RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15473
(190 letters)
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 61.0 bits (148), Expect = 2e-12
Identities = 35/147 (23%), Positives = 49/147 (33%), Gaps = 19/147 (12%)
Query: 5 CICQDNTGGDNCERCARGYYGN--ALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTR 62
C T G CE C GY+G+ G V C+ C C + D NR
Sbjct: 21 THCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNI------DPNAVGNCNRLT 74
Query: 63 IRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH-----ADICDA 117
+ T G G+ P + +C C CN + C+
Sbjct: 75 GECLKCIYN--TAG----FYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNP 128
Query: 118 ESGRCICQDNTGGDNCERCARGYYGNA 144
+G+C C + G +C C GYY
Sbjct: 129 VTGQCQCLPHVSGRDCGTCDPGYYNLQ 155
Score = 52.9 bits (127), Expect = 2e-09
Identities = 31/89 (34%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 96 SGGAFSRCVPCNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAV 149
S G C PC CN + D C+ +G C+ C NT G C+RC G++GN L
Sbjct: 46 SNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNP 105
Query: 150 TD-CKQCPCPNQGPCVQLDDDQVVCSECP 177
D CK C C G Q V +C
Sbjct: 106 ADKCKACACNPYGTVQQQSSCNPVTGQCQ 134
Score = 45.2 bits (107), Expect = 2e-06
Identities = 21/88 (23%), Positives = 29/88 (32%), Gaps = 9/88 (10%)
Query: 106 CNCNGHADIC----DAESGRCICQDNTGGDNCERCARGYYGN--ALEGAVTDCKQCPCPN 159
C C G + E C T G CE C GY+G+ G V C+ C C +
Sbjct: 1 CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCND 60
Query: 160 QGPCVQLDDDQV---VCSECPRGYGGEK 184
+ + C +C G
Sbjct: 61 NIDPNAVGNCNRLTGECLKCIYNTAGFY 88
Score = 29.0 bits (65), Expect = 0.65
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 4 RCICQDNTGGDNCERCARGYYGNA 27
+C C + G +C C GYY
Sbjct: 132 QCQCLPHVSGRDCGTCDPGYYNLQ 155
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 61.2 bits (148), Expect = 1e-11
Identities = 38/187 (20%), Positives = 58/187 (31%), Gaps = 17/187 (9%)
Query: 5 CICQDNTGGDNCERCARGYYGNALEG--AVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTR 62
CQ NT G NCE+C Y+ + C+ C C G D ++
Sbjct: 346 DNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDFSVGLI 405
Query: 63 IRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADI-----CDA 117
+ G++ C C CN I CD+
Sbjct: 406 AGQCRCKLHVEGE------RCDVCKEGFYDLSAEDPY--GCKSCACNPLGTIPGGNPCDS 457
Query: 118 ESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECP 177
E+G C C+ G C++C ++G L + C+ C C G + C
Sbjct: 458 ETGYCYCKRLVTGQRCDQCLPQHWG--LSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCL 515
Query: 178 RGYGGEK 184
G +
Sbjct: 516 PHMIGRQ 522
Score = 59.3 bits (143), Expect = 6e-11
Identities = 40/194 (20%), Positives = 62/194 (31%), Gaps = 14/194 (7%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLGN 59
C+C+ NT G NCE C Y+ A CK+C C D GN
Sbjct: 280 HCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEHSSSCHFDMAVFLATGN 339
Query: 60 RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTS-------GGAFSRCVPCNCNGHA 112
+ + R + ++Q + A S
Sbjct: 340 VSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTD 399
Query: 113 DICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLD--DDQ 170
+G+C C+ + G+ C+ C G+Y + E CK C C G + D +
Sbjct: 400 FSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCACNPLGTIPGGNPCDSE 458
