Query psy15475
Match_columns 204
No_of_seqs 152 out of 1700
Neff 8.8
Searched_HMMs 46136
Date Fri Aug 16 22:01:51 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15475.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15475hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0994|consensus 99.9 6.9E-25 1.5E-29 198.3 8.0 170 22-200 976-1146(1758)
2 KOG0994|consensus 99.9 2.4E-23 5.3E-28 188.4 12.6 173 30-202 362-546 (1758)
3 KOG3512|consensus 99.8 8.6E-20 1.9E-24 153.4 10.4 187 6-198 265-476 (592)
4 KOG1836|consensus 99.8 1.1E-19 2.5E-24 174.6 12.6 174 25-201 847-1022(1705)
5 KOG1836|consensus 99.7 1E-17 2.3E-22 161.2 12.6 176 24-200 737-973 (1705)
6 KOG3512|consensus 99.1 2.1E-10 4.6E-15 97.3 7.0 126 67-200 277-428 (592)
7 KOG4289|consensus 99.1 2.7E-10 5.9E-15 106.7 8.2 110 64-199 1718-1836(2531)
8 KOG4289|consensus 99.0 1.7E-09 3.7E-14 101.6 8.5 124 16-167 1719-1851(2531)
9 KOG1225|consensus 98.8 4.1E-08 8.8E-13 86.2 9.3 46 130-198 320-365 (525)
10 smart00180 EGF_Lam Laminin-typ 98.7 2E-08 4.3E-13 59.9 4.8 40 122-161 1-40 (46)
11 cd00055 EGF_Lam Laminin-type e 98.6 5.9E-08 1.3E-12 59.0 4.9 43 122-164 2-44 (50)
12 PF00053 Laminin_EGF: Laminin 98.5 3.2E-08 7E-13 59.9 1.2 43 122-164 1-43 (49)
13 KOG1219|consensus 98.5 2.6E-07 5.7E-12 90.4 6.6 109 15-154 3866-3978(4289)
14 KOG1219|consensus 98.4 4.6E-07 1E-11 88.8 7.1 107 63-202 3865-3979(4289)
15 KOG1225|consensus 98.3 1.3E-06 2.9E-11 76.8 7.5 87 106-202 238-343 (525)
16 smart00180 EGF_Lam Laminin-typ 98.1 7.4E-06 1.6E-10 48.7 4.5 28 85-112 13-40 (46)
17 cd00055 EGF_Lam Laminin-type e 98.1 6.8E-06 1.5E-10 49.8 4.1 29 85-113 14-42 (50)
18 KOG1226|consensus 98.1 4.8E-05 1E-09 68.9 11.0 115 8-153 448-580 (783)
19 PF00053 Laminin_EGF: Laminin 98.0 5.2E-06 1.1E-10 50.1 2.2 30 85-114 13-42 (49)
20 smart00051 DSL delta serrate l 97.5 0.00014 3E-09 46.2 3.6 43 155-199 21-63 (63)
21 KOG4260|consensus 97.4 0.00017 3.8E-09 58.0 4.2 59 37-112 132-190 (350)
22 KOG1226|consensus 97.2 0.0022 4.7E-08 58.5 8.7 119 15-157 479-624 (783)
23 KOG3509|consensus 97.0 0.0027 5.9E-08 59.8 8.0 127 28-165 714-853 (964)
24 KOG4260|consensus 96.8 0.0015 3.3E-08 52.7 4.3 90 94-197 132-229 (350)
25 smart00051 DSL delta serrate l 96.7 0.0024 5.1E-08 40.5 3.5 22 130-152 42-63 (63)
26 KOG1217|consensus 96.7 0.055 1.2E-06 46.9 13.2 89 91-202 253-355 (487)
27 PF12661 hEGF: Human growth fa 96.4 0.0017 3.6E-08 28.0 1.0 13 140-152 1-13 (13)
28 KOG1388|consensus 96.4 0.0033 7.2E-08 49.1 3.3 63 91-156 65-129 (217)
29 PF07974 EGF_2: EGF-like domai 95.9 0.01 2.2E-07 32.2 2.7 23 130-152 10-32 (32)
30 PF07974 EGF_2: EGF-like domai 95.6 0.014 3E-07 31.7 2.4 26 69-103 7-32 (32)
31 KOG1218|consensus 95.2 0.31 6.7E-06 40.3 10.6 51 140-200 125-176 (316)
32 KOG1388|consensus 94.9 0.012 2.7E-07 45.9 1.2 73 23-107 56-129 (217)
33 PF00008 EGF: EGF-like domain 94.6 0.014 3E-07 31.7 0.7 29 65-102 1-32 (32)
34 KOG1218|consensus 94.6 0.65 1.4E-05 38.4 11.1 52 85-149 157-209 (316)
35 KOG1217|consensus 94.3 0.38 8.3E-06 41.6 9.4 89 44-153 252-353 (487)
36 smart00179 EGF_CA Calcium-bind 93.7 0.11 2.5E-06 28.7 3.3 32 64-104 4-39 (39)
37 KOG1214|consensus 92.9 0.45 9.7E-06 44.5 7.4 48 139-197 809-859 (1289)
38 KOG3509|consensus 92.6 1.1 2.3E-05 43.0 9.6 95 17-114 753-851 (964)
39 KOG1214|consensus 92.4 0.91 2E-05 42.6 8.7 71 20-102 785-860 (1289)
40 PF01414 DSL: Delta serrate li 92.2 0.013 2.7E-07 37.2 -2.3 21 179-199 43-63 (63)
41 cd00054 EGF_CA Calcium-binding 92.0 0.27 5.9E-06 26.7 3.3 20 85-104 17-38 (38)
42 PF01414 DSL: Delta serrate li 90.7 0.048 1E-06 34.6 -0.8 21 131-152 43-63 (63)
43 smart00179 EGF_CA Calcium-bind 89.7 0.42 9E-06 26.3 2.7 32 14-46 3-38 (39)
44 cd00053 EGF Epidermal growth f 85.7 1.3 2.8E-05 23.3 3.0 19 85-103 14-35 (36)
45 smart00181 EGF Epidermal growt 84.1 1.6 3.5E-05 23.3 2.9 19 85-103 13-34 (35)
46 KOG0196|consensus 83.8 1.8 3.9E-05 40.6 4.6 55 89-148 258-317 (996)
47 KOG0196|consensus 82.8 1.9 4E-05 40.6 4.3 54 138-195 258-317 (996)
48 PHA02887 EGF-like protein; Pro 60.2 5.5 0.00012 28.3 1.4 16 139-154 108-123 (126)
49 PF12947 EGF_3: EGF domain; I 51.1 6.2 0.00014 21.8 0.4 17 85-101 14-32 (36)
50 cd00185 TNFR Tumor necrosis fa 49.6 73 0.0016 21.6 5.7 26 43-69 32-57 (98)
51 PF07645 EGF_CA: Calcium-bindi 48.7 9.7 0.00021 21.5 1.0 15 85-99 18-34 (42)
52 PHA03099 epidermal growth fact 44.4 13 0.00029 26.9 1.3 17 138-154 66-82 (139)
53 PHA02714 CD-30-like protein; P 42.9 27 0.00059 24.0 2.5 16 179-194 50-67 (110)
54 PF12662 cEGF: Complement Clr- 40.4 17 0.00037 18.2 1.0 10 139-148 2-11 (24)
55 PF07699 GCC2_GCC3: GCC2 and G 38.7 28 0.0006 20.2 1.9 11 151-161 10-20 (48)
56 PF09064 Tme5_EGF_like: Thromb 34.5 39 0.00084 18.5 1.8 16 133-148 11-27 (34)
57 PTZ00214 high cysteine membran 33.9 3.4E+02 0.0074 26.1 9.1 51 101-153 646-700 (800)
58 KOG3607|consensus 24.8 64 0.0014 30.5 2.7 29 67-105 629-657 (716)
No 1
>KOG0994|consensus
Probab=99.91 E-value=6.9e-25 Score=198.28 Aligned_cols=170 Identities=42% Similarity=0.983 Sum_probs=153.2
Q ss_pred CCCCCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCCCcccCCCceeecCCCCccC
Q psy15475 22 DILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGT 101 (204)
Q Consensus 22 ~~~~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~ 101 (204)
+..+.|+..+|.|++|.++|+|++|+.|++||||++-. ..|..|.|+..|+..... |+..+|+|.|.++..|.
T Consensus 976 ~d~~aCD~~TG~CLkCL~hTeG~hCe~Ck~Gf~GdA~~---q~CqrC~Cn~LGTn~~~~----CDr~tGQCpClpNv~G~ 1048 (1758)
T KOG0994|consen 976 YDPGACDVATGACLKCLYHTEGDHCEHCKDGFYGDALR---QNCQRCVCNFLGTNSTCH----CDRFTGQCPCLPNVQGV 1048 (1758)
T ss_pred cCCCccchhhchhhhhhhcccccchhhccccchhHHHH---hhhhhheccccccCCccc----cccccCcCCCCcccccc
Confidence 34456778899999999999999999999999998765 358888998888865533 88899999999999999
Q ss_pred CCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCC
Q psy15475 102 NCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQ 181 (204)
Q Consensus 102 ~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~ 181 (204)
+|++|++.+|...++..|.+|.|++.+. .+|+.++|+|+|+|||.|+.|+.|..-|||.+...|.+|+|++.|+...+
T Consensus 1049 ~CDqCA~N~w~laSG~GCe~C~Cd~~~~--pqCN~ftGQCqCkpGfGGR~C~qCqel~WGdP~~~C~aCdCd~rG~~tpQ 1126 (1758)
T KOG0994|consen 1049 RCDQCAENHWNLASGEGCEPCNCDPIGG--PQCNEFTGQCQCKPGFGGRTCSQCQELYWGDPNEKCRACDCDPRGIETPQ 1126 (1758)
T ss_pred cccccccchhccccCCCCCccCCCccCC--ccccccccceeccCCCCCcchhHHHHhhcCCCCCCceecCCCCCCCCCCC
Confidence 9999999999988899999999999654 48999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCcccCCCCCCcccCC
Q psy15475 182 CD-PSGQCPGVFMNRAEMSS 200 (204)
Q Consensus 182 C~-~~g~C~c~~~~~g~~~~ 200 (204)
|+ .+|+|.|.+|-.|..|-
T Consensus 1127 Cdr~tG~C~C~~Gv~G~rCd 1146 (1758)
T KOG0994|consen 1127 CDRATGRCVCRPGVGGPRCD 1146 (1758)
T ss_pred ccccCCceeecCCCCCcchh
Confidence 99 89999999998887664
No 2
>KOG0994|consensus
Probab=99.90 E-value=2.4e-23 Score=188.37 Aligned_cols=173 Identities=39% Similarity=0.904 Sum_probs=147.0
Q ss_pred CCCccccCCCCcCCCCCCCCCCCCCCCCCC--CCCCCCcCCCCCCCCccCCCCCCCcccCCC----ceeecCCCCccCCC
Q psy15475 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALA--LPKGDCEPCQCYIPGTLETETFTPVCDQLT----GQCSCKPHVVGTNC 103 (204)
Q Consensus 30 ~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~--~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~----g~C~C~~g~~G~~C 103 (204)
..|+|..|.|+|.|.+|++|+|.||.++-. ..-..|++|.|...|+.....-...++..+ |.|.|+++..|.+|
T Consensus 362 SGGVCDdCqHNT~G~~CE~CkP~fYRdprr~i~~p~vC~pC~CdP~GS~~~g~cds~~Dp~~GlvaGqC~CK~~V~G~RC 441 (1758)
T KOG0994|consen 362 SGGVCDDCQHNTEGQNCERCKPFFYRDPRRDISDPDVCKPCECDPAGSQDGGICDSFCDPSTGLVAGQCRCKEHVAGRRC 441 (1758)
T ss_pred ccccCccccccccccchhhcCcccccCCCCCCCCccccccccCCCCcCcCCCccccccCccccccccccccccCcCcccc
Confidence 456788999999999999999999998765 223469999999888754422001245545 79999999999999
Q ss_pred cccCCCccccC--CCCCCccCCCCCCCCCCC-cccCCCCeeecCCCCccCCCCCCCCCcccCCC--CCCccccCCCCCCC
Q psy15475 104 DQCEVGHYNII--SGEGCKSCDCDPVGSLNR-TCDPITGQCLCRPGVTGTRCELCQPNHYGFSL--DGCKPCMCDPIGSN 178 (204)
Q Consensus 104 ~~C~~G~~g~~--~~~~C~~c~C~~~g~~~~-~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~--~~c~~C~C~~~g~~ 178 (204)
++|++|||+.. ....|.+|.|+++|+..+ .|++.+|.|.|+.-++|..|++|+|.+||+.. ++|.+|+|+..|+.
