BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15475
(204 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4AQS|A Chain A, Laminin Beta1 Ln-Le1-4 Structure
Length = 525
Score = 98.6 bits (244), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 73/178 (41%), Positives = 94/178 (52%), Gaps = 29/178 (16%)
Query: 32 GDCLKCIYNTGGPQCDTCLPGYFGDALALPKGD------CEPCQCYIPGTLETETFTPVC 85
G C C +NT G C+ C P YF P+ D CEPC C G+ +C
Sbjct: 343 GVCDNCQHNTMGRNCEQCKPFYFQH----PERDIRDPNLCEPCTCDPAGSENG----GIC 394
Query: 86 DQLT--------GQCSCKPHVVGTNCDQCEVGHYNIISGE--GCKSCDCDPVGSL--NRT 133
D T GQC CK HV G CD C+ G Y++ + + GCKSC C+P+G++
Sbjct: 395 DGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNP 454
Query: 134 CDPITGQCLCRPGVTGTRCELCQPNHYGFS--LDGCKPCMCDPIGSNSLQC-DPSGQC 188
CD TG C C+ VTG RC+ C P H+G S LDGC+PC CD G+ + C + SGQC
Sbjct: 455 CDSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQC 512
Score = 71.2 bits (173), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 48/128 (37%), Positives = 66/128 (51%), Gaps = 6/128 (4%)
Query: 26 SVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVC 85
SV G C +C + G +CD C G++ + P G C+ C C GT+ C
Sbjct: 401 SVGLIAGQC-RCKLHVEGERCDVCKEGFYDLSAEDPYG-CKSCACNPLGTIPGGN---PC 455
Query: 86 DQLTGQCSCKPHVVGTNCDQCEVGHYNIISG-EGCKSCDCDPVGSLNRTCDPITGQCLCR 144
D TG C CK V G CDQC H+ + + +GC+ CDCD G+LN +C +GQC C
Sbjct: 456 DSETGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCL 515
Query: 145 PGVTGTRC 152
P + G +C
Sbjct: 516 PHMIGRQC 523
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 55/195 (28%), Positives = 81/195 (41%), Gaps = 29/195 (14%)
Query: 18 GPPSDILKSVAGTTGDCLKCIYNTGGPQCDTCLPGY----FGDALALPKGDCEPCQCYIP 73
P + + V G C +NT G C+ C+ Y + A C+ C C
Sbjct: 264 APVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNEH 323
Query: 74 GT---LETETFTPVCDQLTGQC-SCKPHVVGTNCDQCEVGHY-----NIISGEGCKSCDC 124
+ + F + G C +C+ + +G NC+QC+ ++ +I C+ C C
Sbjct: 324 SSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTC 383
Query: 125 DPVGSLNR-TCD--------PITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPI 175
DP GS N CD I GQC C+ V G RC++C+ Y S + DP
Sbjct: 384 DPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAE-------DPY 436
Query: 176 GSNSLQCDPSGQCPG 190
G S C+P G PG
Sbjct: 437 GCKSCACNPLGTIPG 451
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 7/63 (11%)
Query: 43 GPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTN 102
G +CD CLP ++G L+ C PC C + G L C + +GQCSC PH++G
Sbjct: 470 GQRCDQCLPQHWG--LSNDLDGCRPCDCDLGGALNNS-----CSEDSGQCSCLPHMIGRQ 522
Query: 103 CDQ 105
C++
Sbjct: 523 CNE 525
Score = 30.8 bits (68), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 31/67 (46%), Gaps = 9/67 (13%)
Query: 121 SCDCDPVGSLNRTCD-PITGQCLCRPGVTGTRCELCQPNHY--------GFSLDGCKPCM 171
+ +C PV +N + + G C+CR G CELC ++ G + + CK C
Sbjct: 260 ASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCN 319
Query: 172 CDPIGSN 178
C+ S+
Sbjct: 320 CNEHSSS 326
>pdb|1KLO|A Chain A, Crystal Structure Of Three Consecutive Laminin-Type
Epidermal Growth Factor-Like (Le) Modules Of Laminin
Gamma1 Chain Harboring The Nidogen Binding Site
Length = 162
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQLT 89
TG+CLKCIYNT G CD C G+FG+ LA P C+ C C GT++ ++ C+ +T
Sbjct: 74 TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQS---SCNPVT 130
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCK 120
GQC C PHV G +C C+ G+YN+ SG+GC+
Sbjct: 131 GQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 70.9 bits (172), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 21/149 (14%)
Query: 34 CLKCIYNTGGPQCDTCLPGYFGDALAL--PKGDCEPCQCYIPGTLETETFTPV----CDQ 87
C C T G +C+ C GYFGD L P C PCQC + P C++
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC-------NDNIDPNAVGNCNR 72
Query: 88 LTGQC-SCKPHVVGTNCDQCEVGHY-NIIS---GEGCKSCDCDPVGSLNR--TCDPITGQ 140
LTG+C C + G CD+C+ G + N ++ + CK+C C+P G++ + +C+P+TGQ
Sbjct: 73 LTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQ 132
Query: 141 CLCRPGVTGTRCELCQPNHYGF-SLDGCK 168
C C P V+G C C P +Y S GC+
Sbjct: 133 CQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 34.7 bits (78), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 24/115 (20%)
Query: 94 CKPHVVGTNCDQCEVGHYNIISGEG-----CKSCDCD------PVGSLNRTCDPITGQCL 142
C G C+ C+ G++ G C+ C C+ VG+ NR +TG+CL
Sbjct: 23 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR----LTGECL 78
Query: 143 -CRPGVTGTRCELCQPNHYGFSL-----DGCKPCMCDPIGSNSLQ--CDP-SGQC 188
C G C+ C+ +G L D CK C C+P G+ Q C+P +GQC
