RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15475
         (204 letters)



>d1kloa3 g.3.11.2 (A:122-172) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 51

 Score = 46.8 bits (111), Expect = 2e-08
 Identities = 21/50 (42%), Positives = 31/50 (62%), Gaps = 3/50 (6%)

Query: 122 CDCDPVGSLNR--TCDPITGQCLCRPGVTGTRCELCQPNHYGF-SLDGCK 168
           C C+P G++ +  +C+P+TGQC C P V+G  C  C P +Y   S  GC+
Sbjct: 1   CACNPYGTVQQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50



 Score = 44.9 bits (106), Expect = 9e-08
 Identities = 23/53 (43%), Positives = 32/53 (60%), Gaps = 3/53 (5%)

Query: 68  CQCYIPGTLETETFTPVCDQLTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCK 120
           C C   GT+        C+ +TGQC C PHV G +C  C+ G+YN+ SG+GC+
Sbjct: 1   CACNPYGTV---QQQSSCNPVTGQCQCLPHVSGRDCGTCDPGYYNLQSGQGCE 50



 Score = 25.2 bits (55), Expect = 1.3
 Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 7/40 (17%)

Query: 30 TTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQ 69
           TG C +C+ +  G  C TC PGY+           + C+
Sbjct: 18 VTGQC-QCLPHVSGRDCGTCDPGYYNLQ------SGQGCE 50


>d1kloa2 g.3.11.2 (A:66-121) Laminin gamma1 chain {Mouse (Mus
           musculus) [TaxId: 10090]}
          Length = 56

 Score = 40.7 bits (95), Expect = 4e-06
 Identities = 13/52 (25%), Positives = 23/52 (44%), Gaps = 3/52 (5%)

Query: 122 CDCDPVGSLNRTCDPITGQCL-CRPGVTGTRCELCQPNHYGFSL--DGCKPC 170
           C+ +   +    C+ +TG+CL C     G  C+ C+   +G  L  +    C
Sbjct: 3   CNDNIDPNAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54



 Score = 36.4 bits (84), Expect = 1e-04
 Identities = 20/39 (51%), Positives = 25/39 (64%), Gaps = 2/39 (5%)

Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQ 69
          TG+CLKCIYNT G  CD C  G+FG+ LA      + C+
Sbjct: 19 TGECLKCIYNTAGFYCDRCKEGFFGNPLAP--NPADKCK 55



 Score = 34.5 bits (79), Expect = 7e-04
 Identities = 16/57 (28%), Positives = 25/57 (43%), Gaps = 5/57 (8%)

Query: 68  CQCYIPGTLETETFTPVCDQLTGQC-SCKPHVVGTNCDQCEVGHY-NIISGEGCKSC 122
           CQC              C++LTG+C  C  +  G  CD+C+ G + N ++      C
Sbjct: 1   CQCNDNIDP---NAVGNCNRLTGECLKCIYNTAGFYCDRCKEGFFGNPLAPNPADKC 54


>d1kloa1 g.3.11.2 (A:11-65) Laminin gamma1 chain {Mouse (Mus
          musculus) [TaxId: 10090]}
          Length = 55

 Score = 31.8 bits (72), Expect = 0.006
 Identities = 14/39 (35%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 31 TGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQ 69
             C  C   T G +C+ C  GYFGD L    G    C+
Sbjct: 17 EVVCTHCPTGTAGKRCELCDDGYFGDPLGSN-GPVRLCR 54



 Score = 25.3 bits (55), Expect = 1.3
 Identities = 15/53 (28%), Positives = 18/53 (33%), Gaps = 4/53 (7%)

Query: 122 CDCDPVGSLNRTCDPITGQCL-CRPGVTGTRCELCQPNHYG---FSLDGCKPC 170
           C C    S           C  C  G  G RCELC   ++G    S    + C
Sbjct: 1   CPCPGGSSCAIVPKTKEVVCTHCPTGTAGKRCELCDDGYFGDPLGSNGPVRLC 53


>d1vlba1 a.56.1.1 (A:81-193) Aldehyde oxidoreductase, domain 2
          {Desulfovibrio gigas [TaxId: 879]}
          Length = 113

 Score = 25.5 bits (55), Expect = 2.9
 Identities = 10/31 (32%), Positives = 15/31 (48%)

Query: 42 GGPQCDTCLPGYFGDALALPKGDCEPCQCYI 72
          GG QC  C PG+   A  L   + +P +  +
Sbjct: 16 GGAQCGFCSPGFIVSAKGLLDTNADPSREDV 46


>d2e2dc1 b.40.3.1 (C:1001-1180) TIMP-2 {Cow (Bos taurus) [TaxId:
           9913]}
          Length = 180

 Score = 24.9 bits (54), Expect = 6.7
 Identities = 8/42 (19%), Positives = 12/42 (28%), Gaps = 1/42 (2%)

Query: 120 KSCDCDPVGSLNRTCDPIT-GQCLCRPGVTGTRCELCQPNHY 160
             C+C         C   +  +CL    VT       Q   +
Sbjct: 124 MGCECKITRCPMIPCYISSPDECLWMDWVTEKNINGHQAKFF 165


>d1ofwa_ a.138.1.1 (A:) Nine-heme cytochrome c {Desulfovibrio
           desulfuricans, ATCC 27774 [TaxId: 876]}
          Length = 293

 Score = 24.9 bits (52), Expect = 7.2
 Identities = 18/161 (11%), Positives = 27/161 (16%), Gaps = 5/161 (3%)

Query: 28  AGTTGDCLKCIYNTGGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETETFTPVCDQ 87
                +C  C +      C TC     G A                           C  
Sbjct: 41  EKKIDNCETCHHTGDPVSCSTC-HTVEGKAEGNYITLDRAMHATNIAKRAKGNTPVSCVS 99

Query: 88  LTGQCSCKPHVVGTNCDQCEVGHYNIISGEGCKSCDCDPVGSLNRTCDPITGQCLCRPGV 147
               C  +       C  C            C +C                   L     
Sbjct: 100 ----CHEQQTKERRECAGCHAIVTPKRDEAWCATCHNITPSMTPEQMQKGINGTLLPGDN 155

Query: 148 TGTRCELCQPNHYGFSLDGCKPCMCDPIGSNSLQCDPSGQC 188
                E          +          I + + + +PS   
Sbjct: 156 EALAAETVLAQKTVEPVSPMLAPYKVVIDALADKYEPSNFT 196


>d1jroa1 a.56.1.1 (A:85-166) Xanthine dehydrogenase chain A,
          domain 2 {Rhodobacter capsulatus [TaxId: 1061]}
          Length = 82

 Score = 23.8 bits (51), Expect = 7.8
 Identities = 11/39 (28%), Positives = 14/39 (35%)

Query: 42 GGPQCDTCLPGYFGDALALPKGDCEPCQCYIPGTLETET 80
           G QC  C PG+     A    D +     + G L   T
Sbjct: 15 HGSQCGFCTPGFIVSMAAAHDRDRKDYDDLLAGNLCRCT 53


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.322    0.142    0.494 

Gapped
Lambda     K      H
   0.267   0.0589    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 821,559
Number of extensions: 43659
Number of successful extensions: 298
Number of sequences better than 10.0: 1
Number of HSP's gapped: 207
Number of HSP's successfully gapped: 98
Length of query: 204
Length of database: 2,407,596
Length adjustment: 81
Effective length of query: 123
Effective length of database: 1,295,466
Effective search space: 159342318
Effective search space used: 159342318
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 51 (23.7 bits)