BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1548
(448 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|194856731|ref|XP_001968815.1| GG24297 [Drosophila erecta]
gi|195473856|ref|XP_002089208.1| Hel25E [Drosophila yakuba]
gi|190660682|gb|EDV57874.1| GG24297 [Drosophila erecta]
gi|194175309|gb|EDW88920.1| Hel25E [Drosophila yakuba]
Length = 424
Score = 592 bits (1527), Expect = e-167, Method: Compositional matrix adjust.
Identities = 312/459 (67%), Positives = 337/459 (73%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+ IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+ALS LL+EQNFPA+ IHRGMTQEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|321453633|gb|EFX64849.1| hypothetical protein DAPPUDRAFT_219465 [Daphnia pulex]
Length = 425
Score = 592 bits (1526), Expect = e-166, Method: Compositional matrix adjust.
Identities = 307/458 (67%), Positives = 341/458 (74%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADN+DLLDYEDEE TEQ+ +GAGDA AK KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNEDLLDYEDEEATEQVAVEGAGDAPAK-KEVKGTYVSIHSSGFRDFLLKPEILRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMD+LCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE ++ V VLV+CHTRELAFQISKEYERFSKYM+ IKVGVFF
Sbjct: 88 KSGMGKTAVFVLATLQQLEMVENQVSVLVLCHTRELAFQISKEYERFSKYMTTIKVGVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGL I KDE+ LK++ P IVVGTPGRILALVR+KKLNL LKHF+LDECDKMLE L+MRR
Sbjct: 148 GGLNIAKDEQTLKSNCPHIVVGTPGRILALVRSKKLNLRTLKHFVLDECDKMLEALDMRR 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE+KLTLHGLQQHYVKL
Sbjct: 208 DVQEIFRNTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDESKLTLHGLQQHYVKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
K+NEKN+KLFELLDVLEFNQVVIFVKS+ RC+AL LL EQNFPA++IHR MTQEERL +
Sbjct: 268 KDNEKNRKLFELLDVLEFNQVVIFVKSIQRCMALCQLLGEQNFPAIAIHRSMTQEERLSR 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGL IT
Sbjct: 328 YQQFKDFKKRILVATDLFGRGMDIERVNIVFNYDMPENSDSYLHRVARAGRFGTKGLGIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDENDAK+LN+VQ+RFDVSI+ LPDEIDLS+YIEGR
Sbjct: 388 FVSDENDAKVLNDVQERFDVSITPLPDEIDLSSYIEGR 425
>gi|194759123|ref|XP_001961799.1| GF14747 [Drosophila ananassae]
gi|190615496|gb|EDV31020.1| GF14747 [Drosophila ananassae]
Length = 424
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/459 (67%), Positives = 336/459 (73%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL I KDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAITKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+ALS LL+EQNFPA+ IHRGMTQEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|198476804|ref|XP_001357483.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
gi|198137859|gb|EAL34553.2| GA20225 [Drosophila pseudoobscura pseudoobscura]
Length = 424
Score = 591 bits (1523), Expect = e-166, Method: Compositional matrix adjust.
Identities = 312/459 (67%), Positives = 336/459 (73%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRSSPH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSSPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALAMLLTEQNFPAIGIHRGMTQEERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SD+NDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDDNDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|195118098|ref|XP_002003577.1| GI21901 [Drosophila mojavensis]
gi|195388486|ref|XP_002052911.1| GJ17817 [Drosophila virilis]
gi|193914152|gb|EDW13019.1| GI21901 [Drosophila mojavensis]
gi|194149368|gb|EDW65066.1| GJ17817 [Drosophila virilis]
Length = 424
Score = 588 bits (1515), Expect = e-165, Method: Compositional matrix adjust.
Identities = 309/459 (67%), Positives = 333/459 (72%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE E + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQNETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKNGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM Q+ERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMNQDERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|307178480|gb|EFN67169.1| Spliceosome RNA helicase Bat1 [Camponotus floridanus]
Length = 425
Score = 587 bits (1514), Expect = e-165, Method: Compositional matrix adjust.
Identities = 319/458 (69%), Positives = 346/458 (75%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+GD AK KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQVV-DGSGDVPAKNKEVKGTYVSIHSSGFRDFLLKPEILRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 88 KSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LKT P IVVGTPGRILALVR KKLNL LKHFILDECDKMLE L+MRR
Sbjct: 148 GGLPIQKDEEVLKTVCPHIVVGTPGRILALVRTKKLNLKHLKHFILDECDKMLELLDMRR 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH+KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTL+GLQQHYVKL
Sbjct: 208 DVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 268 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 328 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++YIEGR
Sbjct: 388 LVSDESDAKILNDVQERFDVNITELPDEIDLASYIEGR 425
>gi|195434048|ref|XP_002065015.1| GK14902 [Drosophila willistoni]
gi|194161100|gb|EDW76001.1| GK14902 [Drosophila willistoni]
Length = 424
Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust.
Identities = 308/459 (67%), Positives = 336/459 (73%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENRE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHY
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYNN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM+QEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMSQEERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+I+ELP+EIDLS+YIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNITELPEEIDLSSYIEGR 424
>gi|195034694|ref|XP_001988957.1| GH11448 [Drosophila grimshawi]
gi|193904957|gb|EDW03824.1| GH11448 [Drosophila grimshawi]
Length = 424
Score = 585 bits (1507), Expect = e-164, Method: Compositional matrix adjust.
Identities = 309/459 (67%), Positives = 332/459 (72%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE E + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQNETTAVESQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKNGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC AL+ LL+EQNFPA+ IHRGM Q++RL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCTALAQLLTEQNFPAIGIHRGMNQDDRLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|156550340|ref|XP_001606535.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 425
Score = 583 bits (1502), Expect = e-164, Method: Compositional matrix adjust.
Identities = 315/458 (68%), Positives = 346/458 (75%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQIV +G G+ +KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQIV-EGNGEVAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE+T+++VYVLVMCHTRELAFQISKEYERFSKYM N+KV VFF
Sbjct: 88 KSGMGKTAVFVLATLQQLESTENHVYVLVMCHTRELAFQISKEYERFSKYMQNVKVSVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK P IVVGTPGRILAL+++KKLNL LKHF+LDECDKMLEQL+MR+
Sbjct: 148 GGLPIQKDEEVLKNTCPHIVVGTPGRILALIKSKKLNLKHLKHFVLDECDKMLEQLDMRK 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHY+KL
Sbjct: 208 DVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYIKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL K
Sbjct: 268 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTK 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ FKDF KGLAIT
Sbjct: 328 YQSFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLAIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++YIEGR
Sbjct: 388 FISDESDAKILNDVQERFDVNITELPDEIDLASYIEGR 425
>gi|66532824|ref|XP_624894.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis mellifera]
gi|380028013|ref|XP_003697706.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Apis florea]
Length = 424
Score = 581 bits (1497), Expect = e-163, Method: Compositional matrix adjust.
Identities = 319/458 (69%), Positives = 345/458 (75%), Gaps = 80/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+ D AK KEVKG YVSIHSSGFRDFLLKPEILRAI+
Sbjct: 1 MADNDDLLDYEDEEQTEQLV-DGSRDTPAK-KEVKGTYVSIHSSGFRDFLLKPEILRAII 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 59 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK P IVVGTPGRILALVRNKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 207 DVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++YIEGR
Sbjct: 387 LVSDESDAKILNDVQERFDVNITELPDEIDLASYIEGR 424
>gi|340718595|ref|XP_003397750.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Bombus terrestris]
gi|350409690|ref|XP_003488817.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Bombus impatiens]
Length = 424
Score = 580 bits (1495), Expect = e-163, Method: Compositional matrix adjust.
Identities = 319/458 (69%), Positives = 345/458 (75%), Gaps = 80/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+ D AK KEVKG YVSIHSSGFRDFLLKPEILRAI+
Sbjct: 1 MADNDDLLDYEDEEQTEQLV-DGSRDTPAK-KEVKGTYVSIHSSGFRDFLLKPEILRAII 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 59 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK P IVVGTPGRILALVRNKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEVLKNVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 207 DVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++YIEGR
Sbjct: 387 LVSDESDAKILNDVQERFDVNITELPDEIDLASYIEGR 424
>gi|383858684|ref|XP_003704829.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Megachile
rotundata]
Length = 454
Score = 577 bits (1486), Expect = e-162, Method: Compositional matrix adjust.
Identities = 316/454 (69%), Positives = 341/454 (75%), Gaps = 80/454 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+GD AK KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQVV-DGSGDIAAK-KEVKGTYVSIHSSGFRDFLLKPEILRAIV 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC ++ P + H +AVLGMDILCQA
Sbjct: 59 DC-----------------------GFEHPSEVQ---HECI------PQAVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK P IVVGTPGRILALVRNKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEVLKNTCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 207 DVQEIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++Y
Sbjct: 387 LVSDESDAKILNDVQERFDVNITELPDEIDLASY 420
>gi|332019236|gb|EGI59746.1| ATP-dependent RNA helicase WM6 [Acromyrmex echinatior]
Length = 428
Score = 576 bits (1485), Expect = e-162, Method: Compositional matrix adjust.
Identities = 315/454 (69%), Positives = 343/454 (75%), Gaps = 80/454 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+GD +K KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQVV-DGSGDVPSK-KEVKGTYVSIHSSGFRDFLLKPEILRAIV 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 59 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLELTENQVYVLVMCHTRELAFQISKEYERFSKYMPHVKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LKT P IVVGTPGRILALVRNKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEMLKTVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH+KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTL+GLQQHYVKL
Sbjct: 207 DVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++Y
Sbjct: 387 LVSDESDAKILNDVQERFDVNITELPDEIDLASY 420
>gi|24581952|ref|NP_723089.1| helicase at 25E, isoform A [Drosophila melanogaster]
gi|24581954|ref|NP_723090.1| helicase at 25E, isoform B [Drosophila melanogaster]
gi|24581956|ref|NP_723091.1| helicase at 25E, isoform C [Drosophila melanogaster]
gi|195342749|ref|XP_002037961.1| GM18014 [Drosophila sechellia]
gi|195550904|ref|XP_002076131.1| GD11981 [Drosophila simulans]
gi|2500532|sp|Q27268.1|UAP56_DROME RecName: Full=ATP-dependent RNA helicase WM6; Short=DEAD box
protein UAP56; Short=Dmrnahel; AltName: Full=HEL/UAP56
gi|158313|gb|AAB65835.1| DECD family putative RNA helicase [Drosophila melanogaster]
gi|505583|emb|CAA56197.1| WM6 [Drosophila melanogaster]
gi|7296990|gb|AAF52261.1| helicase at 25E, isoform A [Drosophila melanogaster]
gi|21430206|gb|AAM50781.1| LD23644p [Drosophila melanogaster]
gi|22945674|gb|AAN10544.1| helicase at 25E, isoform B [Drosophila melanogaster]
gi|22945675|gb|AAN10545.1| helicase at 25E, isoform C [Drosophila melanogaster]
gi|194132811|gb|EDW54379.1| GM18014 [Drosophila sechellia]
gi|194201780|gb|EDX15356.1| GD11981 [Drosophila simulans]
gi|220946752|gb|ACL85919.1| Hel25E-PA [synthetic construct]
gi|220956384|gb|ACL90735.1| Hel25E-PA [synthetic construct]
Length = 424
Score = 576 bits (1484), Expect = e-161, Method: Compositional matrix adjust.
Identities = 313/459 (68%), Positives = 338/459 (73%), Gaps = 82/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+ IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LLKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+ALS LL+EQNFPA+ IHRGMTQEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIGIHRGMTQEERLN 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 326 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 386 TFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
>gi|21068659|emb|CAD21558.1| HEL protein [Chironomus tentans]
Length = 421
Score = 575 bits (1483), Expect = e-161, Method: Compositional matrix adjust.
Identities = 310/458 (67%), Positives = 337/458 (73%), Gaps = 83/458 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ V D + ++K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQAVVDAS-----EKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 55
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC + H A +AVLGMDILCQA
Sbjct: 56 DCG--------------------------------FEHPSAVQHECIPQAVLGMDILCQA 83
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE TD+ YVLVMCHTRELAFQISKEYERFSKYMS +KV VFF
Sbjct: 84 KSGMGKTAVFVLATLQQLEPTDNQAYVLVMCHTRELAFQISKEYERFSKYMSGVKVAVFF 143
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PIQKDEE LKT P IVVGTPGR+LAL+R+KKLNL LKHFILDECDKMLEQL+MR+
Sbjct: 144 GGMPIQKDEEVLKTTTPHIVVGTPGRVLALIRSKKLNLKNLKHFILDECDKMLEQLDMRK 203
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSKEIRP+CKKFM DPMEVYVDDE KLTLHGLQQHYVKL
Sbjct: 204 DVQEIFRNTPHGKQVMMFSATLSKEIRPICKKFMQDPMEVYVDDETKLTLHGLQQHYVKL 263
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC AL+TLL++QNFPA++IH M QEERL K
Sbjct: 264 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCEALATLLTDQNFPAIAIHAEMAQEERLAK 323
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 324 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 383
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDENDAKILN+VQDRFDV+I+ELPDEIDLS+YIEGR
Sbjct: 384 FVSDENDAKILNSVQDRFDVNITELPDEIDLSSYIEGR 421
>gi|322789368|gb|EFZ14680.1| hypothetical protein SINV_13808 [Solenopsis invicta]
Length = 420
Score = 575 bits (1481), Expect = e-161, Method: Compositional matrix adjust.
Identities = 315/454 (69%), Positives = 343/454 (75%), Gaps = 80/454 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V DG+GD AK KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTEQVV-DGSGDIPAK-KEVKGTYVSIHSSGFRDFLLKPEILRAIV 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC ++ P + H +AVLGMDILCQA
Sbjct: 59 DC-----------------------GFEHPSEVQ---HECI------PQAVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM ++KVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLEWTENQVYVLVMCHTRELAFQISKEYERFSKYMQHVKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LKT P IVVGTPGRILALVRNKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEVLKTVCPHIVVGTPGRILALVRNKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH+KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTL+GLQQHYVKL
Sbjct: 207 DVQEIFRSTPHSKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLNGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++Y
Sbjct: 387 LVSDESDAKILNDVQERFDVNITELPDEIDLASY 420
>gi|91083251|ref|XP_974045.1| PREDICTED: similar to DEAD box ATP-dependent RNA helicase
[Tribolium castaneum]
gi|270007718|gb|EFA04166.1| hypothetical protein TcasGA2_TC014413 [Tribolium castaneum]
Length = 425
Score = 574 bits (1479), Expect = e-161, Method: Compositional matrix adjust.
Identities = 317/460 (68%), Positives = 343/460 (74%), Gaps = 83/460 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVAD--GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MAD DDLLDYEDEEN EQ VA+ GAGD ++K +KG YVSIHSSGFRDFLLKPEILRA
Sbjct: 1 MADADDLLDYEDEENPEQTVAETVGAGD---QKKGIKGTYVSIHSSGFRDFLLKPEILRA 57
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
IVDC E + V + +P+ AVLGMDILC
Sbjct: 58 IVDCG--------------FEHPSEVQHECIPQ------------------AVLGMDILC 85
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM NIKVGV
Sbjct: 86 QAKSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTRELAFQISKEYERFSKYMPNIKVGV 145
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGGL IQKDEE LK + P IVVGTPGRILALVR+KKLNL LKHFILDECDKMLE L+M
Sbjct: 146 FFGGLSIQKDEEVLKNNCPHIVVGTPGRILALVRSKKLNLKHLKHFILDECDKMLELLDM 205
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEI+R++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RRDVQEIYRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYV 265
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KLKENEKNKKLFELLDVLEFNQVVIFVKSV RCIAL+ LL+EQNFPA+ IHRGM QEERL
Sbjct: 266 KLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCIALAQLLTEQNFPAIGIHRGMNQEERL 325
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+YQ+FKDF KGLA
Sbjct: 326 SRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 385
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+TF S+E+DAKILN VQDRFDV+I+ELPDEIDLSTYIEGR
Sbjct: 386 VTFVSEESDAKILNEVQDRFDVNITELPDEIDLSTYIEGR 425
>gi|357631512|gb|EHJ78982.1| hypothetical protein KGM_15394 [Danaus plexippus]
Length = 425
Score = 572 bits (1475), Expect = e-161, Method: Compositional matrix adjust.
Identities = 311/458 (67%), Positives = 341/458 (74%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE +Q DGA +A A +KEVKG+YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQADQQNVDGATEA-APKKEVKGSYVSIHSSGFRDFLLKPEILRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE +D++VYVLVMCHTRELAFQISKEYERFSKYM+ ++V VFF
Sbjct: 88 KSGMGKTAVFVLATLQQLEPSDNHVYVLVMCHTRELAFQISKEYERFSKYMAGVRVSVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PIQKDE+ LKT P IVVGTPGRILALV NKKLNL LKHFILDECDKMLE L+MRR
Sbjct: 148 GGMPIQKDEDVLKTACPHIVVGTPGRILALVNNKKLNLKHLKHFILDECDKMLESLDMRR 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 208 DVQEIFRNTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RCIAL+ LL++QNFPA+ IHR MTQ+ERL +
Sbjct: 268 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCIALAQLLTDQNFPAIGIHRNMTQDERLSR 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 328 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAKILN VQDRFDV+I+ELPDEI+LSTYIEGR
Sbjct: 388 MVSDENDAKILNEVQDRFDVNITELPDEIELSTYIEGR 425
>gi|389609001|dbj|BAM18112.1| helicase [Papilio xuthus]
Length = 425
Score = 570 bits (1469), Expect = e-160, Method: Compositional matrix adjust.
Identities = 310/458 (67%), Positives = 340/458 (74%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE + ADGA +A A +KEVKG+YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQADHQTADGATEA-APKKEVKGSYVSIHSSGFRDFLLKPEILRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE ++++VYVLVMCHTRELAFQISKEYERFSKYM+ ++V VFF
Sbjct: 88 KSGMGKTAVFVLATLQQLEPSENHVYVLVMCHTRELAFQISKEYERFSKYMAGVRVSVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PIQKDEE LKT P IVVGTPGRILALV +KKLNL LKHFILDECDKMLE L+MRR
Sbjct: 148 GGMPIQKDEEVLKTACPHIVVGTPGRILALVNSKKLNLKHLKHFILDECDKMLESLDMRR 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 208 DVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RCIAL LL++QNFPA+ IHR MTQ+ERL +
Sbjct: 268 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCIALGQLLTDQNFPAIGIHRNMTQDERLSR 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 328 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAKILN VQDRFDV+I+ELP+EI+LSTYIEGR
Sbjct: 388 MVSDENDAKILNEVQDRFDVNITELPEEIELSTYIEGR 425
>gi|156550342|ref|XP_001606676.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 425
Score = 569 bits (1466), Expect = e-159, Method: Compositional matrix adjust.
Identities = 309/458 (67%), Positives = 336/458 (73%), Gaps = 79/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TEQ+V G G+ +KEVKG YVSIHSSGFRDFLLKPEILRAI
Sbjct: 1 MADNDDLLDYEDEEQTEQVVT-GNGEVAPAKKEVKGTYVSIHSSGFRDFLLKPEILRAIS 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE ++ V VLVMCHTRELAFQISKEYERFSKY+ +KV VFF
Sbjct: 88 KSGMGKTAVFVLATLQQLELAENQVLVLVMCHTRELAFQISKEYERFSKYIPQVKVSVFF 147
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK P IVVGTPGRILAL+R+KKLNL LKHFILDECDKMLEQL+MR+
Sbjct: 148 GGLPIQKDEEVLKNTCPHIVVGTPGRILALIRSKKLNLKNLKHFILDECDKMLEQLDMRK 207
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 208 DVQEIFRSTPHNKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 267
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLD+LEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEERL K
Sbjct: 268 KENEKNKKLFELLDILEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEERLTK 327
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ FKDF KGLAIT
Sbjct: 328 YQAFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 387
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDE DAKILN+VQ+RFDV+I+ELPDEIDL++YIEGR
Sbjct: 388 LVSDEADAKILNDVQERFDVNITELPDEIDLASYIEGR 425
>gi|332376787|gb|AEE63533.1| unknown [Dendroctonus ponderosae]
Length = 424
Score = 559 bits (1441), Expect = e-157, Method: Compositional matrix adjust.
Identities = 305/458 (66%), Positives = 338/458 (73%), Gaps = 80/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +DLLDYEDEE TEQ V + + +K VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADAEDLLDYEDEEQTEQTVHEA--ETQETKKAVKGTYVSIHSSGFRDFLLKPEILRAIV 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 59 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ VYVLVMCHTRELAFQISKEYERFSKYM +IKVGVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLEPTENVVYVLVMCHTRELAFQISKEYERFSKYMPSIKVGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK + P IVVGTPGRILALV++KKLNL LKHFILDECDKMLE L+MRR
Sbjct: 147 GGLPIQKDEEMLKNNCPHIVVGTPGRILALVKSKKLNLKHLKHFILDECDKMLELLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEI+R++PH KQVMMFSATLSK+IRP+CKKFM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 207 DVQEIYRNTPHGKQVMMFSATLSKDIRPICKKFMQDPMEVYVDDEAKLTLHGLQQHYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM Q+ERL +
Sbjct: 267 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALAQLLTEQNFPAIGIHRGMDQKERLSR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
Y++FKDF KGLAIT
Sbjct: 327 YEQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F S+E+DAKILN VQDRFDV+I+ELPDEIDLS+YIEGR
Sbjct: 387 FVSEESDAKILNEVQDRFDVNITELPDEIDLSSYIEGR 424
>gi|410958716|ref|XP_003985960.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Felis catus]
Length = 435
Score = 558 bits (1439), Expect = e-156, Method: Compositional matrix adjust.
Identities = 297/463 (64%), Positives = 334/463 (72%), Gaps = 83/463 (17%)
Query: 33 PHSKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKP 89
P S MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKP
Sbjct: 4 PCSGMAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKP 61
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAIVDC E + V + +P+ A+LG
Sbjct: 62 ELLRAIVDCG--------------FEHPSEVQHECIPQ------------------AILG 89
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N
Sbjct: 90 MDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPN 149
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKML
Sbjct: 150 VKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKML 209
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
EQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGL
Sbjct: 210 EQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGL 269
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM
Sbjct: 270 QQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMP 329
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +YQ+FKDF
Sbjct: 330 QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFG 389
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 390 TKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 432
>gi|4758112|ref|NP_004631.1| spliceosome RNA helicase DDX39B [Homo sapiens]
gi|18375623|ref|NP_542165.1| spliceosome RNA helicase DDX39B [Homo sapiens]
gi|55742824|ref|NP_001005157.1| spliceosome RNA helicase DDX39B [Sus scrofa]
gi|114050801|ref|NP_001040608.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|166429536|ref|NP_001107635.1| spliceosome RNA helicase DDX39B [Pan troglodytes]
gi|194223324|ref|XP_001917652.1| PREDICTED: v-type proton ATPase subunit G 2 isoform 1 [Equus
caballus]
gi|338718573|ref|XP_003363850.1| PREDICTED: v-type proton ATPase subunit G 2 isoform 2 [Equus
caballus]
gi|395533821|ref|XP_003768951.1| PREDICTED: spliceosome RNA helicase DDX39B [Sarcophilus harrisii]
gi|397523218|ref|XP_003831638.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Pan paniscus]
gi|397523220|ref|XP_003831639.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Pan paniscus]
gi|402866418|ref|XP_003897379.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Papio anubis]
gi|402866420|ref|XP_003897380.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Papio anubis]
gi|402866422|ref|XP_003897381.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 3 [Papio anubis]
gi|426352363|ref|XP_004043682.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Gorilla
gorilla gorilla]
gi|426352365|ref|XP_004043683.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Gorilla
gorilla gorilla]
gi|2500529|sp|Q13838.1|DX39B_HUMAN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=ATP-dependent
RNA helicase p47; AltName: Full=DEAD box protein UAP56;
AltName: Full=HLA-B-associated transcript 1 protein
gi|38502870|sp|P60024.1|DX39B_PANTR RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|47117788|sp|Q29024.2|DX39B_PIG RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|61217531|sp|Q5RE47.1|DX39B_PONAB RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|61217533|sp|Q5TM17.1|DX39B_MACMU RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|587146|emb|CAA85523.1| nuclear RNA helicase (DEAD family) [Homo sapiens]
gi|6624728|emb|CAB63856.1| putative RNA helicase [Sus scrofa]
gi|12653187|gb|AAH00361.1| HLA-B associated transcript 1 [Homo sapiens]
gi|15277213|dbj|BAB63306.1| putative ATP-dependent RNA helicase [Homo sapiens]
gi|15278164|gb|AAH13006.1| HLA-B associated transcript 1 [Homo sapiens]
gi|18181952|dbj|BAB83886.1| BAT1 [Pan troglodytes]
gi|27544432|dbj|BAC54953.1| HLA-B associated transcript 1 [Homo sapiens]
gi|32127769|dbj|BAC78161.1| ATP-dependent RNA helicase [Pan troglodytes]
gi|32880161|gb|AAP88911.1| HLA-B associated transcript 1 [Homo sapiens]
gi|55700773|dbj|BAD69728.1| HLA-B associated transcript-1 [Macaca mulatta]
gi|55726381|emb|CAH89960.1| hypothetical protein [Pongo abelii]
gi|61362641|gb|AAX42257.1| HLA-B associated transcript 1 [synthetic construct]
gi|61362649|gb|AAX42258.1| HLA-B associated transcript 1 [synthetic construct]
gi|86197992|dbj|BAE78637.1| HLA-B associated transcript 1 [Homo sapiens]
gi|90085292|dbj|BAE91387.1| unnamed protein product [Macaca fascicularis]
gi|90960864|dbj|BAE92779.1| nuclear RNA helicase [Pan troglodytes]
gi|90960868|dbj|BAE92782.1| nuclear RNA helicase [Pan troglodytes]
gi|119623809|gb|EAX03404.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623812|gb|EAX03407.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623813|gb|EAX03408.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623814|gb|EAX03409.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623815|gb|EAX03410.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623816|gb|EAX03411.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|119623818|gb|EAX03413.1| hCG2005638, isoform CRA_a [Homo sapiens]
gi|123981956|gb|ABM82807.1| HLA-B associated transcript 1 [synthetic construct]
gi|123996783|gb|ABM85993.1| HLA-B associated transcript 1 [synthetic construct]
gi|162138207|gb|ABX82809.1| HLA-B-associated protein 1 [Sus scrofa]
gi|168985556|emb|CAQ10634.1| HLA-B associated transcript 1 [Homo sapiens]
gi|261859894|dbj|BAI46469.1| HLA-B associated transcript 1 [synthetic construct]
gi|266634526|dbj|BAI49420.1| HLA-B associated transcript 1 [Microcebus murinus]
gi|380783493|gb|AFE63622.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|380783495|gb|AFE63623.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|383411769|gb|AFH29098.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|383411771|gb|AFH29099.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|384949414|gb|AFI38312.1| spliceosome RNA helicase DDX39B [Macaca mulatta]
gi|410214944|gb|JAA04691.1| HLA-B associated transcript 1 [Pan troglodytes]
gi|410214946|gb|JAA04692.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410247506|gb|JAA11720.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410247508|gb|JAA11721.1| HLA-B associated transcript 1 [Pan troglodytes]
gi|410340525|gb|JAA39209.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410340527|gb|JAA39210.1| HLA-B associated transcript 1 [Pan troglodytes]
Length = 428
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|9790069|ref|NP_062667.1| spliceosome RNA helicase Ddx39b [Mus musculus]
gi|51592092|ref|NP_579834.2| spliceosome RNA helicase Ddx39b [Rattus norvegicus]
gi|356995868|ref|NP_001239386.1| spliceosome RNA helicase Ddx39b [Mus musculus]
gi|61217662|sp|Q9Z1N5.1|DX39B_MOUSE RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56; AltName: Full=HLA-B-associated transcript
1 protein
gi|61252099|sp|Q63413.3|DX39B_RAT RecName: Full=Spliceosome RNA helicase Ddx39b; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=ATP-dependent
RNA helicase p47; AltName: Full=DEAD box protein Uap56
gi|4809332|gb|AAD30177.1|AC007080_3 BAT1 [Mus musculus]
gi|4235116|gb|AAD13115.1| nuclear RNA helicase Bat1 [Mus musculus]
gi|15029704|gb|AAH11067.1| HLA-B-associated transcript 1A [Mus musculus]
gi|17529570|emb|CAC85694.1| putative RNA helicase [Rattus norvegicus]
gi|22137623|gb|AAH24859.1| HLA-B-associated transcript 1A [Mus musculus]
gi|26341686|dbj|BAC34505.1| unnamed protein product [Mus musculus]
gi|26353988|dbj|BAC40624.1| unnamed protein product [Mus musculus]
gi|32964852|gb|AAP91685.1| HLA-B associated transcript 1 [Mus musculus]
gi|32964854|gb|AAP91686.1| HLA-B associated transcript 1 [Mus musculus]
gi|51329823|gb|AAH80243.1| HLA-B associated transcript 1 [Rattus norvegicus]
gi|149028103|gb|EDL83554.1| HLA-B-associated transcript 1A, isoform CRA_a [Rattus norvegicus]
Length = 428
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|410307166|gb|JAA32183.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Pan troglodytes]
gi|410307168|gb|JAA32184.1| HLA-B associated transcript 1 [Pan troglodytes]
Length = 428
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLPRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|30585031|gb|AAP36788.1| Homo sapiens HLA-B associated transcript 1 [synthetic construct]
gi|60654019|gb|AAX29702.1| HLA-B associated transcript 1 [synthetic construct]
gi|60654021|gb|AAX29703.1| HLA-B associated transcript 1 [synthetic construct]
Length = 429
Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|397523222|ref|XP_003831640.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 3 [Pan paniscus]
Length = 443
Score = 556 bits (1433), Expect = e-156, Method: Compositional matrix adjust.
Identities = 296/459 (64%), Positives = 332/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 16 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 73
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 74 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 101
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 102 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 161
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 162 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 221
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 222 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 281
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 282 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 341
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 342 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 401
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 402 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 440
>gi|444721087|gb|ELW61840.1| Spliceosome RNA helicase DDX39B [Tupaia chinensis]
Length = 428
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN++QDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDMQDRFEVNISELPDEIDISSYIE 425
>gi|62177121|ref|NP_001014399.1| spliceosome RNA helicase DDX39B [Canis lupus familiaris]
gi|61217540|sp|Q5WR10.1|DX39B_CANFA RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|39540669|gb|AAR27886.1| BAT1 [Canis lupus familiaris]
Length = 428
Score = 555 bits (1431), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/459 (63%), Positives = 329/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEV--ETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|348576520|ref|XP_003474035.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Cavia porcellus]
Length = 428
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATL KEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|301789323|ref|XP_002930057.1| PREDICTED: spliceosome RNA helicase BAT1-like [Ailuropoda
melanoleuca]
gi|410958714|ref|XP_003985959.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Felis catus]
Length = 428
Score = 555 bits (1430), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|62897383|dbj|BAD96632.1| HLA-B associated transcript 1 variant [Homo sapiens]
Length = 428
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 295/459 (64%), Positives = 332/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFN+VVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNRVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|75832045|ref|NP_001028801.1| spliceosome RNA helicase DDX39B [Bos taurus]
gi|426250582|ref|XP_004019014.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 1 [Ovis aries]
gi|426250584|ref|XP_004019015.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 2 [Ovis aries]
gi|122140442|sp|Q3T147.1|DX39B_BOVIN RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|74353855|gb|AAI02132.1| HLA-B associated transcript 1 [Bos taurus]
gi|296474278|tpg|DAA16393.1| TPA: spliceosome RNA helicase BAT1 [Bos taurus]
Length = 428
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 331/459 (72%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|156602043|gb|ABU86917.1| Bat1 [Ornithorhynchus anatinus]
Length = 451
Score = 554 bits (1428), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/460 (63%), Positives = 330/460 (71%), Gaps = 83/460 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSES 426
>gi|431921583|gb|ELK18937.1| Spliceosome RNA helicase BAT1 [Pteropus alecto]
Length = 426
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/459 (63%), Positives = 328/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEV--ETAAGGDGTEATAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 425
>gi|355748421|gb|EHH52904.1| hypothetical protein EGM_13439 [Macaca fascicularis]
Length = 426
Score = 554 bits (1427), Expect = e-155, Method: Compositional matrix adjust.
Identities = 294/459 (64%), Positives = 330/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 425
>gi|327266482|ref|XP_003218034.1| PREDICTED: spliceosome RNA helicase BAT1-like [Anolis carolinensis]
Length = 428
Score = 553 bits (1426), Expect = e-155, Method: Compositional matrix adjust.
Identities = 291/459 (63%), Positives = 328/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
M +ND +LLDYED+E Q A G G + +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MTENDVDNELLDYEDDEVENQ--AAGEGVDVPSKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNEVQDRFEVNISELPDEIDISSYIE 425
>gi|225710008|gb|ACO10850.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
Length = 426
Score = 553 bits (1425), Expect = e-155, Method: Compositional matrix adjust.
Identities = 293/453 (64%), Positives = 322/453 (71%), Gaps = 79/453 (17%)
Query: 42 DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRI 101
DLLDYE EE+T + +KEVKG YVSIHSSGFRDFLLKPEILRAI DC
Sbjct: 7 DLLDYE-EEDTPTPAVTTESNGSEHKKEVKGTYVSIHSSGFRDFLLKPEILRAIGDCG-- 63
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMG 161
E + V + +P+ AVLGMDIL QAKSGMG
Sbjct: 64 ------------FEHPSEVQHECIPQ------------------AVLGMDILSQAKSGMG 93
Query: 162 KTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221
KTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKY+ KVGVFFGGL I
Sbjct: 94 KTAVFVLATLQQMEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGAKVGVFFGGLAI 153
Query: 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281
KDE+ LK++ P IVVGTPGRILALVR+KKLNL +KHFILDECDKMLEQL+MRRDVQEI
Sbjct: 154 SKDEQVLKSNCPHIVVGTPGRILALVRSKKLNLKNVKHFILDECDKMLEQLDMRRDVQEI 213
Query: 282 FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK 341
FRS+PH KQVMMFSATLSK++RPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLK+ EK
Sbjct: 214 FRSTPHEKQVMMFSATLSKDVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEK 273
Query: 342 NKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
N+KLFELLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FK
Sbjct: 274 NRKLFELLDVLEFNQVVIFVKSVQRCVALAQLLIEQNFPAIAIHRGMNQEERLSRYQQFK 333
Query: 402 DFH----------------------------------------------KGLAITFASDE 415
DF KGLAITF SDE
Sbjct: 334 DFQKRILVATNLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDE 393
Query: 416 NDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+DAK LN VQDRF+V I+ELPDEIDLSTYIEGR
Sbjct: 394 SDAKTLNEVQDRFEVDITELPDEIDLSTYIEGR 426
>gi|281342596|gb|EFB18180.1| hypothetical protein PANDA_020423 [Ailuropoda melanoleuca]
Length = 425
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/459 (63%), Positives = 330/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 425
>gi|19773876|gb|AAL98920.1| Bat1 [Rattus norvegicus]
Length = 428
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/459 (63%), Positives = 330/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEI PVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIPPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVL+FNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLQFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|334323693|ref|XP_001368591.2| PREDICTED: spliceosome RNA helicase DDX39B [Monodelphis domestica]
Length = 466
Score = 552 bits (1423), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/457 (64%), Positives = 329/457 (71%), Gaps = 83/457 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 423
>gi|355561520|gb|EHH18152.1| hypothetical protein EGK_14701 [Macaca mulatta]
Length = 426
Score = 552 bits (1422), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/459 (63%), Positives = 330/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL +NK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAQNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 425
>gi|157115837|ref|XP_001658306.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|94468806|gb|ABF18252.1| ATP-dependent RNA helicase [Aedes aegypti]
gi|108883476|gb|EAT47701.1| AAEL001216-PA [Aedes aegypti]
Length = 423
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/458 (67%), Positives = 338/458 (73%), Gaps = 81/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDE+ TEQ+ + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEDQTEQVTTEPAEQP---KKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ YVLVMCHTRELAFQISKEYERFSKYM NIKV VFF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK+ NP I+VGTPGR+LAL+RNKKLNL LKHFILDECDKMLEQL+MRR
Sbjct: 146 GGLPIQKDEEVLKSTNPHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKL
Sbjct: 206 DVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKL 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM QEERL +
Sbjct: 266 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSR 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 326 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDE DAKILN VQDRFDV+I+ELPDEIDLS+YIEGR
Sbjct: 386 FVSDETDAKILNEVQDRFDVNITELPDEIDLSSYIEGR 423
>gi|61217546|sp|Q5ZHZ0.1|DX39B_CHICK RecName: Full=Spliceosome RNA helicase DDX39B; AltName: Full=56 kDa
U2AF65-associated protein; AltName: Full=DEAD box
protein UAP56
gi|53136648|emb|CAG32653.1| hypothetical protein RCJMB04_32b9 [Gallus gallus]
gi|255661416|gb|ACU25864.1| HLA-B associated protein 1 [Meleagris gallopavo]
Length = 428
Score = 551 bits (1421), Expect = e-154, Method: Compositional matrix adjust.
Identities = 289/459 (62%), Positives = 328/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVEN--AAGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL ++KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|170057076|ref|XP_001864320.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
gi|167876642|gb|EDS40025.1| ATP-dependent RNA helicase WM6 [Culex quinquefasciatus]
Length = 423
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 311/458 (67%), Positives = 339/458 (74%), Gaps = 81/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDE+ TEQ+ A+ A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEDQTEQVAAEPAEQP---KKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T+S YVLVMCHTRELAFQISKEYERFSKYM +IKV VFF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPTESVPYVLVMCHTRELAFQISKEYERFSKYMPSIKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK+ NP I+VGTPGR+LAL+RNKKLNL LKHFILDECDKMLEQL+MRR
Sbjct: 146 GGLPIQKDEEVLKSTNPHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKL
Sbjct: 206 DVQEIFRNTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKL 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM QEERL +
Sbjct: 266 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSR 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 326 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDE DAKILN VQDRFDV+I+ELPDEIDLS+YIEGR
Sbjct: 386 FVSDEGDAKILNEVQDRFDVNITELPDEIDLSSYIEGR 423
>gi|432089424|gb|ELK23366.1| Spliceosome RNA helicase DDX39B [Myotis davidii]
Length = 469
Score = 551 bits (1420), Expect = e-154, Method: Compositional matrix adjust.
Identities = 298/476 (62%), Positives = 335/476 (70%), Gaps = 74/476 (15%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCW-----RILVATNLFGRGMDIER------------VNIVFNYDMPEDSDTYLHRV 136
AIVDC + G ER VN + + + H
Sbjct: 59 AIVDCGFEHPSEVQEPMGDVGLLQRQERLLPLLLLLLSSLVNPESGFWLSGAPSSVQHEC 118
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQI
Sbjct: 119 I------PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQI 172
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
SKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL
Sbjct: 173 SKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKH 232
Query: 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME+
Sbjct: 233 IKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEI 292
Query: 317 YVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376
+VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL E
Sbjct: 293 FVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVE 352
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------- 404
QNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 353 QNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSD 412
Query: 405 --------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 413 TYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 468
>gi|390461400|ref|XP_002746375.2| PREDICTED: LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
[Callithrix jacchus]
Length = 422
Score = 550 bits (1417), Expect = e-154, Method: Compositional matrix adjust.
Identities = 292/456 (64%), Positives = 328/456 (71%), Gaps = 83/456 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISS 422
>gi|344307250|ref|XP_003422295.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Loxodonta
africana]
Length = 440
Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust.
Identities = 293/457 (64%), Positives = 329/457 (71%), Gaps = 83/457 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D ME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDQMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 423
>gi|114306812|dbj|BAF31287.1| BAT1 protein [Homo sapiens]
Length = 443
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/474 (62%), Positives = 332/474 (70%), Gaps = 98/474 (20%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVY---------------VLVMCHTRELAFQISK 198
CQAKSGMGKTAVFVLATLQQLE VY VLVMCHTRELAFQISK
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVYLGRVLGRGFWLGLVSVLVMCHTRELAFQISK 146
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +K
Sbjct: 147 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 206
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
HFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 207 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 266
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQN
Sbjct: 267 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 326
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA++IHRGM QEERL +YQ+FKDF
Sbjct: 327 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 386
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 440
>gi|395828827|ref|XP_003787565.1| PREDICTED: spliceosome RNA helicase DDX39B-like isoform 1 [Otolemur
garnettii]
Length = 428
Score = 549 bits (1414), Expect = e-153, Method: Compositional matrix adjust.
Identities = 291/459 (63%), Positives = 330/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +++LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQSILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHT+ELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTQELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGHGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+ +YIE
Sbjct: 387 AITFVSDENDAKILNDVQDRFEVNISELPDEIDIFSYIE 425
>gi|509403|emb|CAA84355.1| BAT1 [Sus scrofa]
Length = 427
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 292/459 (63%), Positives = 329/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E A G A A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVE---TAAGGDGAEAAKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKE+RPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRMTPHEKQVMMFSATLSKEVRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRGILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 386 AITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 424
>gi|195155470|ref|XP_002018627.1| GL25900 [Drosophila persimilis]
gi|194114780|gb|EDW36823.1| GL25900 [Drosophila persimilis]
Length = 403
Score = 546 bits (1408), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/459 (64%), Positives = 318/459 (69%), Gaps = 103/459 (22%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVE---NQEAPKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFRSSPH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYV
Sbjct: 206 RDVQEIFRSSPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVN 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LKENEKNKKLFELLDVLEFN QNFPA+ IHRGMTQEERL
Sbjct: 266 LKENEKNKKLFELLDVLEFN---------------------QNFPAIGIHRGMTQEERLN 304
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+FKDF KGLAI
Sbjct: 305 RYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 364
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SD+NDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 365 TFVSDDNDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 403
>gi|290462501|gb|ADD24298.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
gi|290562772|gb|ADD38781.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
Length = 426
Score = 546 bits (1406), Expect = e-153, Method: Compositional matrix adjust.
Identities = 296/453 (65%), Positives = 324/453 (71%), Gaps = 79/453 (17%)
Query: 42 DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRI 101
DLLDYE+E+ T V A K KEVKG YVSIHSSGFRDFLLKPEILRAI DC
Sbjct: 7 DLLDYEEEDTTTTAVTTETNGAEHK-KEVKGTYVSIHSSGFRDFLLKPEILRAIGDCG-- 63
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMG 161
E + V + +P+ AVLGMDIL QAKSGMG
Sbjct: 64 ------------FEHPSEVQHECIPQ------------------AVLGMDILSQAKSGMG 93
Query: 162 KTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221
KTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKY+ IKVGVFFGGL I
Sbjct: 94 KTAVFVLATLQQMEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGIKVGVFFGGLAI 153
Query: 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281
KDE+ LK++ P IVVGTPGRILALVR+KKLNL KHFILDECDKMLEQL+MRRDVQEI
Sbjct: 154 SKDEQVLKSNCPHIVVGTPGRILALVRSKKLNLKHTKHFILDECDKMLEQLDMRRDVQEI 213
Query: 282 FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK 341
FR++PH KQVMMFSATLSKE+RPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLK+ EK
Sbjct: 214 FRNTPHEKQVMMFSATLSKEVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEK 273
Query: 342 NKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
N+KLFELLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM+QEERL +YQ+FK
Sbjct: 274 NRKLFELLDVLEFNQVVIFVKSVQRCVALAQLLIEQNFPAIAIHRGMSQEERLSRYQQFK 333
Query: 402 DFH----------------------------------------------KGLAITFASDE 415
DF KGLAITF SDE
Sbjct: 334 DFQKRILVATNLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDE 393
Query: 416 NDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+DAK LN VQDRF+V I+ELPDEIDLSTYIEGR
Sbjct: 394 SDAKTLNEVQDRFEVDITELPDEIDLSTYIEGR 426
>gi|225710812|gb|ACO11252.1| ATP-dependent RNA helicase DDX39 [Caligus rogercresseyi]
Length = 426
Score = 545 bits (1404), Expect = e-152, Method: Compositional matrix adjust.
Identities = 290/453 (64%), Positives = 319/453 (70%), Gaps = 79/453 (17%)
Query: 42 DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRI 101
DLLDYE EE+T + +KEVKG YVSIHSSGFRDFLLKPEILRAI DC
Sbjct: 7 DLLDYE-EEDTPTPAVTTESNGSEHKKEVKGTYVSIHSSGFRDFLLKPEILRAIGDCG-- 63
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMG 161
E + V + +P+ AVLGMDIL QAKSGMG
Sbjct: 64 ------------FEHPSEVQHECIPQ------------------AVLGMDILSQAKSGMG 93
Query: 162 KTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221
KTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKY+ KVGVFFGGL I
Sbjct: 94 KTAVFVLATLQQMEPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPGAKVGVFFGGLAI 153
Query: 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281
KDE+ LK++ P IVVGTPGRILALVR+KKLNL +KHFILDEC KMLEQL+MRRDVQEI
Sbjct: 154 SKDEQVLKSNCPHIVVGTPGRILALVRSKKLNLKNVKHFILDECGKMLEQLDMRRDVQEI 213
Query: 282 FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK 341
FRS+PH KQVMMFSATLSK++RPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLK+ EK
Sbjct: 214 FRSTPHEKQVMMFSATLSKDVRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKDTEK 273
Query: 342 NKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
N+KLFELLDVLEFNQVVIFVKSV RC+AL+ LL EQNF A++IHRGM QEERL +YQ+FK
Sbjct: 274 NRKLFELLDVLEFNQVVIFVKSVQRCVALAQLLIEQNFTAIAIHRGMNQEERLSRYQQFK 333
Query: 402 DFH----------------------------------------------KGLAITFASDE 415
DF KGLAITF SDE
Sbjct: 334 DFQKRILVATNLFGRGMDIERVNIVFNYDMPEDTDTYLHRVARAGRFGTKGLAITFVSDE 393
Query: 416 NDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+DAK LN VQDRF+V I+ELPDE DLSTYIEGR
Sbjct: 394 SDAKTLNEVQDRFEVDITELPDETDLSTYIEGR 426
>gi|122937741|gb|ABM68586.1| AAEL001216-PA [Aedes aegypti]
Length = 419
Score = 544 bits (1402), Expect = e-152, Method: Compositional matrix adjust.
Identities = 307/454 (67%), Positives = 334/454 (73%), Gaps = 81/454 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDE+ TEQ+ + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEDQTEQVTTEPAEQP---KKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T++ YVLVMCHTRELAFQISKEYERFSKYM NIKV VFF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPTENVPYVLVMCHTRELAFQISKEYERFSKYMPNIKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGLPIQKDEE LK+ NP I+VGTPGR+LAL+RNKKLNL LKHFILDECDKMLEQL+MRR
Sbjct: 146 GGLPIQKDEEVLKSTNPHIIVGTPGRVLALIRNKKLNLKHLKHFILDECDKMLEQLDMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKL
Sbjct: 206 DVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKL 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM QEERL +
Sbjct: 266 KENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSR 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 326 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAIT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
F SDE DAKILN VQDRFDV+I+ELPDEIDLS+Y
Sbjct: 386 FVSDETDAKILNEVQDRFDVNITELPDEIDLSSY 419
>gi|391346453|ref|XP_003747488.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Metaseiulus
occidentalis]
Length = 424
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 286/456 (62%), Positives = 327/456 (71%), Gaps = 80/456 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD D LLDYEDEE+ Q +ADGA +A + K G YVSIHSSGFRDFLLKPE+LRAIV
Sbjct: 1 MADTD-LLDYEDEEDQNQQIADGA-EAGKEVKTPAGGYVSIHSSGFRDFLLKPELLRAIV 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMDILCQA
Sbjct: 59 DCG--------------FEHPSEVQHECIPQ------------------AILGMDILCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKYM +++GVFF
Sbjct: 87 KSGMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYMPGVRIGVFF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GGL IQ DE+ LK+ P IVVGTPGRILAL+ +KKL+L +KHF+LDECDKML+ L+MRR
Sbjct: 147 GGLSIQNDEKTLKSACPHIVVGTPGRILALIGSKKLSLKNVKHFVLDECDKMLDSLDMRR 206
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++P+ KQV+MFSATLSKE+RPVC KFM DPME+YVD+EAKLTLHGLQQ+YVKL
Sbjct: 207 DVQEIFRNTPNEKQVLMFSATLSKEVRPVCLKFMQDPMEIYVDNEAKLTLHGLQQYYVKL 266
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
K+NEKN+KLFELLDVLEFNQVVIFVKSV RC+ALS LL+EQNFPA++IHR MTQE+RL +
Sbjct: 267 KDNEKNRKLFELLDVLEFNQVVIFVKSVQRCMALSQLLAEQNFPAIAIHRAMTQEDRLAR 326
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLAIT
Sbjct: 327 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPESTDTYLHRVARAGRFGTKGLAIT 386
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
F SD DAK LN VQDRFDVSISELPDEID+S+YIE
Sbjct: 387 FVSDSEDAKTLNEVQDRFDVSISELPDEIDISSYIE 422
>gi|440898761|gb|ELR50186.1| Spliceosome RNA helicase BAT1 [Bos grunniens mutus]
Length = 439
Score = 543 bits (1400), Expect = e-152, Method: Compositional matrix adjust.
Identities = 293/473 (61%), Positives = 331/473 (69%), Gaps = 97/473 (20%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVY--------------VLVMCHTRELAFQISKE 199
CQAKSGMGKTAVFVLATLQQLE V+ VLVMCHTRELAFQISKE
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVHLQRVLGKASWLVVSVLVMCHTRELAFQISKE 146
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
YERFSKYM ++KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KH
Sbjct: 147 YERFSKYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 206
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
FILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VD
Sbjct: 207 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVD 266
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
DE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNF
Sbjct: 267 DETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNF 326
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
PA++IHRGM QEERL +YQ+FKDF
Sbjct: 327 PAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYL 386
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 HRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 439
>gi|20302732|gb|AAM18861.1|AF391287_2 unknown [Branchiostoma floridae]
Length = 427
Score = 542 bits (1396), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/453 (62%), Positives = 321/453 (70%), Gaps = 80/453 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE+EE A AGD ++KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 7 NELLDYEEEEQETTTEA--AGDTAVQKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG- 63
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+L MD+LCQAKSGM
Sbjct: 64 -------FEHPSEVQHECI------------------------PQAILSMDVLCQAKSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM IK VFFGG+P
Sbjct: 93 GKTAVFVLATLQQIEPVDGQVAVLVMCHTRELAFQISKEYERFSKYMPTIKNAVFFGGMP 152
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
IQKD LKT+ P IVV TPGR+LAL R+K LNL +KHFILDECDKMLEQL+MRRDVQE
Sbjct: 153 IQKDRNTLKTNCPHIVVATPGRLLALARDKSLNLKHVKHFILDECDKMLEQLDMRRDVQE 212
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKLK+NE
Sbjct: 213 IFRMTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKDNE 272
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHR M QEERLK+Y +F
Sbjct: 273 KNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMGQEERLKRYNQF 332
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+F KGLAITF SD
Sbjct: 333 KNFERRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 392
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
ENDAK+LN VQDRF+V++SELPDEID+S+YIE
Sbjct: 393 ENDAKVLNEVQDRFEVNVSELPDEIDISSYIEA 425
>gi|115688648|ref|XP_001178866.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Strongylocentrotus
purpuratus]
Length = 429
Score = 541 bits (1395), Expect = e-151, Method: Compositional matrix adjust.
Identities = 287/461 (62%), Positives = 323/461 (70%), Gaps = 85/461 (18%)
Query: 37 MADNDD----LLDYEDEENTEQIVADGAGDALAKQKEVKG-AYVSIHSSGFRDFLLKPEI 91
MADND+ LLDYEDEE E AD GDA+ +QKE K YVSIHSSGFRDFLLKPE+
Sbjct: 1 MADNDENEQELLDYEDEEAQE--TADAGGDAVKQQKETKAKGYVSIHSSGFRDFLLKPEL 58
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC E + V + +P+ A+LGMD
Sbjct: 59 LRAIVDCG--------------FEHPSEVQHECIPQ------------------AILGMD 86
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQL+ D V VLVMCHTRELAFQI+KEYERFSKYM +K
Sbjct: 87 VLCQAKSGMGKTAVFVLATLQQLDPVDGQVSVLVMCHTRELAFQIAKEYERFSKYMPTVK 146
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VGVFFGGL I+KDE+ +KT+ P IVVGTPGR LAL R K LNL +KHFILDECDKMLEQ
Sbjct: 147 VGVFFGGLSIKKDEQTIKTNCPHIVVGTPGRTLALGRQKILNLKHVKHFILDECDKMLEQ 206
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQVMMFSATLSKE+RPVCKKFM DPMEVYVDDE KLTLHGLQQ
Sbjct: 207 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEVRPVCKKFMQDPMEVYVDDETKLTLHGLQQ 266
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL LL EQNFPA+ IHR M Q+
Sbjct: 267 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALCQLLVEQNFPAIGIHRAMQQD 326
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ FK F K
Sbjct: 327 ERLARYQAFKTFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 386
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLA+TF SDE DAK LN+VQDRF+V+I ELP+EID+++YIE
Sbjct: 387 GLAVTFVSDEEDAKTLNDVQDRFEVNIGELPEEIDIASYIE 427
>gi|213514512|ref|NP_001133398.1| Spliceosome RNA helicase BAT1 [Salmo salar]
gi|209153419|gb|ACI33160.1| Spliceosome RNA helicase BAT1 [Salmo salar]
Length = 428
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 285/454 (62%), Positives = 326/454 (71%), Gaps = 84/454 (18%)
Query: 41 DDLLDYEDEENTEQIVAD-GAGDALAKQKE-VKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
++LLDYE+++ +V D GD L+ +KE VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 8 NELLDYEEDD----VVGDLSGGDILSIKKERVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMD+LCQAKS
Sbjct: 64 G--------------FEHPSEVQHECIPQ------------------AILGMDVLCQAKS 91
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM IKV VFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPTIKVAVFFGG 151
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
L I+KDEE LK P +VVGTPGRILAL+RNK LNL +KHFILDECDKMLEQL+MRRDV
Sbjct: 152 LSIKKDEEVLKKECPHVVVGTPGRILALIRNKTLNLRHIKHFILDECDKMLEQLDMRRDV 211
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YVKLK+
Sbjct: 212 QEIFRLTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKD 271
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
NEKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEERL +YQ
Sbjct: 272 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 331
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FKDF KGLAITF
Sbjct: 332 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
SDE DA+ LN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 392 SDETDARTLNDVQDRFEVNISELPDEIDISSYIE 425
>gi|283854611|gb|ADB44901.1| DEAD(Asp-Glu-Ala-Asp) box polypeptide 39 [Macrobrachium nipponense]
Length = 432
Score = 541 bits (1393), Expect = e-151, Method: Compositional matrix adjust.
Identities = 277/428 (64%), Positives = 313/428 (73%), Gaps = 78/428 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG YVSIHSSGFRDFLLKPEILRAIVDC ++ P
Sbjct: 37 KKDVKGTYVSIHSSGFRDFLLKPEILRAIVDC-----------------------GFEHP 73
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ H +AVLGMDILCQAKSGMGKTAVFVLATLQQ++ D V VLVM
Sbjct: 74 SEVQ---HECI------PQAVLGMDILCQAKSGMGKTAVFVLATLQQIDPVDGQVSVLVM 124
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELA+QI+KEYERF+KYM N+KVGVFFGG+ + KDEE LK++ P IVVGTPGR+LAL
Sbjct: 125 CHTRELAYQIAKEYERFTKYMPNVKVGVFFGGMNVSKDEETLKSNCPHIVVGTPGRLLAL 184
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
+R KKLNL LKHF+LDECDKML QL+MRRDVQEIFR++PH KQVMMFSATLSKEIRPVC
Sbjct: 185 IRGKKLNLKNLKHFVLDECDKMLVQLDMRRDVQEIFRNTPHEKQVMMFSATLSKEIRPVC 244
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
KKFM DPMEVYVDDEAKLTLHGLQQHYVK+KENEKN+KLFELLD LEFNQVVIFVKSV R
Sbjct: 245 KKFMQDPMEVYVDDEAKLTLHGLQQHYVKIKENEKNRKLFELLDALEFNQVVIFVKSVQR 304
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPAV+IHR M QEERL +YQ+FKDF
Sbjct: 305 CMALAQLLVEQNFPAVAIHRAMGQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIV 364
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF S+E DAK+LN+VQ+RFDV+I+ELP+EID
Sbjct: 365 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSEEADAKVLNDVQERFDVNITELPEEID 424
Query: 441 LSTYIEGR 448
LSTYIEGR
Sbjct: 425 LSTYIEGR 432
>gi|432880279|ref|XP_004073639.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oryzias latipes]
Length = 427
Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust.
Identities = 279/461 (60%), Positives = 327/461 (70%), Gaps = 88/461 (19%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAK--QKEVKGAYVSIHSSGFRDFLLKPEI 91
MA+ND +LLDYED++ + GA ++ A +KEVKG+YVSIHSSGFRDFLLKPE+
Sbjct: 1 MAENDVDNELLDYEDDDEPQ-----GAPESAAPTGKKEVKGSYVSIHSSGFRDFLLKPEL 55
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI+DC F +++ I +A+LGMD
Sbjct: 56 LRAIIDCG--------FEHPSEVQHECI------------------------PQAILGMD 83
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
ILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM +K
Sbjct: 84 ILCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVMCHTRELAFQISKEYERFSKYMPTVK 143
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VFFGG+ I+ DE+ LK + P IVVGTPGRILAL+RNK LNL +KHF+LDECDKMLEQ
Sbjct: 144 AAVFFGGMAIKNDEDVLKKNCPHIVVGTPGRILALIRNKTLNLKNIKHFVLDECDKMLEQ 203
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQ+IFR +PH KQVMMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ
Sbjct: 204 LDMRRDVQDIFRITPHEKQVMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQ 263
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV RCIALS LL EQNFPA++IHRGM QE
Sbjct: 264 YYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALSQLLVEQNFPAIAIHRGMAQE 323
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 324 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 383
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLA+TF SDE DAK LN+VQDRF+V+++ELP+EID+S+YIE
Sbjct: 384 GLAVTFVSDETDAKTLNDVQDRFEVNVAELPEEIDISSYIE 424
>gi|387018188|gb|AFJ51212.1| ATP-dependent RNA helicase DDX39-like [Crotalus adamanteus]
Length = 427
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 282/461 (61%), Positives = 325/461 (70%), Gaps = 88/461 (19%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAK--QKEVKGAYVSIHSSGFRDFLLKPEI 91
MA+ D +LLDYED+E + G D +K+VKG+YVSIHSSGFRDFLLKPE+
Sbjct: 1 MAEQDVENELLDYEDDEEPQ-----GVTDVTPPLVKKDVKGSYVSIHSSGFRDFLLKPEL 55
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC F +++ I +A+LGMD
Sbjct: 56 LRAIVDCG--------FEHPSEVQHECI------------------------PQAILGMD 83
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM+N+K
Sbjct: 84 VLCQAKSGMGKTAVFVLATLQQIEPLDGQVSVLVMCHTRELAFQISKEYERFSKYMTNVK 143
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P IVVGTPGR LALVRNK LNL +KHF+LDECDKMLEQ
Sbjct: 144 VSVFFGGLSIKKDEEVLKKNCPHIVVGTPGRTLALVRNKTLNLRNVKHFVLDECDKMLEQ 203
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +P KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ
Sbjct: 204 LDMRRDVQEIFRLTPPEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQ 263
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK+ EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM+QE
Sbjct: 264 YYVKLKDTEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRGMSQE 323
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 324 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 383
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLAITF SDE DAKILN VQDRF+V+++ELP+EID+S+YIE
Sbjct: 384 GLAITFVSDEGDAKILNEVQDRFEVNVAELPEEIDISSYIE 424
>gi|351713130|gb|EHB16049.1| Spliceosome RNA helicase Bat1 [Heterocephalus glaber]
Length = 436
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 289/470 (61%), Positives = 326/470 (69%), Gaps = 94/470 (20%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEV--ETAAGAEGAEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNV-----------YVLVMCHTRELAFQISKEYER 202
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYER
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVCLRRVGRVFWVSVLVMCHTRELAFQISKEYER 146
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
FSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFIL
Sbjct: 147 FSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFIL 206
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATL KEIRPVC+KFM DPME++VDDE
Sbjct: 207 DECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPVCRKFMQDPMEIFVDDET 266
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA+
Sbjct: 267 KLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAI 326
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
+IHRGM QEERL +YQ+FKDF
Sbjct: 327 AIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRV 386
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y E
Sbjct: 387 ARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYSE 436
>gi|327265107|ref|XP_003217350.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Anolis
carolinensis]
Length = 427
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/439 (62%), Positives = 317/439 (72%), Gaps = 80/439 (18%)
Query: 54 QIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMD 113
Q V D + +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +
Sbjct: 20 QAVNDAT--PVPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSE 69
Query: 114 IERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQ 173
++ I +A+LGMD+LCQAKSGMGKTAVFVLATLQQ
Sbjct: 70 VQHECI------------------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQ 105
Query: 174 LETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 233
+E TD V VLVMCHTRELAFQISKEYERFSKYMS +KV VFFGGL I+KDE+ LK + P
Sbjct: 106 IEPTDGQVSVLVMCHTRELAFQISKEYERFSKYMSAVKVSVFFGGLSIKKDEDVLKKNCP 165
Query: 234 QIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMM 293
IVVGTPGRILALVRNK LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MM
Sbjct: 166 HIVVGTPGRILALVRNKTLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMM 225
Query: 294 FSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE 353
FSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK+ EKN+KLF+LLDVLE
Sbjct: 226 FSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDTEKNRKLFDLLDVLE 285
Query: 354 FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------- 404
FNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGMTQEERL +YQ+FKDF
Sbjct: 286 FNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVATNL 345
Query: 405 -------------------------------------KGLAITFASDENDAKILNNVQDR 427
KGLA+TF SDE+DAKILN+VQDR
Sbjct: 346 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDESDAKILNDVQDR 405
Query: 428 FDVSISELPDEIDLSTYIE 446
F+V+++ELP+EID+STYIE
Sbjct: 406 FEVNVAELPEEIDISTYIE 424
>gi|313221766|emb|CBY38854.1| unnamed protein product [Oikopleura dioica]
gi|313233364|emb|CBY24478.1| unnamed protein product [Oikopleura dioica]
Length = 422
Score = 534 bits (1376), Expect = e-149, Method: Compositional matrix adjust.
Identities = 285/459 (62%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAI 95
MAD +DLLDY++E+ E VA A D K+K+ KG YVSIHSSGFRDFLLKPE+LRAI
Sbjct: 1 MAD-EDLLDYDEEQAEETPVA--AVDE--KKKDGKGPGYVSIHSSGFRDFLLKPELLRAI 55
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
VDC E + V N +P+ AVLGMD+LCQ
Sbjct: 56 VDCG--------------FEHPSQVQNECIPQ------------------AVLGMDVLCQ 83
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSGMGKTAVFVLATLQQLE D NV V+VMCHTRELAFQISKEYERFSKYM ++KV VF
Sbjct: 84 AKSGMGKTAVFVLATLQQLEPVDGNVSVIVMCHTRELAFQISKEYERFSKYMDSMKVAVF 143
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD++ LK + P IVVGTPGRIL L+R+K L+L +KHF+LDECDKML+ L+MR
Sbjct: 144 FGGMPIEKDKKVLKENCPHIVVGTPGRILGLIRSKALSLKNVKHFVLDECDKMLDALDMR 203
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH KQVMMFSATLSKE+RPVCKKFM DPMEV++DDEAKLTLHGLQQHYVK
Sbjct: 204 RDVQEIFRQTPHEKQVMMFSATLSKEVRPVCKKFMQDPMEVFIDDEAKLTLHGLQQHYVK 263
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLF+LLD LEFNQVVIFVKSV RCIALSTLL EQNFPAV IHR M QEERL+
Sbjct: 264 IKENEKNRKLFDLLDALEFNQVVIFVKSVQRCIALSTLLKEQNFPAVDIHRAMNQEERLQ 323
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 324 RYQLFKNFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 383
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+F SDE DAK +VQDRF+V I+ELP+EID+STYIEGR
Sbjct: 384 SFVSDEEDAKTSQSVQDRFEVKITELPEEIDISTYIEGR 422
>gi|38372907|ref|NP_932099.2| ATP-dependent RNA helicase DDX39A [Mus musculus]
gi|61213001|sp|Q8VDW0.1|DX39A_MOUSE RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39
gi|18044894|gb|AAH20134.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Mus musculus]
gi|74181505|dbj|BAE30021.1| unnamed protein product [Mus musculus]
gi|74184027|dbj|BAE37049.1| unnamed protein product [Mus musculus]
gi|74207612|dbj|BAE40052.1| unnamed protein product [Mus musculus]
gi|74219249|dbj|BAE26758.1| unnamed protein product [Mus musculus]
gi|74226811|dbj|BAE27051.1| unnamed protein product [Mus musculus]
gi|148678969|gb|EDL10916.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Mus
musculus]
Length = 427
Score = 533 bits (1374), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/459 (60%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|354479467|ref|XP_003501931.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Cricetulus griseus]
Length = 427
Score = 533 bits (1373), Expect = e-149, Method: Compositional matrix adjust.