Query: 171 VVCSECPRGYGGEK 184
C R G++
Sbjct: 459 TGYCYCKRLVTGQR 472
Score = 42.4 bits (99), Expect = 4e-05
Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 15/90 (16%)
Query: 105 PCNCNGHADICDA-----------ESGRCICQDNTGGDNCERCARGYYGNALEGAVTD-- 151
C C GHA C G C+C+ NT G NCE C Y+ A
Sbjct: 253 NCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNS 312
Query: 152 --CKQCPCPNQGPCVQLDDDQVVCSECPRG 179
CK+C C D + + G
Sbjct: 313 NACKKCNCNEHSSSCHFDMAVFLATGNVSG 342
Score = 38.9 bits (90), Expect = 5e-04
Identities = 27/134 (20%), Positives = 45/134 (33%), Gaps = 20/134 (14%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRI 63
+C C+ + G+ C+ C G+Y + E CK C C G +
Sbjct: 408 QCRCKLHVEGERCDVCKEGFYDLSAEDPY-GCKSCACNPLGTIPGGNPCDSETG----YC 462
Query: 64 RIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHA---DICDAESG 120
K + G ++ L + C PC+C+ + C +SG
Sbjct: 463 YCKRLVTG---------QRCDQCLPQHWGLSNDL---DGCRPCDCDLGGALNNSCSEDSG 510
Query: 121 RCICQDNTGGDNCE 134
+C C + G C
Sbjct: 511 QCSCLPHMIGRQCN 524
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 55.7 bits (133), Expect = 9e-10
Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 11/69 (15%)
Query: 100 FSRCVPCNCNGHADICDAESGR--CICQDNTGGDNCERCARGYYG---------NALEGA 148
C CN HA++C G C C+ NT G +C +C + + G+
Sbjct: 264 IEVIGRCKCNLHANLCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGS 323
Query: 149 VTDCKQCPC 157
C
Sbjct: 324 PNACAAAGS 332
Score = 37.2 bits (85), Expect = 0.002
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 9/46 (19%)
Query: 4 RCICQDNTGGDNCERCARGYYG---------NALEGAVTDCKQCPC 40
+C C+ NT G +C +C + + G+ C
Sbjct: 287 QCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGS 332
Score = 26.8 bits (58), Expect = 5.6
Identities = 4/22 (18%), Positives = 8/22 (36%)
Query: 92 HEPTSGGAFSRCVPCNCNGHAD 113
+ P G+ + C + H
Sbjct: 316 YLPLPHGSPNACAAAGSHHHHH 337
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 53.6 bits (128), Expect = 5e-09
Identities = 24/99 (24%), Positives = 35/99 (35%), Gaps = 14/99 (14%)
Query: 100 FSRCVPCNCNGHADIC---DAESGRCICQDNTGGDNCERCARGYYGNALEGAVTD----C 152
F+ C CNGHA C + + C C+ NT G +CE+C + A + C
Sbjct: 249 FAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASEC 308
Query: 153 KQCPCPNQGP-------CVQLDDDQVVCSECPRGYGGEK 184
C C + + C+ C G K
Sbjct: 309 LPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAK 347
Score = 52.5 bits (125), Expect = 1e-08
Identities = 21/78 (26%), Positives = 30/78 (38%), Gaps = 13/78 (16%)
Query: 94 PTSGGAFSRCVPCNCNGHADIC---------DAESGRCI-CQDNTGGDNCERCARGYYGN 143
+ + S C+PC+CNG + C G C C+DNT G CERC ++
Sbjct: 299 RATAESASECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRL 358
Query: 144 ALEGAVTDCKQCPCPNQG 161
G C +
Sbjct: 359 ---GNTEACSPAAAHHHH 373
Score = 39.8 bits (92), Expect = 2e-04
Identities = 21/115 (18%), Positives = 35/115 (30%), Gaps = 20/115 (17%)
Query: 3 RRCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLG 58
C C+ NT G +CE+C + A + C C C + D + + G
Sbjct: 272 LMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDCNGRSQECYFDPELYRSTG 331
Query: 59 NRTRIRIKSALGGNRTRGLALT--RQTHYQLTGYHHEPTSGGAFSRCVPCNCNGH 111
+ GG+ T T + + + C P + H
Sbjct: 332 H----------GGHCTNCRDNTDGAKCERCRENFFRLGNTEA----CSPAAAHHH 372
Score = 39.8 bits (92), Expect = 3e-04