T Consensus 442 d~Ck~Gywgl~~~dp~GC~~C~CN~lGT~~~s~CD~~TG~C~ckrlvTg~~cdqclPeh~gLs~~~~gc~~cdcd~GGs~ 521 (1758)
T KOG0994|consen 442 DRCKDGYWGLTSADPYGCRPCDCNPLGTRNGSGCDPETGDCYCKRLVTGIDCDQCLPEHWGLSNDLEGCRPCDCDQGGSY 521 (1758)
T ss_pred chhccCcccCccCCCCCccccccccccccCCCCCCCCCCceEeeccccCCCccccCccccccCCCCCCCcccccCCCCCC
Confidence 99999999865 456899999999998554 49999999999999999999999999999764 68999999999999
Q ss_pred CCCCC-CCCcccCCCCCCcccCCcc
Q psy15475 179 SLQCD-PSGQCPGVFMNRAEMSSDD 202 (204)
Q Consensus 179 ~~~C~-~~g~C~c~~~~~g~~~~~~ 202 (204)
..+|+ .+|+|.|+..+.|+.|+..
T Consensus 522 d~sc~~~sGqC~CRe~~~GR~c~~~ 546 (1758)
T KOG0994|consen 522 DNSCDLHSGQCECREHMLGRRCEQV 546 (1758)
T ss_pred CcccccccCcccccccccccccccc
Confidence 99999 8999999999999888753
No 3
>KOG3512|consensus
Probab=99.81 E-value=8.6e-20 Score=153.37 Aligned_cols=187 Identities=28% Similarity=0.611 Sum_probs=136.0
Q ss_pred eeeeeeeccc---ccCCCCCCCCCccCC-C--CccccCCCCcCCCCCCCCCCCCCCCCCC----CCCCCCcCCCCCCCCc
Q psy15475 6 HHVSVMDILL---CVGPPSDILKSVAGT-T--GDCLKCIYNTGGPQCDTCLPGYFGDALA----LPKGDCEPCQCYIPGT 75 (204)
Q Consensus 6 ~~~~~~~~~~---c~~~~~~~~~~C~~~-~--g~C~~C~~~~~G~~C~~C~~g~~g~~c~----~~~~~C~~c~C~~~g~ 75 (204)
|-++++|+.. |.|+ .+...|... + -.|. |.|||+|+.|++|++-|++++|. .+++.|.++.|+.++.
T Consensus 265 YfYAisdl~VgGRCKCN--gHAs~Cv~d~~~~ltCd-C~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~har 341 (592)
T KOG3512|consen 265 YFYAISDLAVGGRCKCN--GHASRCVMDESSHLTCD-CEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHAR 341 (592)
T ss_pred hheecccceeeeeeeec--CccceeeeccCCceEEe-cccCCCCCCcccccccccCCCccccccCCCccccccccchhhh
Confidence 4455555533 5553 344455432 2 3585 99999999999999999998886 6678899999998887
Q ss_pred cCCCCCCCcccCC-----Ccee-ecCCCCccCCCcccCCCcccc-----CCCCCCccCCCCCCCCCCCcccCCCCeeecC
Q psy15475 76 LETETFTPVCDQL-----TGQC-SCKPHVVGTNCDQCEVGHYNI-----ISGEGCKSCDCDPVGSLNRTCDPITGQCLCR 144 (204)
Q Consensus 76 ~~~~~~~~~C~~~-----~g~C-~C~~g~~G~~C~~C~~G~~g~-----~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~ 144 (204)
+..+.-. +..+ .+.| .|+++++|++|..|++|||.. ...+.|..|.|+|.|+.+.+|++.+|+|.|+
T Consensus 342 rcrfn~E--ly~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCk 419 (592)
T KOG3512|consen 342 RCRFNME--LYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCK 419 (592)
T ss_pred hcccchh--hhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCC
Confidence 5444321 2222 3567 499999999999999999963 2346799999999999999999999999999
Q ss_pred CCCccCCCCCCCCCcccCCC--CCCccccCCC--CCCCCCCCCCCCcccCCCCCCccc
Q psy15475 145 PGVTGTRCELCQPNHYGFSL--DGCKPCMCDP--IGSNSLQCDPSGQCPGVFMNRAEM 198 (204)
Q Consensus 145 ~g~~G~~C~~C~~g~~g~~~--~~c~~C~C~~--~g~~~~~C~~~g~C~c~~~~~g~~ 198 (204)
+|++|..|++|.+||+.... ..|.+++-++ .++.+.. ...-.+.|++++.|..
T Consensus 420 eGvtG~tCnrCa~gyqqsrs~vapcik~p~~~~~~~~s~ve-~qd~~s~Ck~~~~~~r 476 (592)
T KOG3512|consen 420 EGVTGLTCNRCAPGYQQSRSPVAPCIKIPTDAPTLGSSGVE-PQDQCSKCKASPGGKR 476 (592)
T ss_pred CCCcccccccccchhhcccCCCcCceecCCCCccccCCCCc-chhccccCCCCCccee
Confidence 99999999999999987542 3344444433 2222223 2455667888887654
No 4
>KOG1836|consensus
Probab=99.81 E-value=1.1e-19 Score=174.57 Aligned_cols=174 Identities=48% Similarity=1.047 Sum_probs=158.9
Q ss_pred CCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCC-CCCCCCcCCCCCCCCccCCCCCCCcccCCCceeecCCCCccCCC
Q psy15475 25 KSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNC 103 (204)
Q Consensus 25 ~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~-~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~~C 103 (204)
+.|+..++.|+.|.+++.|..|+.|+++|||+.-. .+.+.|.++.|...++.... .+|++.+|.|.|.++..|..|
T Consensus 847 g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p~gs~~~~---~~c~~~tGQcec~~~v~g~~c 923 (1705)
T KOG1836|consen 847 GNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVPAGSELPS---LTCNPVTGQCECKPNVEGRDC 923 (1705)
T ss_pred ccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCccCCccccc---ccCCCcccceeccCCCCcccc
Confidence 67888899998899999999999999999999876 66677999999888775421 129999999999999999999
Q ss_pred cccCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCC
Q psy15475 104 DQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCD 183 (204)
Q Consensus 104 ~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~ 183 (204)
..|.+|||+...+..|.+|.|++.++....|+..+|+|.|+++++|++|++|.+++|++...+|.+|.|+..|+.+.+|+
T Consensus 924 ~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~~tGqc~c~~gVtgqrc~qc~~~~~~~~~~gc~~c~c~~~Gs~~~qc~ 1003 (1705)
T KOG1836|consen 924 LYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDVGTGQCYCRPGVTGQRCDQCETYHFGFQTEGCGLCECDPLGSRGFQCD 1003 (1705)
T ss_pred ccccccccccCCCCCcccccccccccccccccccCCceeeecCccccccCccccCcccccccCCcceecccCCcccceec
Confidence 99999999998888999999999998888999999999999999999999999999999999999999999999999999
Q ss_pred -CCCcccCCCCCCcccCCc
Q psy15475 184 -PSGQCPGVFMNRAEMSSD 201 (204)
Q Consensus 184 -~~g~C~c~~~~~g~~~~~ 201 (204)
.+|+|+|.+++.|+.|..
T Consensus 1004 ~~~G~c~c~~~~~g~~c~~ 1022 (1705)
T KOG1836|consen 1004 PEDGQCPCRPGFEGRRCDQ 1022 (1705)
T ss_pred ccCCeeeecCCCCCccccc
Confidence 699999999999987643
No 5
>KOG1836|consensus
Probab=99.75 E-value=1e-17 Score=161.25 Aligned_cols=176 Identities=36% Similarity=0.793 Sum_probs=138.6
Q ss_pred CCCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCC-----------------------
Q psy15475 24 LKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETET----------------------- 80 (204)
Q Consensus 24 ~~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~----------------------- 80 (204)
..+|+..+|.|. |.+++.|..|++|..||||.+-....+.|++|+|.+.+......
T Consensus 737 ~~~Cd~~tG~C~-C~~~t~G~~C~~C~~GfYg~~~~~~~~dC~~C~Cp~~~~~~~~~~~~~~iCk~Cp~gytG~rCe~c~ 815 (1705)
T KOG1836|consen 737 SNICDPRTGQCK-CKHNTFGGQCAQCVDGFYGLPDLGTSGDCQPCPCPNGGACGQTPEILEVVCKNCPPGYTGLRCEECA 815 (1705)
T ss_pred cccccCCCCcee-cccCCCCCchhhhcCCCCCccccCCCCCCccCCCCCChhhcCcCcccceecCCCCCCCcccccccCC
Confidence 357999999997 99999999999999999998765433448998888775421100
Q ss_pred ----------C-------------------CCcccCCCcee-ecCCCCccCCCcccCCCccccCC----CCCCccCCCCC
Q psy15475 81 ----------F-------------------TPVCDQLTGQC-SCKPHVVGTNCDQCEVGHYNIIS----GEGCKSCDCDP 126 (204)
Q Consensus 81 ----------~-------------------~~~C~~~~g~C-~C~~g~~G~~C~~C~~G~~g~~~----~~~C~~c~C~~ 126 (204)
+ +..|+..+|.| .|..+++|.+|+.|.+||||... .+.|..|.|.+
T Consensus 816 dgyfg~p~~~~~~~~~c~~c~c~~n~dp~~~g~c~~~tg~c~~ci~nT~g~~cd~c~~g~~gd~l~~~p~~~c~~c~c~p 895 (1705)
T KOG1836|consen 816 DGYFGNPLGHDGDVRPCQSCQCNFNVDPNAFGNCNRLTGECLKCIHNTAGEYCDLCKEGYFGDPLAPNPEDKCFACGCVP 895 (1705)
T ss_pred CccccCCCCCCCCcccCccceeccccCccccccccccccceeeccCCcccccccccccCccccccCCCcCCccccccCcc
Confidence 0 01133334455 35555666666678899998433 36688899999
Q ss_pred CCCCC--CcccCCCCeeecCCCCccCCCCCCCCCcccCCC-CCCccccCCCCCCCCCCCC-CCCcccCCCCCCcccCC
Q psy15475 127 VGSLN--RTCDPITGQCLCRPGVTGTRCELCQPNHYGFSL-DGCKPCMCDPIGSNSLQCD-PSGQCPGVFMNRAEMSS 200 (204)
Q Consensus 127 ~g~~~--~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~-~~c~~C~C~~~g~~~~~C~-~~g~C~c~~~~~g~~~~ 200 (204)
.++.. .+|++.+|+|.|++++.|..|..|.+|||+.+. .+|.+|.|+..++++..|+ .+|||.|+++=+|+.|.
T Consensus 896 ~gs~~~~~~c~~~tGQcec~~~v~g~~c~~c~~g~fnl~s~~gC~~c~c~~~gs~~~~c~~~tGqc~c~~gVtgqrc~ 973 (1705)
T KOG1836|consen 896 AGSELPSLTCNPVTGQCECKPNVEGRDCLYCFKGFFNLNSGVGCEPCNCDPTGSESSDCDVGTGQCYCRPGVTGQRCD 973 (1705)
T ss_pred CCcccccccCCCcccceeccCCCCccccccccccccccCCCCCcccccccccccccccccccCCceeeecCccccccC
Confidence 88753 679999999999999999999999999999874 5799999999999999999 89999999999998764
No 6
>KOG3512|consensus
Probab=99.09 E-value=2.1e-10 Score=97.31 Aligned_cols=126 Identities=26% Similarity=0.685 Sum_probs=97.1
Q ss_pred CCCCCCCCccCCCCCCCcccCC---CceeecCCCCccCCCcccCCCccc-------cCCCCCCccCCCCCCCC---CCCc
Q psy15475 67 PCQCYIPGTLETETFTPVCDQL---TGQCSCKPHVVGTNCDQCEVGHYN-------IISGEGCKSCDCDPVGS---LNRT 133 (204)
Q Consensus 67 ~c~C~~~g~~~~~~~~~~C~~~---~g~C~C~~g~~G~~C~~C~~G~~g-------~~~~~~C~~c~C~~~g~---~~~~ 133 (204)
+|.|++++++ |.-. .-.|.|.++++|.-|++|++-|+. .+....|..|.|+.... .+..
