 498 (1758)
T ss_pred cCccC-CCCCccccccccccccCCCCCCCC---CCce-EeeccccCCCccccCc
Confidence 97643 567799999976654 5543 4899 8999999999999986
No 3
>KOG3512|consensus
Probab=99.71 E-value=5e-17 Score=131.50 Aligned_cols=171 Identities=24% Similarity=0.559 Sum_probs=117.8
Q ss_pred ceeecCCCCCCCCCccCCCCcccCCCCC----CCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcc
Q psy15473 3 RRCICQDNTGGDNCERCARGYYGNALEG----AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLA 78 (190)
Q Consensus 3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~----~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~ 78 (190)
..|.|+|||+|+.|++|++.|++.+|.. ++++|..+.|+.|++-..+........+....-+| .+|...+
T Consensus 295 ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~Ely~lSgr~SggvC------lnCrHnT 368 (592)
T KOG3512|consen 295 LTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNMELYRLSGRRSGGVC------LNCRHNT 368 (592)
T ss_pred eEEecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchhhhcccCccccceE------eecccCC
Confidence 4799999999999999999999999984 67899999999988732232222111221110011 2345555
Q ss_pred ccCCCccCCCCcccCCC-CCCCCCCcccCCCcCCC---CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcC
Q psy15473 79 LTRQTHYQLTGYHHEPT-SGGAFSRCVPCNCNGHA---DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ 154 (190)
Q Consensus 79 ~~~~~~~C~~G~~g~~~-~~~~~~~C~~c~C~~~~---~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~ 154 (190)
.++.|++|.+||+...- +......|..|.|+..+ .+|+..+|+|.|++|.+|..|..|.+||+...-. +--|..
T Consensus 369 aGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCnrCa~gyqqsrs~--vapcik 446 (592)
T KOG3512|consen 369 AGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCNRCAPGYQQSRSP--VAPCIK 446 (592)
T ss_pred CCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccccccchhhcccCC--CcCcee
Confidence 56777999999998654 33334689999998654 5899999999999999999999999999864321 111322
Q ss_pred CC------CCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473 155 CP------CPNQGPCVQLDDDQVVCSECPRGYGGEKMSP 187 (190)
Q Consensus 155 ~~------C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~ 187 (190)
.| +.++++ . ....+ .|+.++.|.++++
T Consensus 447 ~p~~~~~~~~s~ve--~---qd~~s-~Ck~~~~~~r~n~ 479 (592)
T KOG3512|consen 447 IPTDAPTLGSSGVE--P---QDQCS-KCKASPGGKRLNQ 479 (592)
T ss_pred cCCCCccccCCCCc--c---hhccc-cCCCCCcceeccc
Confidence 22 222222 1 22455 8999998888764
No 4
>KOG1836|consensus
Probab=99.70 E-value=1.3e-16 Score=147.84 Aligned_cols=180 Identities=26% Similarity=0.620 Sum_probs=140.8
Q ss_pred CCceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEe-ecCCCCCCCCCCc--
Q psy15473 1 MFRRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIR-IKSALGGNRTRGL-- 77 (190)
Q Consensus 1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~-c~~~~~g~~c~~~-- 77 (190)
.+|+|.|++++.|..|++|.+||||..-....++|++++|++.+.|....... ...|. |+++|.|.+|+.-
T Consensus 743 ~tG~C~C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~------~~iCk~Cp~gytG~rCe~c~d 816 (1705)
T KOG1836|consen 743 RTGQCKCKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEIL------EVVCKNCPPGYTGLRCEECAD 816 (1705)
T ss_pred CCCceecccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCccc------ceecCCCCCCCcccccccCCC
Confidence 47899999999999999999999999988888789999999999888776421 13455 7778777655411
Q ss_pred ----------------------------------------------cccCCCccCCCCcccCCCCCCCCCCcccCCCcCC
Q psy15473 78 ----------------------------------------------ALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH 111 (190)
Q Consensus 78 ----------------------------------------------~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~ 111 (190)
..+..++.|.+||||+.-...+.+.|..+.|+..
T Consensus 817 gyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~ 896 (1705)
T KOG1836|consen 817 GYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPA 896 (1705)
T ss_pred ccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccC
Confidence 0122345588999998754345577888888765
Q ss_pred C-----CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceec-CCCCeeeCCCCCCCCCCCC
Q psy15473 112 A-----DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL-DDDQVVCSECPRGYGGEKM 185 (190)
Q Consensus 112 ~-----~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C 185 (190)
+ .+|++.+|+|.|+++..|..|..|.+|||+..-. ..|.++.|...|+-... ..+++.| .|++|.+|.+|
T Consensus 897 gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~---~gC~~c~c~~~gs~~~~c~~~tGqc-~c~~gVtgqrc 972 (1705)
T KOG1836|consen 897 GSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSG---VGCEPCNCDPTGSESSDCDVGTGQC-YCRPGVTGQRC 972 (1705)
T ss_pred CcccccccCCCcccceeccCCCCccccccccccccccCCC---CCcccccccccccccccccccCCce-eeecCcccccc
Confidence 4 2599999999999999999999999999998732 56899999887753222 2355899 99999999999
Q ss_pred CCCCC
Q psy15473 186 SPGAQ 190 (190)
Q Consensus 186 ~~c~~ 190 (190)
++|+.
T Consensus 973 ~qc~~ 977 (1705)
T KOG1836|consen 973 DQCET 977 (1705)
T ss_pred Ccccc
Confidence 99863
No 5
>KOG1836|consensus
Probab=99.54 E-value=2e-14 Score=133.55 Aligned_cols=119 Identities=38% Similarity=0.881 Sum_probs=104.0
Q ss_pred eEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcc
Q psy15473 62 RIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYY 141 (190)
Q Consensus 62 ~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~ 141 (190)
.|.|+.+|.|..| ..|++||+...-...++..|.+|+|+++..+|++.+|+|.|++++.|.+|++|..|||
T Consensus 696 ~c~C~~g~tG~~C---------e~C~~gfrr~~~~~~~~~~c~~C~cngh~~~Cd~~tG~C~C~~~t~G~~C~~C~~GfY 766 (1705)
T KOG1836|consen 696 QCTCPVGYTGQFC---------ESCAPGFRRLSPQLGPFCPCIPCDCNGHSNICDPRTGQCKCKHNTFGGQCAQCVDGFY 766 (1705)
T ss_pred hccCCCCcccchh---------hhcchhhhcccccCCCCCcccccccCCccccccCCCCceecccCCCCCchhhhcCCCC
Confidence 4889999998776 5699999998776656678888999988889999999999999999999999999999
Q ss_pred cCCCCCCCCCCcCCCCCCCCCceecC-CCCeeeCCCCCCCCCCCCCCCC
Q psy15473 142 GNALEGAVTDCKQCPCPNQGPCVQLD-DDQVVCSECPRGYGGEKMSPGA 189 (190)
Q Consensus 142 g~~c~~~~~~C~~~~C~~~g~C~~~~-~~~~~C~~C~~G~~G~~C~~c~ 189 (190)
|.+-.....+|++++|.+.+.|.... ...+.|.+|++||+|.+|+.|+
T Consensus 767 g~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~ 815 (1705)
T KOG1836|consen 767 GLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA 815 (1705)
T ss_pred CccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence 99877766779999999998887653 4568996699999999999986
No 6
>KOG3512|consensus
Probab=99.36 E-value=3.1e-12 Score=104.05 Aligned_cols=134 Identities=30% Similarity=0.641 Sum_probs=102.9
Q ss_pred CCCCCCCCC-ceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCC---CCCCCcccCCCcCCC
Q psy15473 37 QCPCPNQGP-CVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSG---GAFSRCVPCNCNGHA 112 (190)
Q Consensus 37 ~~~C~~~g~-C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~---~~~~~C~~c~C~~~~ 112 (190)
.|.|+.|++ |+....+ +..|.|+.+..|+-| ..|++-|++.++.. .+.+.|..+.|+.|+
T Consensus 277 RCKCNgHAs~Cv~d~~~-------~ltCdC~HNTaGPdC---------grCKpfy~dRPW~raT~~~a~~c~ac~Cn~ha 340 (592)
T KOG3512|consen 277 RCKCNGHASRCVMDESS-------HLTCDCEHNTAGPDC---------GRCKPFYYDRPWGRATALPANECVACNCNGHA 340 (592)
T ss_pred eeeecCccceeeeccCC-------ceEEecccCCCCCCc---------ccccccccCCCccccccCCCccccccccchhh
Confidence 367888877 6655433 257999999888665 67999999887643 245789999999887
Q ss_pred CCccCC-----------CCee-eCCCCCCCCCCccCCCCcccCCCCC--CCCCCcCCCCCCCCC----ceecCCCCeeeC
Q psy15473 113 DICDAE-----------SGRC-ICQDNTGGDNCERCARGYYGNALEG--AVTDCKQCPCPNQGP----CVQLDDDQVVCS 174 (190)
Q Consensus 113 ~~C~~~-----------~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~--~~~~C~~~~C~~~g~----C~~~~~~~~~C~ 174 (190)
..|-.. .|.| .|++++.|.+|+.|++|||.+.-.. ...+|..|.|+..|+ |... +++|
T Consensus 341 rrcrfn~Ely~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~---tGqC- 416 (592)
T KOG3512|consen 341 RRCRFNMELYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQT---TGQC- 416 (592)
T ss_pred hhcccchhhhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCccccccccccccc---CCcc-
Confidence 645321 2477 6999999999999999999876542 235699999998874 5543 3899
Q ss_pred CCCCCCCCCCCCCCCC
Q psy15473 175 ECPRGYGGEKMSPGAQ 190 (190)
Q Consensus 175 ~C~~G~~G~~C~~c~~ 190 (190)
.|++|.+|..|++||+
T Consensus 417 pCkeGvtG~tCnrCa~ 432 (592)
T KOG3512|consen 417 PCKEGVTGLTCNRCAP 432 (592)
T ss_pred cCCCCCcccccccccc
Confidence 9999999999999986
No 7
>KOG1219|consensus
Probab=99.23 E-value=2.2e-11 Score=113.14 Aligned_cols=120 Identities=22% Similarity=0.543 Sum_probs=87.8
Q ss_pred CCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccC
Q psy15473 27 ALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPC 106 (190)
Q Consensus 27 ~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c 106 (190)
.|....+.|...||+|+|+|.....+ .+.|.|++.|.|.+ |+. ....|.+.