Identities = 11/40 (27%), Positives = 15/40 (37%), Gaps = 3/40 (7%)
Query: 5 CICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG 44
C+DNT G CERC ++ G C +
Sbjct: 337 TNCRDNTDGAKCERCRENFFRL---GNTEACSPAAAHHHH 373
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 48.7 bits (115), Expect = 3e-07
Identities = 30/111 (27%), Positives = 41/111 (36%), Gaps = 26/111 (23%)
Query: 100 FSRCVPCNCNGHADICDAESG------RCICQDNTGGDNCERCARGYYGNALEGAVTD-- 151
S C C+GHAD+CDA+ +C CQ NT G +C+RC G+ + A TD
Sbjct: 260 ISIGGRCVCHGHADVCDAKDPLDPFRLQCACQHNTCGGSCDRCCPGFNQQPWKPATTDSA 319
Query: 152 --CKQCPCPNQ----------------GPCVQLDDDQVVCSECPRGYGGEK 184
C+ C C + VC +C G
Sbjct: 320 NECQSCNCHGHAYDCYYDPEVDRREASQNQDNVYQGGGVCLDCQHHTTGIN 370
Score = 47.9 bits (113), Expect = 5e-07
Identities = 31/163 (19%), Positives = 48/163 (29%), Gaps = 57/163 (34%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGAVTD----CKQCPCPNQGPCVQLDDDQVSNLGN 59
+C CQ NT G +C+RC G+ + A TD C+ C C D +
Sbjct: 287 QCACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPE------- 339
Query: 60 RTRIRIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAES 119
+ + D
Sbjct: 340 -------------------------------------------VDRREASQNQDNVYQGG 356
Query: 120 GRCI-CQDNTGGDNCERCARGYYGNALE--GAVTDCKQCPCPN 159
G C+ CQ +T G NCERC G++ + + C+ +
Sbjct: 357 GVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 43.7 bits (102), Expect = 1e-05
Identities = 18/86 (20%), Positives = 28/86 (32%), Gaps = 6/86 (6%)
Query: 100 FSRCVPCNCNGHADICDAESG--RCICQDNTGGDNCERCARGYYGNALEGA----VTDCK 153
C CN HA +C ++ C C+ NT G +C +C + Y G +
Sbjct: 291 IKVRGRCKCNLHATVCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGA 350
Query: 154 QCPCPNQGPCVQLDDDQVVCSECPRG 179
C + + C G
Sbjct: 351 ANACIPSISSIGTNVCDNELLHCQNG 376
Score = 37.5 bits (86), Expect = 0.002
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 12/46 (26%)
Query: 103 CVPCNCNGHADICDAES------------GRCICQDNTGGDNCERC 136
C+P + ++CD E RC+C G CE+
Sbjct: 354 CIPSISSIGTNVCDNELLHCQNGGTCHNNVRCLCPAAYTGILCEKL 399
Score = 36.0 bits (82), Expect = 0.006
Identities = 23/130 (17%), Positives = 34/130 (26%), Gaps = 18/130 (13%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVSNLGNRTRI 63
C C+ NT G +C +C + Y G P P +
Sbjct: 314 TCECEHNTTGPDCGKCKKNYQGRPWSPG----SYLPIPKGAANACIPSISSIGTNVCDNE 369
Query: 64 RIKSALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCI 123
+ GG + Y TG C C A C ++SG+
Sbjct: 370 LLHCQNGGTCHNNVRCLCPAAY--TGIL-----------CEKLRCE-EAGSCGSDSGQGA 415
Query: 124 CQDNTGGDNC 133
T +
Sbjct: 416 PPHGTHHHHH 425
>3qcw_A Neurexin-1-alpha; synaptic adhesion molecule, cell adhesion; HET:
NAG; 2.65A {Bos taurus} PDB: 3r05_A* 3poy_A*
Length = 1245
Score = 32.9 bits (74), Expect = 0.054
Identities = 22/152 (14%), Positives = 44/152 (28%), Gaps = 12/152 (7%)
Query: 47 VQLDDDQ-----VSNLGNRTRIRI---KSALGGNRTRGLALTRQTHYQLTGYHHEPTSGG 98
++D + T + I ++ +++ +T + + G E +
Sbjct: 77 TPVNDGAWHNVRIRRQFRNTTLFIDQVEAKWVEVKSKRRDMTVFSGLFVGGLPPELRAAA 136
Query: 99 AFSRCVPCNCNGHAD--ICDAE-SGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155
I D ++G + G + A + +
Sbjct: 137 LKLTLASVREREPFKGWIRDVRVQSSLALPVDSGEVKLDDEPPNSGGGSPCEAGEEGEGG 196
Query: 156 PCPNQGPCVQLDDDQVVCSECPRGYGGEKMSP 187
C N G C +DD VC G+ G+ S