T Consensus 277 RCKCNgHAs~--------Cv~d~~~~ltCdC~HNTaGPdCgrCKpfy~dRPW~raT~~~a~~c~ac~Cn~harrcrfn~E 348 (592)
T KOG3512|consen 277 RCKCNGHASR--------CVMDESSHLTCDCEHNTAGPDCGRCKPFYYDRPWGRATALPANECVACNCNGHARRCRFNME 348 (592)
T ss_pred eeeecCccce--------eeeccCCceEEecccCCCCCCcccccccccCCCccccccCCCccccccccchhhhhcccchh
Confidence 4667777663 5321 247999999999999999998874 23346788888887543 2222
Q ss_pred ccCCC-----Cee-ecCCCCccCCCCCCCCCcccCCC------CCCccccCCCCCCCCCCCC-CCCcccCCCCCCcccCC
Q psy15475 134 CDPIT-----GQC-LCRPGVTGTRCELCQPNHYGFSL------DGCKPCMCDPIGSNSLQCD-PSGQCPGVFMNRAEMSS 200 (204)
Q Consensus 134 C~~~~-----g~C-~C~~g~~G~~C~~C~~g~~g~~~------~~c~~C~C~~~g~~~~~C~-~~g~C~c~~~~~g~~~~ 200 (204)
+...+ |.| .|+-+..|++|..|..|||-... +.|+.|+|.+.|+.+.+|+ .+|||.|+.|-+|..|-
T Consensus 349 ly~lSgr~SggvClnCrHnTaGrhChyCreGyyRd~s~pl~hrkaCk~CdChpVGs~gktCNq~tGqCpCkeGvtG~tCn 428 (592)
T KOG3512|consen 349 LYRLSGRRSGGVCLNCRHNTAGRHCHYCREGYYRDGSKPLTHRKACKACDCHPVGSAGKTCNQTTGQCPCKEGVTGLTCN 428 (592)
T ss_pred hhcccCccccceEeecccCCCCcccccccCccccCCCCCCchhhhhhhcCCcccccccccccccCCcccCCCCCcccccc
Confidence 32223 345 48999999999999999998653 4589999999999999999 89999999999998864
No 7
>KOG4289|consensus
Probab=99.09 E-value=2.7e-10 Score=106.68 Aligned_cols=110 Identities=30% Similarity=0.753 Sum_probs=90.2
Q ss_pred CCcCCCCCCCCccCCCCCCCcccC----CCceeecCCCCccCCCc-----ccCCCccccCCCCCCccCCCCCCCCCCCcc
Q psy15475 64 DCEPCQCYIPGTLETETFTPVCDQ----LTGQCSCKPHVVGTNCD-----QCEVGHYNIISGEGCKSCDCDPVGSLNRTC 134 (204)
Q Consensus 64 ~C~~c~C~~~g~~~~~~~~~~C~~----~~g~C~C~~g~~G~~C~-----~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C 134 (204)
.|.-.||.+.|+ |.. ..+.|.|+++|.|.+|| .|+.||||+ ..|.+|.|+-.......|
T Consensus 1718 vC~lnpc~~~g~---------Cv~sp~a~GY~C~C~~g~~G~~Ce~~~dq~CPrGWWG~---P~CgpC~CavsKgfdp~C 1785 (2531)
T KOG4289|consen 1718 VCSLNPCENQGT---------CVRSPGAHGYTCECPPGYTGPYCELRADQPCPRGWWGF---PTCGPCNCAVSKGFDPDC 1785 (2531)
T ss_pred hhcccccccCce---------eecCCCCCceeEECCCcccCcchhhhccCCCCCcccCC---CCccCccccccCCCCCCc
Confidence 466777877777 543 24589999999999998 599999983 468899999877777889
Q ss_pred cCCCCeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCCcccC
Q psy15475 135 DPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQCPGVFMNRAEMS 199 (204)
Q Consensus 135 ~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~~~g~C~c~~~~~g~~~ 199 (204)
++.+|+|+||..+.- +..+|.+|+|- .|+.+..|+.+|||.|+++--|+.|
T Consensus 1786 nKt~G~CqCKe~hy~-------------~~~~Cl~CdC~-~Gs~Sr~C~adGqC~C~pgaiGRqC 1836 (2531)
T KOG4289|consen 1786 NKTNGQCQCKENHYR-------------PIGSCLPCDCY-FGSDSRECDADGQCPCKPGAIGRQC 1836 (2531)
T ss_pred cccCcceeecccccc-------------CCCcceeeccc-cCCCcccccCCCcCCCCCccccccc
Confidence 999999999986532 12358999998 8999999999999999999888765
No 8
>KOG4289|consensus
Probab=98.98 E-value=1.7e-09 Score=101.57 Aligned_cols=124 Identities=35% Similarity=0.883 Sum_probs=92.4
Q ss_pred ccCCCCCCCCCccCCCC----ccccCCCCcCCCCCC-----CCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCCCccc
Q psy15475 16 CVGPPSDILKSVAGTTG----DCLKCIYNTGGPQCD-----TCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCD 86 (204)
Q Consensus 16 c~~~~~~~~~~C~~~~g----~C~~C~~~~~G~~C~-----~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~~~~~C~ 86 (204)
|.-.|+.+.++|....+ .|+ |++++.|+.|+ .|+.||||.+ .|.+|+|...... .+.|+
T Consensus 1719 C~lnpc~~~g~Cv~sp~a~GY~C~-C~~g~~G~~Ce~~~dq~CPrGWWG~P------~CgpC~CavsKgf-----dp~Cn 1786 (2531)
T KOG4289|consen 1719 CSLNPCENQGTCVRSPGAHGYTCE-CPPGYTGPYCELRADQPCPRGWWGFP------TCGPCNCAVSKGF-----DPDCN 1786 (2531)
T ss_pred hcccccccCceeecCCCCCceeEE-CCCcccCcchhhhccCCCCCcccCCC------CccCccccccCCC-----CCCcc
Confidence 45568888888865433 486 99999999997 6999999943 4888888643221 23398
Q ss_pred CCCceeecCCCCccCCCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCCCC
Q psy15475 87 QLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDG 166 (204)
Q Consensus 87 ~~~g~C~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~ 166 (204)
..+|+|+|+..+ |.. ...|.+|.|- .|+...+|+ ..|+|.|++|..|++|++|-.-|.-+...+
T Consensus 1787 Kt~G~CqCKe~h------------y~~--~~~Cl~CdC~-~Gs~Sr~C~-adGqC~C~pgaiGRqCdrCd~pfaevttlg 1850 (2531)
T KOG4289|consen 1787 KTNGQCQCKENH------------YRP--IGSCLPCDCY-FGSDSRECD-ADGQCPCKPGAIGRQCDRCDNPFAEVTTLG 1850 (2531)
T ss_pred ccCcceeecccc------------ccC--CCcceeeccc-cCCCccccc-CCCcCCCCCccccccccccCChhhhccccC
Confidence 889999987653 221 2348889998 677777899 589999999999999999876665554455
Q ss_pred C
Q psy15475 167 C 167 (204)
Q Consensus 167 c 167 (204)
|
T Consensus 1851 C 1851 (2531)
T KOG4289|consen 1851 C 1851 (2531)
T ss_pred c
Confidence 5
No 9
>KOG1225|consensus
Probab=98.77 E-value=4.1e-08 Score=86.22 Aligned_cols=46 Identities=35% Similarity=0.622 Sum_probs=27.8
Q ss_pred CCCcccCCCCeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCCccc
Q psy15475 130 LNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQCPGVFMNRAEM 198 (204)
Q Consensus 130 ~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~~~g~C~c~~~~~g~~ 198 (204)
.++.|. .|+|.|.+||+|..|++ . .|.+.+ +|. .| |+|..||+|.+
T Consensus 320 g~G~Ci--~G~C~C~~Gy~G~~C~~--------------~-~C~~~g----~cv-~g-C~C~~Gw~G~d 365 (525)
T KOG1225|consen 320 GHGKCI--DGECLCDEGYTGELCIQ--------------R-ACSGGG----QCV-NG-CKCKKGWRGPD 365 (525)
T ss_pred CCCccc--CCceEeCCCCcCCcccc--------------c-ccCCCc----eec-cC-ceeccCccCCC
Confidence 345565 56677777777766643 1 244332 455 55 88888888776
No 10
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.75 E-value=2e-08 Score=59.95 Aligned_cols=40 Identities=65% Similarity=1.414 Sum_probs=35.1
Q ss_pred CCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCccc
Q psy15475 122 CDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYG 161 (204)
Q Consensus 122 c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g 161 (204)
|.|++.++....|+..+|+|.|+++|+|++|++|++|||+
T Consensus 1 C~C~~~G~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 1 CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CcCCCCCCCCCcccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 4567667666789988999999999999999999999998
No 11
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.65 E-value=5.9e-08 Score=58.95 Aligned_cols=43 Identities=53% Similarity=1.226 Sum_probs=37.7
Q ss_pred CCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCC
Q psy15475 122 CDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSL 164 (204)
Q Consensus 122 c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~ 164 (204)
|.|++.++....|+..+|+|.|+++|+|++|++|+++||+.+.
T Consensus 2 C~C~~~g~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 44 (50)
T cd00055 2 CDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPS 44 (50)
T ss_pred CcCcCCCCCCccccCCCCEEeCCCcCCCCCCCCCCCCCccCCC
Confidence 6677777666789988999999999999999999999999764
No 12
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=98.52 E-value=3.2e-08 Score=59.85 Aligned_cols=43 Identities=56% Similarity=1.392 Sum_probs=35.3
Q ss_pred CCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCC
Q psy15475 122 CDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSL 164 (204)
Q Consensus 122 c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~ 164 (204)
|.|++.++...+|+..+|+|.|+++|+|++|++|+++||+++.
T Consensus 1 C~C~~~~~~~~~C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 1 CDCNPHGSSSQTCDPSTGQCVCKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp ESSTTCCBCCSSEEETCEEESBSTTEESTTS-EE-TTEECSTT
T ss_pred CcCcCCCCCCCcccCCCCEEeccccccCCcCcCCCCccccccC
Confidence 3566666666889998999999999999999999999999864
No 13
>KOG1219|consensus
Probab=98.48 E-value=2.6e-07 Score=90.44 Aligned_cols=109 Identities=27% Similarity=0.627 Sum_probs=82.4
Q ss_pred cccCCCCCCCCCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCCCcccCC--Ccee
Q psy15475 15 LCVGPPSDILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQL--TGQC 92 (204)
Q Consensus 15 ~c~~~~~~~~~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~~~~~C~~~--~g~C 92 (204)
.|.-.||.++|.|.... -.|+.| .|++-|.|..|+.....|.+.||..+|+ |... ...|
T Consensus 3866 ~C~~npCqhgG~C~~~~---------~ggy~C-kCpsqysG~~CEi~~epC~snPC~~Ggt---------Cip~~n~f~C 3926 (4289)
T KOG1219|consen 3866 PCNDNPCQHGGTCISQP---------KGGYKC-KCPSQYSGNHCEIDLEPCASNPCLTGGT---------CIPFYNGFLC 3926 (4289)
T ss_pred ccccCcccCCCEecCCC---------CCceEE-eCcccccCcccccccccccCCCCCCCCE---------EEecCCCeeE
Confidence 46666777777775543 245556 6777777777777777899999999998 9653 4589
Q ss_pred ecCCCCccCCCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCCC--eeecCCCCccCCCCC
Q psy15475 93 SCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITG--QCLCRPGVTGTRCEL 154 (204)
Q Consensus 93 ~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g--~C~C~~g~~G~~C~~ 154 (204)
.|+.+|+|.+||.= | ..+|....|. .++.|....| .|.|.+|+.|+.|..