T Consensus 3859 gC~l~~d~C~~npCqhgG~C~~~~~g-------gy~CkCpsqysG~~---------------------CEi-~~epC~sn 3909 (4289)
T KOG1219|consen 3859 GCSLLTDPCNDNPCQHGGTCISQPKG-------GYKCKCPSQYSGNH---------------------CEI-DLEPCASN 3909 (4289)
T ss_pred cccccccccccCcccCCCEecCCCCC-------ceEEeCcccccCcc---------------------ccc-ccccccCC
Confidence 34444578999999999999876643 25666665555544 443 35678888
Q ss_pred CCcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473 107 NCNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184 (190)
Q Consensus 107 ~C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~ 184 (190)
+|.. +.+|.+.. ..|.|+.+|+|.+|+. .| +++|...+|.++|.|.... +++.| +|.+||.|+.
T Consensus 3910 PC~~-GgtCip~~n~f~CnC~~gyTG~~Ce~--~G---------i~eCs~n~C~~gg~C~n~~-gsf~C-ncT~g~~gr~ 3975 (4289)
T KOG1219|consen 3910 PCLT-GGTCIPFYNGFLCNCPNGYTGKRCEA--RG---------ISECSKNVCGTGGQCINIP-GSFHC-NCTPGILGRT 3975 (4289)
T ss_pred CCCC-CCEEEecCCCeeEeCCCCccCceeec--cc---------ccccccccccCCceeeccC-CceEe-ccChhHhccc
Confidence 9985 44887643 3677777777777742 11 5789999999999999875 77999 9999999999
Q ss_pred CCCCC
Q psy15473 185 MSPGA 189 (190)
Q Consensus 185 C~~c~ 189 (190)
|.-.+
T Consensus 3976 c~~~~ 3980 (4289)
T KOG1219|consen 3976 CCAEK 3980 (4289)
T ss_pred Ccccc
Confidence 86444
No 8
>KOG4289|consensus
Probab=99.03 E-value=7.3e-10 Score=100.09 Aligned_cols=118 Identities=25% Similarity=0.544 Sum_probs=89.4
Q ss_pred CCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCC
Q psy15473 33 TDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA 112 (190)
Q Consensus 33 ~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~ 112 (190)
+.|..+||.+.|+|+..++.. -+.|.|+++|.|++|+... ...|+.||||. +.|.+|.|.-+.
T Consensus 1717 ~vC~lnpc~~~g~Cv~sp~a~------GY~C~C~~g~~G~~Ce~~~----dq~CPrGWWG~-------P~CgpC~CavsK 1779 (2531)
T KOG4289|consen 1717 DVCSLNPCENQGTCVRSPGAH------GYTCECPPGYTGPYCELRA----DQPCPRGWWGF-------PTCGPCNCAVSK 1779 (2531)
T ss_pred chhcccccccCceeecCCCCC------ceeEECCCcccCcchhhhc----cCCCCCcccCC-------CCccCccccccC
Confidence 357889999999998877652 2789999999999997655 35699999994 468888887443
Q ss_pred ---CCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCC---CceecCCCCeeeCCCCCCCCCCCCC
Q psy15473 113 ---DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG---PCVQLDDDQVVCSECPRGYGGEKMS 186 (190)
Q Consensus 113 ---~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g---~C~~~~~~~~~C~~C~~G~~G~~C~ 186 (190)
..|+..+|+|+||++. |. .+..|.+|.|..+. +|. ..++| .|++|.+|++|+
T Consensus 1780 gfdp~CnKt~G~CqCKe~h------------y~-----~~~~Cl~CdC~~Gs~Sr~C~----adGqC-~C~pgaiGRqCd 1837 (2531)
T KOG4289|consen 1780 GFDPDCNKTNGQCQCKENH------------YR-----PIGSCLPCDCYFGSDSRECD----ADGQC-PCKPGAIGRQCD 1837 (2531)
T ss_pred CCCCCccccCcceeecccc------------cc-----CCCcceeeccccCCCccccc----CCCcC-CCCCcccccccc
Confidence 3799999999988653 21 12337788887433 243 23799 999999999999
Q ss_pred CCC
Q psy15473 187 PGA 189 (190)
Q Consensus 187 ~c~ 189 (190)
+|.
T Consensus 1838 rCd 1840 (2531)
T KOG4289|consen 1838 RCD 1840 (2531)
T ss_pred ccC
Confidence 984
No 9
>KOG4289|consensus
Probab=98.93 E-value=3.2e-09 Score=96.09 Aligned_cols=55 Identities=25% Similarity=0.614 Sum_probs=47.2
Q ss_pred CCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCC
Q psy15473 12 GGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTR 75 (190)
Q Consensus 12 ~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~ 75 (190)
.|..| +||+||+|+.|+..++.|-+.||.++|+|....++ ++|.|.++|.|.+|+
T Consensus 1220 nglrC-rCPpGFTgd~CeTeiDlCYs~pC~nng~C~srEgg--------YtCeCrpg~tGehCE 1274 (2531)
T KOG4289|consen 1220 NGLRC-RCPPGFTGDYCETEIDLCYSGPCGNNGRCRSREGG--------YTCECRPGFTGEHCE 1274 (2531)
T ss_pred CceeE-eCCCCCCcccccchhHhhhcCCCCCCCceEEecCc--------eeEEecCCcccccee
Confidence 35667 89999999999999999999999999999998876 578888887777764
No 10
>KOG1225|consensus
Probab=98.85 E-value=1e-08 Score=86.42 Aligned_cols=67 Identities=25% Similarity=0.557 Sum_probs=39.7
Q ss_pred eEeecCCCCCCCCCCccccCC----------CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCC
Q psy15473 62 RIRIKSALGGNRTRGLALTRQ----------THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGD 131 (190)
Q Consensus 62 ~c~c~~~~~g~~c~~~~~~~~----------~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~ 131 (190)
.|.|+++|.|..|........ -..|.+||+|+.|+. ..|. -+|.+++ .|. .|+|.|.+||+|.
T Consensus 266 ~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs~---~~cp-adC~g~G-~Ci--~G~C~C~~Gy~G~ 338 (525)
T KOG1225|consen 266 RCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCSI---RRCP-ADCSGHG-KCI--DGECLCDEGYTGE 338 (525)
T ss_pred eEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCcccccccc---ccCC-ccCCCCC-ccc--CCceEeCCCCcCC
Confidence 566666666655544222111 123777888877754 2233 5677666 775 6788877777777
Q ss_pred CCcc
Q psy15473 132 NCER 135 (190)
Q Consensus 132 ~C~~ 135 (190)
.|++
T Consensus 339 ~C~~ 342 (525)
T KOG1225|consen 339 LCIQ 342 (525)
T ss_pred cccc
Confidence 6653
No 11
>KOG1226|consensus
Probab=98.59 E-value=2.3e-07 Score=80.19 Aligned_cols=134 Identities=25% Similarity=0.625 Sum_probs=75.3
Q ss_pred ceeecCCCCCCCCCccCCCCcccCCCCCCCCCCcC----CCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCcc
Q psy15473 3 RRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQ----CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLA 78 (190)
Q Consensus 3 ~~C~C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~----~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~ 78 (190)
|+|.|.+||.|..| .|+..-+... + ..+.|+. .+|.+.|.|.- .+|.|.....+
T Consensus 478 G~C~C~~G~~G~~C-EC~~~~~ss~-~-~~~~Cr~~~~~~vCSgrG~C~C------------GqC~C~~~~~~------- 535 (783)
T KOG1226|consen 478 GQCRCDEGWLGKKC-ECSTDELSSS-E-EEDKCRENSDSPVCSGRGDCVC------------GQCVCHKPDNG------- 535 (783)
T ss_pred cceecCCCCCCCcc-cCCccccCcH-h-HHhhccCCCCCCCcCCCCcEeC------------CceEecCCCCC-------
Confidence 56777777777777 4554433321 0 1234542 26777766643 24555433321
Q ss_pred ccCCCccCCCCcccCCCCCCCCCCccc---CCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCC
Q psy15473 79 LTRQTHYQLTGYHHEPTSGGAFSRCVP---CNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155 (190)
Q Consensus 79 ~~~~~~~C~~G~~g~~~~~~~~~~C~~---c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~ 155 (190)
-++|..|+-+. ..|.. .-|.+++ .|. -|+|+|.+||+|..| .|. .+.+.|.+.
T Consensus 536 ----------~i~G~fCECDn-fsC~r~~g~lC~g~G-~C~--CG~CvC~~GwtG~~C-~C~---------~std~C~~~ 591 (783)
T KOG1226|consen 536 ----------KIYGKFCECDN-FSCERHKGVLCGGHG-RCE--CGRCVCNPGWTGSAC-NCP---------LSTDTCESS 591 (783)
T ss_pred ----------ceeeeeeeccC-cccccccCcccCCCC-eEe--CCcEEcCCCCccCCC-CCC---------CCCccccCC
Confidence 13344443211 12221 1255555 453 478899999999988 454 233445543
Q ss_pred ---CCCCCCCceecCCCCeeeCCCCCC-CCCCCCCCC
Q psy15473 156 ---PCPNQGPCVQLDDDQVVCSECPRG-YGGEKMSPG 188 (190)
Q Consensus 156 ---~C~~~g~C~~~~~~~~~C~~C~~G-~~G~~C~~c 188 (190)
-|...|+|.- ++| .|... |.|..||.|
T Consensus 592 ~G~iCSGrG~C~C-----g~C-~C~~~~~sG~~CE~c 622 (783)
T KOG1226|consen 592 DGQICSGRGTCEC-----GRC-KCTDPPYSGEFCEKC 622 (783)
T ss_pred CCceeCCCceeeC-----Cce-EcCCCCcCcchhhcC
Confidence 2777777765 567 77665 899999876
No 12
>KOG1219|consensus
Probab=98.57 E-value=6.4e-08 Score=91.09 Aligned_cols=92 Identities=26% Similarity=0.603 Sum_probs=72.6
Q ss_pred CCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcc
Q psy15473 12 GGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYH 91 (190)
Q Consensus 12 ~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~ 91 (190)
.|..| +|++-|.|..|+.+...|.++||..+|+|+.+.+++ .|.|+ .||+
T Consensus 3884 ggy~C-kCpsqysG~~CEi~~epC~snPC~~GgtCip~~n~f--------~CnC~---------------------~gyT 3933 (4289)
T KOG1219|consen 3884 GGYKC-KCPSQYSGNHCEIDLEPCASNPCLTGGTCIPFYNGF--------LCNCP---------------------NGYT 3933 (4289)
T ss_pred CceEE-eCcccccCcccccccccccCCCCCCCCEEEecCCCe--------eEeCC---------------------CCcc
Confidence 45667 899999999999999999999999999999987663 45555 4555
Q ss_pred cCCCCCCCCCCcccCCCcCCCCCccCCCC--eeeCCCCCCCCCCc
Q psy15473 92 HEPTSGGAFSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCE 134 (190)
Q Consensus 92 g~~~~~~~~~~C~~c~C~~~~~~C~~~~g--~C~C~~g~~G~~C~ 134 (190)
|..|+...+++|....|. ++..|..+-| .|.|.+++.|+.|.
