RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy15475
(204 letters)
>4aqs_A Laminin subunit beta-1; cell adhesion; HET: NAG BMA MAN FUL; 3.11A
{Mus musculus}
Length = 525
Score = 119 bits (300), Expect = 7e-32
Identities = 68/173 (39%), Positives = 88/173 (50%), Gaps = 13/173 (7%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGD--CEPCQCYIPGTL----ETETFTP 83
+ G C C +NT G C+ C P YF + CEPC C G+
Sbjct: 341 SGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPCTCDPAGSENGGICDGYTDF 400
Query: 84 VCDQLTGQCSCKPHVVGTNCDQCEVGHYNIIS--GEGCKSCDCDPVGSLNR--TCDPITG 139
+ GQC CK HV G CD C+ G Y++ + GCKSC C+P+G++ CD TG
Sbjct: 401 SVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSCACNPLGTIPGGNPCDSETG 460
Query: 140 QCLCRPGVTGTRCELCQPNHYGFS--LDGCKPCMCDPIGSNSLQCDP-SGQCP 189
C C+ VTG RC+ C P H+G S LDGC+PC CD G+ + C SGQC
Sbjct: 461 YCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCS 513
Score = 103 bits (257), Expect = 5e-26
Identities = 45/126 (35%), Positives = 63/126 (50%), Gaps = 5/126 (3%)
Query: 29 GTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQL 88
G +C + G +CD C G++ + P G C+ C C GT+ CD
Sbjct: 403 GLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYG-CKSCACNPLGTIPG---GNPCDSE 458
Query: 89 TGQCSCKPHVVGTNCDQCEVGHYNIISG-EGCKSCDCDPVGSLNRTCDPITGQCLCRPGV 147
TG C CK V G CDQC H+ + + +GC+ CDCD G+LN +C +GQC C P +
Sbjct: 459 TGYCYCKRLVTGQRCDQCLPQHWGLSNDLDGCRPCDCDLGGALNNSCSEDSGQCSCLPHM 518
Query: 148 TGTRCE 153
G +C
Sbjct: 519 IGRQCN 524
Score = 84.4 bits (208), Expect = 2e-19
Identities = 55/202 (27%), Positives = 80/202 (39%), Gaps = 29/202 (14%)
Query: 16 CVGPPSDILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGD----ALALPKGDCEPCQCY 71
C + G C C +NT G C+ C+ Y A C+ C C
Sbjct: 263 CAPVDGVNEEVEGMVHGHC-MCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCN 321
Query: 72 IPGT---LETETFTPVCDQLTGQC-SCKPHVVGTNCDQCEVGHYN-----IISGEGCKSC 122
+ + F + G C +C+ + +G NC+QC+ ++ I C+ C
Sbjct: 322 EHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPERDIRDPNLCEPC 381
Query: 123 DCDPVGSLNRT---------CDPITGQCLCRPGVTGTRCELCQPNHYGFS---LDGCKPC 170
CDP GS N I GQC C+ V G RC++C+ Y S GCK C
Sbjct: 382 TCDPAGSENGGICDGYTDFSVGLIAGQCRCKLHVEGERCDVCKEGFYDLSAEDPYGCKSC 441
Query: 171 MCDPIGS--NSLQCDP-SGQCP 189
C+P+G+ CD +G C
Sbjct: 442 ACNPLGTIPGGNPCDSETGYCY 463
Score = 57.8 bits (139), Expect = 3e-10
Identities = 28/76 (36%), Positives = 39/76 (51%), Gaps = 8/76 (10%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLT 89
TG C C G +CD CLP ++G L+ C PC C + G L C + +
Sbjct: 458 ETGYCY-CKRLVTGQRCDQCLPQHWG--LSNDLDGCRPCDCDLGGAL-----NNSCSEDS 509
Query: 90 GQCSCKPHVVGTNCDQ 105
GQCSC PH++G C++
Sbjct: 510 GQCSCLPHMIGRQCNE 525
Score = 46.2 bits (109), Expect = 2e-06
Identities = 26/132 (19%), Positives = 43/132 (32%), Gaps = 7/132 (5%)
Query: 65 CEPCQCYIPG---TLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNI----ISGE 117
C CY V + G C C+ + G NC+ C ++++ G
Sbjct: 251 RGNCFCYGHASECAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGR 310
Query: 118 GCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGS 177
+C + +C L V+G C+ CQ N G + + CKP
Sbjct: 311 NSNACKKCNCNEHSSSCHFDMAVFLATGNVSGGVCDNCQHNTMGRNCEQCKPFYFQHPER 370
Query: 178 NSLQCDPSGQCP 189
+ + C
Sbjct: 371 DIRDPNLCEPCT 382
Score = 36.6 bits (84), Expect = 0.004
Identities = 23/134 (17%), Positives = 42/134 (31%), Gaps = 19/134 (14%)
Query: 71 YIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDP---- 126
Y P T + + + +++ + + E +Y + +C C
Sbjct: 203 YSPRIQNLLKITNLRIKFVKLHTLGDNLLDSRMEIREKYYYAVYDMVVRGNCFCYGHASE 262
Query: 127 ----VGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYG--------FSLDGCKPCMCDP 174
G + G C+CR G CELC ++ + + CK C C+
Sbjct: 263 CAPVDGVNEEVEGMVHGHCMCRHNTKGLNCELCMDFYHDLPWRPAEGRNSNACKKCNCNE 322
Query: 175 IGSNSLQCDPSGQC 188
+S C
Sbjct: 323 ---HSSSCHFDMAV 333
>1klo_A Laminin; glycoprotein; 2.10A {Mus musculus} SCOP: g.3.11.2 g.3.11.2