T Consensus 3927 nC~~gyTG~~Ce~~--G------i~eCs~n~C~----~gg~C~n~~gsf~CncT~g~~gr~c~~ 3978 (4289)
T KOG1219|consen 3927 NCPNGYTGKRCEAR--G------ISECSKNVCG----TGGQCINIPGSFHCNCTPGILGRTCCA 3978 (4289)
T ss_pred eCCCCccCceeecc--c------cccccccccc----CCceeeccCCceEeccChhHhcccCcc
Confidence 99999999999862 2 3467777776 4677877666 799999999999854
No 14
>KOG1219|consensus
Probab=98.44 E-value=4.6e-07 Score=88.81 Aligned_cols=107 Identities=30% Similarity=0.600 Sum_probs=83.9
Q ss_pred CCCcCCCCCCCCccCCCCCCCcccCC---CceeecCCCCccCCCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCC-
Q psy15475 63 GDCEPCQCYIPGTLETETFTPVCDQL---TGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPIT- 138 (204)
Q Consensus 63 ~~C~~c~C~~~g~~~~~~~~~~C~~~---~g~C~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~- 138 (204)
+.|...||+++|+ |.+. .+.|.|+..|.|.+||+ ....|.+.+|. .+++|.+..
T Consensus 3865 d~C~~npCqhgG~---------C~~~~~ggy~CkCpsqysG~~CEi---------~~epC~snPC~----~GgtCip~~n 3922 (4289)
T KOG1219|consen 3865 DPCNDNPCQHGGT---------CISQPKGGYKCKCPSQYSGNHCEI---------DLEPCASNPCL----TGGTCIPFYN 3922 (4289)
T ss_pred cccccCcccCCCE---------ecCCCCCceEEeCcccccCccccc---------ccccccCCCCC----CCCEEEecCC
Confidence 5688899999998 8654 34899999999999997 13568777887 577887643
Q ss_pred -CeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCC-CCC--cccCCCCCCcccCCcc
Q psy15475 139 -GQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCD-PSG--QCPGVFMNRAEMSSDD 202 (204)
Q Consensus 139 -g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~-~~g--~C~c~~~~~g~~~~~~ 202 (204)
..|.|+.||+|.+||.= | ++.|....|...| +|. ..| .|.|.+++.|++|..+
T Consensus 3923 ~f~CnC~~gyTG~~Ce~~-----G--i~eCs~n~C~~gg----~C~n~~gsf~CncT~g~~gr~c~~~ 3979 (4289)
T KOG1219|consen 3923 GFLCNCPNGYTGKRCEAR-----G--ISECSKNVCGTGG----QCINIPGSFHCNCTPGILGRTCCAE 3979 (4289)
T ss_pred CeeEeCCCCccCceeecc-----c--ccccccccccCCc----eeeccCCceEeccChhHhcccCccc
Confidence 46999999999999742 2 4567877887644 898 344 9999999999998654
No 15
>KOG1225|consensus
Probab=98.35 E-value=1.3e-06 Score=76.82 Aligned_cols=87 Identities=25% Similarity=0.508 Sum_probs=53.1
Q ss_pred cCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeecCCCCccCCCCC-------------------CCCCcccCCCCC
Q psy15475 106 CEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCEL-------------------CQPNHYGFSLDG 166 (204)
Q Consensus 106 C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~-------------------C~~g~~g~~~~~ 166 (204)
|..+|++ ..|..-.|.+..+..+.|. .|+|+|++||+|..|+. |.+||.|..++.
T Consensus 238 c~~~~~g----~~c~~~~C~~~c~~~g~c~--~G~CIC~~Gf~G~dC~e~~Cp~~cs~~g~~~~g~CiC~~g~~G~dCs~ 311 (525)
T KOG1225|consen 238 CPEGYFG----PLCSTIYCPGGCTGRGQCV--EGRCICPPGFTGDDCDELVCPVDCSGGGVCVDGECICNPGYSGKDCSI 311 (525)
T ss_pred cCCceeC----CccccccCCCCCcccceEe--CCeEeCCCCCcCCCCCcccCCcccCCCceecCCEeecCCCcccccccc
Confidence 4445552 3343344554444445564 57777888888777764 555555554421
Q ss_pred CccccCCCCCCCCCCCCCCCcccCCCCCCcccCCcc
Q psy15475 167 CKPCMCDPIGSNSLQCDPSGQCPGVFMNRAEMSSDD 202 (204)
Q Consensus 167 c~~C~C~~~g~~~~~C~~~g~C~c~~~~~g~~~~~~ 202 (204)
-.|....+..++|. .|+|+|..||+|+.|++.
T Consensus 312 ---~~cpadC~g~G~Ci-~G~C~C~~Gy~G~~C~~~ 343 (525)
T KOG1225|consen 312 ---RRCPADCSGHGKCI-DGECLCDEGYTGELCIQR 343 (525)
T ss_pred ---ccCCccCCCCCccc-CCceEeCCCCcCCccccc
Confidence 11222233355888 999999999999999873
No 16
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=98.09 E-value=7.4e-06 Score=48.74 Aligned_cols=28 Identities=57% Similarity=1.297 Sum_probs=26.6
Q ss_pred ccCCCceeecCCCCccCCCcccCCCccc
Q psy15475 85 CDQLTGQCSCKPHVVGTNCDQCEVGHYN 112 (204)
Q Consensus 85 C~~~~g~C~C~~g~~G~~C~~C~~G~~g 112 (204)
|+..+|+|.|+++|+|.+|++|++|||+
T Consensus 13 C~~~~G~C~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 13 CDPDTGQCECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred ccCCCCEEECCCCCCCCCCCcCCCCcCC
Confidence 8887899999999999999999999997
No 17
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=98.06 E-value=6.8e-06 Score=49.81 Aligned_cols=29 Identities=52% Similarity=1.241 Sum_probs=27.2
Q ss_pred ccCCCceeecCCCCccCCCcccCCCcccc
Q psy15475 85 CDQLTGQCSCKPHVVGTNCDQCEVGHYNI 113 (204)
Q Consensus 85 C~~~~g~C~C~~g~~G~~C~~C~~G~~g~ 113 (204)
|+..+|+|.|+++|+|.+|++|++|||+.
T Consensus 14 C~~~~G~C~C~~~~~G~~C~~C~~g~~~~ 42 (50)
T cd00055 14 CDPGTGQCECKPNTTGRRCDRCAPGYYGL 42 (50)
T ss_pred ccCCCCEEeCCCcCCCCCCCCCCCCCccC
Confidence 88889999999999999999999999974
No 18
>KOG1226|consensus
Probab=98.06 E-value=4.8e-05 Score=68.89 Aligned_cols=115 Identities=26% Similarity=0.555 Sum_probs=60.0
Q ss_pred eeeeecccccCC--CCCCCCCccC----CCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCC----CCCCCCccC
Q psy15475 8 VSVMDILLCVGP--PSDILKSVAG----TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPC----QCYIPGTLE 77 (204)
Q Consensus 8 ~~~~~~~~c~~~--~~~~~~~C~~----~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c----~C~~~g~~~ 77 (204)
+.+..+..|.|. .-.+...|+- +-|+|. |.++|.|..| .|+..-+...- . ...|+.. .|.+.|.
T Consensus 448 v~v~~~C~C~C~~~~e~~s~~C~g~G~~~CG~C~-C~~G~~G~~C-EC~~~~~ss~~-~-~~~Cr~~~~~~vCSgrG~-- 521 (783)
T KOG1226|consen 448 VIVQYNCECDCQDQGEPNSALCHGNGTFVCGQCR-CDEGWLGKKC-ECSTDELSSSE-E-EDKCRENSDSPVCSGRGD-- 521 (783)
T ss_pred EEeeccccccccccCCCCccccCCCCcEEeccee-cCCCCCCCcc-cCCccccCcHh-H-HhhccCCCCCCCcCCCCc--
Confidence 344444545443 2344445541 224564 7777777777 55544333210 0 1123321 3444443
Q ss_pred CCCCCCcccCCCceeecCCCCc----cCCCcccCCCccccCCCCCCccCCCCCC----CCCCCcccCCCCeeecCCCCcc
Q psy15475 78 TETFTPVCDQLTGQCSCKPHVV----GTNCDQCEVGHYNIISGEGCKSCDCDPV----GSLNRTCDPITGQCLCRPGVTG 149 (204)
Q Consensus 78 ~~~~~~~C~~~~g~C~C~~g~~----G~~C~~C~~G~~g~~~~~~C~~c~C~~~----g~~~~~C~~~~g~C~C~~g~~G 149 (204)
|. -|+|.|.+... |.+||- ....|... ...++.|. =|+|+|.+||+|
T Consensus 522 -------C~--CGqC~C~~~~~~~i~G~fCEC--------------DnfsC~r~~g~lC~g~G~C~--CG~CvC~~GwtG 576 (783)
T KOG1226|consen 522 -------CV--CGQCVCHKPDNGKIYGKFCEC--------------DNFSCERHKGVLCGGHGRCE--CGRCVCNPGWTG 576 (783)
T ss_pred -------Ee--CCceEecCCCCCceeeeeeec--------------cCcccccccCcccCCCCeEe--CCcEEcCCCCcc
Confidence 42 36777777666 555542 11111111 12456676 589999999999
Q ss_pred CCCC
Q psy15475 150 TRCE 153 (204)
Q Consensus 150 ~~C~ 153 (204)
..|+
T Consensus 577 ~~C~ 580 (783)
T KOG1226|consen 577 SACN 580 (783)
T ss_pred CCCC
Confidence 9995
No 19
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=97.95 E-value=5.2e-06 Score=50.07 Aligned_cols=30 Identities=50% Similarity=1.154 Sum_probs=25.9
Q ss_pred ccCCCceeecCCCCccCCCcccCCCccccC
Q psy15475 85 CDQLTGQCSCKPHVVGTNCDQCEVGHYNII 114 (204)
Q Consensus 85 C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~ 114 (204)
|+..+++|.|+++|+|++|++|+++||+..
T Consensus 13 C~~~~G~C~C~~~~~G~~C~~C~~g~~~~~ 42 (49)
T PF00053_consen 13 CDPSTGQCVCKPGTTGPRCDQCKPGYFGLP 42 (49)
T ss_dssp EEETCEEESBSTTEESTTS-EE-TTEECST
T ss_pred ccCCCCEEeccccccCCcCcCCCCcccccc
Confidence 888899999999999999999999999753
No 20
>smart00051 DSL delta serrate ligand.
Probab=97.50 E-value=0.00014 Score=46.24 Aligned_cols=43 Identities=21% Similarity=0.196 Sum_probs=29.3
Q ss_pred CCCCcccCCCCCCccccCCCCCCCCCCCCCCCcccCCCCCCcccC
Q psy15475 155 CQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQCPGVFMNRAEMS 199 (204)
Q Consensus 155 C~~g~~g~~~~~c~~C~C~~~g~~~~~C~~~g~C~c~~~~~g~~~ 199 (204)
|.++|||..++ ..|.+.+......+|+..|++.|.+||+|..|
T Consensus 21 C~~~~yG~~C~--~~C~~~~d~~~~~~Cd~~G~~~C~~Gw~G~~C 63 (63)
T smart00051 21 CDENYYGEGCN--KFCRPRDDFFGHYTCDENGNKGCLEGWMGPYC 63 (63)
T ss_pred CCCCCcCCccC--CEeCcCccccCCccCCcCCCEecCCCCcCCCC
Confidence 55566665554 44544332234668998899999999999876
No 21
>KOG4260|consensus
Probab=97.43 E-value=0.00017 Score=57.99 Aligned_cols=59 Identities=25% Similarity=0.527 Sum_probs=39.9
Q ss_pred CCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCCCcccCCCceeecCCCCccCCCcccCCCccc
Q psy15475 37 CIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYN 112 (204)
Q Consensus 37 C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g 112 (204)
|++++.|+.|..|+-|--. +|.- .-.|.+.|++ ..+|.|.|.+||+|..|..|.++||-
T Consensus 132 Cp~gtyGpdCl~Cpggser-~C~G------nG~C~GdGsR----------~GsGkCkC~~GY~Gp~C~~Cg~eyfe 190 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSER-PCFG------NGSCHGDGSR----------EGSGKCKCETGYTGPLCRYCGIEYFE 190 (350)
T ss_pred cCCCCcCCccccCCCCCcC-CcCC------CCcccCCCCC----------CCCCcccccCCCCCccccccchHHHH
Confidence 8888888888888654221 1110 1123333331 23679999999999999999999984
No 22
>KOG1226|consensus
Probab=97.18 E-value=0.0022 Score=58.49 Aligned_cols=119 Identities=29% Similarity=0.597 Sum_probs=67.6
Q ss_pred cccCCCCCCCCCccCCCCcc------ccCCCCcCCCCCC----------CCCCCCC----CCCCCCCCCCCcCC---CCC
Q psy15475 15 LCVGPPSDILKSVAGTTGDC------LKCIYNTGGPQCD----------TCLPGYF----GDALALPKGDCEPC---QCY 71 (204)
Q Consensus 15 ~c~~~~~~~~~~C~~~~g~C------~~C~~~~~G~~C~----------~C~~g~~----g~~c~~~~~~C~~c---~C~ 71 (204)
+|.|.++|.|..|+-.+..= ..|+....-+-|+ .|.+... |.-|+-+...|... -|.