T Consensus 3934 G~~Ce~~Gi~eCs~n~C~-~gg~C~n~~gsf~CncT~g~~gr~c~ 3977 (4289)
T KOG1219|consen 3934 GKRCEARGISECSKNVCG-TGGQCINIPGSFHCNCTPGILGRTCC 3977 (4289)
T ss_pred Cceeeccccccccccccc-CCceeeccCCceEeccChhHhcccCc
Confidence 555544335778888888 4558987766 89999999999885
No 13
>KOG1225|consensus
Probab=98.52 E-value=3.8e-07 Score=77.10 Aligned_cols=102 Identities=24% Similarity=0.573 Sum_probs=66.9
Q ss_pred eEeecCCCCCCCCCCccccCC----------CccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCC
Q psy15473 62 RIRIKSALGGNRTRGLALTRQ----------THYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGD 131 (190)
Q Consensus 62 ~c~c~~~~~g~~c~~~~~~~~----------~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~ 131 (190)
.|.|..+|.|..|........ -..|++||+|..|+. ..|..- |+.+. .+ +.+.|+|+++|.|.
T Consensus 235 ic~c~~~~~g~~c~~~~C~~~c~~~g~c~~G~CIC~~Gf~G~dC~e---~~Cp~~-cs~~g-~~--~~g~CiC~~g~~G~ 307 (525)
T KOG1225|consen 235 ICECPEGYFGPLCSTIYCPGGCTGRGQCVEGRCICPPGFTGDDCDE---LVCPVD-CSGGG-VC--VDGECICNPGYSGK 307 (525)
T ss_pred eeecCCceeCCccccccCCCCCcccceEeCCeEeCCCCCcCCCCCc---ccCCcc-cCCCc-ee--cCCEeecCCCcccc
Confidence 466666666655543222111 134999999999864 234422 55443 33 35799999999999
Q ss_pred CCc-------------------cCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473 132 NCE-------------------RCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184 (190)
Q Consensus 132 ~C~-------------------~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~ 184 (190)
.|+ .|.+||+|..|... +|.+++.|.+ + | .|..||.|++
T Consensus 308 dCs~~~cpadC~g~G~Ci~G~C~C~~Gy~G~~C~~~-------~C~~~g~cv~-----g-C-~C~~Gw~G~d 365 (525)
T KOG1225|consen 308 DCSIRRCPADCSGHGKCIDGECLCDEGYTGELCIQR-------ACSGGGQCVN-----G-C-KCKKGWRGPD 365 (525)
T ss_pred ccccccCCccCCCCCcccCCceEeCCCCcCCccccc-------ccCCCceecc-----C-c-eeccCccCCC
Confidence 885 46778888777632 3777777765 4 7 7888888877
No 14
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.51 E-value=1.8e-07 Score=54.58 Aligned_cols=40 Identities=53% Similarity=1.288 Sum_probs=33.9
Q ss_pred CCCcCCCC---CccCCCCeeeCCCCCCCCCCccCCCCcccCCC
Q psy15473 106 CNCNGHAD---ICDAESGRCICQDNTGGDNCERCARGYYGNAL 145 (190)
Q Consensus 106 c~C~~~~~---~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c 145 (190)
+.|+.++. .|+..+|+|.|+++|+|.+|++|++|||+.+-
T Consensus 2 C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44 (50)
T ss_pred CcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence 45665554 69888999999999999999999999999753
No 15
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.37 E-value=5.8e-07 Score=51.44 Aligned_cols=30 Identities=50% Similarity=1.325 Sum_probs=28.3
Q ss_pred CCccCCCCeeeCCCCCCCCCCccCCCCccc
Q psy15473 113 DICDAESGRCICQDNTGGDNCERCARGYYG 142 (190)
Q Consensus 113 ~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g 142 (190)
..|++.+|+|.|+++|+|.+|++|++||||
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 11 GTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 478888999999999999999999999999
No 16
>KOG1214|consensus
Probab=98.34 E-value=1.8e-06 Score=75.45 Aligned_cols=135 Identities=20% Similarity=0.540 Sum_probs=86.5
Q ss_pred cCCCCcccCCCC-CCCCCCcCC--CCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccCCCCcccC-
Q psy15473 18 RCARGYYGNALE-GAVTDCKQC--PCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHE- 93 (190)
Q Consensus 18 ~C~~g~~g~~c~-~~~~~C~~~--~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~- 93 (190)
.|..||.|..-. .++++|..+ .|..++.|++.+++ ++|.|..+|. |.+.
T Consensus 719 ecs~g~~gdgr~c~d~~eca~~~~~CGp~s~Cin~pg~--------~rceC~~gy~-------------------F~dd~ 771 (1289)
T KOG1214|consen 719 ECSSGYQGDGRNCVDENECATGFHRCGPNSVCINLPGS--------YRCECRSGYE-------------------FADDR 771 (1289)
T ss_pred EEeeccCCCCCCCCChhhhccCCCCCCCCceeecCCCc--------eeEEEeecce-------------------eccCC
Confidence 477777765322 345688765 59999999998876 4566655542 1111
Q ss_pred -CCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCC-CCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCCCceecCCCC
Q psy15473 94 -PTSGGAFSRCVPCNCNGHADICDAESGRCICQDNT-GGDNCERCARGYYGNALE-GAVTDCKQCPCPNQGPCVQLDDDQ 170 (190)
Q Consensus 94 -~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~-~G~~C~~C~~G~~g~~c~-~~~~~C~~~~C~~~g~C~~~~~~~ 170 (190)
.|.. ..+.=.+..|......|.. .+++.|...= .-..| +|+|||.|+.-. .+.++|.+..|+..++|+... ++
T Consensus 772 ~tCV~-i~~pap~n~Ce~g~h~C~i-~g~a~c~~hGgs~y~C-~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntp-gs 847 (1289)
T KOG1214|consen 772 HTCVL-ITPPAPANPCEDGSHTCAI-AGQARCVHHGGSTYSC-ACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTP-GS 847 (1289)
T ss_pred cceEE-ecCCCCCCccccCccccCc-CCceEEEecCCceEEE-eecCCccCCccccccccccCccccCCCceEecCC-Cc
Confidence 0100 0011122345433346643 5677666433 33466 799999887533 355889999999999999876 77
Q ss_pred eeeCCCCCCCCCCC
Q psy15473 171 VVCSECPRGYGGEK 184 (190)
Q Consensus 171 ~~C~~C~~G~~G~~ 184 (190)
+.| .|++||.|.-
T Consensus 848 fsC-~C~pGy~GDG 860 (1289)
T KOG1214|consen 848 FSC-RCQPGYYGDG 860 (1289)
T ss_pred cee-ecccCccCCC
Confidence 999 9999999864
No 17
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.32 E-value=1.9e-07 Score=54.22 Aligned_cols=33 Identities=36% Similarity=1.097 Sum_probs=28.6
Q ss_pred CCccCCCCeeeCCCCCCCCCCccCCCCcccCCC
Q psy15473 113 DICDAESGRCICQDNTGGDNCERCARGYYGNAL 145 (190)
Q Consensus 113 ~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c 145 (190)
..|++.+|+|.|+++|+|.+|++|+++||+.+.
T Consensus 11 ~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 11 QTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp SSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 589889999999999999999999999999764
No 18
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.07 E-value=5.4e-06 Score=48.27 Aligned_cols=29 Identities=45% Similarity=0.980 Sum_probs=26.1
Q ss_pred CCceeecCCCCCCCCCccCCCCcccCCCC
Q psy15473 1 MFRRCICQDNTGGDNCERCARGYYGNALE 29 (190)
Q Consensus 1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c~ 29 (190)
.+|+|.|+++|+|++|++|++||++....
T Consensus 17 ~~G~C~C~~~~~G~~C~~C~~g~~~~~~~ 45 (50)
T cd00055 17 GTGQCECKPNTTGRRCDRCAPGYYGLPSQ 45 (50)
T ss_pred CCCEEeCCCcCCCCCCCCCCCCCccCCCC
Confidence 36899999999999999999999998653
No 19
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=98.03 E-value=1.8e-06 Score=45.41 Aligned_cols=32 Identities=44% Similarity=1.169 Sum_probs=27.2
Q ss_pred CcCCCCCCCCCceecCCCCeeeCCCCCCCCCCC
Q psy15473 152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGEK 184 (190)
Q Consensus 152 C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~ 184 (190)
|.+.+|.++|+|++.....++| .|++||+|++
T Consensus 1 C~~~~C~n~g~C~~~~~~~y~C-~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGGGYTC-ECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEEEEEESTSEEEE-EEBTTEESTT
T ss_pred CCCCcCCCCeEEEeCCCCCEEe-ECCCCCccCC
Confidence 4566999999999876566999 9999999975
No 20
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.02 E-value=4.5e-06 Score=47.70 Aligned_cols=25 Identities=48% Similarity=1.151 Sum_probs=23.6
Q ss_pred CCceeecCCCCCCCCCccCCCCccc
Q psy15473 1 MFRRCICQDNTGGDNCERCARGYYG 25 (190)
Q Consensus 1 ~~~~C~C~~g~~G~~C~~C~~g~~g 25 (190)
++|+|.|+++|+|++|++|++||||
T Consensus 16 ~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 16 DTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCCEEECCCCCCCCCCCcCCCCcCC
Confidence 3689999999999999999999998
No 21
>KOG4260|consensus
Probab=98.02 E-value=1.1e-05 Score=62.31 Aligned_cols=135 Identities=24% Similarity=0.574 Sum_probs=77.5
Q ss_pred cCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCccccCCCccC
Q psy15473 7 CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQ 86 (190)
Q Consensus 7 C~~g~~G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~~~~~~~C 86 (190)
|++|+.|++|..|+-|. .-||..+|.|..... ......|.|.++|+|+.| .+|
T Consensus 132 Cp~gtyGpdCl~Cpggs-------------er~C~GnG~C~GdGs-----R~GsGkCkC~~GY~Gp~C---------~~C 184 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGS-------------ERPCFGNGSCHGDGS-----REGSGKCKCETGYTGPLC---------RYC 184 (350)
T ss_pred cCCCCcCCccccCCCCC-------------cCCcCCCCcccCCCC-----CCCCCcccccCCCCCccc---------ccc
Confidence 44555555555554442 246777787754321 223468999999999887 458
Q ss_pred CCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCC-CCCCCCc--CCCCCCCCCc
Q psy15473 87 LTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE-GAVTDCK--QCPCPNQGPC 163 (190)
Q Consensus 87 ~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~-~~~~~C~--~~~C~~~g~C 163 (190)
-++|+-..... ..-.|..| .. .|. +. | .+-....|.+|+.||.=+.-. .++++|. +.+|...-.|
T Consensus 185 g~eyfes~Rne-~~lvCt~C--h~---~C~---~~--C-sg~~~k~C~kCkkGW~lde~gCvDvnEC~~ep~~c~~~qfC 252 (350)
T KOG4260|consen 185 GIEYFESSRNE-QHLVCTAC--HE---GCL---GV--C-SGESSKGCSKCKKGWKLDEEGCVDVNECQNEPAPCKAHQFC 252 (350)
T ss_pred chHHHHhhccc-ccchhhhh--hh---hhh---cc--c-CCCCCCChhhhcccceecccccccHHHHhcCCCCCChhhee
Confidence 88888654321 01223322 10 111 01 1 122234566777777543211 2566775 5677777788
Q ss_pred eecCCCCeeeCCCCCCCCC
Q psy15473 164 VQLDDDQVVCSECPRGYGG 182 (190)
Q Consensus 164 ~~~~~~~~~C~~C~~G~~G 182 (190)
++.. ++|.| ..++||.+
T Consensus 253 vNte-GSf~C-~dk~Gy~~ 269 (350)
T KOG4260|consen 253 VNTE-GSFKC-EDKEGYKK 269 (350)
T ss_pred ecCC-CceEe-cccccccC
Confidence 8865 77999 78999876
No 22
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=97.92 E-value=3.9e-06 Score=48.64 Aligned_cols=28 Identities=32% Similarity=0.940 Sum_probs=23.8
Q ss_pred CCceeecCCCCCCCCCccCCCCcccCCC
Q psy15473 1 MFRRCICQDNTGGDNCERCARGYYGNAL 28 (190)
Q Consensus 1 ~~~~C~C~~g~~G~~C~~C~~g~~g~~c 28 (190)
++|+|+|+++|+|++|++|++|||+...