Sbjct: 197 VCLNGGVCSVVDDQ-AVCDCSRTGFRGKDCSQ 227
Score = 28.3 bits (62), Expect = 1.7
Identities = 9/43 (20%), Positives = 16/43 (37%)
Query: 10 NTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDD 52
++G + G + A + + C N G C +DD
Sbjct: 168 DSGEVKLDDEPPNSGGGSPCEAGEEGEGGVCLNGGVCSVVDDQ 210
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 32.3 bits (73), Expect = 0.098
Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 3/72 (4%)
Query: 108 CNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQC---PCPNQGPCV 164
C DIC + S C + G +C C Y GN G + + C + PC
Sbjct: 47 CALVPDICFSTSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCK 106
Query: 165 QLDDDQVVCSEC 176
+ +EC
Sbjct: 107 DKTHNCHKHAEC 118
>1tpg_A T-plasminogen activator F1-G; plasminogen activation; NMR {Homo
sapiens} SCOP: g.3.11.1 g.27.1.1 PDB: 1tpm_A 1tpn_A
Length = 91
Score = 29.8 bits (67), Expect = 0.15
Identities = 13/49 (26%), Positives = 17/49 (34%), Gaps = 1/49 (2%)
Query: 135 RCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
C G V C + C N G C Q +CP G+ G+
Sbjct: 35 WCNSGRAQC-HSVPVKSCSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 82
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 30.4 bits (68), Expect = 0.30
Identities = 15/65 (23%), Positives = 18/65 (27%), Gaps = 7/65 (10%)
Query: 101 SRCVPCNCNGHADICDAESGRCICQDNTGGDNCE-RCARGYYGNALEGAVTDCKQCPCPN 159
RC C + C C G C C G+YG +C C N
Sbjct: 244 ERCSGQEGCKSYVFCLPDPYGCSCATGWKGLQCNEACHPGFYGP------DCKLRCSCNN 297
Query: 160 QGPCV 164
C
Sbjct: 298 GEMCD 302
Score = 27.0 bits (59), Expect = 4.5
Identities = 15/84 (17%), Positives = 22/84 (26%), Gaps = 12/84 (14%)
Query: 100 FSRCVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPN 159
P + + G + RC +G + C N
Sbjct: 156 LPHAQPQDAGVY---SARYIGGNLFTSAFTRLIVRRCEAQKWGPE-----CNHLCTACMN 207
Query: 160 QGPCVQLDDDQVVCSECPRGYGGE 183
G C +D C CP G+ G
Sbjct: 208 NGVC---HEDTGECI-CPPGFMGR 227
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 30.0 bits (67), Expect = 0.49
Identities = 14/121 (11%), Positives = 24/121 (19%), Gaps = 57/121 (47%)
Query: 73 RTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQ---DNTG 129
RG+ + G + + N A E+ + + + TG
Sbjct: 1787 FYRGMTMQVAVP--------RDELGRSNYGMIAINPGRVAASFSQEALQYVVERVGKRTG 1838
Query: 130 G------DNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
N NQ Q V + G+
Sbjct: 1839 WLVEIVNYNV------------------------ENQ---------QYVAA-------GD 1858
Query: 184 K 184
Sbjct: 1859 L 1859
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 30.1 bits (67), Expect = 0.54
Identities = 19/63 (30%), Positives = 22/63 (34%), Gaps = 4/63 (6%)
Query: 103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGA-VTDCKQCPCPNQG 161
C+G E G C C G NCE +G LEG+ D C G
Sbjct: 432 RDRSLCHGK---GFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLG 488
Query: 162 PCV 164
CV
Sbjct: 489 DCV 491
Score = 29.3 bits (65), Expect = 0.79
Identities = 13/62 (20%), Positives = 19/62 (30%), Gaps = 10/62 (16%)
Query: 103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP 162
C G G+C C G C+ C R G + ++ C +G
Sbjct: 524 GQVCGGPGR---GLCFCGKCRCHPGFEGSACQ-CERTTEG------CLNPRRVECSGRGR 573
Query: 163 CV 164
C
Sbjct: 574 CR 575
Score = 28.5 bits (63), Expect = 1.6
Identities = 34/197 (17%), Positives = 47/197 (23%), Gaps = 43/197 (21%)