T Consensus 479 ~C~C~~G~~G~~CEC~~~~~ss~~~~~~Cr~~~~~~vCSgrG~C~CGqC~C~~~~~~~i~G~fCECDnfsC~r~~g~lC~ 558 (783)
T KOG1226|consen 479 QCRCDEGWLGKKCECSTDELSSSEEEDKCRENSDSPVCSGRGDCVCGQCVCHKPDNGKIYGKFCECDNFSCERHKGVLCG 558 (783)
T ss_pred ceecCCCCCCCcccCCccccCcHhHHhhccCCCCCCCcCCCCcEeCCceEecCCCCCceeeeeeeccCcccccccCcccC
Confidence 36777888888886543221 1244433333332 3554443 76666443344432 155
Q ss_pred CCCccCCCCCCCcccCCCceeecCCCCccCCCcccCCCccccCCCCCCccC---CCCCCCCCCCcccCCCCeeecCCC-C
Q psy15475 72 IPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSC---DCDPVGSLNRTCDPITGQCLCRPG-V 147 (204)
Q Consensus 72 ~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c---~C~~~g~~~~~C~~~~g~C~C~~g-~ 147 (204)
++|. |. -|+|.|.+||+|..|+- +. +.+.|..- .|+ ..++|. =|+|.|... |
T Consensus 559 g~G~---------C~--CG~CvC~~GwtG~~C~C-~~------std~C~~~~G~iCS----GrG~C~--Cg~C~C~~~~~ 614 (783)
T KOG1226|consen 559 GHGR---------CE--CGRCVCNPGWTGSACNC-PL------STDTCESSDGQICS----GRGTCE--CGRCKCTDPPY 614 (783)
T ss_pred CCCe---------Ee--CCcEEcCCCCccCCCCC-CC------CCccccCCCCceeC----CCceee--CCceEcCCCCc
Confidence 5554 53 47899999999999963 21 12333211 122 345565 467888765 9
Q ss_pred ccCCCCCCCC
Q psy15475 148 TGTRCELCQP 157 (204)
Q Consensus 148 ~G~~C~~C~~ 157 (204)
.|..||.|+.
T Consensus 615 sG~~CE~cpt 624 (783)
T KOG1226|consen 615 SGEFCEKCPT 624 (783)
T ss_pred CcchhhcCCC
Confidence 9999998763
No 23
>KOG3509|consensus
Probab=97.02 E-value=0.0027 Score=59.76 Aligned_cols=127 Identities=31% Similarity=0.746 Sum_probs=82.0
Q ss_pred cCCCCccccCCCCcCCCCCCCCCCCCCCCCCC-CCCCCCcCCCCCCCCccCCCCCCCcccCCCcee-ecCCCCccCCCcc
Q psy15475 28 AGTTGDCLKCIYNTGGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQLTGQC-SCKPHVVGTNCDQ 105 (204)
Q Consensus 28 ~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~-~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~g~C-~C~~g~~G~~C~~ 105 (204)
+..+.+|+ |+.++.|.+|+.|.++|.-.... .....+..+.+..++. . |....+.+ .|+..+.|.+|+.
T Consensus 714 ~~~~~~C~-c~~g~~G~~ce~c~e~~~ls~t~~~~~~~~~~c~~~~h~~------~--c~~~~~~nt~~q~~~~~~~~~~ 784 (964)
T KOG3509|consen 714 AAEVEQCQ-CPKGLVGTSCEDCAEGYTLSTTGGLYPGLCEDCECNSHIS------Q--CEDDLGYNTDCQNNTEGDRCEL 784 (964)
T ss_pred hhhccccc-cCccccCcccccccccccccccCCcCcccCcccccCCCcc------c--ccccccccccccccCccceeee
Confidence 34455797 99999999999999998654322 2223455666666655 2 76656666 4899999999999
Q ss_pred cCCCccccCC-C--CCCcc-------CCCCCCCCCCCcccCCCCee-ecCCCCccCCCCCCCCCcccCCCC
Q psy15475 106 CEVGHYNIIS-G--EGCKS-------CDCDPVGSLNRTCDPITGQC-LCRPGVTGTRCELCQPNHYGFSLD 165 (204)
Q Consensus 106 C~~G~~g~~~-~--~~C~~-------c~C~~~g~~~~~C~~~~g~C-~C~~g~~G~~C~~C~~g~~g~~~~ 165 (204)
|.+||++..- + .++.+ +.+.... .-.++...-.| .|+++.+|.+|+++.++|+++..+
T Consensus 785 ~~~g~~~da~~g~~~D~~p~~~l~~~~~~~~r~--~l~~~~~~~~~~~~p~~~~g~~~~~~~~~~~~~atd 853 (964)
T KOG3509|consen 785 CSPGTYGDARRGTPEDCRPATALTIQCSCNNRS--PLSCDGFGPGCLLCPHNTEGTTCERVKAGYYGFATD 853 (964)
T ss_pred cCCCccccCccCCcccCCccchhhhhhhhcccC--ccccccCCCCcccCCCCccccchhhhccccccccCc
Confidence 9999997321 1 12222 1111110 01122112234 488999999999999999997654
No 24
>KOG4260|consensus
Probab=96.85 E-value=0.0015 Score=52.69 Aligned_cols=90 Identities=27% Similarity=0.491 Sum_probs=56.1
Q ss_pred cCCCCccCCCcccCCCccccCCCCCCc-cCCCCCCCCCCCcccCCCCeeecCCCCccCCCCCCCCCcccCCC----CCCc
Q psy15475 94 CKPHVVGTNCDQCEVGHYNIISGEGCK-SCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSL----DGCK 168 (204)
Q Consensus 94 C~~g~~G~~C~~C~~G~~g~~~~~~C~-~c~C~~~g~~~~~C~~~~g~C~C~~g~~G~~C~~C~~g~~g~~~----~~c~ 168 (204)
|++|+.|+.|..|+-|-- +.|. .-+|+..|+. ..+|.|.|.+||+|+.|..|.++||-... ..|.
T Consensus 132 Cp~gtyGpdCl~Cpggse-----r~C~GnG~C~GdGsR-----~GsGkCkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt 201 (350)
T KOG4260|consen 132 CPDGTYGPDCLQCPGGSE-----RPCFGNGSCHGDGSR-----EGSGKCKCETGYTGPLCRYCGIEYFESSRNEQHLVCT 201 (350)
T ss_pred cCCCCcCCccccCCCCCc-----CCcCCCCcccCCCCC-----CCCCcccccCCCCCccccccchHHHHhhcccccchhh
Confidence 888999999988875432 2222 1224433332 23688999999999999999999987543 2345
Q ss_pred cccCCCCCCCCCCCC--CCCccc-CCCCCCcc
Q psy15475 169 PCMCDPIGSNSLQCD--PSGQCP-GVFMNRAE 197 (204)
Q Consensus 169 ~C~C~~~g~~~~~C~--~~g~C~-c~~~~~g~ 197 (204)
+|+=.- ...|. ....|. |+.||.-.
T Consensus 202 ~Ch~~C----~~~Csg~~~k~C~kCkkGW~ld 229 (350)
T KOG4260|consen 202 ACHEGC----LGVCSGESSKGCSKCKKGWKLD 229 (350)
T ss_pred hhhhhh----hcccCCCCCCChhhhcccceec
Confidence 553221 12455 345555 77777643
No 25
>smart00051 DSL delta serrate ligand.
Probab=96.70 E-value=0.0024 Score=40.53 Aligned_cols=22 Identities=36% Similarity=0.643 Sum_probs=18.5
Q ss_pred CCCcccCCCCeeecCCCCccCCC
Q psy15475 130 LNRTCDPITGQCLCRPGVTGTRC 152 (204)
Q Consensus 130 ~~~~C~~~~g~C~C~~g~~G~~C 152 (204)
.+.+|+. .|.+.|.+||+|+.|
T Consensus 42 ~~~~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T smart00051 42 GHYTCDE-NGNKGCLEGWMGPYC 63 (63)
T ss_pred CCccCCc-CCCEecCCCCcCCCC
Confidence 4567886 699999999999876
No 26
>KOG1217|consensus
Probab=96.68 E-value=0.055 Score=46.92 Aligned_cols=89 Identities=25% Similarity=0.538 Sum_probs=47.0
Q ss_pred eeecCCCCccCCCcccCCCccccCCCCCCccCC-CCCCCCCCCcccCCC--CeeecCCCCccCCCC------CCCCCccc
Q psy15475 91 QCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCD-CDPVGSLNRTCDPIT--GQCLCRPGVTGTRCE------LCQPNHYG 161 (204)
Q Consensus 91 ~C~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c~-C~~~g~~~~~C~~~~--g~C~C~~g~~G~~C~------~C~~g~~g 161 (204)
.|.++++|.+..+..+. ....|..-. |. ++++|.... ..|.|+++|.|..|. .|.+.+.
T Consensus 253 ~C~~~~g~~~~~~~~~~-------~~~~C~~~~~c~----~~~~C~~~~~~~~C~C~~g~~g~~~~~~~~~~~C~~~~~- 320 (487)
T KOG1217|consen 253 TCRCPEGYTGDACVTCV-------DVDSCALIASCP----NGGTCVNVPGSYRCTCPPGFTGRLCTECVDVDECSPRNA- 320 (487)
T ss_pred eeeCCCCccccccceee-------eccccCCCCccC----CCCeeecCCCcceeeCCCCCCCCCCcccccccccccccc-
Confidence 56666677666531000 123343321 33 345666543 578999999999982 1222111
Q ss_pred CCCCCCccccCCCCCCCCCCCC-----CCCcccCCCCCCcccCCcc
Q psy15475 162 FSLDGCKPCMCDPIGSNSLQCD-----PSGQCPGVFMNRAEMSSDD 202 (204)
Q Consensus 162 ~~~~~c~~C~C~~~g~~~~~C~-----~~g~C~c~~~~~g~~~~~~ 202 (204)
.-.|.+. ..|. ....|.+..++.|..|+..
T Consensus 321 -------~~~c~~g----~~C~~~~~~~~~~C~c~~~~~g~~C~~~ 355 (487)
T KOG1217|consen 321 -------GGPCANG----GTCNTLGSFGGFRCACGPGFTGRRCEDS 355 (487)
T ss_pred -------CCcCCCC----cccccCCCCCCCCcCCCCCCCCCccccC
Confidence 1123322 1342 2345888888888887643
No 27
>PF12661 hEGF: Human growth factor-like EGF; PDB: 2YGQ_A 2E26_A 3A7Q_A 2YGP_A 2YGO_A 1HRE_A 1HAE_A 1HAF_A 1HRF_A.
Probab=96.41 E-value=0.0017 Score=27.99 Aligned_cols=13 Identities=54% Similarity=1.359 Sum_probs=10.1
Q ss_pred eeecCCCCccCCC
Q psy15475 140 QCLCRPGVTGTRC 152 (204)
Q Consensus 140 ~C~C~~g~~G~~C 152 (204)
.|.|++||+|.+|
T Consensus 1 ~C~C~~G~~G~~C 13 (13)
T PF12661_consen 1 TCQCPPGWTGPNC 13 (13)
T ss_dssp EEEE-TTEETTTT
T ss_pred CccCcCCCcCCCC
Confidence 4889999999876
No 28
>KOG1388|consensus
Probab=96.40 E-value=0.0033 Score=49.06 Aligned_cols=63 Identities=37% Similarity=1.028 Sum_probs=49.7
Q ss_pred ee-ecCCCCccCCCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeec-CCCCccCCCCCCC
Q psy15475 91 QC-SCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLC-RPGVTGTRCELCQ 156 (204)
Q Consensus 91 ~C-~C~~g~~G~~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C-~~g~~G~~C~~C~ 156 (204)
.| .|..+.+|.+|++|..||||...+..|+++.|+... .-+...+++|.| ..++.|.+|++|.