T Consensus 16 ~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 16 STGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp TCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CCCEEeccccccCCcCcCCCCccccccC
Confidence 4789999999999999999999999865
No 23
>KOG1217|consensus
Probab=97.91 E-value=0.00013 Score=61.29 Aligned_cols=142 Identities=24% Similarity=0.538 Sum_probs=84.4
Q ss_pred cCCCCcccCCCCCCCCCCc--CCCCCCCCCceecCCcccccCCCceeEeecCCCCCCCCCCc-----cccCCCccCCCCc
Q psy15473 18 RCARGYYGNALEGAVTDCK--QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGNRTRGL-----ALTRQTHYQLTGY 90 (190)
Q Consensus 18 ~C~~g~~g~~c~~~~~~C~--~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~-----~~~~~~~~C~~G~ 90 (190)
.|..||.+..+....++|. ..+|.++++|.+.... +.|.|..+|.+..++.. ........+.+++
T Consensus 155 ~C~~g~~~~~~~~~~~~C~~~~~~c~~~~~C~~~~~~--------~~C~c~~~~~~~~~~~~~~~~~c~~~~~~~~~~g~ 226 (487)
T KOG1217|consen 155 SCTEGYEGEPCETDLDECIQYSSPCQNGGTCVNTGGS--------YLCSCPPGYTGSTCETTGNGGTCVDSVACSCPPGA 226 (487)
T ss_pred eeCCCcccccccccccccccCCCCcCCCcccccCCCC--------eeEeCCCCccCCcCcCCCCCceEecceeccCCCCC
Confidence 4666666666665546777 4468888888887654 57889989888766533 1111113456666
Q ss_pred ccCCCCCCCCCCcccCCCcCCCCCccCCC--CeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCC-CCCCCCceecC
Q psy15473 91 HHEPTSGGAFSRCVPCNCNGHADICDAES--GRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCP-CPNQGPCVQLD 167 (190)
Q Consensus 91 ~g~~~~~~~~~~C~~c~C~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~-C~~~g~C~~~~ 167 (190)
.+..+.. ....|..- . ..|.... ..|.++++|.+..+ ....+++.|.... |.++++|+...
T Consensus 227 ~~~~c~~-~~~~~~~~----~-~~c~~~~~~~~C~~~~g~~~~~~----------~~~~~~~~C~~~~~c~~~~~C~~~~ 290 (487)
T KOG1217|consen 227 RGPECEV-SIVECASG----D-GTCVNTVGSYTCRCPEGYTGDAC----------VTCVDVDSCALIASCPNGGTCVNVP 290 (487)
T ss_pred CCCCccc-ccccccCC----C-CcccccCCceeeeCCCCcccccc----------ceeeeccccCCCCccCCCCeeecCC
Confidence 6655542 11222211 1 1332221 24555555444432 0123446677653 88899999875
Q ss_pred CCCeeeCCCCCCCCCCCC
Q psy15473 168 DDQVVCSECPRGYGGEKM 185 (190)
Q Consensus 168 ~~~~~C~~C~~G~~G~~C 185 (190)
+.+.| .|++||.|..|
T Consensus 291 -~~~~C-~C~~g~~g~~~ 306 (487)
T KOG1217|consen 291 -GSYRC-TCPPGFTGRLC 306 (487)
T ss_pred -Cccee-eCCCCCCCCCC
Confidence 44899 89999999997
No 24
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=97.61 E-value=8.4e-05 Score=40.39 Aligned_cols=36 Identities=39% Similarity=0.981 Sum_probs=29.3
Q ss_pred CCCCcC-CCCCCCCCceecCCCCeeeCCCCCCCC-CCCCC
Q psy15473 149 VTDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYG-GEKMS 186 (190)
Q Consensus 149 ~~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~-G~~C~ 186 (190)
+++|.. .+|.++++|++.. +.+.| .|++||. |.+|+
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~-g~~~C-~C~~g~~~g~~C~ 39 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTV-GSYRC-ECPPGYTDGRNCE 39 (39)
T ss_pred cccCcCCCCcCCCCEeECCC-CCeEe-ECCCCCccCCcCC
Confidence 355766 6898889999875 56999 8999999 98885
No 25
>KOG1217|consensus
Probab=97.48 E-value=0.0016 Score=54.65 Aligned_cols=56 Identities=32% Similarity=0.840 Sum_probs=36.6
Q ss_pred CCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473 126 DNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183 (190)
Q Consensus 126 ~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~ 183 (190)
..+....| .|..+|.|..|+...++|...++..++.|.....+.+.| .|+.+|.+.
T Consensus 334 ~~~~~~~C-~c~~~~~g~~C~~~~~~C~~~~~~~~~~c~~~~~~~~~c-~~~~~~~~~ 389 (487)
T KOG1217|consen 334 GSFGGFRC-ACGPGFTGRRCEDSNDECASSPCCPGGTCVNETPGSYRC-ACPAGFAGK 389 (487)
T ss_pred CCCCCCCc-CCCCCCCCCccccCCccccCCccccCCEeccCCCCCeEe-cCCCccccC
Confidence 33444445 455566666665332467777788889998732356899 899998874
No 26
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=97.32 E-value=0.00032 Score=37.59 Aligned_cols=35 Identities=37% Similarity=0.947 Sum_probs=28.0
Q ss_pred CCCcC-CCCCCCCCceecCCCCeeeCCCCCCCCCCCCC
Q psy15473 150 TDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGGEKMS 186 (190)
Q Consensus 150 ~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~ 186 (190)
++|.. .+|.++++|.+.. +.+.| .|++||.|.+|+
T Consensus 3 ~~C~~~~~C~~~~~C~~~~-~~~~C-~C~~g~~g~~C~ 38 (38)
T cd00054 3 DECASGNPCQNGGTCVNTV-GSYRC-SCPPGYTGRNCE 38 (38)
T ss_pred ccCCCCCCcCCCCEeECCC-CCeEe-ECCCCCcCCcCC
Confidence 45665 6788888998765 55899 899999998874
No 27
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=97.21 E-value=0.00023 Score=37.23 Aligned_cols=31 Identities=26% Similarity=0.636 Sum_probs=23.3
Q ss_pred CcCCCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473 35 CKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN 72 (190)
Q Consensus 35 C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~ 72 (190)
|.+.||+|+|+|++.... .+.|.|+++|.|.
T Consensus 1 C~~~~C~n~g~C~~~~~~-------~y~C~C~~G~~G~ 31 (32)
T PF00008_consen 1 CSSNPCQNGGTCIDLPGG-------GYTCECPPGYTGK 31 (32)
T ss_dssp TTTTSSTTTEEEEEESTS-------EEEEEEBTTEEST
T ss_pred CCCCcCCCCeEEEeCCCC-------CEEeECCCCCccC
Confidence 567799999999998722 2678887777663
No 28
>KOG4260|consensus
Probab=97.21 E-value=0.00025 Score=54.90 Aligned_cols=26 Identities=23% Similarity=0.703 Sum_probs=23.1
Q ss_pred CceeecCCCCCCCCCccCCCCcccCC
Q psy15473 2 FRRCICQDNTGGDNCERCARGYYGNA 27 (190)
Q Consensus 2 ~~~C~C~~g~~G~~C~~C~~g~~g~~ 27 (190)
+|.|.|..||+|+.|..|-++|+-..
T Consensus 167 sGkCkC~~GY~Gp~C~~Cg~eyfes~ 192 (350)
T KOG4260|consen 167 SGKCKCETGYTGPLCRYCGIEYFESS 192 (350)
T ss_pred CCcccccCCCCCccccccchHHHHhh
Confidence 57899999999999999999998543
No 29
>KOG3509|consensus
Probab=97.15 E-value=0.0058 Score=55.53 Aligned_cols=136 Identities=27% Similarity=0.588 Sum_probs=78.9
Q ss_pred CceeecCCCCCCCCCccCCCCcccCCCC-CCCCCCcCCCCCCCCC-ceecCCcccccCCCceeEeecCCCCCCCCCCccc
Q psy15473 2 FRRCICQDNTGGDNCERCARGYYGNALE-GAVTDCKQCPCPNQGP-CVQLDDDQVSNLGNRTRIRIKSALGGNRTRGLAL 79 (190)
Q Consensus 2 ~~~C~C~~g~~G~~C~~C~~g~~g~~c~-~~~~~C~~~~C~~~g~-C~~~~~~~~~~~~~~~~c~c~~~~~g~~c~~~~~ 79 (190)
+.+|+|+.++.|..|+.|.++|.-.... .....+..+.|..|+. |.+... ..-.|...+.
T Consensus 717 ~~~C~c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~---------~nt~~q~~~~--------- 778 (964)
T KOG3509|consen 717 VEQCQCPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLG---------YNTDCQNNTE--------- 778 (964)
T ss_pred ccccccCccccCcccccccccccccccCCcCcccCcccccCCCccccccccc---------ccccccccCc---------
Confidence 3579999999999999999998755422 1233455677776654 332211 0111222222
Q ss_pred cCCCccCCCCcccCCCCCCCCCCccc-----CCCcCCCCC---ccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCC
Q psy15473 80 TRQTHYQLTGYHHEPTSGGAFSRCVP-----CNCNGHADI---CDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVT 150 (190)
Q Consensus 80 ~~~~~~C~~G~~g~~~~~~~~~~C~~-----c~C~~~~~~---C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~ 150 (190)
...+.+|.+||+++...... ..+.+ -+++.+.-. ++...-.| .|.++++|..|+.+.++|++...+....