Sbjct: 79 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQC 133
>pdb|1NPE|B Chain B, Crystal Structure Of Nidogen/laminin Complex
Length = 164
Score = 82.0 bits (201), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 44/91 (48%), Positives = 60/91 (65%), Gaps = 4/91 (4%)
Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQLT 89
TG+CLKCIYNT G CD C G+FG+ LA P C+ C C GT++ ++ C+ +T
Sbjct: 76 TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQS---SCNPVT 132
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCK 120
GQC C PHV G +C C+ G+YN+ SG+GC+
Sbjct: 133 GQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 163
Score = 70.5 bits (171), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 54/149 (36%), Positives = 78/149 (52%), Gaps = 21/149 (14%)
Query: 34 CLKCIYNTGGPQCDTCLPGYFGDALAL--PKGDCEPCQCYIPGTLETETFTPV----CDQ 87
C C T G +C+ C GYFGD L P C PCQC + P C++
Sbjct: 22 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQC-------NDNIDPNAVGNCNR 74
Query: 88 LTGQC-SCKPHVVGTNCDQCEVGHY-NIIS---GEGCKSCDCDPVGSLNR--TCDPITGQ 140
LTG+C C + G CD+C+ G + N ++ + CK+C C+P G++ + +C+P+TGQ
Sbjct: 75 LTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQ 134
Query: 141 CLCRPGVTGTRCELCQPNHYGF-SLDGCK 168
C C P V+G C C P +Y S GC+
Sbjct: 135 CQCLPHVSGRDCGTCDPGYYNLQSGQGCE 163
Score = 34.7 bits (78), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 52/115 (45%), Gaps = 24/115 (20%)
Query: 94 CKPHVVGTNCDQCEVGHYNIISGEG-----CKSCDCD------PVGSLNRTCDPITGQCL 142
C G C+ C+ G++ G C+ C C+ VG+ NR +TG+CL
Sbjct: 25 CPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNR----LTGECL 80
Query: 143 -CRPGVTGTRCELCQPNHYGFSL-----DGCKPCMCDPIGSNSLQ--CDP-SGQC 188
C G C+ C+ +G L D CK C C+P G+ Q C+P +GQC
Sbjct: 81 KCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQC 135
>pdb|1TLE|A Chain A, Le (Laminin-Type Egf-Like) Module Giii4 In Solution At
Ph 3.5 And 290 K, Nmr, 14 Structures
Length = 58
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 19/29 (65%), Positives = 22/29 (75%)
Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALA 59
TG+CLKCIYNT G CD C G+FG+ LA
Sbjct: 21 TGECLKCIYNTAGFYCDRCKEGFFGNPLA 49
>pdb|4AQT|A Chain A, Laminin Gamma1 Ln-Le1-2 Structure
Length = 375
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 41/93 (44%), Gaps = 12/93 (12%)
Query: 36 KCIYNTGGPQCDTCLPGYFGD-----ALALPKGDCEPCQCYIPGTLETETFTPVCDQLTG 90
C +NT G C+ CLP +F D A A +C PC C G + F P + TG
Sbjct: 275 NCKHNTYGVDCEKCLP-FFNDRPWRRATAESASECLPCDC--NGRSQECYFDPELYRSTG 331
Query: 91 Q----CSCKPHVVGTNCDQCEVGHYNIISGEGC 119
+C+ + G C++C + + + E C
Sbjct: 332 HGGHCTNCRDNTDGAKCERCRENFFRLGNTEAC 364
>pdb|2GY5|A Chain A, Tie2 Ligand-Binding Domain Crystal Structure
pdb|2GY7|B Chain B, Angiopoietin-2TIE2 COMPLEX CRYSTAL STRUCTURE
Length = 423
Score = 33.9 bits (76), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 43/119 (36%), Positives = 55/119 (46%), Gaps = 22/119 (18%)
Query: 84 VCDQLTGQCSCKPHVVGTNCDQ-CEVGHYNII-----SG-EGCKS---CDCDPVGSLNRT 133
VC + TG+C C P +G C++ CE+ + SG EGCKS C DP G
Sbjct: 210 VCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG----- 264
Query: 134 CDPITG----QC--LCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSG 186
C TG QC C PG G C+L + G D + C+C P G LQC+ G
Sbjct: 265 CSCATGWKGLQCNEACHPGFYGPDCKLRCSCNNGEMCDRFQGCLCSP-GWQGLQCEREG 322
Score = 26.9 bits (58), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 11/57 (19%)
Query: 131 NRTCDPITGQCLCRPGVTGTRCE-LCQPNHYGFS-------LDGCKP---CMCDPIG 176
N C TG+C+C PG G CE C+ + +G + +GCK C+ DP G
Sbjct: 208 NGVCHEDTGECICPPGFMGRTCEKACELHTFGRTCKERCSGQEGCKSYVFCLPDPYG 264
>pdb|2Y38|A Chain A, Laminin Alpha5 Chain N-Terminal Fragment
Length = 403
Score = 29.3 bits (64), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 12/23 (52%), Positives = 16/23 (69%)
Query: 32 GDCLKCIYNTGGPQCDTCLPGYF 54
G CL C ++T G C+ CLPG+F
Sbjct: 357 GVCLDCQHHTTGINCERCLPGFF 379
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.142 0.494
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,163,730
Number of Sequences: 62578
Number of extensions: 313653
Number of successful extensions: 754
Number of sequences better than 100.0: 52
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 639
Number of HSP's gapped (non-prelim): 90
length of query: 204
length of database: 14,973,337
effective HSP length: 94
effective length of query: 110
effective length of database: 9,091,005
effective search space: 1000010550
effective search space used: 1000010550
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 49 (23.5 bits)