g.3.11.2 PDB: 1npe_B 1tle_A
Length = 162
Score = 98.0 bits (244), Expect = 3e-26
Identities = 50/149 (33%), Positives = 71/149 (47%), Gaps = 14/149 (9%)
Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALAL--PKGDCEPCQCYIPGTLETETFTPVCDQL 88
C C T G +C+ C GYFGD L P C PCQC C++L
Sbjct: 17 EVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDP---NAVGNCNRL 73
Query: 89 TGQC-SCKPHVVGTNCDQCEVGHYN----IISGEGCKSCDCDPVGSLNR--TCDPITGQC 141
TG+C C + G CD+C+ G + + CK+C C+P G++ + +C+P+TGQC
Sbjct: 74 TGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQC 133
Query: 142 LCRPGVTGTRCELCQPNHYGFSLDGCKPC 170
C P V+G C C P +Y + C
Sbjct: 134 QCLPHVSGRDCGTCDPGYYNL--QSGQGC 160
Score = 85.2 bits (211), Expect = 3e-21
Identities = 44/92 (47%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALA-LPKGDCEPCQCYIPGTLETETFTPVCDQL 88
TG+CLKCIYNT G CD C G+FG+ LA P C+ C C GT++ ++ C+ +
Sbjct: 73 LTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQS---SCNPV 129
Query: 89 TGQCSCKPHVVGTNCDQCEVGHYNIISGEGCK 120
TGQC C PHV G +C C+ G+YN+ SG+GC+
Sbjct: 130 TGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 161
Score = 66.4 bits (162), Expect = 3e-14
Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 16/115 (13%)
Query: 91 QCSCKPHVVGTNCDQCEVGHY-----NIISGEGCKSCDCDPVGSLNR--TCDPITGQCL- 142
C G C+ C+ G++ + C+ C C+ N C+ +TG+CL
Sbjct: 20 CTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLCRPCQCNDNIDPNAVGNCNRLTGECLK 79
Query: 143 CRPGVTGTRCELCQPNHYGFSL-----DGCKPCMCDPIGSNSLQ--CDP-SGQCP 189
C G C+ C+ +G L D CK C C+P G+ Q C+P +GQC
Sbjct: 80 CIYNTAGFYCDRCKEGFFGNPLAPNPADKCKACACNPYGTVQQQSSCNPVTGQCQ 134
>1skz_A Antistasin; factor XA inhibitor, serine protease inhibitor,
thrombosis; 1.90A {Haementeria officinalis} SCOP:
g.3.15.1 g.3.15.1
Length = 119
Score = 67.0 bits (163), Expect = 7e-15
Identities = 25/122 (20%), Positives = 34/122 (27%), Gaps = 18/122 (14%)
Query: 64 DCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISG------- 116
D C G E C+ +T +C+C C G G
Sbjct: 2 DPFGPGCEEAGCPEGSA----CNIITDRCTCSGV---RCRVHCPHGFQRSRYGCEFCKCR 54
Query: 117 EGCKSCDCDPVGSLN-RTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPI 175
CD C +T +C C+ + C PN GC+ C C P
Sbjct: 55 LEPMKATCDISECPEGMMCSRLTNKCDCKIDIN---CRKTCPNGLKRDKLGCEYCECRPK 111
Query: 176 GS 177
Sbjct: 112 RK 113
Score = 45.8 bits (108), Expect = 6e-07
Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 12/93 (12%)
Query: 42 GGPQCDTCLPGYF----GDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPH 97
G C G+ G + + C I E +C +LT +C CK
Sbjct: 30 GVRCRVHCPHGFQRSRYGCEFCKCRLEPMKATCDISECPEGM----MCSRLTNKCDCKI- 84
Query: 98 VVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSL 130
NC + GC+ C+C P L
Sbjct: 85 --DINCRKTCPNGLKR-DKLGCEYCECRPKRKL 114
Score = 38.5 bits (89), Expect = 2e-04
Identities = 13/81 (16%), Positives = 21/81 (25%), Gaps = 8/81 (9%)
Query: 117 EGCKSCDCDPVGSLNRT-CDPITGQCLCRPGVTGTRCE-----LCQPNHYGFSLDGCKPC 170
E C+ G + C+ IT +C C C +
Sbjct: 1 EDPFGPGCEEAGCPEGSACNIITDRCTCSGVRCRVHCPHGFQRSRYGCEFCKCRLEPMKA 60
Query: 171 MCDPIGS-NSLQCDP-SGQCP 189
CD + C + +C
Sbjct: 61 TCDISECPEGMMCSRLTNKCD 81
>4aqt_A Laminin subunit gamma-1; cell adhesion; HET: NAG BMA; 3.20A {Mus
musculus}
Length = 375
Score = 66.7 bits (162), Expect = 2e-13
Identities = 25/108 (23%), Positives = 39/108 (36%), Gaps = 10/108 (9%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGD----ALALPKGDCEPCQCYIPGTLETETFTPVC 85
C +NT G C+ CLP + A A +C PC C G + F P
Sbjct: 269 FDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESASECLPCDC--NGRSQECYFDPEL 326
Query: 86 DQLTGQ----CSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGS 129
+ TG +C+ + G C++C + + + E C
Sbjct: 327 YRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSPAAAHHHHH 374
Score = 60.6 bits (146), Expect = 3e-11
Identities = 23/128 (17%), Positives = 37/128 (28%), Gaps = 20/128 (15%)