T Consensus 779 ~~~~~~~~~g~~~da~~g~~-~D~~p~~~l~~~~~~~~r~~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atdgS~~ 857 (964)
T KOG3509|consen 779 GDRCELCSPGTYGDARRGTP-EDCRPATALTIQCSCNNRSPLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATDGSPY 857 (964)
T ss_pred cceeeecCCCccccCccCCc-ccCCccchhhhhhhhcccCccccccCCCCcccCCCCccccchhhhccccccccCcCCcc
Confidence 23356799999987643321 22222 111111111 11112256 5899999999999999999987665444
Q ss_pred CCcCCC
Q psy15473 151 DCKQCP 156 (190)
Q Consensus 151 ~C~~~~ 156 (190)
.+.+..
T Consensus 858 ~~~~~~ 863 (964)
T KOG3509|consen 858 DCSPCL 863 (964)
T ss_pred cccccc
Confidence 444433
No 30
>KOG1226|consensus
Probab=96.79 E-value=0.0016 Score=57.08 Aligned_cols=89 Identities=20% Similarity=0.499 Sum_probs=48.6
Q ss_pred ccCCCCcccCCCCCCCCCCccc----CCCcCCC--CCccCC----CCeeeCCCCCCCCCCccCCCCcccCCCCCCCCCCc
Q psy15473 84 HYQLTGYHHEPTSGGAFSRCVP----CNCNGHA--DICDAE----SGRCICQDNTGGDNCERCARGYYGNALEGAVTDCK 153 (190)
Q Consensus 84 ~~C~~G~~g~~~~~~~~~~C~~----c~C~~~~--~~C~~~----~g~C~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~ 153 (190)
..|.+||.|+.|+... +.=.+ ..|.... ..|... -|+|.|.+...| -+||..|+-+--.|.
T Consensus 480 C~C~~G~~G~~CEC~~-~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~--------~i~G~fCECDnfsC~ 550 (783)
T KOG1226|consen 480 CRCDEGWLGKKCECST-DELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNG--------KIYGKFCECDNFSCE 550 (783)
T ss_pred eecCCCCCCCcccCCc-cccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCC--------ceeeeeeeccCcccc
Confidence 4588999999886421 10010 1132221 134321 134444433331 245666663333344
Q ss_pred CC---CCCCCCCceecCCCCeeeCCCCCCCCCCCCCC
Q psy15473 154 QC---PCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP 187 (190)
Q Consensus 154 ~~---~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~ 187 (190)
.. -|..+|.|.- ++| .|.+||+|..|+-
T Consensus 551 r~~g~lC~g~G~C~C-----G~C-vC~~GwtG~~C~C 581 (783)
T KOG1226|consen 551 RHKGVLCGGHGRCEC-----GRC-VCNPGWTGSACNC 581 (783)
T ss_pred cccCcccCCCCeEeC-----CcE-EcCCCCccCCCCC
Confidence 32 3777888866 689 9999999999863
No 31
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.72 E-value=0.0012 Score=34.46 Aligned_cols=26 Identities=35% Similarity=0.783 Sum_probs=22.3
Q ss_pred CCCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473 156 PCPNQGPCVQLDDDQVVCSECPRGYGGEKM 185 (190)
Q Consensus 156 ~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C 185 (190)
.|.++|+|+... ++| .|.+||+|+.|
T Consensus 7 ~C~~~G~C~~~~---g~C-~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGTCVSPC---GRC-VCDSGYTGPDC 32 (32)
T ss_pred ccCCCCEEeCCC---CEE-ECCCCCcCCCC
Confidence 588999998753 799 99999999886
No 32
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=96.67 E-value=0.0024 Score=33.49 Aligned_cols=31 Identities=39% Similarity=0.946 Sum_probs=25.0
Q ss_pred CCCCCCCCCceecCCCCeeeCCCCCCCCCC-CCC
Q psy15473 154 QCPCPNQGPCVQLDDDQVVCSECPRGYGGE-KMS 186 (190)
Q Consensus 154 ~~~C~~~g~C~~~~~~~~~C~~C~~G~~G~-~C~ 186 (190)
..+|.+++.|++.. +.++| .|+.||.|. .|+
T Consensus 5 ~~~C~~~~~C~~~~-~~~~C-~C~~g~~g~~~C~ 36 (36)
T cd00053 5 SNPCSNGGTCVNTP-GSYRC-VCPPGYTGDRSCE 36 (36)
T ss_pred CCCCCCCCEEecCC-CCeEe-ECCCCCcccCCcC
Confidence 45787889998876 55999 999999998 653
No 33
>smart00051 DSL delta serrate ligand.
Probab=96.56 E-value=0.0037 Score=38.06 Aligned_cols=43 Identities=28% Similarity=0.440 Sum_probs=29.8
Q ss_pred cCCCCcccCCCCCCCCCCcccC-CCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473 85 YQLTGYHHEPTSGGAFSRCVPC-NCNGHADICDAESGRCICQDNTGGDNC 133 (190)
Q Consensus 85 ~C~~G~~g~~~~~~~~~~C~~c-~C~~~~~~C~~~~g~C~C~~g~~G~~C 133 (190)
.|.++|+|..|+ ..|.+- ....+ -.|++ .|.++|.+||.|..|
T Consensus 20 ~C~~~~yG~~C~----~~C~~~~d~~~~-~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 20 TCDENYYGEGCN----KFCRPRDDFFGH-YTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred eCCCCCcCCccC----CEeCcCccccCC-ccCCc-CCCEecCCCCcCCCC
Confidence 378888988875 345432 12323 37887 699999999999876
No 34
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.53 E-value=0.00084 Score=27.68 Aligned_cols=13 Identities=38% Similarity=0.948 Sum_probs=9.3
Q ss_pred eeecCCCCCCCCC
Q psy15473 4 RCICQDNTGGDNC 16 (190)
Q Consensus 4 ~C~C~~g~~G~~C 16 (190)
.|+|++||+|++|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4788888888876
No 35
>KOG3509|consensus
Probab=96.51 E-value=0.0083 Score=54.57 Aligned_cols=118 Identities=31% Similarity=0.573 Sum_probs=76.1
Q ss_pred eEeecCCCCCCCCCCccccCCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCc
Q psy15473 62 RIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGY 140 (190)
Q Consensus 62 ~c~c~~~~~g~~c~~~~~~~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~ 140 (190)
.|.|+.++.|.+| ..|.++|.-..........+..+.|..|+..|....+.+ .|+.++.|.+|+.|.+||
T Consensus 719 ~C~c~~g~~G~~c---------e~c~e~~~ls~t~~~~~~~~~~c~~~~h~~~c~~~~~~nt~~q~~~~~~~~~~~~~g~ 789 (964)
T KOG3509|consen 719 QCQCPKGLVGTSC---------EDCAEGYTLSTTGGLYPGLCEDCECNSHISQCEDDLGYNTDCQNNTEGDRCELCSPGT 789 (964)
T ss_pred ccccCccccCccc---------ccccccccccccCCcCcccCcccccCCCcccccccccccccccccCccceeeecCCCc
Confidence 4556666666554 345555553332222334566677888888898878888 699999999999999999
Q ss_pred ccCCCCCCCCCCcC-C----C--CCCCCCceecCCCCeeeCCCCCCCCCCCCCCCC
Q psy15473 141 YGNALEGAVTDCKQ-C----P--CPNQGPCVQLDDDQVVCSECPRGYGGEKMSPGA 189 (190)
Q Consensus 141 ~g~~c~~~~~~C~~-~----~--C~~~g~C~~~~~~~~~C~~C~~G~~G~~C~~c~ 189 (190)
+++.-...+.++.+ . + +.+. +..........|.-|+++++|.+|++++
T Consensus 790 ~~da~~g~~~D~~p~~~l~~~~~~~~r-~~l~~~~~~~~~~~~p~~~~g~~~~~~~ 844 (964)
T KOG3509|consen 790 YGDARRGTPEDCRPATALTIQCSCNNR-SPLSCDGFGPGCLLCPHNTEGTTCERVK 844 (964)
T ss_pred cccCccCCcccCCccchhhhhhhhccc-CccccccCCCCcccCCCCccccchhhhc
Confidence 99876654444544 1 1 1111 1122222335676789999999998764
No 36
>smart00181 EGF Epidermal growth factor-like domain.
Probab=96.47 E-value=0.0038 Score=32.91 Aligned_cols=32 Identities=34% Similarity=1.012 Sum_probs=24.4
Q ss_pred CcC-CCCCCCCCceecCCCCeeeCCCCCCCCC-CCCC
Q psy15473 152 CKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGG-EKMS 186 (190)
Q Consensus 152 C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G-~~C~ 186 (190)
|.. .+|.++ .|++.. +.++| .|++||.| ..|+
T Consensus 2 C~~~~~C~~~-~C~~~~-~~~~C-~C~~g~~g~~~C~ 35 (35)
T smart00181 2 CASGGPCSNG-TCINTP-GSYTC-SCPPGYTGDKRCE 35 (35)
T ss_pred CCCcCCCCCC-EEECCC-CCeEe-ECCCCCccCCccC
Confidence 344 578777 888774 66999 99999999 6664
No 37
>smart00051 DSL delta serrate ligand.
Probab=96.45 E-value=0.0036 Score=38.14 Aligned_cols=43 Identities=21% Similarity=0.442 Sum_probs=28.8
Q ss_pred cCCCCcccCCCCCCCCCCcC-CCCCCCCCceecCCCCeeeCCCCCCCCCCCC
Q psy15473 135 RCARGYYGNALEGAVTDCKQ-CPCPNQGPCVQLDDDQVVCSECPRGYGGEKM 185 (190)
Q Consensus 135 ~C~~G~~g~~c~~~~~~C~~-~~C~~~g~C~~~~~~~~~C~~C~~G~~G~~C 185 (190)
.|.++|||..|+ ..|.+ .....+.+|.. . +.+ .|++||.|+.|
T Consensus 20 ~C~~~~yG~~C~---~~C~~~~d~~~~~~Cd~-~---G~~-~C~~Gw~G~~C 63 (63)
T smart00051 20 TCDENYYGEGCN---KFCRPRDDFFGHYTCDE-N---GNK-GCLEGWMGPYC 63 (63)
T ss_pred eCCCCCcCCccC---CEeCcCccccCCccCCc-C---CCE-ecCCCCcCCCC
Confidence 466677777765 23443 23466778854 2 677 89999999886
No 38
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=96.34 E-value=0.0042 Score=32.40 Aligned_cols=26 Identities=38% Similarity=1.117 Sum_probs=20.9
Q ss_pred CCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473 107 NCNGHADICDAESGRCICQDNTGGDNC 133 (190)
Q Consensus 107 ~C~~~~~~C~~~~g~C~C~~g~~G~~C 133 (190)
.|++++ +|+...++|+|.++|.|..|
T Consensus 7 ~C~~~G-~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHG-TCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCC-EEeCCCCEEECCCCCcCCCC
Confidence 466666 88776799999999999865
No 39
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=96.14 E-value=0.0024 Score=35.49 Aligned_cols=31 Identities=35% Similarity=1.101 Sum_probs=25.2
Q ss_pred CCCCcC--CCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473 149 VTDCKQ--CPCPNQGPCVQLDDDQVVCSECPRGYG 181 (190)
Q Consensus 149 ~~~C~~--~~C~~~g~C~~~~~~~~~C~~C~~G~~ 181 (190)
+++|.. ..|..+++|++.. |+|+| .|++||.