Query: 5 CICQDNTGGDNCERCARGYYGNALEGAVTD--------------CKQCPCPNQGPCVQLD 50
C C G NCE +G LEG+ C QC C +L
Sbjct: 448 CRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHTSDVPGKLI 507
Query: 51 DDQVSNLGNRTRIRIKSALGGNRTRGLALTRQTHYQLTGYH----HEPTSGGAFSRCVPC 106
Q R + G RGL + G+ +
Sbjct: 508 YGQYCECDTINCERYNGQVCGGPGRGLCFCGKCRCH-PGFEGSACQCERTTEGCLNPRRV 566
Query: 107 NCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL 166
C+G C C C+ C PC C +
Sbjct: 567 ECSGRGR---CRCNVCECHSGYQLPLCQEC--------------PGCPSPCGKYISCAE- 608
Query: 167 DDDQVVCSECPRGYGGE 183
C + +G G+
Sbjct: 609 ------CLKFEKGPFGK 619
>2c4f_L Coagulation factor VII precursor; blood coagulation, serine
protease, EGF, EGF-like domain, GLA, receptor enzyme,
glycoprotein, hydrolase, protease; HET: CGU GLC FUC NAG
GIL; 1.72A {Homo sapiens} SCOP: g.3.11.1 g.3.11.1
g.32.1.1 PDB: 1w2k_L* 1w0y_L* 1z6j_L* 2b8o_L* 2aer_L*
2ec9_L* 2fir_L* 2a2q_L* 1fak_L* 1o5d_L* 1wqv_L* 1wss_L*
1wtg_L* 1wun_L* 1wv7_L* 1dan_L* 2aei_L* 2b7d_L* 2f9b_L*
2flb_L* ...
Length = 142
Score = 28.8 bits (65), Expect = 0.61
Identities = 15/63 (23%), Positives = 18/63 (28%), Gaps = 5/63 (7%)
Query: 124 CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQG---PCVQLDDDQVVCSECPRGY 180
C+D C C + G E D C N G C + C C GY
Sbjct: 61 CKDQLQSYICF-CLPAFEGRNCETHKDDQLICVNENGGCEQYCSDHTGTKRSCR-CHEGY 118
Query: 181 GGE 183
Sbjct: 119 SLL 121
>2vj3_A Neurogenic locus notch homolog protein 1; transcription,
metal-binding, transmembrane, developmental protein,
notch signaling pathway; 2.60A {Homo sapiens} SCOP:
g.3.11.1 g.3.11.1 g.3.11.1 PDB: 1toz_A 2rqz_A* 2rr0_A
2rr2_A*
Length = 135
Score = 27.9 bits (63), Expect = 0.98
Identities = 22/75 (29%), Positives = 29/75 (38%), Gaps = 7/75 (9%)
Query: 113 DICDAESGRC----ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDD 168
D C + C C + G C+ C +GY G E V +C PC N C+
Sbjct: 6 DECSLGANPCEHAGKCINTLGSFECQ-CLQGYTGPRCEIDVNECVSNPCQNDATCLDQIG 64
Query: 169 DQVVCSECPRGYGGE 183
+ C C GY G
Sbjct: 65 E-FQCI-CMPGYEGV 77
Score = 27.6 bits (62), Expect = 1.4
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 124 CQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
C D G C C GY G E +C PC + G C+ ++ C ECP G+ G
Sbjct: 59 CLDQIGEFQCI-CMPGYEGVHCEVNTDECASSPCLHNGRCLDKINE-FQC-ECPTGFTGH 115
Score = 25.3 bits (56), Expect = 8.3
Identities = 14/47 (29%), Positives = 20/47 (42%), Gaps = 1/47 (2%)
Query: 6 ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDD 52
C + G C+ C +GY G E V +C PC N C+ +
Sbjct: 20 KCINTLGSFECQ-CLQGYTGPRCEIDVNECVSNPCQNDATCLDQIGE 65
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 28.5 bits (63), Expect = 1.3
Identities = 14/62 (22%), Positives = 19/62 (30%), Gaps = 3/62 (4%)
Query: 103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGP 162
NG+ E G C C G CE Y + + Q C +G
Sbjct: 444 NSHRCNNGN---GTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGE 500
Query: 163 CV 164
C+
Sbjct: 501 CL 502
>3nt1_A Prostaglandin-endoperoxide synthase 2; prostaglandin H2 synthase,
cyclooxygenase-2, naproxen, oxido; HET: NAG BOG NPS HEM;
1.73A {Mus musculus} PDB: 3ln1_A* 3mqe_A* 3ln0_A*
3ntb_A* 3q7d_A* 1pxx_A* 3pgh_A* 1cx2_A* 4cox_A* 5cox_A*
6cox_A* 3qh0_A* 3qmo_A* 4e1g_A* 3olu_A* 3olt_A* 3hs5_A*
3hs6_A* 3hs7_A* 3krk_A* ...