Identities = 276/459 (60%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMPQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|74192407|dbj|BAE43010.1| unnamed protein product [Mus musculus]
Length = 427
Score = 533 bits (1372), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLAT+QQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATMQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|55926219|ref|NP_446015.2| ATP-dependent RNA helicase DDX39A [Rattus norvegicus]
gi|61212312|sp|Q5U216.1|DX39A_RAT RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39; AltName: Full=Nuclear RNA helicase, DECD
variant of DEAD box family
gi|55562871|gb|AAH86328.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Rattus norvegicus]
gi|149037897|gb|EDL92257.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Rattus
norvegicus]
Length = 427
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/459 (60%), Positives = 329/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + V + A K K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ--VPQESTPAPPK-KDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|74204289|dbj|BAE39902.1| unnamed protein product [Mus musculus]
Length = 427
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDF+LKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFVLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|74205930|dbj|BAE23239.1| unnamed protein product [Mus musculus]
Length = 427
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ++KDF KGL
Sbjct: 326 LSRYQQYKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|126323154|ref|XP_001366378.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Monodelphis
domestica]
Length = 427
Score = 532 bits (1371), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/426 (63%), Positives = 311/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDE+ LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRNK LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNKSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CVALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDE DAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|301771296|ref|XP_002921018.1| PREDICTED: ATP-dependent RNA helicase DDX39-like [Ailuropoda
melanoleuca]
Length = 427
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 271/428 (63%), Positives = 313/428 (73%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 29 APKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 75
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VL
Sbjct: 76 -------------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRIL
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRIL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
ALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRP
Sbjct: 177 ALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDENDAKILN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+STYIE
Sbjct: 417 IDISTYIE 424
>gi|348511173|ref|XP_003443119.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oreochromis
niloticus]
Length = 427
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 280/458 (61%), Positives = 324/458 (70%), Gaps = 82/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDAL--AKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MA+ND +D E + E GA ++ A +KEVKG+YVSIHSSGFRDFLLKPE+LRA
Sbjct: 1 MAEND--VDNELLDYEEDEEPQGAPESATPAGKKEVKGSYVSIHSSGFRDFLLKPELLRA 58
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I+DC F +++ I +A+LGMDILC
Sbjct: 59 IIDCG--------FEHPSEVQHECI------------------------PQAILGMDILC 86
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM IK V
Sbjct: 87 QAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTIKAAV 146
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGGLPI+KDE+ LK + P IVVGTPGRILAL+RNK L+L +KHF+LDECDKMLEQL+M
Sbjct: 147 FFGGLPIKKDEDVLKKNCPHIVVGTPGRILALIRNKTLSLKNVKHFVLDECDKMLEQLDM 206
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR +PH KQVMMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 207 RRDVQDIFRITPHEKQVMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYC 266
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+ALS LL EQNFPA++IHRGM QEERL
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMVQEERL 326
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+YQ+FKDF KGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
ITF SDE DAK LN+VQDRF+V+++ELPDEID+S+YIE
Sbjct: 387 ITFVSDETDAKTLNDVQDRFEVNVAELPDEIDISSYIE 424
>gi|74216552|dbj|BAE37719.1| unnamed protein product [Mus musculus]
Length = 427
Score = 532 bits (1370), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 327/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLL+PE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLEPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|47085711|ref|NP_998142.1| ATP-dependent RNA helicase DDX39 [Danio rerio]
gi|28278325|gb|AAH44169.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|45709039|gb|AAH67555.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|118763876|gb|AAI28805.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|169154009|emb|CAQ13699.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39b [Danio rerio]
gi|182889946|gb|AAI65847.1| Ddx39b protein [Danio rerio]
Length = 427
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/436 (63%), Positives = 313/436 (71%), Gaps = 80/436 (18%)
Query: 59 GAGDALAK--QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
GA ++ A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++
Sbjct: 21 GAPESAAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQH 72
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
I +A+LGMDILCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 73 ECI------------------------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEP 108
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
D V VLVMCHTRELAFQISKEYERFSKYM +KV VFFGG+ I+KDE+ LK P IV
Sbjct: 109 VDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGMSIKKDEDVLKKSCPHIV 168
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILALVRNK LNL +KHF+LDECDKMLEQL+MRRDVQ+IFR +PH KQ MMFSA
Sbjct: 169 VGTPGRILALVRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSA 228
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
TLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK+NEKN+KLF+LLDVLEFNQ
Sbjct: 229 TLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDNEKNRKLFDLLDVLEFNQ 288
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
VVIFVKSV RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 289 VVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF SDE DAKILN+VQDRF+V
Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKILNDVQDRFEV 408
Query: 431 SISELPDEIDLSTYIE 446
+++ELP+EID+STYIE
Sbjct: 409 NVAELPEEIDISTYIE 424
>gi|41055604|ref|NP_957237.1| HLA-B associated transcript 1 [Danio rerio]
gi|32766427|gb|AAH55240.1| HLA-B associated transcript 1 [Danio rerio]
gi|126632630|emb|CAM56334.1| HLA-B associated transcript 1 [Danio rerio]
Length = 435
Score = 531 bits (1369), Expect = e-148, Method: Compositional matrix adjust.
Identities = 280/464 (60%), Positives = 325/464 (70%), Gaps = 86/464 (18%)
Query: 37 MADND---DLLDYEDEE-----NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
M +ND +LLDYE++E + + G +++ VKG+YVSIHSSGFRDFLLK
Sbjct: 1 MTENDVDNELLDYEEDEVDAGGAGDAGLGHSDGIISIRKEGVKGSYVSIHSSGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAIVDC F +++ I +A+L
Sbjct: 61 PELLRAIVDCG--------FEHPSEVQHECI------------------------PQAIL 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM
Sbjct: 89 GMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMP 148
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++KV VFFGGL I+KDEE LK +P +VVGTPGRILAL RNK LNL +KHFILDECDKM
Sbjct: 149 SVKVAVFFGGLSIKKDEEVLKKESPHVVVGTPGRILALSRNKSLNLRHIKHFILDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHG
Sbjct: 209 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHR M
Sbjct: 269 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAM 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
Q+ERL +YQ+FKDF
Sbjct: 329 PQDERLARYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDA+ LN+VQDRF+V+ISELP+EID+S+YIE
Sbjct: 389 GTKGLAITFVSDENDARTLNDVQDRFEVNISELPEEIDISSYIE 432
>gi|221131178|ref|XP_002164853.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Hydra
magnipapillata]
Length = 433
Score = 531 bits (1368), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/460 (60%), Positives = 319/460 (69%), Gaps = 81/460 (17%)
Query: 37 MADNDD---LLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MAD D + DYE++ + E DG + +KEVKG YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MADVQDEEFIPDYEEQSDNEAAAEDGVQATDSVKKEVKGTYVSIHSSGFRDFLLKPELLR 60
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMDI+
Sbjct: 61 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDIV 88
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE DS V VLVM HTRELAFQ+SKEYERFSKY+ N KV
Sbjct: 89 CQAKSGMGKTAVFVLATLQQLEPVDSQVSVLVMSHTRELAFQVSKEYERFSKYLPNTKVA 148
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL ++KDE+ LKT+ P IVVGTPGRILAL R+K LNL +KHFILDECDKMLEQL+
Sbjct: 149 VFFGGLSVKKDEQTLKTNCPHIVVGTPGRILALARDKVLNLKHVKHFILDECDKMLEQLD 208
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATL+KE+R VCKKFM DPMEVYVDDE KLTLHGL QHY
Sbjct: 209 MRRDVQEIFRMTPHEKQVMMFSATLNKEMRLVCKKFMQDPMEVYVDDETKLTLHGLTQHY 268
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
KLK+NEKN+KLF+LLD LEFNQV+IFVKSV RCIALS LL EQNFPA++IHR M QEER
Sbjct: 269 CKLKDNEKNRKLFDLLDALEFNQVIIFVKSVQRCIALSNLLVEQNFPAIAIHRSMPQEER 328
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+ +Y++FKDF KGL
Sbjct: 329 ISRYRQFKDFQKRILVATNLFGRGMDIERVNIVVNYDMPEDSDTYLHRVARAGRFGTKGL 388
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
AI+F SDE DAK+LN VQDRF+V++SELP EID+STYIEG
Sbjct: 389 AISFVSDEEDAKVLNGVQDRFEVNVSELPAEIDVSTYIEG 428
>gi|62858405|ref|NP_001016000.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus (Silurana)
tropicalis]
gi|89271292|emb|CAJ82673.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|89271293|emb|CAJ82681.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|89271296|emb|CAJ82702.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Xenopus (Silurana)
tropicalis]
gi|187469409|gb|AAI67122.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
gi|213624204|gb|AAI70784.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
gi|213627133|gb|AAI70782.1| hypothetical protein LOC548754 [Xenopus (Silurana) tropicalis]
Length = 427
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 278/452 (61%), Positives = 323/452 (71%), Gaps = 81/452 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE E++ Q A+ A A +KEVKG+YVSIHSSGFRDFLLKPE+LR+IVDC
Sbjct: 8 NELLDYE-EDDEPQAPAETA--APIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCG- 63
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+LGMDILCQAKSGM
Sbjct: 64 -------FEHPSEVQHECI------------------------PQAILGMDILCQAKSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQ E + V VLVMCHTRELAFQISKEYERFSKYM +KV VFFGGL
Sbjct: 93 GKTAVFVLATLQQTEAVEGQVTVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLS 152
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+KDE+ ++ P IVVGTPGRILALVR+K LNL +KHF+LDECDKMLEQL+MRRDVQE
Sbjct: 153 IKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQE 212
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++E
Sbjct: 213 IFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE 272
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA++IHR M+QEERL +YQ+F
Sbjct: 273 KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIAIHRNMSQEERLSRYQQF 332
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
KDF KGLAITF SD
Sbjct: 333 KDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 392
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
E DAKILN+VQDRF+V++ ELPDEID+STYIE
Sbjct: 393 EEDAKILNDVQDRFEVNVGELPDEIDISTYIE 424
>gi|426228876|ref|XP_004008522.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Ovis aries]
Length = 427
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/426 (63%), Positives = 312/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHP 67
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ H +A+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 68 SEVQ---HECI------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|74214685|dbj|BAE31182.1| unnamed protein product [Mus musculus]
Length = 427
Score = 531 bits (1367), Expect = e-148, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 326/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VD E KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDHETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|348542184|ref|XP_003458566.1| PREDICTED: spliceosome RNA helicase DDX39B-like [Oreochromis
niloticus]
Length = 435
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 280/459 (61%), Positives = 321/459 (69%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEE--NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
M +ND +LLDYED+E GA D +++ VKG+YVSIHSSGFRDFLLKPE+
Sbjct: 1 MTENDVDNELLDYEDDEVEAGGAGDVGGASDVSIRKEGVKGSYVSIHSSGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC ++ P + H +A+LGMD
Sbjct: 61 LRAIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMD 88
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM +K
Sbjct: 89 VLCQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPTVK 148
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGLPI+KDEE LK +P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQ
Sbjct: 149 VAVFFGGLPIKKDEEVLKKDSPHIVVGTPGRILALTRNKTLNLRHMKHFILDECDKMLEQ 208
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTL+GLQQ
Sbjct: 209 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLNGLQQ 268
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK+NEKN+KLF+LLD LEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QE
Sbjct: 269 YYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQRCVALAQLLVEQNFPAIAIHRGMPQE 328
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 329 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 388
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
GLAITF SDE DA+ LN+VQDRF+V+I ELP+EID+S+Y
Sbjct: 389 GLAITFVSDEGDARTLNDVQDRFEVNIGELPEEIDISSY 427
>gi|3132829|gb|AAC16391.1| nuclear RNA helicase [Rattus norvegicus]
Length = 427
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 277/459 (60%), Positives = 328/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + V + A K K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ--VPQESTPAPPK-KDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQIS EYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISTEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|335282778|ref|XP_003123418.2| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 1 [Sus
scrofa]
gi|335282780|ref|XP_003354153.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like isoform 2 [Sus
scrofa]
Length = 427
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/426 (63%), Positives = 312/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHP 67
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ H +A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 68 SEVQ---HECI------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|77736449|ref|NP_001029924.1| ATP-dependent RNA helicase DDX39A [Bos taurus]
gi|59858465|gb|AAX09067.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 isoform 1 [Bos taurus]
gi|296485978|tpg|DAA28093.1| TPA: DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Bos taurus]
Length = 427
Score = 530 bits (1366), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/426 (63%), Positives = 312/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHP 67
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ H +A+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 68 SEVQ---HECI------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|73986746|ref|XP_533895.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Canis lupus
familiaris]
gi|395850755|ref|XP_003797941.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Otolemur garnettii]
gi|410950598|ref|XP_003981991.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Felis catus]
Length = 427
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/426 (63%), Positives = 312/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|395512966|ref|XP_003760703.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Sarcophilus harrisii]
Length = 427
Score = 530 bits (1365), Expect = e-148, Method: Compositional matrix adjust.
Identities = 270/426 (63%), Positives = 311/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E D V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDE+ LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRNK LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNKSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CVALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDE DAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEGDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|344244550|gb|EGW00654.1| ATP-dependent RNA helicase DDX39 [Cricetulus griseus]
Length = 424
Score = 529 bits (1363), Expect = e-147, Method: Compositional matrix adjust.
Identities = 274/457 (59%), Positives = 325/457 (71%), Gaps = 84/457 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMPQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STY
Sbjct: 386 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTY 422
>gi|355703230|gb|EHH29721.1| ATP-dependent RNA helicase DDX39 [Macaca mulatta]
Length = 477
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/461 (60%), Positives = 327/461 (70%), Gaps = 84/461 (18%)
Query: 35 SKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
S MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+
Sbjct: 49 SIMAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPEL 105
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC E + V + +P+ A+LGMD
Sbjct: 106 LRAIVDCG--------------FEHPSEVQHECIPQ------------------AILGMD 133
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++K
Sbjct: 134 VLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVK 193
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQ
Sbjct: 194 VSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQ 253
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ
Sbjct: 254 LDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQ 313
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QE
Sbjct: 314 YYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQE 373
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 374 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 433
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 434 GLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 474
>gi|431898055|gb|ELK06762.1| ATP-dependent RNA helicase DDX39 [Pteropus alecto]
Length = 484
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 271/436 (62%), Positives = 313/436 (71%), Gaps = 78/436 (17%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
A +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 78 APAESTPAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC------------------ 119
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
++ P + H +A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 120 -----GFEHPSEVQ---HECI------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP 165
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
+ V VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 166 VNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 225
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSA
Sbjct: 226 VGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSA 285
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
TLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQ
Sbjct: 286 TLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ 345
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
VVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 346 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 405
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF SDENDAKILN+VQDRF+V
Sbjct: 406 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 465
Query: 431 SISELPDEIDLSTYIE 446
+++ELP+EID+STYIE
Sbjct: 466 NVAELPEEIDISTYIE 481
>gi|348552098|ref|XP_003461865.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Cavia porcellus]
Length = 427
Score = 529 bits (1362), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/436 (61%), Positives = 313/436 (71%), Gaps = 78/436 (17%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
A + +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++
Sbjct: 21 APAESTPVLPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQH 72
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
I +A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 73 ECI------------------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP 108
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
+ V VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 109 VNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVV 168
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSA
Sbjct: 169 VGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSA 228
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
TL KE+RPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQ
Sbjct: 229 TLGKEVRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ 288
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
VVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 289 VVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 348
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF SDENDAKILN+VQDRF+V
Sbjct: 349 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 408
Query: 431 SISELPDEIDLSTYIE 446
+++ELP+EID+STYIE
Sbjct: 409 NVAELPEEIDISTYIE 424
>gi|213514236|ref|NP_001133080.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|197631861|gb|ACH70654.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Salmo salar]
Length = 427
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/458 (61%), Positives = 323/458 (70%), Gaps = 82/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGD--ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MA+ND +D E + E GA + A A +KEVKG+YVSIHSSGFRDFLLKPE+LRA
Sbjct: 1 MAEND--VDNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRA 58
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
IVDC E + V + +P+ A+LGMDILC
Sbjct: 59 IVDCG--------------FEHPSEVQHECIPQ------------------AILGMDILC 86
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM +K V
Sbjct: 87 QAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAV 146
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGGL I+KDE+ LK + P IVVGTPGRILAL+RNK LNL +KHF+LDECDKMLEQL+M
Sbjct: 147 FFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDM 206
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 207 RRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYC 266
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+ALS LL EQNFPA++IHRGM QEERL
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERL 326
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+YQ+FKDF KGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
+TF SDE DAK LN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 387 VTFVSDETDAKTLNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|148231835|ref|NP_001079623.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Xenopus laevis]
gi|28278799|gb|AAH45239.1| MGC53693 protein [Xenopus laevis]
gi|31580806|gb|AAP51031.1| DECD-box RNA helicase [Xenopus laevis]
gi|76779487|gb|AAI06295.1| MGC53693 protein [Xenopus laevis]
Length = 427
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/452 (61%), Positives = 322/452 (71%), Gaps = 81/452 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE E++ Q A+ A +KEVKG+YVSIHSSGFRDFLLKPE+LR+IVDC
Sbjct: 8 NELLDYE-EDDEPQAPAETA--VPIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCG- 63
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+LGMDILCQAKSGM
Sbjct: 64 -------FEHPSEVQHECI------------------------PQAILGMDILCQAKSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM +KV VFFGGL
Sbjct: 93 GKTAVFVLATLQQIEAVEGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKVAVFFGGLS 152
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+KDE+ ++ P IVVGTPGRILALVR+K LNL +KHF+LDECDKMLEQL+MRRDVQE
Sbjct: 153 IKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQE 212
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++E
Sbjct: 213 IFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE 272
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHR M+QEERL +YQ+F
Sbjct: 273 KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQF 332
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
KDF KGLAITF SD
Sbjct: 333 KDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 392
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
E DAKILN+VQDRF+V++ ELPDEID+STYIE
Sbjct: 393 EEDAKILNDVQDRFEVNVGELPDEIDISTYIE 424
>gi|281353060|gb|EFB28644.1| hypothetical protein PANDA_009904 [Ailuropoda melanoleuca]
Length = 422
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/426 (63%), Positives = 311/426 (73%), Gaps = 78/426 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 29 APKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 75
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VL
Sbjct: 76 -------------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRIL
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRIL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
ALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRP
Sbjct: 177 ALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDENDAKILN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTY 444
ID+STY
Sbjct: 417 IDISTY 422
>gi|395828829|ref|XP_003787566.1| PREDICTED: spliceosome RNA helicase DDX39B-like isoform 2 [Otolemur
garnettii]
Length = 431
Score = 528 bits (1361), Expect = e-147, Method: Compositional matrix adjust.
Identities = 291/462 (62%), Positives = 330/462 (71%), Gaps = 86/462 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +++LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQSILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHT+ELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTQELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFF---GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
VFF GGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLE
Sbjct: 147 VFFVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 206
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQ
Sbjct: 207 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 266
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 267 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 326
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EERL +YQ+FKDF
Sbjct: 327 EERLSRYQQFKDFQRRILVATNLFGHGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 386
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+ +YIE
Sbjct: 387 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDIFSYIE 428
>gi|402904532|ref|XP_003915097.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Papio anubis]
Length = 555
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/459 (60%), Positives = 326/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 129 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 185
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 186 AIVDC--------------GFEHPSEVQHECIPQ------------------AILGMDVL 213
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 214 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 273
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 274 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 333
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 334 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 393
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 394 VKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 453
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 454 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 513
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 514 AITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 552
>gi|344283235|ref|XP_003413378.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Loxodonta
africana]
Length = 427
Score = 528 bits (1360), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/426 (63%), Positives = 311/426 (73%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTA FVLATLQQ+E + V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAGFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATL+KEIRPVC
Sbjct: 179 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLNKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|213511506|ref|NP_001134851.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|209736554|gb|ACI69146.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 427
Score = 528 bits (1359), Expect = e-147, Method: Compositional matrix adjust.
Identities = 280/458 (61%), Positives = 322/458 (70%), Gaps = 82/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGD--ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MA+ND D E + E GA + A A +KEVKG+YVSIHSSGFRDFLLKPE+LRA
Sbjct: 1 MAEND--ADNELLDYEEDEEPQGAPETAAPAGKKEVKGSYVSIHSSGFRDFLLKPELLRA 58
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
IVDC E + V + +P+ A+LGMDILC
Sbjct: 59 IVDCG--------------FEHPSEVQHECIPQ------------------AILGMDILC 86
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYM +K V
Sbjct: 87 QAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPTVKAAV 146
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGGL I+KDE+ LK + P IVVGTPGRILAL+RNK LNL +KHF+LDECDKMLEQL+M
Sbjct: 147 FFGGLSIKKDEDVLKKNCPHIVVGTPGRILALIRNKTLNLKNVKHFVLDECDKMLEQLDM 206
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 207 RRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYC 266
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+ALS LL EQNFPA++IHRGM QEERL
Sbjct: 267 KLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAIHRGMAQEERL 326
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+YQ+FKDF KGLA
Sbjct: 327 SRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLA 386
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
+TF SDE DAK LN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 387 VTFVSDETDAKTLNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|147905268|ref|NP_001080733.1| nuclear RNA helicase [Xenopus laevis]
gi|28280049|gb|AAH45125.1| Ddx39-prov protein [Xenopus laevis]
Length = 427
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 276/452 (61%), Positives = 323/452 (71%), Gaps = 81/452 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE E++ Q A+ A A +KEVKG+YVSIHSSGFRDFLLKPE+LR+IVDC
Sbjct: 8 NELLDYE-EDDEPQAPAETA--APIARKEVKGSYVSIHSSGFRDFLLKPELLRSIVDCG- 63
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+LGMDILCQAKSGM
Sbjct: 64 -------FEHPSEVQHECI------------------------PQAILGMDILCQAKSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++V VFFGGL
Sbjct: 93 GKTAVFVLATLQQIEAVEGQVSVLVMCHTRELAFQISKEYERFSKYMPTVEVAVFFGGLS 152
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+KDE+ ++ P IVVGTPGRILALVR+K LNL +KHF+LDECDKMLEQL+MRRDVQE
Sbjct: 153 IKKDEDTIRKSCPHIVVGTPGRILALVRSKILNLKNVKHFVLDECDKMLEQLDMRRDVQE 212
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++E
Sbjct: 213 IFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSE 272
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHR M+QEERL +YQ+F
Sbjct: 273 KNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLIEQNFPAIAIHRNMSQEERLSRYQQF 332
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
KDF KGLAITF SD
Sbjct: 333 KDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 392
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
E DAKILN+VQDRF+V++ ELP+EID+STYIE
Sbjct: 393 EEDAKILNDVQDRFEVNVGELPEEIDISTYIE 424
>gi|194377854|dbj|BAG63290.1| unnamed protein product [Homo sapiens]
Length = 470
Score = 527 bits (1358), Expect = e-147, Method: Compositional matrix adjust.
Identities = 277/466 (59%), Positives = 329/466 (70%), Gaps = 84/466 (18%)
Query: 30 SSFPHSKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFL 86
SS+ +S MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFL
Sbjct: 37 SSWDYSIMAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFL 93
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+LRAIVDC ++ P + H +A
Sbjct: 94 LKPELLRAIVDC-----------------------GFEHPSEVQ---HECI------PQA 121
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKY
Sbjct: 122 ILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKY 181
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECD
Sbjct: 182 MPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECD 241
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KML QL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTL
Sbjct: 242 KMLGQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTL 301
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHR
Sbjct: 302 HGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHR 361
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
GM QEERL +YQ+FKDF
Sbjct: 362 GMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 421
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 422 RFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 467
>gi|221221068|gb|ACM09195.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|223647064|gb|ACN10290.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
gi|223672933|gb|ACN12648.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 427
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/428 (62%), Positives = 308/428 (71%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 29 AGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 75
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 76 -------------------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IVVGTPGRIL
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRIL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+RNK LNL +KHF+LDECDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATLSKEIRP
Sbjct: 177 ALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLA+TF SDE DAK LN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+STYIE
Sbjct: 417 IDISTYIE 424
>gi|355683284|gb|AER97074.1| DEAD box polypeptide 39 [Mustela putorius furo]
Length = 427
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/426 (63%), Positives = 310/426 (72%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVSGQVSVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEILKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 179 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM PMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 239 RKFMQXPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|224587698|gb|ACN58701.1| ATP-dependent RNA helicase DDX39 [Salmo salar]
Length = 422
Score = 527 bits (1357), Expect = e-147, Method: Compositional matrix adjust.
Identities = 269/428 (62%), Positives = 308/428 (71%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 24 AGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 70
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 71 -------------------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 111
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +K VFFGGL I+KDE+ LK + P IVVGTPGRIL
Sbjct: 112 VMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGLSIKKDEDVLKKNCPHIVVGTPGRIL 171
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+RNK LNL +KHF+LDECDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATLSKEIRP
Sbjct: 172 ALIRNKTLNLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRP 231
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 232 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 291
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 292 QRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 351
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLA+TF SDE DAK LN+VQDRF+V+++ELP+E
Sbjct: 352 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEE 411
Query: 439 IDLSTYIE 446
ID+STYIE
Sbjct: 412 IDISTYIE 419
>gi|427789657|gb|JAA60280.1| Putative spliceosome rna helicase ddx39b [Rhipicephalus pulchellus]
Length = 421
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 285/458 (62%), Positives = 330/458 (72%), Gaps = 83/458 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADND LLDYEDEE+ EQ V G+ + + K+ G YVSIHSSGFRDFLLKPE+LRAIV
Sbjct: 1 MADND-LLDYEDEEDQEQTV----GETIPEVKKPTGGYVSIHSSGFRDFLLKPELLRAIV 55
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMDILCQA
Sbjct: 56 DCG--------------FEHPSEVQHECIPQ------------------AILGMDILCQA 83
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQL+ + V VLVMCHTRELAFQISKEYERFSKY+ +++VGVFF
Sbjct: 84 KSGMGKTAVFVLATLQQLDPVEGQVSVLVMCHTRELAFQISKEYERFSKYLPSVRVGVFF 143
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I DE+ LK+ P +VVGTPGR+LALVR++KL L +KHF+LDECDKMLEQL+MRR
Sbjct: 144 GGMNITNDEKVLKSSCPHVVVGTPGRVLALVRSRKLQLKHIKHFVLDECDKMLEQLDMRR 203
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSK+IRPVC KFM DPMEVYVDDEAKLTLHGLQQ+YVKL
Sbjct: 204 DVQEIFRTTPHEKQVMMFSATLSKDIRPVCLKFMQDPMEVYVDDEAKLTLHGLQQYYVKL 263
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
K+NEKN+KLFELLD+LEFNQVVIFVK+V RC+AL+ LL EQNFPA++IHR MTQEERL +
Sbjct: 264 KDNEKNRKLFELLDLLEFNQVVIFVKTVQRCMALAQLLVEQNFPAIAIHRAMTQEERLSR 323
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLA+T
Sbjct: 324 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVT 383
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDE DAK LN VQDRFDV+ISELPDEID+S+YIEGR
Sbjct: 384 FVSDEQDAKTLNEVQDRFDVNISELPDEIDISSYIEGR 421
>gi|21040371|ref|NP_005795.2| ATP-dependent RNA helicase DDX39A [Homo sapiens]
gi|301601639|ref|NP_001180420.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|297703837|ref|XP_002828833.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Pongo
abelii]
gi|397471066|ref|XP_003807128.1| PREDICTED: ATP-dependent RNA helicase DDX39A [Pan paniscus]
gi|426387515|ref|XP_004060212.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Gorilla
gorilla gorilla]
gi|426387519|ref|XP_004060214.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 3 [Gorilla
gorilla gorilla]
gi|61212932|sp|O00148.2|DX39A_HUMAN RecName: Full=ATP-dependent RNA helicase DDX39A; AltName: Full=DEAD
box protein 39; AltName: Full=Nuclear RNA helicase URH49
gi|12654373|gb|AAH01009.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [Homo sapiens]
gi|119604824|gb|EAW84418.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_d [Homo
sapiens]
gi|123980968|gb|ABM82313.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
gi|123995775|gb|ABM85489.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 [synthetic construct]
gi|383415013|gb|AFH30720.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|384944666|gb|AFI35938.1| ATP-dependent RNA helicase DDX39A [Macaca mulatta]
gi|410210478|gb|JAA02458.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
gi|410253028|gb|JAA14481.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
gi|410290144|gb|JAA23672.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A [Pan troglodytes]
Length = 427
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 325/459 (70%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 386 AITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
>gi|291237406|ref|XP_002738626.1| PREDICTED: HLA-B associated transcript 1-like [Saccoglossus
kowalevskii]
Length = 429
Score = 526 bits (1356), Expect = e-147, Method: Compositional matrix adjust.
Identities = 275/436 (63%), Positives = 312/436 (71%), Gaps = 81/436 (18%)
Query: 59 GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVN 118
G GD K+K+VKG YVSIHSSGFRDFLLKPE+LRAIVDC E +
Sbjct: 29 GDGD---KKKDVKGNYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPS 71
Query: 119 IVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD 178
V + +P+ A+L MD+LCQAKSGMGKTAVFVLATLQQ+E D
Sbjct: 72 EVQHECIPQ------------------AILSMDVLCQAKSGMGKTAVFVLATLQQIEPVD 113
Query: 179 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238
V VLV+CHTRELAFQI+KEYERFSKYM IKVGVFFGG+ I+KDE+ LK + P IVVG
Sbjct: 114 GQVSVLVLCHTRELAFQIAKEYERFSKYMPTIKVGVFFGGINIKKDEQTLKNNCPHIVVG 173
Query: 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
TPGR+LAL RNK L+L +KHFILDECDKMLEQL+MRRDVQ+IFR +PH KQVMMFSATL
Sbjct: 174 TPGRLLALGRNKTLSLKHVKHFILDECDKMLEQLDMRRDVQDIFRQTPHEKQVMMFSATL 233
Query: 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVV 358
SK+IRP+CKKFM DPMEVYVDDE KLTLHGLQQ+Y KLK+NEKN+KLF+LLDVLEFNQVV
Sbjct: 234 SKDIRPICKKFMQDPMEVYVDDETKLTLHGLQQYYCKLKDNEKNRKLFDLLDVLEFNQVV 293
Query: 359 IFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------- 404
IFVKSV RCIALS LL EQNFPA++IHR M QEERL +YQ+FKDF
Sbjct: 294 IFVKSVQRCIALSQLLVEQNFPAIAIHRAMNQEERLARYQQFKDFQKRILVATNLFGRGM 353
Query: 405 --------------------------------KGLAITFASDENDAKILNNVQDRFDVSI 432
KGLAITF SDENDAKILN VQDRF+V+I
Sbjct: 354 DIERVNIVFNYDMPEDSNTYLHRVARAGRFGTKGLAITFVSDENDAKILNEVQDRFEVNI 413
Query: 433 SELPDEIDLSTYIEGR 448
ELPDEID+++YIE R
Sbjct: 414 GELPDEIDITSYIEQR 429
>gi|348520870|ref|XP_003447950.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oreochromis
niloticus]
Length = 427
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 268/428 (62%), Positives = 309/428 (72%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 29 ANKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 75
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 76 -------------------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +KV VFFGG+ I+KDEE LK + P IVVGTPGR L
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKVSVFFGGMAIKKDEEVLKKNCPHIVVGTPGRTL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+RNK L++ +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRP
Sbjct: 177 ALIRNKTLSVKNIKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 ARCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLA+TF SDE+DAK LN VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDESDAKTLNEVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+S+YIE
Sbjct: 417 IDISSYIE 424
>gi|198430623|ref|XP_002127634.1| PREDICTED: similar to HLA-B associated transcript 1 [Ciona
intestinalis]
Length = 424
Score = 526 bits (1355), Expect = e-147, Method: Compositional matrix adjust.
Identities = 272/423 (64%), Positives = 301/423 (71%), Gaps = 78/423 (18%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G YVSIHSSGFRDFLLKPE+LRAIVDC E + V N +P+
Sbjct: 34 GTYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQNECIPQ---- 75
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191
AVLGMD+LCQAKSGMGKTAVFVLATLQQLE D V VLVMCHTRE
Sbjct: 76 --------------AVLGMDVLCQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVMCHTRE 121
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK 251
LAFQISKEYERFSKYM IKV VFFGGLPI KD+ LK + P IVVGTPGR+LAL+R+K
Sbjct: 122 LAFQISKEYERFSKYMPTIKVAVFFGGLPITKDQTTLKNNCPHIVVGTPGRLLALIRSKS 181
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
L L +KHFILDECDKMLEQL+MRRDVQ+IFR +PH KQVMMFSATLSK+IRPVCKKFM
Sbjct: 182 LTLKNVKHFILDECDKMLEQLDMRRDVQDIFRLTPHEKQVMMFSATLSKDIRPVCKKFMQ 241
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
DPMEVYVDDEAKLTLHGLQQHYVKLK+NEKN+KLF+LLD LEFNQVVIFVKSV RC+AL+
Sbjct: 242 DPMEVYVDDEAKLTLHGLQQHYVKLKDNEKNRKLFDLLDALEFNQVVIFVKSVQRCMALA 301
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------- 404
LL EQNFPA+ IHR M QEERL +YQ FK+F
Sbjct: 302 QLLKEQNFPAIDIHRAMNQEERLSRYQLFKNFERRILVATNLFGRGMDIERVNIVFNYDM 361
Query: 405 -------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF SDE DAK LN+VQDRF+V+++ELPDEID+S YI
Sbjct: 362 PEDSDTYLHRVARAGRFGTKGLAITFVSDETDAKTLNDVQDRFEVNVTELPDEIDISAYI 421
Query: 446 EGR 448
EGR
Sbjct: 422 EGR 424
>gi|405952464|gb|EKC20273.1| Spliceosome RNA helicase BAT1 [Crassostrea gigas]
Length = 486
Score = 526 bits (1354), Expect = e-146, Method: Compositional matrix adjust.
Identities = 276/451 (61%), Positives = 320/451 (70%), Gaps = 84/451 (18%)
Query: 37 MADNDD---LLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MADN++ LLDYED+E + ADG GDA K K+VKG YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MADNENETELLDYEDDET--ETTADGTGDAPVK-KDVKGTYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+L MD+L
Sbjct: 58 AIVDCG--------------FEHPSEVQHECIPQ------------------AILSMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE D V VLV+ HTRELAFQISKEYERFSKYM+N+K+
Sbjct: 86 CQAKSGMGKTAVFVLATLQQLEPVDGQVSVLVLAHTRELAFQISKEYERFSKYMNNVKIA 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGG+ I+KDE+ LK + P I+VGTPGRILAL +K LNL +KHF+LDECDKML L+
Sbjct: 146 VFFGGMSIKKDEDVLKKNCPHIIVGTPGRILALCHSKVLNLKNVKHFVLDECDKMLAALD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR++PH KQVMMFSATLSKEIR VCK+FM DPMEVYVDD++KLTLHGLQQHY
Sbjct: 206 MRRDVQEIFRNTPHEKQVMMFSATLSKEIRAVCKRFMQDPMEVYVDDDSKLTLHGLQQHY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLFELLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHR MTQEER
Sbjct: 266 VKLKDNEKNRKLFELLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRAMTQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDE 438
AITF SDE DAK+LN VQ+RF+V+I+ELPDE
Sbjct: 386 AITFVSDETDAKVLNEVQERFEVNITELPDE 416
>gi|45360797|ref|NP_989072.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus (Silurana)
tropicalis]
gi|38174030|gb|AAH61280.1| HLA-B associated transcript 1 [Xenopus (Silurana) tropicalis]
Length = 428
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 291/459 (63%), Positives = 327/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDYED+E Q D A D K KE+KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAETDVDNELLDYEDDEVDNQAGVD-APDITVK-KEMKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMDIL
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDIL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK P IVVGTPGR+LAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLAIKKDEEVLKKSCPHIVVGTPGRMLALARNKTLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLD+LEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM+QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMSQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDE DAKILN VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDEGDAKILNEVQDRFEVNISELPDEIDISSYIE 425
>gi|47940414|gb|AAH71505.1| Ddx39a protein [Danio rerio]
Length = 427
Score = 525 bits (1353), Expect = e-146, Method: Compositional matrix adjust.
Identities = 270/430 (62%), Positives = 310/430 (72%), Gaps = 78/430 (18%)
Query: 63 ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFN 122
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC E + V +
Sbjct: 27 ATTGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQH 72
Query: 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY 182
+P+ A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V
Sbjct: 73 ECIPQ------------------AILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVS 114
Query: 183 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGR 242
VLVMCHTRELAFQISKEYERFSKYMS++K FFGG+ I+KDE+ LK + P IVVGTPGR
Sbjct: 115 VLVMCHTRELAFQISKEYERFSKYMSSVKCAAFFGGMSIKKDEDVLKKNCPHIVVGTPGR 174
Query: 243 ILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302
ILAL RNK L L +KHF+LDECDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATLSKEI
Sbjct: 175 ILALSRNKTLTLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEI 234
Query: 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVK 362
RPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVK
Sbjct: 235 RPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVK 294
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------ 404
SV RC+ALS LL EQNFPA++IHRGMTQEERL +YQ+FKDF
Sbjct: 295 SVPRCVALSQLLVEQNFPAIAIHRGMTQEERLSRYQQFKDFQRRILVATNLFGRGMDIER 354
Query: 405 ----------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KGLA+ F SDE DAKILN+VQDRF+V+++ELP
Sbjct: 355 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVIFVSDETDAKILNDVQDRFEVNVAELP 414
Query: 437 DEIDLSTYIE 446
+EID+STYIE
Sbjct: 415 EEIDISTYIE 424
>gi|10439505|dbj|BAB15509.1| unnamed protein product [Homo sapiens]
Length = 461
Score = 525 bits (1352), Expect = e-146, Method: Compositional matrix adjust.
Identities = 275/461 (59%), Positives = 326/461 (70%), Gaps = 84/461 (18%)
Query: 35 SKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
S MA+ D DLLDY++EE + +K++KG++VSIHSSGFRDFLLKPE+
Sbjct: 33 SIMAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSHVSIHSSGFRDFLLKPEL 89
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC ++ P + H +A+LGMD
Sbjct: 90 LRAIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMD 117
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++K
Sbjct: 118 VLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVK 177
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQ
Sbjct: 178 VSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQ 237
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ
Sbjct: 238 LDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQ 297
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QE
Sbjct: 298 YYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQE 357
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 358 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 417
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 418 GLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 458
>gi|148228466|ref|NP_001087845.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B [Xenopus laevis]
gi|51950262|gb|AAH82368.1| MGC81606 protein [Xenopus laevis]
Length = 428
Score = 523 bits (1348), Expect = e-146, Method: Compositional matrix adjust.
Identities = 290/459 (63%), Positives = 327/459 (71%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDYED++ Q D A D K KE+KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAETDVDNELLDYEDDDVDNQAGVD-APDITVK-KEMKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMDIL
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDIL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK P IVVGTPGR+LAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLAIKKDEEVLKKSCPHIVVGTPGRMLALARNKTLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLD+LEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM+QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDLLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMSQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 327 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDE DAKILN VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFVSDEGDAKILNEVQDRFEVNISELPDEIDISSYIE 425
>gi|403302191|ref|XP_003941746.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 1 [Saimiri
boliviensis boliviensis]
Length = 427
Score = 523 bits (1347), Expect = e-146, Method: Compositional matrix adjust.
Identities = 264/426 (61%), Positives = 310/426 (72%), Gaps = 78/426 (18%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 31 KKDMKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------- 75
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 76 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ +L +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC
Sbjct: 179 VRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQHYVKL+++EKN+KLF+LLDVLEFNQV+IFVKSV R
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQHYVKLRDSEKNRKLFDLLDVLEFNQVIIFVKSVQR 298
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 299 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 358
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLAITF SDENDAK LN+VQDRF+V+++ELP+EID
Sbjct: 359 FNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKTLNDVQDRFEVNVAELPEEID 418
Query: 441 LSTYIE 446
+STYIE
Sbjct: 419 ISTYIE 424
>gi|1905998|gb|AAB50231.1| nuclear RNA helicase [Homo sapiens]
Length = 427
Score = 523 bits (1346), Expect = e-146, Method: Compositional matrix adjust.
Identities = 274/459 (59%), Positives = 326/459 (71%), Gaps = 84/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC +E + V + +P+ A+LGMD+L
Sbjct: 58 AIVDCG--------------LEHPSEVQHECIPQ------------------AILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE +K + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVMKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 326 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARGGRFGTKGL 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDR +V+++ELP+EID+STYIE
Sbjct: 386 AITFVSDENDAKILNHVQDRCEVNVAELPEEIDISTYIE 424
>gi|355755539|gb|EHH59286.1| ATP-dependent RNA helicase DDX39, partial [Macaca fascicularis]
Length = 465
Score = 523 bits (1346), Expect = e-145, Method: Compositional matrix adjust.
Identities = 274/460 (59%), Positives = 325/460 (70%), Gaps = 84/460 (18%)
Query: 34 HSKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPE 90
+S MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE
Sbjct: 41 YSIMAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPE 97
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAIVDC ++ P + H +A+LGM
Sbjct: 98 LLRAIVDC-----------------------GFEHPSEVQ---HECI------PQAILGM 125
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++
Sbjct: 126 DVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSV 185
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLE
Sbjct: 186 KVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLE 245
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQ
Sbjct: 246 QLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQ 305
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM Q
Sbjct: 306 QYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQ 365
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EERL +YQ+FKDF
Sbjct: 366 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 425
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STY
Sbjct: 426 KGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTY 465
>gi|410917332|ref|XP_003972140.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Takifugu
rubripes]
Length = 427
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/428 (62%), Positives = 309/428 (72%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC E + V +
Sbjct: 29 ANKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHEC 74
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+P+ A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 75 IPQ------------------AILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +KV VFFGGL I+KDEE LK + P I+VGTPGRI
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKVSVFFGGLTIKKDEEVLKKNCPHIIVGTPGRIR 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+ K L+L +KHF+LDECDKMLEQL+MR DVQEIFR +PH KQVMMFSATLSKE+RP
Sbjct: 177 ALILQKSLSLKNIKHFVLDECDKMLEQLDMRGDVQEIFRMTPHEKQVMMFSATLSKEVRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVK+V
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKTV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDENDAKILN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+S+YIE
Sbjct: 417 IDISSYIE 424
>gi|432843030|ref|XP_004065549.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Oryzias latipes]
Length = 427
Score = 521 bits (1343), Expect = e-145, Method: Compositional matrix adjust.
Identities = 268/428 (62%), Positives = 309/428 (72%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC E + V +
Sbjct: 29 AGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHEC 74
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+P+ A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 75 IPQ------------------AILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM ++KV VFFGG+ I+ +E+ LK + P IVVGTPGR L
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGMAIKNNEDTLKKNCPHIVVGTPGRTL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+RNK L++ +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRP
Sbjct: 177 ALIRNKTLSVKNIKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 NRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDE DAK LN VQDRF+V+++ELPDE
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEVDAKTLNEVQDRFEVNVAELPDE 416
Query: 439 IDLSTYIE 446
ID+S+YIE
Sbjct: 417 IDISSYIE 424
>gi|225708116|gb|ACO09904.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
Length = 427
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 266/428 (62%), Positives = 305/428 (71%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 29 AGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI----- 75
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 76 -------------------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +K VFFGG+ I+KDEE LK + P IVVGTPGRIL
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKNCPHIVVGTPGRIL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL RNK L+L +KHF+LDECDKMLE L+MRRDVQ+IFR +PH KQ MMFSATLSKEIRP
Sbjct: 177 ALSRNKTLSLKNVKHFVLDECDKMLEALDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCVALSQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLA+TF SDE DAK LN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+S YIE
Sbjct: 417 IDISPYIE 424
>gi|60594464|pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 520 bits (1338), Expect = e-145, Method: Compositional matrix adjust.
Identities = 269/414 (64%), Positives = 299/414 (72%), Gaps = 78/414 (18%)
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
SSGFRDFLLKPE+LRAIVDC ++ P + H
Sbjct: 7 SSGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQ---HECI- 39
Query: 139 AGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISK
Sbjct: 40 -----PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 94
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +K
Sbjct: 95 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
HFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQN
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA++IHRGM QEERL +YQ+FKDF
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 388
>gi|225707666|gb|ACO09679.1| ATP-dependent RNA helicase DDX39 [Osmerus mordax]
Length = 427
Score = 519 bits (1337), Expect = e-145, Method: Compositional matrix adjust.
Identities = 267/428 (62%), Positives = 305/428 (71%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC E + V +
Sbjct: 29 AGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHEC 74
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+P+ A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 75 IPQ------------------AILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +K VFFGG+ I+KDEE LK P IVVGTPGRIL
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKAAVFFGGMAIKKDEEVLKKSCPHIVVGTPGRIL 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL RNK L+L KHF+LDECDKMLE L+MRRDVQ+IFR +PH KQ MMFSATLSK+IRP
Sbjct: 177 ALSRNKTLSLKNAKHFVLDECDKMLEALDMRRDVQDIFRLTPHEKQCMMFSATLSKDIRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV
Sbjct: 237 VCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 297 QRCVALSQLLVEQNFPAIAIHRGMNQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLA+TF SDE DAK LN+VQDRF+V+++ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNDVQDRFEVNVAELPEE 416
Query: 439 IDLSTYIE 446
ID+STYIE
Sbjct: 417 IDISTYIE 424
>gi|60594465|pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 517 bits (1332), Expect = e-144, Method: Compositional matrix adjust.
Identities = 268/415 (64%), Positives = 298/415 (71%), Gaps = 78/415 (18%)
Query: 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
H SGFRDFLLKPE+LRAIVDC ++ P + H
Sbjct: 5 HMSGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQ---HECI 38
Query: 138 RAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQIS
Sbjct: 39 ------PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 92
Query: 198 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
KEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +
Sbjct: 93 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 152
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHFILDE DKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++
Sbjct: 153 KHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 212
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQ
Sbjct: 213 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 272
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 273 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDT 332
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 333 YLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 387
>gi|195999078|ref|XP_002109407.1| conserved hypothetical protein [Trichoplax adhaerens]
gi|190587531|gb|EDV27573.1| conserved hypothetical protein [Trichoplax adhaerens]
Length = 425
Score = 516 bits (1330), Expect = e-144, Method: Compositional matrix adjust.
Identities = 274/457 (59%), Positives = 320/457 (70%), Gaps = 81/457 (17%)
Query: 37 MADND-DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
MA+ D +LLDY++EEN + A KEVKG+YVSIHSSGFRDFLLKPE+LRAI
Sbjct: 1 MAEVDHELLDYDEEENDAAEELESA--TTGNNKEVKGSYVSIHSSGFRDFLLKPELLRAI 58
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
VDC + H A +A+LGMD++CQ
Sbjct: 59 VDCG--------------------------------FEHPSAVQHECIPQAILGMDVICQ 86
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSGMGKTAVFVLATLQQL+ D+ V VLV+CHTRELAFQISKEY+RFSKYM N+KV VF
Sbjct: 87 AKSGMGKTAVFVLATLQQLDPVDNEVSVLVLCHTRELAFQISKEYDRFSKYMDNVKVAVF 146
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+ I+KD+ LK+ P IVVGTPGR+LALVR K LNL KHFILDECDKMLEQL+MR
Sbjct: 147 FGGINIKKDQATLKSSCPHIVVGTPGRMLALVREKSLNLKNCKHFILDECDKMLEQLDMR 206
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDD+ KLTLHGL+QHYVK
Sbjct: 207 RDVQEIFRMTPHQKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDDTKLTLHGLRQHYVK 266
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LK++EKN+KLF+LLD+LEFNQV+IFVKSV RC+AL+ LL EQNFPA+SIHRGM+QE+RLK
Sbjct: 267 LKDHEKNRKLFDLLDILEFNQVIIFVKSVQRCVALTQLLVEQNFPAISIHRGMSQEDRLK 326
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
Y EFK+F+ KGLA+
Sbjct: 327 HYGEFKNFNKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAV 386
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
TF S + DAKILN VQDRF+VS+ ELP+ ID++TYIE
Sbjct: 387 TFVSSQEDAKILNEVQDRFEVSVGELPEVIDVTTYIE 423
>gi|61679617|pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 516 bits (1328), Expect = e-143, Method: Compositional matrix adjust.
Identities = 267/412 (64%), Positives = 297/412 (72%), Gaps = 78/412 (18%)
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
SSGFRDFLLKPE+LRAIVDC ++ P + H
Sbjct: 7 SSGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQ---HECI- 39
Query: 139 AGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISK
Sbjct: 40 -----PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 94
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +K
Sbjct: 95 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
HFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQN
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA++IHRGM QEERL +YQ+FKDF
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 386
>gi|393906277|gb|EJD74236.1| spliceosome RNA helicase BAT1 [Loa loa]
Length = 426
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 270/456 (59%), Positives = 311/456 (68%), Gaps = 79/456 (17%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E + A + A K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 2 DEDQLLDYE-EEQEETTDGNKAENGSATDKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 60
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMDI+CQAKS
Sbjct: 61 G--------------FEHPSEVQHECIPQ------------------AILGMDIVCQAKS 88
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY+ +++ VFFGG
Sbjct: 89 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYIPGVRIAVFFGG 148
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L +K+F+LDECDKM+ +MRRDV
Sbjct: 149 IPIKKDEETLKNNTPHIVVGTPGRTLQLARQGSLKLKNIKYFVLDECDKMIGDNDMRRDV 208
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEI + +P KQVMMFSATL +++R VCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLKE
Sbjct: 209 QEIVKMTPQEKQVMMFSATLPRDLRVVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 268
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
EKNKKL ELLD LEFNQVVIFV+SV RC AL TLLSEQNFP+++IHRGM QEERL +YQ
Sbjct: 269 TEKNKKLLELLDQLEFNQVVIFVRSVQRCGALHTLLSEQNFPSIAIHRGMPQEERLSRYQ 328
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FKDF KGLAITF
Sbjct: 329 QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 388
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAKILN+VQDRFDV+++ELP EI+++TYIEGR
Sbjct: 389 SDENDAKILNDVQDRFDVNVTELPAEIEVATYIEGR 424
>gi|193652521|ref|XP_001942765.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Acyrthosiphon
pisum]
Length = 423
Score = 514 bits (1325), Expect = e-143, Method: Compositional matrix adjust.
Identities = 268/458 (58%), Positives = 320/458 (69%), Gaps = 81/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD DDLLDYE++E E + +D A +KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADADDLLDYEEDEQNETVESDDKKQA---KKEVKGNYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+LGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAMLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVL+TLQQLE +S VY LV+CHTRELAFQISKE+ERF+KY+ +KV VFF
Sbjct: 86 KSGMGKTAVFVLSTLQQLEVYESEVYALVLCHTRELAFQISKEFERFTKYLPAVKVSVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PI KDE+ LK + P +VVGTPGRIL L+R KKL L+ LKHFILDECDKMLE L MR
Sbjct: 146 GGVPITKDEDTLKNNKPHVVVGTPGRILELIRKKKLVLNNLKHFILDECDKMLEILHMRS 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIF+++P KQVMMFSATLSK+IRPVCKKFM P+EVYVDD+AKL+LHGLQQ+YVKL
Sbjct: 206 DVQEIFKNTPFNKQVMMFSATLSKDIRPVCKKFMQQPLEVYVDDDAKLSLHGLQQYYVKL 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
E EKNKKLF+LLD LEFNQV+IFVKSV RC+ L+ LL+EQNFP+V++H GM+Q++RLK
Sbjct: 266 TEKEKNKKLFDLLDELEFNQVIIFVKSVQRCVVLTELLNEQNFPSVAMHGGMSQQDRLKF 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQEFKDF KGLAIT
Sbjct: 326 YQEFKDFQKRILVATNLFGRGMDIERVNIVINYDMPEDTDTYLHRVARAGRFGTKGLAIT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F +E DAK+LN+VQDRFDV+I +P+EI+LS+Y+E +
Sbjct: 386 FICEETDAKVLNSVQDRFDVTIGRMPNEIELSSYVERK 423
>gi|339248287|ref|XP_003375777.1| DEAD-box helicase 1 [Trichinella spiralis]
gi|316970810|gb|EFV54682.1| DEAD-box helicase 1 [Trichinella spiralis]
Length = 714
Score = 511 bits (1315), Expect = e-142, Method: Compositional matrix adjust.
Identities = 265/455 (58%), Positives = 315/455 (69%), Gaps = 85/455 (18%)
Query: 40 NDDLLDYEDE-ENTEQ------IVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+++LLDYEDE E T Q I D + + +K VKGAY SIHSSGFRDFLLKPE+L
Sbjct: 6 HEELLDYEDEQEETVQHSKIADIQTDHHLEVVGGKKPVKGAYASIHSSGFRDFLLKPELL 65
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+IVDC ++ P + H +A+LGMD+
Sbjct: 66 RSIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDV 93
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
+CQAKSGMGKTAVFV+ATLQQL + V+ LVMCHTRELAFQISKEYERF KYM +KV
Sbjct: 94 VCQAKSGMGKTAVFVIATLQQLNAVEGEVHCLVMCHTRELAFQISKEYERFCKYMPKVKV 153
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
VFFGG ++KDE+ L+ + P IVVGTPGR+LAL RN+ L+L +K+FILDECD+ML L
Sbjct: 154 AVFFGGTNVKKDEDMLRNNTPHIVVGTPGRLLALARNRVLSLKSIKYFILDECDRMLGDL 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQEI++ +P KQVMMFSATLSKE+RPVCKKFM DPMEVYVDDEAKLTLHGLQQ+
Sbjct: 214 DMRRDVQEIYKMTPREKQVMMFSATLSKELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQY 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
YVKLKE EKNKKLFELLDVLEFNQVVIFV+SV RC+AL+ LL+EQNFP+++IHR M QEE
Sbjct: 274 YVKLKETEKNKKLFELLDVLEFNQVVIFVRSVQRCMALNELLTEQNFPSIAIHRSMAQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
RL +YQ+F+DFH KG
Sbjct: 334 RLSRYQQFRDFHKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441
LAITF SDE+DAK+LN+VQDRFDVSI ELPDE+DL
Sbjct: 394 LAITFVSDESDAKVLNDVQDRFDVSIGELPDELDL 428
>gi|346468339|gb|AEO34014.1| hypothetical protein [Amblyomma maculatum]
Length = 421
Score = 508 bits (1307), Expect = e-141, Method: Compositional matrix adjust.
Identities = 270/434 (62%), Positives = 313/434 (72%), Gaps = 78/434 (17%)
Query: 61 GDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIV 120
G+ + + K+ G YVSIHSSGFRDFLLKPE+LRAIVDC E + V
Sbjct: 20 GETIPEIKKPAGGYVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEV 65
Query: 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN 180
+ +P+ A+LGMDILCQAKSGMGKTAVFVLATLQQL+ +
Sbjct: 66 QHECIPQ------------------AILGMDILCQAKSGMGKTAVFVLATLQQLDPVEGQ 107
Query: 181 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP 240
V VLVMCHTRELAFQISKEYERFSKY+ +++VGVFFGG+ I DE+ L++ P +VVGTP
Sbjct: 108 VSVLVMCHTRELAFQISKEYERFSKYLPSVRVGVFFGGMNITNDEKVLRSSCPHVVVGTP 167
Query: 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300
GR+LALVR++KL L +KHF+LDECDKMLEQL+MRRDVQEIFRS+PH KQVMMFSATLSK
Sbjct: 168 GRVLALVRSRKLQLKHIKHFVLDECDKMLEQLDMRRDVQEIFRSTPHEKQVMMFSATLSK 227
Query: 301 EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360
EIRPVC KFM DPMEVYVDDEAKLTLHGLQQ+YVKLK+NEKN+KLFELLD+LEFNQVVIF
Sbjct: 228 EIRPVCLKFMQDPMEVYVDDEAKLTLHGLQQYYVKLKDNEKNRKLFELLDLLEFNQVVIF 287
Query: 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------- 404
VK+V RC+AL+ LL EQNFPA++IHR MTQEERL +YQ+FKDF
Sbjct: 288 VKTVQRCMALAQLLVEQNFPAIAIHRAMTQEERLSRYQQFKDFQKRILVATNLFGRGMDI 347
Query: 405 ------------------------------KGLAITFASDENDAKILNNVQDRFDVSISE 434
KGLA+TF SDE DAK LN VQDRFDV+ISE
Sbjct: 348 ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKTLNEVQDRFDVNISE 407
Query: 435 LPDEIDLSTYIEGR 448
LPDEID+S+YIEGR
Sbjct: 408 LPDEIDISSYIEGR 421
>gi|339521897|gb|AEJ84113.1| spliceosome RNA helicase Bat1 [Capra hircus]
Length = 428
Score = 507 bits (1305), Expect = e-141, Method: Compositional matrix adjust.
Identities = 275/459 (59%), Positives = 314/459 (68%), Gaps = 83/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E ADGA +A A K+V+ ++V IHSSGF DF KPE LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGADGA-EAPA-MKDVQASFVPIHSSGFPDFRPKPEWLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEPPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQ E V VLVMCHTRELAFQISKEYERF KYM ++KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQHWEPVTGQVSVLVMCHTRELAFQISKEYERFLKYMPSVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFG L I+KDEE LK + P IVVG+PGRILAL RNK LNL +KHFILDECDKML+QL+
Sbjct: 147 VFFGVLSIKKDEEVLKKNCPHIVVGSPGRILALARNKSLNLKHIKHFILDECDKMLQQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR PH KQ MMFSA LSKEIRPVC+K M DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMPPHEKQGMMFSAPLSKEIRPVCRKSMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKS RCIAL+ LL EQN PA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSGQRCIALAQLLVEQNSPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L + Q+FKDF KGL
Sbjct: 327 LSRSQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEYSDPYLHRVARAGRFGTKGL 386
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 387 AITFMSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
>gi|168985557|emb|CAQ10635.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 425
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/377 (68%), Positives = 293/377 (77%), Gaps = 37/377 (9%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFHKGLAIT 410
L +YQ+FKDF + + +
Sbjct: 327 LSRYQQFKDFQRRILVA 343
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/36 (97%), Positives = 35/36 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHR
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 374
>gi|351711520|gb|EHB14439.1| ATP-dependent RNA helicase DDX39 [Heterocephalus glaber]
Length = 419
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 261/426 (61%), Positives = 303/426 (71%), Gaps = 86/426 (20%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRD AIVDC F +++ I
Sbjct: 31 KKDVKGSYVSIHSSGFRD--------XAIVDCG--------FEHPSEVQHECI------- 67
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 68 -----------------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVM 110
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDE+ LK + P +VVGTPGRILAL
Sbjct: 111 CHTRELAFQISKEYERFSKYMPNVKVSVFFGGLSIKKDEDVLKRNCPHVVVGTPGRILAL 170
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC
Sbjct: 171 VRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVC 230
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV R
Sbjct: 231 RKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQR 290
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
C+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 291 CMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIV 350
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID
Sbjct: 351 FNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEID 410
Query: 441 LSTYIE 446
+STYIE
Sbjct: 411 ISTYIE 416
>gi|402593902|gb|EJW87829.1| spliceosome RNA helicase BAT1 [Wuchereria bancrofti]
Length = 424
Score = 506 bits (1302), Expect = e-140, Method: Compositional matrix adjust.
Identities = 266/452 (58%), Positives = 307/452 (67%), Gaps = 79/452 (17%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E + A + A K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 2 DEDQLLDYE-EEQEETTDGNKAENGSATDKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 60
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMDI+CQAKS
Sbjct: 61 G--------------FEHPSEVQHECIPQ------------------AILGMDIVCQAKS 88
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY+ +++ VFFGG
Sbjct: 89 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYIPGVRIAVFFGG 148
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L +K+F+LDECDKM+ +MRRDV
Sbjct: 149 IPIKKDEETLKNNTPHIVVGTPGRTLQLARQGSLKLKNIKYFVLDECDKMIGDNDMRRDV 208
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEI + +P KQVMMFSATL +++R VCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLKE
Sbjct: 209 QEIVKMTPQEKQVMMFSATLPRDLRVVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 268
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
EKNKKL ELLD LEFNQVVIFV+SV RC AL TLLSEQNFP+++IHRGM QEERL +YQ
Sbjct: 269 TEKNKKLLELLDQLEFNQVVIFVRSVQRCGALHTLLSEQNFPSIAIHRGMPQEERLSRYQ 328
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FKDF KGLAITF
Sbjct: 329 QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 388
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
SDENDAKILN+VQDRFDV+++ELP EI+++TY
Sbjct: 389 SDENDAKILNDVQDRFDVNVTELPAEIEVATY 420
>gi|170575130|ref|XP_001893112.1| Probable ATP-dependent RNA helicase p47 homolog [Brugia malayi]
gi|158601044|gb|EDP38054.1| Probable ATP-dependent RNA helicase p47 homolog, putative [Brugia
malayi]
Length = 710
Score = 504 bits (1298), Expect = e-140, Method: Compositional matrix adjust.
Identities = 264/453 (58%), Positives = 306/453 (67%), Gaps = 79/453 (17%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E + + A K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 2 DEDQLLDYE-EEQEETTDGNKTENGSATDKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 60
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
++ P + H +A+LGMDI+CQAKS
Sbjct: 61 -----------------------GFEHPSEVQ---HECI------PQAILGMDIVCQAKS 88
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY+ +++ VFFGG
Sbjct: 89 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYIPGVRIAVFFGG 148
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L +K+F+LDECDKM+ +MRRDV
Sbjct: 149 IPIKKDEETLKNNTPHIVVGTPGRTLQLARQGSLKLKNIKYFVLDECDKMIGDNDMRRDV 208
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEI + +P KQVMMFSATL +++R VCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLKE
Sbjct: 209 QEIVKMTPQEKQVMMFSATLPRDLRVVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 268
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
EKNKKL ELLD LEFNQVVIFV+SV RC AL TLLSEQNFP+++IHRGM QEERL +YQ
Sbjct: 269 TEKNKKLLELLDQLEFNQVVIFVRSVQRCGALHTLLSEQNFPSIAIHRGMPQEERLSRYQ 328
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FKDF KGLAITF
Sbjct: 329 QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 388
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
SDENDAKILN+VQDRFDV+++ELP EI+++TY+
Sbjct: 389 SDENDAKILNDVQDRFDVNVTELPAEIEVATYM 421
>gi|205942|gb|AAA41787.1| liver nuclear protein p47 [Rattus norvegicus]
Length = 399
Score = 504 bits (1297), Expect = e-140, Method: Compositional matrix adjust.
Identities = 259/377 (68%), Positives = 293/377 (77%), Gaps = 37/377 (9%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQN PA++IHRGM QEER
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNLPAIAIHRGMPQEER 326
Query: 394 LKKYQEFKDFHKGLAIT 410
L +YQ+FKDF + + +
Sbjct: 327 LSRYQQFKDFQRRILVA 343
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/59 (79%), Positives = 50/59 (84%), Gaps = 2/59 (3%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
RILVATNLFGRGMDI RVNI FNYDMPEDSDTYLHRVARAGRFGTK + LCQ ++
Sbjct: 339 RILVATNLFGRGMDIVRVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLASH--LCQTRT 395
>gi|358332904|dbj|GAA43229.2| ATP-dependent RNA helicase UAP56/SUB2 [Clonorchis sinensis]
Length = 426
Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust.
Identities = 262/459 (57%), Positives = 320/459 (69%), Gaps = 80/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADESELLDYEDEEQETVQETRPNGEAPAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+L MD+LCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ + +N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEEEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGLPI+KD E L IVVGTPGRIL L+RN+ L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGLPIRKDIETLSKSPVHIVVGTPGRILDLIRNQALKLQHVKHFIIDECDKMLDMLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RD+QEIFR +PH KQVMMFSAT+SKEIRPVC+ FM DP+E+++++++KLTLHGL+QHYVK
Sbjct: 208 RDIQEIFRMTPHQKQVMMFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVK 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLFELLD L+FNQV+IFVKSV RCIAL+ LL +QNFPA+++HR MTQEERL+
Sbjct: 268 VKENEKNRKLFELLDELQFNQVIIFVKSVQRCIALAQLLVDQNFPAIAMHRQMTQEERLE 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 328 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDE DAK+LN+VQ+RF+V+ISELPD +++S+Y+E R
Sbjct: 388 TFISDEVDAKVLNDVQNRFEVNISELPDVMEISSYMEDR 426
>gi|189502902|gb|ACE06832.1| unknown [Schistosoma japonicum]
gi|226469666|emb|CAX76663.1| Helicase at 25E [Schistosoma japonicum]
gi|226469670|emb|CAX76665.1| Helicase at 25E [Schistosoma japonicum]
gi|226469672|emb|CAX76666.1| Helicase at 25E [Schistosoma japonicum]
gi|226469674|emb|CAX76667.1| Helicase at 25E [Schistosoma japonicum]
gi|226469676|emb|CAX76668.1| Helicase at 25E [Schistosoma japonicum]
gi|226469678|emb|CAX76669.1| Helicase at 25E [Schistosoma japonicum]
gi|226473012|emb|CAX71192.1| Helicase at 25E [Schistosoma japonicum]
gi|226473014|emb|CAX71193.1| Helicase at 25E [Schistosoma japonicum]
gi|226473016|emb|CAX71194.1| Helicase at 25E [Schistosoma japonicum]
gi|226473018|emb|CAX71195.1| Helicase at 25E [Schistosoma japonicum]
gi|226473020|emb|CAX71196.1| Helicase at 25E [Schistosoma japonicum]
Length = 426
Score = 501 bits (1291), Expect = e-139, Method: Compositional matrix adjust.
Identities = 261/459 (56%), Positives = 319/459 (69%), Gaps = 80/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A+AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQETRPNGEAVAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+L MD+LCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH KQVMMFSAT+SKEIRPVC+ FM DP+E+++++++KLTLHGL+QHYVK
Sbjct: 208 RDVQEIFRMTPHQKQVMMFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVK 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLFELLD L+FNQV+IFVKSV RC+AL+ LL +QNFPA+++HR M QEERL+
Sbjct: 268 VKENEKNRKLFELLDELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLE 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 328 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDE DAK+LN VQ+RF+V+ISELPD +++S+Y+E R
Sbjct: 388 TFISDEQDAKVLNEVQNRFEVNISELPDVMEISSYMEDR 426
>gi|256070997|ref|XP_002571828.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|353228609|emb|CCD74780.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 426
Score = 501 bits (1289), Expect = e-139, Method: Compositional matrix adjust.
Identities = 262/459 (57%), Positives = 319/459 (69%), Gaps = 80/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE A G+A AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQEARPNGEATAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+L MD+LCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTTVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH KQVMMFSAT+SKEIRPVC+ FM DP+E+++++++KLTLHGL+QHYVK
Sbjct: 208 RDVQEIFRMTPHQKQVMMFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVK 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLFELLD L+FNQV+IFVKSV RC+AL+ LL +QNFPA+++HR M QEERL+
Sbjct: 268 VKENEKNRKLFELLDELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLE 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 328 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDE DAK+LN VQ+RF+V+ISELPD +++S+Y+E R
Sbjct: 388 TFISDEVDAKVLNEVQNRFEVNISELPDVMEISSYMEDR 426
>gi|67970471|dbj|BAE01578.1| unnamed protein product [Macaca fascicularis]
Length = 424
Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust.