T Consensus 65 v~~~~~N~~~g~~c~kc~~g~~GdtN~g~c~~~~~~g~~---~~~~~~~~~c~c~~kgvvgd~c~~~e 129 (217)
T KOG1388|consen 65 VCWRCENGTTGAHCEKCIVGFYGDTNGGKCQPCDCNGGA---SACVTLTGKCFCTTKGVVGDLCPKCE 129 (217)
T ss_pred eeeeccCccccccCCceEEEEEecCCCCccCHhhhcCCe---eeeeccCCccccccceEecccCcccc
Confidence 44 378899999999999999996556778888887432 236667899999 4599999998865
No 29
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.87 E-value=0.01 Score=32.25 Aligned_cols=23 Identities=39% Similarity=0.914 Sum_probs=19.8
Q ss_pred CCCcccCCCCeeecCCCCccCCC
Q psy15475 130 LNRTCDPITGQCLCRPGVTGTRC 152 (204)
Q Consensus 130 ~~~~C~~~~g~C~C~~g~~G~~C 152 (204)
.+++|+...++|.|.+||+|..|
T Consensus 10 ~~G~C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 10 GHGTCVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred CCCEEeCCCCEEECCCCCcCCCC
Confidence 57889876799999999999876
No 30
>PF07974 EGF_2: EGF-like domain; InterPro: IPR013111 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length. This entry contains EGF domains found in a variety of extracellular and membrane proteins
Probab=95.55 E-value=0.014 Score=31.72 Aligned_cols=26 Identities=35% Similarity=0.847 Sum_probs=21.8
Q ss_pred CCCCCCccCCCCCCCcccCCCceeecCCCCccCCC
Q psy15475 69 QCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNC 103 (204)
Q Consensus 69 ~C~~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~~C 103 (204)
.|.++|+ |+...++|.|.++|+|..|
T Consensus 7 ~C~~~G~---------C~~~~g~C~C~~g~~G~~C 32 (32)
T PF07974_consen 7 ICSGHGT---------CVSPCGRCVCDSGYTGPDC 32 (32)
T ss_pred ccCCCCE---------EeCCCCEEECCCCCcCCCC
Confidence 4778888 9765799999999999876
No 31
>KOG1218|consensus
Probab=95.17 E-value=0.31 Score=40.32 Aligned_cols=51 Identities=24% Similarity=0.476 Sum_probs=24.5
Q ss_pred eeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCC-CCCcccCCCCCCcccCC
Q psy15475 140 QCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCD-PSGQCPGVFMNRAEMSS 200 (204)
Q Consensus 140 ~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~-~~g~C~c~~~~~g~~~~ 200 (204)
.|.+..+|.+.+|.. .++++..+. ..| .+ ...++ .++.|.|..||.|.++.
T Consensus 125 ~c~~~~~~~~~~C~~--~~~~g~~C~--~~c--~~----~~~~~~~~~~c~c~~g~~g~~~~ 176 (316)
T KOG1218|consen 125 ECRCGGGYIGEQCGE--ENLVGLKCQ--RDC--QC----TGGCDCKNGICTCQPGFVGVFCV 176 (316)
T ss_pred ceecCCcCccccccc--cCCCCCCcc--CCC--CC----ccccCCCCCceeccCCccccccc
Confidence 355555565555544 445554433 222 11 11333 45666666666665543
No 32
>KOG1388|consensus
Probab=94.86 E-value=0.012 Score=45.90 Aligned_cols=73 Identities=36% Similarity=0.891 Sum_probs=53.9
Q ss_pred CCCCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCccCCCCCCCcccCCCceeecC-CCCccC
Q psy15475 23 ILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCK-PHVVGT 101 (204)
Q Consensus 23 ~~~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~g~C~C~-~g~~G~ 101 (204)
.++.|.+. -.|-.|..++.|..|++|..||+|+ +....|.++.|.+.... |...++.|.|+ -++.|+
T Consensus 56 Gh~~c~t~-~v~~~~~N~~~g~~c~kc~~g~~Gd---tN~g~c~~~~~~g~~~~--------~~~~~~~c~c~~kgvvgd 123 (217)
T KOG1388|consen 56 GHSDCNTQ-HVCWRCENGTTGAHCEKCIVGFYGD---TNGGKCQPCDCNGGASA--------CVTLTGKCFCTTKGVVGD 123 (217)
T ss_pred CCCCcccc-eeeeeccCccccccCCceEEEEEec---CCCCccCHhhhcCCeee--------eeccCCccccccceEecc
Confidence 44455443 3455788999999999999999996 22346888888766541 67778999994 488899
Q ss_pred CCcccC
Q psy15475 102 NCDQCE 107 (204)
Q Consensus 102 ~C~~C~ 107 (204)
+|++|.
T Consensus 124 ~c~~~e 129 (217)
T KOG1388|consen 124 LCPKCE 129 (217)
T ss_pred cCcccc
Confidence 998765
No 33
>PF00008 EGF: EGF-like domain This is a sub-family of the Pfam entry This is a sub-family of the Pfam entry; InterPro: IPR006209 A sequence of about thirty to forty amino-acid residues long found in the sequence of epidermal growth factor (EGF) has been shown [, , , , ] to be present, in a more or less conserved form, in a large number of other, mostly animal proteins. The list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied. The functional significance of EGF domains in what appear to be unrelated proteins is not yet clear. However, a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase). The EGF domain includes six cysteine residues which have been shown (in EGF) to be involved in disulphide bonds. The main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet. Subdomains between the conserved cysteines vary in length.; GO: 0005515 protein binding; PDB: 1WHE_A 1CCF_A 1APO_A 1WHF_A 2VJ3_A 1TOZ_A 4D90_B 3CFW_A 1EDM_B 1IXA_A ....
Probab=94.64 E-value=0.014 Score=31.69 Aligned_cols=29 Identities=34% Similarity=0.768 Sum_probs=21.4
Q ss_pred CcCCCCCCCCccCCCCCCCcccCC---CceeecCCCCccCC
Q psy15475 65 CEPCQCYIPGTLETETFTPVCDQL---TGQCSCKPHVVGTN 102 (204)
Q Consensus 65 C~~c~C~~~g~~~~~~~~~~C~~~---~g~C~C~~g~~G~~ 102 (204)
|.+.+|.++++ |... ...|.|+++|+|++
T Consensus 1 C~~~~C~n~g~---------C~~~~~~~y~C~C~~G~~G~~ 32 (32)
T PF00008_consen 1 CSSNPCQNGGT---------CIDLPGGGYTCECPPGYTGKR 32 (32)
T ss_dssp TTTTSSTTTEE---------EEEESTSEEEEEEBTTEESTT
T ss_pred CCCCcCCCCeE---------EEeCCCCCEEeECCCCCccCC
Confidence 34557888887 8543 45899999999864
No 34
>KOG1218|consensus
Probab=94.59 E-value=0.65 Score=38.37 Aligned_cols=52 Identities=40% Similarity=0.992 Sum_probs=27.2
Q ss_pred ccCCCceeecCCCCccCCCcccCCCccccCCCCCCc-cCCCCCCCCCCCcccCCCCeeecCCCCcc
Q psy15475 85 CDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCK-SCDCDPVGSLNRTCDPITGQCLCRPGVTG 149 (204)
Q Consensus 85 C~~~~g~C~C~~g~~G~~C~~C~~G~~g~~~~~~C~-~c~C~~~g~~~~~C~~~~g~C~C~~g~~G 149 (204)
+....+.|.|.++|.|.++..-... |. .+.+. +++.|+...+.+.+.+.+.+
T Consensus 157 ~~~~~~~c~c~~g~~g~~~~~~~~~---------c~~~~~~~----~g~~C~~~~~~~~~~~~~~~ 209 (316)
T KOG1218|consen 157 CDCKNGICTCQPGFVGVFCVESCSG---------CSPLTACE----NGAKCNRSTGSCLCYPGPSG 209 (316)
T ss_pred cCCCCCceeccCCcccccccccCCC---------cCCCcccC----CCCeeeccccccccCCCCcc
Confidence 3334567777777777776542211 21 12222 23456666666666665544
No 35
>KOG1217|consensus
Probab=94.31 E-value=0.38 Score=41.63 Aligned_cols=89 Identities=35% Similarity=0.784 Sum_probs=49.0
Q ss_pred CCCCCCCCCCCCCCC--CCCCCCCcCCC-CCCCCccCCCCCCCcccCCC--ceeecCCCCccCCCcccCCCccccCCCCC
Q psy15475 44 PQCDTCLPGYFGDAL--ALPKGDCEPCQ-CYIPGTLETETFTPVCDQLT--GQCSCKPHVVGTNCDQCEVGHYNIISGEG 118 (204)
Q Consensus 44 ~~C~~C~~g~~g~~c--~~~~~~C~~c~-C~~~g~~~~~~~~~~C~~~~--g~C~C~~g~~G~~C~~C~~G~~g~~~~~~ 118 (204)
+.| +|++||.+..+ ....+.|.... |.+.+. |.... ..|.|+++|.|..|..+.. ...
T Consensus 252 ~~C-~~~~g~~~~~~~~~~~~~~C~~~~~c~~~~~---------C~~~~~~~~C~C~~g~~g~~~~~~~~-------~~~ 314 (487)
T KOG1217|consen 252 YTC-RCPEGYTGDACVTCVDVDSCALIASCPNGGT---------CVNVPGSYRCTCPPGFTGRLCTECVD-------VDE 314 (487)
T ss_pred eee-eCCCCccccccceeeeccccCCCCccCCCCe---------eecCCCcceeeCCCCCCCCCCccccc-------ccc
Confidence 345 55777777652 23344566543 666665 75543 5788999999988711111 112
Q ss_pred Cc----cCCCCCCCCCCCccc----CCCCeeecCCCCccCCCC
Q psy15475 119 CK----SCDCDPVGSLNRTCD----PITGQCLCRPGVTGTRCE 153 (204)
Q Consensus 119 C~----~c~C~~~g~~~~~C~----~~~g~C~C~~g~~G~~C~ 153 (204)
|. ...|.. ++.|. .....|.|.++|.|.+|+
T Consensus 315 C~~~~~~~~c~~----g~~C~~~~~~~~~~C~c~~~~~g~~C~ 353 (487)
T KOG1217|consen 315 CSPRNAGGPCAN----GGTCNTLGSFGGFRCACGPGFTGRRCE 353 (487)
T ss_pred ccccccCCcCCC----CcccccCCCCCCCCcCCCCCCCCCccc
Confidence 21 112322 22331 112358888888888886
No 36
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=93.68 E-value=0.11 Score=28.65 Aligned_cols=32 Identities=34% Similarity=0.882 Sum_probs=21.2
Q ss_pred CCcC-CCCCCCCccCCCCCCCcccCCC--ceeecCCCCc-cCCCc
Q psy15475 64 DCEP-CQCYIPGTLETETFTPVCDQLT--GQCSCKPHVV-GTNCD 104 (204)
Q Consensus 64 ~C~~-c~C~~~g~~~~~~~~~~C~~~~--g~C~C~~g~~-G~~C~ 104 (204)
+|.. .+|.+.+. |.+.. ..|.|+++|. |.+|+
T Consensus 4 ~C~~~~~C~~~~~---------C~~~~g~~~C~C~~g~~~g~~C~ 39 (39)
T smart00179 4 ECASGNPCQNGGT---------CVNTVGSYRCECPPGYTDGRNCE 39 (39)
T ss_pred cCcCCCCcCCCCE---------eECCCCCeEeECCCCCccCCcCC
Confidence 4544 45666655 75443 4789999998 87774
No 37
>KOG1214|consensus
Probab=92.93 E-value=0.45 Score=44.53 Aligned_cols=48 Identities=29% Similarity=0.596 Sum_probs=29.1
Q ss_pred CeeecCCCCccCCCCCCCCCcccCCCCCCccccCCCCCCCCCCCC---CCCcccCCCCCCcc
Q psy15475 139 GQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCD---PSGQCPGVFMNRAE 197 (204)
Q Consensus 139 g~C~C~~g~~G~~C~~C~~g~~g~~~~~c~~C~C~~~g~~~~~C~---~~g~C~c~~~~~g~ 197 (204)
+.|.|.|||.|. |+.-..-+.|.+-.|.+.. .|- ....|.|.+||.|+
T Consensus 809 y~C~CLPGfsGD-------G~~c~dvDeC~psrChp~A----~CyntpgsfsC~C~pGy~GD 859 (1289)
T KOG1214|consen 809 YSCACLPGFSGD-------GHQCTDVDECSPSRCHPAA----TCYNTPGSFSCRCQPGYYGD 859 (1289)
T ss_pred EEEeecCCccCC-------ccccccccccCccccCCCc----eEecCCCcceeecccCccCC
Confidence 357777777663 2211112456666666533 565 46889999998885
No 38
>KOG3509|consensus
Probab=92.55 E-value=1.1 Score=42.99 Aligned_cols=95 Identities=25% Similarity=0.512 Sum_probs=60.9
Q ss_pred cCCCCCCCCCccCCCCccccCCCCcCCCCCCCCCCCCCCCCCCCCCCCCcCCCCCCCCc---cCCCCCCCcccCCCcee-
Q psy15475 17 VGPPSDILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGT---LETETFTPVCDQLTGQC- 92 (204)
Q Consensus 17 ~~~~~~~~~~C~~~~g~C~~C~~~~~G~~C~~C~~g~~g~~c~~~~~~C~~c~C~~~g~---~~~~~~~~~C~~~~g~C- 92 (204)
.+...++...|+...+.+..|.+++.|.+|+.|.+||++++-......+.+ .+..... .++.. ..+......|
T Consensus 753 ~c~~~~h~~~c~~~~~~nt~~q~~~~~~~~~~~~~g~~~da~~g~~~D~~p-~~~l~~~~~~~~r~~--l~~~~~~~~~~ 829 (964)
T KOG3509|consen 753 DCECNSHISQCEDDLGYNTDCQNNTEGDRCELCSPGTYGDARRGTPEDCRP-ATALTIQCSCNNRSP--LSCDGFGPGCL 829 (964)
T ss_pred ccccCCCcccccccccccccccccCccceeeecCCCccccCccCCcccCCc-cchhhhhhhhcccCc--cccccCCCCcc
Confidence 344566677777777788899999999999999999999876533222333 0100000 00000 0022222234
Q ss_pred ecCCCCccCCCcccCCCccccC
Q psy15475 93 SCKPHVVGTNCDQCEVGHYNII 114 (204)
Q Consensus 93 ~C~~g~~G~~C~~C~~G~~g~~ 114 (204)
.|++++.|.+|+.+.++|+++.
