RPS-BLAST 2.2.26 [Sep-21-2011]

Database: CDD.v3.10 
           44,354 sequences; 10,937,602 total letters

Searching..................................................done

Query= psy15475
         (204 letters)



>gnl|CDD|215680 pfam00053, Laminin_EGF, Laminin EGF-like (Domains III and V).  This
           family is like pfam00008 but has 8 conserved cysteines
           instead of six.
          Length = 49

 Score = 60.4 bits (147), Expect = 6e-13
 Identities = 29/49 (59%), Positives = 36/49 (73%)

Query: 122 CDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPC 170
           CDC+P GSL+ TCDP TGQCLC+PGVTG  C+ C+P +YG   D  + C
Sbjct: 1   CDCNPHGSLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPGQGC 49



 Score = 40.4 bits (95), Expect = 2e-05
 Identities = 18/39 (46%), Positives = 25/39 (64%)

Query: 80  TFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEG 118
           + +  CD  TGQC CKP V G +CD+C+ G+Y + S  G
Sbjct: 8   SLSDTCDPETGQCLCKPGVTGRHCDRCKPGYYGLPSDPG 46



 Score = 30.0 bits (68), Expect = 0.095
 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 1/33 (3%)

Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALALPKG 63
          TG CL C     G  CD C PGY+G      +G
Sbjct: 17 TGQCL-CKPGVTGRHCDRCKPGYYGLPSDPGQG 48


>gnl|CDD|214543 smart00180, EGF_Lam, Laminin-type epidermal growth factor-like
           domai. 
          Length = 46

 Score = 60.4 bits (147), Expect = 7e-13
 Identities = 28/46 (60%), Positives = 32/46 (69%)

Query: 122 CDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGC 167
           CDCDP GS + TCDP TGQC C+P VTG RC+ C P +YG    GC
Sbjct: 1   CDCDPGGSASGTCDPDTGQCECKPNVTGRRCDRCAPGYYGDGPPGC 46



 Score = 43.8 bits (104), Expect = 1e-06
 Identities = 21/52 (40%), Positives = 26/52 (50%), Gaps = 6/52 (11%)

Query: 68  CQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGC 119
           C C   G+      +  CD  TGQC CKP+V G  CD+C  G+Y      GC
Sbjct: 1   CDCDPGGS-----ASGTCDPDTGQCECKPNVTGRRCDRCAPGYYG-DGPPGC 46



 Score = 28.0 bits (63), Expect = 0.49
 Identities = 14/26 (53%), Positives = 16/26 (61%), Gaps = 1/26 (3%)

Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGD 56
          TG C  C  N  G +CD C PGY+GD
Sbjct: 17 TGQCE-CKPNVTGRRCDRCAPGYYGD 41


>gnl|CDD|238012 cd00055, EGF_Lam, Laminin-type epidermal growth factor-like domain;
           laminins are the major noncollagenous components of
           basement membranes that mediate cell adhesion, growth
           migration, and differentiation; the laminin-type
           epidermal growth factor-like module occurs in tandem
           arrays; the domain contains 4 disulfide bonds (loops
           a-d) the first three resemble epidermal growth factor
           (EGF); the number of copies of this domain in the
           different forms of laminins is highly variable ranging
           from 3 up to 22 copies.
          Length = 50

 Score = 59.3 bits (144), Expect = 2e-12
 Identities = 24/46 (52%), Positives = 29/46 (63%)

Query: 121 SCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDG 166
            CDC+  GSL+  CDP TGQC C+P  TG RC+ C P +YG    G
Sbjct: 1   PCDCNGHGSLSGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQG 46



 Score = 45.0 bits (107), Expect = 3e-07
 Identities = 23/55 (41%), Positives = 30/55 (54%), Gaps = 6/55 (10%)

Query: 67  PCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNI-ISGEGCK 120
           PC C   G+L     +  CD  TGQC CKP+  G  CD+C  G+Y +   G GC+
Sbjct: 1   PCDCNGHGSL-----SGQCDPGTGQCECKPNTTGRRCDRCAPGYYGLPSQGGGCQ 50



 Score = 29.6 bits (67), Expect = 0.16
 Identities = 14/29 (48%), Positives = 16/29 (55%), Gaps = 1/29 (3%)

Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALA 59
          TG C  C  NT G +CD C PGY+G    
Sbjct: 18 TGQCE-CKPNTTGRRCDRCAPGYYGLPSQ 45



 Score = 24.6 bits (54), Expect = 8.0
 Identities = 13/22 (59%), Positives = 15/22 (68%), Gaps = 1/22 (4%)