Query: 65 CEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEG------ 118
C+C + + C+CK + G +C++C +
Sbjct: 252 GGRCKCNGHASE-----CVKNEFDKLMCNCKHNTYGVDCEKCLPFFNDRPWRRATAESAS 306
Query: 119 -CKSCDCDPVGSLNR------TCDPITGQCL-CRPGVTGTRCELCQPNHYGFSL-DGCKP 169
C CDC+ G C CR G +CE C+ N + + C P
Sbjct: 307 ECLPCDCNGRSQECYFDPELYRSTGHGGHCTNCRDNTDGAKCERCRENFFRLGNTEACSP 366
Query: 170 CMCDPIGS 177
Sbjct: 367 AAAHHHHH 374
Score = 44.0 bits (103), Expect = 1e-05
Identities = 17/91 (18%), Positives = 24/91 (26%), Gaps = 8/91 (8%)
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTG 149
+ + V + +Y I C C+ S + C C+ G
Sbjct: 223 NRLNTFGDEVFNEPKVLKSYYYAISDFAVGGRCKCNGHASECVKNEFDKLMCNCKHNTYG 282
Query: 150 TRCELCQPNHYGFSLDG--------CKPCMC 172
CE C P C PC C
Sbjct: 283 VDCEKCLPFFNDRPWRRATAESASECLPCDC 313
Score = 40.1 bits (93), Expect = 2e-04
Identities = 12/43 (27%), Positives = 16/43 (37%), Gaps = 3/43 (6%)
Query: 29 GTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCY 71
G G C C NT G +C+ C +F C P +
Sbjct: 331 GHGGHCTNCRDNTDGAKCERCRENFFRLG---NTEACSPAAAH 370
>3zyj_B Netrin-G1; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo
sapiens}
Length = 426
Score = 58.3 bits (140), Expect = 2e-10
Identities = 28/130 (21%), Positives = 36/130 (27%), Gaps = 15/130 (11%)
Query: 27 VAGTTGDCLKCIYNTGGPQCDTCLPGYFGD----ALALPKGDCEPCQCYIPGTLETETFT 82
V + +C +NT GP C C Y G LP C + T
Sbjct: 307 VYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSIS---SIGT 363
Query: 83 PVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCL 142
VCD C C + G C+ C+ GS C +GQ
Sbjct: 364 NVCDNELLHCQNGGTCHNNVRCLCPAAYT----GILCEKLRCEEAGS----CGSDSGQGA 415
Query: 143 CRPGVTGTRC 152
G
Sbjct: 416 PPHGTHHHHH 425
Score = 50.2 bits (119), Expect = 1e-07
Identities = 23/116 (19%), Positives = 34/116 (29%), Gaps = 17/116 (14%)
Query: 84 VCDQLTGQCSCKPHVVGTNCDQCEVGHYN-------IISGEGCKSCDCDP--VGSLNRTC 134
V D C C+ + G +C +C+ + + + C P C
Sbjct: 307 VYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSYLPIPKGAANACIPSISSIGTNVC 366
Query: 135 DPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDP-SGQCP 189
D C LC + G C+ C+ GS C SGQ
Sbjct: 367 DNELLHCQNGGTCHNNVRCLCPAAYTG---ILCEKLRCEEAGS----CGSDSGQGA 415
Score = 37.9 bits (87), Expect = 0.002
Identities = 25/156 (16%), Positives = 38/156 (24%), Gaps = 18/156 (11%)
Query: 50 LPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVG 109
+ F + + T + F V D + +
Sbjct: 225 IKDRFAFFAGPRLRNMASLYGQLDTTKKLRDFFTVTDLRIRLLRPAVGEIFVDELHLARY 284
Query: 110 HYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGF------- 162
Y I + C C+ + D C C TG C C+ N+ G
Sbjct: 285 FYAISDIKVRGRCKCNLHAT-VCVYDNSKLTCECEHNTTGPDCGKCKKNYQGRPWSPGSY 343
Query: 163 -SLDGCKPCMCDPIGSN---------SLQCDPSGQC 188
+ C P S+ L C G C
Sbjct: 344 LPIPKGAANACIPSISSIGTNVCDNELLHCQNGGTC 379
>2y38_A Laminin subunit alpha-5; structural protein, cell adhesion,
basement membrane; HET: NAG; 2.90A {Mus musculus}
Length = 403
Score = 55.7 bits (133), Expect = 1e-09
Identities = 30/171 (17%), Positives = 42/171 (24%), Gaps = 34/171 (19%)
Query: 33 DCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQC 92
L + Y+ C C+ G + D QC
Sbjct: 234 TLLGHLMGKALRDPTVTRRYYYSIK---DISIGGRCVCH--GHADVCDAKDPLDPFRLQC 288
Query: 93 SCKPHVVGTNCDQCEVGHYN----------------IISGEGCKSCDCDP------VGSL 130
+C+ + G +CD+C G C DP
Sbjct: 289 ACQHNTCGGSCDRCCPGFNQQPWKPATTDSANECQSCNCHGHAYDCYYDPEVDRREASQN 348
Query: 131 NRTCDPITGQCL-CRPGVTGTRCELCQPNHYGF------SLDGCKPCMCDP 174
G CL C+ TG CE C P + S C+P
Sbjct: 349 QDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAAAHH 399
Score = 42.9 bits (100), Expect = 3e-05
Identities = 17/61 (27%), Positives = 23/61 (37%), Gaps = 2/61 (3%)
Query: 12 DILLCVGPPSDILKSVAGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALP--KGDCEPCQ 69
D + S +V G CL C ++T G C+ CLPG+F C P
Sbjct: 337 DPEVDRREASQNQDNVYQGGGVCLDCQHHTTGINCERCLPGFFRAPDQPLDSPHVCRPAA 396