Length = 587
Score = 28.2 bits (62), Expect = 2.0
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
C PC N+G C+ DQ C G+ GE
Sbjct: 4 CCSNPCQNRGECMSTGFDQYKCDCTRTGFYGE 35
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 27.0 bits (60), Expect = 2.4
Identities = 16/68 (23%), Positives = 21/68 (30%), Gaps = 5/68 (7%)
Query: 121 RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVVCS-----E 175
C C D NC + C PC N G C + + +
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK 83
Query: 176 CPRGYGGE 183
CPRG+ G
Sbjct: 84 CPRGFNGI 91
Score = 25.4 bits (56), Expect = 9.5
Identities = 11/50 (22%), Positives = 14/50 (28%)
Query: 4 RCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQ 53
C C D NC + C PC N G C + +
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYR 73
>1nfu_B Coagulation factor XA, light chain; hydrolase; HET: RRP; 2.05A
{Homo sapiens} SCOP: g.3.11.1 PDB: 2h9e_L*
Length = 195
Score = 27.4 bits (61), Expect = 2.6
Identities = 16/74 (21%), Positives = 22/74 (29%), Gaps = 5/74 (6%)
Query: 113 DICDAESGRC--ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQ 170
+C ++G C C + C CARGY A PC Q
Sbjct: 82 KLCSLDNGDCDQFCHEEQNSVVCS-CARGYTLADNGKACIPTGPYPCGKQTLER--RKRS 138
Query: 171 VVCSECPRGYGGEK 184
V + G +
Sbjct: 139 VAQATSSSGEAPDS 152
>1q4g_A Prostaglandin G/H synthase 1; cyclooxygenase, non-steroidal
anti-inflammatory drug, peroxi prostaglandin synthase,
EGF-like domain; HET: BOG NAG NDG BMA MAN BFL HEM; 2.00A
{Ovis aries} SCOP: a.93.1.2 g.3.11.1 PDB: 1diy_A*
2ayl_A* 3kk6_A* 3n8v_A* 3n8w_A* 3n8x_A* 3n8y_A* 3n8z_A*
2oyu_P* 2oye_P* 1eqg_A* 1cqe_A* 1eqh_A* 1igz_A* 1igx_A*
1fe2_A* 1pge_A* 1pgf_A* 1pgg_A* 3n8w_B* ...