T Consensus 830 ~~p~~~~g~~~~~~~~~~~~~a 851 (964)
T KOG3509|consen 830 LCPHNTEGTTCERVKAGYYGFA 851 (964)
T ss_pred cCCCCccccchhhhcccccccc
Confidence 5999999999999999999854
No 39
>KOG1214|consensus
Probab=92.41 E-value=0.91 Score=42.61 Aligned_cols=71 Identities=28% Similarity=0.675 Sum_probs=46.5
Q ss_pred CCCCC-CCccCCCCccccCCCCc-CCCCCCCCCCCCCCCCCC-CCCCCCcCCCCCCCCccCCCCCCCcccCCC--ceeec
Q psy15475 20 PSDIL-KSVAGTTGDCLKCIYNT-GGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQLT--GQCSC 94 (204)
Q Consensus 20 ~~~~~-~~C~~~~g~C~~C~~~~-~G~~C~~C~~g~~g~~c~-~~~~~C~~c~C~~~g~~~~~~~~~~C~~~~--g~C~C 94 (204)
+|..+ ..|. ..+++. |.++- .-+.| .|.|||.|+.-. .+.++|.+.-|+..++ |.... ..|.|
T Consensus 785 ~Ce~g~h~C~-i~g~a~-c~~hGgs~y~C-~CLPGfsGDG~~c~dvDeC~psrChp~A~---------CyntpgsfsC~C 852 (1289)
T KOG1214|consen 785 PCEDGSHTCA-IAGQAR-CVHHGGSTYSC-ACLPGFSGDGHQCTDVDECSPSRCHPAAT---------CYNTPGSFSCRC 852 (1289)
T ss_pred ccccCccccC-cCCceE-EEecCCceEEE-eecCCccCCccccccccccCccccCCCce---------EecCCCcceeec
Confidence 44444 4452 345554 55432 33467 899999987533 3457899888988887 86654 47899
Q ss_pred CCCCccCC
Q psy15475 95 KPHVVGTN 102 (204)
Q Consensus 95 ~~g~~G~~ 102 (204)
.+||.|+-
T Consensus 853 ~pGy~GDG 860 (1289)
T KOG1214|consen 853 QPGYYGDG 860 (1289)
T ss_pred ccCccCCC
Confidence 99988753
No 40
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=92.24 E-value=0.013 Score=37.20 Aligned_cols=21 Identities=14% Similarity=0.107 Sum_probs=14.1
Q ss_pred CCCCCCCCcccCCCCCCcccC
Q psy15475 179 SLQCDPSGQCPGVFMNRAEMS 199 (204)
Q Consensus 179 ~~~C~~~g~C~c~~~~~g~~~ 199 (204)
.-+|+.+|+=+|.+||+|..|
T Consensus 43 hy~Cd~~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 43 HYTCDSNGNKVCLPGWTGPNC 63 (63)
T ss_dssp EEEE-SS--EEE-TTEESTTS
T ss_pred CcccCCCCCCCCCCCCcCCCC
Confidence 446888899999999999876
No 41
>cd00054 EGF_CA Calcium-binding EGF-like domain, present in a large number of membrane-bound and extracellular (mostly animal) proteins. Many of these proteins require calcium for their biological function and calcium-binding sites have been found to be located at the N-terminus of particular EGF-like domains; calcium-binding may be crucial for numerous protein-protein interactions. Six conserved core cysteines form three disulfide bridges as in non calcium-binding EGF domains, whose structures are very similar. EGF_CA can be found in tandem repeat arrangements.
Probab=91.97 E-value=0.27 Score=26.65 Aligned_cols=20 Identities=40% Similarity=1.017 Sum_probs=14.1
Q ss_pred ccCC--CceeecCCCCccCCCc
Q psy15475 85 CDQL--TGQCSCKPHVVGTNCD 104 (204)
Q Consensus 85 C~~~--~g~C~C~~g~~G~~C~ 104 (204)
|... ...|.|+++|.|.+|+
T Consensus 17 C~~~~~~~~C~C~~g~~g~~C~ 38 (38)
T cd00054 17 CVNTVGSYRCSCPPGYTGRNCE 38 (38)
T ss_pred eECCCCCeEeECCCCCcCCcCC
Confidence 6443 3478899999887764
No 42
>PF01414 DSL: Delta serrate ligand; InterPro: IPR001774 Ligands of the Delta/Serrate/lag-2 (DSL) family and their receptors, members of the lin-12/Notch family, mediate cell-cell interactions that specify cell fate in invertebrates and vertebrates. In Caenorhabditis elegans, two DSL genes, lag-2 and apx-1, influence different cell fate decisions during development []. Molecular interaction between Notch and Serrate, another EGF-homologous transmembrane protein containing a region of striking similarity to Delta, has been shown and the same two EGF repeats of Notch may also constitute a Serrate binding domain [, ].; GO: 0007154 cell communication, 0016020 membrane; PDB: 2VJ2_A.
Probab=90.71 E-value=0.048 Score=34.55 Aligned_cols=21 Identities=48% Similarity=1.066 Sum_probs=13.6
Q ss_pred CCcccCCCCeeecCCCCccCCC
Q psy15475 131 NRTCDPITGQCLCRPGVTGTRC 152 (204)
Q Consensus 131 ~~~C~~~~g~C~C~~g~~G~~C 152 (204)
+-+|+. .|+-.|.+||+|+.|
T Consensus 43 hy~Cd~-~G~~~C~~Gw~G~~C 63 (63)
T PF01414_consen 43 HYTCDS-NGNKVCLPGWTGPNC 63 (63)
T ss_dssp EEEE-S-S--EEE-TTEESTTS
T ss_pred CcccCC-CCCCCCCCCCcCCCC
Confidence 456874 788899999999876
No 43
>smart00179 EGF_CA Calcium-binding EGF-like domain.
Probab=89.74 E-value=0.42 Score=26.25 Aligned_cols=32 Identities=25% Similarity=0.472 Sum_probs=15.4
Q ss_pred ccccC-CCCCCCCCccCCCC--ccccCCCCcC-CCCC
Q psy15475 14 LLCVG-PPSDILKSVAGTTG--DCLKCIYNTG-GPQC 46 (204)
Q Consensus 14 ~~c~~-~~~~~~~~C~~~~g--~C~~C~~~~~-G~~C 46 (204)
..|.- .++.+++.|....+ .|. |+.+|. |..|
T Consensus 3 ~~C~~~~~C~~~~~C~~~~g~~~C~-C~~g~~~g~~C 38 (39)
T smart00179 3 DECASGNPCQNGGTCVNTVGSYRCE-CPPGYTDGRNC 38 (39)
T ss_pred ccCcCCCCcCCCCEeECCCCCeEeE-CCCCCccCCcC
Confidence 34444 45655556644332 253 555554 4444
No 44
>cd00053 EGF Epidermal growth factor domain, found in epidermal growth factor (EGF) presents in a large number of proteins, mostly animal; the list of proteins currently known to contain one or more copies of an EGF-like pattern is large and varied; the functional significance of EGF-like domains in what appear to be unrelated proteins is not yet clear; a common feature is that these repeats are found in the extracellular domain of membrane-bound proteins or in proteins known to be secreted (exception: prostaglandin G/H synthase); the domain includes six cysteine residues which have been shown to be involved in disulfide bonds; the main structure is a two-stranded beta-sheet followed by a loop to a C-terminal short two-stranded sheet; Subdomains between the conserved cysteines vary in length; the region between the 5th and 6th cysteine contains two conserved glycines of which at least one is present in most EGF-like domains; a subset of these bind calcium.
Probab=85.65 E-value=1.3 Score=23.34 Aligned_cols=19 Identities=32% Similarity=0.920 Sum_probs=12.6
Q ss_pred ccCC--CceeecCCCCccC-CC
Q psy15475 85 CDQL--TGQCSCKPHVVGT-NC 103 (204)
Q Consensus 85 C~~~--~g~C~C~~g~~G~-~C 103 (204)
|... ...|.|+.+|.|. .|
T Consensus 14 C~~~~~~~~C~C~~g~~g~~~C 35 (36)
T cd00053 14 CVNTPGSYRCVCPPGYTGDRSC 35 (36)
T ss_pred EecCCCCeEeECCCCCcccCCc
Confidence 5433 4578888888877 54
No 45
>smart00181 EGF Epidermal growth factor-like domain.
Probab=84.09 E-value=1.6 Score=23.35 Aligned_cols=19 Identities=37% Similarity=0.926 Sum_probs=13.2
Q ss_pred ccCC--CceeecCCCCcc-CCC
Q psy15475 85 CDQL--TGQCSCKPHVVG-TNC 103 (204)
Q Consensus 85 C~~~--~g~C~C~~g~~G-~~C 103 (204)
|.+. ...|.|+++|.| ..|
T Consensus 13 C~~~~~~~~C~C~~g~~g~~~C 34 (35)
T smart00181 13 CINTPGSYTCSCPPGYTGDKRC 34 (35)
T ss_pred EECCCCCeEeECCCCCccCCcc
Confidence 6443 457889999888 655
No 46
>KOG0196|consensus
Probab=83.82 E-value=1.8 Score=40.65 Aligned_cols=55 Identities=29% Similarity=0.664 Sum_probs=36.8
Q ss_pred CceeecCCCCc----cCCCcccCCCccccCCC-CCCccCCCCCCCCCCCcccCCCCeeecCCCCc
Q psy15475 89 TGQCSCKPHVV----GTNCDQCEVGHYNIISG-EGCKSCDCDPVGSLNRTCDPITGQCLCRPGVT 148 (204)
Q Consensus 89 ~g~C~C~~g~~----G~~C~~C~~G~~g~~~~-~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~ 148 (204)
.|.|.|.+||. |..|+.|++|+|....+ ..|.+|+-+.... ....-.|.|..||.