Query: 70 C 70
Sbjct: 397 A 397
>2gy5_A Angiopoietin-1 receptor; ligand-binding domain, transferase; HET:
NAG NDG; 2.90A {Homo sapiens} PDB: 2gy7_B*
Length = 423
Score = 51.6 bits (123), Expect = 3e-08
Identities = 32/161 (19%), Positives = 43/161 (26%), Gaps = 25/161 (15%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLT 89
C +G C C VC + T
Sbjct: 170 RYIGGNLFTSAFTRLIVRRCEAQKWGPEC---NHLCTACMN-----------NGVCHEDT 215
Query: 90 GQCSCKPHVVGTNCDQ-CEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVT 148
G+C C P +G C++ CE+ + + C C P C C G
Sbjct: 216 GECICPPGFMGRTCEKACELHTFG---RTCKERCSGQEGCKSYVFCLPDPYGCSCATGWK 272
Query: 149 GTRCEL-CQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQC 188
G +C C P YG C +N CD C
Sbjct: 273 GLQCNEACHPGFYGPDCKLRCSC------NNGEMCDRFQGC 307
Score = 44.3 bits (104), Expect = 1e-05
Identities = 37/159 (23%), Positives = 49/159 (30%), Gaps = 22/159 (13%)
Query: 30 TTGDCLKCIYNTGGPQCDT-CLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQL 88
TG+C+ C G C+ C FG + E C C
Sbjct: 214 DTGECI-CPPGFMGRTCEKACELHTFG------RTCKERCSGQEGCKS-----YVFCLPD 261
Query: 89 TGQCSCKPHVVGTNCDQ-CEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGV 147
CSC G C++ C G Y + C C+ CD G CLC PG
Sbjct: 262 PYGCSCATGWKGLQCNEACHPGFYGP---DCKLRCSCNNGE----MCDRFQG-CLCSPGW 313
Query: 148 TGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSG 186
G +CE + + G + C SG
Sbjct: 314 QGLQCEREGIPRMTPKIVDLPDHIEVNSGKFNPICKASG 352
>3tbd_A Netrin-G2, laminet-2; laminin N-terminal domain, domain VI,
LE-domain, N neuronal cell adhesion molecule, netrin G
ligand 2, nervous system; HET: NAG; 1.80A {Homo sapiens}
PDB: 3zyg_A* 3zyi_B*
Length = 338
Score = 43.0 bits (100), Expect = 2e-05
Identities = 24/137 (17%), Positives = 33/137 (24%), Gaps = 21/137 (15%)
Query: 51 PGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGH 110
F + G E T T + +L +V N +
Sbjct: 202 FAIFAGPDLRNMDNLYTRLESAKGLKEFFTLTDLRMRLLRPALGGTYVQRENLYKYFYAI 261
Query: 111 YNIISGEGCKSCDCDPVGSLNRTCDPITGQ--CLCRPGVTGTRCELCQPNHYGF------ 162
NI E C C+ + C G C C TG C C+ N
Sbjct: 262 SNI---EVIGRCKCNLHAN---LCSMREGSLQCECEHNTTGPDCGKCKKNFRTRSWRAGS 315
Query: 163 -------SLDGCKPCMC 172
S + C
Sbjct: 316 YLPLPHGSPNACAAAGS 332
Score = 33.7 bits (76), Expect = 0.027
Identities = 8/47 (17%), Positives = 12/47 (25%), Gaps = 9/47 (19%)
Query: 34 CLKCIYNTGGPQCDTCLPGYFGD---------ALALPKGDCEPCQCY 71
+C +NT GP C C + C +
Sbjct: 287 QCECEHNTTGPDCGKCKKNFRTRSWRAGSYLPLPHGSPNACAAAGSH 333
>3fcs_B Integrin beta-3; beta propeller, rossmann fold, EGF domain, cell
adhesion, DI mutation, glycoprotein, HOST-virus
interaction, M phosphoprotein; HET: NAG MAN; 2.55A {Homo
sapiens} PDB: 3ije_B* 1jv2_B* 1l5g_B* 1m1x_B* 1u8c_B*
Length = 690
Score = 42.0 bits (98), Expect = 7e-05
Identities = 27/140 (19%), Positives = 43/140 (30%), Gaps = 5/140 (3%)
Query: 33 DCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETET-FTPVCDQLTGQ 91
+ + T P F D+L + C C + G
Sbjct: 400 EAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGNGTFECGV 459
Query: 92 CSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTR 151
C C P +G+ C+ C Y + C + PV S C + GQC+C G
Sbjct: 460 CRCGPGWLGSQCE-CSEEDYRPSQQDECSPREGQPVCSQRGEC--LCGQCVCHSSDFGKI 516
Query: 152 CE-LCQPNHYGFSLDGCKPC 170
C+ + + + C
Sbjct: 517 TGKYCECDDFSCVRYKGEMC 536
Score = 39.3 bits (91), Expect = 5e-04
Identities = 39/173 (22%), Positives = 53/173 (30%), Gaps = 23/173 (13%)
Query: 33 DCLKCIYNTGGPQCDTCL--PGYFGDALALPKGDCEP-CQCYIPGTLETETFTPVCDQLT 89
+ +C G +C C PG+ G + D P Q + + L
Sbjct: 444 NSHRCNNGNGTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECLC 503
Query: 90 GQCSCKPHVVGTNCDQ-CEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVT 148
GQC C G + CE ++ + K C G C G CLC T
Sbjct: 504 GQCVCHSSDFGKITGKYCECDDFSCVR---YKGEMCSGHG----QCS--CGDCLCDSDWT 554
Query: 149 GTRCELCQPNHYGFSLDG----------CKPCMCDPIGSNSLQCDPSGQCPGV 191