Length = 553
Score = 27.7 bits (61), Expect = 2.8
Identities = 12/32 (37%), Positives = 15/32 (46%)
Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
C PC +QG CV+ D+ C GY G
Sbjct: 5 CCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP 36
>1x7a_L Coagulation factor IX, light chain; inhibition, blood
clotting,hydrolase; HET: 187; 2.90A {Sus scrofa} SCOP:
g.3.11.1 g.3.11.1 PDB: 1pfx_L*
Length = 146
Score = 26.9 bits (60), Expect = 2.9
Identities = 20/76 (26%), Positives = 28/76 (36%), Gaps = 7/76 (9%)
Query: 111 HADICDAESGRC----ICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQL 166
+ D E C +C+D+ C C G+ G E T + Q C
Sbjct: 45 YVDGDQCEPNPCLNGGLCKDDINSYECW-CQVGFEGKNCELDATCNIKNGRCKQF-CKTG 102
Query: 167 DDDQVVCSECPRGYGG 182
D +V+CS C GY
Sbjct: 103 ADSKVLCS-CTTGYRL 117
>3asi_A Neurexin-1-alpha; beta-sandwich, cell adhesion, synapse maturation,
neuroligin glycosylation, membrane; HET: NAG; 2.30A {Bos
taurus}
Length = 410
Score = 26.9 bits (59), Expect = 4.6
Identities = 13/38 (34%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 146 EGAVTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
EG T C++ C NQG C+Q D C + G
Sbjct: 182 EGPSTTCQEDSCSNQGVCLQQWDG-FSCDCSMTSFSGP 218
>1tzj_A ACC deaminase, 1-aminocyclopropane-1-carboxylate deaminase;
substrate, PLP, crystal, complex, hydrolase; HET: PLP;
1.99A {Pseudomonas SP} SCOP: c.79.1.1 PDB: 1rqx_A*
1tz2_A* 1tyz_A* 1tzk_A* 1tzm_A*
Length = 338
Score = 26.7 bits (59), Expect = 5.0
Identities = 14/52 (26%), Positives = 18/52 (34%), Gaps = 8/52 (15%)
Query: 57 LGNRTRIRIK-------SALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFS 101
LG + + K A GGN+TR L G + GG S
Sbjct: 28 LGGKVHLYAKREDCNSGLAFGGNKTRKLEYLIP-EALAQGCDTLVSIGGIQS 78
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 26.9 bits (58), Expect = 5.2
Identities = 19/129 (14%), Positives = 31/129 (24%), Gaps = 6/129 (4%)
Query: 9 DNTGGDNCERCARGYYGNALEGAVTDCKQCPCPNQGPCVQLDDDQVS--NLGNRTRIRIK 66
+ D+C Y + + C N + TRI +
Sbjct: 441 SCSVTDSCYAIELEYSVDLGLSWHPLVRDCLPTNVECSRYHLQRILVSDTFNKWTRITLP 500
Query: 67 SALGGNRTRGLALTRQTHYQLTGYHHEPTSGGAFSRCVPCNCNGHADICDAESGRCICQD 126
Q + C+ C+GH G C+C +
Sbjct: 501 LPSYTRSQATRFRWHQPAPFDKQQTWAIDNVYIGDGCLD-MCSGHGRC---VQGSCVCDE 556
Query: 127 NTGGDNCER 135
GG C+
Sbjct: 557 QWGGLYCDE 565
>3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB,
transcription factor, DNA-binding, DNA-directed RNA
polymerase; 4.30A {Saccharomyces cerevisiae}
Length = 197
Score = 26.2 bits (57), Expect = 7.1
Identities = 8/25 (32%), Positives = 11/25 (44%), Gaps = 3/25 (12%)
Query: 155 CP-CPNQGPCVQLDDDQ--VVCSEC 176
CP C P + + VVC+ C
Sbjct: 24 CPECKVYPPKIVERFSEGDVVCALC 48
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 25.4 bits (55), Expect = 7.2
Identities = 10/67 (14%), Positives = 15/67 (22%), Gaps = 11/67 (16%)
Query: 103 CVPCNCNGHADI----CDAESGRCICQDNTGGDNCERCARGYY----GNALEGAVTDCKQ 154
C C+ + RC C G C G+ G + +
Sbjct: 3 PFGPGCEEAGCPEGSACNIITDRCTCS---GVRCRVHCPHGFQRSRYGCEFCKCRLEPMK 59
Query: 155 CPCPNQG 161
C
Sbjct: 60 ATCDISE 66
Score = 25.4 bits (55), Expect = 7.3
Identities = 10/67 (14%), Positives = 20/67 (29%), Gaps = 11/67 (16%)
Query: 103 CVPCNCN----GHADICDAESGRCICQDNTGGDNCERCARGYYGNALEGAVTDCKQCPCP 158
+ C+ +C + +C C+ NC + G C+ C C
Sbjct: 57 PMKATCDISECPEGMMCSRLTNKCDCKI---DINCRKTCPNGLKRDKLG----CEYCECR 109
Query: 159 NQGPCVQ 165
+ +
Sbjct: 110 PKRKLIP 116
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.321 0.139 0.476
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,951,491
Number of extensions: 171944
Number of successful extensions: 1131
Number of sequences better than 10.0: 1
Number of HSP's gapped: 869
Number of HSP's successfully gapped: 375
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.0 bits)