Query: 169 PCMCDPIGSNSLQCDP-SGQCP 189
           PC C+  GS S QCDP +GQC 
Sbjct: 1   PCDCNGHGSLSGQCDPGTGQCE 22


>gnl|CDD|218628 pfam05541, Spheroidin, Entomopoxvirus spheroidin protein.
           Entomopoxviruses (EPVs) are large (300-400 nm)
           oval-shaped viruses replicating in the cytoplasm of
           their insect host cells. At the end of their replicative
           cycle EPVs virions are occluded in a highly expressed
           protein called spheroidin. This protein forms large
           (5-20 mm long) oval-shaped occlusion bodies (OBs) called
           spherules. The infectious cycle of EPVs begins with the
           ingestion by the insect host of the spherules, their
           dissolution by the alkaline reducing conditions of the
           midgut fluid and the release of virions in the midgut
           lumen. The infective particles first replicate in midgut
           epithelial cells, then pass the gut barrier to colonise
           the internal tissues, mainly the fat body cells. Whilst
           spheroidin has been demonstrated to be non-essential for
           viral replication, it plays an essential role in the
           natural biological cycle of the virus in protecting
           virions from adverse environmental conditions (e.g. UV
           degradation) and thus improving transmission efficacy.
           In this respect, spheroidins are functionally similar to
           polyhedrins of baculoviruses or cypoviruses.
          Length = 943

 Score = 31.8 bits (72), Expect = 0.25
 Identities = 21/94 (22%), Positives = 29/94 (30%), Gaps = 7/94 (7%)

Query: 111 YNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPC 170
             +I   G +  D   +G +  T D +   C  R      R  L  P    +      P 
Sbjct: 843 CELIKKYGYRIMDLHKIGRIFSTYDDVPSPCEERCHYLEDRGLLILPEPVPWPY----PE 898

Query: 171 MCDPIGSNSLQCDPSGQCPGVFMNRAEMSSDDVR 204
            C P   N L C     C  +F N        V+
Sbjct: 899 NCCP---NDLGCVCVNPCRHLFFNECPKGCTCVK 929


>gnl|CDD|240241 PTZ00045, PTZ00045, apical membrane antigen 1; Provisional.
          Length = 595

 Score = 28.4 bits (63), Expect = 2.7
 Identities = 21/117 (17%), Positives = 32/117 (27%), Gaps = 11/117 (9%)

Query: 36  KCIYNTGGPQCDTCLPGYFG-DALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSC 94
           KC      P C     GY+   AL+ P        C I   +         D+ +  C  
Sbjct: 405 KCEIFDVVPTCLISDSGYYALTALSSPNEVDANFPCSIKEKIVLPRIFISTDKDSPFCPA 464

Query: 95  KP-HVVGTNCD---------QCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQC 141
            P  V  + C           C V   N +  +    C  + +    +    I    
Sbjct: 465 TPLKVSNSTCSFYVCERVEKSCGVKENNEVVVKEEFKCTYENILEDKKKRILIIIIA 521


>gnl|CDD|223588 COG0514, RecQ, Superfamily II DNA helicase [DNA replication,
           recombination, and repair].
          Length = 590

 Score = 28.0 bits (63), Expect = 4.3
 Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 15/96 (15%)

Query: 50  LPGYFGDALALPKGDCEPCQCYIPGTLETETFTP------VCDQLTGQCSCKPHVV---- 99
           L  YFG+    P G+C+ C      T +    T        C    GQ     +V+    
Sbjct: 380 LLKYFGEDEPEPCGNCDNC----LDTPKQFDGTIEAQKVLSCIYRMGQRFGVGYVIDVLR 435

Query: 100 GTNCDQCEVGHYNIISGEG-CKSCDCDPVGSLNRTC 134
           G+   +  +  +  +S  G  K       GSL R  
Sbjct: 436 GSKNLKIRLLGHEKLSTYGIGKDLSKKTWGSLIRQL 471


  Database: CDD.v3.10
    Posted date:  Mar 20, 2013  7:55 AM
  Number of letters in database: 10,937,602
  Number of sequences in database:  44,354
  
Lambda     K      H
   0.322    0.142    0.494 

Gapped
Lambda     K      H
   0.267   0.0612    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 9,514,439
Number of extensions: 788647
Number of successful extensions: 549
Number of sequences better than 10.0: 1
Number of HSP's gapped: 538
Number of HSP's successfully gapped: 51
Length of query: 204
Length of database: 10,937,602
Length adjustment: 92
Effective length of query: 112
Effective length of database: 6,857,034
Effective search space: 767987808
Effective search space used: 767987808
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.0 bits)