G C S +G C C+C GS C+ CP
Sbjct: 555 GYYCNCTTRTDTCMSSNGLLCSGRGKCECGSCVCIQPGSYGDTCEKCPTCPDA 607
Score = 37.8 bits (87), Expect = 0.002
Identities = 25/115 (21%), Positives = 38/115 (33%), Gaps = 9/115 (7%)
Query: 82 TPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVG--------SLNRT 133
V + + P + VG + + + CDC N
Sbjct: 393 DTVSFSIEAKVRGCPQEKEKSFTIKPVGFKDSLIVQVTFDCDCACQAQAEPNSHRCNNGN 452
Query: 134 CDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQC 188
G C C PG G++CE + ++ D C P P+ S +C GQC
Sbjct: 453 GTFECGVCRCGPGWLGSQCECSEEDYRPSQQDECSPREGQPVCSQRGECL-CGQC 506
Score = 27.0 bits (59), Expect = 5.3
Identities = 23/142 (16%), Positives = 38/142 (26%), Gaps = 29/142 (20%)
Query: 48 TCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCE 107
C + G C C T T + CS + +C +
Sbjct: 548 LCDSDWTGYY----------CNCTTR------TDTCMSSN-GLLCSGRGKCECGSCVCIQ 590
Query: 108 VGHYNIISGEGC-KSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDG 166
G Y G+ C K C + + C C+ G + N Y
Sbjct: 591 PGSY----GDTCEKCPTCPDACTFKKEC------VECKKFDRGALHDENTCNRYCRDEIE 640
Query: 167 CKPCMCDPIGSNSLQCDPSGQC 188
+ D G +++ C +
Sbjct: 641 SVKELKDT-GKDAVNCTYKNED 661
>3k6s_B Integrin beta-2; cell receptor, adhesion molecule, cell adhesion,
pyrrolidone carboxylic acid; HET: NAG MAN; 3.50A {Homo
sapiens} PDB: 3k71_B* 3k72_B*
Length = 687
Score = 41.6 bits (97), Expect = 9e-05
Identities = 25/143 (17%), Positives = 42/143 (29%), Gaps = 19/143 (13%)
Query: 48 TCLPGYFGDA--LALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQ 105
C GY G + + + + + D + GQC C +
Sbjct: 449 RCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDCVCGQCLCHT---SDVPGK 505
Query: 106 CEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLD 165
G Y C+ + G R G+C C PG G+ C+
Sbjct: 506 LIYGQYCECDTINCERYNGQVCGGPGR-GLCFCGKCRCHPGFEGSACQ------------ 552
Query: 166 GCKPCMCDPIGSNSLQCDPSGQC 188
C+ + ++C G+C
Sbjct: 553 -CERTTEGCLNPRRVECSGRGRC 574
Score = 34.3 bits (78), Expect = 0.024
Identities = 23/126 (18%), Positives = 30/126 (23%), Gaps = 3/126 (2%)
Query: 64 DCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCD 123
+ C TF T + V+ V + E
Sbjct: 372 NQPRGDCDGVQINVPITFQVKV-TATECIQEQSFVIRALGFTDIVTVQVLPQCECRCRDQ 430
Query: 124 CDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDG-CKPCMCDPIGSNSLQC 182
+ G C C G G CE L+G C+ I S C
Sbjct: 431 SRDRSLCHGKGFLECGICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC 490
Query: 183 DPSGQC 188
GQC
Sbjct: 491 V-CGQC 495
Score = 30.1 bits (67), Expect = 0.52
Identities = 17/71 (23%), Positives = 23/71 (32%), Gaps = 10/71 (14%)
Query: 85 CDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCR 144
G+C C P G+ C QCE ++ +C G C C C
Sbjct: 533 GLCFCGKCRCHPGFEGSAC-QCERTTEGCLNPRRV---ECSGRG----RCR--CNVCECH 582
Query: 145 PGVTGTRCELC 155
G C+ C
Sbjct: 583 SGYQLPLCQEC 593
>2wg3_C Hedgehog-interacting protein; lipoprotein, development, membrane,
secreted, protease, PALM hydrolase, developmental
protein, autocatalytic cleavage; HET: NAG; 2.60A {Homo
sapiens} PDB: 2wg4_B 2wfx_B 2wft_A 3ho3_A 3ho4_A 3ho5_A
Length = 463
Score = 38.8 bits (90), Expect = 7e-04
Identities = 21/96 (21%), Positives = 34/96 (35%), Gaps = 11/96 (11%)
Query: 66 EPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCD 125
+ +T T C +L C T +C G+ C++ C+
Sbjct: 376 LMPEECRATVQPAQTLTSECSRLCRNGYC------TPTGKCCCS--PGWEGDFCRTAKCE 427
Query: 126 PVGSLNRTC-DPITGQCLCRPGVTGTRCELCQPNHY 160
P C P +CLC+ G G +CE +H+
Sbjct: 428 PACRHGGVCVRP--NKCLCKKGYLGPQCEQVDHHHH 461
Score = 29.2 bits (65), Expect = 0.96
Identities = 17/68 (25%), Positives = 24/68 (35%), Gaps = 7/68 (10%)
Query: 121 SCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSL 180
P +L C + C P TG C C P G+ D C+ C+P +
Sbjct: 382 RATVQPAQTLTSECSRLCRNGYCTP--TGKCC--CSP---GWEGDFCRTAKCEPACRHGG 434
Query: 181 QCDPSGQC 188
C +C
Sbjct: 435 VCVRPNKC 442
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling
pathway, WNT antagonist, MO cancer, glycosaminoglycan;
HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Length = 188
Score = 33.4 bits (75), Expect = 0.024
Identities = 13/68 (19%), Positives = 23/68 (33%), Gaps = 1/68 (1%)
Query: 93 SCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRC 152
V+ + + N I + C+ +C C+ C C G G C
Sbjct: 120 EVDVIVMNSEGNTILXTPQNAIFFKTCQQAECPGGCRNGGFCNE-RRICECPDGFHGPHC 178
Query: 153 ELCQPNHY 160
E + +H+
Sbjct: 179 EGTKHHHH 186
>3qd6_R CD40L receptor, tumor necrosis factor receptor superfamily member;
immune regulator, cytokine-cytokine receptor compl; HET:
NAG; 3.50A {Homo sapiens}
Length = 177
Score = 33.0 bits (74), Expect = 0.037
Identities = 28/134 (20%), Positives = 37/134 (27%), Gaps = 1/134 (0%)
Query: 39 YNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHV 98
Y C C PG + + E C L+T C Q
Sbjct: 11 YLINSQCCSLCQPGQKLVSDCTEFTETECLPCGESEFLDTWNRETHCHQHKYCDPNLGLR 70
Query: 99 VGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPN 158
V G C S C+ L+R+C P G GV+ T CE C
Sbjct: 71 VQQKGTSETDTICTCEEGWHCTSEACESC-VLHRSCSPGFGVKQIATGVSDTICEPCPVG 129
Query: 159 HYGFSLDGCKPCMC 172
+ + C
Sbjct: 130 FFSNVSSAFEKCHP 143
>2dtg_E Insulin receptor; IR ectodomain, X-RAY crystallography, hormone
receptor/immune system complex; 3.80A {Homo sapiens}
SCOP: b.1.2.1 b.1.2.1 b.1.2.1 c.10.2.5 c.10.2.5 g.3.9.1
PDB: 3loh_E
Length = 897
Score = 30.7 bits (68), Expect = 0.35
Identities = 23/151 (15%), Positives = 39/151 (25%), Gaps = 21/151 (13%)
Query: 29 GTTGDCLKCIYNTGGPQC-DTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQ 87
C+ C +C +TC P Y+ + CQ C
Sbjct: 220 DDPTKCVACRNFYLDGRCVETCPPPYYHF-QDWRCVNFSFCQ----------DLHHKCKN 268
Query: 88 LTGQCSCKPHVV--GTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRP 145
Q C +V+ +C G+ S C C G + C + G+
Sbjct: 269 SRRQG-CHQYVIHNNKCIPECPSGYTMNSSNLLCTPCL----GPCPKVCHLLEGEKTIDS 323
Query: 146 GVTGTRCELCQ--PNHYGFSLDGCKPCMCDP 174
+ C ++ G +
Sbjct: 324 VTSAQELRGCTVINGSLIINIRGGNNLAAEL 354
>3v4v_B Integrin beta-7; cell adhesion, madcam-1, membrane; HET: NAG BMA
MAN 0DU; 3.10A {Homo sapiens} PDB: 3v4p_B*
Length = 503
Score = 30.3 bits (67), Expect = 0.46
Identities = 18/116 (15%), Positives = 25/116 (21%), Gaps = 15/116 (12%)
Query: 48 TCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCE 107
C + A +G C + T C +
Sbjct: 392 QCEGPEKREGKAEDRGQCNHVRINQTVTFWVSLQATHCLPEPHLLRLRALGFSEEL---- 447
Query: 108 VGHYNIISGEGCKSCDCDPVGSLNRTCDPIT-----GQCLCRPGVTGTRCELCQPN 158
I+ C+C C G C C PG G CE +
Sbjct: 448 -----IVELHTLCDCNCSDTQPQAPHCSDGQGHLQCGVCSCAPGRLGRLCE-SRGL 497
>1zlg_A Anosmin 1; insulin-like growth factor receptor Cys-rich fold, WHEY
acidic protein fold, fibronectin type III fold, hormone-
growth factor complex; NMR {Homo sapiens}
Length = 680
Score = 29.9 bits (66), Expect = 0.60
Identities = 19/145 (13%), Positives = 35/145 (24%), Gaps = 10/145 (6%)
Query: 43 GPQCDTCLPGYFGDALALPKGDCEPC--QCYIPGTLETETFTPVCDQLTGQCSCKPHVVG 100
++L+ C +C F C+ H
Sbjct: 1 AAGPGAAAARRLDESLSAGSVQRARCASRCLSLQITRISAFFQHFQNNGSLVWCQNHKQC 60
Query: 101 TNC-DQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPN- 158
+ C + C+ + C+S + C C + + C
Sbjct: 61 SKCLEPCK--ESGDLRKHQCQSFCEPLFPKKSYECL---TSCEFLKYILLVKQGDCPAPE 115
Query: 159 -HYGFSLDGCKPCMCDPIGSNSLQC 182
GF+ + C D S +C
Sbjct: 116 KASGFAAACVESCEVDNECSGVKKC 140
>2vj2_A Jagged-1; signalling, polymorphism, glycoprotein, extracellular,
developmental protein, notch signaling pathway, EGF,
DSL, notch, calcium, membrane; 2.50A {Homo sapiens} PDB:
2kb9_A
Length = 169
Score = 28.5 bits (64), Expect = 1.0
Identities = 18/87 (20%), Positives = 26/87 (29%), Gaps = 17/87 (19%)
Query: 89 TGQCSCKPHVVGTNCDQ------CEVGHYNII-----------SGEGCKSCDCDPVGSLN 131
+C + G C++ GHY G C C S
Sbjct: 16 RSAVTCDDYYYGFGCNKFCRPRDDFFGHYACDQNGNKTCMEGWMGPECNRAICRQGCSPK 75
Query: 132 RTCDPITGQCLCRPGVTGTRCELCQPN 158