Identities = 248/348 (71%), Positives = 274/348 (78%), Gaps = 46/348 (13%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 74 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 133
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 134 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 193
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 194 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 253
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 254 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 313
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
HRGM QEERL +YQ+FKDF
Sbjct: 314 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 373
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 374 AGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 421
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 335 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 382
>gi|268530282|ref|XP_002630267.1| C. briggsae CBR-HEL-1 protein [Caenorhabditis briggsae]
Length = 424
Score = 496 bits (1276), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/457 (57%), Positives = 308/457 (67%), Gaps = 83/457 (18%)
Query: 39 DNDDLLDYEDEENTEQIVAD-GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD 97
+++ LLDYE+E+ Q + G GD+ K+ KG Y SIHSSGFRDFLLKPEILRAI D
Sbjct: 2 EDEQLLDYEEEQEEIQDKQEVGGGDS----KKTKGTYASIHSSGFRDFLLKPEILRAIGD 57
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C E + V + +P+ A+LGMD++CQAK
Sbjct: 58 CG--------------FEHPSEVQHECIPQ------------------AILGMDVVCQAK 85
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFSKY+ +KV VFFG
Sbjct: 86 SGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFG 145
Query: 218 GLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRD 277
G+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+FILDECDKM+ +MRRD
Sbjct: 146 GMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFILDECDKMIGDADMRRD 205
Query: 278 VQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337
VQEI + +P KQVMMFSATL KE+R VCK+FM DPMEVYVDDEAKLTLHGLQQHYVKLK
Sbjct: 206 VQEIVKMTPQQKQVMMFSATLPKELRAVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLK 265
Query: 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397
E EKN+KL LLD+LEFNQVVIFVK+V RC AL LL+EQNFP+++IHR M QEERL +Y
Sbjct: 266 EAEKNRKLLNLLDILEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRY 325
Query: 398 QEFKDFH----------------------------------------------KGLAITF 411
Q FKDF KGLAITF
Sbjct: 326 QAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITF 385
Query: 412 ASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAK+LN+VQDRFD+SI+ELP+++D +TYIEGR
Sbjct: 386 VSDENDAKVLNSVQDRFDISITELPEKVDGATYIEGR 422
>gi|341896383|gb|EGT52318.1| CBN-HEL-1 protein [Caenorhabditis brenneri]
Length = 424
Score = 495 bits (1275), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/457 (57%), Positives = 307/457 (67%), Gaps = 83/457 (18%)
Query: 39 DNDDLLDYEDE-ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD 97
+++ LLDYE+E E+ + G GD+ K+ KG Y SIHSSGFRDFLLKPEILRAI D
Sbjct: 2 EDEQLLDYEEEQEDIQDKQEVGGGDS----KKTKGTYASIHSSGFRDFLLKPEILRAIGD 57
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C E + V + +P+ A+LGMD++CQAK
Sbjct: 58 CG--------------FEHPSEVQHECIPQ------------------AILGMDVVCQAK 85
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFSKY+ +KV VFFG
Sbjct: 86 SGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFG 145
Query: 218 GLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRD 277
G+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+F+LDECDKM+ +MRRD
Sbjct: 146 GMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRD 205
Query: 278 VQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337
VQEI + +P KQVMMFSATL KE+R VCK+FM DPMEVYVDDEAKLTLHGLQQHYVKLK
Sbjct: 206 VQEIVKMTPQQKQVMMFSATLPKELRAVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLK 265
Query: 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397
E EKN++L LLD LEFNQVVIFVK+V RC AL LL+EQNFP+++IHR M QEERL +Y
Sbjct: 266 EAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRY 325
Query: 398 QEFKDFH----------------------------------------------KGLAITF 411
Q FKDF KGLAITF
Sbjct: 326 QAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITF 385
Query: 412 ASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAK LN+VQDRFD+SI+ELP++ID+STYIEGR
Sbjct: 386 VSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 422
>gi|71982858|ref|NP_001021985.1| Protein HEL-1, isoform a [Caenorhabditis elegans]
gi|2500533|sp|Q18212.1|DX39B_CAEEL RecName: Full=Spliceosome RNA helicase DDX39B homolog; AltName:
Full=DEAD box protein UAP56
gi|3874509|emb|CAA91120.1| Protein HEL-1, isoform a [Caenorhabditis elegans]
Length = 425
Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust.
Identities = 261/458 (56%), Positives = 305/458 (66%), Gaps = 84/458 (18%)
Query: 39 DNDDLLDYEDEENTEQIVAD--GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
+ + LLDYE+E+ Q G GDA ++ KG Y SIHSSGFRDFLLKPEILRAI
Sbjct: 2 EEEQLLDYEEEQEEIQDKQPEVGGGDA----RKTKGTYASIHSSGFRDFLLKPEILRAIG 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMD++CQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AILGMDVVCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFSKY+ +KV VFF
Sbjct: 86 KSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+F+LDECDKM+ +MRR
Sbjct: 146 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEI + +P KQVMMFSATL KE+R VCK+FM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 206 DVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KE EKN++L LLD LEFNQVVIFVK+V RC AL LL+EQNFP+++IHR M QEERL +
Sbjct: 266 KEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSR 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ FKDF KGLAIT
Sbjct: 326 YQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAIT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDENDAK LN+VQDRFD+SI+ELP++ID+STYIEGR
Sbjct: 386 FVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423
>gi|156545225|ref|XP_001606735.1| PREDICTED: ATP-dependent RNA helicase WM6-like [Nasonia
vitripennis]
Length = 428
Score = 492 bits (1266), Expect = e-136, Method: Compositional matrix adjust.
Identities = 287/460 (62%), Positives = 323/460 (70%), Gaps = 80/460 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDA--LAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MAD D+LL+YED E+ EQ V A D+ +KEVKG YVSIHSS FRDFLLKPE+LRA
Sbjct: 1 MADIDNLLEYEDYEDEEQTVKLAASDSEVAPAKKEVKGTYVSIHSSSFRDFLLKPELLRA 60
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC E + V + +P+ AVLGMDILC
Sbjct: 61 ISDCG--------------FEHPSEVQHECIPQ------------------AVLGMDILC 88
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTA+FVLATLQQLE ++ V LVMCHTRELAFQISKEYERFSKY+ +KV V
Sbjct: 89 QAKSGMGKTAIFVLATLQQLELAENKVLGLVMCHTRELAFQISKEYERFSKYLPKVKVSV 148
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGG+PIQKD+E LK + P IVVGTPGRI ALV+ KKL+L LK FILDECDKMLEQL+M
Sbjct: 149 FFGGMPIQKDKEVLKNNCPHIVVGTPGRISALVKGKKLSLQHLKFFILDECDKMLEQLDM 208
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
R+DVQ IFRS+PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHY+
Sbjct: 209 RQDVQYIFRSTPHGKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYL 268
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KLKE EKNKKLFELLD LEFNQVVIFVKSV RC +L+ LL+E+NFP + IH+GMTQEERL
Sbjct: 269 KLKEKEKNKKLFELLDELEFNQVVIFVKSVQRCNSLTQLLTEENFPTIGIHKGMTQEERL 328
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
KYQ FKDF KGLA
Sbjct: 329 TKYQSFKDFQQRILVATNLFGRGLDIERVNIVFNYDMPENSDTYLHRVARAGRFGTKGLA 388
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
ITF DE D KILN+VQ+RFDV+I+ LPDEIDL++YIEGR
Sbjct: 389 ITFDCDEADDKILNDVQERFDVNIAALPDEIDLASYIEGR 428
>gi|440912451|gb|ELR62017.1| ATP-dependent RNA helicase DDX39, partial [Bos grunniens mutus]
Length = 447
Score = 491 bits (1265), Expect = e-136, Method: Compositional matrix adjust.
Identities = 264/451 (58%), Positives = 306/451 (67%), Gaps = 112/451 (24%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHP 67
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLE----------- 175
+ H +A+LGMDILCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 68 SEVQ---HECI------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQGTSTRV 118
Query: 176 ------TTD----------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
T+D V VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL
Sbjct: 119 GSGQGRTSDIALRVCAPPAPQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGL 178
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+KDEE LK + P +VVGTPGRILALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQ
Sbjct: 179 SIKKDEEVLKRNCPHVVVGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQ 238
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++
Sbjct: 239 EIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDS 298
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IH RL +YQ+
Sbjct: 299 EKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIH-------RLSRYQQ 351
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FKDF KGLA+TF S
Sbjct: 352 FKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVS 411
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTY 444
DENDAKILN+VQDRF+V+++ELP+EID+STY
Sbjct: 412 DENDAKILNDVQDRFEVNVAELPEEIDISTY 442
>gi|156390799|ref|XP_001635457.1| predicted protein [Nematostella vectensis]
gi|156222551|gb|EDO43394.1| predicted protein [Nematostella vectensis]
Length = 429
Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust.
Identities = 278/452 (61%), Positives = 314/452 (69%), Gaps = 80/452 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE+EEN A AK K+VKG YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 9 NELLDYEEEENEAPAEGAQAIKDQAK-KDVKGTYVSIHSSGFRDFLLKPELLRAIVDCG- 66
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
E + V + +P+ A+LGMDI+CQAKSGM
Sbjct: 67 -------------FEHPSEVQHECIPQ------------------AILGMDIICQAKSGM 95
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQLE D V VLVMCHTRELAFQI KEYERF KYMSNIK+ VFFGG+
Sbjct: 96 GKTAVFVLATLQQLEPVDGQVSVLVMCHTRELAFQIHKEYERFCKYMSNIKIAVFFGGIN 155
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+KD++ LKT+ P IVVGTPGRILAL R K LNL KHFILDECDKMLEQL+MRRDVQE
Sbjct: 156 IKKDQQTLKTNCPHIVVGTPGRILALTREKTLNLKHAKHFILDECDKMLEQLDMRRDVQE 215
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
+FR +PH KQVMMFSATL KEIR VCKKFM DPMEVYVDDE KLTLHGLQQ+YVKLK+NE
Sbjct: 216 VFRMTPHEKQVMMFSATLPKEIRSVCKKFMQDPMEVYVDDETKLTLHGLQQYYVKLKDNE 275
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KLF+LLD+LEFNQV+IFVKSV RC ALS LL +QNFPA+ IHRGM QEERL +YQ+F
Sbjct: 276 KNRKLFDLLDLLEFNQVIIFVKSVQRCTALSHLLLKQNFPAICIHRGMKQEERLARYQQF 335
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+F KGLAITF SD
Sbjct: 336 KNFEKRMLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSD 395
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
E DAK LN VQDRF+V++ ELPDEID+S Y+E
Sbjct: 396 EADAKTLNEVQDRFEVNVGELPDEIDMS-YVE 426
>gi|308510234|ref|XP_003117300.1| CRE-HEL-1 protein [Caenorhabditis remanei]
gi|308242214|gb|EFO86166.1| CRE-HEL-1 protein [Caenorhabditis remanei]
Length = 424
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 256/436 (58%), Positives = 294/436 (67%), Gaps = 82/436 (18%)
Query: 59 GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVN 118
G GDA K+ KG Y SIHSSGFRDFLLKPEILRAI DC E +
Sbjct: 23 GGGDA----KKTKGTYASIHSSGFRDFLLKPEILRAIGDCG--------------FEHPS 64
Query: 119 IVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD 178
V + +P+ A+LGMD++CQAKSGMGKTAVFV+ TLQQLE D
Sbjct: 65 EVQHECIPQ------------------AILGMDVVCQAKSGMGKTAVFVITTLQQLEPVD 106
Query: 179 SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238
V V+ MCHTRELAFQISKEYERFSKY+ +KV VFFGG+ I+KDEE L P IVVG
Sbjct: 107 GEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVG 166
Query: 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
TPGR+LAL R+ KL L +K+F+LDECDKM+ +MRRDVQEI + +P KQVMMFSATL
Sbjct: 167 TPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATL 226
Query: 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVV 358
KE+R VCK+FM DPMEVYVDDEAKLTLHGLQQHYVKLKE EKN+KL LLD LEFNQVV
Sbjct: 227 PKELRAVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKLKEAEKNRKLLNLLDALEFNQVV 286
Query: 359 IFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------- 404
IFVK+V RC AL LL+EQNFP+++IHR M QEERL +YQ FKDF
Sbjct: 287 IFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSRYQSFKDFQKRILVATDLFGRGM 346
Query: 405 --------------------------------KGLAITFASDENDAKILNNVQDRFDVSI 432
KGLAITF SDENDAK LN+VQDRFD+SI
Sbjct: 347 DIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAITFVSDENDAKTLNSVQDRFDISI 406
Query: 433 SELPDEIDLSTYIEGR 448
+ELP++ID+STYIEGR
Sbjct: 407 TELPEKIDVSTYIEGR 422
>gi|395832555|ref|XP_003789329.1| PREDICTED: spliceosome RNA helicase Ddx39b [Otolemur garnettii]
Length = 423
Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust.
Identities = 245/348 (70%), Positives = 270/348 (77%), Gaps = 46/348 (13%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 73 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 132
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 133 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 192
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL DVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 193 CDKMLEQLXXXXDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 252
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 253 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 312
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
HRGM QEERL +YQ+FKDF
Sbjct: 313 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 372
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 373 AGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 420
Score = 101 bits (251), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 334 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 381
>gi|324510197|gb|ADY44267.1| Spliceosome RNA helicase BAT1 [Ascaris suum]
Length = 429
Score = 489 bits (1259), Expect = e-135, Method: Compositional matrix adjust.
Identities = 274/456 (60%), Positives = 311/456 (68%), Gaps = 79/456 (17%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E A A + +K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 5 DEDQLLDYE-EEQEEATDATKAENGTTAEKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 63
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMDI+CQAKS
Sbjct: 64 G--------------FEHPSEVQHECIPQ------------------AILGMDIVCQAKS 91
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY IK+GVFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYYPGIKIGVFFGG 151
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L+ +K+F+LDECDKM+ +MRRDV
Sbjct: 152 MPIKKDEEVLKNNTPHIVVGTPGRTLQLARQGSLKLNKIKYFVLDECDKMIGDNDMRRDV 211
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEI + +P KQVMMFSATL K++R VCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLKE
Sbjct: 212 QEIVKMTPQEKQVMMFSATLPKDLRAVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 271
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
NEKNKKL ELLD LEFNQVVIFV+SV RC AL LLSEQNFP+++IHRGM QEERL +YQ
Sbjct: 272 NEKNKKLLELLDQLEFNQVVIFVRSVQRCGALHRLLSEQNFPSIAIHRGMPQEERLSRYQ 331
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FKDF KGLAITF
Sbjct: 332 QFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 391
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
SDENDAKILN+VQDRFDV+++ELP EI++ TYIEGR
Sbjct: 392 SDENDAKILNDVQDRFDVNVTELPAEIEVGTYIEGR 427
>gi|432094533|gb|ELK26087.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 435
Score = 489 bits (1258), Expect = e-135, Method: Compositional matrix adjust.
Identities = 256/434 (58%), Positives = 297/434 (68%), Gaps = 94/434 (21%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
A + +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 21 APTESTPVPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC------------------ 62
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
++ P + H +A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 63 -----GFEHPSEVQ---HECI------PQAILGMDVLCQAKSGMGKTAVFVLATLQQIEP 108
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
+ V VLVMCHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 109 VNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 168
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILALVRN+ LNL +KHF+LDECDKMLEQL+MRRDVQEIFR +P KQ MMFSA
Sbjct: 169 VGTPGRILALVRNRSLNLRNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPRGKQCMMFSA 228
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
TLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQ
Sbjct: 229 TLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ 288
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 289 ----------------LLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 332
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF SDENDAKILN+VQDRF+V
Sbjct: 333 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 392
Query: 431 SISELPDEIDLSTY 444
+++ELP+EID+STY
Sbjct: 393 NVAELPEEIDISTY 406
>gi|317575817|ref|NP_001187807.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
gi|308324021|gb|ADO29146.1| spliceosome RNA helicase bat1 [Ictalurus punctatus]
Length = 426
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 249/459 (54%), Positives = 318/459 (69%), Gaps = 80/459 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD ++LLDY DE+ E + + L +K VKG YV++HSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADENELLDY-DEDEQETVQEPKSNGELQVKKAVKGDYVTVHSSGFRDFILKPEVLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+L MD+LCQA
Sbjct: 60 DCG--------FEHPSEVQHECI------------------------PQAILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVY-VLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ + + VLV+CHTRELA+QISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEEEGMTRVLVLCHTRELAYQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+P+++D E P IVVGTPGRIL L+RNK L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPLRRDIESFGKGAPHIVVGTPGRILDLIRNKALKLDNIKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQ+IFR +P +KQVMMFSAT+SK+IRPVC+ FM DP+E+++D+++KLTLHGL+QHYVK
Sbjct: 208 RDVQDIFRQTPRSKQVMMFSATMSKDIRPVCRNFMQDPLEIFIDNDSKLTLHGLRQHYVK 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLFELLD L+FNQV+IFVKSV RCIAL LL +QNFPA+++HR M+QEERL+
Sbjct: 268 VKENEKNRKLFELLDELQFNQVIIFVKSVQRCIALCQLLVDQNFPAIAMHRSMSQEERLE 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 328 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
TF SDE+DA+ILN+VQ+RF+V+ISELPD +++++Y+E R
Sbjct: 388 TFISDEHDAEILNDVQNRFEVNISELPDVMEIASYMEDR 426
>gi|442753421|gb|JAA68870.1| Putative atp-dependent rna helicase [Ixodes ricinus]
Length = 418
Score = 487 bits (1253), Expect = e-135, Method: Compositional matrix adjust.
Identities = 268/451 (59%), Positives = 311/451 (68%), Gaps = 83/451 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADND L + E+ AG+ + + K+ G YVSIHSSGFRDFLLKPE+LRAIV
Sbjct: 1 MADNDLL-----DYEDEEEQEQTAGEPIPEVKKPTGGYVSIHSSGFRDFLLKPELLRAIV 55
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+LGMDILCQA
Sbjct: 56 DCG--------FEHPSEVQHECI------------------------PQAILGMDILCQA 83
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQL+ D V VLVMCHTRELAFQISKEYERFSKY+ +++VGVFF
Sbjct: 84 KSGMGKTAVFVLATLQQLDPVDGQVSVLVMCHTRELAFQISKEYERFSKYLPSVRVGVFF 143
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I DE+ LK+ P +VV PGR LALVR++KL L +KHF+LDECDKMLEQL+MRR
Sbjct: 144 GGMNISNDEKLLKSSCPHVVVAPPGRALALVRSRKLQLKHIKHFVLDECDKMLEQLDMRR 203
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR++PH KQVMMFSATLSK+IRPVC KFM DPMEVYVDDEAKLTLHGLQQ+YVKL
Sbjct: 204 DVQEIFRNTPHEKQVMMFSATLSKDIRPVCLKFMQDPMEVYVDDEAKLTLHGLQQYYVKL 263
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
K+NEKN+KLFELLD+LEFNQVVIFVK+V RC+AL+ LL EQNFPA++IHR MTQEERL +
Sbjct: 264 KDNEKNRKLFELLDLLEFNQVVIFVKTVQRCMALAQLLVEQNFPAIAIHRAMTQEERLSR 323
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ+FKDF KGLA+T
Sbjct: 324 YQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVT 383
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDL 441
SDE DAK LN VQDRFDV+ISELPDEID+
Sbjct: 384 XVSDETDAKTLNEVQDRFDVNISELPDEIDI 414
>gi|410917396|ref|XP_003972172.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like, partial
[Takifugu rubripes]
Length = 433
Score = 486 bits (1250), Expect = e-134, Method: Compositional matrix adjust.
Identities = 249/428 (58%), Positives = 296/428 (69%), Gaps = 78/428 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A +KEVKG+YVSIH+SGFRDFLLKPE+LRAIV+C ++
Sbjct: 29 ANKKEVKGSYVSIHNSGFRDFLLKPELLRAIVEC-----------------------GFE 65
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
P + H +A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VL
Sbjct: 66 HPSEVQ---HECI------PQAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVL 116
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
VMCHTRELAFQISKEYERFSKYM +KV VFFGGL I+KDEE LK + P I+VGTPGRI
Sbjct: 117 VMCHTRELAFQISKEYERFSKYMPTVKVSVFFGGLAIRKDEEVLKKNCPHIIVGTPGRIR 176
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+ K L L KHF+LDECDKMLEQ +MR+DVQ+IFR +PH KQVMMFSATLSKE+RP
Sbjct: 177 ALILQKSLRLKNSKHFVLDECDKMLEQRDMRKDVQDIFRMTPHEKQVMMFSATLSKEVRP 236
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VC++FM DPMEV+VDDE KL LHG++Q+Y K+KE EKN+K+F+LLDVLEFNQV+IFVK+V
Sbjct: 237 VCRRFMQDPMEVFVDDETKLILHGMRQYYCKVKEVEKNRKIFDLLDVLEFNQVLIFVKTV 296
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RCIALS LL EQ FP +IHRGM QEER+ ++Q+FK+F
Sbjct: 297 QRCIALSQLLVEQKFPTTAIHRGMAQEERIARFQQFKNFQQRILVTTNLFGRGMDIERVN 356
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDE DAK LN+VQDRFDV++ ELP+E
Sbjct: 357 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDEKDAKFLNDVQDRFDVNVVELPEE 416
Query: 439 IDLSTYIE 446
+ +S YI+
Sbjct: 417 VCVSPYIQ 424
>gi|380799051|gb|AFE71401.1| ATP-dependent RNA helicase DDX39A, partial [Macaca mulatta]
Length = 375
Score = 484 bits (1247), Expect = e-134, Method: Compositional matrix adjust.
Identities = 247/404 (61%), Positives = 289/404 (71%), Gaps = 78/404 (19%)
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAIVDC ++ P + H +A+L
Sbjct: 1 PELLRAIVDC-----------------------GFEHPSEVQ---HECI------PQAIL 28
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM
Sbjct: 29 GMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMP 88
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKM
Sbjct: 89 SVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKM 148
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHG
Sbjct: 149 LEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHG 208
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM
Sbjct: 209 LQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGM 268
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
QEERL +YQ+FKDF
Sbjct: 269 AQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 328
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 329 GTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 372
>gi|476338|gb|AAB65852.1| putative RNA helicase, partial [Caenorhabditis elegans]
Length = 417
Score = 483 bits (1242), Expect = e-133, Method: Compositional matrix adjust.
Identities = 260/458 (56%), Positives = 302/458 (65%), Gaps = 91/458 (19%)
Query: 39 DNDDLLDYEDEENTEQIVAD--GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
+ + LLDYE+E+ Q G GDA ++ KG Y SIHSSGFRDFLLKPEILRAI
Sbjct: 1 EEEQLLDYEEEQEEIQDKQPEVGGGDA----RKTKGTYASIHSSGFRDFLLKPEILRAIG 56
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMD++CQA
Sbjct: 57 DCG--------------FEHPSEVQHECIPQ------------------AILGMDVVCQA 84
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFSKY+ +KV VFF
Sbjct: 85 KSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFF 144
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+F+LDECDKM+ +MRR
Sbjct: 145 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRR 204
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEI KQVMMFSATL KE+R VCK+FM DPMEVYVDDEAKLTLHGLQQHYVKL
Sbjct: 205 DVQEI-------KQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKLTLHGLQQHYVKL 257
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
KE EKN++L LLD LEFNQVVIFVK+V RC AL LL+EQNFP+++IHR M QEERL +
Sbjct: 258 KEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAIHRQMAQEERLSR 317
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ FKDF KGLAIT
Sbjct: 318 YQAFKDFQKRILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGLAIT 377
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDENDAK LN+VQDRFD+SI+ELP++ID+STYIEGR
Sbjct: 378 FVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 415
>gi|443689578|gb|ELT91951.1| hypothetical protein CAPTEDRAFT_165082, partial [Capitella teleta]
Length = 433
Score = 482 bits (1240), Expect = e-133, Method: Compositional matrix adjust.
Identities = 234/344 (68%), Positives = 273/344 (79%), Gaps = 32/344 (9%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+KEVKG YVSIHSSGFRDFLLKPE+LRAIVDC ++ P
Sbjct: 32 KKEVKGTYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHP 68
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ H +A+LGMD++CQAKSGMGKTAVFVLATLQQ+E ++ V VLV+
Sbjct: 69 SEVQ---HECI------PQAILGMDVVCQAKSGMGKTAVFVLATLQQIEPVENQVSVLVL 119
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYMS IK+ VFFGG+ I+KDE LK + P I+VGTPGRILAL
Sbjct: 120 CHTRELAFQISKEYERFSKYMSGIKIAVFFGGMNIKKDETVLKNNCPNIIVGTPGRILAL 179
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
+RNK LNL +KHF+LDECDKMLE L+MRRDVQEIFR +PH KQVMMFSATLS+EIRPVC
Sbjct: 180 IRNKHLNLKNIKHFVLDECDKMLEALDMRRDVQEIFRMTPHEKQVMMFSATLSEEIRPVC 239
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
KKFM DPMEVYVDD++KLTLHGLQQHY+KLK+NEKN++LFELLD LEFNQV+IFVKSV R
Sbjct: 240 KKFMQDPMEVYVDDDSKLTLHGLQQHYIKLKDNEKNRRLFELLDALEFNQVIIFVKSVQR 299
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
C+AL+ LL EQNFPA++IHR +TQEERL KYQ+FKDF K + +
Sbjct: 300 CMALAQLLVEQNFPAIAIHRALTQEERLAKYQQFKDFQKRILVA 343
Score = 103 bits (258), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 48/59 (81%), Positives = 51/59 (86%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK + + C K+
Sbjct: 339 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSCVLKT 397
>gi|345313468|ref|XP_001515366.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Ornithorhynchus
anatinus]
Length = 440
Score = 480 bits (1235), Expect = e-133, Method: Compositional matrix adjust.
Identities = 249/455 (54%), Positives = 308/455 (67%), Gaps = 84/455 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MAD D DLLDYED+ + E + + +K VKG+YV+IHSSGFRDFLLKPE+LR
Sbjct: 1 MADQDIVDDLLDYEDDGDFENMETELPSPV---KKSVKGSYVAIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I+DC ++ P S+ + +A+LG+D+L
Sbjct: 58 CILDC-----------------------GFEHP--SEVQFECIP-------QAILGVDLL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVL+TLQQL+ D + L+MCHTRELAFQISKE++RFSKYM +KV
Sbjct: 86 CQAKSGMGKTAVFVLSTLQQLDPIDGQIAALIMCHTRELAFQISKEFQRFSKYMPKVKVA 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE L+ + P IVVGTPGRILALVRNKKL+L +KHF+LDECDKMLEQL
Sbjct: 146 VFFGGLSIKKDEEVLQKNCPHIVVGTPGRILALVRNKKLSLKYVKHFVLDECDKMLEQLT 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MR+DVQEI+ +PH+KQ MMFSAT++KEIRP+C+KFM DPME++VDDE KLTLHGLQQ Y
Sbjct: 206 MRQDVQEIYHLTPHSKQCMMFSATMNKEIRPLCRKFMQDPMEIFVDDEKKLTLHGLQQFY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
V LKENEKN+KLF+LLD LEFNQVVIFVKSV RCIAL+ LL EQNFPA+SIHRGM QEER
Sbjct: 266 VHLKENEKNRKLFDLLDALEFNQVVIFVKSVQRCIALAQLLLEQNFPAISIHRGMVQEER 325
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FK+F +G+
Sbjct: 326 LSRYQQFKEFESRILVTTNLFGRGMDIERVNIVFNYDMPEDSNTYLHRVARAGRFGTRGM 385
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442
AI+F +DE D +L ++ RFD+ + ELP E+ ++
Sbjct: 386 AISFVTDEVDTLVLRDILKRFDIILEELPREMKIT 420
>gi|290562595|gb|ADD38693.1| Spliceosome RNA helicase BAT1 [Lepeophtheirus salmonis]
Length = 428
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/458 (53%), Positives = 307/458 (67%), Gaps = 78/458 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDE I GD A +K +KGAYV+IHSSGFRDF+LKPE+L+AIV
Sbjct: 1 MADESELLDYEDEAEESLIKQKSNGDVSANKKSLKGAYVTIHSSGFRDFILKPEVLKAIV 60
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMD+LCQA
Sbjct: 61 DCG--------------FEHPSEVQHESIPQ------------------AILGMDVLCQA 88
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFV+ATLQQL+ +++ VLV+CHTRELAFQISKEYERFSK++ +KVGVFF
Sbjct: 89 KSGMGKTAVFVIATLQQLDPEETHTRVLVLCHTRELAFQISKEYERFSKFIPALKVGVFF 148
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+P++KD + L I VGTPGR+L L+R + L L +KHFI+DECDKML+ L+MR+
Sbjct: 149 GGVPLKKDMDLLSKQTIHIAVGTPGRLLDLIRKRALKLDNVKHFIIDECDKMLDTLDMRK 208
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIF+ +P KQVMMFSAT+SKEIRPVCK FM DP+E+++D+++KLTLHGL+QHYVK+
Sbjct: 209 DVQEIFKMTPKQKQVMMFSATMSKEIRPVCKNFMQDPLEIFIDNDSKLTLHGLRQHYVKV 268
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
K+N KN+KLF+LLD LEFNQV+IFVKSV RCIAL+ LL QNFPA+ IHR MTQ++RL
Sbjct: 269 KDNAKNRKLFDLLDELEFNQVIIFVKSVQRCIALTKLLLTQNFPAIEIHRQMTQQQRLDN 328
Query: 397 YQEFKDFHK----------------------------------------------GLAIT 410
YQ FK+FHK GLA+T
Sbjct: 329 YQAFKNFHKRVLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTNGLAMT 388
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F SDE+DA +LN+VQ+RF V+ISEL D L Y+ R
Sbjct: 389 FVSDESDATVLNDVQNRFVVNISELEDVSSLENYMNDR 426
>gi|146197860|dbj|BAF57641.1| WM6 protein [Dugesia japonica]
Length = 403
Score = 479 bits (1234), Expect = e-133, Method: Compositional matrix adjust.
Identities = 245/430 (56%), Positives = 299/430 (69%), Gaps = 79/430 (18%)
Query: 66 KQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDM 125
+QK +K VS+H SGFRDFLLKPE+LRAIVDC ++
Sbjct: 6 QQKGLKEVTVSMHRSGFRDFLLKPELLRAIVDC-----------------------GFEH 42
Query: 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVL 184
P + H +A+L MD+LCQAKSGMGKTAVFVL+TLQQL+ TD VL
Sbjct: 43 PSEVQ---HECI------PQAILSMDVLCQAKSGMGKTAVFVLSTLQQLDATDDGTCKVL 93
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
V+CHTRELAFQISKEYERFSKYMSNI V VF+GG+PI+ D E LK PQ++V TPGR+L
Sbjct: 94 VLCHTRELAFQISKEYERFSKYMSNINVSVFYGGVPIRNDIEKLKKSVPQLIVATPGRLL 153
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
LVR K LNL +KHFILDECDKML+ + MR DVQE+F+ +PH KQVMMFSATLSKEIRP
Sbjct: 154 DLVRQKALNLKSVKHFILDECDKMLDNVSMRGDVQEVFKLTPHQKQVMMFSATLSKEIRP 213
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
+CKKFM DP+E+++DD++KLTLHGL+QHY+K+KENEKN+KLFELLD L+FNQV++FVKSV
Sbjct: 214 ICKKFMQDPLEIFIDDDSKLTLHGLKQHYLKVKENEKNRKLFELLDELQFNQVIVFVKSV 273
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
RCIAL LL EQNFPA++IHR MTQE+R+ +YQ FK+F
Sbjct: 274 QRCIALCNLLCEQNFPAIAIHRQMTQEDRISRYQAFKNFQKRLLVATNLFGRGMDIERVN 333
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF SDENDAKILN+VQ+RF+V+ISELPD
Sbjct: 334 IVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFISDENDAKILNDVQNRFEVNISELPDV 393
Query: 439 IDLSTYIEGR 448
++++TY+E R
Sbjct: 394 VEITTYMEER 403
>gi|41054355|ref|NP_956015.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39Aa [Danio rerio]
gi|27503947|gb|AAH42330.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39a [Danio rerio]
gi|182888744|gb|AAI64154.1| Ddx39a protein [Danio rerio]
Length = 346
Score = 479 bits (1232), Expect = e-132, Method: Compositional matrix adjust.
Identities = 236/343 (68%), Positives = 268/343 (78%), Gaps = 46/343 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFSKYMS+
Sbjct: 1 MDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMSS 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+K VFFGG+ I+KDE+ LK + P IVVGTPGRILAL RNK L L +KHF+LDECDKML
Sbjct: 61 VKCAVFFGGMSIKKDEDVLKKNCPHIVVGTPGRILALSRNKTLTLKNVKHFVLDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
EQL+MRRDVQ+IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGL
Sbjct: 121 EQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+ALS LL EQNFPA++IHRGMT
Sbjct: 181 QQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAIHRGMT 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +YQ+FKDF
Sbjct: 241 QEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+TF SDE DAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 301 TKGLAVTFVSDETDAKILNDVQDRFEVNVAELPEEIDISTYIE 343
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 257 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 304
>gi|29841421|gb|AAP06453.1| similar to NM_019693 HLA-B associated transcript 1 in Homo sapiens
[Schistosoma japonicum]
Length = 410
Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust.
Identities = 251/439 (57%), Positives = 302/439 (68%), Gaps = 80/439 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A+AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQETRPNGEAVAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+L MD+LCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH KQVMMFSAT+SKEIRPVC+ FM DP+E+++++++KLTLHGL+QHYVK
Sbjct: 208 RDVQEIFRMTPHQKQVMMFSATMSKEIRPVCRNFMQDPLEIFIENDSKLTLHGLRQHYVK 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
+KENEKN+KLFELLD L+FNQV+IFVKSV RC+AL+ LL +QNFPA+++HR M QEERL+
Sbjct: 268 VKENEKNRKLFELLDELQFNQVIIFVKSVQRCMALAQLLVDQNFPAIAMHRNMAQEERLE 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLAI
Sbjct: 328 RYQAFKNFQKRLLVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAI 387
Query: 410 TFASDENDAKILNNVQDRF 428
TF SDE DAK+LN VQ+RF
Sbjct: 388 TFISDEQDAKVLNEVQNRF 406
>gi|395837044|ref|XP_003791455.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Otolemur
garnettii]
Length = 444
Score = 474 bits (1221), Expect = e-131, Method: Compositional matrix adjust.
Identities = 250/452 (55%), Positives = 304/452 (67%), Gaps = 81/452 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++L DYE++E ++ A +K+VKG+YV IHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 NELSDYEEDE---ELQAPPESTPAPPKKDVKGSYVCIHSSGFRDFLLKPELLRAIVDC-- 79
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
++ P + H +A+LG+D+LCQA+SGM
Sbjct: 80 ---------------------GFEHPSEVQ---HECI------PQAILGLDVLCQARSGM 109
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYE FSKYM ++KV VFFGGL
Sbjct: 110 GKTAVFVLATLQQIEPINGQVTVLVMCHTRELAFQISKEYEGFSKYMPSVKVSVFFGGLS 169
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+KDE+ LK + P +VVGTPGRILALVRN+ LNL +KHF+LDECDKMLE+ +MRR V E
Sbjct: 170 IRKDEKVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLERPDMRRHVWE 229
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +P KQ MMFSATLS+EIRPVC+KFM DPMEV+ DDE KLTL GLQQ YVKL+ +E
Sbjct: 230 IFRLTPREKQCMMFSATLSQEIRPVCRKFMQDPMEVFADDEIKLTLRGLQQFYVKLRGSE 289
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LL+VLEF+QVVIFV S+ RC+AL+ LL QNFPAV+IHRGM QEER +YQ+F
Sbjct: 290 KNRKLSDLLEVLEFDQVVIFVTSMQRCMALAQLLVGQNFPAVAIHRGMAQEERRSRYQQF 349
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K F KGLA TF SD
Sbjct: 350 KGFQQRILVATDLFGRGMDIEPVDIVFNYDMPEDSDTYLHRVARAGRFGTKGLAFTFVSD 409
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
ENDAKIL +VQDRF V+++E P+EI +STYI+
Sbjct: 410 ENDAKILKDVQDRFGVNVAEFPEEIAISTYIK 441
>gi|158299806|ref|XP_319825.4| AGAP009075-PA [Anopheles gambiae str. PEST]
gi|157013695|gb|EAA14744.5| AGAP009075-PA [Anopheles gambiae str. PEST]
Length = 319
Score = 472 bits (1214), Expect = e-130, Method: Compositional matrix adjust.
Identities = 259/354 (73%), Positives = 282/354 (79%), Gaps = 35/354 (9%)
Query: 49 EENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLF 108
E+ TEQ+VA+ +K+VKG YVSIHSSGFRDFLLKPEILRAIVDC F
Sbjct: 1 EDQTEQVVAETTEQP---KKDVKGTYVSIHSSGFRDFLLKPEILRAIVDCG--------F 49
Query: 109 GRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVL 168
+++ I +AVLGMDILCQAKSGMGKTAVFVL
Sbjct: 50 EHPSEVQHECI------------------------PQAVLGMDILCQAKSGMGKTAVFVL 85
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE T++ YVLVMCHTRELAFQISKEYERF KYM IKV VFFGGLPIQKDEE L
Sbjct: 86 ATLQQLEPTENVPYVLVMCHTRELAFQISKEYERFCKYMPTIKVAVFFGGLPIQKDEEVL 145
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
KT P I+VGTPGR+LAL+RNKKLNL LKHFILDECDKMLEQL+MRRDVQEIFR++PH
Sbjct: 146 KTTTPHIIVGTPGRVLALIRNKKLNLKNLKHFILDECDKMLEQLDMRRDVQEIFRNTPHG 205
Query: 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL 348
KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKLKENEKNKKLFEL
Sbjct: 206 KQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFEL 265
Query: 349 LDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402
LDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGM QEERL +YQ+FKD
Sbjct: 266 LDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMVQEERLSRYQQFKD 319
>gi|339259990|ref|XP_003368629.1| spliceosome RNA helicase BAT1 [Trichinella spiralis]
gi|316964502|gb|EFV49578.1| spliceosome RNA helicase BAT1 [Trichinella spiralis]
Length = 640
Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust.
Identities = 236/378 (62%), Positives = 284/378 (75%), Gaps = 39/378 (10%)
Query: 40 NDDLLDYEDE-ENTEQ------IVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+++LLDYEDE E T Q I D + + +K VKGAY SIHSSGFRDFLLKPE+L
Sbjct: 6 HEELLDYEDEQEETVQHSKIADIQTDHHLEVVGGKKPVKGAYASIHSSGFRDFLLKPELL 65
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+IVDC E + V + +P+ A+LGMD+
Sbjct: 66 RSIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDV 93
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
+CQAKSGMGKTAVFV+ATLQQL + V+ LVMCHTRELAFQISKEYERF KYM +KV
Sbjct: 94 VCQAKSGMGKTAVFVIATLQQLNAVEGEVHCLVMCHTRELAFQISKEYERFCKYMPKVKV 153
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
VFFGG ++KDE+ L+ + P IVVGTPGR+LAL RN+ L+L +K+FILDECD+ML L
Sbjct: 154 AVFFGGTNVKKDEDMLRNNTPHIVVGTPGRLLALARNRVLSLKSIKYFILDECDRMLGDL 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQEI++ +P KQVMMFSATLSKE+RPVCKKFM DPMEVYVDDEAKLTLHGLQQ+
Sbjct: 214 DMRRDVQEIYKMTPREKQVMMFSATLSKELRPVCKKFMQDPMEVYVDDEAKLTLHGLQQY 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
YVKLKE EKNKKLFELLDVLEFNQVVIFV+SV RC+AL+ LL+EQNFP+++IHR M QEE
Sbjct: 274 YVKLKETEKNKKLFELLDVLEFNQVVIFVRSVQRCMALNELLTEQNFPSIAIHRSMAQEE 333
Query: 393 RLKKYQEFKDFHKGLAIT 410
RL +YQ+F+DFHK + +
Sbjct: 334 RLSRYQQFRDFHKRILVA 351
Score = 94.4 bits (233), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 47/59 (79%), Gaps = 11/59 (18%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR-----------VARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR VARAGRFGTK +
Sbjct: 347 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVNMNAFTLKIDVARAGRFGTKGL 405
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/37 (83%), Positives = 35/37 (94%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441
KGLAITF SDE+DAK+LN+VQDRFDVSI ELPDE+DL
Sbjct: 403 KGLAITFVSDESDAKVLNDVQDRFDVSIGELPDELDL 439
>gi|441628856|ref|XP_003275725.2| PREDICTED: ATP-dependent RNA helicase DDX39A [Nomascus leucogenys]
Length = 424
Score = 469 bits (1208), Expect = e-130, Method: Compositional matrix adjust.
Identities = 256/459 (55%), Positives = 304/459 (66%), Gaps = 87/459 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 58 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
P + RILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 PSGWTGP---GAAWFLQLCXXXXXXXXXRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 202
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 203 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 262
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 263 VKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 322
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 323 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 382
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
AITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 AITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 421
>gi|384493944|gb|EIE84435.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 435
Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust.
Identities = 241/458 (52%), Positives = 311/458 (67%), Gaps = 85/458 (18%)
Query: 41 DDLLDYE--DEENTEQIVADGAGDALAKQ---KEVKGAYVSIHSSGFRDFLLKPEILRAI 95
DDL+DYE DE+ +Q + + ++ K+ KG+YV IHS+GFRDFLLKPE+LR+I
Sbjct: 8 DDLIDYEEEDEQTLDQKPVSTKVEEIREEEDKKDKKGSYVGIHSTGFRDFLLKPELLRSI 67
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
VDC F ++++ I +A+LGMD+LCQ
Sbjct: 68 VDCG--------FEHPSEVQQECI------------------------PQAILGMDVLCQ 95
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSGMGKTAVFVLATLQQ+E D +V V+V+CHTRELAFQI EY RFSKY+ +I+ VF
Sbjct: 96 AKSGMGKTAVFVLATLQQIEPIDGDVSVVVLCHTRELAFQIKNEYARFSKYLPDIRTEVF 155
Query: 216 FGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
+GG+PI KD E LK N P I+VGTPGR+LALVR + ++LS +KHF+LDECDKMLEQL+
Sbjct: 156 YGGVPITKDIEILKDKNKCPHILVGTPGRVLALVRERHISLSTIKHFVLDECDKMLEQLD 215
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQ+IFRS+PH KQVMMFSATL+KE+RPVCK+FM +P+E+YVDDEAKLTLHGLQQ Y
Sbjct: 216 MRRDVQDIFRSTPHHKQVMMFSATLAKEMRPVCKRFMQNPLEIYVDDEAKLTLHGLQQFY 275
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
+KL+E EKN+KL +LLD LEFNQV IFV+SV+R L+ +LS+ NFP++ IH MTQ+ER
Sbjct: 276 IKLEEKEKNRKLNDLLDSLEFNQVCIFVRSVSRANELNRILSDCNFPSICIHSQMTQDER 335
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+K+Y+ FK+F KGL
Sbjct: 336 IKRYKSFKEFEKRIMVATDIFGRGIDIERVNIVINYDMPDGADSYLHRVGRAGRFGTKGL 395
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
ITF SDEND ++LN+VQ RF+V+IS LP++ID++TY+
Sbjct: 396 GITFVSDENDTEVLNDVQSRFEVNISPLPEDIDINTYM 433
>gi|384487135|gb|EIE79315.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 434
Score = 458 bits (1179), Expect = e-126, Method: Compositional matrix adjust.
Identities = 239/457 (52%), Positives = 309/457 (67%), Gaps = 84/457 (18%)
Query: 41 DDLLDYE--DEENTEQIVADGAGDALAKQ--KEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
DDL+DYE DE+ +Q D + ++ K+ KG+YV IHS+GFRDFLLKPE+LR+IV
Sbjct: 8 DDLIDYEEEDEQTLQQETIAPQTDIVEEEDKKDKKGSYVGIHSTGFRDFLLKPELLRSIV 67
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F ++++ I +++LGMD+LCQA
Sbjct: 68 DCG--------FEHPSEVQQECI------------------------PQSILGMDVLCQA 95
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY RFSKY+ +I+ VF+
Sbjct: 96 KSGMGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIKNEYARFSKYLPDIRTEVFY 155
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG+P+ KD E LK N P I+VGTPGR+LAL+R+K L LS +KHF+LDECDKMLEQL+M
Sbjct: 156 GGVPMTKDVETLKDKNKCPHILVGTPGRVLALIRDKHLKLSNVKHFVLDECDKMLEQLDM 215
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR++PH KQVMMF+ATL+K++RPVCKKFM +P+E+YVDDEAKLTLHGLQQ Y
Sbjct: 216 RRDVQDIFRATPHHKQVMMFTATLAKDMRPVCKKFMQNPLEIYVDDEAKLTLHGLQQFYK 275
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E EKN+KL +LLD LEFNQV IFV+SV+R L+ +LS+ NFP++ IH MTQ+ER+
Sbjct: 276 KLEEREKNRKLNDLLDSLEFNQVCIFVRSVSRANELNRILSDCNFPSICIHSQMTQDERI 335
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
K+Y+ FK+F KGL
Sbjct: 336 KRYKSFKEFEKRIMVATDIFGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLG 395
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
ITF SDEND ++LN+VQ RF+V+IS LP++ID++TY+
Sbjct: 396 ITFVSDENDTQVLNDVQSRFEVNISPLPEDIDINTYM 432
>gi|357135173|ref|XP_003569186.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 429
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 245/452 (54%), Positives = 296/452 (65%), Gaps = 84/452 (18%)
Query: 41 DDLLDYEDE-ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
+DL+DYE+E EN DGA A A VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 13 EDLVDYEEEVENA----VDGAA-ANASVDVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG 67
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
E + V + +P+ A+LGMD++CQAKSG
Sbjct: 68 --------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSG 95
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
MGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+S KV VF+GG+
Sbjct: 96 MGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICNEFERFSKYLSETKVAVFYGGV 155
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+K ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML+ L+MRRDVQ
Sbjct: 156 HIKKHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQ 215
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIF+ +PH KQVMMFSATLSKEIRP+CKKFM DPME+YVDDEAKLTLHGL QHY+KL E
Sbjct: 216 EIFKMTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEA 275
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KL +LLD L+FNQ+VIFVKSV R L+ LL E NFPA+ IH GMTQEERL +Y+
Sbjct: 276 EKNRKLNDLLDALDFNQIVIFVKSVGRASELNKLLCECNFPAICIHSGMTQEERLTRYKN 335
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FK+ H KGLAITF S
Sbjct: 336 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 395
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 396 SASDSDVLNQVQERFEVDIKELPEQIDTSTYM 427
>gi|384500538|gb|EIE91029.1| ATP-dependent RNA helicase uap56 [Rhizopus delemar RA 99-880]
Length = 433
Score = 455 bits (1171), Expect = e-125, Method: Compositional matrix adjust.
Identities = 235/457 (51%), Positives = 310/457 (67%), Gaps = 84/457 (18%)
Query: 41 DDLLDYE--DEENTEQIVADGAGDALAKQKEVK--GAYVSIHSSGFRDFLLKPEILRAIV 96
DDL+DYE DE+ +Q D++ ++++ G+YV IHS+GFRDFLLKPE+LR+IV
Sbjct: 7 DDLIDYEEEDEQTLQQETTAPQTDSIEEEEKKDKKGSYVGIHSTGFRDFLLKPELLRSIV 66
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F ++++ I +++LGMD+LCQA
Sbjct: 67 DCG--------FEHPSEVQQECI------------------------PQSILGMDVLCQA 94
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE + V V+++CHTRELAFQI EY RFSKY+ +I+ VF+
Sbjct: 95 KSGMGKTAVFVLATLQQLEPINGEVSVIILCHTRELAFQIKNEYARFSKYLPDIRTEVFY 154
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG+P+ KD E LK N P I+VGTPGR+LAL+R+K L LS +KHF+LDECDKMLEQL+M
Sbjct: 155 GGVPMTKDVETLKDKNKCPHILVGTPGRVLALIRDKHLKLSNVKHFVLDECDKMLEQLDM 214
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR++PH KQVMMF+ATL+K++RPVCKKFM +P+E+YVDDEAKLTLHGLQQ Y+
Sbjct: 215 RRDVQDIFRATPHHKQVMMFTATLAKDMRPVCKKFMQNPLEIYVDDEAKLTLHGLQQFYI 274
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E EKN+KL +LLD LEFNQV IFV+SV+R L+ +L++ NFP++ IH MTQ+ER+
Sbjct: 275 KLEEKEKNRKLNDLLDSLEFNQVCIFVRSVSRANELNRILTDCNFPSICIHSQMTQDERI 334
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
K+Y+ FK+F KGL
Sbjct: 335 KRYKSFKEFEKRIMVATDIFGRGIDIERVNIVINYDMPDGADSYLHRVGRAGRFGTKGLG 394
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
ITF SDEND ++LN+VQ RF+V+IS LP++ID++TY+
Sbjct: 395 ITFVSDENDTQVLNDVQSRFEVNISPLPEDIDINTYM 431
>gi|357135175|ref|XP_003569187.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 428
Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust.
Identities = 243/452 (53%), Positives = 296/452 (65%), Gaps = 84/452 (18%)
Query: 41 DDLLDYEDE-ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
+DL+DYE+E EN DG A A + VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 12 EDLVDYEEEVENA----VDGTA-ANASVEVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG 66
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
E + V + +P+ A+LGMD++CQAKSG
Sbjct: 67 --------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSG 94
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
MGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+S +V VF+GG+
Sbjct: 95 MGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICNEFERFSKYLSETRVAVFYGGV 154
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+K ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML+ L+MRRDVQ
Sbjct: 155 HIKKHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQ 214
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIF+ +PH KQVMMFSATLSKEIRP+CKKFM DPME+YVDDEAKLTLHGL QHY+KL E
Sbjct: 215 EIFKMTPHDKQVMMFSATLSKEIRPICKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEA 274
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KL +LLD L+FNQ+VIFVKSV R L+ LL E NFPA+ IH GMTQEERL +Y+
Sbjct: 275 EKNRKLNDLLDALDFNQIVIFVKSVGRASELNRLLCECNFPAICIHSGMTQEERLTRYKN 334
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FK+ H KGLAITF S
Sbjct: 335 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 394
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 395 SASDSDVLNQVQERFEVDIKELPEQIDTSTYM 426
>gi|357135163|ref|XP_003569181.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like
[Brachypodium distachyon]
Length = 428
Score = 452 bits (1164), Expect = e-124, Method: Compositional matrix adjust.
Identities = 242/451 (53%), Positives = 293/451 (64%), Gaps = 82/451 (18%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
DDL+DYE+E E +V A + VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 12 DDLVDYEEE--VENVVDAAAANPSVDV--VKKGYVGIHSSGFRDFLLKPELLRAIQDCG- 66
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
E + V + +P+ A+LGMD++CQAKSGM
Sbjct: 67 -------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSGM 95
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+S KV VF+GG+
Sbjct: 96 GKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLSETKVAVFYGGVN 155
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+ ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML+ L+MRRDVQE
Sbjct: 156 IKNHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKMLDSLDMRRDVQE 215
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E E
Sbjct: 216 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAE 275
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LLD L+FNQ+VIFVKSV R L+ LL E NFPA+ IH GMTQEERL +Y+ F
Sbjct: 276 KNRKLNDLLDALDFNQIVIFVKSVGRASELNRLLCECNFPAICIHSGMTQEERLTRYKNF 335
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+ H KGLAITF S
Sbjct: 336 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSS 395
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 396 ASDSDVLNQVQERFEVDIKELPEQIDTSTYM 426
>gi|115437444|ref|NP_001043297.1| Os01g0549700 [Oryza sativa Japonica Group]
gi|113532828|dbj|BAF05211.1| Os01g0549700, partial [Oryza sativa Japonica Group]
Length = 495
Score = 450 bits (1158), Expect = e-124, Method: Compositional matrix adjust.
Identities = 243/451 (53%), Positives = 294/451 (65%), Gaps = 80/451 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
+DL+DYE+E E GA A A VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 77 EDLVDYEEE--VENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG- 133
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+LGMD++CQAKSGM
Sbjct: 134 -------FEHPSEVQHECI------------------------PQAILGMDVICQAKSGM 162
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+ +KV VF+GG+
Sbjct: 163 GKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVH 222
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+K ++ LK P IVVGTPGRILAL R K L+L ++HFILDECDKML+ L+MRRDVQE
Sbjct: 223 IKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQE 282
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E E
Sbjct: 283 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAE 342
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFPA+SIH GMTQEERL +Y+ F
Sbjct: 343 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNF 402
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+ H KGLAITF S
Sbjct: 403 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSS 462
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 463 ASDSDVLNQVQERFEVDIKELPEQIDTSTYM 493
>gi|115437448|ref|NP_001043298.1| Os01g0550000 [Oryza sativa Japonica Group]
gi|75320875|sp|Q5JK84.1|RH15_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 15
gi|57899408|dbj|BAD88055.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|57900053|dbj|BAD88115.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|113532829|dbj|BAF05212.1| Os01g0550000 [Oryza sativa Japonica Group]
gi|215768539|dbj|BAH00768.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218188434|gb|EEC70861.1| hypothetical protein OsI_02373 [Oryza sativa Indica Group]
Length = 432
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 244/451 (54%), Positives = 295/451 (65%), Gaps = 80/451 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
+DL+DYE+E E GA A A VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 14 EDLVDYEEE--VENGADGGAAAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG- 70
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
E + V + +P+ A+LGMD++CQAKSGM
Sbjct: 71 -------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSGM 99
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+ +KV VF+GG+
Sbjct: 100 GKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVH 159
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+K ++ LK P IVVGTPGRILAL R K L+L ++HFILDECDKML+ L+MRRDVQE
Sbjct: 160 IKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQE 219
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E E
Sbjct: 220 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAE 279
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFPA+SIH GMTQEERL +Y+ F
Sbjct: 280 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNF 339
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+ H KGLAITF S
Sbjct: 340 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSS 399
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 400 ASDSDVLNQVQERFEVDIKELPEQIDTSTYM 430
>gi|222618647|gb|EEE54779.1| hypothetical protein OsJ_02176 [Oryza sativa Japonica Group]
Length = 429
Score = 450 bits (1157), Expect = e-124, Method: Compositional matrix adjust.
Identities = 241/452 (53%), Positives = 293/452 (64%), Gaps = 85/452 (18%)
Query: 41 DDLLDYEDEENTEQIVADGA-GDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
+DL+DYE+E V +G G A YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 14 EDLVDYEEE------VENGTDGGAQRPPTPPPMGYVGIHSSGFRDFLLKPELLRAIQDCG 67
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
E + V + +P+ A+LGMD++CQAKSG
Sbjct: 68 --------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSG 95
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
MGKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+ +KV VF+GG+
Sbjct: 96 MGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGV 155
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+K ++ LK P IVVGTPGRILAL R K L+L ++HFILDECDKML+ L+MRRDVQ
Sbjct: 156 HIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQ 215
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E
Sbjct: 216 EIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEA 275
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFPA+SIH GMTQEERL +Y+
Sbjct: 276 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKN 335
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FK+ H KGLAITF S
Sbjct: 336 FKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVS 395
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 396 SASDSDVLNQVQERFEVDIKELPEQIDTSTYM 427
>gi|321475028|gb|EFX85992.1| hypothetical protein DAPPUDRAFT_309072 [Daphnia pulex]
Length = 425
Score = 449 bits (1156), Expect = e-123, Method: Compositional matrix adjust.
Identities = 249/455 (54%), Positives = 298/455 (65%), Gaps = 82/455 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADN+D L EDEE TE++ +G GDA AK K VKG +SIHSS F+D + KPEILRAIV
Sbjct: 1 MADNEDPLVCEDEEVTERVAIEGIGDAPAKGK-VKG--ISIHSSRFQDSVFKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E ++ V +P+ AVLGMD+LC+A
Sbjct: 58 DCG--------------FEHLSEVQRECLPQ------------------AVLGMDVLCRA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSG GKT VFVLATLQQLET ++ V VLV+CH+RELA QI YE SK+M+ IKVGVF
Sbjct: 86 KSGTGKTTVFVLATLQQLETVENQVCVLVVCHSRELAIQIYNAYECLSKHMTTIKVGVFV 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I+KDEE LKT+ P IVVGTPGR+ L+R K+LNL LKHF+LDECDKML+ M R
Sbjct: 146 GGVNIRKDEEALKTNCPHIVVGTPGRLTTLLRTKRLNLRTLKHFVLDECDKMLQDTYMLR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV-DDEAKLTLHGLQQHYVK 335
DVQEIF ++P KQVMMFSATLSKEIRPVC+KFM DP EV V DDE+K TL GLQQHYVK
Sbjct: 206 DVQEIFSNTPREKQVMMFSATLSKEIRPVCQKFMQDPTEVDVDDDESKHTLRGLQQHYVK 265
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
LK++EKN KLFELL VLEFNQVVIFV+S+ RC+AL L EQN PA++IH MT+ ERL
Sbjct: 266 LKDDEKNGKLFELLGVLEFNQVVIFVRSIARCMALCESLGEQNLPAIAIHLSMTEAERLS 325
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ+F D +GL I
Sbjct: 326 RYQQFNDSKERILVATHWEGRGMAIERVNIVFNYDMPENSDRYLDRVAYAGRFGTQGLGI 385
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
TF +DE DAK+LN+VQ+RFDVSI+ L DEI LS++
Sbjct: 386 TFVTDEKDAKVLNDVQERFDVSITPLSDEIYLSSH 420
>gi|143456603|sp|Q0JM17.2|RH56_ORYSJ RecName: Full=DEAD-box ATP-dependent RNA helicase 56
gi|57899406|dbj|BAD88053.1| putative HLA-B associated transcript 1 [Oryza sativa Japonica
Group]
gi|215695226|dbj|BAG90417.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258618301|gb|ACV83946.1| DExD box helicase protein HLA-B associated transcript 1 [Oryza
sativa Japonica Group]
Length = 432
Score = 449 bits (1154), Expect = e-123, Method: Compositional matrix adjust.
Identities = 244/451 (54%), Positives = 295/451 (65%), Gaps = 80/451 (17%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
+DL+DYE+E E GA A A VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 14 EDLVDYEEE--VENGTDGGANAANASADVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG- 70
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
E + V + +P+ A+LGMD++CQAKSGM
Sbjct: 71 -------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSGM 99
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+ +KV VF+GG+
Sbjct: 100 GKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPEVKVAVFYGGVH 159
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
I+K ++ LK P IVVGTPGRILAL R K L+L ++HFILDECDKML+ L+MRRDVQE
Sbjct: 160 IKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKMLDSLDMRRDVQE 219
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E E
Sbjct: 220 IFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAE 279
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFPA+SIH GMTQEERL +Y+ F
Sbjct: 280 KNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMTQEERLTRYKNF 339
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+ H KGLAITF S
Sbjct: 340 KEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGLAITFVSS 399
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 400 ASDSDVLNQVQERFEVDIKELPEQIDTSTYM 430
>gi|413948693|gb|AFW81342.1| spliceosome RNA helicase BAT1 isoform 1 [Zea mays]
gi|413948694|gb|AFW81343.1| spliceosome RNA helicase BAT1 isoform 2 [Zea mays]
gi|413948695|gb|AFW81344.1| spliceosome RNA helicase BAT1 isoform 3 [Zea mays]
Length = 429
Score = 447 bits (1150), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/432 (54%), Positives = 285/432 (65%), Gaps = 79/432 (18%)
Query: 61 GDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
G A EV K YV IHSSGFRDFLLKPE+LRAI DC E +
Sbjct: 28 GSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELLRAIQDCG--------------FEHPSE 73
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
V + +P+ A+LGMD++CQAKSGMGKTAVFVL++LQQ++
Sbjct: 74 VQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAG 115
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
V LV+CHTRELA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IVVGT
Sbjct: 116 QVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVGT 175
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL R+K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLS
Sbjct: 176 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 235
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVI
Sbjct: 236 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVI 295
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------- 404
FVKSV+R L+ LL E NFP++ IH GMTQEERL +Y+ FK+ H
Sbjct: 296 FVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHKRILVATDLVGRGID 355
Query: 405 -------------------------------KGLAITFASDENDAKILNNVQDRFDVSIS 433
KGLAITF S +D+ +LN VQ+RF+V I
Sbjct: 356 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIK 415
Query: 434 ELPDEIDLSTYI 445
ELP++ID STY+
Sbjct: 416 ELPEQIDTSTYM 427
>gi|226506726|ref|NP_001141599.1| uncharacterized protein LOC100273717 [Zea mays]
gi|224032233|gb|ACN35192.1| unknown [Zea mays]
Length = 429
Score = 446 bits (1148), Expect = e-123, Method: Compositional matrix adjust.
Identities = 235/432 (54%), Positives = 284/432 (65%), Gaps = 79/432 (18%)
Query: 61 GDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
G A EV K YV IHSSGFRDFLLKPE+LRAI DC E +
Sbjct: 28 GSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELLRAIQDCG--------------FEHPSE 73
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
V + +P+ A+LGMD++CQAKSGMGKTAVFVL++LQQ++
Sbjct: 74 VQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAG 115
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
V LV+CHTRELA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IVVGT
Sbjct: 116 QVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVGT 175
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL R+K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLS
Sbjct: 176 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 235
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVI
Sbjct: 236 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVI 295
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------- 404
FVKSV+R L+ LL E NFP++ IH GMTQEERL Y+ FK+ H
Sbjct: 296 FVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTSYKNFKEGHKRILVATDLVGRGID 355
Query: 405 -------------------------------KGLAITFASDENDAKILNNVQDRFDVSIS 433
KGLAITF S +D+ +LN VQ+RF+V I
Sbjct: 356 IERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIK 415
Query: 434 ELPDEIDLSTYI 445
ELP++ID STY+
Sbjct: 416 ELPEQIDTSTYM 427
>gi|413950345|gb|AFW82994.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
Length = 446
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 241/452 (53%), Positives = 293/452 (64%), Gaps = 85/452 (18%)
Query: 41 DDLLDYEDE-ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
+DL+DYE+E EN V DGA VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 31 EDLVDYEEEVEN----VIDGAPTN-GSSDVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG 85
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
F +++ I +A+LGMD++CQAKSG
Sbjct: 86 --------FEHPSEVQHECI------------------------PQAILGMDVICQAKSG 113
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
MGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+ ++V VF+GG+
Sbjct: 114 MGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPELRVAVFYGGV 173
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+ ++ LK P IVVGTPGRILAL R+K L L ++HFILDECDKMLE L+MRRDVQ
Sbjct: 174 HIKNHKDLLKNECPHIVVGTPGRILALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQ 233
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIF+ +PH KQVMMFSATLSKEIRPVCK+FM DPME+YVDDEAKLTLHGL QHY+KL E
Sbjct: 234 EIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEA 293
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GMTQEERL +Y+
Sbjct: 294 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKN 353
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FK+ H KGLAITF S
Sbjct: 354 FKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 413
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 414 -SSDSDVLNQVQERFEVDIKELPEQIDTSTYM 444
>gi|293331927|ref|NP_001170610.1| uncharacterized protein LOC100384654 [Zea mays]
gi|238006354|gb|ACR34212.1| unknown [Zea mays]
gi|413950343|gb|AFW82992.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
gi|413950344|gb|AFW82993.1| hypothetical protein ZEAMMB73_566534 [Zea mays]
Length = 427
Score = 446 bits (1146), Expect = e-122, Method: Compositional matrix adjust.
Identities = 242/452 (53%), Positives = 294/452 (65%), Gaps = 85/452 (18%)
Query: 41 DDLLDYEDE-ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
+DL+DYE+E EN V DGA VK YV IHSSGFRDFLLKPE+LRAI DC
Sbjct: 12 EDLVDYEEEVEN----VIDGAPTN-GSSDVVKKGYVGIHSSGFRDFLLKPELLRAIQDCG 66
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
E + V + +P+ A+LGMD++CQAKSG
Sbjct: 67 --------------FEHPSEVQHECIPQ------------------AILGMDVICQAKSG 94
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
MGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+ ++V VF+GG+
Sbjct: 95 MGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPELRVAVFYGGV 154
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I+ ++ LK P IVVGTPGRILAL R+K L L ++HFILDECDKMLE L+MRRDVQ
Sbjct: 155 HIKNHKDLLKNECPHIVVGTPGRILALARDKDLPLKNVRHFILDECDKMLESLDMRRDVQ 214
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
EIF+ +PH KQVMMFSATLSKEIRPVCK+FM DPME+YVDDEAKLTLHGL QHY+KL E
Sbjct: 215 EIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEA 274
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GMTQEERL +Y+
Sbjct: 275 EKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKN 334
Query: 400 FKDFH----------------------------------------------KGLAITFAS 413
FK+ H KGLAITF S
Sbjct: 335 FKEGHKRILVATDLVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVS 394
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 395 -SSDSDVLNQVQERFEVDIKELPEQIDTSTYM 425
>gi|325183657|emb|CCA18117.1| predicted protein putative [Albugo laibachii Nc14]
Length = 426
Score = 445 bits (1144), Expect = e-122, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 278/421 (66%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
KG YV IHSSGFRDF+LKPE LRA+VDC E + V + +P+
Sbjct: 36 KGHYVGIHSSGFRDFILKPECLRAVVDCG--------------FEHPSEVQHECIPQ--- 78
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
AVLGMDI+CQAKSGMGKTAVFVLATL Q+E D + V+V+CHTR
Sbjct: 79 ---------------AVLGMDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVMVLCHTR 123
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELAFQI+ EYERFSKY+ N+K VF+GG+ I KD + LK++ P IVVGTPGRIL L+R K
Sbjct: 124 ELAFQIAHEYERFSKYLHNVKTAVFYGGIAITKDRDTLKSNTPHIVVGTPGRILGLLREK 183
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
+ L +KHF++DECDK+LE L+MRRDVQEIFRS+PH KQVMMFSATLSKEIRPVC+KF
Sbjct: 184 SIKLDKVKHFVMDECDKLLEALDMRRDVQEIFRSTPHDKQVMMFSATLSKEIRPVCRKFC 243
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDE KLTLHGLQQ+Y+KL E+EKN+KL ELLD LEFNQVVIFV R L
Sbjct: 244 QDPMEIYVDDETKLTLHGLQQYYIKLAESEKNRKLNELLDALEFNQVVIFVSKKNRAREL 303
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
+ LL+E NFPA+ I +TQEER+K+Y+ FKDF
Sbjct: 304 NRLLNECNFPAICITSDLTQEERIKRYKSFKDFQKRLLVTTDLFGRGMDIERVNIVINYD 363
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGL+I+F S + D+ +L VQ RF+V++ ELPD ID+STY
Sbjct: 364 FPNDSDQYLHRVGRAGRFGTKGLSISFISSDEDSAMLAQVQSRFEVNVPELPDSIDISTY 423
Query: 445 I 445
+
Sbjct: 424 M 424
>gi|390603969|gb|EIN13360.1| ATP-dependent RNA helicase SUB2 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 434
Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust.
Identities = 238/460 (51%), Positives = 293/460 (63%), Gaps = 85/460 (18%)
Query: 39 DNDDLLDYEDEEN--TEQIVADG---AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
DN++L+DYEDE + T + ++G AG + K + IHS+GFRDFLLKPE+LR
Sbjct: 5 DNEELIDYEDEADVGTGAVASNGVAVAGATADGDDKDKKNFSGIHSTGFRDFLLKPELLR 64
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D + E + V +P+ AVLGMD+L
Sbjct: 65 AISD--------------LGFEHPSEVQQECIPQ------------------AVLGMDVL 92
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM +++V
Sbjct: 93 CQAKSGHGKTAVFVLATLQQLEPVNGQVSVLVLCHTRELAFQIKNEYARFAKYMPDVRVA 152
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
FFGG+P+ KD E L K P IVV TPGR+ ALVR+K L+ +KHF+LDECDKMLEQ
Sbjct: 153 TFFGGVPVTKDAETLRDKAKCPHIVVATPGRLNALVRDKTLDAKNVKHFVLDECDKMLEQ 212
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR++PH KQVMMFSATLSKEIR CKKFM +P+E++VDDE KLTLHGLQQ
Sbjct: 213 LDMRRDVQEIFRATPHHKQVMMFSATLSKEIRVTCKKFMANPLEIFVDDETKLTLHGLQQ 272
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
HYVKL+EN+KN+KL ELLD LEFNQVVIFVKSV RCI L LL NFP++SIH G+ Q
Sbjct: 273 HYVKLEENQKNRKLNELLDTLEFNQVVIFVKSVARCIELDKLLVSCNFPSISIHSGLDQV 332
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+ +Y FK F K
Sbjct: 333 ERINRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDSPADADSYLHRVGRAGRFGTK 392
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAITF S E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 393 GLAITFVSSESDTQVMAAIQSRFEVAVPELPDHIDPASYM 432
>gi|323455519|gb|EGB11387.1| hypothetical protein AURANDRAFT_52520 [Aureococcus anophagefferens]
Length = 459
Score = 443 bits (1139), Expect = e-121, Method: Compositional matrix adjust.