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s~-----~ega~~C~C~~gyy 317 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHSS-----SEGATSCTCENGYY 317 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCCC-----CCCCCcccccCCcc
Confidence 57899999984 68899999999976553 4577766432111 11233577777764
No 47
>KOG0196|consensus
Probab=82.84 E-value=1.9 Score=40.60 Aligned_cols=54 Identities=26% Similarity=0.619 Sum_probs=37.0
Q ss_pred CCeeecCCCC----ccCCCCCCCCCcccCCC--CCCccccCCCCCCCCCCCCCCCcccCCCCCC
Q psy15475 138 TGQCLCRPGV----TGTRCELCQPNHYGFSL--DGCKPCMCDPIGSNSLQCDPSGQCPGVFMNR 195 (204)
Q Consensus 138 ~g~C~C~~g~----~G~~C~~C~~g~~g~~~--~~c~~C~C~~~g~~~~~C~~~g~C~c~~~~~ 195 (204)
.|.|.|++|| .|..|+.|++|+|.... ..|.+|+-.... .=...-.|.|..||.
T Consensus 258 iG~C~C~aGye~~~~~~~C~aCp~G~yK~~~~~~~C~~CP~~S~s----~~ega~~C~C~~gyy 317 (996)
T KOG0196|consen 258 IGGCVCKAGYEEAENGKACQACPPGTYKASQGDSLCLPCPPNSHS----SSEGATSCTCENGYY 317 (996)
T ss_pred cCceeecCCCCcccCCCcceeCCCCcccCCCCCCCCCCCCCCCCC----CCCCCCcccccCCcc
Confidence 5789999998 46889999999998764 347777654321 011245677776653
No 48
>PHA02887 EGF-like protein; Provisional
Probab=60.23 E-value=5.5 Score=28.33 Aligned_cols=16 Identities=44% Similarity=1.080 Sum_probs=13.7
Q ss_pred CeeecCCCCccCCCCC
Q psy15475 139 GQCLCRPGVTGTRCEL 154 (204)
Q Consensus 139 g~C~C~~g~~G~~C~~ 154 (204)
-.|.|.+||+|.+|+.
T Consensus 108 psCrC~~GYtG~RCE~ 123 (126)
T PHA02887 108 KFCICNKGYTGIRCDE 123 (126)
T ss_pred ceeECCCCcccCCCCc
Confidence 4699999999999974
No 49
>PF12947 EGF_3: EGF domain; InterPro: IPR024731 This entry represents an EGF domain found in the the C terminus of malarial parasite merozoite surface protein 1 [], as well as other proteins.; PDB: 2NPR_A 1N1I_C 1B9W_A 1YO8_A 2RHP_A.
Probab=51.14 E-value=6.2 Score=21.80 Aligned_cols=17 Identities=35% Similarity=0.899 Sum_probs=10.2
Q ss_pred ccCC--CceeecCCCCccC
Q psy15475 85 CDQL--TGQCSCKPHVVGT 101 (204)
Q Consensus 85 C~~~--~g~C~C~~g~~G~ 101 (204)
|.+. ...|.|++||.|+
T Consensus 14 C~~~~~~~~C~C~~Gy~Gd 32 (36)
T PF12947_consen 14 CTNTGGSYTCTCKPGYEGD 32 (36)
T ss_dssp EEE-TTSEEEEE-CEEECC
T ss_pred eecCCCCEEeECCCCCccC
Confidence 6543 4578888888773
No 50
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=49.64 E-value=73 Score=21.57 Aligned_cols=26 Identities=27% Similarity=0.770 Sum_probs=14.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCcCCC
Q psy15475 43 GPQCDTCLPGYFGDALALPKGDCEPCQ 69 (204)
Q Consensus 43 G~~C~~C~~g~~g~~c~~~~~~C~~c~ 69 (204)
...|..|++|+|-...... ..|+++.
T Consensus 32 ~t~C~~C~~g~ys~~~~~~-~~C~~c~ 57 (98)
T cd00185 32 DTVCEPCPPGTYTDSWNHL-PKCLSCR 57 (98)
T ss_pred CCeecCCCCCCcccCCCCC-CcCCcCc
Confidence 3457778888776544321 2355543
No 51
>PF07645 EGF_CA: Calcium-binding EGF domain; InterPro: IPR001881 A sequence of about forty amino-acid residues found in epidermal growth factor (EGF) has been shown [, , , , , ] to be present in a large number of membrane-bound and extracellular, mostly animal, proteins. Many of these proteins require calcium for their biological function and a calcium-binding site has been found at the N terminus of some EGF-like domains []. Calcium-binding may be crucial for numerous protein-protein interactions. For human coagulation factor IX it has been shown [] that the calcium-ligands form a pentagonal bipyramid. The first, third and fourth conserved negatively charged or polar residues are side chain ligands. The latter is possibly hydroxylated (see aspartic acid and asparagine hydroxylation site) []. A conserved aromatic residue, as well as the second conserved negative residue, are thought to be involved in stabilising the calcium-binding site. As in non-calcium binding EGF-like domains, there are six conserved cysteines and the structure of both types is very similar as calcium-binding induces only strictly local structural changes []. +------------------+ +---------+ | | | | nxnnC-x(3,14)-C-x(3,7)-CxxbxxxxaxC-x(1,6)-C-x(8,13)-Cx | | +------------------+ 'n': negatively charged or polar residue [DEQN] 'b': possibly beta-hydroxylated residue [DN] 'a': aromatic amino acid 'C': cysteine, involved in disulphide bond 'x': any amino acid. ; GO: 0005509 calcium ion binding; PDB: 2VJ3_A 1TOZ_A 1LMJ_A 1UZQ_A 1UZK_A 1UZJ_B 1UZP_A 1EMO_A 1EMN_A 2RR0_A ....
Probab=48.68 E-value=9.7 Score=21.52 Aligned_cols=15 Identities=33% Similarity=0.709 Sum_probs=10.0
Q ss_pred ccCCC--ceeecCCCCc
Q psy15475 85 CDQLT--GQCSCKPHVV 99 (204)
Q Consensus 85 C~~~~--g~C~C~~g~~ 99 (204)
|.+.. +.|.|++||.
T Consensus 18 C~N~~Gsy~C~C~~Gy~ 34 (42)
T PF07645_consen 18 CVNTEGSYSCSCPPGYE 34 (42)
T ss_dssp EEEETTEEEEEESTTEE
T ss_pred EEcCCCCEEeeCCCCcE
Confidence 75543 4788877775
No 52
>PHA03099 epidermal growth factor-like protein (EGF-like protein); Provisional
Probab=44.39 E-value=13 Score=26.89 Aligned_cols=17 Identities=41% Similarity=0.847 Sum_probs=14.6
Q ss_pred CCeeecCCCCccCCCCC
Q psy15475 138 TGQCLCRPGVTGTRCEL 154 (204)
Q Consensus 138 ~g~C~C~~g~~G~~C~~ 154 (204)
...|.|..||+|.|||.
T Consensus 66 ~~~CrC~~GYtGeRCEh 82 (139)
T PHA03099 66 GMYCRCSHGYTGIRCQH 82 (139)
T ss_pred CceeECCCCcccccccc
Confidence 34699999999999986
No 53
>PHA02714 CD-30-like protein; Provisional
Probab=42.88 E-value=27 Score=23.98 Aligned_cols=16 Identities=13% Similarity=0.133 Sum_probs=8.2
Q ss_pred CCCCC--CCCcccCCCCC
Q psy15475 179 SLQCD--PSGQCPGVFMN 194 (204)
Q Consensus 179 ~~~C~--~~g~C~c~~~~ 194 (204)
-..|. .+-+|.|++|-
T Consensus 50 ktPC~~ns~RvCeCkpGm 67 (110)
T PHA02714 50 KQSCGPDKPRKCQCGPGL 67 (110)
T ss_pred eccCCCCCCceecCCCCC
Confidence 34455 34556665553
No 54
>PF12662 cEGF: Complement Clr-like EGF-like
Probab=40.39 E-value=17 Score=18.20 Aligned_cols=10 Identities=40% Similarity=0.969 Sum_probs=6.9
Q ss_pred CeeecCCCCc
Q psy15475 139 GQCLCRPGVT 148 (204)
Q Consensus 139 g~C~C~~g~~ 148 (204)
..|.|++||.
T Consensus 2 y~C~C~~Gy~ 11 (24)
T PF12662_consen 2 YTCSCPPGYQ 11 (24)
T ss_pred EEeeCCCCCc
Confidence 4577777775
No 55
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=38.71 E-value=28 Score=20.24 Aligned_cols=11 Identities=27% Similarity=0.945 Sum_probs=5.5
Q ss_pred CCCCCCCCccc
Q psy15475 151 RCELCQPNHYG 161 (204)
Q Consensus 151 ~C~~C~~g~~g 161 (204)
.|..|+.|+|.
T Consensus 10 ~C~~Cp~GtYq 20 (48)
T PF07699_consen 10 KCQPCPKGTYQ 20 (48)
T ss_pred ccCCCCCCccC
Confidence 34455555554
No 56
>PF09064 Tme5_EGF_like: Thrombomodulin like fifth domain, EGF-like; InterPro: IPR015149 This domain adopts a fold similar to other EGF domains, with a flat major and a twisted minor beta sheet. Disulphide pairing, however, is not of the usual 1-3, 2-4, 5-6 type; rather 1-2, 3-4, 5-6 pairing is found. Its extended major sheet (strands beta-2 and beta-3 and the connecting loop) projects into thrombin's active site groove. This domain is required for interaction of thrombomodulin with thrombin, and subsequent activation of protein-C []. ; GO: 0004888 transmembrane signaling receptor activity, 0016021 integral to membrane
Probab=34.51 E-value=39 Score=18.49 Aligned_cols=16 Identities=50% Similarity=1.246 Sum_probs=10.7
Q ss_pred cccC-CCCeeecCCCCc
Q psy15475 133 TCDP-ITGQCLCRPGVT 148 (204)
Q Consensus 133 ~C~~-~~g~C~C~~g~~ 148 (204)
.|++ ..++|.|+.||.
T Consensus 11 ~CDpn~~~~C~CPeGyI 27 (34)
T PF09064_consen 11 DCDPNSPGQCFCPEGYI 27 (34)
T ss_pred ccCCCCCCceeCCCceE
Confidence 4554 345789988874
No 57
>PTZ00214 high cysteine membrane protein Group 4; Provisional
Probab=33.89 E-value=3.4e+02 Score=26.14 Aligned_cols=51 Identities=18% Similarity=0.511 Sum_probs=26.2
Q ss_pred CCCcccCCCccccCCCCCCccCCCCCCCCCCCcccCCCCeeecCCCCc----cCCCC
Q psy15475 101 TNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVT----GTRCE 153 (204)
Q Consensus 101 ~~C~~C~~G~~g~~~~~~C~~c~C~~~g~~~~~C~~~~g~C~C~~g~~----G~~C~ 153 (204)
..|..|..+||-....+.|.. .|.... ..+.......+|.|..||. +..|.
T Consensus 646 ~~C~~C~~~~~ls~~~~~C~~-~C~~~~-~~~~~~~~~~~C~C~~g~~p~~~~~~C~ 700 (800)
T PTZ00214 646 SFCTECAGELFVSLDGQSCLE-ECTGDK-VVGEVSGGVRRCWCERGFLPALDRSGCV 700 (800)
T ss_pred CCcCcCCCCceecCcCCchhh-cCCCcc-ccccccCCcceeEecCCcccccCCCccc
Confidence 468888888885444555542 222111 0111111134688888775 45564
No 58
>KOG3607|consensus
Probab=24.80 E-value=64 Score=30.46 Aligned_cols=29 Identities=28% Similarity=0.655 Sum_probs=22.9
Q ss_pred CCCCCCCCccCCCCCCCcccCCCceeecCCCCccCCCcc
Q psy15475 67 PCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQ 105 (204)
Q Consensus 67 ~c~C~~~g~~~~~~~~~~C~~~~g~C~C~~g~~G~~C~~ 105 (204)
+..|+++|. |++ ...|.|.++|++..|+.
T Consensus 629 ~~~C~g~GV---------Cnn-~~~ChC~~gwapp~C~~ 657 (716)
T KOG3607|consen 629 PTTCNGHGV---------CNN-ELNCHCEPGWAPPFCFI 657 (716)
T ss_pred ccccCCCcc---------cCC-CcceeeCCCCCCCcccc
Confidence 334666666 765 67999999999999986
Done!