+ G C C+ G G C+ C P+
Sbjct: 76 HGSCKLPGDCRCQYGWQGLYCDKCIPH 102
>2hr7_A Insulin receptor; hormone receptor, leucine rich repeat,
transferase; HET: NAG BMA MAN FUC P33; 2.32A {Homo
sapiens}
Length = 486
Score = 28.7 bits (63), Expect = 1.3
Identities = 21/170 (12%), Positives = 40/170 (23%), Gaps = 12/170 (7%)
Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLT 89
T + C P +G C +C + D T
Sbjct: 172 TVINGQFVERCWTHSHCQKVCPTICKSHGCTAEGLCCHSECLGNCS--------QPDDPT 223
Query: 90 GQCSCKPHVVGTNC-DQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVT 148
+C+ + C + C +Y+ C L+ C Q + +
Sbjct: 224 KCVACRNFYLDGRCVETCPPPYYHFQDWRCVNFSFCQ---DLHHKCKNSRRQGCHQYVIH 280
Query: 149 GTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQCPGVFMNRAEM 198
+C P+ Y + C + + E+
Sbjct: 281 NNKCIPECPSGYTMNSSNLLCTPCLGPCPKVCHLLEGEKTIDSVTSAQEL 330
>2p26_A Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 1.75A {Homo sapiens} PDB: 1yuk_B*
1yuk_A* 2p28_A*
Length = 280
Score = 28.3 bits (62), Expect = 1.8
Identities = 18/70 (25%), Positives = 26/70 (37%), Gaps = 8/70 (11%)
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPG--- 146
G C C +G NC+ G + C+ + + S C + GQCLC
Sbjct: 207 GICRCDTGYIGKNCECQTQGRSSQELEGSCRKDNNSIICSGLGDC--VCGQCLCHTSDVP 264
Query: 147 ---VTGTRCE 153
+ G CE
Sbjct: 265 GKLIYGQYCE 274
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor
complex, cytokine, cytokine-cytokine recepto; 3.00A
{Homo sapiens}
Length = 173
Score = 27.9 bits (61), Expect = 2.0
Identities = 24/139 (17%), Positives = 35/139 (25%), Gaps = 13/139 (9%)
Query: 39 YNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKPHV 98
T C C PG D C + + P C +CS
Sbjct: 15 DQTAQMCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWVPECLSCGSRCSSDQVE 74
Query: 99 VG-------TNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTR 151
C + + EGC+ C + R C P G +
Sbjct: 75 TQACTREQNRICTCRPGWYCALSKQEGCRLC------APLRKCRPGFGVARPGTETSDVV 128
Query: 152 CELCQPNHYGFSLDGCKPC 170
C+ C P + + C
Sbjct: 129 CKPCAPGTFSNTTSSTDIC 147
>2p28_B Integrin beta-2; hybrid domain, PSI domain, I-EGF DOM cell
adhesion; HET: NAG; 2.20A {Homo sapiens} PDB: 1l3y_A
Length = 217
Score = 27.7 bits (61), Expect = 2.5
Identities = 16/64 (25%), Positives = 22/64 (34%), Gaps = 4/64 (6%)
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTG 149
GQC C V + + I+ E C G G+C C PG G
Sbjct: 154 GQCLCHTSDVPGKLIYGQYCECDTINCERYNGQVCGGPG----RGLCFCGKCRCHPGFEG 209
Query: 150 TRCE 153
+ C+
Sbjct: 210 SACQ 213
>4d90_A EGF-like repeat and discoidin I-like domain-conta protein 3; RGD
finger, cell adhesion, innate immunity, extracellular MA
protein; HET: NGA NAG FUC; 2.60A {Homo sapiens}
Length = 143
Score = 26.6 bits (59), Expect = 4.1
Identities = 14/71 (19%), Positives = 17/71 (23%), Gaps = 8/71 (11%)
Query: 91 QCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDP-------VGSLNRTCDPITG-QCL 142
C C NC + C +P S D G C
Sbjct: 24 SCECPDGFTDPNCSSVVEVASDEEEPTSAGPCTPNPCHNGGTCEISEAYRGDTFIGYVCK 83
Query: 143 CRPGVTGTRCE 153
C G G C+
Sbjct: 84 CPRGFNGIHCQ 94
>1yo8_A Thrombospondin-2; EGF, Ca(2+)-binding domains, lectin domain,
disulfide, cell; HET: NAG MAN; 2.60A {Homo sapiens} PDB:
2rhp_A*
Length = 634
Score = 26.9 bits (59), Expect = 6.1
Identities = 21/160 (13%), Positives = 38/160 (23%), Gaps = 2/160 (1%)
Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTL-ETETFTPVCDQLT 89
T +C+ G C C P Y G+ + + + + T C +
Sbjct: 57 TSKVPRCVNTQPGFHCLPCPPRYRGNQPVGVGLEAAKTEKQVCEPENPCKDKTHNCHKHA 116
Query: 90 GQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTG 149
+C+ G Y + D D +LN C +
Sbjct: 117 ECIYLGHFSDPMYKCECQTG-YAGDGLICGEDSDLDGWPNLNLVCATNATYHCIKDNCPH 175
Query: 150 TRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQCP 189
+ D C + ++ P
Sbjct: 176 LPNSGQEDFDKDGIGDACDDDDDNDGVTDEKDNCQLLFNP 215
Score = 26.5 bits (58), Expect = 7.2
Identities = 25/164 (15%), Positives = 41/164 (25%), Gaps = 10/164 (6%)