Identities = 235/441 (53%), Positives = 284/441 (64%), Gaps = 89/441 (20%)
Query: 60 AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
GD + K KG YV IH+SGFRDF+LKPE LRA+VDC E +
Sbjct: 52 GGDEAKEAK--KGHYVGIHASGFRDFILKPECLRAVVDCG--------------FEHPSE 95
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
V + +P+ AVLGMDI+CQAKSGMGKTAVFVLATL QLE D
Sbjct: 96 VQHECIPQ------------------AVLGMDIICQAKSGMGKTAVFVLATLHQLEPVDG 137
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
+ VLVMCHTRELAFQI EY RFSKY+ +KV VF+GG+PI +++ LK + P IVVGT
Sbjct: 138 EISVLVMCHTRELAFQIKNEYARFSKYLPAVKVEVFYGGVPITQNKAALKANTPHIVVGT 197
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRIL LV++K L L LKHF++DECD+MLE L+MR+D+QEIFR++PH KQVMMFSATLS
Sbjct: 198 PGRILGLVKSKDLVLGKLKHFVMDECDRMLEALDMRKDIQEIFRTTPHQKQVMMFSATLS 257
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVCKKF DPME+YVDD+ KLTLHGLQQ+YVKL+E EKN+KL +LLD L+FNQVVI
Sbjct: 258 KEIRPVCKKFCQDPMEIYVDDDTKLTLHGLQQYYVKLQEAEKNRKLNDLLDALDFNQVVI 317
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHK-------------- 405
FV V R L LL E NFP+V IH GMTQEER+ +Y++FKDF K
Sbjct: 318 FVSKVARATELDRLLCECNFPSVCIHSGMTQEERITRYKDFKDFKKRILVSTDLFGRGID 377
Query: 406 -----------------GLAITFASDE------------------------NDAKILNNV 424
G A T ASD+ DA+IL V
Sbjct: 378 IERVNIVINYDFPEVKEGAAQTTASDQYLHRVGRAGRFGTKGLSISFISSKEDAEILAAV 437
Query: 425 QDRFDVSISELPDEIDLSTYI 445
Q RF+V++SELPD+ID+S+Y+
Sbjct: 438 QSRFEVNVSELPDQIDISSYM 458
>gi|294461150|gb|ADE76139.1| unknown [Picea sitchensis]
Length = 427
Score = 442 bits (1136), Expect = e-121, Method: Compositional matrix adjust.
Identities = 234/439 (53%), Positives = 283/439 (64%), Gaps = 84/439 (19%)
Query: 53 EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGM 112
E + A GAG+ VK YV IHSSGFRDFLLKPE+LRAIVD
Sbjct: 25 ESVAARGAGET------VKKGYVGIHSSGFRDFLLKPELLRAIVDSG------------- 65
Query: 113 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQ 172
E + V + +P+ A+LGMD++CQAKSGMGKTAVFVL+TLQ
Sbjct: 66 -FEHPSEVQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQ 106
Query: 173 QLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232
Q+E V LV+CHTRELA+QI E+ERF Y++++KV VF+GG+ I+ + LK
Sbjct: 107 QIEPVAGQVAALVLCHTRELAYQICHEFERFITYLTDLKVAVFYGGVNIKTHKSLLKNEC 166
Query: 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVM 292
P IVVGTPGRILAL R K LNL ++HFILDECD+MLE L+MR+DVQEIF+ +PH KQVM
Sbjct: 167 PHIVVGTPGRILALAREKDLNLKNVRHFILDECDRMLESLDMRKDVQEIFKMTPHDKQVM 226
Query: 293 MFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL 352
MFSATLSKEIRPVCK+FM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L
Sbjct: 227 MFSATLSKEIRPVCKRFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDAL 286
Query: 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------- 404
+FNQVVIFVKSV R L+ LL E NFP++ IH GMTQEERL +Y+ FK+ H
Sbjct: 287 DFNQVVIFVKSVNRAAELNKLLVECNFPSICIHSGMTQEERLTRYKGFKEGHKRILVATD 346
Query: 405 --------------------------------------KGLAITFASDENDAKILNNVQD 426
KGLAITF S +D+ +LN VQ+
Sbjct: 347 LVGRGIDIERVNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQE 406
Query: 427 RFDVSISELPDEIDLSTYI 445
RF+V I ELP +ID STY+
Sbjct: 407 RFEVDIKELPAQIDTSTYM 425
>gi|225442993|ref|XP_002268833.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56 [Vitis vinifera]
gi|297743441|emb|CBI36308.3| unnamed protein product [Vitis vinifera]
Length = 428
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/427 (54%), Positives = 279/427 (65%), Gaps = 78/427 (18%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A + K YV IHSSGFRDFLLKPE+LR+IVD E + V +
Sbjct: 32 AAGESAKKGYVGIHSSGFRDFLLKPELLRSIVDSG--------------FEHPSEVQHEC 77
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
+P+ A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V L
Sbjct: 78 IPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAL 119
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
V+CHTRELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL
Sbjct: 120 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRIL 179
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL R+K L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRP
Sbjct: 180 ALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 239
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV
Sbjct: 240 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV 299
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
+R L+ LL E NFP++ IH GM QEERL +Y+ FK+ H
Sbjct: 300 SRAAELNKLLMECNFPSICIHSGMPQEERLTRYKNFKEGHKRILVATDLVGRGIDIERVN 359
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF S +D+ +LN VQ+RF+V I ELP++
Sbjct: 360 IVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQ 419
Query: 439 IDLSTYI 445
ID STY+
Sbjct: 420 IDTSTYM 426
>gi|224092470|ref|XP_002309623.1| predicted protein [Populus trichocarpa]
gi|222855599|gb|EEE93146.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/422 (54%), Positives = 280/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LR+IVD E + V + +P+
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELLRSIVDSG--------------FEHPSEVQHECIPQ-- 80
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHT
Sbjct: 81 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+
Sbjct: 125 RELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILALARD 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 185 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 244
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 245 MQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 304
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 LNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 364
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 365 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTST 424
Query: 444 YI 445
Y+
Sbjct: 425 YM 426
>gi|409191772|gb|AFV30230.1| ATP-dependent RNA helicase [Medicago sativa]
Length = 427
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 281/421 (66%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTR
Sbjct: 80 ---------------AILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y++++KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K
Sbjct: 125 ELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L+L ++HFILDECDKMLE L+MR+DVQ+IF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL++LLD L+FNQVVIFVKSV+R L
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLYDLLDALDFNQVVIFVKSVSRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 305 DKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D +LNNVQ RF+V I +LP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|168035593|ref|XP_001770294.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678511|gb|EDQ64969.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 425
Score = 441 bits (1135), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/422 (54%), Positives = 280/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVDC E + V + +P+
Sbjct: 34 VKKGYVGIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHECIPQ-- 77
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHT
Sbjct: 78 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHT 121
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL L R+
Sbjct: 122 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILGLARD 181
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCK+F
Sbjct: 182 KDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKRF 241
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 242 MQDPMEIYVDDEAKLTLHGLVQHYIKLGEVEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 301
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 302 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 361
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+ +LN VQ+RF+V I ELP++ID +T
Sbjct: 362 DMPDSADTYLHRVGRAGRFGTKGLAITFVASPSDSDVLNQVQERFEVDIKELPEQIDTTT 421
Query: 444 YI 445
Y+
Sbjct: 422 YM 423
>gi|213409820|ref|XP_002175680.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
yFS275]
gi|212003727|gb|EEB09387.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces japonicus
yFS275]
Length = 434
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/461 (49%), Positives = 299/461 (64%), Gaps = 86/461 (18%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEV------KGAYVSIHSSGFRDFLLKPEILRA 94
+DL+DYE+EE Q+ A A+ E KG+YV IHS+GFRDFLLKPE+LRA
Sbjct: 6 EDLIDYEEEEELTQVDNTAGQTAAAESTESAEKADKKGSYVGIHSTGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D F ++++V I +++LG D+LC
Sbjct: 66 ITDSG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRELAFQI EY RFSKY+ +++ V
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAV 153
Query: 215 FFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG+ I++D E K + +P IVV TPGR+ ALVR K L ++ +KHF+LDECDK+LE +
Sbjct: 154 FYGGVNIKQDMEAFKDKSTSPHIVVATPGRLNALVREKILRVNNVKHFVLDECDKLLEAV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRD+QE+FR++P KQVMMFSATLS EIRP+CKKFM +P+E+YVDDE KLTLHGLQQH
Sbjct: 214 DMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQH 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
YVKL E KN+KL +LLD LEFNQVVIFVKSV+R AL LL E +FP++ IH G+ Q+E
Sbjct: 274 YVKLDEKAKNRKLNDLLDSLEFNQVVIFVKSVSRANALDRLLRECSFPSICIHGGLPQDE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+K+Y+ FKDF KG
Sbjct: 334 RIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
LAITF + + D+++L+ +Q+RF+V+I+ELPDEID+S+Y+
Sbjct: 394 LAITFVTTDEDSQVLDKIQERFEVNITELPDEIDVSSYMNA 434
>gi|19115173|ref|NP_594261.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe 972h-]
gi|59800426|sp|O13792.3|SUB2_SCHPO RecName: Full=ATP-dependent RNA helicase uap56
gi|2408027|emb|CAB16225.1| ATP-dependent RNA helicase Uap56 [Schizosaccharomyces pombe]
Length = 434
Score = 441 bits (1133), Expect = e-121, Method: Compositional matrix adjust.
Identities = 231/459 (50%), Positives = 300/459 (65%), Gaps = 86/459 (18%)
Query: 41 DDLLDYEDEE-----NTEQIVADGAGDALAKQK-EVKGAYVSIHSSGFRDFLLKPEILRA 94
+DL+DYE+EE Q + A A +K + KG+YV IHS+GFRDFLLKPE+LRA
Sbjct: 6 EDLIDYEEEEELVQDQPAQEITPAADTAENGEKSDKKGSYVGIHSTGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D F ++++V I +++LG D+LC
Sbjct: 66 ITDSG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRELAFQI EY RFSKY+ +++ V
Sbjct: 94 QAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAV 153
Query: 215 FFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG+ I++D E K + +P IVV TPGR+ ALVR K L ++ +KHF+LDECDK+LE +
Sbjct: 154 FYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDECDKLLESV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRD+QE+FR++P KQVMMFSATLS EIRP+CKKFM +P+E+YVDDE KLTLHGLQQH
Sbjct: 214 DMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQH 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
YVKL+E KN+K+ +LLD LEFNQVVIFVKSV+R L LL E NFP++ IH G+ QEE
Sbjct: 274 YVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+K+Y+ FKDF KG
Sbjct: 334 RIKRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
LAITF+S E D++IL+ +Q+RF+V+I+ELPDEID+ +Y+
Sbjct: 394 LAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
>gi|356507736|ref|XP_003522620.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 427
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/434 (53%), Positives = 284/434 (65%), Gaps = 79/434 (18%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D AG + + KG YV IHSSGFRDFLLKPE+LRAIVD E
Sbjct: 25 DSAGAKVNGEATKKG-YVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHP 69
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 177
+ V + +P+ A+LGMD++CQAKSGMGKTAVFVL+TLQQ++
Sbjct: 70 SEVQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQQIDPV 111
Query: 178 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237
V LV+CHTRELA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IVV
Sbjct: 112 PGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVV 171
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGRILAL R+K L+L ++HFILDECDKMLE L+MR+DVQ+IF+ +PH KQVMMFSAT
Sbjct: 172 GTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSAT 231
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
LSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL +LLD L+FNQV
Sbjct: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQV 291
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------- 404
VIFVKSV+R L LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 292 VIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRG 351
Query: 405 ---------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431
KGLAITF S D +LNNVQ RF+V
Sbjct: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVD 411
Query: 432 ISELPDEIDLSTYI 445
I +LP++ID STY+
Sbjct: 412 IKQLPEQIDTSTYM 425
>gi|356515448|ref|XP_003526412.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform 1
[Glycine max]
gi|356515450|ref|XP_003526413.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like isoform 2
[Glycine max]
Length = 427
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 233/434 (53%), Positives = 284/434 (65%), Gaps = 79/434 (18%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D AG + + KG YV IHSSGFRDFLLKPE+LRAIVD E
Sbjct: 25 DSAGAKVNGEATKKG-YVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHP 69
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 177
+ V + +P+ A+LGMD++CQAKSGMGKTAVFVL+TLQQ++
Sbjct: 70 SEVQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQQIDPV 111
Query: 178 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237
V LV+CHTRELA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IVV
Sbjct: 112 PGQVSALVLCHTRELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPHIVV 171
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGRILAL R+K L+L ++HFILDECDKMLE L+MR+DVQ+IF+ +PH KQVMMFSAT
Sbjct: 172 GTPGRILALTRDKDLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSAT 231
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
LSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL +LLD L+FNQV
Sbjct: 232 LSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQV 291
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------- 404
VIFVKSV+R L LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 292 VIFVKSVSRAAELDKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRG 351
Query: 405 ---------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431
KGLAITF S D +LNNVQ RF+V
Sbjct: 352 IDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSTDVDVLNNVQSRFEVD 411
Query: 432 ISELPDEIDLSTYI 445
I +LP++ID STY+
Sbjct: 412 IKQLPEQIDTSTYM 425
>gi|168059571|ref|XP_001781775.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162666777|gb|EDQ53423.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 432
Score = 440 bits (1132), Expect = e-121, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 278/421 (66%), Gaps = 78/421 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVDC E + V + +P+
Sbjct: 34 VKKGYVGIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHECIPQ-- 77
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHT
Sbjct: 78 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAALVLCHT 121
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL L R+
Sbjct: 122 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILGLARD 181
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCK+F
Sbjct: 182 KDLSLKSVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKRF 241
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 242 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEVEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 301
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 302 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 361
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + D+ +LN VQ+RF+V I ELP++ID +T
Sbjct: 362 DMPDSADTYLHRVGRAGRFGTKGLAITFVASAPDSNVLNQVQERFEVDIKELPEQIDTTT 421
Query: 444 Y 444
Y
Sbjct: 422 Y 422
>gi|302772815|ref|XP_002969825.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
gi|300162336|gb|EFJ28949.1| hypothetical protein SELMODRAFT_146823 [Selaginella moellendorffii]
Length = 428
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 278/422 (65%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE++RAIVDC ++ P S
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELVRAIVDC-----------------------GFEHP--S 71
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
+ + +A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHT
Sbjct: 72 EVQFECIP-------QAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL L R
Sbjct: 125 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILQLTRE 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K+L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCK+F
Sbjct: 185 KELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKRF 244
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV R
Sbjct: 245 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVNRAAE 304
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 364
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 365 DMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQERFEVDIKELPEQIDTST 424
Query: 444 YI 445
Y+
Sbjct: 425 YM 426
>gi|302806860|ref|XP_002985161.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
gi|300146989|gb|EFJ13655.1| hypothetical protein SELMODRAFT_446187 [Selaginella moellendorffii]
Length = 473
Score = 440 bits (1131), Expect = e-121, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE++RAIVDC ++ P S
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELVRAIVDC-----------------------GFEHP--S 71
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
+ + +A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHT
Sbjct: 72 EVQFECIP-------QAILGMDVICQAKSGMGKTAVFVLSTLQQIEPLKGQVAALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL L R
Sbjct: 125 RELAYQICHEFERFSTYLPDIKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILQLTRE 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K+L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCK+F
Sbjct: 185 KELSLKGVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKRF 244
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV R
Sbjct: 245 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVNRAAE 304
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 LNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 364
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 365 DMPESADTYLHRVGRAGRFGTKGLAITFVASSTDSNVLNQVQERFEVDIKELPEQIDTST 424
Query: 444 Y 444
Y
Sbjct: 425 Y 425
>gi|224143128|ref|XP_002324856.1| predicted protein [Populus trichocarpa]
gi|222866290|gb|EEF03421.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/422 (54%), Positives = 280/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LR+IVD E + V + +P+
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELLRSIVDSG--------------FEHPSEVQHECIPQ-- 80
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHT
Sbjct: 81 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ + KV VF+GG+ ++ ++ LK P +VVGTPGRILAL R+
Sbjct: 125 RELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVVVGTPGRILALARD 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 185 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKF 244
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 245 MQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 304
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 LNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVNIVINY 364
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 365 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTST 424
Query: 444 YI 445
Y+
Sbjct: 425 YM 426
>gi|357436963|ref|XP_003588757.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355477805|gb|AES59008.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 427
Score = 439 bits (1130), Expect = e-120, Method: Compositional matrix adjust.
Identities = 229/421 (54%), Positives = 280/421 (66%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTR
Sbjct: 80 ---------------AILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y++++KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K
Sbjct: 125 ELAYQICHEFERFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L+L ++HFILDECDKMLE L+MR+DVQ+IF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 305 DKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D +LNNVQ RF+V I +LP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|317106728|dbj|BAJ53224.1| JHL06P13.3 [Jatropha curcas]
Length = 455
Score = 439 bits (1129), Expect = e-120, Method: Compositional matrix adjust.
Identities = 233/428 (54%), Positives = 278/428 (64%), Gaps = 78/428 (18%)
Query: 63 ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFN 122
A A + K YV IHSSGFRDFLLKPE+LRAIVD E + V +
Sbjct: 30 AKAGAESAKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQH 75
Query: 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY 182
+P+ A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V
Sbjct: 76 ECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVA 117
Query: 183 VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGR 242
LV+CHTRELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGR
Sbjct: 118 ALVLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVNIKVHKDILKNECPHIVVGTPGR 177
Query: 243 ILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302
ILAL R+K L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEI
Sbjct: 178 ILALARDKDLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEI 237
Query: 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVK 362
RPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVK
Sbjct: 238 RPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLTEMEKNRKLNDLLDALDFNQVVIFVK 297
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------ 404
SV R L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 298 SVNRAAELNKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIER 357
Query: 405 ----------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KGLAITF S +D+ +LN VQ RF+V I ELP
Sbjct: 358 VNIVVNYDMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELP 417
Query: 437 DEIDLSTY 444
++ID STY
Sbjct: 418 EQIDTSTY 425
>gi|301117800|ref|XP_002906628.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
gi|262107977|gb|EEY66029.1| DEAD/DEAH box RNA helicase, putative [Phytophthora infestans T30-4]
Length = 455
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 224/422 (53%), Positives = 281/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
+ G YV IHSSGFRDF+LKPE LRA+VDC E + V + +P+
Sbjct: 64 MPGHYVGIHSSGFRDFILKPECLRAVVDCG--------------FEHPSEVQHECIPQ-- 107
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
AVLGMDI+CQAKSGMGKTAVFVLATL Q+E D + V+VMCHT
Sbjct: 108 ----------------AVLGMDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVVMCHT 151
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELAFQI+ EYERFSKY+ ++K GVF+GG+PI ++ E LK + P I+VGTPGRIL L+R
Sbjct: 152 RELAFQIAHEYERFSKYLVDVKTGVFYGGVPISQNREALKNNPPHILVGTPGRILGLLRE 211
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L L +KHF++DECDKMLE ++MRRD+QEIF+++PH KQVMMFSATLSKEIRPVC+KF
Sbjct: 212 KTLKLDKVKHFVMDECDKMLEAIDMRRDIQEIFKATPHDKQVMMFSATLSKEIRPVCRKF 271
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
DPME+YVDDE KLTLHGLQQ+Y+KL+E+EKN+KL +LLD LEFNQVVIFV R
Sbjct: 272 CQDPMEIYVDDETKLTLHGLQQYYIKLEESEKNRKLNDLLDALEFNQVVIFVSKKNRGRE 331
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL+E NFP++ I ++QEER+K+Y+ FKDF
Sbjct: 332 LNRLLNECNFPSICITADLSQEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNY 391
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGL+I+F S E D ++L VQ RF+V+I ELPD+ID+ST
Sbjct: 392 DFPNDSDQYLHRVGRAGRFGTKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDIST 451
Query: 444 YI 445
Y+
Sbjct: 452 YM 453
>gi|225430261|ref|XP_002285072.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Vitis
vinifera]
Length = 428
Score = 439 bits (1128), Expect = e-120, Method: Compositional matrix adjust.
Identities = 231/421 (54%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 38 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 80
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V LV+CHTR
Sbjct: 81 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTR 125
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K
Sbjct: 126 ELAYQICHEFERFSTYLPDIKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDK 185
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 186 DLALKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 245
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 246 QDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 305
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
+ LL E NFP++ IH GM QEERL +Y+ FK+ H
Sbjct: 306 NKLLVECNFPSICIHSGMPQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYD 365
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID STY
Sbjct: 366 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTY 425
Query: 445 I 445
+
Sbjct: 426 M 426
>gi|118482305|gb|ABK93079.1| unknown [Populus trichocarpa]
Length = 428
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/422 (54%), Positives = 279/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LR+IVD E + V + +P+
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELLRSIVDSG--------------FEHPSEVQHECIPQ-- 80
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHT
Sbjct: 81 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+
Sbjct: 125 RELAYQICHEFERFSTYLPDTKVAVFYGGVNIKTHKDLLKNECPHIVVGTPGRILALARD 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 185 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 244
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LL L+FNQVVIFVKSV+R
Sbjct: 245 MQDPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLGALDFNQVVIFVKSVSRAAE 304
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 LNKLLVECNFPSICIHSGMSQEERLMRYKGFKEGHKRILVATDLVGRGIDIERVDIVINY 364
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 365 DMPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTST 424
Query: 444 YI 445
Y+
Sbjct: 425 YM 426
>gi|336374429|gb|EGO02766.1| hypothetical protein SERLA73DRAFT_150394 [Serpula lacrymans var.
lacrymans S7.3]
Length = 2522
Score = 438 bits (1127), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/462 (51%), Positives = 289/462 (62%), Gaps = 88/462 (19%)
Query: 39 DNDDLLDYEDEEN---TEQIVADGAGDALAKQKEVKG-----AYVSIHSSGFRDFLLKPE 90
DN+DL+DYEDE + V G ALA + +G + IHS+GFRDFLLKPE
Sbjct: 5 DNEDLIDYEDENDLPTNGAAVPSSNGAALATAVDGEGDKEKKNFSGIHSTGFRDFLLKPE 64
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI D + E + V +P+ AVLGM
Sbjct: 65 LLRAISD--------------LGFEHPSEVQQECIPQ------------------AVLGM 92
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM ++
Sbjct: 93 DVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDV 152
Query: 211 KVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+V F+GG P+ KD E L KT P IVV TPGR+ AL R+K L+ +KHF+LDECDKM
Sbjct: 153 RVSTFYGGTPVAKDSEILRDKTKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKM 212
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTLHG
Sbjct: 213 LEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDETKLTLHG 272
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQHYVKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G+
Sbjct: 273 LQQHYVKLEETGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGL 332
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
QEER+K+Y FK F
Sbjct: 333 QQEERIKRYTAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGRF 392
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAIT S E+D +++ +Q RF+V++SELP+ ID ++Y
Sbjct: 393 GTKGLAITCVSSESDQQVMAAIQSRFEVAVSELPEHIDPASY 434
>gi|388584005|gb|EIM24306.1| P-loop containing nucleoside triphosphate hydrolase protein
[Wallemia sebi CBS 633.66]
Length = 427
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 237/457 (51%), Positives = 291/457 (63%), Gaps = 80/457 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADN+DL+DYE+EE Q A K+ KG+YV IHS+GFRDFLLKPE+LRAI
Sbjct: 1 MADNEDLIDYEEEEVAPQQQQQQQPTEQADAKDKKGSYVGIHSTGFRDFLLKPELLRAIS 60
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D + E + V +P+ A+LGMD++CQA
Sbjct: 61 D--------------LGFEHPSEVQQECIPQ------------------AILGMDVVCQA 88
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLA+LQQ+E D V V+V+CHTRELA+QI EY RFSKY+ NI+ VFF
Sbjct: 89 KSGMGKTAVFVLASLQQVEPVDGEVSVIVLCHTRELAYQIKNEYGRFSKYVPNIRTSVFF 148
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG+PI D+E LK P ++VGTPGRI ALVR+ L S +KHF+LDECDKMLEQL+M
Sbjct: 149 GGVPITTDQETLKNKEKCPHVIVGTPGRINALVRDGSLKGSAIKHFVLDECDKMLEQLDM 208
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIF+ +PH KQVMMFSATLSKE+RPVCKKFM P+E+YVDDE KLTLHGLQQHYV
Sbjct: 209 RRDVQEIFKVTPHHKQVMMFSATLSKEVRPVCKKFMQSPLEIYVDDETKLTLHGLQQHYV 268
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL E+ KN+KL +LLD L+FNQVVIFVKS R L LL E NFP++ IH M+QEER+
Sbjct: 269 KLSESAKNRKLNDLLDSLDFNQVVIFVKSTLRANELDKLLRECNFPSICIHSRMSQEERI 328
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+Y +FK F KGLA
Sbjct: 329 ARYTKFKQFETRILVATDIFGRGIDVERVNIVINYDTPTDADSYLHRVGRAGRFGTKGLA 388
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
ITF S + D ++L +Q RF+V+I ELP+ ++ STY+
Sbjct: 389 ITFVSQDEDDEVLKAIQSRFEVAIPELPETLEASTYM 425
>gi|357466255|ref|XP_003603412.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355492460|gb|AES73663.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 427
Score = 438 bits (1126), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 279/421 (66%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 80 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVSALVLCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK PQIVVGTPGRILAL R K
Sbjct: 125 ELAYQICHEFERFSTYLPDLKVAVFYGGVNIKVHKDLLKNECPQIVVGTPGRILALAREK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L+L ++HF+LDECDKMLE L+MR+DVQ+IF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 NLSLKNVRHFVLDECDKMLESLDMRKDVQDIFKLTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 305 DRLLIECNFPSICIHSGMSQEERLKRYRGFKEGHSRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D +LNNVQ RF++ I +LP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEIDIKQLPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|409051252|gb|EKM60728.1| hypothetical protein PHACADRAFT_246819 [Phanerochaete carnosa
HHB-10118-sp]
Length = 437
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 239/466 (51%), Positives = 293/466 (62%), Gaps = 94/466 (20%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEV-----------KGAYVSIHSSGFRDFLL 87
DN++L+DYEDE + +VA+GA A V K + IHS+GFRDFLL
Sbjct: 5 DNEELIDYEDEHD---VVANGAPAHAANAVTVSQPAADGVAEDKKNFSGIHSTGFRDFLL 61
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPE+LRAI D + E + V +P+ AV
Sbjct: 62 KPELLRAISD--------------LGFEHPSEVQQECIPQ------------------AV 89
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
LGMD+LCQAKSG GKTAVFVLATLQQLE + V VLVMCHTRELAFQI EY RF+KYM
Sbjct: 90 LGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVMCHTRELAFQIKNEYTRFAKYM 149
Query: 208 SNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++++ FFGG+ I KD+ L K+ P IVVGTPGR+ ALVR+K L+ S +KHF+LDEC
Sbjct: 150 PDVRISTFFGGIGIDKDKALLVDKSKCPHIVVGTPGRLNALVRDKSLDASKVKHFVLDEC 209
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DKMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLT
Sbjct: 210 DKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMQNPLEIFVDDETKLT 269
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGLQQHYVKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH
Sbjct: 270 LHGLQQHYVKLEEIGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIH 329
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G+ QEER+ +Y FK F
Sbjct: 330 SGLGQEERIARYTAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRA 389
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 390 GRFGTKGLAITFVSSESDQQVMAQIQSRFEVAVPELPDHIDPASYM 435
>gi|297807157|ref|XP_002871462.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
lyrata]
gi|297317299|gb|EFH47721.1| hypothetical protein ARALYDRAFT_487950 [Arabidopsis lyrata subsp.
lyrata]
Length = 427
Score = 437 bits (1125), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 280/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 79
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 80 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R+
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARD 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 303
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+++LN VQ+RF+V I ELP++ID ST
Sbjct: 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTST 423
Query: 444 YI 445
Y+
Sbjct: 424 YM 425
>gi|449528365|ref|XP_004171175.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
sativus]
Length = 427
Score = 437 bits (1124), Expect = e-120, Method: Compositional matrix adjust.
Identities = 230/421 (54%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 80 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K
Sbjct: 125 ELAYQICHEFERFSTYLPDLKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV R L
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 305 DKLLVECNFPSICIHSGMSQEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S D+ +LNNVQ+RF+V I ELP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|297811229|ref|XP_002873498.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
lyrata]
gi|297319335|gb|EFH49757.1| hypothetical protein ARALYDRAFT_909079 [Arabidopsis lyrata subsp.
lyrata]
Length = 427
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 279/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 79
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 80 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R+
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARD 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLNEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 303
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+ +LN VQ+RF+V I ELP++ID ST
Sbjct: 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSTVLNQVQERFEVDIKELPEQIDTST 423
Query: 444 YI 445
Y+
Sbjct: 424 YM 425
>gi|18416493|ref|NP_568245.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|186522075|ref|NP_568244.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|108861899|sp|Q9LFN6.2|RH56_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 56
gi|322510107|sp|Q56XG6.3|RH15_ARATH RecName: Full=DEAD-box ATP-dependent RNA helicase 15
gi|14190381|gb|AAK55671.1|AF378868_1 AT5g11200/F2I11_90 [Arabidopsis thaliana]
gi|15450405|gb|AAK96496.1| AT5g11170/F2I11_60 [Arabidopsis thaliana]
gi|16323360|gb|AAL15393.1| AT5g11200/F2I11_90 [Arabidopsis thaliana]
gi|24111365|gb|AAN46806.1| At5g11170/F2I11_60 [Arabidopsis thaliana]
gi|110740954|dbj|BAE98572.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
gi|332004259|gb|AED91642.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004262|gb|AED91645.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 427
Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust.
Identities = 228/422 (54%), Positives = 279/422 (66%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 79
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 80 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 303
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+++LN VQ+RF+V I ELP++ID ST
Sbjct: 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTST 423
Query: 444 YI 445
Y+
Sbjct: 424 YM 425
>gi|409083278|gb|EKM83635.1| hypothetical protein AGABI1DRAFT_110279 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426201670|gb|EKV51593.1| hypothetical protein AGABI2DRAFT_189825 [Agaricus bisporus var.
bisporus H97]
Length = 439
Score = 436 bits (1122), Expect = e-120, Method: Compositional matrix adjust.
Identities = 234/465 (50%), Positives = 289/465 (62%), Gaps = 90/465 (19%)
Query: 39 DNDDLLDYEDEEN---TEQIVADGAGDALAKQKEVKG-------AYVSIHSSGFRDFLLK 88
DNDDL+DYEDE + A G A A G + IHS+GF+DFLLK
Sbjct: 5 DNDDLIDYEDEHDLVPNSGATAAGTNGAPATGAVAGGDNDKDKKTFSGIHSTGFKDFLLK 64
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAI D + E + V +P+ AVL
Sbjct: 65 PELLRAISD--------------LGFEHPSEVQQECIPQ------------------AVL 92
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY RF+KYM
Sbjct: 93 GMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIKNEYTRFAKYMP 152
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
+++V F+GG P+ KD E L+ N P IVV TPGR+ AL R+K L+ +KHF+LDECD
Sbjct: 153 DVRVSTFYGGTPVAKDAEILRDKNKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECD 212
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTL
Sbjct: 213 KMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDETKLTL 272
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQHYVKL+E +KN+KL +LLD LEFNQVVIFVKSV RCI L LL NFP++SIH
Sbjct: 273 HGLQQHYVKLEEVQKNRKLNDLLDTLEFNQVVIFVKSVARCIELDKLLVSCNFPSISIHS 332
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G+TQEER+ +Y FK F
Sbjct: 333 GLTQEERINRYTAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDPDSYLHRVGRAG 392
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 393 RFGTKGLAITFVTSESDQQVMAAIQSRFEVAVPELPDHIDPASYM 437
>gi|392597062|gb|EIW86384.1| P-loop containing nucleoside triphosphate hydrolase protein
[Coniophora puteana RWD-64-598 SS2]
Length = 435
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/464 (50%), Positives = 290/464 (62%), Gaps = 92/464 (19%)
Query: 39 DNDDLLDYEDEEN---------TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKP 89
DN++L+DYEDE + + VA G D K K+ + IH++GFRDFLLKP
Sbjct: 5 DNEELIDYEDEHDVVPNGGVSASNGAVAGGVADGEEKDKK---NFSGIHATGFRDFLLKP 61
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAI D + E + V +P+ AVLG
Sbjct: 62 ELLRAISD--------------LGFEHPSEVQQECIPQ------------------AVLG 89
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM +
Sbjct: 90 MDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYSRFAKYMPD 149
Query: 210 IKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
++V F+GG P+ KD E L K+ P IVV TPGR+ ALVR+K L+ +KHF+LDECDK
Sbjct: 150 VRVSTFYGGTPVTKDAETLRDKSKCPHIVVATPGRLNALVRDKVLDAKNVKHFVLDECDK 209
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
MLEQL+MRRDVQEIFRS+PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTLH
Sbjct: 210 MLEQLDMRRDVQEIFRSTPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDETKLTLH 269
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQHYVKL E+ KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G
Sbjct: 270 GLQQHYVKLDESAKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSG 329
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
+ QEER+ +Y FK F
Sbjct: 330 LQQEERINRYSAFKAFEKRILVATDIFGRGIDVERVNIVINYDSPPDADSYLHRVGRAGR 389
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 390 FGTKGLAITFVSSESDQQVMAAIQSRFEVAVPELPDHIDPASYM 433
>gi|8953382|emb|CAB96655.1| DEAD BOX RNA helicase RH15 [Arabidopsis thaliana]
Length = 427
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/421 (54%), Positives = 278/421 (66%), Gaps = 78/421 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 79
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 80 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAE 303
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+++LN VQ+RF+V I ELP++ID ST
Sbjct: 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTST 423
Query: 444 Y 444
Y
Sbjct: 424 Y 424
>gi|449550559|gb|EMD41523.1| hypothetical protein CERSUDRAFT_110074 [Ceriporiopsis subvermispora
B]
Length = 440
Score = 436 bits (1121), Expect = e-119, Method: Compositional matrix adjust.
Identities = 240/469 (51%), Positives = 293/469 (62%), Gaps = 97/469 (20%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEV--------------KGAYVSIHSSGFRD 84
DN++L+DYEDE + +VA+GA A V K + IHS+GFRD
Sbjct: 5 DNEELIDYEDEHD---VVANGAPAPAATNGAVAAAAPAADGEADKDKKNFSGIHSTGFRD 61
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+LRAI D + E + V +P+
Sbjct: 62 FLLKPELLRAISD--------------LGFEHPSEVQQECIPQ----------------- 90
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
AVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLVMCHTRELAFQI EY RF+
Sbjct: 91 -AVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVMCHTRELAFQIKNEYSRFA 149
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM +++V F+GG P+ KD E L K+ P IVV TPGR+ ALVR+K L+ S +KHFIL
Sbjct: 150 KYMPDVRVSTFYGGTPVAKDAELLRDKSKCPHIVVATPGRLNALVRDKVLDASKVKHFIL 209
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE
Sbjct: 210 DECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDET 269
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQHYVKL+E +KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++
Sbjct: 270 KLTLHGLQQHYVKLEEVQKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSI 329
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
SIH G+ QEER+ +Y FK F
Sbjct: 330 SIHSGLAQEERINRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADSYLHRV 389
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E D ++++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 390 GRAGRFGTKGLAITFVSSETDQQVMSAIQSRFEVAVPELPDHIDPASYM 438
>gi|294954356|ref|XP_002788127.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239903342|gb|EER19923.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 485
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/458 (49%), Positives = 298/458 (65%), Gaps = 84/458 (18%)
Query: 39 DNDDLLDY----EDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
+ D LLDY E+ E+T + G +A + KG YV IH++GFRDFLLKPE+LRA
Sbjct: 5 EEDQLLDYDEGDEEVEDTSAVNGKAVGGEIAADGQKKGNYVGIHATGFRDFLLKPELLRA 64
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
IVDC E + V + +P+ A+LG DILC
Sbjct: 65 IVDCG--------------FEHPSEVQHEAIPQ------------------AILGTDILC 92
Query: 155 QAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
QAKSGMGKTAVFVLA LQQL + D++V VL+MCHTRELA+QI E++RFSKY N+K
Sbjct: 93 QAKSGMGKTAVFVLAILQQLNIDEKDTDVKVLIMCHTRELAYQIKNEFDRFSKYFPNVKN 152
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
GV +GG+PI +D+E L +PQI++GTPGR+LALVR K L+LS ++HF+LDECDK L++L
Sbjct: 153 GVVYGGVPISEDKEMLSKSHPQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKL 212
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MR+D+Q +F +P KQVMMFSAT+SKE+R VCK+FM++P E++VDD+ KLTLHGLQQ+
Sbjct: 213 DMRKDIQSVFMETPVKKQVMMFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQY 272
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
+V+L ENEKNKKL +LLD LEFNQVVIFVKSV R +AL+ LL+E NFPA++IH + Q E
Sbjct: 273 FVRLAENEKNKKLTDLLDALEFNQVVIFVKSVQRAMALADLLTECNFPAIAIHSRLKQSE 332
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+ +Y++FKDF KG
Sbjct: 333 RIDRYKQFKDFKKRIMVATDLFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKG 392
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
LAITF S E D +LN VQ RF+V+I ELP +ID+++Y
Sbjct: 393 LAITFVSSEEDTDMLNQVQARFEVTIGELPAQIDVTSY 430
>gi|356519355|ref|XP_003528338.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 426
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/421 (54%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 78
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 79 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTR 123
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IVVGTPGRILAL R+K
Sbjct: 124 ELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDK 183
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 184 DLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFM 243
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KL+E EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 244 QDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 303
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKD---------------------------- 402
+ LL E NFP++ IH M+QEERLK+Y+ FK+
Sbjct: 304 NKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYD 363
Query: 403 --------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
H KGLAITF S D+++LN VQ RF+V I ELP++ID STY
Sbjct: 364 MPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTY 423
Query: 445 I 445
+
Sbjct: 424 M 424
>gi|170085389|ref|XP_001873918.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164651470|gb|EDR15710.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 434
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 235/460 (51%), Positives = 287/460 (62%), Gaps = 85/460 (18%)
Query: 39 DNDDLLDYEDEENT-----EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
DN+DL+DYEDE +GA A+ + K + IHS+GFRDFLLKPE+LR
Sbjct: 5 DNEDLIDYEDEHEVIPGGIAASATNGAPSAVDGDDKDKKNFSGIHSTGFRDFLLKPELLR 64
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D + E + V +P+ AVLGMD+L
Sbjct: 65 AISD--------------LGFEHPSEVQQECIPQ------------------AVLGMDVL 92
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM +++V
Sbjct: 93 CQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRVS 152
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
F+GG P+ KD E L KT P IVV TPGR+ AL R+K L+ +KHF+LDECDKMLEQ
Sbjct: 153 TFYGGTPVTKDAEILRDKTKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQ 212
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR++PH KQVMMFSATL+K+IR CKKFM +P+E++VDDE KLTLHGLQQ
Sbjct: 213 LDMRRDVQEIFRTTPHHKQVMMFSATLAKDIRITCKKFMANPLEIFVDDETKLTLHGLQQ 272
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
HYVKL+E KNKKL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G+ QE
Sbjct: 273 HYVKLEEVSKNKKLSELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGLQQE 332
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+K+Y FK F K
Sbjct: 333 ERIKRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADSYLHRVGRAGRFGTK 392
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAITF S ++D ++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 393 GLAITFVSSDSDQHVMGAIQSRFEVAVPELPDHIDPASYM 432
>gi|356526203|ref|XP_003531708.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Glycine
max]
Length = 426
Score = 436 bits (1120), Expect = e-119, Method: Compositional matrix adjust.
Identities = 230/421 (54%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 78
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 79 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTR 123
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IVVGTPGRILAL R+K
Sbjct: 124 ELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDK 183
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM
Sbjct: 184 DLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKFM 243
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KL+E EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 244 QDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 303
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKD---------------------------- 402
+ LL E NFP++ IH M+QEERLK+Y+ FK+
Sbjct: 304 NKLLVECNFPSICIHSAMSQEERLKRYKGFKEGKQRILVATDLVGRGIDIERVNIVINYD 363
Query: 403 --------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
H KGLAITF S D+++LN VQ RF+V I ELP++ID STY
Sbjct: 364 MPDSADTYLHRVGRAGRFGTKGLAITFVSSTADSEVLNQVQSRFEVDIKELPEQIDTSTY 423
Query: 445 I 445
+
Sbjct: 424 M 424
>gi|336387322|gb|EGO28467.1| hypothetical protein SERLADRAFT_458898 [Serpula lacrymans var.
lacrymans S7.9]
Length = 437
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 237/463 (51%), Positives = 290/463 (62%), Gaps = 88/463 (19%)
Query: 39 DNDDLLDYEDEEN---TEQIVADGAGDALAKQKEVKG-----AYVSIHSSGFRDFLLKPE 90
DN+DL+DYEDE + V G ALA + +G + IHS+GFRDFLLKPE
Sbjct: 5 DNEDLIDYEDENDLPTNGAAVPSSNGAALATAVDGEGDKEKKNFSGIHSTGFRDFLLKPE 64
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI D + E + V +P+ AVLGM
Sbjct: 65 LLRAISD--------------LGFEHPSEVQQECIPQ------------------AVLGM 92
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM ++
Sbjct: 93 DVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDV 152
Query: 211 KVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+V F+GG P+ KD E L KT P IVV TPGR+ AL R+K L+ +KHF+LDECDKM
Sbjct: 153 RVSTFYGGTPVAKDSEILRDKTKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKM 212
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTLHG
Sbjct: 213 LEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDETKLTLHG 272
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQHYVKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G+
Sbjct: 273 LQQHYVKLEETGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSGL 332
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
QEER+K+Y FK F
Sbjct: 333 QQEERIKRYTAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGRF 392
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAIT S E+D +++ +Q RF+V++SELP+ ID ++Y+
Sbjct: 393 GTKGLAITCVSSESDQQVMAAIQSRFEVAVSELPEHIDPASYM 435
>gi|328773520|gb|EGF83557.1| hypothetical protein BATDEDRAFT_15696 [Batrachochytrium
dendrobatidis JAM81]
Length = 443
Score = 435 bits (1118), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/468 (49%), Positives = 300/468 (64%), Gaps = 95/468 (20%)
Query: 41 DDLLDY--EDEENTE---------QIVADGAGDALAKQKEVK-GAYVSIHSSGFRDFLLK 88
D+LLDY EDE+ TE I A G A A KE K G+YV IH++GFRDFLLK
Sbjct: 6 DELLDYADEDEDQTEVLTSHAGVPNISAVGGLAAPADDKETKKGSYVGIHATGFRDFLLK 65
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAI DC F ++++ I +A+L
Sbjct: 66 PELLRAIGDCG--------FEHPSEVQQECI------------------------PQAIL 93
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERF 203
GMD+LCQAKSGMGKTAVFVLATLQQL+T+ S+ V+V+CHTRELA+QI EY RF
Sbjct: 94 GMDVLCQAKSGMGKTAVFVLATLQQLDTSAAAGAPSDPSVIVICHTRELAYQIKNEYARF 153
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
SKY+ ++K V +GG I+++ + LK PQI+V TPGR+LAL+R+K +NL+ +KHF+LD
Sbjct: 154 SKYLPDVKTAVLYGGTSIRQNIDTLKNDKPQIIVATPGRLLALIRDKAINLATVKHFVLD 213
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDK+L+ L+MR+DVQ+IFRS+PH KQVMM+SATLSKEIRPVCKKFM +P+E++VDD+ K
Sbjct: 214 ECDKILDALDMRKDVQDIFRSTPHHKQVMMYSATLSKEIRPVCKKFMQNPLEIFVDDQTK 273
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL EN K +KL +LLD LEFNQV IFVKSV R + L LL + FP++
Sbjct: 274 LTLHGLQQYYLKLSENAKTRKLNDLLDSLEFNQVCIFVKSVQRAVELDRLLVKCGFPSIC 333
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
IH + QEER+ +Y+ FKDF
Sbjct: 334 IHSQLQQEERIARYKSFKDFEKRIMVATDIFGRGIDVERVNIVINYDMSDSPDAYLHRVG 393
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + D ++LN VQ RF+V+I+ELP+ ID+STY+
Sbjct: 394 RAGRFGTKGLAITFVSSDEDTEVLNQVQGRFEVNITELPETIDVSTYM 441
>gi|367021668|ref|XP_003660119.1| hypothetical protein MYCTH_2298018 [Myceliophthora thermophila ATCC
42464]
gi|347007386|gb|AEO54874.1| hypothetical protein MYCTH_2298018 [Myceliophthora thermophila ATCC
42464]
Length = 434
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/465 (49%), Positives = 297/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGA----GDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E + A + GDA A + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSGEEDLIDYSDDELNNETAAPTSNGKKGDAAAATQNVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKDEE LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDEEILKNKETH-PHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+YV L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYVALQEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 ISQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 388 FGTKGLAISFVSSDQDKEVLQQIEKRFEVALPEFPKEGIDASTYM 432
>gi|296082026|emb|CBI21031.3| unnamed protein product [Vitis vinifera]
Length = 521
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 238/460 (51%), Positives = 291/460 (63%), Gaps = 86/460 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCW-------------------RILVATNLFG-- 109
K YV IHSSGFRDFLLKPE+LRAIVD +L LFG
Sbjct: 38 KKGYVGIHSSGFRDFLLKPELLRAIVDSGFEHPSEVDSSYLLHFFPTIVLLSFILLFGFL 97
Query: 110 ----RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG-----------TKAVLGMDILC 154
+ + +V+++ + + Y H + FG +A+LGMD++C
Sbjct: 98 FCGFLSLGLLKVSVLSKNCLGHEVIHYYHTL----DFGEVKWFMQHECIPQAILGMDVIC 153
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFVL+TLQQ+E V LV+CHTRELA+QI E+ERFS Y+ +IKV V
Sbjct: 154 QAKSGMGKTAVFVLSTLQQIEPVTGQVAALVLCHTRELAYQICHEFERFSTYLPDIKVAV 213
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
F+GG+ I+ ++ LK P IVVGTPGRILAL R+K L L ++HFILDECDKMLE L+M
Sbjct: 214 FYGGVNIKIHKDLLKNECPHIVVGTPGRILALARDKDLALKNVRHFILDECDKMLESLDM 273
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+
Sbjct: 274 RRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYI 333
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GM QEERL
Sbjct: 334 KLSELEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMPQEERL 393
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
+Y+ FK+ H KGLA
Sbjct: 394 TRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLA 453
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
ITF S +D+ +LN VQ+RF+V I ELP++ID STY E +
Sbjct: 454 ITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYREKK 493
>gi|407920611|gb|EKG13800.1| Helicase [Macrophomina phaseolina MS6]
Length = 436
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 236/466 (50%), Positives = 297/466 (63%), Gaps = 89/466 (19%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGA---GDA----LAKQKEVKGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE + VA GA GD LA E KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEELGQNETVATGAAANGDQKKGDLAVTGEKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
E++RAI DC E + V +P+ A++
Sbjct: 61 QELIRAITDCG--------------FEHPSEVQQNCIPQ------------------AII 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DILCQAKSG+GKTAVFVLATLQQLE VLV+CHTRELA+QI EY RFSKY+
Sbjct: 89 GSDILCQAKSGLGKTAVFVLATLQQLEPIAGETAVLVLCHTRELAYQIKNEYARFSKYLP 148
Query: 209 NIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++K VF+GG P+QKD E L K +P I+VGTPGR+ ALVR KKL L +K F+LDECD
Sbjct: 149 DVKTSVFYGGTPMQKDIEILSNKDTHPHIIVGTPGRLNALVREKKLRLGGIKMFVLDECD 208
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KML+Q++MRRDVQEIFR++P TKQVMMFSATLSKE RP+CKKFM +P+E+YVDDE KLTL
Sbjct: 209 KMLDQIDMRRDVQEIFRATPTTKQVMMFSATLSKETRPICKKFMRNPLEIYVDDETKLTL 268
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L LL E NFP++++H
Sbjct: 269 HGLQQYYIKLSEAEKNRKLNDLLDNLEFNQVIIFVKSTLRATELDRLLRECNFPSIAVHS 328
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G++QEER+K+Y+EFK+F+
Sbjct: 329 GVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAG 388
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D ++L +V+ RF+V + E P+ ID STY+
Sbjct: 389 RFGTKGLSISFVSSEQDEQVLKDVEKRFEVPLPEFPEGGIDSSTYM 434
>gi|294882024|ref|XP_002769569.1| helicase, putative [Perkinsus marinus ATCC 50983]
gi|239873121|gb|EER02287.1| helicase, putative [Perkinsus marinus ATCC 50983]
Length = 439
Score = 434 bits (1116), Expect = e-119, Method: Compositional matrix adjust.
Identities = 228/458 (49%), Positives = 298/458 (65%), Gaps = 84/458 (18%)
Query: 39 DNDDLLDY----EDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
+ D LLDY E+ E+T + G +A + KG YV IH++GFRDFLLKPE+LRA
Sbjct: 5 EEDQLLDYDEGDEEVEDTSAMNGKTVGGEIAADGQKKGNYVGIHATGFRDFLLKPELLRA 64
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
IVDC E + V + +P+ A+LG DILC
Sbjct: 65 IVDCG--------------FEHPSEVQHEAIPQ------------------AILGTDILC 92
Query: 155 QAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
QAKSGMGKTAVFVLA LQQL + DS+V VL+MCHTRELA+QI E++RFSKY N+K
Sbjct: 93 QAKSGMGKTAVFVLAILQQLNVDEKDSDVKVLIMCHTRELAYQIKNEFDRFSKYFPNVKN 152
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
GV +GG+PI +D+E L +PQI++GTPGR+LALVR K L+LS ++HF+LDECDK L++L
Sbjct: 153 GVVYGGVPISEDKEMLSKSHPQILIGTPGRVLALVRGKHLDLSHVEHFVLDECDKCLDKL 212
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MR+D+Q +F +P KQVMMFSAT+SKE+R VCK+FM++P E++VDD+ KLTLHGLQQ+
Sbjct: 213 DMRKDIQSVFIETPVKKQVMMFSATMSKEMREVCKRFMNEPHEIFVDDDTKLTLHGLQQY 272
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
+V+L ENEKNKKL +LLD LEFNQVVIFVKSV R IAL+ LL+E NFPA++IH + Q +
Sbjct: 273 FVRLAENEKNKKLTDLLDALEFNQVVIFVKSVQRAIALADLLTECNFPAIAIHSRLKQSD 332
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+ +Y++FKDF KG
Sbjct: 333 RIDRYKQFKDFKKRIMVATDLFGRGIDIERVNIVINYDIPDSSDQYLHRVGRAGRFGTKG 392
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
LAITF S E D +LN VQ RF+V++ ELP +ID+++Y
Sbjct: 393 LAITFVSSEEDTDMLNQVQARFEVTVGELPAQIDVTSY 430
>gi|296413310|ref|XP_002836357.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295630174|emb|CAZ80548.1| unnamed protein product [Tuber melanosporum]
Length = 443
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 229/475 (48%), Positives = 301/475 (63%), Gaps = 100/475 (21%)
Query: 37 MADNDDLLDYEDEEN------TEQIVADGAGDALAKQKEV-----------KGAYVSIHS 79
M+ +DL+DY D+E T + A+G +A AK+ +V KG+YV IHS
Sbjct: 1 MSGEEDLIDYSDDEGLDATKETPSVAANG--EAAAKKADVTAAAGGPAADKKGSYVGIHS 58
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
+GFRDFLLKPE+LRAIVDC F ++++V I
Sbjct: 59 TGFRDFLLKPELLRAIVDCG--------FEHPSEVQQVCI-------------------- 90
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+++LG D+LCQAKSG+GKTAVFVL TLQQ++ VLVMCHTRELA+QI E
Sbjct: 91 ----PQSILGTDVLCQAKSGLGKTAVFVLTTLQQVDPVPGEASVLVMCHTRELAYQIKNE 146
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKT--HNPQIVVGTPGRILALVRNKKLNLSLL 257
Y RFSKYM ++ VF+GG P+Q D + LK +P I+V TPGR+ ALVR+K L L +
Sbjct: 147 YARFSKYMPEVRTAVFYGGTPMQNDVQVLKNKDQHPHIIVATPGRLNALVRDKHLRLGSV 206
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K F+LDECDKMLEQ++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM P+E+Y
Sbjct: 207 KVFVLDECDKMLEQIDMRRDVQEIFRATPQQKQVMMFSATLSQEIRPICKKFMQSPLEIY 266
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE KLTLHGLQQ+YVKL+E EKN+KL ELLD LEFNQV+IFVKS R LS LL+E
Sbjct: 267 VDDETKLTLHGLQQYYVKLEEKEKNRKLNELLDQLEFNQVIIFVKSTIRATELSRLLNEC 326
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP++++H G+ QEER+ +Y++FK+F+
Sbjct: 327 NFPSIAVHSGIAQEERIARYKQFKEFNKRICVATDVFGRGIDIERINLAINYDLPADPDS 386
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S + DA++L+ + +RF+VS+ E P+ ID S+Y+
Sbjct: 387 YLHRVGRAGRFGTKGLSISFVSSKEDAEVLDKIMERFEVSLDEFPESGIDSSSYM 441
>gi|8953379|emb|CAB96652.1| DEAD BOX RNA helicase RH15-like protein [Arabidopsis thaliana]
Length = 435
Score = 434 bits (1115), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/421 (53%), Positives = 277/421 (65%), Gaps = 78/421 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 79
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 80 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EK +KL +LLD L+FNQVVIFVKSV+R
Sbjct: 244 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKTRKLNDLLDALDFNQVVIFVKSVSRAAE 303
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 304 LNKLLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 363
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+++LN VQ+RF+V I ELP++ID ST
Sbjct: 364 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTST 423
Query: 444 Y 444
Y
Sbjct: 424 Y 424
>gi|388507678|gb|AFK41905.1| unknown [Medicago truncatula]
Length = 427
Score = 433 bits (1114), Expect = e-119, Method: Compositional matrix adjust.
Identities = 227/421 (53%), Positives = 278/421 (66%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTR
Sbjct: 80 ---------------AILGMDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+E FS Y++++KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K
Sbjct: 125 ELAYQICHEFEGFSTYLADLKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L+L ++HFILDECDKMLE L+MR+DVQ+IF+ +P KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 DLSLKNVRHFILDECDKMLESLDMRKDVQDIFKMTPRDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KLKE EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 245 QDPMEIYVDDEAKLTLHGLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
LL E NFP++ IH GM+QEERLK+Y+ FK+ H
Sbjct: 305 DKLLVECNFPSICIHSGMSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D +LNNVQ RF+V I +LP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|219130818|ref|XP_002185552.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217402960|gb|EEC42917.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 428
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 232/446 (52%), Positives = 284/446 (63%), Gaps = 80/446 (17%)
Query: 48 DEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNL 107
+EE ++ D A ++ KG YV IH+SGF+DFLLKPE+LRAIVD
Sbjct: 13 EEEVVPEVAKDAAAVGGDGKESKKGHYVGIHASGFKDFLLKPELLRAIVDAG-------- 64
Query: 108 FGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFV 167
E + V + +P+ AVLG DI+CQAKSGMGKTAVFV
Sbjct: 65 ------FEHPSEVQHESIPQ------------------AVLGGDIVCQAKSGMGKTAVFV 100
Query: 168 LATLQQLETT--DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225
LATL QL + +V VLV+CHTRELAFQI+ EYERFSKY+ +IK VF+GG+ + ++
Sbjct: 101 LATLHQLNPSAESEDVQVLVLCHTRELAFQIAHEYERFSKYLPSIKTAVFYGGVNVTQNR 160
Query: 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285
+ LK +P IVVGTPGRIL L R+K L LS LKHF+LDECD++LE L+MRRDVQEIFR +
Sbjct: 161 DILKKEHPHIVVGTPGRILKLARDKDLKLSSLKHFVLDECDRVLESLDMRRDVQEIFRMT 220
Query: 286 PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKL 345
PH KQV++FSATLSKEIRPVCKKF DPME+YVDDE KLTLHGLQ +Y KL E EKNKKL
Sbjct: 221 PHEKQVLLFSATLSKEIRPVCKKFCQDPMEIYVDDETKLTLHGLQLYYAKLAEAEKNKKL 280
Query: 346 FELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH- 404
+LLD LEFNQVVIFV V R L+ LL+E NFP++ IH GM QEER+ KY+ FKDF+
Sbjct: 281 NDLLDALEFNQVVIFVSKVARAKELNRLLTECNFPSICIHAGMRQEERISKYKSFKDFNA 340
Query: 405 ---------------------------------------------KGLAITFASDENDAK 419
KG+AI+F S E D
Sbjct: 341 RILVATDLFGRGIDIERVNVVINYDFPDDSDQFLHRVGRAGRFGTKGIAISFISSEADQT 400
Query: 420 ILNNVQDRFDVSISELPDEIDLSTYI 445
IL+ +Q RF+V+I LPDEID+STY+
Sbjct: 401 ILSQIQSRFEVNIPTLPDEIDMSTYM 426
>gi|224013446|ref|XP_002296387.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
gi|220968739|gb|EED87083.1| dead box family RNA helicase [Thalassiosira pseudonana CCMP1335]
Length = 433
Score = 433 bits (1113), Expect = e-119, Method: Compositional matrix adjust.
Identities = 234/460 (50%), Positives = 292/460 (63%), Gaps = 84/460 (18%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
++ DL+DY++EE E +VA+ D +K+ + KG YV IH+SGF+DF+LKPE LRA+VDC
Sbjct: 7 EDHDLVDYDEEEEEENVVAEKTADGDSKEVK-KGHYVGIHASGFKDFILKPECLRAVVDC 65
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
F +++ I +AVLGMDI+CQAKS
Sbjct: 66 G--------FEHPSEVQHECI------------------------PQAVLGMDIVCQAKS 93
Query: 159 GMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
GMGKTAVFVLATL QL ++ V VLV+CHTRELAFQI+ EYERFSKY+ +K
Sbjct: 94 GMGKTAVFVLATLHQLNPNAFPAGENQVSVLVLCHTRELAFQIAHEYERFSKYLPEVKTA 153
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VF+GG+ I+ + + LK P IVVGTPGR+L L R K L L +KHF+LDECD++LE L+
Sbjct: 154 VFYGGVSIKTNRDVLKNDCPHIVVGTPGRVLGLAREKTLKLDHIKHFVLDECDRILESLD 213
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRD+QEIFR +PH KQVMMFSATLSKEIRPVCKKF DPME+YVDD+ KLTLHGLQ +Y
Sbjct: 214 MRRDIQEIFRMTPHEKQVMMFSATLSKEIRPVCKKFCQDPMEIYVDDDTKLTLHGLQLYY 273
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKL E EKN+KL +LLD LEFNQVVIFV V R L+ LL+E NFP++ IH G Q+ER
Sbjct: 274 VKLAEAEKNRKLNDLLDALEFNQVVIFVSKVARANELNRLLTECNFPSICIHAGQKQDER 333
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+ KY+ FK+F+ KGL
Sbjct: 334 IAKYKSFKEFNARILVSTDLFGRGIDIERVNVVINYDFPDDSDQFLHRVGRAGRFGTKGL 393
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
AI+F S E D +IL+ VQ RF+V+I ELPDEID S Y+
Sbjct: 394 AISFISSEPDQEILDKVQSRFEVNIPELPDEIDASAYMSA 433
>gi|440636017|gb|ELR05936.1| ATP-dependent RNA helicase sub2 [Geomyces destructans 20631-21]
Length = 439
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 298/469 (63%), Gaps = 92/469 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVAD--GAGDALAKQKEV---------KGAYVSIHSSGFRDF 85
M+ +DL+DY D+E + A GAG+ AK+ ++ KG+YV IH++GFRDF
Sbjct: 1 MSTEEDLIDYSDDELETKTTAPAAGAGNGEAKEGDLTVSGGNPDKKGSYVGIHATGFRDF 60
Query: 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
LLKPE+LRAI DC F ++++V I +
Sbjct: 61 LLKPELLRAITDCG--------FEHPSEVQQVCI------------------------PQ 88
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELA+QI EY RFSK
Sbjct: 89 AILGTDVLCQAKSGLGKTAVFVLTTLQQVEPVSGECSVLVMCHTRELAYQIKNEYARFSK 148
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM +K VF+GG PIQKD E LK + P I+V TPGR+ ALVR+K L L +K F+LD
Sbjct: 149 YMPEVKTAVFYGGTPIQKDAEILKNKDTHPHIIVATPGRLNALVRDKHLRLGSVKVFVLD 208
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+E+YVDD+ K
Sbjct: 209 ECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSQEVRPICKKFMQNPLEIYVDDDTK 268
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL E EKN+KL ELLD ++FNQV+IFVKS R L LL E NFP+++
Sbjct: 269 LTLHGLQQYYIKLDEKEKNRKLNELLDDMQFNQVIIFVKSTLRATELDKLLRECNFPSIA 328
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y EFK+F+
Sbjct: 329 VHSGVSQEERIKRYTEFKEFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVG 388
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KG++I+F S E D ++L +++ RF+V++ E P+ ID STY+
Sbjct: 389 RAGRFGSKGVSISFVSSEPDQQVLKDIEKRFEVALPEFPEGGIDASTYM 437
>gi|392571877|gb|EIW65049.1| P-loop containing nucleoside triphosphate hydrolase protein
[Trametes versicolor FP-101664 SS1]
Length = 440
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 236/472 (50%), Positives = 291/472 (61%), Gaps = 103/472 (21%)
Query: 39 DNDDLLDYEDEEN-----------------TEQIVADGAGDALAKQKEVKGAYVSIHSSG 81
DN++L+DYEDE + + ADG G+ K + IHS+G
Sbjct: 5 DNEELIDYEDEHDVVTNGAAATTATNGAVTSTAPAADGEGEKDKKN------FSGIHSTG 58
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLKPE+LRAI D + E + V +P+
Sbjct: 59 FRDFLLKPELLRAISD--------------LGFEHPSEVQQECIPQ-------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
AVLGMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY
Sbjct: 91 ----AVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIKNEYA 146
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
RF+KYM +++VG F+GG P+ KD E L KT P IVV TPGR+ ALVR+K L+ S +KH
Sbjct: 147 RFAKYMPDVRVGTFYGGTPVAKDAELLRDKTKCPHIVVATPGRLNALVRDKVLDASKVKH 206
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
FILDECDKMLEQL+MRRDVQEIFR++PH KQVMMFSATL+K+IR CKKFM +P+E++VD
Sbjct: 207 FILDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKDIRITCKKFMANPLEIFVD 266
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
DE KLTLHGLQQHYVKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NF
Sbjct: 267 DETKLTLHGLQQHYVKLEEVGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNF 326
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
P+++IH G+ QEER+ +Y FK F
Sbjct: 327 PSIAIHSGLAQEERIARYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDSPPDADSYL 386
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 387 HRVGRAGRFGTKGLAITFVSSESDQQVMAAIQSRFEVAVPELPDHIDPASYM 438
>gi|171684483|ref|XP_001907183.1| hypothetical protein [Podospora anserina S mat+]
gi|170942202|emb|CAP67854.1| unnamed protein product [Podospora anserina S mat+]
Length = 433
Score = 432 bits (1112), Expect = e-118, Method: Compositional matrix adjust.