T Consensus 2 idEC~~~~~~C~~~~~C~N~~-Gsy~C-~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTE-GSYSC-SCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEET-TEEEE-EESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcCC-CCEEe-eCCCCcE
Confidence 466764 4588889999987 77999 9999997
No 40
>KOG1214|consensus
Probab=96.02 E-value=0.021 Score=50.94 Aligned_cols=46 Identities=20% Similarity=0.491 Sum_probs=38.0
Q ss_pred cCCCCcccCCCC-CCCCCCcCCCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473 18 RCARGYYGNALE-GAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG 71 (190)
Q Consensus 18 ~C~~g~~g~~c~-~~~~~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g 71 (190)
.|.|||.|+.-. .+.++|.+..|+..+.|++.++. +.|.|.++|.|
T Consensus 812 ~CLPGfsGDG~~c~dvDeC~psrChp~A~Cyntpgs--------fsC~C~pGy~G 858 (1289)
T KOG1214|consen 812 ACLPGFSGDGHQCTDVDECSPSRCHPAATCYNTPGS--------FSCRCQPGYYG 858 (1289)
T ss_pred eecCCccCCccccccccccCccccCCCceEecCCCc--------ceeecccCccC
Confidence 699999988655 35689999999999999998865 57888888776
No 41
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=95.98 E-value=0.013 Score=31.45 Aligned_cols=31 Identities=26% Similarity=0.602 Sum_probs=22.0
Q ss_pred CCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473 32 VTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG 70 (190)
Q Consensus 32 ~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~ 70 (190)
+++|.. .+|.++++|++..+. +.|.|+.+|.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~g~--------~~C~C~~g~~ 33 (39)
T smart00179 2 IDECASGNPCQNGGTCVNTVGS--------YRCECPPGYT 33 (39)
T ss_pred cccCcCCCCcCCCCEeECCCCC--------eEeECCCCCc
Confidence 467877 789998899877654 4566666655
No 42
>KOG1388|consensus
Probab=95.30 E-value=0.013 Score=43.99 Aligned_cols=77 Identities=34% Similarity=0.891 Sum_probs=52.9
Q ss_pred ccCCCcCCCCCccCCCCee-eCCCCCCCCCCccCCCCcccCCCCCCCCCCcCCCCCCCCC-ceecCCCCeeeCCC-CCCC
Q psy15473 104 VPCNCNGHADICDAESGRC-ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP-CVQLDDDQVVCSEC-PRGY 180 (190)
Q Consensus 104 ~~c~C~~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~-C~~~~~~~~~C~~C-~~G~ 180 (190)
-.+.|++++ .|.. +..| .|..+.+|..|++|..||+|+. +-..|.++.|..++. |+... .+| .| ..|+
T Consensus 50 P~~~cNGh~-~c~t-~~v~~~~~N~~~g~~c~kc~~g~~Gdt---N~g~c~~~~~~g~~~~~~~~~---~~c-~c~~kgv 120 (217)
T KOG1388|consen 50 PLCQCNGHS-DCNT-QHVCWRCENGTTGAHCEKCIVGFYGDT---NGGKCQPCDCNGGASACVTLT---GKC-FCTTKGV 120 (217)
T ss_pred hHHHhcCCC-Cccc-ceeeeeccCccccccCCceEEEEEecC---CCCccCHhhhcCCeeeeeccC---Ccc-ccccceE
Confidence 345577555 4533 3345 5888999999999999999972 225588887765543 33322 577 77 6799
Q ss_pred CCCCCCCCC
Q psy15473 181 GGEKMSPGA 189 (190)
Q Consensus 181 ~G~~C~~c~ 189 (190)
.|.+|+++.
T Consensus 121 vgd~c~~~e 129 (217)
T KOG1388|consen 121 VGDLCPKCE 129 (217)
T ss_pred ecccCcccc
Confidence 999988763
No 43
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=95.05 E-value=0.042 Score=28.95 Aligned_cols=33 Identities=27% Similarity=0.629 Sum_probs=22.0
Q ss_pred CCCCcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473 32 VTDCKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN 72 (190)
Q Consensus 32 ~~~C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~ 72 (190)
+++|.. .+|.+++.|.+..+. +.|.|+.+|.|.
T Consensus 2 ~~~C~~~~~C~~~~~C~~~~~~--------~~C~C~~g~~g~ 35 (38)
T cd00054 2 IDECASGNPCQNGGTCVNTVGS--------YRCSCPPGYTGR 35 (38)
T ss_pred cccCCCCCCcCCCCEeECCCCC--------eEeECCCCCcCC
Confidence 356776 689888888876543 456666665553
No 44
>KOG1218|consensus
Probab=94.65 E-value=0.51 Score=37.67 Aligned_cols=13 Identities=23% Similarity=0.657 Sum_probs=10.3
Q ss_pred CceeecCCCCCCC
Q psy15473 2 FRRCICQDNTGGD 14 (190)
Q Consensus 2 ~~~C~C~~g~~G~ 14 (190)
.+.|.|.++|+|.
T Consensus 14 ~~~c~c~~~~~g~ 26 (316)
T KOG1218|consen 14 SGQCFCDPGYTGR 26 (316)
T ss_pred CCceecCCCcccc
Confidence 4678888888885
No 45
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=94.20 E-value=0.018 Score=30.88 Aligned_cols=26 Identities=27% Similarity=0.816 Sum_probs=19.6
Q ss_pred CCCCCCCceecCCCCeeeCCCCCCCCCC
Q psy15473 156 PCPNQGPCVQLDDDQVVCSECPRGYGGE 183 (190)
Q Consensus 156 ~C~~~g~C~~~~~~~~~C~~C~~G~~G~ 183 (190)
.|+.+++|.... ++++| .|++||+|.
T Consensus 7 ~C~~nA~C~~~~-~~~~C-~C~~Gy~Gd 32 (36)
T PF12947_consen 7 GCHPNATCTNTG-GSYTC-TCKPGYEGD 32 (36)
T ss_dssp GS-TTCEEEE-T-TSEEE-EE-CEEECC
T ss_pred CCCCCcEeecCC-CCEEe-ECCCCCccC
Confidence 477789999886 47999 999999986
No 46
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=93.65 E-value=0.062 Score=29.72 Aligned_cols=31 Identities=19% Similarity=0.607 Sum_probs=22.8
Q ss_pred CCCCcC--CCCCCCCCceecCCcccccCCCceeEeecCCCC
Q psy15473 32 VTDCKQ--CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALG 70 (190)
Q Consensus 32 ~~~C~~--~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~ 70 (190)
+|+|+. ..|..++.|++..++ +.|.|+++|.
T Consensus 2 idEC~~~~~~C~~~~~C~N~~Gs--------y~C~C~~Gy~ 34 (42)
T PF07645_consen 2 IDECAEGPHNCPENGTCVNTEGS--------YSCSCPPGYE 34 (42)
T ss_dssp SSTTTTTSSSSSTTSEEEEETTE--------EEEEESTTEE
T ss_pred ccccCCCCCcCCCCCEEEcCCCC--------EEeeCCCCcE
Confidence 567875 368888999999876 5677666654
No 47
>KOG1218|consensus
Probab=93.55 E-value=1.3 Score=35.34 Aligned_cols=56 Identities=23% Similarity=0.559 Sum_probs=33.0
Q ss_pred cCCCCcccCCCCCCCCCCccc-CCCcCCCCCccCCCCeeeCCCCCCCCCCccCCCCcccCCCC
Q psy15473 85 YQLTGYHHEPTSGGAFSRCVP-CNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALE 146 (190)
Q Consensus 85 ~C~~G~~g~~~~~~~~~~C~~-c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~c~ 146 (190)
.|++||.+..+..... .|.. ..+.. +..|+..++.+.+.+.+.+ .|+.+|.+..+.
T Consensus 165 ~c~~g~~g~~~~~~~~-~c~~~~~~~~-g~~C~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 221 (316)
T KOG1218|consen 165 TCQPGFVGVFCVESCS-GCSPLTACEN-GAKCNRSTGSCLCYPGPSG----ACKGGFHGCACL 221 (316)
T ss_pred eccCCcccccccccCC-CcCCCcccCC-CCeeeccccccccCCCCcc----cccCCccCCcCc
Confidence 3888888887754221 1432 33443 2478777777777777765 455555555443
No 48
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=92.66 E-value=0.21 Score=25.66 Aligned_cols=28 Identities=29% Similarity=0.574 Sum_probs=18.6
Q ss_pred CCCCCCCCCceecCCcccccCCCceeEeecCCCCCC
Q psy15473 37 QCPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGGN 72 (190)
Q Consensus 37 ~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g~ 72 (190)
..+|.+++.|++.... +.|.|+.+|.|.
T Consensus 5 ~~~C~~~~~C~~~~~~--------~~C~C~~g~~g~ 32 (36)
T cd00053 5 SNPCSNGGTCVNTPGS--------YRCVCPPGYTGD 32 (36)
T ss_pred CCCCCCCCEEecCCCC--------eEeECCCCCccc
Confidence 5678888888876533 466666666553
No 49
>smart00181 EGF Epidermal growth factor-like domain.