Query: 32 GDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQLTGQ 91
+C+ + + C GY GD L + P +
Sbjct: 116 AECIYLGHFSDPMYKCECQTGYAGDGLI---CGEDSDLDGWPNLNLVCATNATYHCIKDN 172
Query: 92 CSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGVTGTR 151
C P+ + D+ +G + + D N Q G R
Sbjct: 173 CPHLPNSGQEDFDKDGIG----DACDDDDDNDGVTDEKDNCQLLFNPRQADYDKDEVGDR 228
Query: 152 CELC--QPNHYGFSLDGC-KPCMCDPIGSNSLQCDPSGQCPGVF 192
C+ C N D + C + CP V+
Sbjct: 229 CDNCPYVHNPAQIDTDNNGEGDACSVDIDGDDVFNERDNCPYVY 272
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine,
receptor-ligan complex, CO-stimulator, TNFSF; 2.00A
{Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB:
2hev_R
Length = 146
Score = 26.2 bits (57), Expect = 6.1
Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 5/93 (5%)
Query: 41 TGGPQCDTCLPGYFGDALA----LPKGDCEPCQCYIPGTLETETFTPVCDQLTGQCSCKP 96
+ C C PG++ D ++ P C L T T VC G
Sbjct: 35 SQNTVCRPCGPGFYNDVVSSKPCKPCTWCNLRSGSERKQLCTATQDTVCRCRAGTQPLDS 94
Query: 97 HVVGTNCDQCEVGHYNIISGEGCKSC-DCDPVG 128
+ G +C C GH++ + CK +C G
Sbjct: 95 YKPGVDCAPCPPGHFSPGDNQACKPWTNCTLAG 127
>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase,
structural genomics, NPPSFA; HET: MES; 2.50A {Thermus
thermophilus} PDB: 2ejv_A*
Length = 343
Score = 26.4 bits (59), Expect = 7.1
Identities = 6/18 (33%), Positives = 10/18 (55%)
Query: 96 PHVVGTNCDQCEVGHYNI 113
H+V C C G+Y++
Sbjct: 89 SHIVCHACPACRTGNYHV 106
>2e26_A Reelin, reeler protein; signaling protein; HET: NAG BMA; 2.00A {Mus
musculus} PDB: 3a7q_A*
Length = 725
Score = 26.5 bits (57), Expect = 7.6
Identities = 11/69 (15%), Positives = 19/69 (27%), Gaps = 2/69 (2%)
Query: 120 KSCDCDPVGSLNRTCDPITGQCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIGSNS 179
C + S + C + G C+C G C+ + + D +
Sbjct: 533 IGDGCLDMCSGHGRC--VQGSCVCDEQWGGLYCDEPETSLPTQLKDNFNRAPSNQNWLTV 590
Query: 180 LQCDPSGQC 188
S C
Sbjct: 591 SGGKLSTVC 599
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR
superfamily, viral protein; HET: NAG; 2.65A {Human
herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Length = 167
Score = 25.9 bits (56), Expect = 8.4
Identities = 33/144 (22%), Positives = 42/144 (29%), Gaps = 10/144 (6%)
Query: 34 CLKCIYNTGGPQCDTCLPGYF--GDALALPKGDCEPCQCYIPGT-LETETFTPVCDQLTG 90
C + Y G C C PGY L CEPC PGT + C Q
Sbjct: 4 CKEDEYPVGSECCPKCSPGYRVKEACGELTGTVCEPCP---PGTYIAHLNGLSKCLQCQM 60
Query: 91 QCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGS--LNRTCDPITGQCLCRPGVT 148
NC + E G C D D + T P
Sbjct: 61 CDPAMGLRASRNCSRTENAVCGCSPGHFCIVQDGDHCAACRAYATSSPGQRVQKGGTESQ 120
Query: 149 GTRCELCQPNHY--GFSLDGCKPC 170
T C+ C P + +L+ C+
Sbjct: 121 DTLCQNCPPGTFSPNGTLEECQHQ 144
>3h5c_B Vitamin K-dependent protein Z; protein Z-protein Z inhibitor
complex, blood coagulation, CL PAIR of basic residues,
disulfide bond, EGF-like domain; HET: NAG BGC; 3.26A
{Homo sapiens}
Length = 317
Score = 25.8 bits (57), Expect = 9.9
Identities = 19/73 (26%), Positives = 25/73 (34%), Gaps = 8/73 (10%)
Query: 119 CKSCDCDPVGSLNRTCDPITG--QCLCRPGVTGTRCELCQPNHYGFSLDGCKPCMCDPIG 176
C S C G +C C C PG G+ CEL + + DGC+ G
Sbjct: 8 CISQPCLHNG----SCQDSIWGYTCTCSPGYEGSNCELAKNECHPERTDGCQHFCLP--G 61
Query: 177 SNSLQCDPSGQCP 189
S C +
Sbjct: 62 QESYTCSCAQGYR 74
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.142 0.494
Gapped
Lambda K H
0.267 0.0548 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 3,176,044
Number of extensions: 193356
Number of successful extensions: 1195
Number of sequences better than 10.0: 1
Number of HSP's gapped: 673
Number of HSP's successfully gapped: 317
Length of query: 204
Length of database: 6,701,793
Length adjustment: 89
Effective length of query: 115
Effective length of database: 4,216,824
Effective search space: 484934760
Effective search space used: 484934760
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 55 (25.4 bits)