Identities = 228/463 (49%), Positives = 295/463 (63%), Gaps = 86/463 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGA----GDALAKQK-EVKGAYVSIHSSGFRDFLLKPEI 91
M+ +DL+DY D+E ++ A + DA A Q + KG+YV IHS+GFRDFLLKPE+
Sbjct: 1 MSAEEDLIDYSDDELNQETTAPASNGKKADAAAAQNVDKKGSYVGIHSTGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI DC F ++++ I +A+LG D
Sbjct: 61 LRAIADCG--------FEHPSEVQQTTI------------------------PQAMLGGD 88
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
I+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +IK
Sbjct: 89 IICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDIK 148
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
GVF+GG PIQKD E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML
Sbjct: 149 TGVFYGGTPIQKDAEILKNKDTHPHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDKML 208
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLHGL
Sbjct: 209 DQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGL 268
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++
Sbjct: 269 QQYYLALEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVS 328
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+K+Y+EFK+F+
Sbjct: 329 QEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFG 388
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + E D ++L ++ RF+V++ E P E ID STY+
Sbjct: 389 TKGLAISFVTTEQDKEVLQAIEKRFEVALPEFPKEGIDASTYM 431
>gi|321250096|ref|XP_003191688.1| ATP dependent RNA helicase [Cryptococcus gattii WM276]
gi|317458155|gb|ADV19901.1| ATP dependent RNA helicase, putative [Cryptococcus gattii WM276]
Length = 442
Score = 432 bits (1111), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/466 (49%), Positives = 296/466 (63%), Gaps = 91/466 (19%)
Query: 35 SKMA--DNDDLLDYEDEENTEQIV-----ADGAGDALAKQKEVKGAYVSIHSSGFRDFLL 87
+KM+ D ++L+DY+ E E+I+ A+ GD K KG+YV IHS+GFRDFLL
Sbjct: 11 TKMSRPDEEELVDYD--EAAEEILPPAPAAETNGDKADGDK--KGSYVGIHSTGFRDFLL 66
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPE+LRAI D + E + V +P+ A+
Sbjct: 67 KPELLRAISD--------------LGFEHPSEVQQECIPQ------------------AI 94
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
LG D+LCQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRELA+QI E+ RFSK+M
Sbjct: 95 LGTDVLCQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFM 154
Query: 208 SNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+N++ GVF+GG PI D+E L K P IVVGTPGR +ALVR+KKLN S +KHF+LDEC
Sbjct: 155 TNVRTGVFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDEC 214
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DKMLEQL+MRRDVQEIFR++PH KQVMMFSATLSK+IR CKKFM P+E+YVDDE KLT
Sbjct: 215 DKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLT 274
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGLQQ Y+KL+E EKN+KL +LLD LEFNQV IFVKSV R L LL E NFP++ IH
Sbjct: 275 LHGLQQFYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIH 334
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G+ Q ER+ ++Q+FK F
Sbjct: 335 SGLQQAERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPADADSYLHRVGRA 394
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI+F S++ D ++L +Q+RF V+I LP+ +D +TY+
Sbjct: 395 GRFGTKGLAISFVSNDADQEVLQKIQERFTVAIPTLPETVDPATYM 440
>gi|303289024|ref|XP_003063800.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226454868|gb|EEH52173.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 425
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 222/422 (52%), Positives = 275/422 (65%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHS+GF+DFLLKPE+LRAIVDC E + V + +P+
Sbjct: 34 VKKGYVGIHSTGFKDFLLKPELLRAIVDCG--------------FEHPSEVQHECIPQ-- 77
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVLA LQQLE + L++CHT
Sbjct: 78 ----------------AILGMDVICQAKSGMGKTAVFVLAVLQQLEPVPGEIGALILCHT 121
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ N+ V V FGG+ I++ +E L+ P +VV TPGR+ AL ++
Sbjct: 122 RELAYQIMHEFERFSVYLPNVNVSVVFGGVNIKQQKEELEAKPPSVVVATPGRLKALAKD 181
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
L+L HFILDECDKMLEQL+MR DVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 182 GSLSLKQCGHFILDECDKMLEQLDMRSDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 241
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M+DPME+YVDDE KLTLHGL QHY+KL+E EKN+KL +LLD L FNQVVIFVKSV RC
Sbjct: 242 MNDPMEIYVDDETKLTLHGLVQHYIKLQEGEKNRKLNDLLDALMFNQVVIFVKSVQRCTY 301
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L LL+E NFP+++IHRGM+QEERL +Y+ FK+ H
Sbjct: 302 LDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGHKRILVATDLVARGIDIERVNIVINY 361
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + + D+ +LN V +RF+V I ELP++ID ST
Sbjct: 362 DMPDGADTYLHRVGRAGRFGTKGLAITFIASDEDSGVLNQVHERFEVEIKELPEQIDTST 421
Query: 444 YI 445
Y+
Sbjct: 422 YM 423
>gi|405118096|gb|AFR92871.1| ATP-dependent RNA helicase sub2 [Cryptococcus neoformans var.
grubii H99]
Length = 430
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/460 (50%), Positives = 291/460 (63%), Gaps = 89/460 (19%)
Query: 39 DNDDLLDYEDEENTEQIV-----ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
D ++L+DY+ E E+I+ A+ GD K KG+YV IHS+GFRDFLLKPE+LR
Sbjct: 5 DEEELVDYD--EAAEEILPPAPAAETNGDKADGDK--KGSYVGIHSTGFRDFLLKPELLR 60
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D + E + V +P+ A+LG D+L
Sbjct: 61 AISD--------------LGFEHPSEVQQECIPQ------------------AILGTDVL 88
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRELA+QI E+ RFSK+M+N++ G
Sbjct: 89 CQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTG 148
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VF+GG PI D+E L K P IVVGTPGR +ALVR+KKLN S +KHF+LDECDKMLEQ
Sbjct: 149 VFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQ 208
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR++PH KQVMMFSATLSK+IR CKKFM P+E+YVDDE KLTLHGLQQ
Sbjct: 209 LDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQ 268
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
Y+KL+E EKN+KL +LLD LEFNQV IFVKSV R L LL E NFP++ IH G+ Q
Sbjct: 269 FYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQA 328
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+ ++Q+FK F K
Sbjct: 329 ERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTK 388
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAI+F S + D ++L +Q+RF V+I LP+ +D +TY+
Sbjct: 389 GLAISFVSSDADQEVLQKIQERFTVAIPTLPETVDPATYM 428
>gi|58259249|ref|XP_567037.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|134107387|ref|XP_777578.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819535|sp|P0CQ97.1|SUB2_CRYNB RecName: Full=ATP-dependent RNA helicase SUB2
gi|338819536|sp|P0CQ96.1|SUB2_CRYNJ RecName: Full=ATP-dependent RNA helicase SUB2
gi|50260272|gb|EAL22931.1| hypothetical protein CNBA7000 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223174|gb|AAW41218.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 442
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/460 (50%), Positives = 291/460 (63%), Gaps = 89/460 (19%)
Query: 39 DNDDLLDYEDEENTEQIV-----ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
D ++L+DY+ E E+I+ A+ GD K KG+YV IHS+GFRDFLLKPE+LR
Sbjct: 17 DEEELVDYD--EAAEEILPPAPAAETNGDKADGDK--KGSYVGIHSTGFRDFLLKPELLR 72
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D + E + V +P+ A+LG D+L
Sbjct: 73 AISD--------------LGFEHPSEVQQECIPQ------------------AILGTDVL 100
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRELA+QI E+ RFSK+M+N++ G
Sbjct: 101 CQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTG 160
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VF+GG PI D+E L K P IVVGTPGR +ALVR+KKLN S +KHF+LDECDKMLEQ
Sbjct: 161 VFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQ 220
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR++PH KQVMMFSATLSK+IR CKKFM P+E+YVDDE KLTLHGLQQ
Sbjct: 221 LDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQ 280
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
Y+KL+E EKN+KL +LLD LEFNQV IFVKSV R L LL E NFP++ IH G+ Q
Sbjct: 281 FYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQA 340
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+ ++Q+FK F K
Sbjct: 341 ERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTK 400
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAI+F S + D ++L +Q+RF V+I LP+ +D +TY+
Sbjct: 401 GLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYM 440
>gi|58259251|ref|XP_567038.1| ATP dependent RNA helicase [Cryptococcus neoformans var. neoformans
JEC21]
gi|57223175|gb|AAW41219.1| ATP dependent RNA helicase, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 430
Score = 431 bits (1109), Expect = e-118, Method: Compositional matrix adjust.
Identities = 230/460 (50%), Positives = 291/460 (63%), Gaps = 89/460 (19%)
Query: 39 DNDDLLDYEDEENTEQIV-----ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
D ++L+DY+ E E+I+ A+ GD K KG+YV IHS+GFRDFLLKPE+LR
Sbjct: 5 DEEELVDYD--EAAEEILPPAPAAETNGDKADGDK--KGSYVGIHSTGFRDFLLKPELLR 60
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D + E + V +P+ A+LG D+L
Sbjct: 61 AISD--------------LGFEHPSEVQQECIPQ------------------AILGTDVL 88
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLA LQQ+E D V ++++CHTRELA+QI E+ RFSK+M+N++ G
Sbjct: 89 CQAKSGMGKTAVFVLAALQQIEPVDGEVSIIILCHTRELAYQIKNEFTRFSKFMTNVRTG 148
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VF+GG PI D+E L K P IVVGTPGR +ALVR+KKLN S +KHF+LDECDKMLEQ
Sbjct: 149 VFYGGTPISADQEILANKEKCPHIVVGTPGRTMALVRDKKLNASKVKHFVLDECDKMLEQ 208
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR++PH KQVMMFSATLSK+IR CKKFM P+E+YVDDE KLTLHGLQQ
Sbjct: 209 LDMRRDVQEIFRATPHHKQVMMFSATLSKDIRATCKKFMQSPLEIYVDDETKLTLHGLQQ 268
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
Y+KL+E EKN+KL +LLD LEFNQV IFVKSV R L LL E NFP++ IH G+ Q
Sbjct: 269 FYLKLEEREKNRKLNDLLDNLEFNQVCIFVKSVQRATQLDALLQECNFPSICIHSGLQQA 328
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+ ++Q+FK F K
Sbjct: 329 ERISRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPSDADSYLHRVGRAGRFGTK 388
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAI+F S + D ++L +Q+RF V+I LP+ +D +TY+
Sbjct: 389 GLAISFVSSDADQEVLQRIQERFTVAIPTLPETVDPATYM 428
>gi|403414604|emb|CCM01304.1| predicted protein [Fibroporia radiculosa]
Length = 440
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/469 (50%), Positives = 290/469 (61%), Gaps = 97/469 (20%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEV--------------KGAYVSIHSSGFRD 84
DN++L+DYEDE + +V +GA A V K + IHS+GFRD
Sbjct: 5 DNEELIDYEDEHD---VVTNGAAAPSATNGAVSATAPAVDGEGEKDKKNFSGIHSTGFRD 61
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+LRAI D + E + V +P+
Sbjct: 62 FLLKPELLRAISD--------------LGFEHPSEVQQECIPQ----------------- 90
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
AVLGMD+LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+
Sbjct: 91 -AVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYTRFA 149
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM +++V F+GG P+ KD E L KT P IVV TPGR+ AL R+K L+ S +KHFIL
Sbjct: 150 KYMPDVRVSTFYGGTPVAKDAELLRDKTKCPHIVVATPGRLNALTRDKVLDASKVKHFIL 209
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE
Sbjct: 210 DECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRVTCKKFMANPLEIFVDDET 269
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGL+QHY KL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++
Sbjct: 270 KLTLHGLRQHYAKLEEVAKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSI 329
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
SIH G++QEER+ +Y FK F
Sbjct: 330 SIHSGLSQEERINRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADSYLHRV 389
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E+D +++ +Q RF+V++ ELP+ ID ++Y+
Sbjct: 390 GRAGRFGTKGLAITFVSSESDQQVMLAIQSRFEVAVPELPEHIDPASYM 438
>gi|3776005|emb|CAA09205.1| RNA helicase [Arabidopsis thaliana]
Length = 451
Score = 431 bits (1108), Expect = e-118, Method: Compositional matrix adjust.
Identities = 226/422 (53%), Positives = 278/422 (65%), Gaps = 78/422 (18%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 60 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 103
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 104 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 147
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 148 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 207
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 208 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 267
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R
Sbjct: 268 MQDPMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRADE 327
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L+ LL +FP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 328 LNKLLVGCHFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINY 387
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAITF + +D+++LN VQ+RF+V I ELP++ID ST
Sbjct: 388 DMPDSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTST 447
Query: 444 YI 445
Y+
Sbjct: 448 YM 449
>gi|389646607|ref|XP_003720935.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae 70-15]
gi|152112305|sp|A4RBS3.1|SUB2_MAGO7 RecName: Full=ATP-dependent RNA helicase SUB2
gi|351638327|gb|EHA46192.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae 70-15]
Length = 436
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/467 (49%), Positives = 296/467 (63%), Gaps = 91/467 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEV--------KGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE A A D+ K+ E+ KG+YV IHS+GFRDFLLK
Sbjct: 1 MSAEEDLIDYSDEELNTNETAAPAADSNGKKGELAAGGNVDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAI DC F ++++ I +A+L
Sbjct: 61 PELLRAIGDCG--------FEHPSEVQQTCI------------------------PQAML 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM
Sbjct: 89 GGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMP 148
Query: 209 NIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+IK GVFFGG PIQKD E LK TH P I+VGTPGR+ ALVR+K L LS ++ F+LDEC
Sbjct: 149 DIKTGVFFGGTPIQKDAELLKNKETH-PHIIVGTPGRLNALVRDKFLRLSSVRIFVLDEC 207
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DKML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+CKKFM +P E YVD++ KLT
Sbjct: 208 DKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLT 267
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGLQQ++V L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H
Sbjct: 268 LHGLQQYFVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVH 327
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G++QEER+++Y+EFK+F+
Sbjct: 328 SGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRA 387
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
KGLA++F +++ D ++L ++ RF+V I E P D ID STY+
Sbjct: 388 GRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYM 434
>gi|389742315|gb|EIM83502.1| P-loop containing nucleoside triphosphate hydrolase protein
[Stereum hirsutum FP-91666 SS1]
Length = 435
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 235/464 (50%), Positives = 291/464 (62%), Gaps = 92/464 (19%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGA---------YVSIHSSGFRDFLLKP 89
DN++L+DYEDE++ +V +GA + V A + IHS+GFRDFLLKP
Sbjct: 5 DNEELIDYEDEQD---VVPNGAAAPASNGAAVTAADGDDKDKKNFSGIHSTGFRDFLLKP 61
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAI D + E + V +P+ AVLG
Sbjct: 62 ELLRAISD--------------LGFEHPSEVQQECIPQ------------------AVLG 89
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY RF+KYM +
Sbjct: 90 MDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIKNEYTRFAKYMPD 149
Query: 210 IKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
++V FFGG P+ KD E L KT P IVV TPGR+ ALVR+K ++ +KHF+LDECDK
Sbjct: 150 VRVVTFFGGTPVSKDAELLRDKTKCPHIVVATPGRLNALVRDKVMDAKNVKHFVLDECDK 209
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
MLEQL+MRRDVQ+IFRS+PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTLH
Sbjct: 210 MLEQLDMRRDVQDIFRSTPHHKQVMMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLH 269
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQH+VKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G
Sbjct: 270 GLQQHFVKLEEVGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHSG 329
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
+ QEER+ +YQ FK F
Sbjct: 330 LAQEERISRYQAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGR 389
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E D +++ +Q RF+V+I ELP+ ID ++Y+
Sbjct: 390 FGTKGLAITFQSSEADQQVMATIQSRFEVAIPELPEHIDPASYM 433
>gi|86196514|gb|EAQ71152.1| hypothetical protein MGCH7_ch7g559 [Magnaporthe oryzae 70-15]
gi|440472238|gb|ELQ41114.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae Y34]
gi|440482200|gb|ELQ62715.1| ATP-dependent RNA helicase SUB2 [Magnaporthe oryzae P131]
Length = 450
Score = 431 bits (1107), Expect = e-118, Method: Compositional matrix adjust.
Identities = 232/472 (49%), Positives = 297/472 (62%), Gaps = 87/472 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEV--------KGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE A A D+ K+ E+ KG+YV IHS+GFRDFLLK
Sbjct: 1 MSAEEDLIDYSDEELNTNETAAPAADSNGKKGELAAGGNVDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT---- 144
PE+LRAI DC ++ P + + + G
Sbjct: 61 PELLRAIGDC-----------------------GFEHPSEDGLNILCGCQGGAHACITCI 97
Query: 145 -KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
+A+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RF
Sbjct: 98 PQAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRF 157
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
SKYM +IK GVFFGG PIQKD E LK TH P I+VGTPGR+ ALVR+K L LS ++ F
Sbjct: 158 SKYMPDIKTGVFFGGTPIQKDAELLKNKETH-PHIIVGTPGRLNALVRDKFLRLSSVRIF 216
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+CKKFM +P E YVD+
Sbjct: 217 VLDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVDE 276
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ++V L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP
Sbjct: 277 DTKLTLHGLQQYFVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFP 336
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+++Y+EFK+F+
Sbjct: 337 SIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLH 396
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
KGLA++F +++ D ++L ++ RF+V I E P D ID STY+
Sbjct: 397 RVGRAGRFGTKGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYM 448
>gi|388856284|emb|CCF50093.1| probable ATP-dependent RNA helicase [Ustilago hordei]
Length = 431
Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust.
Identities = 224/457 (49%), Positives = 296/457 (64%), Gaps = 82/457 (17%)
Query: 39 DNDDLLDYEDEENT--EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
DN+DL+DYE+E A K+ KG+YV IHS+GFRDFLLKPE+LRAI
Sbjct: 5 DNEDLIDYEEEVAVAPSSTTNAAAAATADADKDKKGSYVGIHSTGFRDFLLKPELLRAIS 64
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D + E + V +P+ ++LGMD++CQA
Sbjct: 65 D--------------LGFEHPSEVQQECIPQ------------------SILGMDVVCQA 92
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQ+E D V VLV+CHTRELA+QI EY RF+KYM +++ GV +
Sbjct: 93 KSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRELAYQIRNEYHRFTKYMPDVRTGVIY 152
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG P+ +++ LK + P I+VGTPGR+ ALVR+K L +S +KHF++DECDK+LEQ++M
Sbjct: 153 GGTPVAENQAMLKDKSKCPHILVGTPGRMNALVRDKSLKVSGVKHFVIDECDKILEQVDM 212
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR++PH KQVMMFSATL+KE+RP CKKFM +P+E+YVDDE KLTLHGLQQHYV
Sbjct: 213 RRDVQDIFRATPHHKQVMMFSATLAKEVRPTCKKFMQNPLEIYVDDETKLTLHGLQQHYV 272
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
+L+E+ KN+KL +LLD LEFNQV+IFVKS++R L LL E NFP++ IH G+ QEER+
Sbjct: 273 RLEESAKNRKLNDLLDSLEFNQVIIFVKSISRANELDKLLRECNFPSICIHGGLGQEERI 332
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
K+YQ+FK+F KGLA
Sbjct: 333 KRYQQFKNFEKRILVATDIFGRGIDVERVNVSISYDTPSDADSYLHRVGRAGRFGTKGLA 392
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
I F S + DA++L +Q RF+V++ ELP+ I+ S+Y+
Sbjct: 393 IMFVSSDEDAEVLKQIQSRFEVAVPELPETIEASSYM 429
>gi|164657043|ref|XP_001729648.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
gi|159103541|gb|EDP42434.1| hypothetical protein MGL_3192 [Malassezia globosa CBS 7966]
Length = 435
Score = 429 bits (1104), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/466 (48%), Positives = 293/466 (62%), Gaps = 93/466 (19%)
Query: 39 DNDDLLDYEDE-----------ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLL 87
+N+DL+DYE+E + A AGD K KG+YV IHS+GFRDFLL
Sbjct: 2 ENEDLIDYEEEVSVPPSGTTQADTNASAGAAPAGDGDEGNK--KGSYVGIHSTGFRDFLL 59
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPE+LRAI D + E + V +P+ ++
Sbjct: 60 KPELLRAISD--------------LGFEHPSEVQQECIPQ------------------SI 87
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
LGMD++CQAKSGMGKTAVFVLA+LQQLE D V VLV+CHTRELA+QI EY RF+KYM
Sbjct: 88 LGMDVVCQAKSGMGKTAVFVLASLQQLEPVDGEVSVLVLCHTRELAYQIRNEYARFTKYM 147
Query: 208 SNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ V +GG PI++D+ L K P I+VGTPGR+ LVR+K L +KHF++DEC
Sbjct: 148 PEVRTSVVYGGTPIKEDQAMLADKAKCPHILVGTPGRMNGLVRDKSLKAGDVKHFVIDEC 207
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L+ L+MRRDVQEIFR++PH KQVMMFSATL+KEIRP CKKFM +P+E+YVDDE KLT
Sbjct: 208 DKILDNLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRPTCKKFMQNPLEIYVDDETKLT 267
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGLQQ+YV+L+E KN+KL +LLD LEFNQV+IFVKS++R L LL E NFP++ IH
Sbjct: 268 LHGLQQYYVRLEEAGKNRKLNDLLDTLEFNQVIIFVKSISRANQLDQLLRECNFPSICIH 327
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G+ Q+ER+K+YQ+FK+F
Sbjct: 328 GGLPQDERIKRYQQFKNFEKRILVATDIFGRGIDVERVNVSISYDTPSDADSYLHRVGRA 387
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + DA++L +Q RF+V++ ELP+ I+ STY+
Sbjct: 388 GRFGTKGLAITFVSSDEDAEVLKQIQSRFEVAVPELPETIEASTYM 433
>gi|343425824|emb|CBQ69357.1| probable ATP-dependent RNA helicase [Sporisorium reilianum SRZ2]
Length = 436
Score = 429 bits (1102), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/462 (48%), Positives = 298/462 (64%), Gaps = 87/462 (18%)
Query: 39 DNDDLLDYEDE-------ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
DN+DL+DYE+E N +GA K+ KG+YV IHS+GFRDFLLKPE+
Sbjct: 5 DNEDLIDYEEEVAVALTSTNGAAATGNGAAATADADKDKKGSYVGIHSTGFRDFLLKPEL 64
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI D + E + V +P+ ++LGMD
Sbjct: 65 LRAISD--------------LGFEHPSEVQQECIPQ------------------SILGMD 92
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRELA+QI EY RF+KYM +++
Sbjct: 93 VVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRELAYQIRNEYARFTKYMPDVR 152
Query: 212 VGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
GV +GG P+ +++ LK P I+VGTPGR+ ALVR+K L +S +KHF++DECDK+L
Sbjct: 153 TGVIYGGTPVAENQAMLKDKAKCPHILVGTPGRMNALVRDKSLKVSGVKHFVIDECDKIL 212
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
EQ++MRRDVQ+IFR++PH KQVMMFSATL+KE+RP CKKFM +P+E+YVDDE KLTLHGL
Sbjct: 213 EQVDMRRDVQDIFRATPHHKQVMMFSATLAKEVRPTCKKFMQNPLEIYVDDETKLTLHGL 272
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQHYV+L+E+ KN+KL +LLD LEFNQV+IFVKS++R L LL E NFP++ IH G+
Sbjct: 273 QQHYVRLEESAKNRKLNDLLDSLEFNQVIIFVKSISRANELDKLLRECNFPSICIHGGLA 332
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+K+YQ+FK+F
Sbjct: 333 QEERIKRYQQFKNFEKRILVATDIFGRGIDVERVNVSISYDTPTDADSYLHRVGRAGRFG 392
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI F S + DA++L +Q RF+V++ ELP+ I+ S+Y+
Sbjct: 393 TKGLAIMFVSSDEDAEVLKQIQSRFEVAVPELPETIEASSYM 434
>gi|255553153|ref|XP_002517619.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223543251|gb|EEF44783.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 427
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 225/421 (53%), Positives = 275/421 (65%), Gaps = 78/421 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAI+D E + V + +P+
Sbjct: 37 KKGYVGIHSSGFRDFLLKPELLRAIIDSG--------------FEHPSEVQHECIPQ--- 79
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGM ++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 80 ---------------AILGMHVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTR 124
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ ++KV VF+GG+ I+ ++ LK P +VVGTPGRILAL R+K
Sbjct: 125 ELAYQICHEFERFSTYLPDLKVSVFYGGVNIKIHKDLLKNECPHVVVGTPGRILALARDK 184
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L L ++HFILDECDKMLE L+MRRDVQEIF+ +P+ KQVMMFSATLSKEIRPVCKKFM
Sbjct: 185 DLGLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPYDKQVMMFSATLSKEIRPVCKKFM 244
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
PME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 245 QAPMEIYVDDEAKLTLHGLVQHYIKLTELEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 304
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------- 404
+ LL E NFP++ IH GM+QEERL KY+ FK+ H
Sbjct: 305 NKLLMECNFPSICIHSGMSQEERLTKYKNFKEGHKRILVATDLVGRGIDIERVNIVINYD 364
Query: 405 --------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF S +D+ +LN VQ RF+V I ELP++ID STY
Sbjct: 365 MPDSADTYLHRVGRAGRFGTKGLAITFVSSASDSDVLNQVQARFEVDIKELPEQIDTSTY 424
Query: 445 I 445
+
Sbjct: 425 M 425
>gi|71021713|ref|XP_761087.1| hypothetical protein UM04940.1 [Ustilago maydis 521]
gi|46100537|gb|EAK85770.1| hypothetical protein UM04940.1 [Ustilago maydis 521]
Length = 542
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 217/424 (51%), Positives = 282/424 (66%), Gaps = 52/424 (12%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G+YV IHS+GFRDFLLKPE+LRAI D L + + R F P D
Sbjct: 123 GSYVGIHSTGFRDFLLKPELLRAISDLDAQPKPQML---ALPLARYLERFQLTNPPDL-V 178
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191
L +++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTRE
Sbjct: 179 RLPISTVQQECIPQSILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTRE 238
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRN 249
LA+QI EY RF+KYM +++ GV +GG P+ +++ LK P I+VGTPGR+ ALVR+
Sbjct: 239 LAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLKDKAKCPHILVGTPGRMNALVRD 298
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L +S +KHF++DECDK+LEQ++MRRDVQ+IFR++PH KQVMMFSATL+KE+RP CKKF
Sbjct: 299 KSLKVSGVKHFVIDECDKILEQVDMRRDVQDIFRATPHHKQVMMFSATLAKEVRPTCKKF 358
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M +P+E+YVDDE KLTLHGLQQHYV+L+E+ KN+KL +LLD LEFNQV+IFVKS++R
Sbjct: 359 MQNPLEIYVDDETKLTLHGLQQHYVRLEESAKNRKLNDLLDSLEFNQVIIFVKSISRANE 418
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L LL E NFP++ IH G+ QEER+K+YQ+FK+F
Sbjct: 419 LDKLLRECNFPSICIHGGLAQEERIKRYQQFKNFEKRILVATDIFGRGIDVERVNVSISY 478
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGLAI F S + DA++L +Q RF+V++ ELPD I+ S+
Sbjct: 479 DTPTDADSYLHRVGRAGRFGTKGLAIMFVSSDEDAEVLKQIQSRFEVAVPELPDTIEASS 538
Query: 444 YIEG 447
Y+
Sbjct: 539 YMNA 542
>gi|320586489|gb|EFW99159.1| ATP dependent RNA helicase [Grosmannia clavigera kw1407]
Length = 440
Score = 428 bits (1101), Expect = e-117, Method: Compositional matrix adjust.
Identities = 229/470 (48%), Positives = 295/470 (62%), Gaps = 93/470 (19%)
Query: 37 MADNDDLLDYEDEE--NTEQIVADG-------AGDALAKQK---EVKGAYVSIHSSGFRD 84
M+ +DL+DY DEE TE ++G GDA A + KG+YV IHS+GFRD
Sbjct: 1 MSAEEDLIDYSDEELNTTEGATSNGKKGSATAGGDASAAGSNSVDKKGSYVGIHSTGFRD 60
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RA DC F ++++ I
Sbjct: 61 FLLKPELFRATADCG--------FEHPSEVQQTCI------------------------P 88
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A++G DI+CQAKSG+GKTAVFVLATLQQ+E VLVMCHTRELAFQI EY RFS
Sbjct: 89 QALIGGDIICQAKSGLGKTAVFVLATLQQIEPVAGECSVLVMCHTRELAFQIRNEYNRFS 148
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM IK GVF+GG PIQKD E L K +P I+VGTPGR+ ALVR+K L L ++ F+L
Sbjct: 149 KYMPEIKTGVFYGGTPIQKDAEILRNKETHPHIIVGTPGRLNALVRDKYLRLGSVRIFVL 208
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++
Sbjct: 209 DECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDT 268
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++
Sbjct: 269 KLTLHGLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTVRATELDKLLRECNFPSI 328
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H G++QEER+++Y+EFK+F+
Sbjct: 329 AVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRV 388
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
KGLAI+F S+E D ++L ++ RF+V++ E P D ID STY+
Sbjct: 389 GRAGRFGTKGLAISFVSNEQDKEVLKAIEKRFEVALPEFPKDGIDASTYM 438
>gi|353241933|emb|CCA73713.1| probable SUB2-mRNA export protein, member of the DEAD-box RNA
helicase superfamily [Piriformospora indica DSM 11827]
Length = 444
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/455 (49%), Positives = 296/455 (65%), Gaps = 80/455 (17%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD++ L DYEDE + GAG ++ K Y IHSSGFRDFLLK E+LRAI
Sbjct: 1 MADHE-LADYEDEPEYPTVAGAGAGAVAGTEEGDKKNYAGIHSSGFRDFLLKQELLRAIS 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D + E + V +P+ A+LGMD+LCQA
Sbjct: 60 D--------------LGFEHPSEVQQECIPQ------------------AILGMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSG GKTAVFVLATLQQL+T+++ V V+V+CHTRELAFQI EY RF++YM +++ VF+
Sbjct: 88 KSGHGKTAVFVLATLQQLDTSENKVSVIVLCHTRELAFQIKNEYSRFARYMPDVRTAVFY 147
Query: 217 GGLPIQKDEEYLKTHN-PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
GG P+QKD+E LK+ P I+V TPGR+ AL R+K LN S +KHF+LDECDKMLEQL+MR
Sbjct: 148 GGTPVQKDQELLKSAEVPHIIVATPGRLNALARDKSLNASGVKHFVLDECDKMLEQLDMR 207
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQEIFR +PH+KQVMMFSATLSKEIR CKKFM++P+E+++DDE+KLTLHGLQQH+++
Sbjct: 208 RDVQEIFRITPHSKQVMMFSATLSKEIRVTCKKFMNNPLEIFIDDESKLTLHGLQQHFLR 267
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L+E +KN+KL +LLD L+FNQVVIFVKSV R + L LL E FP +++H G++QEER+
Sbjct: 268 LEETQKNRKLNDLLDTLDFNQVVIFVKSVGRAVELDKLLRECGFPCITVHSGLSQEERIS 327
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+Y+EFK+F KGLA+
Sbjct: 328 RYKEFKNFEKRILVATDIFGRGIDVERVNIVINYDTPADADSYLHRVGRAGRFGTKGLAL 387
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
TF S + D +L +Q RF+V+I+E+P E+D +TY
Sbjct: 388 TFVSSQADLDVLEKIQSRFEVAITEMPAELDKTTY 422
>gi|310791038|gb|EFQ26567.1| DEAD/DEAH box helicase [Glomerella graminicola M1.001]
Length = 433
Score = 428 bits (1100), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/463 (49%), Positives = 296/463 (63%), Gaps = 86/463 (18%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGAG---DALAKQK-EVKGAYVSIHSSGFRDFLLKPEI 91
M+ +DL+DY DEE T + A G DA A + KG+YV IHS+GFRDFLLKPE+
Sbjct: 1 MSAEEDLIDYSDEELQTNETAAASNGKKADAAAGNNVDKKGSYVGIHSTGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI DC F ++++ I +A+LG D
Sbjct: 61 LRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGGD 88
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
I+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRELAFQI EY RFSKYM +IK
Sbjct: 89 IICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIK 148
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
GVF+GG PIQKD E +K P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML
Sbjct: 149 TGVFYGGTPIQKDVETIKNKETCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKML 208
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLHGL
Sbjct: 209 DQIDMRRDVQEIFRATPTQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGL 268
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++
Sbjct: 269 QQYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVS 328
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+++Y+EFK+F+
Sbjct: 329 QEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFG 388
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +++ RF+V++ E P E ID STY+
Sbjct: 389 TKGLAISFVSTDQDQEVLKSIEKRFEVALPEFPKEGIDASTYM 431
>gi|340975684|gb|EGS22799.1| hypothetical protein CTHT_0012740 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 434
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/464 (49%), Positives = 292/464 (62%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGAG---DALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E N E G DA A + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDDELNNESTGPSANGKKADAAASTQNVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVPGECSVLVMCHTRELAFQIRNEYNRFSKYMPEI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVF+GG PIQKD E LK + P I+VGTPGR+ ALVR K L L ++ F+LDECDKM
Sbjct: 149 KTGVFYGGTPIQKDAEILKNKDTHPHIIVGTPGRLNALVREKYLRLGSVRMFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G+
Sbjct: 269 LQQYYIALEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGI 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+++Y+EFK+F+
Sbjct: 329 SQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 GTKGLAISFVSSDQDREVLKAIEKRFEVALPEFPKEGVDASTYM 432
>gi|367042132|ref|XP_003651446.1| hypothetical protein THITE_2111758 [Thielavia terrestris NRRL 8126]
gi|346998708|gb|AEO65110.1| hypothetical protein THITE_2111758 [Thielavia terrestris NRRL 8126]
Length = 434
Score = 427 bits (1099), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 297/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEE---NTEQIVADGA-GDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E +T A+G GDA A + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDDELNNDTAAAAANGKKGDAGAAGQNVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKD E LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDAEILKNKETH-PHIIVGTPGRLNALVRDKNLRLGSVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 VSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + D +L ++ RF+V++ E P E +D STY+
Sbjct: 388 FGTKGLAISFVTTDQDKDVLQQIEKRFEVALPEFPKEGVDASTYM 432
>gi|380495255|emb|CCF32532.1| ATP-dependent RNA helicase SUB2 [Colletotrichum higginsianum]
Length = 433
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 230/463 (49%), Positives = 295/463 (63%), Gaps = 86/463 (18%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGAG---DALAKQK-EVKGAYVSIHSSGFRDFLLKPEI 91
M+ +DL+DY DEE T + A G DA A + KG+YV IHS+GFRDFLLKPE+
Sbjct: 1 MSAEEDLIDYSDEELQTNETAAASNGKKADAAAGNNVDKKGSYVGIHSTGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI DC F ++++ I +A+LG D
Sbjct: 61 LRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGGD 88
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
I+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRELAFQI EY RFSKYM +IK
Sbjct: 89 IICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIK 148
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
GVF+GG PIQKD E +K P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML
Sbjct: 149 TGVFYGGTPIQKDVETIKNKETCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKML 208
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLHGL
Sbjct: 209 DQIDMRRDVQEIFRATPTQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLHGL 268
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++
Sbjct: 269 QQYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVS 328
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+++Y+EFK+F+
Sbjct: 329 QEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFG 388
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 389 TKGLAISFVSTDQDQEVLKAIEKRFEVALPEFPKEGIDASTYM 431
>gi|119173036|ref|XP_001239034.1| hypothetical protein CIMG_10056 [Coccidioides immitis RS]
gi|303324075|ref|XP_003072025.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|118577977|sp|Q1DI07.1|SUB2_COCIM RecName: Full=ATP-dependent RNA helicase SUB2
gi|240111735|gb|EER29880.1| ATP-dependent RNA helicase, putative [Coccidioides posadasii C735
delta SOWgp]
gi|392869242|gb|EAS27144.2| ATP-dependent RNA helicase SUB2 [Coccidioides immitis RS]
Length = 443
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 228/474 (48%), Positives = 294/474 (62%), Gaps = 97/474 (20%)
Query: 37 MADNDDLLDYEDEE----------------NTEQIVADGAGDALAKQKEVKGAYVSIHSS 80
M+ +DL+DY DEE V G + + KG+YV +HS+
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHST 60
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFRDFLLKPE+LRAI DC F ++++V I
Sbjct: 61 GFRDFLLKPELLRAITDCG--------FEHPSEVQQVCI--------------------- 91
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 92 ---PTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEY 148
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLK 258
RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR KKL+L +K
Sbjct: 149 ARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIK 208
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
F+LDECDKML+Q++MRRDVQEIFRS+P KQVMMFSATLS+EIRP+CKKFM +P+EVYV
Sbjct: 209 AFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYV 268
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DD+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E N
Sbjct: 269 DDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRECN 328
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 FPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSY 388
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S E+D K L +++ RF+V++ E P+E +D STY+
Sbjct: 389 LHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEEGVDASTYM 442
>gi|402220874|gb|EJU00944.1| ATP-dependent RNA helicase SUB2 [Dacryopinax sp. DJM-731 SS1]
Length = 444
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 237/474 (50%), Positives = 296/474 (62%), Gaps = 99/474 (20%)
Query: 37 MADN-DDLLDYEDEENTEQI----------------VADGAGDALAKQKEVKGAYVSIHS 79
MADN ++L+DY+++ + DGAG+ + + K + +IHS
Sbjct: 1 MADNAEELVDYDEDLTINEPATAPAATAVSTTNGHGATDGAGEEDVEDE--KKGFGTIHS 58
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
+GFRDFLLK E+LRAI + + E + V +P+
Sbjct: 59 TGFRDFLLKLELLRAISE--------------LGFEHPSEVQQECIPQ------------ 92
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
AVLGMD+LCQAKSG GKTAVFVLATLQQLE D V VLVMCHTRELA+QI E
Sbjct: 93 ------AVLGMDVLCQAKSGHGKTAVFVLATLQQLEPVDGEVTVLVMCHTRELAYQIKNE 146
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLL 257
Y RFSKYM +I+ VF+GG PI+ D E LK N P IVVGTPGR+ ALVR++ LN S +
Sbjct: 147 YGRFSKYMPDIRTAVFYGGTPIKNDIELLKDKNRCPHIVVGTPGRLNALVRDRVLNPSTV 206
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHF+LDECDKMLEQL+MRRDVQEIFR++PH KQVMMFSATLSKE+R CKKFM +P+E++
Sbjct: 207 KHFVLDECDKMLEQLDMRRDVQEIFRATPHHKQVMMFSATLSKEVRITCKKFMQNPLEIF 266
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDEAKLTLHGLQQHYV+L+E++KN+KL +LLD LEFNQV IFVKSV R L LL E
Sbjct: 267 VDDEAKLTLHGLQQHYVRLEESQKNRKLNDLLDTLEFNQVCIFVKSVARANELDKLLVEC 326
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
FP++ IH G+ QEER+K+YQ+FK F
Sbjct: 327 GFPSICIHSGLPQEERIKRYQQFKQFEKRILVATDIFGRGIDVERVNIVINYDMPTDADS 386
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF +++ DA+IL +Q RF+V+I +LP EI TY+
Sbjct: 387 YLHRVGRAGRFGTKGLAITFVANDADAEILKQIQSRFEVAIPDLPAEIPAETYM 440
>gi|395326047|gb|EJF58461.1| P-loop containing nucleoside triphosphate hydrolase protein
[Dichomitus squalens LYAD-421 SS1]
Length = 438
Score = 427 bits (1097), Expect = e-117, Method: Compositional matrix adjust.
Identities = 234/464 (50%), Positives = 290/464 (62%), Gaps = 89/464 (19%)
Query: 39 DNDDLLDYEDEENT---EQIVADGAGDALAKQ------KEVKGAYVSIHSSGFRDFLLKP 89
DN++L+DYEDE + A G G A+A ++ K + IHS+GFRDFLLKP
Sbjct: 5 DNEELIDYEDEHDVVTNGPPAAAGNGSAVAAPAADGDGEKDKKNFSGIHSTGFRDFLLKP 64
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAI D + E + V +P+ AVLG
Sbjct: 65 ELLRAISD--------------LGFEHPSEVQQECIPQ------------------AVLG 92
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY RF+KYM +
Sbjct: 93 MDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIRNEYSRFAKYMPD 152
Query: 210 IKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
++V FFGG P+ KD + L K+ P IVV TPGR+ ALVR+K L+ S +KHFILDECDK
Sbjct: 153 VRVNTFFGGTPVVKDADLLRDKSKCPHIVVATPGRLNALVRDKVLDASKIKHFILDECDK 212
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
MLEQL+MRRDVQEIFR++P KQVMMFSATL+KEIR CKKFM P+E++VDDE KLTLH
Sbjct: 213 MLEQLDMRRDVQEIFRATPLHKQVMMFSATLAKEIRITCKKFMDHPLEIFVDDETKLTLH 272
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQHYVKL+E KN+KL ELLD L+FNQVVIFVKSV R I L LL NFP+++IH G
Sbjct: 273 GLQQHYVKLEEVAKNRKLNELLDTLDFNQVVIFVKSVARAIELDKLLVSCNFPSIAIHSG 332
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
+ QEER+ +Y FK F
Sbjct: 333 LAQEERISRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADSYLHRVGRAGR 392
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E+D +++ +Q RF+V++ ELPD ID ++Y+
Sbjct: 393 FGTKGLAITFVSSESDQQVMAAIQSRFEVAVPELPDHIDPASYM 436
>gi|320162590|gb|EFW39489.1| nuclear RNA helicase [Capsaspora owczarzaki ATCC 30864]
Length = 433
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 227/458 (49%), Positives = 282/458 (61%), Gaps = 90/458 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
+DL DY ++E DA K K+VKG +V +HS+GFRD +LKPE+LRAI +C
Sbjct: 15 EDLPDYNEDEEI------ATPDATVK-KDVKGGHVGMHSAGFRDLMLKPELLRAITECG- 66
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A LG DI+CQAKSGM
Sbjct: 67 -------FEHPSEVQHACI------------------------PQANLGSDIICQAKSGM 95
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL+TLQQL T+ V VLV+CHTRELAFQI E++RF K+M IK VF+GG P
Sbjct: 96 GKTAVFVLSTLQQLVPTEGEVSVLVLCHTRELAFQIKNEFDRFIKFMPTIKTDVFYGGTP 155
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVR-----NKKLNLSLLKHFILDECDKMLEQLEMR 275
I++DE L P +VVGTPGRILAL +LNLS +KHF+LDECD+ML+Q++MR
Sbjct: 156 IKQDETKLAAGTPNVVVGTPGRILALSTPDASGKARLNLSHVKHFVLDECDRMLDQVDMR 215
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
+DVQ+IF +PH KQVMMFSATL K +RP CKKFMHDPME+YVDDE KLTLHGLQQ+Y K
Sbjct: 216 KDVQKIFIQTPHKKQVMMFSATLDKALRPTCKKFMHDPMEIYVDDETKLTLHGLQQYYFK 275
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L E +KNKKL LLD LEFNQVVIFVKSV R L+ LL E NFPA++IH M Q+ER++
Sbjct: 276 LTEQDKNKKLNALLDALEFNQVVIFVKSVNRAKELTKLLVECNFPAIAIHSAMPQDERIQ 335
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+YQ FK+F KGLA+
Sbjct: 336 RYQNFKNFQSRILVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVARAGRFGTKGLAV 395
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
TF S E DA IL+ VQ RF+V I LP+ ID+++Y+
Sbjct: 396 TFVSSEEDATILSQVQSRFEVQIDALPETIDMTSYMNA 433
>gi|331227385|ref|XP_003326361.1| ATP-dependent RNA helicase uap56 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309305351|gb|EFP81942.1| ATP-dependent RNA helicase uap56 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 433
Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust.
Identities = 226/459 (49%), Positives = 293/459 (63%), Gaps = 87/459 (18%)
Query: 41 DDLLDY-EDEENTEQIVA-----DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
+DL+DY ED+ A +GA L K+ KG+YV IHS+GFRDFLLKPE+LRA
Sbjct: 6 EDLIDYDEDDAGVAPSAAVTSTTNGAAAPL-NGKDQKGSYVGIHSTGFRDFLLKPELLRA 64
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D + E + V +P+ A+LGMD+LC
Sbjct: 65 ISD--------------LGFEHPSEVQQECIPQ------------------AILGMDVLC 92
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFV ATLQQ++ + V +LV+CHTRELA+QI EY RFSKYM +I+ V
Sbjct: 93 QAKSGMGKTAVFVTATLQQMDPKEGEVSMLVLCHTRELAYQIKNEYARFSKYMPDIRTAV 152
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
+GG+PI++D E LK + P I+VGTPGR+ ALVR+ L + ++ F+LDECDKMLE +
Sbjct: 153 VYGGIPIKQDAEMLKAKDKCPHILVGTPGRLNALVRDGLLKCNTVRTFVLDECDKMLESV 212
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ++F ++PH KQVMMFSATLSKEIRPVCKKFM +P+E+YVDDEAKLTLHGLQQH
Sbjct: 213 DMRRDVQQVFLATPHAKQVMMFSATLSKEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQH 272
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
+VK+ E KN+KL +LLD LEFNQV IFVKSV+R + L LL + NFP+++IH G+ QEE
Sbjct: 273 FVKIDEAAKNRKLNDLLDTLEFNQVCIFVKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEE 332
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+ +Y++FK F KG
Sbjct: 333 RIDRYKQFKAFEKRILVATDIFGRGIDVERVNIVINYDTPGEADSYLHRVGRAGRFGTKG 392
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
LAITF S E D +L+ +Q RF+V+I+ELPD I+ S+Y+
Sbjct: 393 LAITFVSSEADQTVLDAIQSRFEVAITELPDHIEASSYM 431
>gi|116193535|ref|XP_001222580.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
gi|118577976|sp|Q2H4D0.1|SUB2_CHAGB RecName: Full=ATP-dependent RNA helicase SUB2
gi|88182398|gb|EAQ89866.1| ATP-dependent RNA helicase [Chaetomium globosum CBS 148.51]
Length = 434
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/465 (49%), Positives = 296/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGA----GDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E + A + GDA A + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSGEEDLIDYSDDELNNETTAPASNGKKGDAAAAAQNVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKD E LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDAEVLKNKETH-PHIIVGTPGRLNALVRDKHLRLGNVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATL+ EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLADEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 VSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 388 FGTKGLAISFVNSDQDKEVLQQIEKRFEVALPEFPKEGIDASTYM 432
>gi|358058468|dbj|GAA95431.1| hypothetical protein E5Q_02085 [Mixia osmundae IAM 14324]
Length = 429
Score = 426 bits (1095), Expect = e-116, Method: Compositional matrix adjust.
Identities = 230/459 (50%), Positives = 284/459 (61%), Gaps = 82/459 (17%)
Query: 37 MADN-DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
MADN +DL+DYE+EE A A+ K+ KG+YV IHS+GFRDFLLKPE+LRAI
Sbjct: 1 MADNQEDLIDYEEEELPPVTTAPAGEMGAAESKDQKGSYVGIHSTGFRDFLLKPELLRAI 60
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
D + E + V +P+ A+LGMD+LCQ
Sbjct: 61 SD--------------LGFEHPSEVQQECIPQ------------------AILGMDVLCQ 88
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSGMGKTAVFV ATLQQ+E D V V+V+CHTRELA+QI EY RFSKYM +++ VF
Sbjct: 89 AKSGMGKTAVFVTATLQQIEPVDGEVAVIVLCHTRELAYQIKNEYARFSKYMPDVRTSVF 148
Query: 216 FGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
+GG +KD E LK P +VV TPGR+ ALVR+K L +KHF+LDECDKMLE ++
Sbjct: 149 YGGTDPKKDAEVLKDKEKCPHVVVATPGRLNALVRDKVLKCGNVKHFVLDECDKMLEAVD 208
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR++PH KQVMMFSATL+K+IR CKKFM P+E+YVDDE KLTLHGLQQHY
Sbjct: 209 MRRDVQEIFRATPHGKQVMMFSATLAKDIRVTCKKFMQSPLEIYVDDETKLTLHGLQQHY 268
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
V+L+E KN+KL +LLD LEFNQV IFVKSV R L LL E FP++ IH G+ QEER
Sbjct: 269 VRLEEAGKNRKLNDLLDSLEFNQVCIFVKSVPRATELDRLLRECQFPSICIHSGLPQEER 328
Query: 394 LKKYQEFKDFHK----------------------------------------------GL 407
+KKYQ+FK F K GL
Sbjct: 329 IKKYQQFKSFEKRILVATDIFGRGIDVERVNVVINYDAPTEADSYLHRVARAGRFGGRGL 388
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
AITF + E D ++L +Q RF+V I+ +P E + TY+
Sbjct: 389 AITFVTGEGDEEVLKAIQSRFEVGITPMPAEGVAPETYM 427
>gi|400600996|gb|EJP68664.1| DEAD/DEAH box helicase [Beauveria bassiana ARSEF 2860]
Length = 432
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 224/466 (48%), Positives = 297/466 (63%), Gaps = 93/466 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEV--------KGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE I A+ +A K+ E+ KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEE----IGANETANAATKKGELAANSNVDKKGSYVGIHSTGFRDFLLK 56
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAI DC F ++++ I +A+L
Sbjct: 57 PELLRAIGDCG--------FEHPSEVQQTCI------------------------PQALL 84
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM
Sbjct: 85 GGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMP 144
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
+IK GVF+GG PI+ D E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECD
Sbjct: 145 DIKTGVFYGGTPIKTDVETLKNKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECD 204
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KML+Q +MR DVQ++FR++PH KQVMMFSATLS+E++P+CKKFM +P E YVD++ KLTL
Sbjct: 205 KMLDQPDMRTDVQDVFRATPHQKQVMMFSATLSEEVKPICKKFMQNPTEHYVDEDTKLTL 264
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+Y+KL E EKN+KL +LLD L+FNQV+IFV+S R L LL E NFP++++H
Sbjct: 265 HGLQQYYIKLDEKEKNRKLNDLLDELQFNQVIIFVRSTARATELDKLLRECNFPSIAVHS 324
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G++QEER+++Y+EFK+F
Sbjct: 325 GVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLSADASSYLHRVGRAG 384
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S E+D K+L ++ RF+V++ E P E +D STY+
Sbjct: 385 RFGTKGLAISFISSEDDQKVLGEIEKRFEVALPEFPKEGVDASTYM 430
>gi|168985559|emb|CAQ10637.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 289
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/323 (69%), Positives = 249/323 (77%), Gaps = 37/323 (11%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQ 356
VKLK+NEKN+KLF+LLDVLEFNQ
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQ 289
>gi|121704012|ref|XP_001270270.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
NRRL 1]
gi|143586067|sp|A1CMQ7.1|SUB2_ASPCL RecName: Full=ATP-dependent RNA helicase sub2
gi|119398414|gb|EAW08844.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus clavatus
NRRL 1]
Length = 441
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/472 (49%), Positives = 298/472 (63%), Gaps = 95/472 (20%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADGAGD------ALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE T A+GA D + + KG+YV IHS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPAANGAQDKKGDLTVSGGRPDKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDFLLK E+LRAI DC F ++++V I
Sbjct: 61 RDFLLKGELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR+KKL+L +K F
Sbjct: 149 FSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAF 208
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM +P+EVYVDD
Sbjct: 209 VLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDD 268
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 269 DTKLTLHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFP 328
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 SIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLH 388
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S+E+D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 389 RVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440
>gi|336264515|ref|XP_003347034.1| hypothetical protein SMAC_05233 [Sordaria macrospora k-hell]
gi|380093114|emb|CCC09351.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 434
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/465 (48%), Positives = 295/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAG---DALAKQKEV---KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E + A G +A+ + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDDELNNESAAPTNGKKAEAVPAGQTVDTKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKD E LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDAEILKNKETH-PHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 VSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 388 FGTKGLAISFVTTDQDKEVLKAIEKRFEVALPEFPKEGIDASTYM 432
>gi|336463284|gb|EGO51524.1| ATP-dependent RNA helicase [Neurospora tetrasperma FGSC 2508]
gi|350297513|gb|EGZ78490.1| ATP-dependent RNA helicase [Neurospora tetrasperma FGSC 2509]
Length = 434
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/465 (48%), Positives = 295/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAG---DALAKQKEV---KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E + A G +A+ + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDDELNNESAAPTNGKKAEAVPAGQTVDTKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKD E LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDAEVLKNKETH-PHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 VSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 388 FGTKGLAISFVTTDQDKEVLKAIEKRFEVALPEFPKEGIDASTYM 432
>gi|225320657|dbj|BAH29724.1| DEAD box ATP-dependent RNA helicase [Dicyema japonicum]
Length = 423
Score = 425 bits (1093), Expect = e-116, Method: Compositional matrix adjust.
Identities = 222/458 (48%), Positives = 291/458 (63%), Gaps = 83/458 (18%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
+ ++ DLLDY++EEN + A D+ ++ KG++V+IHSSGFRDFLLKPE+LR I
Sbjct: 3 LYNDTDLLDYDEEENDSVLPTKQANDS----QKPKGSHVAIHSSGFRDFLLKPELLRTIQ 58
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
+C F +++ I +A+L MDI+CQA
Sbjct: 59 ECG--------FEHPSEVQHQCI------------------------PQAILNMDIVCQA 86
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAV+VL+TL QL+ +NV LV+CHTRELAFQISKEYERFSKY+ +KV V F
Sbjct: 87 KSGMGKTAVYVLSTLHQLDENCTNVDTLVLCHTRELAFQISKEYERFSKYLPEVKVAVCF 146
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+P+Q D L+ NPQ+VVGTPGRIL LV LNLS HF++DECDK+L++ +MR
Sbjct: 147 GGIPMQLDISKLRK-NPQVVVGTPGRILQLVSENHLNLSKCHHFVVDECDKVLDKADMRS 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQ+IFR +PH+KQV+MFSATL K IRPVC KFM DP+E+Y+DDE+KLTLHGLQQ+Y K+
Sbjct: 206 DVQDIFRKTPHSKQVIMFSATLPKSIRPVCLKFMKDPLEIYIDDESKLTLHGLQQYYAKI 265
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
EN K + L LL+ L NQ +IFV++V RCIAL+ +L++ NF + IHRGM QEERLK+
Sbjct: 266 DENAKTRALSNLLESLSVNQTIIFVRTVNRCIALTEVLAQANFEVICIHRGMQQEERLKR 325
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
YQ FKDF KG+A+T
Sbjct: 326 YQLFKDFEKRILVATDLFGRGMDIERVNVVFNYDMPDDADSFLHRVARAGRFGTKGIAVT 385
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
F S+ D +LN VQ RF+V+ISE+P++ID +Y E +
Sbjct: 386 FVSNSTDMGVLNEVQKRFEVNISEMPEKIDPVSYNERK 423
>gi|320036991|gb|EFW18929.1| ATP-dependent RNA helicase SUB2 [Coccidioides posadasii str.
Silveira]
Length = 443
Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/474 (47%), Positives = 293/474 (61%), Gaps = 97/474 (20%)
Query: 37 MADNDDLLDYEDEE----------------NTEQIVADGAGDALAKQKEVKGAYVSIHSS 80
M+ +DL+DY DEE V G + + KG+YV +HS+
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAAAAATAAAAANGAAVKKGDLTVSGARADKKGSYVGVHST 60
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFRDFLLKPE+LRAI DC F ++++V I
Sbjct: 61 GFRDFLLKPELLRAITDCG--------FEHPSEVQQVCI--------------------- 91
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 92 ---PTAILKVDVLCQAKSGLGKTAVFVLTTLNQLEPVPGECSILVMCHTRELAYQIKNEY 148
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLK 258
RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR KKL+L +K
Sbjct: 149 ARFSKYLPDVKTAVFYGGTPMQKDIEVLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIK 208
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
F+LDECDKML+Q++MRRDVQEIFRS+P KQVMMFSATLS+EIRP+CKKFM +P+EVYV
Sbjct: 209 AFVLDECDKMLDQIDMRRDVQEIFRSTPADKQVMMFSATLSQEIRPICKKFMRNPLEVYV 268
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DD+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E N
Sbjct: 269 DDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTLRANELDKLLRECN 328
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 FPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSY 388
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E+D K L +++ RF+V++ E P+ +D STY+
Sbjct: 389 LHRVGRAGRFGTKGLSISFVSSEDDMKTLKDIEKRFEVALPEYPEGGVDASTYM 442
>gi|164423323|ref|XP_964893.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
gi|157070045|gb|EAA35657.2| ATP-dependent RNA helicase [Neurospora crassa OR74A]
Length = 434
Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust.
Identities = 227/465 (48%), Positives = 294/465 (63%), Gaps = 89/465 (19%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAG---DALAKQKEV---KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY D+E A G +A+ + V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDDELNNDSAAPTNGKKAEAVPAGQTVDTKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQAMLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
K GVF+GG PIQKD E LK TH P I+VGTPGR+ ALVR+K L L ++ F+LDECDK
Sbjct: 149 KTGVFYGGTPIQKDAEVLKNKETH-PHIIVGTPGRLNALVRDKHLRLGSVRMFVLDECDK 207
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+C+KFM +P E YVD++ KLTLH
Sbjct: 208 MLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICRKFMQNPTEHYVDEDTKLTLH 267
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G
Sbjct: 268 GLQQYYIPLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSG 327
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
++QEER+++Y+EFK+F+
Sbjct: 328 VSQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGR 387
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 388 FGTKGLAISFVTTDQDKEVLKAIEKRFEVALPEFPKEGIDASTYM 432
>gi|255951046|ref|XP_002566290.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211593307|emb|CAP99688.1| Pc22g24000 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 442
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 228/473 (48%), Positives = 296/473 (62%), Gaps = 96/473 (20%)
Query: 37 MADNDDLLDYEDEENTEQIV-------------ADGAGD--ALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE AD GD + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQTTTAPATTAAPAATNGDADKQGDLTVTGGRPDKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
++L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 91 --PTSILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECQILVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG PIQKD E L K +P IVV TPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPIQKDVEILSNKETHPNIVVATPGRLNALVRDKKLSLRNVKA 208
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFMH+P+EVYVD
Sbjct: 209 FVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMHNPLEVYVD 268
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NF
Sbjct: 269 DDTKLTLHGLQQYYIKLDEKEKNRKLNELLDNLEFNQVIIFVKSTQRANELDKLLRECNF 328
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
P++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 PSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYL 388
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S+E+D K+L ++ RF+V++ E P+ +D +TY+
Sbjct: 389 HRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEAGVDSTTYM 441
>gi|397594911|gb|EJK56348.1| hypothetical protein THAOC_23784 [Thalassiosira oceanica]
Length = 412
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 226/426 (53%), Positives = 272/426 (63%), Gaps = 83/426 (19%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
+G YV IH+SGF+DF+LKPE LRA+VDC E + V + +P+
Sbjct: 17 RGHYVGIHASGFKDFILKPECLRAVVDCG--------------FEHPSEVQHECIPQ--- 59
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLV 185
AVLGMDI+CQAKSGMGKTAVFVLATL QL+ ++ V VLV
Sbjct: 60 ---------------AVLGMDIVCQAKSGMGKTAVFVLATLHQLDPNAFPAGENQVSVLV 104
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
+CHTRELAFQI+ EYERFSKY+ +K VF+GG+ I+ + + LK P IVVGTPGRIL
Sbjct: 105 LCHTRELAFQIAHEYERFSKYLPEVKTAVFYGGVAIKTNRDVLKNDCPHIVVGTPGRILG 164
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
L R K L L +KHF+LDECD+MLE L+MRRDVQEIFR +PH KQVMMFSATL KEIRPV
Sbjct: 165 LAREKTLKLDHIKHFVLDECDRMLEALDMRRDVQEIFRMTPHEKQVMMFSATLGKEIRPV 224
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVT 365
CKKF DPME+YVDD+ KLTLHGLQ +YVKL E EKN+KL +LLD LEFNQVVIFV V
Sbjct: 225 CKKFCQDPMEIYVDDDTKLTLHGLQLYYVKLAEAEKNRKLNDLLDALEFNQVVIFVSKVA 284
Query: 366 RCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------------- 404
R L+ LL+E NFP++ IH G QEER+ KY+ FK+F+
Sbjct: 285 RANELNRLLTECNFPSICIHAGQKQEERIAKYKSFKEFNARILVSTDLFGRGIDIERVNV 344
Query: 405 -------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KGLAI+F S E D +IL+ VQ RF+V+I ELPDEI
Sbjct: 345 VINYDFPDDSDQFLHRVGRAGRFGTKGLAISFISSEPDQEILDKVQSRFEVNIPELPDEI 404
Query: 440 DLSTYI 445
D S Y+
Sbjct: 405 DASAYM 410
>gi|119467294|ref|XP_001257453.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
NRRL 181]
gi|143586096|sp|A1DL85.1|SUB2_NEOFI RecName: Full=ATP-dependent RNA helicase sub2
gi|119405605|gb|EAW15556.1| ATP dependent RNA helicase (Sub2), putative [Neosartorya fischeri
NRRL 181]
Length = 441
Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust.
Identities = 232/472 (49%), Positives = 295/472 (62%), Gaps = 95/472 (20%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADGAGD------ALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE T A+GA D + + KG+YV IHS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPAANGAQDKKGDLTVSGGRPDKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDFLLK E+LRAI DC F ++++V I
Sbjct: 61 RDFLLKGELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR KKL+L +K F
Sbjct: 149 FSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAF 208
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM +P+EVYVDD
Sbjct: 209 VLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDD 268
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 269 DTKLTLHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFP 328
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 SIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLH 388
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 389 RVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 440
>gi|126135590|ref|XP_001384319.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
[Scheffersomyces stipitis CBS 6054]
gi|146325738|sp|A3LST5.1|SUB2_PICST RecName: Full=ATP-dependent RNA helicase SUB2
gi|126091517|gb|ABN66290.1| Suppressor of the cold-sensitive snRNP biogenesis mutant brr1-1
[Scheffersomyces stipitis CBS 6054]
Length = 433
Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust.
Identities = 223/458 (48%), Positives = 294/458 (64%), Gaps = 86/458 (18%)
Query: 41 DDLLDYEDEEN----TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
++LLDY D E T VA GA A K+ + KG+YV IH++GFRDFLLKPE+LRAI
Sbjct: 7 EELLDYSDSEEIAVPTTTEVA-GADSATDKEADKKGSYVGIHATGFRDFLLKPELLRAIG 65
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F ++++V I +++LG D+LCQA
Sbjct: 66 DCG--------FEHPSEVQQVCI------------------------PQSILGTDVLCQA 93
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K VF+
Sbjct: 94 KSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVFY 153
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG PI++D E LK+ + P IVV TPGR+ ALV K + LS +K F++DECDK+LE ++M
Sbjct: 154 GGTPIKRDIEKLKSKDTCPHIVVATPGRLHALVNEKAIRLSNVKSFVIDECDKVLESIDM 213
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+Y+
Sbjct: 214 RRDVQDIFRATPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYI 273
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEER+
Sbjct: 274 KLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCSCNFPSIAVHSGLPQEERI 333
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
++Y+ FK+F+ KGLA
Sbjct: 334 ERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLA 393
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
I+ + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 394 ISLVGSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431
>gi|38047587|gb|AAR09696.1| similar to Drosophila melanogaster Hel25E, partial [Drosophila
yakuba]
Length = 260
Score = 423 bits (1087), Expect = e-115, Method: Compositional matrix adjust.
Identities = 205/237 (86%), Positives = 219/237 (92%), Gaps = 1/237 (0%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN-VYVLVMCHTRELAFQISKEYERF 203
+AVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERF
Sbjct: 24 QAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERF 83
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
SKYM +KV VFFGG+ IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LKHF+LD
Sbjct: 84 SKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLD 143
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKMLEQL+MRRDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAK
Sbjct: 144 ECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAK 203
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
LTLHGLQQHYV LKENEKNKKLFELLDVLEFNQVVIFVKSV RC+ALS LL+EQNFP
Sbjct: 204 LTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFP 260
>gi|145247210|ref|XP_001395854.1| ATP-dependent RNA helicase sub2 [Aspergillus niger CBS 513.88]
gi|143586076|sp|A2R0B5.1|SUB2_ASPNC RecName: Full=ATP-dependent RNA helicase sub2
gi|134080586|emb|CAK41253.1| unnamed protein product [Aspergillus niger]
Length = 440
Score = 422 bits (1086), Expect = e-115, Method: Compositional matrix adjust.