Probab=90.60 E-value=0.45 Score=24.63 Aligned_cols=28 Identities=21% Similarity=0.559 Sum_probs=17.8
Q ss_pred CcC-CCCCCCCCceecCCcccccCCCceeEeecCCCCC
Q psy15473 35 CKQ-CPCPNQGPCVQLDDDQVSNLGNRTRIRIKSALGG 71 (190)
Q Consensus 35 C~~-~~C~~~g~C~~~~~~~~~~~~~~~~c~c~~~~~g 71 (190)
|.. .+|.++ .|++..+. +.|.|.++|.|
T Consensus 2 C~~~~~C~~~-~C~~~~~~--------~~C~C~~g~~g 30 (35)
T smart00181 2 CASGGPCSNG-TCINTPGS--------YTCSCPPGYTG 30 (35)
T ss_pred CCCcCCCCCC-EEECCCCC--------eEeECCCCCcc
Confidence 455 578887 78766433 56666666655
No 50
>KOG0196|consensus
Probab=88.15 E-value=0.82 Score=41.32 Aligned_cols=57 Identities=26% Similarity=0.733 Sum_probs=39.6
Q ss_pred CCeeeCCCCCC----CCCCccCCCCcccCCCCCCCCCCcCCCCCCCCCceecCCCCeeeCCCCCCCCC
Q psy15473 119 SGRCICQDNTG----GDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGG 182 (190)
Q Consensus 119 ~g~C~C~~g~~----G~~C~~C~~G~~g~~c~~~~~~C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~G 182 (190)
.|.|.|++||. +..|+.|++|||-..-.. ..|.+||-+... ...++..| .|..||.-
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~--~~C~~CP~~S~s----~~ega~~C-~C~~gyyR 318 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGD--SLCLPCPPNSHS----SSEGATSC-TCENGYYR 318 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCC--CCCCCCCCCCCC----CCCCCCcc-cccCCccc
Confidence 58999999984 579999999998655321 347776644322 12355788 88888863
No 51
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=88.00 E-value=0.19 Score=30.49 Aligned_cols=14 Identities=43% Similarity=1.004 Sum_probs=5.7
Q ss_pred eeecCCCCCCCCCc
Q psy15473 4 RCICQDNTGGDNCE 17 (190)
Q Consensus 4 ~C~C~~g~~G~~C~ 17 (190)
+-+|..+|-|+.|+
T Consensus 18 rv~C~~nyyG~~C~ 31 (63)
T PF01414_consen 18 RVVCDENYYGPNCS 31 (63)
T ss_dssp -----TTEETTTT-
T ss_pred EEECCCCCCCcccc
Confidence 34566777777776
No 52
>PHA02887 EGF-like protein; Provisional
Probab=87.12 E-value=0.47 Score=32.26 Aligned_cols=29 Identities=34% Similarity=0.906 Sum_probs=21.8
Q ss_pred CCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473 157 CPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP 187 (190)
Q Consensus 157 C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~ 187 (190)
|. +|+|.-. +-....| .|..||+|.+|+.
T Consensus 94 Ci-HG~C~yI~dL~epsC-rC~~GYtG~RCE~ 123 (126)
T PHA02887 94 CI-NGECMNIIDLDEKFC-ICNKGYTGIRCDE 123 (126)
T ss_pred ee-CCEEEccccCCCcee-ECCCCcccCCCCc
Confidence 55 4788543 2245899 9999999999985
No 53
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=86.63 E-value=0.1 Score=31.77 Aligned_cols=44 Identities=25% Similarity=0.381 Sum_probs=19.3
Q ss_pred cCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCCCCCCCCCC
Q psy15473 85 YQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQDNTGGDNC 133 (190)
Q Consensus 85 ~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~~g~~G~~C 133 (190)
.|.+.|+|..|. ..|.+..=....-+|+. +|.=+|.+||.|+.|
T Consensus 20 ~C~~nyyG~~C~----~~C~~~~d~~ghy~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 20 VCDENYYGPNCS----KFCKPRDDSFGHYTCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp ---TTEETTTT-----EE---EEETTEEEEE-S-S--EEE-TTEESTTS
T ss_pred ECCCCCCCcccc----CCcCCCcCCcCCcccCC-CCCCCCCCCCcCCCC
Confidence 477888888775 24554320001126764 677777788877765
No 54
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=85.14 E-value=0.63 Score=32.21 Aligned_cols=29 Identities=34% Similarity=0.902 Sum_probs=21.4
Q ss_pred CCCCCCceec-CCCCeeeCCCCCCCCCCCCCC
Q psy15473 157 CPNQGPCVQL-DDDQVVCSECPRGYGGEKMSP 187 (190)
Q Consensus 157 C~~~g~C~~~-~~~~~~C~~C~~G~~G~~C~~ 187 (190)
|.+ |+|... +-....| .|..||+|.+||.
T Consensus 53 ClH-G~C~yI~dl~~~~C-rC~~GYtGeRCEh 82 (139)
T PHA03099 53 CLH-GDCIHARDIDGMYC-RCSHGYTGIRCQH 82 (139)
T ss_pred eEC-CEEEeeccCCCcee-ECCCCcccccccc
Confidence 554 578543 2245899 9999999999985
No 55
>KOG0196|consensus
Probab=83.38 E-value=1.9 Score=39.16 Aligned_cols=41 Identities=24% Similarity=0.706 Sum_probs=29.0
Q ss_pred CceeecCCCCC----CCCCccCCCCcccCCCCCCCCCCcCCCCCCCC
Q psy15473 2 FRRCICQDNTG----GDNCERCARGYYGNALEGAVTDCKQCPCPNQG 44 (190)
Q Consensus 2 ~~~C~C~~g~~----G~~C~~C~~g~~g~~c~~~~~~C~~~~C~~~g 44 (190)
.|+|.|++||. |..|+.|++|||=..- ....|.+||=+.++
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~--~~~~C~~CP~~S~s 302 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQ--GDSLCLPCPPNSHS 302 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCC--CCCCCCCCCCCCCC
Confidence 47899999994 6889999999985532 12357766655443
No 56
>KOG1388|consensus
Probab=83.21 E-value=0.71 Score=34.92 Aligned_cols=53 Identities=30% Similarity=0.847 Sum_probs=40.1
Q ss_pred CCCccCCCCcccCCCCCCCCCCcccCCCcCCCCCccCCCCeeeCC-CCCCCCCCccCC
Q psy15473 81 RQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQ-DNTGGDNCERCA 137 (190)
Q Consensus 81 ~~~~~C~~G~~g~~~~~~~~~~C~~c~C~~~~~~C~~~~g~C~C~-~g~~G~~C~~C~ 137 (190)
..+..|..||+|.. . ...|+++.|.+.+..|...+++|.|+ -++.|..|+.|-
T Consensus 76 ~~c~kc~~g~~Gdt-N---~g~c~~~~~~g~~~~~~~~~~~c~c~~kgvvgd~c~~~e 129 (217)
T KOG1388|consen 76 AHCEKCIVGFYGDT-N---GGKCQPCDCNGGASACVTLTGKCFCTTKGVVGDLCPKCE 129 (217)
T ss_pred ccCCceEEEEEecC-C---CCccCHhhhcCCeeeeeccCCccccccceEecccCcccc
Confidence 34566899999962 2 25789999998777888889999984 577888887543
No 57
>KOG3514|consensus
Probab=80.67 E-value=1.3 Score=41.29 Aligned_cols=37 Identities=30% Similarity=0.796 Sum_probs=30.8
Q ss_pred CCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCCCC
Q psy15473 151 DCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSPGA 189 (190)
Q Consensus 151 ~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~c~ 189 (190)
.|.+.||.|+|+|...- ..+.| .|. .+|.|+.||+.|
T Consensus 625 ~C~~nPC~N~g~C~egw-NrfiC-DCs~T~~~G~~CerE~ 662 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGW-NRFIC-DCSGTGFEGRTCEREA 662 (1591)
T ss_pred ccCCCcccCCCCccccc-ccccc-ccccCcccCcccccee
Confidence 58899999999998865 34889 675 699999999865
No 58
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=73.75 E-value=2.1 Score=20.63 Aligned_cols=10 Identities=50% Similarity=1.404 Sum_probs=9.0
Q ss_pred eeeCCCCCCCC
Q psy15473 171 VVCSECPRGYG 181 (190)
Q Consensus 171 ~~C~~C~~G~~ 181 (190)
|+| .|++||.
T Consensus 2 y~C-~C~~Gy~ 11 (24)
T PF12662_consen 2 YTC-SCPPGYQ 11 (24)
T ss_pred EEe-eCCCCCc
Confidence 789 8999996
No 59
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=65.27 E-value=4.1 Score=28.28 Aligned_cols=20 Identities=35% Similarity=0.815 Sum_probs=11.2
Q ss_pred CCCCCCCCccCCCCcccCCCC
Q psy15473 9 DNTGGDNCERCARGYYGNALE 29 (190)
Q Consensus 9 ~g~~G~~C~~C~~g~~g~~c~ 29 (190)
+....+.| +|..||.|.+|+
T Consensus 62 ~dl~~~~C-rC~~GYtGeRCE 81 (139)
T PHA03099 62 RDIDGMYC-RCSHGYTGIRCQ 81 (139)
T ss_pred ccCCCcee-ECCCCccccccc
Confidence 33344555 666666666655
No 60
>KOG3516|consensus
Probab=63.64 E-value=6.1 Score=37.35 Aligned_cols=36 Identities=33% Similarity=0.776 Sum_probs=30.1
Q ss_pred CCCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCC
Q psy15473 150 TDCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSP 187 (190)
Q Consensus 150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~ 187 (190)
+-|.|.+|+++|.|+..- ..+.| .|. .||.|..|..
T Consensus 546 drClPN~CehgG~C~Qs~-~~f~C-~C~~TGY~GatCHt 582 (1306)
T KOG3516|consen 546 DRCLPNPCEHGGKCSQSW-DDFEC-NCELTGYKGATCHT 582 (1306)
T ss_pred cccCCccccCCCcccccc-cceeE-eccccccccccccC
Confidence 558899999999998853 45899 998 8999999863
No 61
>PF14670 FXa_inhibition: Coagulation Factor Xa inhibitory site; PDB: 3Q3K_B 1NFY_B 1LQD_A 1G2L_B 1IQF_L 2UWP_B 2VH6_B 3KQC_L 2P93_L 2BQW_A ....
Probab=61.02 E-value=4.7 Score=21.44 Aligned_cols=18 Identities=39% Similarity=0.951 Sum_probs=12.9
Q ss_pred CceecCCCCeeeCCCCCCCC
Q psy15473 162 PCVQLDDDQVVCSECPRGYG 181 (190)
Q Consensus 162 ~C~~~~~~~~~C~~C~~G~~ 181 (190)
.|++.. +.++| .|++||.
T Consensus 11 ~C~~~~-g~~~C-~C~~Gy~ 28 (36)
T PF14670_consen 11 ICVNTP-GSYRC-SCPPGYK 28 (36)
T ss_dssp EEEEET-TSEEE-E-STTEE
T ss_pred CCccCC-CceEe-ECCCCCE
Confidence 466664 66999 9999985
No 62
>PF03302 VSP: Giardia variant-specific surface protein; InterPro: IPR005127 During infection, the intestinal protozoan parasite Giardia lamblia virus undergoes continuous antigenic variation which is determined by diversification of the parasite's major surface antigen, named VSP (variant surface protein).
