RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15473
         (190 letters)



>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 40.7 bits (95), Expect = 3e-06
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 8/56 (14%)

Query: 106 CNCNGHADI-----CDAESGRCI-CQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155
           C CN + D      C+  +G C+ C  NT G  C+RC  G++GN L        +C
Sbjct: 1   CQCNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAP--NPADKC 54



 Score = 30.3 bits (68), Expect = 0.021
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 2/34 (5%)

Query: 5  CICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 38
            C  NT G  C+RC  G++GN L        +C
Sbjct: 23 LKCIYNTAGFYCDRCKEGFFGNPLAP--NPADKC 54


>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 38.3 bits (89), Expect = 2e-05
 Identities = 12/40 (30%), Positives = 17/40 (42%)

Query: 103 CVPCNCNGHADICDAESGRCICQDNTGGDNCERCARGYYG 142
           C P         C+  +G+C C  +  G +C  C  GYY 
Sbjct: 3   CNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYN 42



 Score = 28.3 bits (63), Expect = 0.089
 Identities = 8/22 (36%), Positives = 11/22 (50%)

Query: 4  RCICQDNTGGDNCERCARGYYG 25
          +C C  +  G +C  C  GYY 
Sbjct: 21 QCQCLPHVSGRDCGTCDPGYYN 42


>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 55

 Score = 33.7 bits (77), Expect = 0.001
 Identities = 15/54 (27%), Positives = 21/54 (38%), Gaps = 5/54 (9%)

Query: 106 CNCNGHADICDAESGR----CICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 155
           C C G +        +      C   T G  CE C  GY+G+ L G+    + C
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPL-GSNGPVRLC 53



 Score = 29.1 bits (65), Expect = 0.056
 Identities = 12/34 (35%), Positives = 16/34 (47%), Gaps = 1/34 (2%)

Query: 5  CICQDNTGGDNCERCARGYYGNALEGAVTDCKQC 38
            C   T G  CE C  GY+G+ L G+    + C
Sbjct: 21 THCPTGTAGKRCELCDDGYFGDPL-GSNGPVRLC 53



 Score = 26.0 bits (57), Expect = 0.60
 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 1/31 (3%)

Query: 155 CPCPNQGPCVQLDDD-QVVCSECPRGYGGEK 184
           CPCP    C  +    +VVC+ CP G  G++
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKR 31


>d1q4ga2 g.3.11.1 (A:32-73) Prostaglandin H2 synthase-1, EGF-like
           module {Sheep (Ovis aries) [TaxId: 9940]}
          Length = 42

 Score = 25.2 bits (55), Expect = 0.91
 Identities = 13/35 (37%), Positives = 16/35 (45%)

Query: 149 VTDCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
           V  C   PC +QG CV+   D+  C     GY G 
Sbjct: 2   VNPCCYYPCQHQGICVRFGLDRYQCDCTRTGYSGP 36


>d1nqlb_ g.3.11.1 (B:) Epidermal growth factor, EGF {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 48

 Score = 23.7 bits (51), Expect = 3.4
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 151 DCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
                 C + G C+ ++        C  GY GE
Sbjct: 6   LSHDGYCLHDGVCMYIEALDKYACNCVVGYIGE 38


>d3egfa_ g.3.11.1 (A:) Epidermal growth factor, EGF {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 53

 Score = 22.9 bits (49), Expect = 7.4
 Identities = 8/33 (24%), Positives = 12/33 (36%)

Query: 151 DCKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
                 C N G C+ ++        C  GY G+
Sbjct: 8   SSYDGYCLNGGVCMHIESLDSYTCNCVIGYSGD 40


>d1tpga1 g.3.11.1 (A:51-91) Plasminogen activator (tissue-type),
           t-PA {Human (Homo sapiens) [TaxId: 9606]}
          Length = 41

 Score = 22.5 bits (48), Expect = 9.2
 Identities = 10/32 (31%), Positives = 14/32 (43%)

Query: 152 CKQCPCPNQGPCVQLDDDQVVCSECPRGYGGE 183
           C +  C N G C Q         +CP G+ G+
Sbjct: 1   CSEPRCFNGGTCQQALYFSDFVCQCPEGFAGK 32


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.321    0.139    0.476 

Gapped
Lambda     K      H
   0.267   0.0607    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 746,986
Number of extensions: 36643
Number of successful extensions: 279
Number of sequences better than 10.0: 1
Number of HSP's gapped: 253
Number of HSP's successfully gapped: 133
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.3 bits)