Identities = 231/471 (49%), Positives = 297/471 (63%), Gaps = 94/471 (19%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADG---AGDAL--AKQKEVKGAYVSIHSSGFR 83
M+ +DL+DY DEE T ++G GD + + KG+YV IHS+GFR
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPASNGEAKKGDLTVSGGRPDKKGSYVGIHSTGFR 60
Query: 84 DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
DFLLK E+LRAI DC F ++++V I
Sbjct: 61 DFLLKEELLRAITDCG--------FEHPSEVQQVCI------------------------ 88
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY RF
Sbjct: 89 PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARF 148
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
SKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR+KKL+L +K F+
Sbjct: 149 SKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFV 208
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRPVCKKFM +P+EVYVDD+
Sbjct: 209 LDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDDD 268
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+
Sbjct: 269 TKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPS 328
Query: 382 VSIHRGMTQEERLKKYQEFKDFH------------------------------------- 404
+++H G++QEER+K+Y+EFK+F+
Sbjct: 329 IAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHR 388
Query: 405 ---------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E+D K+L +++ RF+V++ E P+ +D STY+
Sbjct: 389 VGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439
>gi|241953960|ref|XP_002419701.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
gi|223643042|emb|CAX41916.1| ATP-dependent RNA helicase, putative [Candida dubliniensis CD36]
Length = 433
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/457 (47%), Positives = 293/457 (64%), Gaps = 84/457 (18%)
Query: 41 DDLLDYEDEEN---TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD 97
++LLDY D E + A G G + K+ + KG+YV IH++GFRDFLLKPE+LRAI D
Sbjct: 7 EELLDYSDSEEIAVSTTTQASGEGQSNDKESDKKGSYVGIHATGFRDFLLKPELLRAIGD 66
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C F ++++V I +++LG D+LCQAK
Sbjct: 67 CG--------FEHPSEVQQVCI------------------------PQSILGTDVLCQAK 94
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K VF+G
Sbjct: 95 SGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYG 154
Query: 218 GLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
G PI++D E LK + P IVV TPGR+ ALV K + L+ +K F++DECDK+LE ++MR
Sbjct: 155 GTPIKRDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMR 214
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+Y+K
Sbjct: 215 RDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIK 274
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEER++
Sbjct: 275 LDEKEKNRKLSDLLDSLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIE 334
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+Y+ FK+F+ KGLA+
Sbjct: 335 RYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAV 394
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
+F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 395 SFVSSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431
>gi|169844510|ref|XP_001828976.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
gi|116510088|gb|EAU92983.1| ATP-dependent RNA helicase SUB2 [Coprinopsis cinerea okayama7#130]
Length = 432
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 232/458 (50%), Positives = 283/458 (61%), Gaps = 83/458 (18%)
Query: 39 DNDDLLDYEDEEN---TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
D +DL+DYEDE + + A A K + IHS+GFRDFLLKPE+LRAI
Sbjct: 5 DAEDLIDYEDEHDIVPSGGAAASAGAAGGAGDAGDKKNFSGIHSTGFRDFLLKPELLRAI 64
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
D + E + V +P+ AVLGMD+LCQ
Sbjct: 65 SD--------------LGFEHPSEVQQECIPQ------------------AVLGMDVLCQ 92
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM +++V F
Sbjct: 93 AKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIKNEYTRFAKYMPDVRVSTF 152
Query: 216 FGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
+GG P+ KD E L KT P IVV TPGR+ AL R+K L+ +KHF+LDECDKMLEQL+
Sbjct: 153 YGGTPVAKDAEILRDKTKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDECDKMLEQLD 212
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTLHGLQQHY
Sbjct: 213 MRRDVQEIFRMTPHHKQVMMFSATLAKEIRATCKKFMANPLEIFVDDETKLTLHGLQQHY 272
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKL+E KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP+++IH G+ QEER
Sbjct: 273 VKLEEAGKNRKLNELLDNLEFNQVVIFVKSVARAIELDKLLVSCNFPSIAIHSGLQQEER 332
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+K+Y FK F KGL
Sbjct: 333 IKRYTAFKAFEKRILVATDIFGRGIDVERVNIVVNYDCPPDADSYLHRVGRAGRFGTKGL 392
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
AITF S + D + + ++Q RF+V++ ELPD ID ++Y+
Sbjct: 393 AITFVSSDTDQQTMASIQSRFEVAVPELPDHIDPASYM 430
>gi|223634713|sp|A5DDN0.3|SUB2_PICGU RecName: Full=ATP-dependent RNA helicase SUB2
Length = 432
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 223/460 (48%), Positives = 291/460 (63%), Gaps = 91/460 (19%)
Query: 41 DDLLDYEDEE------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
++LLDY D E N + ADGA K + KG+YV IH++GFRDFLLKPE+LRA
Sbjct: 7 EELLDYSDSEEIAVPSNAPEAGADGAD----KDADKKGSYVGIHATGFRDFLLKPELLRA 62
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++V I +++LG D+LC
Sbjct: 63 IGDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 90
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K V
Sbjct: 91 QAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFSKYMPDVKTEV 150
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG+PI KD E LK + P IVV TPGR+ ALV K + L+ +K F++DECDK+LE +
Sbjct: 151 FYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLEAI 210
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+
Sbjct: 211 DMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQY 270
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL E EKN+KL +LLD LEFNQV+IFVKS +R L+ LL NFP++++H M QEE
Sbjct: 271 YLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTSRANELNKLLVASNFPSIAVHSAMPQEE 330
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+ +Y+ FK+F+ KG
Sbjct: 331 RIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKG 390
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
LAI+F + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 391 LAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 430
>gi|448103531|ref|XP_004200058.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
gi|359381480|emb|CCE81939.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
Length = 435
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 221/460 (48%), Positives = 294/460 (63%), Gaps = 88/460 (19%)
Query: 41 DDLLDYEDEE------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
++LLDY D E + ADG G A K+ + KG+YV IH++GFRDFLLKPE+LRA
Sbjct: 7 EELLDYSDSEEIAVPTTAQNASADGEG-ANEKEADKKGSYVGIHATGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++V I +++LG D+LC
Sbjct: 66 IGDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSG+GKTAVFVL+TLQQL+ + +V+CHTRELA+QI EY RFSKYM ++K V
Sbjct: 94 QAKSGLGKTAVFVLSTLQQLDPVPGEISTVVICHTRELAYQIRNEYARFSKYMPDVKTEV 153
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG PI +D E LK + P I+V TPGR+ ALV K + L+ +K F++DECDK+LE +
Sbjct: 154 FYGGTPIARDVEKLKNKDTCPHIIVATPGRLHALVTEKSIRLNNVKSFVIDECDKVLEAV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ+IFR++PH KQVMMFSATL+++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+
Sbjct: 214 DMRRDVQDIFRNTPHQKQVMMFSATLAQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQY 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEE
Sbjct: 274 YIKLDEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+++Y+ FK+F+ KG
Sbjct: 334 RIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
LAI+F S E D +ILN +Q RFDV I++ P+E +D STY+
Sbjct: 394 LAISFVSSEADEEILNKIQSRFDVKITDFPEEGVDPSTYM 433
>gi|322701372|gb|EFY93122.1| ATP-dependent RNA helicase [Metarhizium acridum CQMa 102]
Length = 434
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/464 (48%), Positives = 294/464 (63%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA +V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSHEEDLIDYSDEEIGANETAAAGSNGKKGELAASNDVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVFFGG PI+ D E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 149 KTGVFFGGTPIKTDMETLKNKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q +MR DVQ++FR++P KQVMMFSATL+ EI+P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQPDMRTDVQDVFRATPTQKQVMMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G+
Sbjct: 269 LQQYYIKLEEKEKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGV 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+K+Y+EFK+F
Sbjct: 329 SQEERIKRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 GTKGLAISFVSSDQDQEVLKEIEKRFEVALPEFPKEGVDASTYM 432
>gi|410929731|ref|XP_003978253.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Takifugu
rubripes]
Length = 425
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/433 (50%), Positives = 287/433 (66%), Gaps = 79/433 (18%)
Query: 59 GAGDA-LAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
GA ++ + KE++GA+ + H++GFRDFLLKPE+LRAIVDC E
Sbjct: 20 GAPESGTSSNKEIEGAFRAFHTAGFRDFLLKPELLRAIVDC--------------GFEHP 65
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 177
+ V + +P+ A+LGMDILC+A+SGMGKTAVFVLATLQQ++
Sbjct: 66 SKVQHECIPQ------------------AILGMDILCEAQSGMGKTAVFVLATLQQIKPV 107
Query: 178 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237
D V VLVMCHTRELAF+ISKEYERFSKYM +KV VFFGGL I+KD+ LK + P I+V
Sbjct: 108 DGQVSVLVMCHTRELAFKISKEYERFSKYMPTVKVSVFFGGLTIRKDKAVLKKNCPHIIV 167
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
G PGRI L+ + L+L +KHF+LDECDKMLEQL+MR DVQEIF+ +P KQVMMFSAT
Sbjct: 168 GNPGRIYTLILQRSLSLKNIKHFVLDECDKMLEQLDMRGDVQEIFQMTPDKKQVMMFSAT 227
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
LS+E+RPVC+ FM DP+E++ DD+ + +LHGL+Q+Y +LK +EK +KLF+LL+++ FNQV
Sbjct: 228 LSEEVRPVCRMFMRDPLELFADDDPQPSLHGLEQYYCRLKVHEKTRKLFDLLELMVFNQV 287
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD--------------- 402
IFVK+V C+ALS LL EQ FPA+++HR M QEERL ++++FK+
Sbjct: 288 AIFVKTVQHCVALSHLLVEQVFPAIAVHRDMAQEERLSRFEQFKNLQWQILVATNLFDQE 347
Query: 403 ---------------------FH----------KGLAITFASDENDAKILNNVQDRFDVS 431
FH K L ITF SDE+D ILN VQ RF+V+
Sbjct: 348 MDTEFINVVFNYDTPEDSDTYFHRVARARSFRTKVLVITFVSDEDDVMILNEVQQRFEVN 407
Query: 432 ISELPDEIDLSTY 444
I+ELP+EI++ Y
Sbjct: 408 IAELPEEINIWRY 420
>gi|345562936|gb|EGX45944.1| hypothetical protein AOL_s00112g133 [Arthrobotrys oligospora ATCC
24927]
Length = 443
Score = 422 bits (1085), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/468 (47%), Positives = 292/468 (62%), Gaps = 95/468 (20%)
Query: 41 DDLLDYEDEE-------NTEQIVADGAGDALAKQKEV-------KGAYVSIHSSGFRDFL 86
+DL+DY D+E TE G G+A + KG+YV IHS+GFRDFL
Sbjct: 6 EDLIDYSDDEIGNEANAPTEATGVTGNGEAQKNETTTSNQADNKKGSYVGIHSTGFRDFL 65
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+LRAIVDC F ++++V I +A
Sbjct: 66 LKPELLRAIVDCG--------FEHPSEVQQVCI------------------------PQA 93
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+LG D+LCQAKSG+GKTAVFVL TLQQL+ VLVMCHTRELA+QI EY RFSKY
Sbjct: 94 ILGTDVLCQAKSGLGKTAVFVLTTLQQLDPVAGETAVLVMCHTRELAYQIRNEYTRFSKY 153
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M +K VF+GG P+QKD E LK + P I+V TPGR+ ALVR+K L L +K F+LDE
Sbjct: 154 MPEVKCSVFYGGTPMQKDIEVLKNKDTHPHIIVATPGRLNALVRDKHLRLGSVKAFVLDE 213
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKML+Q++MRRDVQEIFR++P +KQVMMFSATLS++IRP+CKKFM P+E++VDDE KL
Sbjct: 214 CDKMLDQIDMRRDVQEIFRATPQSKQVMMFSATLSQDIRPICKKFMQSPLEIFVDDETKL 273
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL E NFP++++
Sbjct: 274 TLHGLQQYYIKLDEKEKNRKLNDLLDQLEFNQVIIFVKSTVRANELNKLLVECNFPSIAV 333
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G++QEER+K+Y FK+F+
Sbjct: 334 HSGISQEERIKRYTSFKEFNKRICVATDVFGRGIDIERINLAINYDLPADPDSYLHRVGR 393
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S + DA++L+ + +RF+V + + P+ ID S Y+
Sbjct: 394 AGRFGTKGLSISFVSSKEDAEVLDKIMERFEVQLEQFPEGGIDASRYM 441
>gi|169778873|ref|XP_001823901.1| ATP-dependent RNA helicase sub2 [Aspergillus oryzae RIB40]
gi|238499455|ref|XP_002380962.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
NRRL3357]
gi|91208172|sp|Q2U6P7.1|SUB2_ASPOR RecName: Full=ATP-dependent RNA helicase sub2
gi|83772640|dbj|BAE62768.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|220692715|gb|EED49061.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus flavus
NRRL3357]
Length = 441
Score = 422 bits (1084), Expect = e-115, Method: Compositional matrix adjust.
Identities = 229/472 (48%), Positives = 292/472 (61%), Gaps = 95/472 (20%)
Query: 37 MADNDDLLDYEDEE--------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE G + + KG+YV IHS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPAANGDAAKKGDLTVSGGRPDKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDFLLK E+LRAI DC F ++++V I
Sbjct: 61 RDFLLKGELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR+KKL+L +K F
Sbjct: 149 FSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAF 208
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRPVCKKFM +P+EVYVDD
Sbjct: 209 VLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVYVDD 268
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 269 DTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFP 328
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 SIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLH 388
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S+E D K+L +++ RF+V++ E P+ +D STY+
Sbjct: 389 RVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 440
>gi|392576759|gb|EIW69889.1| hypothetical protein TREMEDRAFT_73647 [Tremella mesenterica DSM
1558]
Length = 428
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/457 (48%), Positives = 287/457 (62%), Gaps = 85/457 (18%)
Query: 39 DNDDLLDYED--EENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
D ++L+DY++ EE VA G A + + KG+YV IHS+GFRDFLLKPE+LRAI
Sbjct: 5 DEEELVDYDEAAEETFAPPVAATNGKA---EGDKKGSYVGIHSTGFRDFLLKPELLRAIS 61
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D + E + V +P+ A+LG D+LCQA
Sbjct: 62 D--------------LGFEHPSEVQQECIPQ------------------AILGTDVLCQA 89
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLA LQQ+E D V ++++CHTRELA+QI E+ RFSK+M+ ++ VF+
Sbjct: 90 KSGMGKTAVFVLACLQQIEPVDGEVSIIILCHTRELAYQIRNEFARFSKFMTAVRTAVFY 149
Query: 217 GGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG PI D+E L K P IVVGTPGR++AL R+K L + +KHF+LDECDKML+QL+M
Sbjct: 150 GGTPISADQELLGNKEKCPHIVVGTPGRMMALTRDKTLKATHVKHFVLDECDKMLDQLDM 209
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIFR++PH KQVMMFSATLSKEIR CKKFM P+E+YVDDE KLTLHGLQQ+Y+
Sbjct: 210 RRDVQEIFRATPHHKQVMMFSATLSKEIRATCKKFMQSPLEIYVDDETKLTLHGLQQYYL 269
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E EKN+KL +LLD LEFNQV IFVKSV+R L LL E NFP++ IH + Q ER+
Sbjct: 270 KLEEREKNRKLNDLLDNLEFNQVCIFVKSVSRATQLDALLQECNFPSICIHSALPQPERI 329
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
++Q+FK F KGLA
Sbjct: 330 SRFQQFKAFEKRILVATDIFGRGIDVERVNVVINYDAPGDADSYLHRVGRAGRFGTKGLA 389
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
ITF + + D ++L +Q+RF V+I LP+ +D +TY+
Sbjct: 390 ITFVASDADQEVLQKIQERFTVAIPTLPETVDPATYM 426
>gi|384245739|gb|EIE19232.1| nuclear RNA helicase-like protein Bat1 [Coccomyxa subellipsoidea
C-169]
Length = 435
Score = 421 bits (1083), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/460 (49%), Positives = 286/460 (62%), Gaps = 92/460 (20%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+ D+L+DYE+++ E A G + LAK+ YV IHS+GF+DFLLKPE+LRAIVDC
Sbjct: 12 EEDELVDYEEDQPEEANQAKGT-ETLAKK-----GYVGIHSTGFKDFLLKPELLRAIVDC 65
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMD++CQAKS
Sbjct: 66 G--------------FEHPSEVQHECIPQ------------------AILGMDVICQAKS 93
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVL+ LQQLE ++ V L++CHTRELA+QI E+ERFS YM N++V FFGG
Sbjct: 94 GMGKTAVFVLSVLQQLEPVENEVAALIICHTRELAYQICHEFERFSTYMPNVRVANFFGG 153
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
PI++ E LKT+ P VVGTPGR+ L R+ LNL ++HFI+DECDK+LE ++MR DV
Sbjct: 154 FPIKQQIEQLKTNTPHAVVGTPGRLKQLSRSG-LNLKTIRHFIIDECDKVLENVDMRGDV 212
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
Q+IF+ +PH KQVMMFSATLS EIRP+ KKFM DPME+YVDDEAKLTLHGL QHY+ L E
Sbjct: 213 QDIFKQTPHDKQVMMFSATLSAEIRPIIKKFMSDPMEIYVDDEAKLTLHGLVQHYIMLNE 272
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
EKN+KL +LLD L+FNQVVIFVKSV R L+ LL E NFP++ IH QEERLK Y+
Sbjct: 273 EEKNRKLNDLLDALDFNQVVIFVKSVMRAKELNKLLVECNFPSICIHSAQKQEERLKVYK 332
Query: 399 EFKDFHK----------------------------------------------------- 405
FK+ K
Sbjct: 333 AFKEGQKRILVATDLVGRGIDIERVNIVINYDMPETDERHGNGADTYLHRVGRAGRFGTK 392
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAITF + E D+ +LN VQ+RFDV I LPD+ID STY+
Sbjct: 393 GLAITFVASEQDSAVLNQVQERFDVDIKPLPDQIDTSTYM 432
>gi|358371078|dbj|GAA87687.1| ATP dependent RNA helicase [Aspergillus kawachii IFO 4308]
Length = 440
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/471 (48%), Positives = 297/471 (63%), Gaps = 94/471 (19%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADG---AGDAL--AKQKEVKGAYVSIHSSGFR 83
M+ +DL+DY DEE T ++G GD + + KG+YV IHS+GFR
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPASNGEAKKGDLTVSGGRPDKKGSYVGIHSTGFR 60
Query: 84 DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
DFLLK E+LRAI DC F ++++V I
Sbjct: 61 DFLLKEELLRAITDCG--------FEHPSEVQQVCI------------------------ 88
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY RF
Sbjct: 89 PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARF 148
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
SKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR+KKL+L +K F+
Sbjct: 149 SKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFV 208
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS++IRPVCKKFM +P+EVYVDD+
Sbjct: 209 LDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQDIRPVCKKFMRNPLEVYVDDD 268
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+
Sbjct: 269 TKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLRECNFPS 328
Query: 382 VSIHRGMTQEERLKKYQEFKDFH------------------------------------- 404
+++H G++QEER+K+Y+EFK+F+
Sbjct: 329 IAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHR 388
Query: 405 ---------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E+D K+L +++ RF+V++ E P+ +D STY+
Sbjct: 389 VGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 439
>gi|322709683|gb|EFZ01259.1| ATP-dependent RNA helicase [Metarhizium anisopliae ARSEF 23]
Length = 434
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 224/464 (48%), Positives = 293/464 (63%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA +V KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSHEEDLIDYSDEEIGANETAAAGSNGKKGELAASTDVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVFFGG PI+ D E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 149 KTGVFFGGTPIKTDMETLKNKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q +MR DVQ++FR++P KQVMMFSATL+ EI+P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQPDMRTDVQDVFRATPTQKQVMMFSATLANEIKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G+
Sbjct: 269 LQQYYIKLEEKEKNRKLNELLDELQFNQVIIFVKSTIRATELDKLLRECNFPSIAVHSGV 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+K+Y+EFK+F
Sbjct: 329 SQEERIKRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLPADASSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D +L ++ RF+V++ E P E +D STY+
Sbjct: 389 GTKGLAISFVSSDQDQDVLKEIEKRFEVALPEFPKEGVDASTYM 432
>gi|328856884|gb|EGG06003.1| hypothetical protein MELLADRAFT_48571 [Melampsora larici-populina
98AG31]
Length = 434
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 217/459 (47%), Positives = 296/459 (64%), Gaps = 86/459 (18%)
Query: 41 DDLLDYEDEEN-----TEQIVADGAGDAL-AKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
+DL+DY++++ I + G A+ + K+ KG+YV IHS+GFRDFLLKPE+LRA
Sbjct: 6 EDLIDYDEDDAGLAPPVTSITSTTNGGAIPSNGKDQKGSYVGIHSTGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D + E + V +P+ A+LGMD+LC
Sbjct: 66 ISD--------------LGFEHPSEVQQECIPQ------------------AILGMDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSGMGKTAVFV ATLQQ++ D V +LV+CHTRELA+QI EY RFSKYM +++ V
Sbjct: 94 QAKSGMGKTAVFVTATLQQIDPKDGEVSMLVLCHTRELAYQIRNEYARFSKYMPDVRTAV 153
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
+GG+ I++D + LK + P I+VGTPGR+ ALVR+ L + ++ F+LDECDKMLE +
Sbjct: 154 VYGGVSIKQDADMLKAKDKCPHIIVGTPGRLNALVRDGLLKCNTVRTFVLDECDKMLESV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ++F ++PH+KQVMMFSATLSK+IRP+CKKFM +P+E+YVDDEAKLTLHGLQQH
Sbjct: 214 DMRRDVQQVFLATPHSKQVMMFSATLSKDIRPICKKFMQNPLEIYVDDEAKLTLHGLQQH 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
+VK++E KN+KL +LLD LEFNQV IFVKSV+R + L LL + NFP+++IH G+ QEE
Sbjct: 274 FVKIEEAAKNRKLNDLLDTLEFNQVCIFVKSVSRAVQLDQLLRDCNFPSIAIHSGLGQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+ +Y++FK F KG
Sbjct: 334 RIARYKQFKAFEKRILVATDIFGRGIDVERVNIVVNYDTPGEADSYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
LAITF + + D +L+ +Q RF+V+I+ELPD I+ S+Y+
Sbjct: 394 LAITFVASDGDQTVLDAIQSRFEVAITELPDHIEASSYM 432
>gi|149236910|ref|XP_001524332.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
YB-4239]
gi|152112304|sp|A5E3W5.1|SUB2_LODEL RecName: Full=ATP-dependent RNA helicase SUB2
gi|146451867|gb|EDK46123.1| ATP-dependent RNA helicase SUB2 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 433
Score = 421 bits (1082), Expect = e-115, Method: Compositional matrix adjust.
Identities = 219/459 (47%), Positives = 294/459 (64%), Gaps = 84/459 (18%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGD---ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
+ ++LLDY D E AG+ A K+ + KG+YV IH++GFRDFLLKPE+LRAI
Sbjct: 5 NQEELLDYSDSEEIAVPTTTQAGEGESANDKEADKKGSYVGIHATGFRDFLLKPELLRAI 64
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
DC F ++++V I +++LG D+LCQ
Sbjct: 65 GDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLCQ 92
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K VF
Sbjct: 93 AKSGLGKTAVFVLSTLQQLDPVAGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEVF 152
Query: 216 FGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
+GG P+++D E LK + P IVV TPGR+ ALV+ K + L+ +K F++DECDK+LE L+
Sbjct: 153 YGGTPVKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVLESLD 212
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+Y
Sbjct: 213 MRRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYY 272
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEER
Sbjct: 273 IKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEER 332
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+++Y+ FK+F+ KGL
Sbjct: 333 IERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGL 392
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
I+F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 393 GISFVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431
>gi|238881797|gb|EEQ45435.1| ATP-dependent RNA helicase SUB2 [Candida albicans WO-1]
Length = 433
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/457 (48%), Positives = 293/457 (64%), Gaps = 84/457 (18%)
Query: 41 DDLLDYED-EENTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPEILRAIVD 97
++LLDY D EE +G+A + KE KG+YV IH++GFRDFLLKPE+LRAI D
Sbjct: 7 EELLDYSDSEEIAVSTTTQASGEAQSNDKESDKKGSYVGIHATGFRDFLLKPELLRAIGD 66
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C F ++++V I +++LG D+LCQAK
Sbjct: 67 CG--------FEHPSEVQQVCI------------------------PQSILGTDVLCQAK 94
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K VF+G
Sbjct: 95 SGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTDVFYG 154
Query: 218 GLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
G PI++D E LK + P IVV TPGR+ ALV K + L+ +K F++DECDK+LE ++MR
Sbjct: 155 GTPIKRDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDECDKVLESIDMR 214
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+Y+K
Sbjct: 215 RDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYIK 274
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEER++
Sbjct: 275 LDEKEKNRKLSDLLDSLEFNQVIIFVKSTRRANELNKLLCACNFPSIAVHSGLPQEERIE 334
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+Y+ FK+F+ KGLA+
Sbjct: 335 RYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAV 394
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
+F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 395 SFVSSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 431
>gi|302698637|ref|XP_003038997.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
gi|300112694|gb|EFJ04095.1| hypothetical protein SCHCODRAFT_65145 [Schizophyllum commune H4-8]
Length = 437
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 230/465 (49%), Positives = 289/465 (62%), Gaps = 89/465 (19%)
Query: 38 ADNDDLLDYEDEENT---------EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
A++++L+DYEDE + A A + E K + IHS+GFRDFLLK
Sbjct: 3 AEHEELIDYEDENDVIPNGGAAAPATNGAAKAAAGAGEGGEEKPDFSGIHSTGFRDFLLK 62
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LR+I D F ++++ I +AVL
Sbjct: 63 PELLRSISDLG--------FEHPSEVQQECI------------------------PQAVL 90
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GMD+LCQAKSG GKTAVFVLATLQQLE D V V+V+CHTRELAFQI EY RF+KYM
Sbjct: 91 GMDVLCQAKSGHGKTAVFVLATLQQLEPVDGEVAVIVLCHTRELAFQIRNEYTRFAKYMP 150
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
I+V F+GG P+ KD E L+ N P I+V TPGR+ ALVR+K L+ +KHF+LDECD
Sbjct: 151 QIRVSTFYGGTPVSKDAEILRDKNACPHIIVATPGRLNALVRDKVLDAKHVKHFVLDECD 210
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KLTL
Sbjct: 211 KMLEQLDMRRDVQEIFRATPHHKQVMMFSATLAKEIRATCKKFMANPLEIFVDDETKLTL 270
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQHYVKL+E +KN+KL +LLD LEFNQVVIFVKSV R I L LL NFP++SIH
Sbjct: 271 HGLQQHYVKLEEAQKNRKLNDLLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSISIHS 330
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G+ QEER+ +YQ FK+F
Sbjct: 331 GLQQEERINRYQAFKNFEKRILVATDIFGRGIDVERVNIVINYDAPPDADSYLHRVGRAG 390
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + D +++ +Q RF+V++ ELPD I+ S+Y+
Sbjct: 391 RFGTKGLAITFVSSDADQQVMAAIQSRFEVAVPELPDFIEPSSYM 435
>gi|425771595|gb|EKV10033.1| ATP-dependent RNA helicase SUB2 [Penicillium digitatum Pd1]
gi|425777099|gb|EKV15289.1| ATP-dependent RNA helicase SUB2 [Penicillium digitatum PHI26]
Length = 442
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 227/473 (47%), Positives = 295/473 (62%), Gaps = 96/473 (20%)
Query: 37 MADNDDLLDYEDEENTEQIV-------------ADGAGD--ALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE AD GD + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQTTTAPTTTAAPATTNGDADKQGDLTVTGGRPDKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
++L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 91 --PTSILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECQILVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG PIQKD E L K +P IVV TPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPIQKDVEILSNKETHPNIVVATPGRLNALVRDKKLSLRNVKA 208
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM +P+EVYVD
Sbjct: 209 FVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVD 268
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NF
Sbjct: 269 DDTKLTLHGLQQYYIKLDEKEKNRKLNELLDNLEFNQVIIFVKSTQRANELDKLLRECNF 328
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
P++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 PSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYL 388
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S+E+D K+L ++ RF+V++ E P+ +D +TY+
Sbjct: 389 HRVGRAGRFGTKGLSISFVSNEDDEKVLKEIEKRFEVALPEYPEAGVDSTTYM 441
>gi|354547682|emb|CCE44417.1| hypothetical protein CPAR2_402180 [Candida parapsilosis]
Length = 434
Score = 421 bits (1081), Expect = e-115, Method: Compositional matrix adjust.
Identities = 222/460 (48%), Positives = 297/460 (64%), Gaps = 89/460 (19%)
Query: 41 DDLLDYEDEE-----NTEQIVADGAGDALA-KQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
++LLDY D E T Q A G G+A K+ + KG+YV IH++GFRDFLLKPE+LRA
Sbjct: 7 EELLDYSDSEEIAVPTTTQ--AGGEGEATNDKEADKKGSYVGIHATGFRDFLLKPELLRA 64
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++V I +++LG D+LC
Sbjct: 65 IGDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 92
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K V
Sbjct: 93 QAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIKNEYARFSKYMPDVKTEV 152
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG PI++D E LK + P IVV TPGR+ ALV++K + L+ +K F++DECDK+LE +
Sbjct: 153 FYGGTPIKRDIEKLKNKDTCPHIVVATPGRLHALVQDKAIRLNNVKSFVIDECDKVLEAI 212
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+
Sbjct: 213 DMRRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQY 272
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEE
Sbjct: 273 YIKLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGIPQEE 332
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+++Y+ FK+F+ KG
Sbjct: 333 RIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKG 392
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
L I+F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 393 LGISFVSSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 432
>gi|315053519|ref|XP_003176133.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
gi|311337979|gb|EFQ97181.1| ATP-dependent RNA helicase SUB2 [Arthroderma gypseum CBS 118893]
Length = 441
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 228/472 (48%), Positives = 291/472 (61%), Gaps = 95/472 (20%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGAGDALAKQ--------KEVKGAYVSIHSSGF 82
MA +DL+DY DEE GDA K + KG+YV IHS+GF
Sbjct: 1 MATEEDLIDYSDEELQTTDAAAVPAAPAANGDASKKGDLTVAGAGADKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDF LK E+LRAI DC F ++++V I
Sbjct: 61 RDFYLKAELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKYM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F
Sbjct: 149 FSKYMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVGTPGRLNALLRDKKLSLRNIKSF 208
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRPVCKKFM +P+EVYVDD
Sbjct: 209 VLDECDKMLDQKDMRADVQEIFRSTPSEKQVMMFSATLAQEIRPVCKKFMRNPLEVYVDD 268
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 269 DTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFP 328
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFKDF+
Sbjct: 329 SIAVHSGVSQEERIKRYREFKDFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLH 388
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 389 RVGRAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 440
>gi|255087672|ref|XP_002505759.1| predicted protein [Micromonas sp. RCC299]
gi|226521029|gb|ACO67017.1| predicted protein [Micromonas sp. RCC299]
Length = 426
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/435 (51%), Positives = 275/435 (63%), Gaps = 82/435 (18%)
Query: 58 DGAGDALAKQKE-VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
+GAG AK E VK YV IHS+GFRDFLLKPE+LRAIVDC E
Sbjct: 25 EGAG---AKSGEAVKKGYVGIHSTGFRDFLLKPELLRAIVDCG--------------FEH 67
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
+ V + +P+ A+LGMD++CQAKSGMGKTAVFVLA LQQLE
Sbjct: 68 PSEVQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLAVLQQLEP 109
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
V L++CHTRELA+QI E+ERFS Y+ + V V FGG+ I++ + LK P I+
Sbjct: 110 VPGEVGALILCHTRELAYQIKHEFERFSAYLPAVNVAVIFGGVNIKQQKAELKEKPPSII 169
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
V TPGR AL ++ ++L HFILDECDKMLEQL+MR DVQEIF+ +PH KQVMMFSA
Sbjct: 170 VATPGRCKALAKDGDISLKQCGHFILDECDKMLEQLDMRADVQEIFKMTPHDKQVMMFSA 229
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
TLSKEIRPV KKFM+DPME+YVDDE KLTLHGL QHY+KL E EKN+KL +LLD L FNQ
Sbjct: 230 TLSKEIRPVIKKFMNDPMEIYVDDETKLTLHGLVQHYIKLTEAEKNRKLNDLLDALMFNQ 289
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
VVIFVKSV RC L LL+E NFP+++IHRGM+QEERL +Y+ FK+ +
Sbjct: 290 VVIFVKSVQRCTYLDKLLTECNFPSIAIHRGMSQEERLARYKSFKEGNKRILVATDLVAR 349
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF S + D +L+ V RF+V
Sbjct: 350 GIDIERVNIVINYDMPDGADTYLHRVGRAGRFGTKGLAITFLSSDEDTAVLDAVHARFEV 409
Query: 431 SISELPDEIDLSTYI 445
I ELP++ID STY+
Sbjct: 410 EIKELPEQIDTSTYM 424
>gi|448099687|ref|XP_004199205.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
gi|359380627|emb|CCE82868.1| Piso0_002620 [Millerozyma farinosa CBS 7064]
Length = 435
Score = 420 bits (1080), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/460 (47%), Positives = 294/460 (63%), Gaps = 88/460 (19%)
Query: 41 DDLLDYEDEE------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
++LLDY D E + ADG G A K+ + KG+YV IH++GFRDFLLKPE+LRA
Sbjct: 7 EELLDYSDSEEIAVPTTAQNASADGEG-ANDKEADKKGSYVGIHATGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++V I +++LG D+LC
Sbjct: 66 IGDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSG+GKTAVFVL+TLQQL+ + +V+CHTRELA+QI EY RFSKYM ++K V
Sbjct: 94 QAKSGLGKTAVFVLSTLQQLDPVPGEISTVVICHTRELAYQIRNEYARFSKYMPDVKTEV 153
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG PI +D E LK + P I+V TPGR+ ALV K + L+ +K F++DECDK+LE +
Sbjct: 154 FYGGTPIARDVEKLKNKDTCPHIIVATPGRLHALVTEKSIRLNNVKSFVIDECDKVLEAV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ+IFR++PH KQVMMFSATL+++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+
Sbjct: 214 DMRRDVQDIFRNTPHQKQVMMFSATLAQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQY 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL E +KN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEE
Sbjct: 274 YIKLDEKDKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGLPQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+++Y+ FK+F+ KG
Sbjct: 334 RIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
LAI+F S E D +ILN +Q RFDV I++ P+E +D STY+
Sbjct: 394 LAISFVSSEADEEILNKIQSRFDVKITDFPEEGVDPSTYM 433
>gi|429853298|gb|ELA28379.1| ATP-dependent RNA helicase [Colletotrichum gloeosporioides Nara
gc5]
Length = 434
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 226/464 (48%), Positives = 292/464 (62%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGAGDALAKQK-----EVKGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T + A G + KG+YV IHS+GFRDFLLKPE
Sbjct: 1 MSAEEDLIDYSDEELQTNETAAASNGKKADAAAAGNNVDKKGSYVGIHSTGFRDFLLKPE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRELAFQI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVF+GG PIQKD E +K P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 149 KTGVFYGGTPIQKDVETIKNKETCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q++MRRDVQEIFR++P KQVMMFSATLS +I+P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQIDMRRDVQEIFRATPTQKQVMMFSATLSDDIKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G+
Sbjct: 269 LQQYYIKLEEREKNRKLNELLDELQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGV 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+++Y+EFK+F+
Sbjct: 329 SQEERIRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E ID STY+
Sbjct: 389 GTKGLAISFVSTDQDKEVLTAIEKRFEVALPEFPKEGIDASTYM 432
>gi|448529866|ref|XP_003869942.1| Sub2 TREX complex component [Candida orthopsilosis Co 90-125]
gi|380354296|emb|CCG23810.1| Sub2 TREX complex component [Candida orthopsilosis]
Length = 434
Score = 420 bits (1079), Expect = e-115, Method: Compositional matrix adjust.
Identities = 220/458 (48%), Positives = 295/458 (64%), Gaps = 85/458 (18%)
Query: 41 DDLLDYED-EENTEQIVADGAGDALA---KQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
++LLDY D EE GD+ A K+ + KG+YV IH++GFRDFLLKPE+LRAI
Sbjct: 7 EELLDYSDSEEIAVPTTTQTGGDSEATNDKEADKKGSYVGIHATGFRDFLLKPELLRAIG 66
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F ++++V I +++LG D+LCQA
Sbjct: 67 DCG--------FEHPSEVQQVCI------------------------PQSILGTDVLCQA 94
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K VF+
Sbjct: 95 KSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIKNEYARFSKYMPDVKTEVFY 154
Query: 217 GGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG PI++D E LK + P IVV TPGR+ ALV++K + L+ +K F++DECDK+LE ++M
Sbjct: 155 GGTPIKRDIEKLKNKDTCPHIVVATPGRLHALVQDKAIRLNNVKSFVIDECDKVLEAIDM 214
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+Y+
Sbjct: 215 RRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQYYI 274
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++H G+ QEER+
Sbjct: 275 KLEEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAVHSGIPQEERI 334
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
++Y+ FK+F+ KGL
Sbjct: 335 ERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLG 394
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
I+F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 395 ISFVSSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 432
>gi|393218766|gb|EJD04254.1| ATP-dependent RNA helicase SUB2 [Fomitiporia mediterranea MF3/22]
Length = 433
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 228/461 (49%), Positives = 289/461 (62%), Gaps = 89/461 (19%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKG------AYVSIHSSGFRDFLLKPEIL 92
+ ++L+DYEDE++ ++A+GA G + IHS+GFRDFLLKPE+L
Sbjct: 6 NTEELIDYEDEQD---VIANGAAAVSNGAAAGDGDDKEKKNFSGIHSTGFRDFLLKPELL 62
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI D + E + V +P+ AVLGMD+
Sbjct: 63 RAISD--------------LGFEHPSEVQQECIPQ------------------AVLGMDV 90
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
LCQAKSG GKTAVFVLATLQQLE + V VLV+CHTRELAFQI EY RF+KYM ++++
Sbjct: 91 LCQAKSGHGKTAVFVLATLQQLEPVNGEVSVLVLCHTRELAFQIRNEYNRFAKYMPDVRI 150
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
F+GG P+QKD E LK + P IVV TPGR+ AL R+K L + +KHF+LDECDKMLE
Sbjct: 151 ATFYGGTPVQKDAEILKDKSKCPHIVVATPGRLNALARDKILLPTHVKHFVLDECDKMLE 210
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATL+K+IR CKKFM +P+E++VDDE KLTLHGLQ
Sbjct: 211 QLDMRRDVQEIFRVTPHHKQVMMFSATLAKDIRVTCKKFMANPLEIFVDDETKLTLHGLQ 270
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
QHYVKL+E +KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP++SIH G+ Q
Sbjct: 271 QHYVKLEEAQKNRKLNELLDSLEFNQVVIFVKSVARAIELDKLLQSCNFPSISIHSGLAQ 330
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EER+ +Y FK F
Sbjct: 331 EERINRYTAFKAFEKRILVATDIFGRGIDVERVNIVINYDCPPDADSYLHRVGRAGRFGT 390
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + E D +++ +Q RF+V++ ELP++ID ++Y+
Sbjct: 391 KGLAITFVASEADQTVMSQIQARFEVAVPELPEKIDSASYM 431
>gi|358384845|gb|EHK22442.1| hypothetical protein TRIVIDRAFT_84043 [Trichoderma virens Gv29-8]
Length = 433
Score = 419 bits (1078), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/463 (48%), Positives = 295/463 (63%), Gaps = 86/463 (18%)
Query: 37 MADNDDLLDYEDEE---NTEQIVADGA-GDALAKQK-EVKGAYVSIHSSGFRDFLLKPEI 91
M+ +DL+DY DEE N ++G G+A A + KG+YV IHS+GFRDFLLKPE+
Sbjct: 1 MSHEEDLIDYSDEEIGANEAAAPSNGKKGEAAAGNNVDKKGSYVGIHSTGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI DC F ++++ I +A+LG D
Sbjct: 61 LRAIGDCG--------FEHPSEVQQTCI------------------------PQALLGGD 88
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
I+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +IK
Sbjct: 89 IICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDIK 148
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
GVF+GG PI+ D E LK+ + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML
Sbjct: 149 TGVFYGGTPIKNDVETLKSKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKML 208
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+Q +MR DVQ++FR++P KQVMMFSATLS I+P+C+KFM +P E YVD++ KLTLHGL
Sbjct: 209 DQPDMRTDVQDVFRATPQQKQVMMFSATLSDAIKPICRKFMQNPTEHYVDEDTKLTLHGL 268
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++
Sbjct: 269 QQYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGVS 328
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+++Y+EFK+F
Sbjct: 329 QEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRFG 388
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S E D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 TKGLAISFVSSEQDQEVLKEIEKRFEVALPEFPKEGVDASTYM 431
>gi|294658297|ref|XP_460627.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
gi|91208173|sp|Q6BME5.2|SUB2_DEBHA RecName: Full=ATP-dependent RNA helicase SUB2
gi|202953024|emb|CAG88955.2| DEHA2F06138p [Debaryomyces hansenii CBS767]
Length = 435
Score = 419 bits (1077), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/460 (47%), Positives = 292/460 (63%), Gaps = 88/460 (19%)
Query: 41 DDLLDYEDEE------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
++LLDY D E T A G G A K+ + KG+YV IH++GFRDFLLKPE+LRA
Sbjct: 7 EELLDYSDSEEIAVPTTTAPSAAAGEG-ANDKEADKKGSYVGIHATGFRDFLLKPELLRA 65
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++V I +++LG D+LC
Sbjct: 66 IGDCG--------FEHPSEVQQVCI------------------------PQSILGTDVLC 93
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
QAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K V
Sbjct: 94 QAKSGLGKTAVFVLSTLQQLDPVPGEISTLVICHTRELAYQIRNEYARFSKYMPDVKTEV 153
Query: 215 FFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
F+GG PI +D E LK + P IVV TPGR+ ALV K + L+ +K F++DECDK+LE +
Sbjct: 154 FYGGTPITRDLEKLKNKDTCPHIVVATPGRLHALVTEKSIRLNNIKSFVIDECDKVLEAV 213
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEAKLTLHGLQQ+
Sbjct: 214 DMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGLQQY 273
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL E EKN+KL +LLD LEFNQV+IFV+S R L+ LL NFP++++H G+ QEE
Sbjct: 274 YIKLDEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANELNKLLCSSNFPSIAVHSGLPQEE 333
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+++Y+ FK+F+ KG
Sbjct: 334 RIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKG 393
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
LA++ S ++D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 394 LAVSLVSTKDDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 433
>gi|226528292|ref|NP_001149406.1| spliceosome RNA helicase BAT1 [Zea mays]
gi|195627032|gb|ACG35346.1| spliceosome RNA helicase BAT1 [Zea mays]
Length = 399
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/390 (56%), Positives = 274/390 (70%), Gaps = 39/390 (10%)
Query: 61 GDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
G A EV K YV IHSSGFRDFLLKPE+LRAI DC E +
Sbjct: 27 GSAAKPTGEVAKKGYVGIHSSGFRDFLLKPELLRAIQDCG--------------FEHPSE 72
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
V + +P+ A+LGMD++CQAKSGMGKTAVFVL++LQQ++
Sbjct: 73 VQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSSLQQIDPVAG 114
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
V LV+CHTRELA+QI E+ERFSKY++ +KV VF+GG+ I+K ++ LK P IVVGT
Sbjct: 115 QVAALVLCHTRELAYQICHEFERFSKYLTEVKVAVFYGGVHIRKHKDLLKNECPHIVVGT 174
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL R+K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLS
Sbjct: 175 PGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLS 234
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVI
Sbjct: 235 KEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSEAEKNRKLNDLLDALDFNQVVI 294
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAK 419
FVKSV+R L+ LL E NFP++ IH GMTQEERL +Y+ FK+ HK I A+D
Sbjct: 295 FVKSVSRAAELNKLLCECNFPSICIHSGMTQEERLTRYKNFKEGHK--KILVATDLVGRG 352
Query: 420 ILNNVQDRFDVSIS-ELPDEIDLSTYIEGR 448
I +++ R ++ I+ ++PD D + GR
Sbjct: 353 I--DIE-RVNIVINYDMPDSADTYLHRVGR 379
Score = 86.3 bits (212), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+ILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 341 KILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 388
>gi|242809318|ref|XP_002485344.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
gi|218715969|gb|EED15391.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
Length = 444
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 227/475 (47%), Positives = 293/475 (61%), Gaps = 98/475 (20%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADGAGDALAKQKEV---------KGAYVSIHS 79
MA +DL+DY DEE G G A K+ ++ KG+YV IHS
Sbjct: 1 MATEEDLIDYSDEELQTTEPAAVAPAATEAGNGAAATKKGDLTVSGGRPDKKGSYVGIHS 60
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
+GFRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 TGFRDFLLKTELLRAITDCG--------FEHPSEVQQVCI-------------------- 92
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ +L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRELA+QI E
Sbjct: 93 ----PQGMLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRELAYQIKNE 148
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLL 257
Y RFSKY+ +K VF+GG P+QKD E L K P IVVGTPGR+ ALVR+KKL+L +
Sbjct: 149 YARFSKYLPQVKTAVFYGGTPMQKDIEILSNKETRPNIVVGTPGRLNALVRDKKLSLRNV 208
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVY
Sbjct: 209 KAFVLDECDKMLDQIDMRRDVQEIFRNTPAEKQVMMFSATLSQEVRPICKKFMRNPLEVY 268
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDD+ KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L LL E
Sbjct: 269 VDDDTKLTLHGLQQYYIKLSEQEKNRKLSDLLDNLEFNQVIIFVKSTLRANELDKLLREC 328
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 NFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPGDADS 388
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 389 YLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDASTYM 443
>gi|344300348|gb|EGW30669.1| hypothetical protein SPAPADRAFT_62538 [Spathaspora passalidarum
NRRL Y-27907]
Length = 439
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/463 (47%), Positives = 293/463 (63%), Gaps = 90/463 (19%)
Query: 41 DDLLDYEDEE-----NTEQIVA--DGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPEI 91
++LLDY D E T A D + A KE KG+YV IH++GFRDFLLKPE+
Sbjct: 7 EELLDYSDSEEIAVPTTSATTAGNDAGAEGAANDKEADKKGSYVGIHATGFRDFLLKPEL 66
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI DC F ++++V I +++LG D
Sbjct: 67 LRAIGDCG--------FEHPSEVQQVCI------------------------PQSILGTD 94
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFSKYM ++K
Sbjct: 95 VLCQAKSGLGKTAVFVLSTLQQLDPIPGEISTLVICHTRELAYQIRNEYARFSKYMPDVK 154
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
VF+GG PI++D E LK + P IVV TPGR+ ALV+ K + L+ +K F++DECDK+L
Sbjct: 155 TEVFYGGTPIKRDIEKLKNKDTCPHIVVATPGRLHALVQEKAIRLNNVKSFVIDECDKVL 214
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E ++MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEAKLTLHGL
Sbjct: 215 EAIDMRRDVQDIFRATPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKLTLHGL 274
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL +LLD LEFNQV+IFV+S R L+ LL NFP++++H G+
Sbjct: 275 QQYYIKLEEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANELNKLLCACNFPSIAVHSGLP 334
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+++Y+ FK+F+
Sbjct: 335 QEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFG 394
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+ S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 395 TKGLAISLVSTKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 437
>gi|340521389|gb|EGR51623.1| predicted protein [Trichoderma reesei QM6a]
Length = 433
Score = 418 bits (1074), Expect = e-114, Method: Compositional matrix adjust.
Identities = 224/464 (48%), Positives = 294/464 (63%), Gaps = 88/464 (18%)
Query: 37 MADNDDLLDYEDEE---NTEQIVADGA-GDALAKQK-EVKGAYVSIHSSGFRDFLLKPEI 91
M+ +DL+DY DEE N ++G G+ A + KG+YV IHS+GFRDFLLKPE+
Sbjct: 1 MSHEEDLIDYSDEEIGANETAAASNGKKGETTAATNVDKKGSYVGIHSTGFRDFLLKPEL 60
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP-EDSDTYLHRVARAGRFGTKAVLGM 150
LRAI DC ++ P E S T + +A+LG
Sbjct: 61 LRAIGDC-----------------------GFEHPSEASQTCI----------PQALLGG 87
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +I
Sbjct: 88 DIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDI 147
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVF+GG PI+ D E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 148 KTGVFYGGTPIKNDVETLKNKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKM 207
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q +MR DVQ++FR++P KQVMMFSATLS I+P+C+KFM +P E YVD++ KLTLHG
Sbjct: 208 LDQPDMRTDVQDVFRATPQQKQVMMFSATLSDAIKPICRKFMQNPTEHYVDEDTKLTLHG 267
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G+
Sbjct: 268 LQQYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTVRATELDKLLRECNFPSIAVHSGV 327
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+++Y+EFK+F
Sbjct: 328 SQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLPGDANSYLHRVGRAGRF 387
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S E D ++L ++ RF+V++ E P E +D STY+
Sbjct: 388 GTKGLAISFVSTEQDQEVLKEIEKRFEVALPEFPKEGVDASTYM 431
>gi|327309270|ref|XP_003239326.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
gi|326459582|gb|EGD85035.1| ATP-dependent RNA helicase SUB2 [Trichophyton rubrum CBS 118892]
Length = 441
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 291/472 (61%), Gaps = 95/472 (20%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGAGDALAKQ--------KEVKGAYVSIHSSGF 82
MA +DL+DY DEE GDA K + KG+YV IHS+GF
Sbjct: 1 MATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTVGGAGADKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDF LK E+LRAI DC F ++++V I
Sbjct: 61 RDFYLKAELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKYM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F
Sbjct: 149 FSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVGTPGRLNALLRDKKLSLRNIKSF 208
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRP+CKKFM +P+EVYVDD
Sbjct: 209 VLDECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRNPLEVYVDD 268
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 269 DTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFP 328
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 SIAVHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLH 388
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 389 RVGRAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 440
>gi|408388400|gb|EKJ68085.1| hypothetical protein FPSE_11685 [Fusarium pseudograminearum CS3096]
Length = 434
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/464 (47%), Positives = 292/464 (62%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA V KG+YV IHS+GFRDFLLK E
Sbjct: 1 MSHEEDLIDYSDEEIGGNETAATASNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQALLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVF+GG PI+ D E LK P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 149 KTGVFYGGTPIKTDVETLKNKETCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q +MR DVQ++FR++P KQVMMFSATLS+E++P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQPDMRTDVQDVFRATPQQKQVMMFSATLSEEVKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFV+S R L LL E NFP++++H G+
Sbjct: 269 LQQYYIKLEEKEKNRKLNELLDDLQFNQVIIFVRSTVRATELDKLLRECNFPSIAVHSGV 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+++Y+EFK+F
Sbjct: 329 SQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 GTKGLAISFVSTDQDQEVLKEIEKRFEVALPEFPKEGVDASTYM 432
>gi|154277506|ref|XP_001539594.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus NAm1]
gi|150413179|gb|EDN08562.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus NAm1]
Length = 484
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 225/483 (46%), Positives = 296/483 (61%), Gaps = 74/483 (15%)
Query: 37 MADNDDLLDYEDEE-------------NTEQIVADGAGDAL--AKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE GD + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQATDAAAGTAAAGANGAAPKKEGDLTVSGARADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCW------RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
FRDFLLK E+LRAI DC ++ + G +R + + YL
Sbjct: 61 FRDFLLKGELLRAITDCGFEHPSEGFFMSVSALGTAARRKRGYSINGWQYSAAWHNYLSI 120
Query: 136 VARAGRFG----TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191
G+ A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRE
Sbjct: 121 SVIFGKGNQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRE 180
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRN 249
LA+QI EY RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR+
Sbjct: 181 LAYQIKNEYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRD 240
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
KKL+L +K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKF
Sbjct: 241 KKLSLRNIKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKF 300
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
M +P+EVYVDD+ KLTLHGL Q+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R
Sbjct: 301 MRNPLEVYVDDDTKLTLHGLLQYYIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASE 360
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------- 404
L LL E NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 361 LDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINY 420
Query: 405 ---------------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLS 442
KGLAI+F S E D ++L +++ RF+V++ E P +D S
Sbjct: 421 DLPADADSYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSS 480
Query: 443 TYI 445
Y+
Sbjct: 481 AYM 483
>gi|302918633|ref|XP_003052696.1| predicted protein [Nectria haematococca mpVI 77-13-4]
gi|256733636|gb|EEU46983.1| predicted protein [Nectria haematococca mpVI 77-13-4]
Length = 434
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/464 (47%), Positives = 292/464 (62%), Gaps = 87/464 (18%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA V KG+YV IHS+GFRDFLLK E
Sbjct: 1 MSHEEDLIDYSDEEIGGNETAATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI DC F ++++ I +A+LG
Sbjct: 61 LLRAIADCG--------FEHPSEVQQTCI------------------------PQALLGG 88
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM +I
Sbjct: 89 DIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMPDI 148
Query: 211 KVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K GVF+GG PI+ D E LK P I+VGTPGR+ ALVR+K L L ++ F+LDECDKM
Sbjct: 149 KTGVFYGGTPIKTDVETLKNKETCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECDKM 208
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+Q +MR DVQ++FR++P KQVMMFSATLS+E++P+C+KFM +P E YVD++ KLTLHG
Sbjct: 209 LDQPDMRTDVQDVFRATPQQKQVMMFSATLSEEVKPICRKFMQNPTEHYVDEDTKLTLHG 268
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFV+S R L LL E NFP++++H G+
Sbjct: 269 LQQYYIKLEEKEKNRKLNELLDDLQFNQVIIFVRSTVRATELDKLLRECNFPSIAVHSGV 328
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEER+++Y+EFK+F
Sbjct: 329 SQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRF 388
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 GTKGLAISFVSTDQDQEVLKEIEKRFEVALPEFPKEGVDASTYM 432
>gi|225683798|gb|EEH22082.1| ATP-dependent RNA helicase sub2 [Paracoccidioides brasiliensis
Pb03]
gi|226293173|gb|EEH48593.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides brasiliensis
Pb18]
Length = 457
Score = 417 bits (1073), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/460 (48%), Positives = 289/460 (62%), Gaps = 96/460 (20%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGA-GDALAKQKEV---------KGAYVSIHSS 80
M+ +DL+DY DEE I G G AL K+ ++ KG+YV IHS+
Sbjct: 1 MSHEEDLIDYSDEELQATDAAATSIAPTGTNGAALKKEGDLTVSGVRADKKGSYVGIHST 60
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 GFRDFLLKGELLRAITDCG--------FEHPSEVQQVCI--------------------- 91
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 92 ---PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEY 148
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
RFSKY+ ++K VF+GG P+QKD E L K + P IVVGTPGR+ ALVR+KKL+L +K
Sbjct: 149 ARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDNYPNIVVGTPGRLNALVRDKKLSLRSIK 208
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVYV
Sbjct: 209 AFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVYV 268
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DD+ KLTLHGL Q+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E N
Sbjct: 269 DDDTKLTLHGLLQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTQRATELDKLLRECN 328
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 FPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSY 388
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSI 432
KGLAI+F S E D ++L +++ RF+V++
Sbjct: 389 LHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVAL 428
>gi|50293331|ref|XP_449077.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690687|sp|Q6FL17.1|SUB2_CANGA RecName: Full=ATP-dependent RNA helicase SUB2
gi|49528390|emb|CAG62047.1| unnamed protein product [Candida glabrata]
Length = 439
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/463 (47%), Positives = 299/463 (64%), Gaps = 90/463 (19%)
Query: 41 DDLLDYEDEENTEQI-----VADGAGDALAKQK----EVKGAYVSIHSSGFRDFLLKPEI 91
+DLL+Y D E Q+ +G + A Q+ + KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQEIQVDNKETAVEGTTENEATQENGEADKKGSYVGIHSTGFKDFLLKPEL 66
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
RAI+DC ++ P S+ H + +++ G D
Sbjct: 67 SRAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTD 94
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM +++
Sbjct: 95 VLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVR 154
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
VF+GG PI KD E LK + P IVV TPGR+ ALVR+K ++LS +K+F++DECDK+L
Sbjct: 155 TAVFYGGTPIAKDAELLKNKDTAPHIVVATPGRLKALVRDKMIDLSHVKNFVIDECDKVL 214
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTLHGL
Sbjct: 215 EELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGL 274
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS +R L+ LL+ NFPA+++H M
Sbjct: 275 QQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTSRANELTKLLNASNFPAITVHGHMK 334
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+ +Y+ FKDF
Sbjct: 335 QEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLLNEADQYLHRVGRAGRFG 394
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S++ D ++L+ +Q+RFDV I+E P+E ID STY+
Sbjct: 395 TKGLAISFVSNKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 437
>gi|255720512|ref|XP_002556536.1| KLTH0H15686p [Lachancea thermotolerans]
gi|238942502|emb|CAR30674.1| KLTH0H15686p [Lachancea thermotolerans CBS 6340]
Length = 439
Score = 417 bits (1072), Expect = e-114, Method: Compositional matrix adjust.
Identities = 218/463 (47%), Positives = 294/463 (63%), Gaps = 90/463 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEV---------KGAYVSIHSSGFRDFLLKPEI 91
+DLL+Y D E Q+ A A +A A K+ KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQEIQVEASKAAEAGADTKDSGETTGEADKKGSYVGIHSTGFKDFLLKPEL 66
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
RAI+DC ++ P S+ H + +++ G D
Sbjct: 67 SRAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTD 94
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM ++K
Sbjct: 95 VLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPDVK 154
Query: 212 VGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
VF+GG PI KD E LK P IVV TPGR+ ALVR+K ++LS +K+F++DECDK+L
Sbjct: 155 TAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKIIDLSSVKNFVIDECDKVL 214
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E+L MR+DVQ+IFR++P KQVMMFSATLS+E+RP+C++F+ +P+E++VDDEAKLTLHGL
Sbjct: 215 EELGMRKDVQDIFRATPRDKQVMMFSATLSQEMRPICRRFLQNPLEIFVDDEAKLTLHGL 274
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H GM
Sbjct: 275 QQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTNRANELTKLLNASNFPAITVHGGMK 334
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+ +Y+ FK+F
Sbjct: 335 QEERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFG 394
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + D +IL +QDRFDV ++E P+E +D STY+
Sbjct: 395 TKGLAISFVATSEDEEILAKIQDRFDVKVAEFPEEGVDPSTYL 437
>gi|406861567|gb|EKD14621.1| DEAD/DEAH box helicase [Marssonina brunnea f. sp. 'multigermtubi'
MB_m1]
Length = 436
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 223/470 (47%), Positives = 285/470 (60%), Gaps = 97/470 (20%)
Query: 37 MADNDDLLDYEDEE------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRD 84
MA +DL+DY DEE N GD K KG+YV IH++GFR+
Sbjct: 1 MATEEDLIDYSDEELGTNDAAPAAAANGGAKKGTATGDTTDK----KGSYVGIHATGFRE 56
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+LRAI DC F ++++V I
Sbjct: 57 FLLKPELLRAITDCG--------FEHPSEVQQVCI------------------------P 84
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LG D+LCQAKSG+GKTA+FVL +LQQ+E + VL+MCHTRELA+QI EY RFS
Sbjct: 85 QAILGTDVLCQAKSGLGKTAIFVLTSLQQIEPVNGETSVLIMCHTRELAYQIKNEYARFS 144
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PIQKD E LK + P I+V TPGR+ ALVR+K L L K F+L
Sbjct: 145 KYMPDVKTSVFYGGTPIQKDAEILKNKDTHPHIIVATPGRLNALVRDKFLRLGSCKIFVL 204
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+E+YVDDE
Sbjct: 205 DECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSQEVRPICKKFMQNPLEIYVDDEK 264
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
LTLHGL Q Y+KL E EKN+KL ELLD L+FNQ +IFVKS R L LL+E NFP+V
Sbjct: 265 TLTLHGLNQFYIKLDEKEKNRKLNELLDDLQFNQAIIFVKSTVRATELDKLLTECNFPSV 324
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H G++QEER+K+Y+ FKDF
Sbjct: 325 AVHSGVSQEERIKRYKAFKDFQERICVATDVFGRGIDIERINLAINYDLPADADSYLHRV 384
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S E D ++L +V+ RF+ + E P E ID S Y+
Sbjct: 385 GRAGRFGTKGLSISFVSSEADEEVLKSVEKRFEADVPEFPAEGIDSSIYM 434
>gi|156843532|ref|XP_001644833.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
70294]
gi|160358707|sp|A7TLA0.1|SUB21_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-1
gi|156115484|gb|EDO16975.1| hypothetical protein Kpol_1041p33 [Vanderwaltozyma polyspora DSM
70294]
Length = 441
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 221/465 (47%), Positives = 292/465 (62%), Gaps = 92/465 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAG-----------DALAKQKEVKGAYVSIHSSGFRDFLLKP 89
+DLL+Y D E Q+ A A DA E KG+YV IHS+GF+DFLLKP
Sbjct: 7 EDLLEYSDNEQDIQVDASKAAEPSELDATTAEDASNGDAEKKGSYVGIHSTGFKDFLLKP 66
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+ RAI+DC ++ P S+ H + +++ G
Sbjct: 67 ELARAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHG 94
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM +
Sbjct: 95 TDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPD 154
Query: 210 IKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
+K VF+GG PI KD E LK P IVV TPGR+ ALVR+K ++LS +K+F++DECDK
Sbjct: 155 VKTAVFYGGTPINKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECDK 214
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
+LE+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTLH
Sbjct: 215 VLEELDMRRDVQDIFRATPRDKQVMMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTLH 274
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+Y KL+ENEKN+KL +LLD LEFNQV+IFVKS R L+ LL+E NFPA+++H
Sbjct: 275 GLQQYYTKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHGH 334
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
M Q ER+ +Y+ FK+F
Sbjct: 335 MKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGR 394
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 FGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 439
>gi|365761668|gb|EHN03306.1| Sub2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401840144|gb|EJT43052.1| SUB2-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 446
Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust.
Identities = 222/470 (47%), Positives = 294/470 (62%), Gaps = 97/470 (20%)
Query: 41 DDLLDYEDEENTEQIVA----------------DGAGDALAKQKEVKGAYVSIHSSGFRD 84
+DLL+Y D E QI A DG + + KG+YV IHS+GF+D
Sbjct: 7 EDLLEYSDNEQEIQIDASKAVEVGETGAAASATDGDDNNNTAAGDKKGSYVGIHSTGFKD 66
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 FLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP------- 94
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS TR L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FKDF
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>gi|115386676|ref|XP_001209879.1| ATP-dependent RNA helicase SUB2 [Aspergillus terreus NIH2624]
gi|121736209|sp|Q0CGJ9.1|SUB2_ASPTN RecName: Full=ATP-dependent RNA helicase sub2
gi|114190877|gb|EAU32577.1| ATP-dependent RNA helicase SUB2 [Aspergillus terreus NIH2624]
Length = 438
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 226/472 (47%), Positives = 290/472 (61%), Gaps = 98/472 (20%)
Query: 37 MADNDDLLDYEDEE------------NTEQIVADGAGD--ALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE GD + + KG+YV IHS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPAANGAPAKTGDLTVTGGRSDKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDFLLK E+LRAI DC ++ P +
Sbjct: 61 RDFLLKGELLRAITDC-----------------------GFEHPSEVCI----------- 86
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY R
Sbjct: 87 -PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYAR 145
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR KKL+L +K F
Sbjct: 146 FSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAF 205
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM +P+EVYVDD
Sbjct: 206 VLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNPLEVYVDD 265
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E+EKN+KL +LLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 266 DTKLTLHGLQQYYIKLSESEKNRKLNDLLDNLEFNQVIIFVKSTQRANELDKLLRECNFP 325
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 326 SIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLH 385
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E+D K+L +++ RF+V++ E P+ +D STY+
Sbjct: 386 RVGRAGRFGTKGLSISFVSSEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 437
>gi|156844624|ref|XP_001645374.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
70294]
gi|160358708|sp|A7TJT7.1|SUB22_VANPO RecName: Full=ATP-dependent RNA helicase SUB2-2
gi|156116035|gb|EDO17516.1| hypothetical protein Kpol_1058p53 [Vanderwaltozyma polyspora DSM
70294]
Length = 442
Score = 416 bits (1070), Expect = e-114, Method: Compositional matrix adjust.
Identities = 220/466 (47%), Positives = 295/466 (63%), Gaps = 93/466 (19%)
Query: 41 DDLLDYEDEENTEQI----VADGAGDALAKQ--------KEVKGAYVSIHSSGFRDFLLK 88
+DLL+Y D E Q+ + + A DA + E KG+YV IHS+GF+DFLLK
Sbjct: 7 EDLLEYSDNEQEIQVDATNINESAVDATVSETAEGATTDSEKKGSYVGIHSTGFKDFLLK 66
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+ RAI+DC ++ P S+ H + +++
Sbjct: 67 PELARAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIH 94
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM
Sbjct: 95 GTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMP 154
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++K VF+GG PI KD E LK P IVV TPGR+ ALVR+K ++LS +K+F++DECD
Sbjct: 155 DVKTAVFYGGTPITKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDECD 214
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
K+LE+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTL
Sbjct: 215 KVLEELDMRRDVQDIFRATPRDKQVMMFSATLSEEIRPICRRFLQNPLEIFVDDEAKLTL 274
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+Y+KL+ENEKN+KL +LLD LEFNQV+IFVKS R L+ LL+E NFPA+++H
Sbjct: 275 HGLQQYYIKLQENEKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNESNFPAITVHG 334
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
M Q ER+ +Y+ FK+F
Sbjct: 335 NMKQAERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAG 394
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 RFGTKGLAISFVSSPEDEEVLGKIQERFDVKIAEFPEEGIDPSTYL 440
>gi|160358710|sp|A6ZXP4.1|SUB2_YEAS7 RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
Full=Suppressor of BRR1 protein 2
gi|151941918|gb|EDN60274.1| ATP-dependent RNA helicase [Saccharomyces cerevisiae YJM789]
gi|190405090|gb|EDV08357.1| ATP-dependent RNA helicase SUB2 [Saccharomyces cerevisiae RM11-1a]
gi|207346988|gb|EDZ73314.1| YDL084Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|256274096|gb|EEU09007.1| Sub2p [Saccharomyces cerevisiae JAY291]
gi|323305707|gb|EGA59447.1| Sub2p [Saccharomyces cerevisiae FostersB]
gi|323309539|gb|EGA62749.1| Sub2p [Saccharomyces cerevisiae FostersO]
gi|323334342|gb|EGA75723.1| Sub2p [Saccharomyces cerevisiae AWRI796]
gi|323349458|gb|EGA83682.1| Sub2p [Saccharomyces cerevisiae Lalvin QA23]
gi|323355848|gb|EGA87661.1| Sub2p [Saccharomyces cerevisiae VL3]
gi|365766459|gb|EHN07955.1| Sub2p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 446
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/470 (47%), Positives = 295/470 (62%), Gaps = 97/470 (20%)
Query: 41 DDLLDYEDEENTEQIVA----------------DGAGDALAKQKEVKGAYVSIHSSGFRD 84
+DLL+Y D E QI A +G + A + KG+YV IHS+GF+D
Sbjct: 7 EDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNAAAGDKKGSYVGIHSTGFKD 66
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 FLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP------- 94
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS TR L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FKDF
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>gi|238481240|ref|NP_001154707.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004264|gb|AED91647.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 468
Score = 416 bits (1070), Expect = e-113, Method: Compositional matrix adjust.
Identities = 227/463 (49%), Positives = 278/463 (60%), Gaps = 119/463 (25%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD ++ P +
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDS-----------------------GFEHPSEV 72
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
H +A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 73 Q---HECI------PQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MH-----------------------------------------DPMEVYVDDEAKLTLHG 328
M DPME+YVDDEAKLTLHG
Sbjct: 244 MQDGLRTLSGDSVALWWVGFGSGYCVFPRFHRARMGLNVPSNIDPMEIYVDDEAKLTLHG 303
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
L QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GM
Sbjct: 304 LVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGM 363
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
+QEERL +Y+ FK+ H
Sbjct: 364 SQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRF 423
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + +D+++LN VQ+RF+V I ELP++ID STY+
Sbjct: 424 GTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYM 466
>gi|346976312|gb|EGY19764.1| ATP-dependent RNA helicase SUB2 [Verticillium dahliae VdLs.17]
Length = 513
Score = 416 bits (1069), Expect = e-113, Method: Compositional matrix adjust.
Identities = 233/506 (46%), Positives = 303/506 (59%), Gaps = 102/506 (20%)
Query: 41 DDLLDYEDEE-NTEQIVADGAGD-------ALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DL+DY DEE T + A G A + KG+YV IH++GFRDFLLKPE+L
Sbjct: 7 EDLIDYSDEELQTNETAAASNGKKGAADAAATGNSVDKKGSYVGIHATGFRDFLLKPELL 66
Query: 93 RAIVDCWRILVATNLFGRGM------------------DIERVNIVFNYDMP-------- 126
RAI DC + ++G G+ V++ P
Sbjct: 67 RAIGDCG-FEHPSEVYGSGLVRFFPESMVVIVAALGTEAAHVVSVTPRAQTPVRAVSCQT 125
Query: 127 -------EDSDTYLHRVARAG--RFGTK---------AVLGMDILCQAKSGMGKTAVFVL 168
E S H + AG + G A+LG DI+CQAKSG+GKTAVFVL
Sbjct: 126 KSPASRVESSRRTRHADSHAGLSQVGCAEAANVLCDLALLGGDIICQAKSGLGKTAVFVL 185
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
TLQQ+E V VLVMCHTRELAFQI EY RFSKYM +IK GVF+GG PIQKD E +
Sbjct: 186 TTLQQVEPVAGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETI 245
Query: 229 KTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP 286
K + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML+Q++MRRDVQEIFR++P
Sbjct: 246 KNKDTCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATP 305
Query: 287 HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLF 346
KQVMMFSATLS E++P+CKKFM +P E YVD++ KLTLHGLQQ+Y+KL+E EKN+KL
Sbjct: 306 TQKQVMMFSATLSDEVKPICKKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLN 365
Query: 347 ELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-- 404
ELLD L+FNQV+IFVKS R L LL E NFP++++H G++QEER+++Y+EFKDF+
Sbjct: 366 ELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKDFNKR 425
Query: 405 --------------------------------------------KGLAITFASDENDAKI 420
KGLAI+F S + D ++
Sbjct: 426 ICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGLAISFVSTDGDKEV 485
Query: 421 LNNVQDRFDVSISELP-DEIDLSTYI 445
L ++ RF+V++ E P D +D +TY+
Sbjct: 486 LAAIEKRFEVALPEFPKDGVDPATYM 511
>gi|261189163|ref|XP_002620993.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
gi|239591778|gb|EEQ74359.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis SLH14081]
gi|239614696|gb|EEQ91683.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ER-3]
gi|327354159|gb|EGE83016.1| ATP-dependent RNA helicase SUB2 [Ajellomyces dermatitidis ATCC
18188]
Length = 443
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/474 (47%), Positives = 292/474 (61%), Gaps = 97/474 (20%)
Query: 37 MADNDDLLDYEDEE--------------NTEQIVADGAGD--ALAKQKEVKGAYVSIHSS 80
M+ +DL+DY DEE GD + + KG+YV IHS+
Sbjct: 1 MSHEEDLIDYSDEELQATDATATTTAAAGANGAAPKKEGDLTVAGARADKKGSYVGIHST 60
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 GFRDFLLKGELLRAITDCG--------FEHPSEVQQVCI--------------------- 91
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 92 ---PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEY 148
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLK 258
RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR+KKL+L +K
Sbjct: 149 ARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPNIVVGTPGRLNALVRDKKLSLRNIK 208
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVYV
Sbjct: 209 AFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVYV 268
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DD+ KLTLHGL Q+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E N
Sbjct: 269 DDDTKLTLHGLLQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRECN 328
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 FPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSY 388
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGLAI+F S E D ++L +++ RF+V++ E P+ +D S Y+
Sbjct: 389 LHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPEGGVDSSAYM 442
>gi|70984615|ref|XP_747814.1| ATP dependent RNA helicase (Sub2) [Aspergillus fumigatus Af293]
gi|74667372|sp|Q4WCW2.1|SUB2_ASPFU RecName: Full=ATP-dependent RNA helicase sub2
gi|66845441|gb|EAL85776.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
Af293]
gi|159122596|gb|EDP47717.1| ATP dependent RNA helicase (Sub2), putative [Aspergillus fumigatus
A1163]
Length = 448
Score = 416 bits (1068), Expect = e-113, Method: Compositional matrix adjust.