Probab=60.96 E-value=71 Score=26.83 Aligned_cols=10 Identities=40% Similarity=1.102 Sum_probs=6.0
Q ss_pred eeCCCCCCCC
Q psy15473 172 VCSECPRGYG 181 (190)
Q Consensus 172 ~C~~C~~G~~ 181 (190)
+|..+.+||.
T Consensus 241 ~C~~~~~GY~ 250 (397)
T PF03302_consen 241 TCTACAPGYF 250 (397)
T ss_pred cccccccccc
Confidence 5655666664
No 63
>PF12946 EGF_MSP1_1: MSP1 EGF domain 1; InterPro: IPR024730 This EGF-like domain is found at the C terminus of the malaria parasite MSP1 protein. MSP1 is the merozoite surface protein 1. This domain is part of the C-terminal fragment that is proteolytically processed from the the rest of the protein and is left attached to the surface of the invading parasite [].; PDB: 1N1I_C 2FLG_A 1CEJ_A 2NPR_A 1B9W_A 1OB1_F.
Probab=56.18 E-value=5 Score=21.54 Aligned_cols=29 Identities=34% Similarity=0.905 Sum_probs=19.2
Q ss_pred CcCCCCCCCCCceecCCCCeeeCCCCCCCC
Q psy15473 152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYG 181 (190)
Q Consensus 152 C~~~~C~~~g~C~~~~~~~~~C~~C~~G~~ 181 (190)
|..-.|..++.|....++...| .|..||.
T Consensus 2 C~~~~cP~NA~C~~~~dG~eec-rCllgyk 30 (37)
T PF12946_consen 2 CIDTKCPANAGCFRYDDGSEEC-RCLLGYK 30 (37)
T ss_dssp -SSS---TTEEEEEETTSEEEE-EE-TTEE
T ss_pred ccCccCCCCcccEEcCCCCEEE-EeeCCcc
Confidence 3344577788898887788899 8999995
No 64
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=50.60 E-value=15 Score=20.59 Aligned_cols=24 Identities=33% Similarity=0.998 Sum_probs=15.5
Q ss_pred CCCccCCCCcccCCCCCCCCCCcCCC
Q psy15473 14 DNCERCARGYYGNALEGAVTDCKQCP 39 (190)
Q Consensus 14 ~~C~~C~~g~~g~~c~~~~~~C~~~~ 39 (190)
..|..|+.|+|-+.-. ...|.+||
T Consensus 9 ~~C~~Cp~GtYq~~~g--~~~C~~Cp 32 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEG--QTSCTPCP 32 (48)
T ss_pred CccCCCCCCccCCccC--CccCccCc
Confidence 4699999999965422 23566443
No 65
>KOG3514|consensus
Probab=43.84 E-value=21 Score=33.87 Aligned_cols=34 Identities=21% Similarity=0.416 Sum_probs=25.1
Q ss_pred CCcCCCCCCCCCceecCCcccccCCCceeEeec-CCCCCCCCC
Q psy15473 34 DCKQCPCPNQGPCVQLDDDQVSNLGNRTRIRIK-SALGGNRTR 75 (190)
Q Consensus 34 ~C~~~~C~~~g~C~~~~~~~~~~~~~~~~c~c~-~~~~g~~c~ 75 (190)
.|.++||.|+|.|....+. +-|.|. .+|.|..|+
T Consensus 625 ~C~~nPC~N~g~C~egwNr--------fiCDCs~T~~~G~~Ce 659 (1591)
T KOG3514|consen 625 ICESNPCQNGGKCSEGWNR--------FICDCSGTGFEGRTCE 659 (1591)
T ss_pred ccCCCcccCCCCccccccc--------cccccccCcccCcccc
Confidence 7999999999999887654 456663 356676654
No 66
>KOG3516|consensus
Probab=40.11 E-value=34 Score=32.69 Aligned_cols=36 Identities=36% Similarity=0.822 Sum_probs=28.8
Q ss_pred CCCcCCCCCCCCCceecCCCCeeeCCCC-CCCCCCCCCC
Q psy15473 150 TDCKQCPCPNQGPCVQLDDDQVVCSECP-RGYGGEKMSP 187 (190)
Q Consensus 150 ~~C~~~~C~~~g~C~~~~~~~~~C~~C~-~G~~G~~C~~ 187 (190)
..|.+-+|.|+|+|+..-.+ ++| .|. ..|.|+.|..
T Consensus 956 GhCss~~C~NGG~Cvery~g-ytC-DCs~Tay~Gp~Cs~ 992 (1306)
T KOG3516|consen 956 GHCSSYPCLNGGHCVERYDG-YTC-DCSRTAYDGPFCSK 992 (1306)
T ss_pred cccccccccCCCEEEEecCc-eee-ccccCcCCCCcccc
Confidence 45778899999999987544 899 685 6799998864
No 67
>PF12955 DUF3844: Domain of unknown function (DUF3844); InterPro: IPR024382 This presumed domain is found in fungal species. It contains 8 largely conserved cysteine residues. This domain is found in proteins thought to be located in the endoplasmic reticulum.
Probab=40.06 E-value=20 Score=23.97 Aligned_cols=33 Identities=27% Similarity=0.690 Sum_probs=22.0
Q ss_pred CCCCCCCCCceecC----CCCeeeCCCCC-------------CCCCCCCCC
Q psy15473 154 QCPCPNQGPCVQLD----DDQVVCSECPR-------------GYGGEKMSP 187 (190)
Q Consensus 154 ~~~C~~~g~C~~~~----~~~~~C~~C~~-------------G~~G~~C~~ 187 (190)
...|..+|.|+... ..=+.| .|.+ .|.|..|++
T Consensus 12 Tn~CsgHG~C~~~~~~~~~~C~~C-~C~~T~~~~~~~~~ktt~W~G~aCqK 61 (103)
T PF12955_consen 12 TNNCSGHGSCVKKYGSGGGDCFAC-KCKPTVVKTGSGKGKTTHWGGPACQK 61 (103)
T ss_pred ccCCCCCceEeeccCCCccceEEE-EeeccccccccccCceeeeccccccc
Confidence 35688888887752 123788 7877 567777754
No 68
>PF01683 EB: EB module; InterPro: IPR006149 The EB domain has no known function. It is found in several Caenorhabditis sp. and Drosophila sp. proteins. The domain contains 8 conserved cysteines that probably form four disulphide bridges and is found associated with kunitz domains IPR002223 from INTERPRO
Probab=38.61 E-value=30 Score=19.52 Aligned_cols=19 Identities=42% Similarity=1.046 Sum_probs=13.1
Q ss_pred CCCCCCceecCCCCeeeCCCCCCCC
Q psy15473 157 CPNQGPCVQLDDDQVVCSECPRGYG 181 (190)
Q Consensus 157 C~~~g~C~~~~~~~~~C~~C~~G~~ 181 (190)
|..+..|++ ++| .|++||+
T Consensus 28 C~~~s~C~~-----g~C-~C~~g~~ 46 (52)
T PF01683_consen 28 CIGGSVCVN-----GRC-QCPPGYV 46 (52)
T ss_pred CCCcCEEcC-----CEe-ECCCCCE
Confidence 445667744 688 8998874
No 69
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=33.08 E-value=1.4e+02 Score=19.45 Aligned_cols=8 Identities=13% Similarity=0.044 Sum_probs=6.2
Q ss_pred CCCCcccC
Q psy15473 86 QLTGYHHE 93 (190)
Q Consensus 86 C~~G~~g~ 93 (190)
|++||+-.
T Consensus 79 C~~G~y~~ 86 (98)
T cd00185 79 CKPGFYCL 86 (98)
T ss_pred CCCCCEec
Confidence 88998853
No 70
>PF04863 EGF_alliinase: Alliinase EGF-like domain; InterPro: IPR006947 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species. Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A.
Probab=29.83 E-value=12 Score=21.91 Aligned_cols=31 Identities=35% Similarity=0.718 Sum_probs=16.4
Q ss_pred CCCCCCCceec---CCCCeeeCCCCCCCCCCCCCC
Q psy15473 156 PCPNQGPCVQL---DDDQVVCSECPRGYGGEKMSP 187 (190)
Q Consensus 156 ~C~~~g~C~~~---~~~~~~C~~C~~G~~G~~C~~ 187 (190)
+|..+|+-... .+|...| .|..-|.|+.|+.
T Consensus 18 ~CSGHGr~flDg~~~dG~p~C-ECn~Cy~GpdCS~ 51 (56)
T PF04863_consen 18 SCSGHGRAFLDGLIADGSPVC-ECNSCYGGPDCST 51 (56)
T ss_dssp --TTSEE--TTS-EETTEE---EE-TTEESTTS-E
T ss_pred CcCCCCeeeeccccccCCccc-cccCCcCCCCccc
Confidence 56667765421 3466889 8999999999974
No 71
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=29.00 E-value=30 Score=18.12 Aligned_cols=10 Identities=50% Similarity=1.072 Sum_probs=8.7
Q ss_pred eeeCCCCCCCC
Q psy15473 171 VVCSECPRGYG 181 (190)
Q Consensus 171 ~~C~~C~~G~~ 181 (190)
+.| .|+.||+
T Consensus 18 ~~C-~CPeGyI 27 (34)
T PF09064_consen 18 GQC-FCPEGYI 27 (34)
T ss_pred Cce-eCCCceE
Confidence 689 8999996
No 72
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=28.94 E-value=68 Score=24.23 Aligned_cols=21 Identities=24% Similarity=0.670 Sum_probs=16.1
Q ss_pred CCceecCCCCeeeCCCCCCCCCC
Q psy15473 161 GPCVQLDDDQVVCSECPRGYGGE 183 (190)
Q Consensus 161 g~C~~~~~~~~~C~~C~~G~~G~ 183 (190)
..|+... ++|.| .|++||+..
T Consensus 199 ~~C~~~~-g~~~c-~c~~g~~~~ 219 (224)
T cd01475 199 QVCISTP-GSYLC-ACTEGYALL 219 (224)
T ss_pred ceEEcCC-CCEEe-ECCCCccCC
Confidence 3577665 77999 999999753
No 73
>KOG3607|consensus
Probab=25.98 E-value=59 Score=29.64 Aligned_cols=28 Identities=29% Similarity=0.714 Sum_probs=20.3
Q ss_pred CCCcCCCCCccCCCCeeeCCCCCCCCCCcc
Q psy15473 106 CNCNGHADICDAESGRCICQDNTGGDNCER 135 (190)
Q Consensus 106 c~C~~~~~~C~~~~g~C~C~~g~~G~~C~~ 135 (190)
-.|++++ .|+. ...|+|.++|.++.|+.
T Consensus 630 ~~C~g~G-VCnn-~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 630 TTCNGHG-VCNN-ELNCHCEPGWAPPFCFI 657 (716)
T ss_pred cccCCCc-ccCC-CcceeeCCCCCCCcccc
Confidence 3455555 6754 56899999999998863
Done!