Identities = 232/479 (48%), Positives = 294/479 (61%), Gaps = 102/479 (21%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADGAGD------ALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE T A+GA D + + KG+YV IHS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPAANGAQDKKGDLTVSGGRPDKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDFLLK E+LRAI DC F ++++V I
Sbjct: 61 RDFLLKGELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY R
Sbjct: 90 -PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYAR 148
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR KKL+L +K F
Sbjct: 149 FSKYLPDVKTAVFYGGTPIQKDIEVLSNKESYPNIVVGTPGRLNALVREKKLSLRNVKAF 208
Query: 261 ILDECDKMLEQL-------EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
+LDECDKML+Q+ MRRDVQEIFR++P KQVMMFSATLS+EIRP+CKKFM +P
Sbjct: 209 VLDECDKMLDQIGKQAQIAHMRRDVQEIFRATPADKQVMMFSATLSQEIRPICKKFMRNP 268
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
+EVYVDD+ KLTLHGLQQ+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L L
Sbjct: 269 LEVYVDDDTKLTLHGLQQYYIKLSESEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKL 328
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------- 404
L E NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 LRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPA 388
Query: 405 -----------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 389 DADSYLHRVGRAGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDSSTYM 447
>gi|432094980|gb|ELK26388.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 509
Score = 415 bits (1067), Expect = e-113, Method: Compositional matrix adjust.
Identities = 224/431 (51%), Positives = 272/431 (63%), Gaps = 103/431 (23%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE++E + A + +K+VKG+YVSIHSSGFRDFLLKPE+ RAIVDC
Sbjct: 8 NELLDYEEDEQPQ---APTESTPVPPKKDVKGSYVSIHSSGFRDFLLKPELPRAIVDC-- 62
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
++ H + +A+LGMD+LCQA+SGM
Sbjct: 63 ------------------------------SFEHASEVQHQCTPQAILGMDVLCQAQSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKT+VFVLATLQQ I KEYERFSKYM +KV VFFGGL
Sbjct: 93 GKTSVFVLATLQQ----------------------IRKEYERFSKYMPIVKVSVFFGGLS 130
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
++KD+E LK + P ++VG PGRI ALVRN+ LNL +KHF+LDECD+MLEQL+MRRDVQE
Sbjct: 131 MKKDKEVLKKNYPHVMVGIPGRISALVRNRSLNLRNVKHFVLDECDQMLEQLDMRRDVQE 190
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
IFR +P KQ MMFSATLSK+IRP+C+KFM DPMEV VDD+ KLTLHG QQ+YVKLK++E
Sbjct: 191 IFRLTPREKQCMMFSATLSKQIRPICRKFMQDPMEVLVDDKTKLTLHGPQQYYVKLKDSE 250
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN KLF+LLDVLEFNQVVIFV+ V C+AL+ LL E+NFPA++IH+ M QEERL +YQ+F
Sbjct: 251 KNCKLFDLLDVLEFNQVVIFVRLVQCCMALAQLLVEENFPAIAIHKAMAQEERLSRYQQF 310
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
KDF KGLAITF S
Sbjct: 311 KDFQRRILVATNLFGRGMDIERVNIVFNYDTPEDSDTYFPRVARAGRFGTKGLAITFVSH 370
Query: 415 ENDAKILNNVQ 425
ENDAKILN VQ
Sbjct: 371 ENDAKILNEVQ 381
>gi|401626423|gb|EJS44370.1| sub2p [Saccharomyces arboricola H-6]
Length = 446
Score = 415 bits (1066), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/470 (47%), Positives = 294/470 (62%), Gaps = 97/470 (20%)
Query: 41 DDLLDYEDEENTEQIVA----------------DGAGDALAKQKEVKGAYVSIHSSGFRD 84
+DLL+Y D E Q+ A DG + + KG+YV IHS+GF+D
Sbjct: 7 EDLLEYSDNEQEIQVDASKAAEAGETGAATSAPDGDDNNNTAAGDKKGSYVGIHSTGFKD 66
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 FLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP------- 94
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS TR L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FKDF
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>gi|160358722|sp|A6R603.2|SUB2_AJECN RecName: Full=ATP-dependent RNA helicase SUB2
Length = 442
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 223/473 (47%), Positives = 291/473 (61%), Gaps = 96/473 (20%)
Query: 37 MADNDDLLDYEDEE-------------NTEQIVADGAGDAL--AKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE GD + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQATDAAAGTAAAGANGAAPKKEGDLTVSGARADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY
Sbjct: 91 --PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRDKKLSLRNIKA 208
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVYVD
Sbjct: 209 FVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVYVD 268
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D+ KLTLHGL Q+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E NF
Sbjct: 269 DDTKLTLHGLLQYYIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRECNF 328
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
P++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 PSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYL 388
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGLAI+F S E D ++L +++ RF+V++ E P +D S Y+
Sbjct: 389 HRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 441
>gi|342874043|gb|EGU76118.1| hypothetical protein FOXB_13364 [Fusarium oxysporum Fo5176]
Length = 495
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 222/495 (44%), Positives = 302/495 (61%), Gaps = 88/495 (17%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA V KG+YV IHS+GFRDFLLK E
Sbjct: 1 MSHEEDLIDYSDEEIGGNETTATTSNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE 60
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDM------------------------- 125
++RAI DC ++++ + R N F + +
Sbjct: 61 LIRAIGDC--VIISPPFKRSSISQARTNGHFFFAIVIFVIVGAVKAGSERRSVSGRNKTT 118
Query: 126 ------PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
P++ T + + +A+LG DI+CQAKSG+GKTAVFVLATLQQ+E +
Sbjct: 119 GERRGSPQNHSTVVTIITLQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNG 178
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVV 237
V V+VMCHTRELA+QI EY RFSKYM +IK GVF+GG PI+ D E LK + P I+V
Sbjct: 179 EVSVVVMCHTRELAYQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHIIV 238
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGR+ ALVR+K L L ++ F+LDECDKML+Q +MR DVQ++FR++P KQVMMFSAT
Sbjct: 239 GTPGRLKALVRDKALRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPPQKQVMMFSAT 298
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
LS+E++P+C+KFM +P E YVD++ KLTLHGLQQ Y+KL+E EKN+KL ELLD L+FNQV
Sbjct: 299 LSEEVKPICRKFMQNPTEHYVDEDTKLTLHGLQQFYIKLEEKEKNRKLNELLDELQFNQV 358
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------- 404
+IFV+S R L LL E NFP++++H G++QEER+++Y+EFK+F
Sbjct: 359 IIFVRSTVRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRG 418
Query: 405 ---------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431
KGLAI+F S + D ++L ++ RF+V+
Sbjct: 419 IDIERINLAINYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVA 478
Query: 432 ISELPDE-IDLSTYI 445
+ E P E +D STY+
Sbjct: 479 LPEFPKEGVDASTYM 493
>gi|6320119|ref|NP_010199.1| Sub2p [Saccharomyces cerevisiae S288c]
gi|2500534|sp|Q07478.1|SUB2_YEAST RecName: Full=ATP-dependent RNA helicase SUB2; AltName:
Full=Suppressor of BRR1 protein 2
gi|1431108|emb|CAA98650.1| SUB2 [Saccharomyces cerevisiae]
gi|51013265|gb|AAT92926.1| YDL084W [Saccharomyces cerevisiae]
gi|285810951|tpg|DAA11775.1| TPA: Sub2p [Saccharomyces cerevisiae S288c]
gi|349576996|dbj|GAA22165.1| K7_Sub2p [Saccharomyces cerevisiae Kyokai no. 7]
gi|392300033|gb|EIW11124.1| Sub2p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 446
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/470 (47%), Positives = 294/470 (62%), Gaps = 97/470 (20%)
Query: 41 DDLLDYEDEENTEQIVA----------------DGAGDALAKQKEVKGAYVSIHSSGFRD 84
+DLL+Y D E QI A +G + + KG+YV IHS+GF+D
Sbjct: 7 EDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNTAAGDKKGSYVGIHSTGFKD 66
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 FLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP------- 94
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS TR L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FKDF
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>gi|358393635|gb|EHK43036.1| hypothetical protein TRIATDRAFT_301009 [Trichoderma atroviride IMI
206040]
Length = 436
Score = 414 bits (1065), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/466 (47%), Positives = 294/466 (63%), Gaps = 89/466 (19%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGA-GDALAKQK-EVKGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE ++G G+A A + KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEEIGAANDTAAATASNGKKGEAAASGAVDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+LRAI DC F ++++ I +A+L
Sbjct: 61 PELLRAIGDCG--------FEHPSEVQQTCI------------------------PQALL 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFSKYM
Sbjct: 89 GGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFSKYMP 148
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
+IK GVF+GG PI+ D E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDECD
Sbjct: 149 DIKTGVFYGGTPIKNDVETLKGKDTCPHIIVGTPGRLKALVRDKALRLGSVRIFVLDECD 208
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KML+Q +MR DVQ++FR++P KQVMMFSATL++ I+P+C+KFM +P E YVD++ KLTL
Sbjct: 209 KMLDQPDMRTDVQDVFRATPQQKQVMMFSATLAENIKPICRKFMQNPTEHYVDEDTKLTL 268
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H
Sbjct: 269 HGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTVRATELDKLLRECNFPSIAVHS 328
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G++QEER+++Y+EFK+F
Sbjct: 329 GVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDLPGDASSYLHRVGRAG 388
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S E D ++L ++ RF+V++ E P E +D STY+
Sbjct: 389 RFGTKGLAISFVSTEGDQEVLKEIEKRFEVALPEFPKEGVDASTYM 434
>gi|330906893|ref|XP_003295639.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
gi|311332936|gb|EFQ96278.1| hypothetical protein PTT_01995 [Pyrenophora teres f. teres 0-1]
Length = 438
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/472 (46%), Positives = 298/472 (63%), Gaps = 97/472 (20%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGA----------GDALAKQKEVKGAYVSIHSSGFRDF 85
M+ +DL+DY DEE +I ++GA GDA +K G+YV IHS+GFRDF
Sbjct: 1 MSHEEDLIDYSDEEIQPTEIPSNGAAAATKADLTAGDAAGDKK---GSYVGIHSTGFRDF 57
Query: 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
LLK E++RAI DC F ++++V I +
Sbjct: 58 LLKDELVRAITDCG--------FEHPSEVQQVTI------------------------PQ 85
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLE--TTDSNVYVLVMCHTRELAFQISKEYERF 203
A+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHTRELA+QI EY RF
Sbjct: 86 AILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGAATILVMCHTRELAYQIRNEYNRF 145
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
+K++ +++VGVF+GG P+QKD E L K +P I+VGTPGRI ALVR++ L L+ LKHF+
Sbjct: 146 AKFLPDVRVGVFYGGTPVQKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANLKHFV 205
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKML+Q +MR DVQ IFR++P KQVMMFSATL+K++R VCKKFM +P+E+YVDDE
Sbjct: 206 LDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSATLNKDVRVVCKKFMQNPLEIYVDDE 265
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFV+S RC L LL E NFP+
Sbjct: 266 KKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQVIIFVRSTLRCSELDKLLRECNFPS 325
Query: 382 VSIHRGMTQEERLKKYQEFKDFH------------------------------------- 404
++H G++QEER+K+Y+EFK+F
Sbjct: 326 TAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHR 385
Query: 405 ---------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYIE 446
KGL+I+F S +D +L ++++RF V + E P+ ++ +TY++
Sbjct: 386 VGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQVELPEFPENGVESATYMD 437
>gi|344228996|gb|EGV60882.1| hypothetical protein CANTEDRAFT_128604 [Candida tenuis ATCC 10573]
Length = 431
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/455 (48%), Positives = 286/455 (62%), Gaps = 82/455 (18%)
Query: 41 DDLLDYED-EENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
++LLDY D EE A D K+ + KG+YV IH++GFRDFLLKPE+LRAI DC
Sbjct: 7 EELLDYSDSEEIAVTQPTTTATDGNEKEADKKGSYVGIHATGFRDFLLKPELLRAIGDCG 66
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
F ++++V I +++LG D+LCQAKSG
Sbjct: 67 --------FEHPSEVQQVCI------------------------PQSILGTDVLCQAKSG 94
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
+GKTAVFVL+TLQQL+ V LV+CHTRELA+QI EY RFSKYM +++ VF+GG
Sbjct: 95 LGKTAVFVLSTLQQLDPVPGEVSTLVVCHTRELAYQIRNEYARFSKYMPDVRTEVFYGGT 154
Query: 220 PIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRD 277
PI KD LK P IVV TPGR+ ALV +K L L+ +K F++DECDK+L+ ++MRRD
Sbjct: 155 PINKDVAKLKDKETCPHIVVATPGRLHALVNDKALRLNNIKSFVIDECDKVLDSVDMRRD 214
Query: 278 VQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337
VQ+IFR++PH KQVMMFSATLS+EIRP+CKKFM +P+E+YVDDEAKLTLHGLQQ+Y+KL
Sbjct: 215 VQDIFRATPHQKQVMMFSATLSQEIRPICKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLD 274
Query: 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397
E EKN+KL +LLD LEFNQV+IFVKS R L LL NFP++++H G+ QEER+ +Y
Sbjct: 275 EKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELDKLLCACNFPSIAVHSGLKQEERIARY 334
Query: 398 QEFKDFH----------------------------------------------KGLAITF 411
+ FK+F+ KGLAI+F
Sbjct: 335 KSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISF 394
Query: 412 ASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
S D ++L +Q RFDV ++E P+E +D STY+
Sbjct: 395 VSTPEDEEVLEKIQSRFDVKVTEFPEEGVDPSTYM 429
>gi|259145161|emb|CAY78425.1| Sub2p [Saccharomyces cerevisiae EC1118]
Length = 446
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 221/470 (47%), Positives = 294/470 (62%), Gaps = 97/470 (20%)
Query: 41 DDLLDYEDEENTEQIVA----------------DGAGDALAKQKEVKGAYVSIHSSGFRD 84
+DLL+Y D E QI A +G + A + KG+YV IHS+GF+D
Sbjct: 7 EDLLEYSDNEQEIQIDASKAAEAGETGAATSATEGDNNNNAAAGDKKGSYVGIHSTGFKD 66
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 FLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP------- 94
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTIRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FKDF
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRV 394
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRAGRFGTKGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>gi|385305885|gb|EIF49828.1| atp-dependent rna helicase sub2 [Dekkera bruxellensis AWRI1499]
Length = 433
Score = 414 bits (1064), Expect = e-113, Method: Compositional matrix adjust.
Identities = 216/457 (47%), Positives = 289/457 (63%), Gaps = 84/457 (18%)
Query: 41 DDLLDYED-EENTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPEILRAIVD 97
++LLDY D EE D K+ E KG+YV +H++GFRDFLLKPE+LRAI D
Sbjct: 7 EELLDYSDSEEINVAPTTTQTSDETKKEGETDKKGSYVGVHTTGFRDFLLKPELLRAIAD 66
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C F ++++ I +A+LG D+LCQAK
Sbjct: 67 CG--------FEHPSEVQQACI------------------------PQAILGNDVLCQAK 94
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SG+GKTAVFVL+TLQQL+ T + +V+CHTRELA+QI EY RFSKYM +++ VF+G
Sbjct: 95 SGLGKTAVFVLSTLQQLDPTPGEISTVVICHTRELAYQIRNEYVRFSKYMPDVRTAVFYG 154
Query: 218 GLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
G+ I KDEE LK + P IVVGTPGR+ ALVR K + L+ +K+F++DECD++LEQ+ MR
Sbjct: 155 GISINKDEELLKNKDTCPHIVVGTPGRLTALVREKAIRLNNVKNFVIDECDRVLEQISMR 214
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQ+IFR++P+ KQVMMFSATL E+RPVCKKFM +P+E+YVDDE KLTLHGLQQ+Y+K
Sbjct: 215 RDVQDIFRATPYQKQVMMFSATLPTEMRPVCKKFMKNPLEIYVDDEKKLTLHGLQQYYIK 274
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L E +KN KL ELLD LEFNQV+IFVKS R AL+ LL + NFP++ +H GM QEER+
Sbjct: 275 LPEEKKNVKLAELLDSLEFNQVIIFVKSTRRADALNKLLCDSNFPSICVHSGMPQEERIA 334
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+Y+ FK+++ KGL++
Sbjct: 335 RYKSFKEYNKRICVSTDVFGRGIDIERINVAINYDMPKEADQYLHRVGRAGRFGTKGLSV 394
Query: 410 TFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
+F S ++D ++L+ +Q RF+V + E P D ID STY+
Sbjct: 395 SFVSSKDDEELLDQIQQRFEVKMQEFPADGIDPSTYM 431
>gi|367016787|ref|XP_003682892.1| hypothetical protein TDEL_0G03140 [Torulaspora delbrueckii]
gi|359750555|emb|CCE93681.1| hypothetical protein TDEL_0G03140 [Torulaspora delbrueckii]
Length = 444
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 218/468 (46%), Positives = 295/468 (63%), Gaps = 95/468 (20%)
Query: 41 DDLLDYEDEENTEQIV--------------ADGAGDALAKQKEVKGAYVSIHSSGFRDFL 86
+DLL+Y D E Q+ A+ G+A + KG+YV IHS+GF+DFL
Sbjct: 7 EDLLEYSDNEQEIQVDSKEAASAEVAKETDAEATGEANNADNDKKGSYVGIHSTGFKDFL 66
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
L+PE+ RAI+DC ++ P S+ H + ++
Sbjct: 67 LEPELSRAIIDC-----------------------GFEHP--SEVQQHTIP-------QS 94
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKY
Sbjct: 95 IHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKY 154
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M ++K VF+GG PI KD E LK P IVV TPGR+ ALVR+K ++LS +K+F++DE
Sbjct: 155 MPDVKTAVFYGGTPIAKDAELLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNFVIDE 214
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKL
Sbjct: 215 CDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKL 274
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFV+S +R L+ LL+ NFPA+++
Sbjct: 275 TLHGLQQYYIKLEEREKNRKLAKLLDDLEFNQVIIFVRSTSRANELTKLLNASNFPALTV 334
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H M QEER+ +Y+ FKDF
Sbjct: 335 HGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGR 394
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 AGRFGTKGLAISFVSTKEDEEVLTKIQERFDVKIAEFPEEGIDPSTYL 442
>gi|367003483|ref|XP_003686475.1| hypothetical protein TPHA_0G02050 [Tetrapisispora phaffii CBS 4417]
gi|357524776|emb|CCE64041.1| hypothetical protein TPHA_0G02050 [Tetrapisispora phaffii CBS 4417]
Length = 438
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 215/462 (46%), Positives = 295/462 (63%), Gaps = 89/462 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAG--------DALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DLL+Y D E Q+VAD A D + ++ KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQDIQVVADKAAENTETATADEGVEGEDKKGSYVGIHSTGFKDFLLKPELS 66
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI+DC ++ P S+ H + +++ G D+
Sbjct: 67 RAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTDV 94
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM +K
Sbjct: 95 LCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPEVKT 154
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
VF+GG PI+ D + LK PQI+V TPGR+ ALVR+K ++LS +K+F++DECDK+LE
Sbjct: 155 AVFYGGTPIKNDADLLKNKETAPQIIVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLE 214
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+L+MRRDVQ+IFR++P KQVMMFSATLS++IRP+C++F+ +P+E++VDDEAKLTLHGLQ
Sbjct: 215 ELDMRRDVQDIFRATPRDKQVMMFSATLSEDIRPICRRFLQNPLEIFVDDEAKLTLHGLQ 274
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y+K++E EKN+KL +LLD LEFNQV+IFVKS R L+ LL++ NFPA+++H M Q
Sbjct: 275 QYYIKIEEREKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNDSNFPAITVHGHMKQ 334
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
ER+ +Y+ FKDF
Sbjct: 335 AERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT 394
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLA++F S D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 KGLAVSFVSSPEDEEVLGKIQERFDVKIAEYPEEGIDPSTYL 436
>gi|189198808|ref|XP_001935741.1| ATP-dependent RNA helicase SUB2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187982840|gb|EDU48328.1| ATP-dependent RNA helicase SUB2 [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 471
Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust.
Identities = 225/476 (47%), Positives = 304/476 (63%), Gaps = 72/476 (15%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGAGDALAKQ-------KEVKGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE +I ++GA A + KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEEIQPTEIPSNGAAGATKADLTAGEAAGDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCW--RILVATNLF---GRGMDIER-VNIVFNYDMPEDSDTYLHRVARAGRF 142
E++RAI DC NL GR + R V+ F + + +H ++ +
Sbjct: 61 DELVRAITDCGFEHPSEEGNLATPDGRTLRSPRFVSTTFK------THSDIHCALQSNKV 114
Query: 143 G-TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCHTRELAFQISKE 199
+A+LG D+LCQAKSG+GKTAVFVLATLQQ++ +LVMCHTRELA+QI E
Sbjct: 115 TIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEAGAATILVMCHTRELAYQIRNE 174
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLL 257
Y RF+K++ ++VGVF+GG P+QKD E L K +P I+VGTPGRI ALVR++ L L+ L
Sbjct: 175 YNRFAKFLPEVRVGVFYGGTPVQKDIELLSNKDSHPHIIVGTPGRINALVRDRHLRLANL 234
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHF+LDECDKML+Q +MR DVQ IFR++P KQVMMFSATL+K++R VCKKFM +P+E+Y
Sbjct: 235 KHFVLDECDKMLDQPDMRNDVQAIFRATPQHKQVMMFSATLNKDVRVVCKKFMQNPLEIY 294
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFV+S RC L LL E
Sbjct: 295 VDDEKKLTLHGLQQYYMKLDEKEKNRKLNDLLDSLEFNQVIIFVRSTLRCSELDKLLREC 354
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+ ++H G++QEER+K+Y+EFK+F
Sbjct: 355 NFPSTAVHSGISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADA 414
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYIE 446
KGL+I+F S +D +L ++++RF V + E P+ I+ +TY++
Sbjct: 415 YLHRVGRAGRFGTKGLSISFVSSPDDEAVLKSIEERFQVELPEFPENGIESATYMD 470
>gi|344228997|gb|EGV60883.1| ATP-dependent RNA helicase SUB2 [Candida tenuis ATCC 10573]
Length = 431
Score = 413 bits (1061), Expect = e-113, Method: Compositional matrix adjust.
Identities = 219/455 (48%), Positives = 285/455 (62%), Gaps = 82/455 (18%)
Query: 41 DDLLDYED-EENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
++LLDY D EE A D K+ + KG+YV IH++GFRDFLLKPE+LRAI DC
Sbjct: 7 EELLDYSDSEEIAVTQPTTTATDGNEKEADKKGSYVGIHATGFRDFLLKPELLRAIGDCG 66
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
F +++V I +++LG D+LCQAKSG
Sbjct: 67 --------FEHPSKVQQVCI------------------------PQSILGTDVLCQAKSG 94
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
+GKTAVFVL+TLQQL+ V LV+CHTRELA+QI EY RFSKYM +++ VF+GG
Sbjct: 95 LGKTAVFVLSTLQQLDPVPGEVSTLVVCHTRELAYQIRNEYARFSKYMPDVRTEVFYGGT 154
Query: 220 PIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRD 277
PI KD LK P IVV TPGR+ ALV +K L L+ +K F++DECDK+L+ ++MRRD
Sbjct: 155 PINKDVAKLKDKETCPHIVVATPGRLHALVNDKALRLNNIKSFVIDECDKVLDSVDMRRD 214
Query: 278 VQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337
VQ+IFR++PH KQVMMFSATLS+EIRP+CKKFM +P+E+YVDDEAKLTLHGLQQ+Y+KL
Sbjct: 215 VQDIFRATPHQKQVMMFSATLSQEIRPICKKFMQNPLEIYVDDEAKLTLHGLQQYYLKLD 274
Query: 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397
E EKN+KL +LLD LEFNQV+IFVKS R L LL NFP++++H G+ QEER+ +Y
Sbjct: 275 EKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELDKLLCACNFPSIAVHSGLKQEERIARY 334
Query: 398 QEFKDFH----------------------------------------------KGLAITF 411
+ FK+F+ KGLAI+F
Sbjct: 335 KSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAISF 394
Query: 412 ASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
S D ++L +Q RFDV ++E P+E +D STY+
Sbjct: 395 VSTPEDEEVLEKIQSRFDVKVTEFPEEGVDPSTYM 429
>gi|225561088|gb|EEH09369.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus G186AR]
gi|240280352|gb|EER43856.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus H143]
gi|325096576|gb|EGC49886.1| ATP-dependent RNA helicase SUB2 [Ajellomyces capsulatus H88]
Length = 477
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 224/476 (47%), Positives = 295/476 (61%), Gaps = 67/476 (14%)
Query: 37 MADNDDLLDYEDEE-------------NTEQIVADGAGDAL--AKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE GD + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQATDAAAGTAAAGANGAAPKKEGDLTVSGARADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDC-WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
FRDFLLK E+LRAI DC + + G +R + + YL +
Sbjct: 61 FRDFLLKGELLRAITDCGFEHPSEVSALGTATRRKRGYSINGWQYSAAWHNYLSILVIFV 120
Query: 141 R--FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+ A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI
Sbjct: 121 QQVCIPTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKN 180
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSL 256
EY RFSKY+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR+KKL+L
Sbjct: 181 EYARFSKYLPDVKTAVFYGGTPMQKDIELLSSKDTYPSIVVGTPGRLNALVRDKKLSLRN 240
Query: 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EV
Sbjct: 241 IKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEV 300
Query: 317 YVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376
YVDD+ KLTLHGL Q+Y+KL E+EKN+KL ELLD LEFNQV+IFVKS R L LL E
Sbjct: 301 YVDDDTKLTLHGLLQYYIKLGESEKNRKLNELLDSLEFNQVIIFVKSTQRASELDKLLRE 360
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------- 404
NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 361 CNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADAD 420
Query: 405 --------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGLAI+F S E D ++L +++ RF+V++ E P +D S Y+
Sbjct: 421 SYLHRVGRAGRFGTKGLAISFVSSEQDQEVLKDIEKRFEVALPEYPQGGVDSSAYM 476
>gi|405952463|gb|EKC20272.1| Spliceosome RNA helicase BAT1 [Crassostrea gigas]
Length = 424
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 211/430 (49%), Positives = 283/430 (65%), Gaps = 85/430 (19%)
Query: 68 KEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPE 127
+E + + SIHSSGFRD LLKPE+L+AI D RG
Sbjct: 25 EERRDKFSSIHSSGFRDLLLKPELLQAIKD------------RG---------------- 56
Query: 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187
Y H +AVL MD+LCQAKSGMGKTAVFV++TLQQ++ + +V VLV+
Sbjct: 57 ----YEHPSQVQHECIPQAVLSMDVLCQAKSGMGKTAVFVISTLQQIQESIDDVVVLVIA 112
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
HTRELA+QI+ EY+ FSKY+ IKV VFFGGLPI++DEE L + P IVVGTPGR+LALV
Sbjct: 113 HTRELAYQIAHEYQTFSKYLPEIKVAVFFGGLPIKRDEEVLAKNRPNIVVGTPGRLLALV 172
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ KKL L L++FI+DECD++L+++ MR+DVQ IF SP KQVMMFSATL+K++R VCK
Sbjct: 173 QKKKLTLDNLRYFIVDECDQVLKEIVMRKDVQAIFIRSPCAKQVMMFSATLNKDLRTVCK 232
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
+FM DP+E+ +DDE+KLTLHGLQQ+Y++++ENEK++K+ +LLD+LEFNQV+IFV S++RC
Sbjct: 233 RFMSDPVEIIIDDESKLTLHGLQQYYIQMEENEKSRKICDLLDLLEFNQVIIFVNSISRC 292
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------- 404
AL++LL EQNFP ++IHR M Q ERL +YQ+FKDF
Sbjct: 293 QALASLLLEQNFPVLTIHRAMEQTERLSRYQQFKDFQKRILVATNLFGRGMDIEREKSNQ 352
Query: 405 ------------------------------KGLAITFASDENDAKILNNVQDRFDVSISE 434
KGLAITF S ++DA+++N+VQ+RF+ I +
Sbjct: 353 IGFDNIINYDTPEESDTYLHRVGRAGRFGTKGLAITFVSSQSDAEVMNSVQERFEAEIEK 412
Query: 435 LPDEIDLSTY 444
+P +ID+S+Y
Sbjct: 413 MPTQIDVSSY 422
>gi|347828919|emb|CCD44616.1| similar to ATP-dependent RNA helicase sub2 [Botryotinia fuckeliana]
Length = 444
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/474 (47%), Positives = 296/474 (62%), Gaps = 103/474 (21%)
Query: 38 ADNDDLLDYEDEE------------NTEQIVADG-----AGDALAKQKEVKGAYVSIHSS 80
A +DL+DY DEE + D +G+A A +K G+YV IHS+
Sbjct: 3 AAEEDLIDYSDEELATTEAPAPAAGANGGVKGDSGNLTVSGNAAAAKK---GSYVGIHST 59
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFR+FLLKPE+LRAI C F ++++V I
Sbjct: 60 GFREFLLKPELLRAISWCG--------FEHPSEVQQVCI--------------------- 90
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
+A+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELA+QI EY
Sbjct: 91 ---PQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEY 147
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLL 257
+RF +M ++K+GVF+GG+PI KD E LK TH P I+VGTPGR+ ALVR+K L L+ +
Sbjct: 148 QRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETH-PHIIVGTPGRLNALVRDKYLRLNSV 206
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+E+Y
Sbjct: 207 KVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSATLSQEVRPICKKFMQNPLEIY 266
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+D+E KLTL+GLQQ+Y+KL+E EKN++L ELLD L FNQV+IFVKS R L LL E
Sbjct: 267 IDNETKLTLYGLQQYYIKLEEKEKNRRLNELLDELSFNQVIIFVKSTVRATELDKLLREC 326
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+V+IH G++QEER+K++ +FKDF+
Sbjct: 327 NFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADS 386
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTY 444
KGLAI+F S+E D ++L V+ RF+V++ E P+ +D + Y
Sbjct: 387 YLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAY 440
>gi|346325305|gb|EGX94902.1| ATP-dependent RNA helicase SUB2 [Cordyceps militaris CM01]
Length = 740
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 234/541 (43%), Positives = 319/541 (58%), Gaps = 101/541 (18%)
Query: 6 SSQEKLSCGSGNVFLFFRAFI---RFSSSFPHSK---MADNDDLLDYEDEE---NTEQIV 56
S Q + S ++F FR+ + R + +PH M+ +DL+DY DEE N
Sbjct: 198 SPQRSVRKRSLSIFREFRSELISERSVAIYPHETPLIMSHEEDLIDYSDEEIGANETANT 257
Query: 57 ADGAGDALAKQK-EVKGAYVSIHSSGFRDFLLKPEILRAIVDCW---------------R 100
A G+ A + KG+YV IHS+GFRDFLLKPE+LRAI DC R
Sbjct: 258 ATKKGELAANSNVDKKGSYVGIHSTGFRDFLLKPELLRAIGDCGFEHPSEGTKTEEASSR 317
Query: 101 ILVATNL--FGRGMDIERVNIV----------FNYDMPEDSDTYLHRVARAGRFGTKAVL 148
+ + + + G+ R++ V + S L + +A + +
Sbjct: 318 LEESKTVDDYIDGLPAFRIDAVDLGRSATSPGGRTSRSKTSSRPLEKSGKANPVDVQWHI 377
Query: 149 GMDIL---------------CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
MD++ CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA
Sbjct: 378 DMDLVQQTCIPQALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELA 437
Query: 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKK 251
+QI EY RFSKYM +IK GVF+GG PI+ D E LK + P I+VGTPGR+ ALVR+K
Sbjct: 438 YQIRDEYNRFSKYMPDIKTGVFYGGTPIKTDMETLKNKDTCPHIIVGTPGRLKALVRDKA 497
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
L L ++ F+LDECDKML+Q +MR DVQ++FR++PH KQVMMFSATLS+E++P+CKKFM
Sbjct: 498 LRLGSVRIFVLDECDKMLDQPDMRTDVQDVFRATPHQKQVMMFSATLSEEVKPICKKFMQ 557
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
+P E YVD++ KLTLHGLQQ+Y+KL E EKN+KL +LLD L+FNQV+IFV+S R L
Sbjct: 558 NPTEHYVDEDTKLTLHGLQQYYIKLDEKEKNRKLNDLLDELQFNQVIIFVRSTVRATELD 617
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------- 404
LL E NFP++++H G++QEER+++Y+EFK+F
Sbjct: 618 KLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLAINYDL 677
Query: 405 -------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTY 444
KGLAI+F S E+D K+L ++ RF+V++ E P E +D STY
Sbjct: 678 SADASSYLHRVGRAGRFGTKGLAISFISSEDDQKVLGEIEKRFEVALPEFPKEGVDASTY 737
Query: 445 I 445
+
Sbjct: 738 M 738
>gi|156055836|ref|XP_001593842.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980]
gi|160358709|sp|A7EIX7.1|SUB2_SCLS1 RecName: Full=ATP-dependent RNA helicase sub2
gi|154703054|gb|EDO02793.1| hypothetical protein SS1G_05270 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 444
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 223/474 (47%), Positives = 296/474 (62%), Gaps = 103/474 (21%)
Query: 38 ADNDDLLDYEDEE------------NTEQIVADG-----AGDALAKQKEVKGAYVSIHSS 80
A +DL+DY DEE + D +G+A A +K G+YV IHS+
Sbjct: 3 AAEEDLIDYSDEELATTEAPAPAAGANGGVKGDSGNLTVSGNAAAAKK---GSYVGIHST 59
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFR+FLLKPE+LRAI C F ++++V I
Sbjct: 60 GFREFLLKPELLRAISWCG--------FEHPSEVQQVCI--------------------- 90
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
+A+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELA+QI EY
Sbjct: 91 ---PQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEY 147
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLL 257
+RF +M ++K+GVF+GG+PI KD E LK TH P I+VGTPGR+ ALVR+K L L+ +
Sbjct: 148 QRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETH-PHIIVGTPGRLNALVRDKYLRLNSV 206
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+E+Y
Sbjct: 207 KVFVLDECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSATLSQEVRPICKKFMQNPLEIY 266
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+D+E KLTL+GLQQ+Y+KL+E EKN++L ELLD L FNQV+IFVKS R L LL E
Sbjct: 267 IDNETKLTLYGLQQYYIKLEEREKNRRLNELLDELSFNQVIIFVKSTVRATELDKLLREC 326
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+V+IH G++QEER+K++ +FKDF+
Sbjct: 327 NFPSVAIHSGVSQEERIKRFNDFKDFNKRICVATDVFGRGIDVNKINLAINYDLPPDADS 386
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTY 444
KGLAI+F S+E D ++L V+ RF+V++ E P+ +D + Y
Sbjct: 387 YLHRVGRAGRFGTKGLAISFVSNEADQEVLKAVEKRFEVALPEYPEGGVDSAAY 440
>gi|452825333|gb|EME32330.1| ATP-dependent RNA helicase [Galdieria sulphuraria]
Length = 442
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 208/374 (55%), Positives = 263/374 (70%), Gaps = 34/374 (9%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
+ ++DL+DYE+E+ T V GA + + ++ KG+YV IHS+GF+DFLLKPE+LRAI
Sbjct: 10 LVGDEDLVDYEEEDETS--VPSGAVKSASTKESKKGSYVGIHSTGFKDFLLKPELLRAIQ 67
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +A+LG DI+CQA
Sbjct: 68 DCG--------FEHPSEVQEQCI------------------------PQAILGGDIVCQA 95
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVF LA L QL D V +V+ HTRELA+QI+ E+ERFSKY+ N++ V +
Sbjct: 96 KSGMGKTAVFALAVLHQLVPEDGKVSCVVLGHTRELAYQIAHEFERFSKYLPNVRTAVLY 155
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PI++ + LK P IVVGTPGR+L L R K L++S ++ F+LDECDKMLEQL+MRR
Sbjct: 156 GGVPIKQHIDRLKQSPPHIVVGTPGRVLDLSRRKALDISSVQFFVLDECDKMLEQLDMRR 215
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIFR +PH KQVMMFSATLSKEIR VCKKF+ +PMEVYVDDEAKLTLHGL Q+Y+KL
Sbjct: 216 DVQEIFRMTPHNKQVMMFSATLSKEIRNVCKKFLSNPMEVYVDDEAKLTLHGLLQYYLKL 275
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
+E EKN+KL +LLD LEFNQVVIFVKSV R AL+ LL E NFP+++IH M Q ER+ +
Sbjct: 276 EEQEKNRKLMDLLDTLEFNQVVIFVKSVQRANALNKLLVEYNFPSIAIHSSMAQSERISR 335
Query: 397 YQEFKDFHKGLAIT 410
YQ FKDF K L +
Sbjct: 336 YQMFKDFQKRLLVA 349
Score = 76.3 bits (186), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 42/58 (72%), Gaps = 10/58 (17%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPE----------DSDTYLHRVARAGRFGTKAV 147
R+LVAT++F RG+DIERVNIV NYDMP+ +D YLHRV RAGRFGTK +
Sbjct: 345 RLLVATDIFARGIDIERVNIVINYDMPDLKGPEATAKTGADAYLHRVGRAGRFGTKGL 402
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/41 (56%), Positives = 32/41 (78%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI+F S + D +LN VQ RF+VSI LPD+ID+++Y+
Sbjct: 400 KGLAISFISSKEDNDVLNEVQSRFEVSIEPLPDKIDVASYM 440
>gi|254565085|ref|XP_002489653.1| Component of the TREX complex required for nuclear mRNA export
[Komagataella pastoris GS115]
gi|238029449|emb|CAY67372.1| Component of the TREX complex required for nuclear mRNA export
[Komagataella pastoris GS115]
gi|328350072|emb|CCA36472.1| ATP-dependent RNA helicase UAP56/SUB2 [Komagataella pastoris CBS
7435]
Length = 436
Score = 411 bits (1057), Expect = e-112, Method: Compositional matrix adjust.
Identities = 219/459 (47%), Positives = 288/459 (62%), Gaps = 86/459 (18%)
Query: 41 DDLLDYEDEEN-----TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
++LLDY D E + AD K+ KG+YV +H++GF+DFLL+PE+ RAI
Sbjct: 7 EELLDYSDSEEIAVAPSGTTTADKEAGEDGKEANKKGSYVGVHATGFQDFLLRPELTRAI 66
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
DC F ++++V I +++LG D+LCQ
Sbjct: 67 RDCG--------FEHPSEVQQVCI------------------------PQSILGNDVLCQ 94
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSG+GKTAVFVL+TLQQL+ + V VLV+C+TRELA+QI EY RFSKYM +K VF
Sbjct: 95 AKSGLGKTAVFVLSTLQQLDPSPGEVSVLVICNTRELAYQIKNEYARFSKYMPEVKTEVF 154
Query: 216 FGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
+GG I KDEE LK + P IVV TPGR+ ALVR+K +N+ +K+F++DECDK+LE L
Sbjct: 155 YGGTQIAKDEEILKNKDTCPHIVVATPGRLNALVRDKVMNVKNVKNFVIDECDKVLENLS 214
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQ IFR +P KQVMMFSATLS E+R +CKKFM +P+E+YVD+EAKLTLHGLQQ+Y
Sbjct: 215 MRRDVQSIFRETPFQKQVMMFSATLSTEMRKICKKFMQNPLEIYVDNEAKLTLHGLQQYY 274
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
+KL E +KN+KL ELLD L+FNQV+IFVKSV R L+ LL+E NFP++SIH G+ Q+ER
Sbjct: 275 IKLTEADKNRKLSELLDSLDFNQVIIFVKSVKRAEYLNRLLNENNFPSISIHSGLPQQER 334
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+++Y+ FK+F+ KGL
Sbjct: 335 IERYKSFKEFNKRICVATDVLGRGIDVERINLAINYDLPNESAQYLHRVGRAGRFGTKGL 394
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
AI+F S + D IL +QDRFDV I+E P E +D STY+
Sbjct: 395 AISFISSDEDNTILEQIQDRFDVKIAEFPAEGVDASTYM 433
>gi|396463395|ref|XP_003836308.1| similar to ATP-dependent RNA helicase sub2 [Leptosphaeria maculans
JN3]
gi|312212861|emb|CBX92943.1| similar to ATP-dependent RNA helicase sub2 [Leptosphaeria maculans
JN3]
Length = 486
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 229/496 (46%), Positives = 300/496 (60%), Gaps = 97/496 (19%)
Query: 37 MADNDDLLDYEDEE--NTEQ-------------IVADGAGDALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE TE D AGD KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEEIAPTEAPANGSAAAAKSGLTAGDTAGDK-------KGSYVGIHSTG 53
Query: 82 FRDFLLKPEILRAIVDC--------------------WRILVATNLFGRGMDIERVNIVF 121
FRDFLLK E++RAI DC +VA + +++ F
Sbjct: 54 FRDFLLKDELVRAITDCGFEHPSEAPVAIYGLASKLYMNPIVAAQPIKKPFPLDK----F 109
Query: 122 NYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQL-ETTDSN 180
+P+D D + +A+LG D+LCQAKSG+GKTAVFVLATLQQ+ E +
Sbjct: 110 TPAVPQDCDWRTSALGVQQVTIPQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPG 169
Query: 181 V-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVV 237
+ +LVMCHTRELA+QI EY RF+K++ +KVGVF+GG P+ KD E L K +P I+V
Sbjct: 170 IATILVMCHTRELAYQIRNEYNRFAKFLPEVKVGVFYGGTPVLKDIELLGNKEFHPHIIV 229
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGRI ALVR+K L L+ LKHF+LDECDKML+Q +MR DVQ IFR++P KQVMMFSAT
Sbjct: 230 GTPGRINALVRDKHLRLANLKHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSAT 289
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
L+K++R +CKKFM +P+E+YVDDE KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV
Sbjct: 290 LNKDVRVICKKFMQNPLEIYVDDEKKLTLHGLQQYYMKLDEREKNRKLNDLLDSLEFNQV 349
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------- 404
+IFV+S RC L LL E NFP+ ++H G+ QEER+K+Y+EFK+F
Sbjct: 350 IIFVRSTLRCTELDKLLRECNFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGRG 409
Query: 405 ---------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431
KGL+I+F S D +L ++++RF VS
Sbjct: 410 IDVERINVAINYDMPDKADSYLHRVGRAGRFGTKGLSISFVSSPEDEAVLKSIEERFQVS 469
Query: 432 ISELP-DEIDLSTYIE 446
+ E P D I+ STY++
Sbjct: 470 LPEFPEDGINSSTYMD 485
>gi|254577481|ref|XP_002494727.1| ZYRO0A08272p [Zygosaccharomyces rouxii]
gi|238937616|emb|CAR25794.1| ZYRO0A08272p [Zygosaccharomyces rouxii]
Length = 443
Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/472 (46%), Positives = 294/472 (62%), Gaps = 104/472 (22%)
Query: 41 DDLLDYEDEENTEQIV--------------ADGA----GDALAKQKEVKGAYVSIHSSGF 82
+DLL+Y D E Q+ +GA GDA + KG+YV IHS+GF
Sbjct: 7 EDLLEYSDNEQEIQVANKAEGGADAAGGEGTNGAEGTNGDA-----DKKGSYVGIHSTGF 61
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
+DFLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 62 KDFLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP----- 91
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY R
Sbjct: 92 --QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLR 149
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKYM ++K VF+GG PI KD + LK P IVV TPGR+ ALVR+K ++LS +K+F
Sbjct: 150 FSKYMPDVKTAVFYGGTPISKDADLLKNKETAPHIVVATPGRLKALVRDKLIDLSHVKNF 209
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
++DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDD
Sbjct: 210 VIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDD 269
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
EAKLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFV+S R L+ LL+ NFP
Sbjct: 270 EAKLTLHGLQQYYIKLDEKEKNRKLAQLLDDLEFNQVIIFVRSTARANELTKLLNASNFP 329
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
A+++H M QEER+ +Y+ FKDF
Sbjct: 330 AITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLALNYDLTTEADQYLH 389
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S D ++LN +Q+RFDV I+E P+E ID STY+
Sbjct: 390 RVGRAGRFGTKGLAISFISSNEDEEVLNKIQERFDVKIAEFPEEGIDPSTYL 441
>gi|393247739|gb|EJD55246.1| P-loop containing nucleoside triphosphate hydrolase protein
[Auricularia delicata TFB-10046 SS5]
Length = 440
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 226/469 (48%), Positives = 282/469 (60%), Gaps = 90/469 (19%)
Query: 35 SKMADNDDLLDYEDEENTEQIVADGAGDALAKQKEV----------KGAYVSIHSSGFRD 84
S DN++L+DYE+++ A A+ K + IHS+GFRD
Sbjct: 2 SGALDNEELIDYEEDQEVTTTTNGAPAPAAAQNGAAAPAAAAADGDKKNFTGIHSTGFRD 61
Query: 85 FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
FLLKPE+LR+I D + E + V +P+
Sbjct: 62 FLLKPELLRSISD--------------LGFEHPSEVQQECIPQ----------------- 90
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
AV GMD+LCQAKSG GKTAVFVLATLQQLE + V V+V+CHTRELAFQI EY RF+
Sbjct: 91 -AVFGMDVLCQAKSGHGKTAVFVLATLQQLEPVNGEVSVIVLCHTRELAFQIRNEYIRFA 149
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM I+ VF+GG P+QKD E LK P I+V TPGR+ AL R+K L+ + +KHF+L
Sbjct: 150 KYMPEIRTSVFYGGTPVQKDAEILKDKAKCPHIIVATPGRLNALARDKVLDATHVKHFVL 209
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATL+K+IR CKKFM +P+E++VDDE
Sbjct: 210 DECDKMLEQLDMRRDVQEIFRVTPHHKQVMMFSATLAKDIRVTCKKFMTNPLEIFVDDET 269
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQHYVKL E KN+KL +LLD L+FNQVVIFVKSV R L LL E +FP++
Sbjct: 270 KLTLHGLQQHYVKLDEVAKNRKLNDLLDTLDFNQVVIFVKSVARANELDKLLKECHFPSI 329
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
IH G+ QEER+ +YQ+FK F
Sbjct: 330 CIHSGLPQEERITRYQQFKSFEKRILVATDIFGRGIDVERVNIVVNYDCPGDADSYLHRV 389
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S E D ++N +Q RF+V++SELP ID +Y+
Sbjct: 390 GRAGRFGTKGLAITFISSETDQDVMNQIQSRFEVAVSELPAHIDPKSYM 438
>gi|367003589|ref|XP_003686528.1| hypothetical protein TPHA_0G02585 [Tetrapisispora phaffii CBS 4417]
gi|357524829|emb|CCE64094.1| hypothetical protein TPHA_0G02585 [Tetrapisispora phaffii CBS 4417]
Length = 438
Score = 410 bits (1053), Expect = e-112, Method: Compositional matrix adjust.
Identities = 215/462 (46%), Positives = 295/462 (63%), Gaps = 89/462 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAG--------DALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DLL+Y D E Q+VAD A D + ++ KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQDIQVVADKAAENTETAAADEGVEGEDKKGSYVGIHSTGFKDFLLKPELS 66
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI+DC ++ P S+ H + +++ G D+
Sbjct: 67 RAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTDV 94
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM +K
Sbjct: 95 LCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYMPEVKT 154
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
VF+GG PI+ D + LK PQI+V TPGR+ ALVR+K ++LS +K+F++DECDK+LE
Sbjct: 155 AVFYGGTPIKNDADLLKNKETAPQIIVATPGRLKALVRDKLIDLSHVKNFVIDECDKVLE 214
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+L+MRRDVQ+IFR++P KQVMMFSATLS++IRP+C++F+ +P+E++VDDEAKLTLHGLQ
Sbjct: 215 ELDMRRDVQDIFRATPRDKQVMMFSATLSEDIRPICRRFLQNPLEIFVDDEAKLTLHGLQ 274
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y+K++E EKN+KL +LLD LEFNQV+IFVKS R L+ LL++ NFPA+++H M Q
Sbjct: 275 QYYIKIEEREKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNDSNFPAITVHGHMKQ 334
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
ER+ +Y+ FKDF
Sbjct: 335 AERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTTEADQYLHRVGRAGRFGT 394
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLA++F S D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 KGLAVSFVSSPEDEEVLGKIQERFDVKIAEYPEEGIDPSTYL 436
>gi|413948697|gb|AFW81346.1| hypothetical protein ZEAMMB73_015937 [Zea mays]
Length = 344
Score = 409 bits (1052), Expect = e-111, Method: Compositional matrix adjust.
Identities = 202/342 (59%), Positives = 246/342 (71%), Gaps = 46/342 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY++
Sbjct: 1 MDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLTE 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+KV VF+GG+ I+K ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML
Sbjct: 61 VKVAVFYGGVHIRKHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GMT
Sbjct: 181 VQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPSICIHSGMT 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +Y+ FK+ H
Sbjct: 241 QEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 301 TKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYM 342
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 304
>gi|378730355|gb|EHY56814.1| ATP-dependent RNA helicase sub2 [Exophiala dermatitidis NIH/UT8656]
Length = 441
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 226/471 (47%), Positives = 293/471 (62%), Gaps = 94/471 (19%)
Query: 37 MADNDDLLDYEDEE--NTEQIVADGAGDALAKQKEV-----------KGAYVSIHSSGFR 83
M+ +DL+DY DEE TE A GA + AK+ ++ KG+YV IHS+GFR
Sbjct: 1 MSAEEDLIDYSDEELQATETPAAAGATNGAAKKGDLTVTGGKAADKGKGSYVGIHSTGFR 60
Query: 84 DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
DFLLK E+LRAI DC F ++++ I
Sbjct: 61 DFLLKGELLRAITDCG--------FEHPSEVQQKCI------------------------ 88
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
+A+L +DILCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY RF
Sbjct: 89 PQALLSVDILCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYARF 148
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFI 261
SKY+ ++K VF+GG PIQKD E LK P I+VGTPGR+ ALVR+K L+L +K F+
Sbjct: 149 SKYLPDVKTAVFYGGTPIQKDIELLKNKETFPNIIVGTPGRLNALVRDKVLSLRNVKAFV 208
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATL EIRP+C+KFM +P+EV+VDDE
Sbjct: 209 LDECDKMLDQIDMRRDVQEIFRATPTEKQVMMFSATLPTEIRPICRKFMRNPLEVFVDDE 268
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ+ ++L E+EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+
Sbjct: 269 TKLTLHGLQQYSIRLSESEKNRKLNELLDSLEFNQVIIFVKSTLRATELDKLLRECNFPS 328
Query: 382 VSIHRGMTQEERLKKYQEFKDFH------------------------------------- 404
+++H G++QEER+K+Y+EFK+F+
Sbjct: 329 IAVHSGISQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYLHR 388
Query: 405 ---------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D ++L ++ RF+ + E P+ +D STY+
Sbjct: 389 VGRAGRFGTKGLSISFVSSEQDEQVLKEIERRFEAKVPEYPEGGVDSSTYM 439
>gi|410080890|ref|XP_003958025.1| hypothetical protein KAFR_0F02940 [Kazachstania africana CBS 2517]
gi|372464612|emb|CCF58890.1| hypothetical protein KAFR_0F02940 [Kazachstania africana CBS 2517]
Length = 443
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/467 (46%), Positives = 290/467 (62%), Gaps = 94/467 (20%)
Query: 41 DDLLDYEDEENTEQIVAD-------------GAGDALAKQKEVKGAYVSIHSSGFRDFLL 87
+DLL+Y D E Q+ A G + KG+YV IHS+GF+DFLL
Sbjct: 7 EDLLEYSDNEQEIQVDASNAAEAGNAAEGTTGVEGESTTDGDKKGSYVGIHSTGFKDFLL 66
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPE+ RAI+DC ++ P S+ H + +++
Sbjct: 67 KPELSRAIIDC-----------------------GFEHP--SEVQQHTIP-------QSI 94
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM
Sbjct: 95 HGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVICNARELAYQIRNEYLRFSKYM 154
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++K VF+GG P KD E LK P IVV TPGR+ ALVR+K ++LS +K+F++DEC
Sbjct: 155 PDVKTAVFYGGTPTSKDAEILKNKETAPHIVVATPGRLKALVRDKYIDLSHVKNFVIDEC 214
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLT
Sbjct: 215 DKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLT 274
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H
Sbjct: 275 LHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTARANELTKLLNASNFPAITVH 334
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
M Q ER+ +Y+ FKDF
Sbjct: 335 GHMKQAERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLSNEADQYLHRVGRA 394
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L+ +Q+RFDV I+E P+E ID STY+
Sbjct: 395 GRFGTKGLAISFVSSKEDEEVLSKIQERFDVKIAEFPEEGIDPSTYL 441
>gi|50309861|ref|XP_454944.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690098|sp|Q6CM95.1|SUB2_KLULA RecName: Full=ATP-dependent RNA helicase SUB2
gi|49644079|emb|CAH00031.1| KLLA0E21935p [Kluyveromyces lactis]
Length = 437
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 214/461 (46%), Positives = 294/461 (63%), Gaps = 88/461 (19%)
Query: 41 DDLLDYEDEENTEQI-------VADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
+DLL+Y D E Q+ A+G G++ AK + KG+YV IHS+GF+DFLLKPE+ R
Sbjct: 7 EDLLEYSDNEQEVQVDNKATEVNAEGNGESQAKDSDKKGSYVGIHSTGFKDFLLKPELSR 66
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI+DC ++ P S+ H + +++ G D+L
Sbjct: 67 AIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTDVL 94
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM ++K
Sbjct: 95 CQAKSGLGKTAVFVLSTLQQLDPVQGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKTA 154
Query: 214 VFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
VF+GG + D + L K P I+V TPGR+ ALVR+K ++LS +K+F++DECDK+LE+
Sbjct: 155 VFYGGTEYKNDIDLLSKKETVPHIIVATPGRLKALVRDKHIDLSHVKNFVIDECDKVLEE 214
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTLHGLQQ
Sbjct: 215 LDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQQ 274
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H M QE
Sbjct: 275 YYIKLNEKEKNRKLAQLLDDLEFNQVIIFVKSTVRANELTKLLNASNFPAITVHGHMKQE 334
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ER+ +Y+ FK+F K
Sbjct: 335 ERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPNEADQYLHRVGRAGRFGTK 394
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
GLAI+ S E+D ++L +Q+RFDV I+E P+E +D STY+
Sbjct: 395 GLAISMISSEDDEQVLAKIQERFDVKITEFPEEGVDPSTYL 435
>gi|218188433|gb|EEC70860.1| hypothetical protein OsI_02372 [Oryza sativa Indica Group]
gi|222618650|gb|EEE54782.1| hypothetical protein OsJ_02179 [Oryza sativa Japonica Group]
Length = 344
Score = 409 bits (1050), Expect = e-111, Method: Compositional matrix adjust.
Identities = 203/342 (59%), Positives = 245/342 (71%), Gaps = 46/342 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL++LQQ++ V LV+CHTRELA+QI E+ERFSKY+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSSLQQIDPVAGQVGALVLCHTRELAYQICHEFERFSKYLPE 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+KV VF+GG+ I+K ++ LK P IVVGTPGRILAL R K L+L ++HFILDECDKML
Sbjct: 61 VKVAVFYGGVHIKKHKDLLKNDCPHIVVGTPGRILALAREKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL
Sbjct: 121 DSLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFPA+SIH GMT
Sbjct: 181 VQHYIKLSEAEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLCECNFPAISIHSGMT 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +Y+ FK+ H
Sbjct: 241 QEERLTRYKNFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S +D+ +LN VQ+RF+V I ELP++ID STY+
Sbjct: 301 TKGLAITFVSSASDSDVLNQVQERFEVDIKELPEQIDTSTYM 342
Score = 86.7 bits (213), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +D+YLHRV RAGRFGTK +
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADSYLHRVGRAGRFGTKGL 304
>gi|406605046|emb|CCH43517.1| ATP-dependent RNA helicase [Wickerhamomyces ciferrii]
Length = 425
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 213/454 (46%), Positives = 286/454 (62%), Gaps = 86/454 (18%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LL+Y + E+ IV + ++ KG+YV IHS+GF+DFLLKPE+ RAIVDC
Sbjct: 7 EELLEYSEPEDN--IVQESTTAEAKDGEDKKGSYVGIHSTGFKDFLLKPELSRAIVDC-- 62
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
++ P + +++ G D+LCQAKSG+
Sbjct: 63 ---------------------GFEHPSEVCI------------PQSIHGTDVLCQAKSGL 89
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL+TLQQL+ V LV+CHTRELA+QI EY RFSKYM ++K VF+GG
Sbjct: 90 GKTAVFVLSTLQQLDPVPGEVSTLVICHTRELAYQIRNEYLRFSKYMPDVKTAVFYGGTD 149
Query: 221 IQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
I+KD E LK + P IVVGTPGR+ AL+R K + L+ LK+F++DECDK+LE ++MRRDV
Sbjct: 150 IKKDAELLKNKDTAPHIVVGTPGRLNALLREKYIRLNNLKNFVIDECDKVLEAVDMRRDV 209
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEIFR++PH KQVM FSATLS+EIRP+CKKF+ +P+E+YVDDEAKLTLHGLQQ Y+KL E
Sbjct: 210 QEIFRATPHEKQVMFFSATLSQEIRPICKKFLQNPLEIYVDDEAKLTLHGLQQFYIKLAE 269
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
EKN++L +LLD LEFNQV+IFVKS R L+ +L+ NFP++++H G+ QEER+ +Y+
Sbjct: 270 REKNRRLADLLDSLEFNQVIIFVKSTARADELNRILTASNFPSIAVHSGIPQEERIARYK 329
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
FKDF+ KGLA++F
Sbjct: 330 SFKDFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGLAVSFV 389
Query: 413 SDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
S E D +L +Q+RFDV I+E P+ +D STY+
Sbjct: 390 STEEDETVLGKIQERFDVKIAEFPEGGVDPSTYM 423
>gi|403213746|emb|CCK68248.1| hypothetical protein KNAG_0A05850 [Kazachstania naganishii CBS
8797]
Length = 449
Score = 408 bits (1049), Expect = e-111, Method: Compositional matrix adjust.
Identities = 210/424 (49%), Positives = 279/424 (65%), Gaps = 81/424 (19%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
KG+YV IHS+GF+DFLLKPE+ RAI+DC ++ P S+
Sbjct: 56 KGSYVGIHSTGFKDFLLKPELSRAIIDC-----------------------GFEHP--SE 90
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
H + +++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ R
Sbjct: 91 VQQHTIP-------QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPIPGEVSVVVICNAR 143
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH--NPQIVVGTPGRILALVR 248
ELA+QI EY RFSKYM ++K VF+GG PI KD E LK +P IVV TPGR+ ALVR
Sbjct: 144 ELAYQIRNEYLRFSKYMPDVKTAVFYGGTPINKDAELLKNKETSPHIVVATPGRLKALVR 203
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
+K ++LS +K+F++DECDK+LE+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++
Sbjct: 204 DKMIDLSHVKNFVIDECDKVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRR 263
Query: 309 FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
F+ +P+E++VDDEAKLTLHGLQQ+Y KL+E EKN+KL +LLD LEFNQV+IFVKS R
Sbjct: 264 FLQNPLEIFVDDEAKLTLHGLQQYYTKLEEREKNRKLAQLLDDLEFNQVIIFVKSTNRAN 323
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------ 404
L+ LL+E NFPA+++H M QEER+ +Y+ FKDF
Sbjct: 324 ELTKLLNESNFPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAIN 383
Query: 405 ----------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDL 441
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID
Sbjct: 384 YDLPSEADQYLHRVGRAGRFGTKGLAISFISSKEDEEVLAKIQERFDVKITEFPEEGIDP 443
Query: 442 STYI 445
STY+
Sbjct: 444 STYL 447
>gi|452003765|gb|EMD96222.1| hypothetical protein COCHEDRAFT_1167233 [Cochliobolus
heterostrophus C5]
Length = 438
Score = 408 bits (1048), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 295/469 (62%), Gaps = 91/469 (19%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE N A G A + KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEEIQPTEAPANGGAAAAKGGLAAGDAAGDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
E++RAI DC F ++++V I +A+L
Sbjct: 61 DELVRAITDCG--------FEHPSEVQQVTI------------------------PQAIL 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNV-YVLVMCHTRELAFQISKEYERFSKY 206
G D+LCQAKSG+GKTAVFVLATLQQ+ E + V +LVMCHTRELA+QI EY RF+K+
Sbjct: 89 GNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVATILVMCHTRELAYQIRNEYNRFAKF 148
Query: 207 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ ++KVGVF+GG P+QKD E L K +P I+VGTPGRI ALVR+K L L+ LKHF+LDE
Sbjct: 149 LPDVKVGVFYGGTPVQKDIELLSNKDTHPHIIVGTPGRINALVRDKHLRLANLKHFVLDE 208
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKML+Q +MR DVQ IFR++P KQVMMFSATL+K++R VCKKFM +P+E+YVDDE KL
Sbjct: 209 CDKMLDQPDMRNDVQSIFRATPQHKQVMMFSATLNKDVRVVCKKFMQNPLEIYVDDEKKL 268
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YVKL E EKN+KL +LLD LEFNQV+IFV+S RC L LL E NFP+ ++
Sbjct: 269 TLHGLQQYYVKLDEKEKNRKLNDLLDNLEFNQVIIFVRSTLRCSELDKLLRECNFPSTAV 328
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G++QEER+K+Y+EFK+F
Sbjct: 329 HSGISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGR 388
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYIE 446
KGL+I+F S +D +L ++++RF V + E P D ++ +TY++
Sbjct: 389 AGRFGTKGLSISFVSSPDDEAVLKSIEERFQVELPEFPEDGVNSATYMD 437
>gi|149446031|ref|XP_001516247.1| PREDICTED: spliceosome RNA helicase DDX39B-like, partial
[Ornithorhynchus anatinus]
Length = 289
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 215/323 (66%), Positives = 242/323 (74%), Gaps = 37/323 (11%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 59 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQVMMFSATLSKE P ++F PME++VDDE KLTLHGLQQ+Y
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKENPPXTRRFSQSPMEIFVDDETKLTLHGLQQYY 266
Query: 334 VKLKENEKNKKLFELLDVLEFNQ 356
VKLK+NEKN+KLF+LLDVLEFNQ
Sbjct: 267 VKLKDNEKNRKLFDLLDVLEFNQ 289
>gi|210075100|ref|XP_499972.2| YALI0A11157p [Yarrowia lipolytica]
gi|218551749|sp|Q6CH90.2|SUB2_YARLI RecName: Full=ATP-dependent RNA helicase SUB2
gi|199424876|emb|CAG83901.2| YALI0A11157p [Yarrowia lipolytica CLIB122]
Length = 441
Score = 407 bits (1047), Expect = e-111, Method: Compositional matrix adjust.
Identities = 217/465 (46%), Positives = 288/465 (61%), Gaps = 92/465 (19%)
Query: 41 DDLLDYEDEEN----TEQIVADGAGDALAKQKEVK-------GAYVSIHSSGFRDFLLKP 89
++LLDY D E + + + GDA A+ VK G+YV IHS+GFRDFLLKP
Sbjct: 7 EELLDYSDSEEIALPSTTVESGSNGDAKAETTTVKEENTEQKGSYVGIHSTGFRDFLLKP 66
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAIVDC F ++++V I +++LG
Sbjct: 67 ELLRAIVDCG--------FEHPSEVQQVCI------------------------PQSILG 94
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
D+LCQAK+G+GKTAVFVL+TLQQLE V+V+CHTRELA+QI EY RFSKY+ +
Sbjct: 95 TDVLCQAKAGVGKTAVFVLSTLQQLEPVPGECSVVVLCHTRELAYQIMNEYARFSKYLPD 154
Query: 210 IKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
+K VF+GG PIQKD E + K +P ++V TPGR+ ALVR+K L L +K F++DECDK
Sbjct: 155 VKTAVFYGGSPIQKDIELIQNKETSPHVIVATPGRLHALVRDKHLRLGNVKTFVIDECDK 214
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
+L+Q++MRRDVQEIFR +P KQVMMFSATLS+EIRP+CKKFM P+E+ VDDE KLTLH
Sbjct: 215 VLDQIDMRRDVQEIFRVTPRQKQVMMFSATLSQEIRPICKKFMSSPLEILVDDEGKLTLH 274
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+YV ++E KN+KL +LLD LEFNQV+IFVKS +R LS +L+ FP ++H G
Sbjct: 275 GLQQYYVDVEEKSKNRKLGDLLDNLEFNQVIIFVKSTSRANGLSQVLNANGFPCTAVHSG 334
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
+ QEER+ +Y+EFK+F
Sbjct: 335 IPQEERIARYKEFKEFKKRICVSTDVFGRGIDIERINLAINYDLPAEADQYLHRVGRAGR 394
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S D ++L +Q+RF+V+I+ P E +D STY+
Sbjct: 395 FGTKGLAISFVSTPEDKEVLAKIQERFEVNIAPYPAEGVDPSTYM 439
>gi|412985431|emb|CCO18877.1| ATP-dependent RNA helicase DDX39 [Bathycoccus prasinos]
Length = 429
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 209/418 (50%), Positives = 265/418 (63%), Gaps = 78/418 (18%)
Query: 74 YVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYL 133
YV +HS+GFRDFLLKPE+LRAIVDC E + V + +P+
Sbjct: 42 YVGMHSTGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHECIPQ------ 81
Query: 134 HRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
A+LGMD+LCQAKSGMGKTAVFV+ LQQL+ + V +++CHTRELA
Sbjct: 82 ------------AILGMDVLCQAKSGMGKTAVFVITVLQQLDPSPGEVGAVIICHTRELA 129
Query: 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLN 253
+QIS E RFS +M N+K V +GG+ I+ E LK + P ++V TPGR+ L + ++
Sbjct: 130 YQISHEMTRFSAHMPNVKCAVIYGGVNIKTQREELKANMPNVIVATPGRLKVLAQEGTIS 189
Query: 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
L HFILDECDK LE+L+MR DVQEIF+ +PH KQVMMF+ATLSKE+RPVCKKFM+DP
Sbjct: 190 LKKCAHFILDECDKCLEKLDMRADVQEIFKLTPHDKQVMMFTATLSKELRPVCKKFMNDP 249
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
ME++VDDE KLTLHGL QHYVKL+E EKN+KL +LLD L+FNQVVIFV SV RC AL L
Sbjct: 250 MEIFVDDETKLTLHGLVQHYVKLEEQEKNRKLTDLLDALQFNQVVIFVSSVARCTALDKL 309
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------- 404
+ E NFP+++I R M+QEERL +YQ FKD +
Sbjct: 310 MQECNFPSIAISRAMSQEERLLRYQSFKDGNKRILVATDLVARGIDIERVNIVINYDMPG 369
Query: 405 -----------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI+F S D+ +L+ V +RF+VSI LPDEID S+Y+
Sbjct: 370 DADTYLHRVGRAGRFGTKGLAISFVSSSEDSDVLSKVHERFEVSIDGLPDEIDTSSYM 427
>gi|451855761|gb|EMD69052.1| hypothetical protein COCSADRAFT_31829 [Cochliobolus sativus ND90Pr]
Length = 438
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 225/469 (47%), Positives = 293/469 (62%), Gaps = 91/469 (19%)
Query: 37 MADNDDLLDYEDEE--NTEQIVADGAGDALAKQKEV------KGAYVSIHSSGFRDFLLK 88
M+ +DL+DY DEE TE A A KG+YV IHS+GFRDFLLK
Sbjct: 1 MSHEEDLIDYSDEEIQPTEAPANGDAAAAKGGLAAGDAAGDKKGSYVGIHSTGFRDFLLK 60
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
E++RAI DC F ++++V I +A+L
Sbjct: 61 DELVRAITDCG--------FEHPSEVQQVTI------------------------PQAIL 88
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNV-YVLVMCHTRELAFQISKEYERFSKY 206
G D+LCQAKSG+GKTAVFVLATLQQ+ E + V +LVMCHTRELA+QI EY RF+K+
Sbjct: 89 GNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVATILVMCHTRELAYQIRNEYNRFAKF 148
Query: 207 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ ++KVGVF+GG P+QKD E L K +P I+VGTPGRI ALVR+K L L+ LKHF+LDE
Sbjct: 149 LPDVKVGVFYGGTPVQKDIELLSNKDTHPHIIVGTPGRINALVRDKHLRLANLKHFVLDE 208
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKML+Q +MR DVQ IFR++P KQVMMFSATL+K++R VCKKFM +P+E+YVDDE KL
Sbjct: 209 CDKMLDQPDMRNDVQSIFRATPQHKQVMMFSATLNKDVRVVCKKFMQNPLEIYVDDEKKL 268
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YVKL E EKN+KL +LLD LEFNQV+IFV+S RC L LL E NFP+ ++
Sbjct: 269 TLHGLQQYYVKLDEKEKNRKLNDLLDNLEFNQVIIFVRSTLRCSELDKLLRECNFPSTAV 328
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G++QEER+K+Y+EFK+F
Sbjct: 329 HSGISQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADAYLHRVGR 388
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYIE 446
KGL+I+F S D +L ++++RF V + E P D ++ +TY++
Sbjct: 389 AGRFGTKGLSISFVSSPEDEAVLKSIEERFQVELPEFPEDGVNSATYMD 437
>gi|444317132|ref|XP_004179223.1| hypothetical protein TBLA_0B08880 [Tetrapisispora blattae CBS 6284]
gi|387512263|emb|CCH59704.1| hypothetical protein TBLA_0B08880 [Tetrapisispora blattae CBS 6284]
Length = 442
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 212/466 (45%), Positives = 290/466 (62%), Gaps = 93/466 (19%)
Query: 41 DDLLDYEDEE------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
+DLL+Y D E ++E + G+A E KG+YV IHS+GF+DFLLK
Sbjct: 7 EDLLEYSDNEQEIQIDANANATSSEAVTTSADGEAKDADAEKKGSYVGIHSTGFKDFLLK 66
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PE+ RAI+DC F ++++ I +++
Sbjct: 67 PELSRAIIDCG--------FEHPSEVQQSTI------------------------PQSIH 94
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+LCQAKSG+GKTAVFVL++LQQL+ V+V+C+ RELA+QI EY RFSKYM
Sbjct: 95 GTDVLCQAKSGLGKTAVFVLSSLQQLDPVPGEASVVVICNARELAYQIRNEYLRFSKYMP 154
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++K VF+GG PI KD E LK + P IVV TPGR+ ALV++K ++LS +K+FI+DECD
Sbjct: 155 DVKTAVFYGGTPINKDAELLKNKDTAPHIVVATPGRLKALVKDKLIDLSHVKNFIIDECD 214
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
K+LE+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTL
Sbjct: 215 KVLEELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTL 274
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ ++KL E++KN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H
Sbjct: 275 HGLQQFFIKLSESDKNRKLAQLLDDLEFNQVIIFVKSTKRANELTKLLNASNFPAITVHG 334
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
M QEER+ +Y+ FKDF
Sbjct: 335 SMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAG 394
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S D ++L +Q+RFDV I+E P E I+ S+Y+
Sbjct: 395 RFGTKGLAISFVSSTEDEEVLAKIQERFDVKIAEFPAEGIESSSYL 440
>gi|169624724|ref|XP_001805767.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
gi|118577978|sp|Q0TXZ2.1|SUB2_PHANO RecName: Full=ATP-dependent RNA helicase SUB2
gi|111055878|gb|EAT76998.1| hypothetical protein SNOG_15623 [Phaeosphaeria nodorum SN15]
Length = 438
Score = 406 bits (1043), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/476 (47%), Positives = 290/476 (60%), Gaps = 105/476 (22%)
Query: 37 MADNDDLLDYEDEENTEQIVA---------------DGAGDALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE V D +G E KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEEIQPTEVPANGDAAAAKGGLAAPDASG-------EKKGSYVGIHSTG 53
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E++RAI DC F ++++V I
Sbjct: 54 FRDFLLKDELVRAITDCG--------FEHPSEVQQVTI---------------------- 83
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNVY-VLVMCHTRELAFQISKE 199
+A+LG D+LCQAKSG+GKTAVFVLATLQQ+ E + V +LVMCHTRELA+QI E
Sbjct: 84 --PQAILGNDVLCQAKSGLGKTAVFVLATLQQMDEKPEPGVASILVMCHTRELAYQIRNE 141
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLL 257
Y RF+K++ ++KVGVF+GG P+ KD E L K +P I+VGTPGRI ALVR++ L L+ L
Sbjct: 142 YNRFAKFLPDVKVGVFYGGTPVAKDIELLSNKDTHPHIIVGTPGRINALVRDRHLRLANL 201
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHF+LDECDKML+Q +MR DVQ IFR++P KQVMMFSATLSKEIR VCKKFM +P+E+Y
Sbjct: 202 KHFVLDECDKMLDQPDMRNDVQAIFRATPAHKQVMMFSATLSKEIRAVCKKFMQNPLEIY 261
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE KLTLHGLQQ YVKL E EKN+KL +LLD LEFNQV+IFV+S RC L LL E
Sbjct: 262 VDDEKKLTLHGLQQFYVKLDEREKNRKLNDLLDNLEFNQVIIFVRSTLRCTELDKLLREC 321
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+ ++H G+ QEER+K+Y+EFK+F
Sbjct: 322 NFPSTAVHSGIGQEERIKRYKEFKEFQTRICVSTDIFGRGIDVERINVAINYDMPDKADA 381
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYIE 446
KGL+I+F S ++D +L +++RF I E P D I ++Y++
Sbjct: 382 YLHRVGRAGRFGTKGLSISFVSSQDDEAVLKAIEERFAAEIPEFPEDGISSASYMD 437
>gi|452987512|gb|EME87267.1| hypothetical protein MYCFIDRAFT_71177 [Pseudocercospora fijiensis
CIRAD86]
Length = 428
Score = 405 bits (1042), Expect = e-110, Method: Compositional matrix adjust.
Identities = 211/457 (46%), Positives = 281/457 (61%), Gaps = 94/457 (20%)
Query: 37 MADNDDLLDYEDEE--------------------NTEQIVADGAGDALAKQKEVKGAYVS 76
M+ +DL+DY DEE + G D + KG+YV
Sbjct: 1 MSAEEDLIDYSDEELQPTDGAAGATGAAAANGDAKKGDLTVSGGAD------KTKGSYVG 54
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
IHS+ FRDFLLKPE+L+AI DC F ++++V I
Sbjct: 55 IHSTSFRDFLLKPELLKAITDCG--------FEHPSEVQQVCI----------------- 89
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+A+LG D+LCQAKSG+GKTAVFVL+TLQQ+E V VLVMCHTRELAFQI
Sbjct: 90 -------PQAILGTDVLCQAKSGLGKTAVFVLSTLQQIEPVAGEVSVLVMCHTRELAFQI 142
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNL 254
EY+RFSKYM ++ VF+GG+PI ++E+ L KT +P IVV TPGR+ ALVR KKL L
Sbjct: 143 KNEYQRFSKYMPEVRTEVFYGGVPITENEKILRDKTTHPHIVVATPGRLNALVREKKLRL 202
Query: 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314
+ F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS + +P+CKKFM +P+
Sbjct: 203 GSVSRFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSAQTKPICKKFMQNPL 262
Query: 315 EVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
E+YVDDEAKLTLHGLQQ+YVKL E EKN++L +LLD L +NQV+IFVK+ R L+ LL
Sbjct: 263 EIYVDDEAKLTLHGLQQYYVKLTEEEKNRRLNDLLDTLSYNQVIIFVKNTIRATELNRLL 322
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------------ 404
E NFP++++H + Q++R+K+YQ FK++
Sbjct: 323 VECNFPSITVHSNLPQDDRIKRYQAFKNYDKRICVSTDVFGRESIAQAADTYLHRVGRAG 382
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPD 437
KG+AI+F S + DA +L ++ RF+ + E P+
Sbjct: 383 RFGTKGIAISFVSSDRDADVLKAIEARFEKKVDEYPE 419
>gi|357529057|sp|Q5ASK8.2|SUB2_EMENI RecName: Full=ATP-dependent RNA helicase sub2
Length = 434
Score = 405 bits (1041), Expect = e-110, Method: Compositional matrix adjust.
Identities = 221/473 (46%), Positives = 286/473 (60%), Gaps = 104/473 (21%)
Query: 37 MADNDDLLDYEDEE---------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE N Q DG + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTATPAANGGQAKKDGELTVTGGRADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY
Sbjct: 91 --PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG PIQKD E L + P I+VGTPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKA 208
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+++RP+CKKFM +P+EVYVD
Sbjct: 209 FVLDECDKMLDQIDMRRDVQEIFRATPTDKQVMMFSATLSQDVRPICKKFMRNPLEVYVD 268
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NF
Sbjct: 269 DDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRECNF 328
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------- 404
P++++H G +Y+EFK+F+
Sbjct: 329 PSIAVHSG--------RYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADSYL 380
Query: 405 -----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S D ++L +++ RF+V++ E P+E +D STY+
Sbjct: 381 HRVGRAGRFGTKGLSISFVSTPEDEQVLKDIEKRFEVALPEYPEEGVDSSTYM 433
>gi|45188133|ref|NP_984356.1| ADR260Cp [Ashbya gossypii ATCC 10895]
gi|74694117|sp|Q759L6.1|SUB2_ASHGO RecName: Full=ATP-dependent RNA helicase SUB2
gi|44982950|gb|AAS52180.1| ADR260Cp [Ashbya gossypii ATCC 10895]
gi|374107571|gb|AEY96479.1| FADR260Cp [Ashbya gossypii FDAG1]
Length = 438
Score = 405 bits (1040), Expect = e-110, Method: Compositional matrix adjust.
Identities = 213/462 (46%), Positives = 295/462 (63%), Gaps = 89/462 (19%)
Query: 41 DDLLDYEDEE------NTE--QIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DLL+Y D E NT+ ++ +G A K + KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQEIQVDNTKATEVAGNGEEAADGKDGDKKGSYVGIHSTGFKDFLLKPELS 66
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI+DC ++ P S+ H + +++ G D+
Sbjct: 67 RAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTDV 94
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM ++K
Sbjct: 95 LCQAKSGLGKTAVFVLSTLQQLDPVPGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKT 154
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
VF+GG +KD E LK + P IVV TPGR+ ALVR+ ++LS +K+F++DECDK+LE
Sbjct: 155 AVFYGGTDTRKDIELLKNKDTAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLE 214
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTLHGLQ
Sbjct: 215 ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQ 274
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y++L+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H M Q
Sbjct: 275 QYYIRLEEREKNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMRQ 334
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EER+ +Y+ FK+F
Sbjct: 335 EERIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGT 394
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+ S ++D ++L +Q+RFDV I+E P+E +D STY+
Sbjct: 395 KGLAISLVSSKDDEEVLAKIQERFDVKITEFPEEGVDPSTYL 436
>gi|357436965|ref|XP_003588758.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
gi|355477806|gb|AES59009.1| DEAD-box ATP-dependent RNA helicase [Medicago truncatula]
Length = 344
Score = 404 bits (1038), Expect = e-110, Method: Compositional matrix adjust.
Identities = 200/342 (58%), Positives = 245/342 (71%), Gaps = 46/342 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD+LCQAKSGMGKTAVFVL+TLQQ++ V L++CHTRELA+QI E+ERFS Y+++
Sbjct: 1 MDVLCQAKSGMGKTAVFVLSTLQQIDPVPGQVSALILCHTRELAYQICHEFERFSTYLAD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML
Sbjct: 61 LKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALARDKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E L+MR+DVQ+IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL
Sbjct: 121 ESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QHY+KLKE EKN+KL +LLD L+FNQVVIFVKSV+R L LL E NFP++ IH GM+
Sbjct: 181 VQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSGMS 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERLK+Y+ FK+ H
Sbjct: 241 QEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S +D +LNNVQ RF+V I +LP++ID STY+
Sbjct: 301 TKGLAITFVSCSSDVDVLNNVQSRFEVDIKQLPEQIDTSTYM 342
Score = 88.2 bits (217), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 39/57 (68%), Positives = 46/57 (80%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK + + C +
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGLAITFVSCSS 313
>gi|350637145|gb|EHA25503.1| hypothetical protein ASPNIDRAFT_56669 [Aspergillus niger ATCC 1015]
Length = 444
Score = 404 bits (1037), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/475 (47%), Positives = 292/475 (61%), Gaps = 98/475 (20%)
Query: 37 MADNDDLLDYEDEE--------NTEQIVADG---AGDAL--AKQKEVKGAYVSIHSSGFR 83
M+ +DL+DY DEE T ++G GD + + KG+YV IHS+GFR
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTAAPASNGEAKKGDLTVSGGRPDKKGSYVGIHSTGFR 60
Query: 84 DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
DFLLK E+LRAI DC F ++++V I
Sbjct: 61 DFLLKEELLRAITDCG--------FEHPSEVQQVCI------------------------ 88
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY RF
Sbjct: 89 PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARF 148
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
SKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+ ALVR+KKL+L +K F+
Sbjct: 149 SKYLPDVKTAVFYGGTPIQKDVELLSNKESYPNIVVGTPGRLNALVRDKKLSLRNVKAFV 208
Query: 262 LDECDKMLEQLE----MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
LDECDKML+Q+ +R EIFR++P KQVMMFSATLS+EIRPVCKKFM +P+EVY
Sbjct: 209 LDECDKMLDQIGEFIYVRLSYAEIFRATPADKQVMMFSATLSQEIRPVCKKFMRNPLEVY 268
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDD+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E
Sbjct: 269 VDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTLRANELDKLLREC 328
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 329 NFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPADADS 388
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E+D K+L +++ RF+V++ E P+ +D STY+
Sbjct: 389 YLHRVGRAGRFGTKGLSISFVSTEDDEKVLKDIEKRFEVALPEYPEGGVDSSTYM 443
>gi|443925691|gb|ELU44467.1| ATP-dependent RNA helicase SUB2 [Rhizoctonia solani AG-1 IA]
Length = 1773
Score = 403 bits (1036), Expect = e-110, Method: Compositional matrix adjust.
Identities = 226/499 (45%), Positives = 281/499 (56%), Gaps = 127/499 (25%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILRAIVDCW 99
++L+DYED+ + A E K AY ++H++GFRDFLLKPE+LRAI D
Sbjct: 9 EELIDYEDDHDVSLTTGANGAAAAPADGEKEKKAYTNVHTTGFRDFLLKPELLRAISD-- 66
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
+ E + V +P+ AVLGMD+LCQAKSG
Sbjct: 67 ------------LGFEHPSEVQQECIPQ------------------AVLGMDVLCQAKSG 96
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
GKTAVFVLATLQQLE D V V+V+CHTRELA+QI EY RFS+YM +++ GV FGG
Sbjct: 97 HGKTAVFVLATLQQLEPVDGEVSVIVLCHTRELAYQIRNEYTRFSRYMPDVRTGVVFGGT 156
Query: 220 PIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL----- 272
P+ KD E LK T P I+V TPGR+ AL R+K L+ +KHF+LDECDKMLEQL
Sbjct: 157 PVAKDIELLKDKTKCPHIIVATPGRLNALARDKHLDPKKVKHFVLDECDKMLEQLAPIGG 216
Query: 273 -----------------------------------------EMRRDVQEIFRSSPHTKQV 291
MRRDVQEIFR +PH KQV
Sbjct: 217 NPFDWSFYALQCVDDAATNLDSIDAVNYIDALSLEQGLKHIHMRRDVQEIFRVTPHHKQV 276
Query: 292 MMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV 351
MMFSATLSK+IR CKKFM +P+E+++DDE+KLTLHGLQQHY+ L+E KN+KL +LLD
Sbjct: 277 MMFSATLSKDIRVTCKKFMANPLEIFIDDESKLTLHGLQQHYINLEEVAKNRKLNDLLDQ 336
Query: 352 LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------- 404
LEFNQVVIFVKSV+R L+ LL+ NFP++ IH G+ QEER+ +YQ FK F
Sbjct: 337 LEFNQVVIFVKSVSRANELNKLLNSCNFPSICIHSGLNQEERINRYQSFKSFEKRILVAT 396
Query: 405 ---------------------------------------KGLAITFASDENDAKILNNVQ 425
KGLAITF S D ++L +Q
Sbjct: 397 DIFGRGIDVERVNIVVNYDAPSEADSYLHRVGRAGRFGTKGLAITFVSSPADTEVLQQIQ 456
Query: 426 DRFDVSISELPDEIDLSTY 444
RF+V ++ELPD ID STY
Sbjct: 457 GRFEVKVTELPDTIDSSTY 475
>gi|449441916|ref|XP_004138728.1| PREDICTED: DEAD-box ATP-dependent RNA helicase 56-like [Cucumis
sativus]
Length = 344
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 201/342 (58%), Positives = 242/342 (70%), Gaps = 46/342 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVSALVLCHTRELAYQICHEFERFSTYLPD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+KV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K L+L ++HFILDECDKML
Sbjct: 61 LKVAVFYGGVNIKIHKDLLKNECPHIVVGTPGRILALSRDKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV R L LL E NFP++ IH GM+
Sbjct: 181 VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVNRAAELDKLLVECNFPSICIHSGMS 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +Y+ FK+ H
Sbjct: 241 QEERLTRYKGFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S D+ +LNNVQ+RF+V I ELP++ID STY+
Sbjct: 301 TKGLAITFVSSAADSDVLNNVQERFEVDIKELPEQIDTSTYM 342
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 304
>gi|363754107|ref|XP_003647269.1| hypothetical protein Ecym_6049 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890906|gb|AET40452.1| hypothetical protein Ecym_6049 [Eremothecium cymbalariae
DBVPG#7215]
Length = 438
Score = 402 bits (1033), Expect = e-109, Method: Compositional matrix adjust.
Identities = 212/462 (45%), Positives = 291/462 (62%), Gaps = 89/462 (19%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALA--------KQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DLL+Y D E Q+ + +A+ K + KG+YV IHS+GF+DFLLKPE+
Sbjct: 7 EDLLEYSDNEQEIQVENTKSAEAVGGVEESGEGKDTDKKGSYVGIHSTGFKDFLLKPELS 66
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI+DC ++ P S+ H + +++ G D+
Sbjct: 67 RAIIDC-----------------------GFEHP--SEVQQHTIP-------QSIHGTDV 94
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFSKYM ++K
Sbjct: 95 LCQAKSGLGKTAVFVLSTLQQLDPVAGEVSVVVLCNARELAYQIRNEYLRFSKYMPDVKT 154
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
VF+GG +KD E LK P IVV TPGR+ ALVR+ ++LS +K+F++DECDK+LE
Sbjct: 155 AVFYGGTDTRKDIELLKNKETAPHIVVATPGRLKALVRDNNIDLSHVKNFVIDECDKVLE 214
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+L+MRRDVQ+IFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEAKLTLHGLQ
Sbjct: 215 ELDMRRDVQDIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEAKLTLHGLQ 274
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ NFPA+++H M Q
Sbjct: 275 QYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTLRANELTKLLNASNFPAITVHGHMKQ 334
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
E+R+ +Y+ FK+F
Sbjct: 335 EKRIARYKAFKEFEKRICVSTDVFGRGIDIERINLAINYDMPSEADQYLHRVGRAGRFGT 394
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+ S + D +IL +Q+RFDV I+E P+E +D STY+
Sbjct: 395 KGLAISLVSSKEDEEILAKIQERFDVKITEFPEEGVDPSTYL 436
>gi|21619414|gb|AAH32128.1| DDX39 protein [Homo sapiens]
gi|119604823|gb|EAW84417.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_c [Homo
sapiens]
Length = 322
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 213/348 (61%), Positives = 250/348 (71%), Gaps = 51/348 (14%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
VKLK++EKN+KLF+LLDVLEFNQ V TL + Q FPA
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQPV-------------TLSAVQGFPA 300
>gi|147769174|emb|CAN76234.1| hypothetical protein VITISV_030204 [Vitis vinifera]
Length = 383
Score = 402 bits (1032), Expect = e-109, Method: Compositional matrix adjust.
Identities = 205/357 (57%), Positives = 250/357 (70%), Gaps = 35/357 (9%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYD 124
A + K YV IHSSGFRDFLLKPE+LR+IVD ++
Sbjct: 32 AAGESAKKGYVGIHSSGFRDFLLKPELLRSIVDS-----------------------GFE 68
Query: 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVL 184
P + G+ +A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E V L
Sbjct: 69 HPSE-----------GKCIPQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPVAGQVAAL 117
Query: 185 VMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
V+CHTRELA+QI E+ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRIL
Sbjct: 118 VLCHTRELAYQICHEFERFSTYLPDIKVAVFYGGVSIKTHKDLLKNECPHIVVGTPGRIL 177
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL R+K L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRP
Sbjct: 178 ALARDKDLGLKHVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRP 237
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VCKKFM DPME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV
Sbjct: 238 VCKKFMQDPMEIYVDDEAKLTLHGLVQHYIKLSELEKNRKLNDLLDALDFNQVVIFVKSV 297
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK-DFHKGLAITFASDENDAKI 420
+R L+ LL E NFP++ IH GM QEE L K + + D+ + A F +D ++
Sbjct: 298 SRAAELNKLLMECNFPSICIHSGMPQEESLYKGRSLQLDWWRLDARCFREGVHDGEV 354
>gi|167522271|ref|XP_001745473.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163775822|gb|EDQ89444.1| predicted protein [Monosiga brevicollis MX1]
Length = 431
Score = 401 bits (1030), Expect = e-109, Method: Compositional matrix adjust.
Identities = 229/467 (49%), Positives = 286/467 (61%), Gaps = 96/467 (20%)
Query: 37 MAD---NDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MAD ++DLL+Y +E E G D +AK K G+Y ++ FRDFLLKPE+LR
Sbjct: 1 MADIHNDEDLLEYTEEAEPETT---GTKD-VAKDK---GSYAGAQTAVFRDFLLKPELLR 53
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI +C F ++++ I +A+LG D+L
Sbjct: 54 AITECG--------FEHPSEVQQECI------------------------PQAILGGDVL 81
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI-KV 212
CQAKSGMGKTAVFV++TLQQLE + V VLV CHTRELA+QI++EYERFSK+ + K
Sbjct: 82 CQAKSGMGKTAVFVISTLQQLEREEGKVNVLVSCHTRELAYQIAREYERFSKFFDPVPKT 141
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
VF+GG PI KDE+ L+ P IVVGTPGR+ ALV + L LS +KHFILDECDKML+QL
Sbjct: 142 AVFYGGTPIGKDEKVLRDDVPNIVVGTPGRLKALVNSGALKLSNVKHFILDECDKMLDQL 201
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQEIF +P KQVMMFSATLSK R VCKKFM DPMEV +DD+AKLTLHGL+QH
Sbjct: 202 DMRRDVQEIFLKTPVQKQVMMFSATLSKTSREVCKKFMDDPMEVSIDDDAKLTLHGLKQH 261
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG-MTQE 391
YVKL E +KN+KL +LLD LEFNQVVIFVKS R LS LL +Q FPA IH G M Q
Sbjct: 262 YVKLLEEQKNRKLLDLLDALEFNQVVIFVKSGRRAETLSALLQDQMFPATHIHGGRMPQA 321
Query: 392 ERLKKYQEFKDFH----------------------------------------------- 404
+RL++YQ+FK+F
Sbjct: 322 KRLERYQQFKNFEKRILVATDVFGRGMDIERVNIVINYDMPEDTEESDASDTYLHRVARA 381
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA++F S + DA +LN VQDRF V +++LP+ ++ S Y+E
Sbjct: 382 GRFGTKGLAVSFVSTDEDATVLNKVQDRFAVQVTDLPENLEKSLYME 428
>gi|426387517|ref|XP_004060213.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 2 [Gorilla
gorilla gorilla]
Length = 295
Score = 400 bits (1029), Expect = e-109, Method: Compositional matrix adjust.
Identities = 207/325 (63%), Positives = 243/325 (74%), Gaps = 38/325 (11%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC F +++ I +A+LGMD+L
Sbjct: 58 AIVDCG--------FEHPSEVQHECI------------------------PQAILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 265
Query: 334 VKLKENEKNKKLFELLDVLEFNQVV 358
VKLK++EKN+KLF+LLDVLEFNQ V
Sbjct: 266 VKLKDSEKNRKLFDLLDVLEFNQPV 290
>gi|186522071|ref|NP_850807.2| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004258|gb|AED91641.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 344
Score = 400 bits (1028), Expect = e-109, Method: Compositional matrix adjust.
Identities = 198/342 (57%), Positives = 243/342 (71%), Gaps = 46/342 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R K L+L ++HFILDECDKML
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+ LL E NFP++ IH GM+
Sbjct: 181 VQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICIHSGMS 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEERL +Y+ FK+ H
Sbjct: 241 QEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + +D+++LN VQ+RF+V I ELP++ID STY+
Sbjct: 301 TKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYM 342
Score = 88.2 bits (217), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 257 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 304
>gi|67623541|ref|XP_668053.1| helicase [Cryptosporidium hominis TU502]
gi|54659242|gb|EAL37829.1| helicase [Cryptosporidium hominis]
gi|323509341|dbj|BAJ77563.1| cgd8_3900 [Cryptosporidium parvum]
gi|323510329|dbj|BAJ78058.1| cgd8_3900 [Cryptosporidium parvum]
Length = 427
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 272/423 (64%), Gaps = 80/423 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
+G YV+IH+SGFRDF LKPE++RAI D F + +
Sbjct: 35 RGNYVAIHASGFRDFFLKPELIRAIGDAG---------------------FEHPSEVQHE 73
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCH 188
T H A+ G+DILCQAKSGMGKTAVFVL+ LQQL + NV + + H
Sbjct: 74 TIPH-----------AITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVECICIGH 122
Query: 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVR 248
TRELAFQ+ E++RFSKY+ N+K V +GG+PIQKD + L P I++GTPGRI+AL+R
Sbjct: 123 TRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNILIGTPGRIIALIR 182
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
KKL + HF+LDECDK LE L+MR+DVQEIF S+P KQVMMFSAT++KEIR VC+K
Sbjct: 183 QKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVMMFSATMTKEIRDVCRK 242
Query: 309 FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
FM +P+E++VDDE KLTLHGL Q+YVKL E+EKN+KL +LLD LEFNQV+IFVKSV+R
Sbjct: 243 FMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNRKLNDLLDQLEFNQVIIFVKSVSRAQ 302
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------ 404
AL LL+E +FP++ IH ++Q+ER+ +YQ+FK+F
Sbjct: 303 ALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMVATDLFGRGIDIERVNIVIN 362
Query: 405 ----------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442
KGLAIT S + D+++LN+VQ RF+V+I+E+P++ID S
Sbjct: 363 YDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLNDVQSRFEVNIAEMPNQIDTS 422
Query: 443 TYI 445
+YI
Sbjct: 423 SYI 425
>gi|348688601|gb|EGZ28415.1| hypothetical protein PHYSODRAFT_309277 [Phytophthora sojae]
Length = 425
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 194/340 (57%), Positives = 243/340 (71%), Gaps = 46/340 (13%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MDI+CQAKSGMGKTAVFVLATL Q+E D + V+VMCHTRELAFQI+ EYERFSKY+ +
Sbjct: 1 MDIICQAKSGMGKTAVFVLATLHQIEPVDGQISVVVMCHTRELAFQIAHEYERFSKYLVD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
+K GVF+GG+PI ++ E LK + P I+VGTPGRIL L+R K L L +KHF++DECDKML
Sbjct: 61 VKTGVFYGGVPISQNREALKNNPPHILVGTPGRILGLLREKTLKLDKVKHFVMDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
E ++MRRD+QEIF+++PH KQVMMFSATLSKEIRPVC+KF DPME+YVDDE KLTLHGL
Sbjct: 121 EAIDMRRDIQEIFKATPHDKQVMMFSATLSKEIRPVCRKFCQDPMEIYVDDETKLTLHGL 180
Query: 330 QQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QQ+Y+KL+E+EKN+KL +LLD LEFNQVVIFV R L+ LL+E NFP++ I ++
Sbjct: 181 QQYYIKLEESEKNRKLNDLLDALEFNQVVIFVSKKNRGRELNRLLNECNFPSICITADLS 240
Query: 390 QEERLKKYQEFKDFH--------------------------------------------- 404
QEER+K+Y+ FKDF
Sbjct: 241 QEERIKRYKSFKDFQKRILVTTDLFGRGMDIERVNIVVNYDFPNDSDQYLHRVGRAGRFG 300
Query: 405 -KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
KGL+I+F S E D ++L VQ RF+V+I ELPD+ID+ST
Sbjct: 301 TKGLSISFISSEEDTEMLAKVQSRFEVNIPELPDQIDIST 340
Score = 88.2 bits (217), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 39/48 (81%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILV T+LFGRGMDIERVNIV NYD P DSD YLHRV RAGRFGTK +
Sbjct: 257 RILVTTDLFGRGMDIERVNIVVNYDFPNDSDQYLHRVGRAGRFGTKGL 304
>gi|66361130|ref|XP_627282.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
[Cryptosporidium parvum Iowa II]
gi|46228851|gb|EAK89721.1| Sub2p like superfamily II helicase involved in snRNP biogenesis
[Cryptosporidium parvum Iowa II]
Length = 430
Score = 400 bits (1027), Expect = e-109, Method: Compositional matrix adjust.
Identities = 206/423 (48%), Positives = 272/423 (64%), Gaps = 80/423 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
+G YV+IH+SGFRDF LKPE++RAI D F + +
Sbjct: 38 RGNYVAIHASGFRDFFLKPELIRAIGDAG---------------------FEHPSEVQHE 76
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD--SNVYVLVMCH 188
T H A+ G+DILCQAKSGMGKTAVFVL+ LQQL + NV + + H
Sbjct: 77 TIPH-----------AITGVDILCQAKSGMGKTAVFVLSILQQLNPDEESKNVECICIGH 125
Query: 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVR 248
TRELAFQ+ E++RFSKY+ N+K V +GG+PIQKD + L P I++GTPGRI+AL+R
Sbjct: 126 TRELAFQVKNEFDRFSKYLKNVKPQVVYGGIPIQKDIDMLSNSTPNILIGTPGRIIALIR 185
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
KKL + HF+LDECDK LE L+MR+DVQEIF S+P KQVMMFSAT++KEIR VC+K
Sbjct: 186 QKKLVTEGIAHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVMMFSATMTKEIRDVCRK 245
Query: 309 FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
FM +P+E++VDDE KLTLHGL Q+YVKL E+EKN+KL +LLD LEFNQV+IFVKSV+R
Sbjct: 246 FMQNPVEIFVDDETKLTLHGLLQYYVKLGESEKNRKLNDLLDQLEFNQVIIFVKSVSRAQ 305
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------ 404
AL LL+E +FP++ IH ++Q+ER+ +YQ+FK+F
Sbjct: 306 ALHKLLTECSFPSICIHAALSQQERISRYQQFKNFEKRIMVATDLFGRGIDIERVNIVIN 365
Query: 405 ----------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442
KGLAIT S + D+++LN+VQ RF+V+I+E+P++ID S
Sbjct: 366 YDMPENTDSYLHRVGRAGRFGTKGLAITMVSSQTDSQVLNDVQSRFEVNIAEMPNQIDTS 425
Query: 443 TYI 445
+YI
Sbjct: 426 SYI 428
>gi|403302193|ref|XP_003941747.1| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 2 [Saimiri
boliviensis boliviensis]
Length = 315
Score = 400 bits (1027), Expect = e-108, Method: Compositional matrix adjust.
Identities = 204/315 (64%), Positives = 237/315 (75%), Gaps = 45/315 (14%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMP 126
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC E + V + +P
Sbjct: 31 KKDMKGSYVSIHSSGFRDFLLKPELLRAIVDC--------------GFEHPSEVQHECIP 76
Query: 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186
+ A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVM
Sbjct: 77 Q------------------AILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVM 118
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246
CHTRELAFQISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILAL
Sbjct: 119 CHTRELAFQISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILAL 178
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
VRN+ +L +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC
Sbjct: 179 VRNRSFSLKNVKHFVLDECDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVC 238
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM DPMEV+VDDE KLTLHGLQQHYVKL+++EKN+KLF+LLDVLEFNQ V
Sbjct: 239 RKFMQDPMEVFVDDETKLTLHGLQQHYVKLRDSEKNRKLFDLLDVLEFNQPV-------- 290
Query: 367 CIALSTLLSEQNFPA 381
TL + Q FPA
Sbjct: 291 -----TLSAVQGFPA 300
>gi|308811262|ref|XP_003082939.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
gi|116054817|emb|CAL56894.1| putative HLA-B associated transcript 1 (ISS) [Ostreococcus tauri]
Length = 543
Score = 398 bits (1023), Expect = e-108, Method: Compositional matrix adjust.
Identities = 213/433 (49%), Positives = 264/433 (60%), Gaps = 79/433 (18%)
Query: 46 YEDEENTEQIVADG-AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVA 104
Y+D N A G A D A K YV IHS+GFRDFLLKPE+LRAIVDC
Sbjct: 24 YDDVANAAGTNAPGDAVDDTADGTTAKKGYVGIHSTGFRDFLLKPELLRAIVDCG----- 78
Query: 105 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTA 164
E + V + +P+ A+LGMD+LCQAKSGMGKTA
Sbjct: 79 ---------FEHPSEVQHECIPQ------------------AILGMDVLCQAKSGMGKTA 111
Query: 165 VFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224
VFV+ LQQLE T V +++C+TRELA+QIS E+ERFS ++ ++ V FGG+PI +
Sbjct: 112 VFVITVLQQLEPTHGEVGAVILCNTRELAYQISHEFERFSTFLGDVTTAVVFGGIPINQQ 171
Query: 225 EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS 284
E LK + P IVVGTPGR+ AL + LNL HF+LDECDKMLE+L+MR DVQEIF++
Sbjct: 172 REQLKLNPPNIVVGTPGRLKALANDGTLNLKKCAHFVLDECDKMLEELDMRSDVQEIFKA 231
Query: 285 SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKK 344
+PH KQVMMF+ATLSKE+R +CKKFM+DPME++VDDE KLTLHGL QHYVKL+E EKN+K
Sbjct: 232 TPHDKQVMMFTATLSKELRALCKKFMNDPMEIFVDDETKLTLHGLVQHYVKLEEAEKNRK 291
Query: 345 LFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD-- 402
L +LLD L FNQVVIFV SV+RC AL LL E NFP++ IH M QEERL Y+ FKD
Sbjct: 292 LNDLLDSLMFNQVVIFVSSVSRCKALDRLLRECNFPSIGIHGDMKQEERLACYKSFKDGD 351
Query: 403 ----------------------------------FH----------KGLAITFASDENDA 418
H KGLA+TF + D
Sbjct: 352 KRILVATDLVARGIDIERVNIVINYDMPSSADTYLHRVGRAGRFGTKGLAVTFVASSEDT 411
Query: 419 KILNNVQDRFDVS 431
+L +V +RF+ +
Sbjct: 412 DVLASVHERFETN 424
>gi|237843393|ref|XP_002370994.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|211968658|gb|EEB03854.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii ME49]
gi|221481804|gb|EEE20174.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii GT1]
gi|221502304|gb|EEE28037.1| ATP-dependent RNA helicase, putative [Toxoplasma gondii VEG]
Length = 434
Score = 396 bits (1018), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/466 (46%), Positives = 284/466 (60%), Gaps = 104/466 (22%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEV------KGAYVSIHSSGFRDFLLKPEILRA 94
D+L+DYE++E + AK+K V +G YVSIH+SGFRDF LKPE+LRA
Sbjct: 10 DELVDYEEDEQND-----------AKEKGVEDVVVGRGNYVSIHASGFRDFFLKPELLRA 58
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D F + +T H A+ G+D+LC
Sbjct: 59 IGDAG---------------------FEHPSEVQHETIPH-----------AITGVDVLC 86
Query: 155 QAKSGMGKTAVFVLATLQQL-------ETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
QAKSGMGKTAVFVL+ LQQL E V L + HTRELAFQI E++RFSKY+
Sbjct: 87 QAKSGMGKTAVFVLSILQQLNLDTSGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYL 146
Query: 208 SNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
N+K V +GG+ IQK+ + LK P I++GTPGR+LAL++ K LN + HF+LDEC
Sbjct: 147 KNVKCEVVYGGISIQKNIDMLKDAKTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDEC 206
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK LE+L+MR+DVQ IF ++P KQVM FSAT++KEIR VCK+FM P+EV++DDE+KLT
Sbjct: 207 DKCLEKLDMRKDVQNIFMATPKKKQVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLT 266
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGL Q+YVKL+E+EKN+KL +LLD LEFNQV+IFVKSV+R AL LL+E NFP+++IH
Sbjct: 267 LHGLLQYYVKLQESEKNRKLNDLLDTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIH 326
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G+ QEER+ +YQ+FK+F
Sbjct: 327 AGLDQEERINRYQQFKNFEKRIMVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRA 386
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + ++D +LN+VQ RF+V I+E+P ID S YI
Sbjct: 387 GRFGTKGLAITFVASQDDTNVLNDVQTRFEVHIAEMPQSIDASQYI 432
>gi|67903470|ref|XP_681991.1| hypothetical protein AN8722.2 [Aspergillus nidulans FGSC A4]
gi|40741081|gb|EAA60271.1| hypothetical protein AN8722.2 [Aspergillus nidulans FGSC A4]
Length = 451
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 222/490 (45%), Positives = 286/490 (58%), Gaps = 121/490 (24%)
Query: 37 MADNDDLLDYEDEE---------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE N Q DG + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTATPAANGGQAKKDGELTVTGGRADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY
Sbjct: 91 --PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG PIQKD E L + P I+VGTPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKA 208
Query: 260 FILDECDKMLEQ-----------------LEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302
F+LDECDKML+Q L+MRRDVQEIFR++P KQVMMFSATLS+++
Sbjct: 209 FVLDECDKMLDQIGRSFNPNSQSRSPLTPLDMRRDVQEIFRATPTDKQVMMFSATLSQDV 268
Query: 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVK 362
RP+CKKFM +P+EVYVDD+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVK
Sbjct: 269 RPICKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVK 328
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------ 404
S R L LL E NFP++++H G +Y+EFK+F+
Sbjct: 329 STIRANELDKLLRECNFPSIAVHSG--------RYKEFKEFNKRICVATDVFGRGIDIER 380
Query: 405 ----------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KGL+I+F S D ++L +++ RF+V++ E P
Sbjct: 381 INLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSTPEDEQVLKDIEKRFEVALPEYP 440
Query: 437 DE-IDLSTYI 445
+E +D STY+
Sbjct: 441 EEGVDSSTYM 450
>gi|401412201|ref|XP_003885548.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
gi|325119967|emb|CBZ55520.1| hypothetical protein NCLIV_059450 [Neospora caninum Liverpool]
Length = 434
Score = 396 bits (1017), Expect = e-107, Method: Compositional matrix adjust.
Identities = 217/466 (46%), Positives = 284/466 (60%), Gaps = 104/466 (22%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEV------KGAYVSIHSSGFRDFLLKPEILRA 94
D+L+DYE++E + AK+K V +G YVSIH+SGFRDF LKPE+LRA
Sbjct: 10 DELVDYEEDEQND-----------AKEKGVEDVVVGRGNYVSIHASGFRDFFLKPELLRA 58
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D F + +T H A+ G+D+LC
Sbjct: 59 IGDAG---------------------FEHPSEVQHETIPH-----------AITGVDVLC 86
Query: 155 QAKSGMGKTAVFVLATLQQL-------ETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
QAKSGMGKTAVFVL+ LQQL E V L + HTRELAFQI E++RFSKY+
Sbjct: 87 QAKSGMGKTAVFVLSILQQLNLDASGEEGNTQGVVCLGIAHTRELAFQIKNEFDRFSKYL 146
Query: 208 SNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
N+K V +GG+ IQK+ + LK P I++GTPGR+LAL++ K LN + HF+LDEC
Sbjct: 147 KNVKCEVVYGGISIQKNIDMLKDPKTTPHILIGTPGRVLALIKGKHLNAEKVAHFVLDEC 206
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK LE+L+MR+DVQ IF ++P KQVM FSAT++KEIR VCK+FM P+EV++DDE+KLT
Sbjct: 207 DKCLEKLDMRKDVQNIFMATPKKKQVMFFSATMNKEIRDVCKRFMQSPVEVFIDDESKLT 266
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LHGL Q+YVKL+E+EKN+KL +LLD LEFNQV+IFVKSV+R AL LL+E NFP+++IH
Sbjct: 267 LHGLLQYYVKLQESEKNRKLNDLLDTLEFNQVIIFVKSVSRAQALDRLLTECNFPSIAIH 326
Query: 386 RGMTQEERLKKYQEFKDFH----------------------------------------- 404
G+ QEER+ +YQ+FK+F
Sbjct: 327 AGLDQEERINRYQQFKNFEKRIMVATDLFGRGIDIERVNIVINYDMPDSSDSYLHRVGRA 386
Query: 405 -----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + ++D +LN+VQ RF+V I+E+P ID S YI
Sbjct: 387 GRFGTKGLAITFVASQDDTNVLNDVQTRFEVHIAEMPQSIDASQYI 432
>gi|320583137|gb|EFW97353.1| ATP-dependent RNA helicase, putative [Ogataea parapolymorpha DL-1]
Length = 421
Score = 392 bits (1007), Expect = e-106, Method: Compositional matrix adjust.
Identities = 208/457 (45%), Positives = 282/457 (61%), Gaps = 96/457 (21%)
Query: 41 DDLLDYEDEE--NTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK-PEILRAIVD 97
++LLDY D E N + AG+ ++ + KG+YV IH++GFRDF K P +
Sbjct: 7 EELLDYSDSEEINVQPAQQAAAGEEGKEETDKKGSYVGIHTTGFRDFFFKLPLTISVQQA 66
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C +P+ ++LG D+LCQAK
Sbjct: 67 C--------------------------IPQ------------------SILGNDVLCQAK 82
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SG+GKTAVFVL+TLQQL+ T + +V+CHTRELA+QI EY RFSKYM +K VF+G
Sbjct: 83 SGLGKTAVFVLSTLQQLDPTPGEISTVVICHTRELAYQIKNEYARFSKYMPEVKTEVFYG 142
Query: 218 GLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
G+ I++D E LK + P IVVGTPGR+ ALVR+K + L+ +K+F++DECD++LEQ++MR
Sbjct: 143 GVNIKQDAEKLKNKDTCPHIVVGTPGRLNALVRDKLIRLNNVKNFVIDECDQVLEQVDMR 202
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK 335
RDVQE+FR++P KQVMMFSATLS+EIRP+CKKFM +P+E+YVDDE KLTLHGLQQ+Y+
Sbjct: 203 RDVQEVFRATPFQKQVMMFSATLSQEIRPICKKFMKNPLEIYVDDEKKLTLHGLQQYYIN 262
Query: 336 LKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
L E +KN KL ELLD LEFNQV+IFVKS R AL+ LL + NFP++ +H G+ QEER+
Sbjct: 263 LPEEKKNLKLAELLDSLEFNQVIIFVKSTKRATALNKLLCDSNFPSIVVHSGIPQEERIA 322
Query: 396 KYQEFKDFH----------------------------------------------KGLAI 409
+Y+ FK+++ KGL++
Sbjct: 323 RYKLFKEYNKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKGLSV 382
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
+F S+E D +ILN +Q+RFDV I E P E +D STY+
Sbjct: 383 SFVSNEQDQEILNKIQERFDVKIQEFPAEGVDPSTYM 419
>gi|452846565|gb|EME48497.1| hypothetical protein DOTSEDRAFT_67510 [Dothistroma septosporum
NZE10]
Length = 461
Score = 392 bits (1006), Expect = e-106, Method: Compositional matrix adjust.
Identities = 201/397 (50%), Positives = 258/397 (64%), Gaps = 62/397 (15%)
Query: 38 ADNDDLLDYEDEE---------------------NTEQIVADGAGDALAKQKEVKGAYVS 76
A +DL+DY DEE + G+G A AK G+YV
Sbjct: 3 AGEEDLIDYSDEELQPTDGATATGAPGAAANGDAKKGDLSVSGSGAAQAK-----GSYVG 57
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
I+S+ FRDFLLKPE+L+AI DC F ++++V I
Sbjct: 58 INSASFRDFLLKPELLKAITDCG--------FEHPSEVQQVCI----------------- 92
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+A+LG D+LCQAKSG+GKTAVFVL+TLQQ+E VLVMCHTRELAFQI
Sbjct: 93 -------PQAILGTDVLCQAKSGLGKTAVFVLSTLQQIEPVAGEASVLVMCHTRELAFQI 145
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLN 253
EY RFSKYM +K VF+GG I KD+ LK TH P I+V TPGR+ LVR K L
Sbjct: 146 KNEYARFSKYMPEVKTAVFYGGTDINKDKALLKDKETH-PHIIVATPGRLNGLVREKALR 204
Query: 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
L + F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+ RP+CKKFM +P
Sbjct: 205 LGSVSRFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSQATRPICKKFMQNP 264
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
+E+YVDDE KLTLHGLQQ+Y+K E EKN+KL +LLD L++NQV+IFVK+ RC L L
Sbjct: 265 LEIYVDDEEKLTLHGLQQYYIKCDEGEKNRKLNDLLDTLQYNQVIIFVKNTLRCGELDRL 324
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
L E NFP++++H G++QEER+K+YQ FK++ K + ++
Sbjct: 325 LRECNFPSIAVHSGVSQEERIKRYQAFKNYDKRICVS 361
Score = 75.5 bits (184), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 42/64 (65%), Gaps = 16/64 (25%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPE----------------DSDTYLHRVARAGRFG 143
RI V+T++FGRG+DIER+N+ NYDMPE +DTYLHRV RAGRFG
Sbjct: 357 RICVSTDVFGRGIDIERINLAINYDMPESVEKGADPEAKDALASSADTYLHRVGRAGRFG 416
Query: 144 TKAV 147
TK V
Sbjct: 417 TKGV 420
>gi|209881121|ref|XP_002141999.1| ATP-dependent RNA helicae DDX39 [Cryptosporidium muris RN66]
gi|209557605|gb|EEA07650.1| ATP-dependent RNA helicae DDX39, putative [Cryptosporidium muris
RN66]
Length = 427
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 209/423 (49%), Positives = 274/423 (64%), Gaps = 80/423 (18%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
+G YV+IH+SGFRDF LKPE++RAI D F + +
Sbjct: 35 RGNYVAIHASGFRDFFLKPELIRAIGDAG---------------------FEHPSEVQHE 73
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--H 188
T H A+ G+DILCQAKSGMGKTAVFVL+ LQQL +++ V +C H
Sbjct: 74 TIPH-----------AITGVDILCQAKSGMGKTAVFVLSILQQLNPDENSKSVECLCIGH 122
Query: 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVR 248
TRELAFQ+ E++RFSKY+ NIK V +GG+PIQKD E L ++ P I++GTPGRI+AL+R
Sbjct: 123 TRELAFQVKNEFDRFSKYLKNIKTQVVYGGIPIQKDIELLSSNVPNILIGTPGRIIALIR 182
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
KKL + HF+LDECDK LE L+MR+DVQEIF S+P KQVMMFSAT+ KEIR VC+K
Sbjct: 183 QKKLITDGVVHFVLDECDKCLESLDMRKDVQEIFMSTPRKKQVMMFSATMVKEIRDVCRK 242
Query: 309 FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
FM +P+E++VDDE KLTLHGL Q+YVKL E EKN++L +LLD+LEFNQV+IFVKSV+R
Sbjct: 243 FMQNPVEIFVDDETKLTLHGLLQYYVKLSETEKNRRLTDLLDLLEFNQVIIFVKSVSRAQ 302
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------ 404
AL LL+E +FP++ IH G++Q+ER+ +YQ+FK+F
Sbjct: 303 ALHNLLTECSFPSICIHAGLSQQERISRYQQFKNFEKRIMVATDLFGRGIDIERVNIVIN 362
Query: 405 ----------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442
KGLAIT + + D++ILN+VQ RF+V+I+E+P +ID S
Sbjct: 363 YDMPENTDSYLHRVGRAGRFGTKGLAITLVASQTDSQILNDVQSRFEVNIAEMPSQIDTS 422
Query: 443 TYI 445
TYI
Sbjct: 423 TYI 425
>gi|85000681|ref|XP_955059.1| DEAD-box family helicase [Theileria annulata strain Ankara]
gi|65303205|emb|CAI75583.1| DEAD-box family helicase, putative [Theileria annulata]
Length = 451
Score = 390 bits (1002), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/474 (45%), Positives = 286/474 (60%), Gaps = 100/474 (21%)
Query: 40 NDDLLDYEDEE-----NTEQIVADGAGDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILR 93
+DL+DYE+EE +T+ ++ AG + +G+YV+IH+SGFRDF LKPEILR
Sbjct: 8 TEDLVDYEEEEGESKVSTKDVIKSAAGKKSKSDGTMGRGSYVAIHASGFRDFFLKPEILR 67
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D F + +T H A+ G+DIL
Sbjct: 68 AISDAG---------------------FEHPSEVQHETIPH-----------AITGVDIL 95
Query: 154 CQAKSGMGKTAVFVLATLQQLET--------TDSNVYVL--VMC----HTRELAFQISKE 199
CQAKSGMGKTAVFVL+ LQQL+ D NV + V C HTRELAFQI E
Sbjct: 96 CQAKSGMGKTAVFVLSILQQLDVEAEEGKRDADDNVKPVSRVSCVGISHTRELAFQIKNE 155
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLL 257
++RFSKY+ ++ V +GG+PIQKD LK P I+VGTPGR+LALV+ K LN+ +
Sbjct: 156 FDRFSKYLPQVRCEVVYGGVPIQKDVAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSV 215
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHF+LDECDK LE+L+MR+DVQ IF S+P KQVM FSAT++ +IR +CK+FM P+EV+
Sbjct: 216 KHFVLDECDKCLEKLDMRQDVQSIFLSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVF 275
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE+KLTLHGL Q+YVKL E++KN+KL +LLD LEFNQV+IFVKSV+R + L+ LL+E
Sbjct: 276 VDDESKLTLHGLLQYYVKLAESDKNRKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTEC 335
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+++IH G+ Q ER+ +Y +FK+F
Sbjct: 336 NFPSIAIHAGLDQSERINRYTQFKNFDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDS 395
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S D+ L +VQ RF+V+ISE+P ID S Y+
Sbjct: 396 YLHRVGRAGRFGTKGLAITFVSSPEDSSQLEDVQKRFEVNISEIPATIDTSLYL 449
>gi|403223084|dbj|BAM41215.1| DEAD-box family helicase [Theileria orientalis strain Shintoku]
Length = 453
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/483 (44%), Positives = 286/483 (59%), Gaps = 101/483 (20%)
Query: 32 FPHSKMADNDDLLDYEDEENTEQI----VADGAGDALAKQKEV--KGAYVSIHSSGFRDF 85
P +K +DL+DYE+EE ++ V AG +K +G+YV+IH+SGFRDF
Sbjct: 1 MPKAKNVATEDLVDYEEEEGESKVATKDVIKSAGGKKSKADGTMGRGSYVAIHASGFRDF 60
Query: 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
LKPEILRAI D F + +T H
Sbjct: 61 FLKPEILRAISDAG---------------------FEHPSEVQHETIPH----------- 88
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---------------SNVYVLVMCHTR 190
A+ G+DILCQAKSGMGKTAVFVL+ LQQL+ S V + + HTR
Sbjct: 89 AITGVDILCQAKSGMGKTAVFVLSILQQLDVDADEPVKRDAQDNLRPISRVSCVGISHTR 148
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVR 248
ELAFQI E++RFSKY+ +++ V +GG+PIQKD LK P I+VGTPGR+LALV+
Sbjct: 149 ELAFQIKNEFDRFSKYLPSVRCEVVYGGVPIQKDVAMLKDPEKMPHILVGTPGRLLALVK 208
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
K LN+ ++HF+LDECDK LE+L+MR+DVQ IF ++P KQVM FSAT++ E+R +CK+
Sbjct: 209 GKHLNMDSVRHFVLDECDKCLEKLDMRQDVQSIFMATPKKKQVMFFSATMTPEVRELCKR 268
Query: 309 FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
FM P+EV+VDDE+KLTLHGL Q+YVKL E+ KN+KL +LLD LEFNQV+IFVKSV+R +
Sbjct: 269 FMQSPVEVFVDDESKLTLHGLLQYYVKLSESVKNRKLNDLLDTLEFNQVIIFVKSVSRAV 328
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------------ 404
L+ LL+E NFP+++IH G+ Q ER+ +Y +FK+F
Sbjct: 329 TLNNLLTECNFPSIAIHAGLDQSERISRYTQFKNFDKRILVATDLFGRGIDVERVNIVIN 388
Query: 405 ----------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442
KGLAITF S D+ L +VQ RF+V+I E+P+ ID S
Sbjct: 389 YDMPDSTDSYLHRVGRAGRFGTKGLAITFVSSPEDSSALADVQKRFEVTIPEIPETIDTS 448
Query: 443 TYI 445
Y+
Sbjct: 449 LYL 451
>gi|328873781|gb|EGG22147.1| DEAD/DEAH box helicase [Dictyostelium fasciculatum]
Length = 426
Score = 390 bits (1001), Expect = e-105, Method: Compositional matrix adjust.
Identities = 205/461 (44%), Positives = 283/461 (61%), Gaps = 85/461 (18%)
Query: 37 MADND----DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
MAD D +L +YE+ + + + G +K K +V++HSSGFR+FLLKPE+
Sbjct: 1 MADPDVDINELAEYEESDPEDNVQETNGG---SKNVSAKDTHVAMHSSGFREFLLKPELE 57
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R I DC E + V N +P+ A+LG D+
Sbjct: 58 RVIGDCG--------------FEHPSEVQNECIPQ------------------AILGHDV 85
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
+CQAKSGMGKTAVFVL+ LQQ++ S V LV+CHTRELA+QI E++RF KYM +K
Sbjct: 86 ICQAKSGMGKTAVFVLSLLQQIDKNPSGVVALVLCHTRELAYQICDEFDRFVKYMPQVKT 145
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
V +GG+PI +E L+ P IV+GTPGR+LAL +K L+L +KHF+LDECD +LE L
Sbjct: 146 AVIYGGIPINTQKELLRDKQPNIVIGTPGRVLALATDKSLSLKNVKHFVLDECDSLLEAL 205
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MR+DVQ+IF+++P +KQVMMFSATLS+ IR VCKKFM+ P E+Y++D +KLTLHGLQQ+
Sbjct: 206 DMRKDVQKIFKATPASKQVMMFSATLSESIRSVCKKFMNHPFEIYINDGSKLTLHGLQQY 265
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
++KL E++KNKKL +LLD L+FNQ+VIFVKSV R L+ +LS+ F ++ IHRG+ Q E
Sbjct: 266 FIKLNEDQKNKKLVDLLDGLDFNQIVIFVKSVERAKLLNQILSDVGFSSICIHRGLDQPE 325
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+++Y++FK+F KG
Sbjct: 326 RIEQYRKFKNFQSRVMVATNIFGRGIDIERVNVVINYDMAESPDTYLHRVGRAGRFGTKG 385
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
LAI+F + +D L+ VQ +F VS+ +LPD ID STY+ G
Sbjct: 386 LAISFITSPDDQTTLDTVQSKFVVSVKDLPDTIDPSTYMSG 426
>gi|399218275|emb|CCF75162.1| unnamed protein product [Babesia microti strain RI]
Length = 434
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 215/468 (45%), Positives = 286/468 (61%), Gaps = 95/468 (20%)
Query: 37 MAD-NDDLLDYEDEENT----EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
MAD N++L+DYE+E+ T + I + GD + +G+YV+IH+SGFRDF LKPE+
Sbjct: 1 MADMNEELVDYEEEQGTLPTRQVIKSATGGDGMIG----RGSYVAIHASGFRDFFLKPEL 56
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAI D F + +T H A+ G+D
Sbjct: 57 LRAIGDAG---------------------FEHPSEVQHETIPH-----------AITGVD 84
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLVMCHTRELAFQISKEYERFSK 205
ILCQAKSGMGKTAVFVL+ LQQ+ D S V L + HTRELA+QI E++RF K
Sbjct: 85 ILCQAKSGMGKTAVFVLSVLQQINAPDQPTDSTSGVVCLGISHTRELAYQIKNEFDRFGK 144
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
Y+ N+K V +GG+PIQK+ LK + P ++VGTPGRILAL++ + LN ++HF+LD
Sbjct: 145 YIKNVKCEVVYGGIPIQKNISMLKDPSTCPHVLVGTPGRILALIKGRYLNTDKIQHFVLD 204
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDK LE+L+MR+DVQ IF S+P KQVM FSAT++ EI+ VCKKFM P+EV+VD+E+K
Sbjct: 205 ECDKCLEKLDMRKDVQNIFISTPKKKQVMFFSATMTPEIKAVCKKFMQSPVEVFVDNESK 264
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGL Q+YVKL+E++KN+KL +LLD LEFNQV+IFVKSV+R L LL+E NFP+++
Sbjct: 265 LTLHGLLQYYVKLQESDKNRKLNDLLDALEFNQVIIFVKSVSRAQILDNLLTECNFPSIA 324
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
IH G+ Q ER+ +Y +FK+F
Sbjct: 325 IHAGLEQAERITRYNQFKNFDKRIMVATDLFGRGIDIERVNIVINYDMPDSTDSYLHRVG 384
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + D L +VQ RF+V+ISE+P ID S Y+
Sbjct: 385 RAGRFGTKGLAITFVSTDEDLASLQSVQTRFEVTISEMPSSIDSSLYL 432
>gi|449298576|gb|EMC94591.1| hypothetical protein BAUCODRAFT_35821 [Baudoinia compniacensis UAMH
10762]
Length = 455
Score = 389 bits (1000), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/394 (50%), Positives = 259/394 (65%), Gaps = 57/394 (14%)
Query: 37 MADNDDLLDYEDEE------------------NTEQIVADGAGDALAKQKEVKGAYVSIH 78
M+ +DL+DY DEE + GAG A + KG+YV IH
Sbjct: 1 MSAEEDLIDYSDEEIAPTDGAAATGAATNGDAKKGDLTVTGAGAA-----QGKGSYVGIH 55
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
S+ FRD LLKPEI++AI DC F ++++V I
Sbjct: 56 STSFRDLLLKPEIMKAITDCG--------FEHPSEVQQVCI------------------- 88
Query: 139 AGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A++G D+LCQAKSG+GKTAVFV++TLQQ++ VLVMCHTRELAFQI
Sbjct: 89 -----PQAIVGTDVLCQAKSGLGKTAVFVISTLQQIDVVPGEASVLVMCHTRELAFQIKN 143
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSL 256
EY RF+KYM ++K VF+GG I+++E+ L + P I+V TPGR+ ALVR KKL L
Sbjct: 144 EYNRFTKYMPDVKTAVFYGGTDIKENEKLLSSKETYPNIIVATPGRLNALVREKKLRLGT 203
Query: 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+ RP+CKKFM +P+E+
Sbjct: 204 VKFFVLDECDKMLDQIDMRRDVQEIFRATPTNKQVMMFSATLSQATRPICKKFMRNPLEI 263
Query: 317 YVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376
YVDDE KLTLHGL+Q Y KL E+EKN++L +LLD + FNQV+IFVKS R L+ LL E
Sbjct: 264 YVDDETKLTLHGLRQFYCKLSESEKNRRLNDLLDEVTFNQVIIFVKSTVRANELAKLLIE 323
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
NFPA ++H G++QEER+K+YQEFK F + ++
Sbjct: 324 CNFPATAVHSGISQEERIKRYQEFKAFKHRICVS 357
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 15/63 (23%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPED---------------SDTYLHRVARAGRFGT 144
RI V+T++FGRG+DIER+N+ NYDMP+ +DTYLHRV RAGRFGT
Sbjct: 353 RICVSTDVFGRGIDIERINMAVNYDMPDSPQNPGSSDKESLAQAADTYLHRVGRAGRFGT 412
Query: 145 KAV 147
K V
Sbjct: 413 KGV 415
>gi|426352367|ref|XP_004043684.1| PREDICTED: spliceosome RNA helicase DDX39B isoform 3 [Gorilla
gorilla gorilla]
gi|119623811|gb|EAX03406.1| hCG2005638, isoform CRA_c [Homo sapiens]
gi|194389896|dbj|BAG60464.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 200/313 (63%), Positives = 226/313 (72%), Gaps = 52/313 (16%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNI------KVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
M + LAF S + S +S + KV VFFGGL I+KDEE LK + P IVVGT
Sbjct: 35 MSPSTALAFVTSCSSQSCSGPLSTVALSIRQKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 94
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLS
Sbjct: 95 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 154
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVI
Sbjct: 155 KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI 214
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------- 404
FVKSV RCIAL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 215 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMD 274
Query: 405 -------------------------------KGLAITFASDENDAKILNNVQDRFDVSIS 433
KGLAITF SDENDAKILN+VQDRF+V+IS
Sbjct: 275 IERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNIS 334
Query: 434 ELPDEIDLSTYIE 446
ELPDEID+S+YIE
Sbjct: 335 ELPDEIDISSYIE 347
Score = 101 bits (252), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 261 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 308
>gi|71027499|ref|XP_763393.1| ATP-dependent RNA helicase [Theileria parva strain Muguga]
gi|68350346|gb|EAN31110.1| ATP-dependent RNA helicase, putative [Theileria parva]
Length = 451
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 216/474 (45%), Positives = 285/474 (60%), Gaps = 100/474 (21%)
Query: 40 NDDLLDYEDEE-----NTEQIVADGAGDALAKQKEV-KGAYVSIHSSGFRDFLLKPEILR 93
+DL+DYE+EE +T+ ++ AG + +G+YV+IH+SGFRDF LKPEILR
Sbjct: 8 TEDLVDYEEEEGETKVSTKDVIKSAAGKKSKTDGTMGRGSYVAIHASGFRDFFLKPEILR 67
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI D F + +T H A+ G+DIL
Sbjct: 68 AISDAG---------------------FEHPSEVQHETIPH-----------AITGVDIL 95
Query: 154 CQAKSGMGKTAVFVLATLQQLETT------DSNVYVLVMC--------HTRELAFQISKE 199
CQAKSGMGKTAVFVL+ LQQL+ D+ V +C HTRELAFQI E
Sbjct: 96 CQAKSGMGKTAVFVLSILQQLDVEAEEGKRDAEDNVKPVCRVSCIGISHTRELAFQIKNE 155
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLL 257
++RFSKY+ ++ V +GG+PIQKD LK P I+VGTPGR+LALV+ K LN+ +
Sbjct: 156 FDRFSKYLPQVRCEVVYGGVPIQKDVAMLKDPAKTPHILVGTPGRLLALVKAKHLNMDSV 215
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHF+LDECDK LE+L+MR+DVQ IF S+P KQVM FSAT++ +IR +CK+FM P+EV+
Sbjct: 216 KHFVLDECDKCLEKLDMRQDVQSIFLSTPKKKQVMFFSATMNNDIRELCKRFMQSPVEVF 275
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE+KLTLHGL Q+YVKL E++KN+KL +LLD LEFNQV+IFVKSV+R + L+ LL+E
Sbjct: 276 VDDESKLTLHGLLQYYVKLAESDKNRKLNDLLDTLEFNQVIIFVKSVSRAVTLNNLLTEC 335
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+++IH G+ Q ER+ +Y +FK+F
Sbjct: 336 NFPSIAIHAGLDQSERINRYTQFKNFDKRIMVATDLFGRGIDVERVNIVINYDMPDSTDS 395
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S D+ L +VQ RF+V+ISE+P ID S Y+
Sbjct: 396 YLHRVGRAGRFGTKGLAITFVSSPEDSSQLEDVQKRFEVNISEIPATIDTSLYL 449
>gi|330790076|ref|XP_003283124.1| DEAD/DEAH box helicase [Dictyostelium purpureum]
gi|325086991|gb|EGC40373.1| DEAD/DEAH box helicase [Dictyostelium purpureum]
Length = 426
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 204/452 (45%), Positives = 280/452 (61%), Gaps = 80/452 (17%)
Query: 42 DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRI 101
D+ + + E +++ V + AGDA K K +V++HSSGFR+FLLKPE+ R I DC
Sbjct: 9 DISELAEYEESDEEVQNDAGDA-KKNISAKDTHVAMHSSGFREFLLKPELERVIGDCG-- 65
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMG 161
E + V N +P+ A+LG D++CQAKSGMG
Sbjct: 66 ------------FEHPSEVQNECIPQ------------------AILGSDLICQAKSGMG 95
Query: 162 KTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221
KTAVFV++TLQQL+ S V LV+CHTRELA+QI EY+RF+KY+ NIK V +GG+P+
Sbjct: 96 KTAVFVISTLQQLDNNPSGVTTLVLCHTRELAYQICDEYDRFTKYLPNIKTAVIYGGIPV 155
Query: 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281
Q ++ LK P IV+GTPGRIL L + L+L +K F+LDECD +LE L+MR+DVQ I
Sbjct: 156 QTHKDLLKEKKPNIVIGTPGRILQLAKEGALSLKEIKQFVLDECDSLLESLDMRKDVQMI 215
Query: 282 FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK 341
F+ P KQVMMFSATLS +RPVCKKFM +P+E+Y++D +KLTLHGLQQ+YV++KE++K
Sbjct: 216 FKLIPPNKQVMMFSATLSDTVRPVCKKFMSNPLEIYINDGSKLTLHGLQQYYVEIKEDQK 275
Query: 342 NKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
NKKL +LLD L+FNQ VIFVKSV R AL+ +L + FP++ IHR ++Q ER+++Y++FK
Sbjct: 276 NKKLIDLLDALDFNQAVIFVKSVPRAAALNKILQDIGFPSICIHRDLSQPERIEQYRKFK 335
Query: 402 DFH----------------------------------------------KGLAITFASDE 415
+F KGLAI+F +
Sbjct: 336 NFESRIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSK 395
Query: 416 NDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
+D ++L VQ RF V I +LP I+ S+Y+ G
Sbjct: 396 DD-EVLTQVQSRFVVQIKDLPATIESSSYMSG 426
>gi|365986805|ref|XP_003670234.1| hypothetical protein NDAI_0E01750 [Naumovozyma dairenensis CBS 421]
gi|343769004|emb|CCD24991.1| hypothetical protein NDAI_0E01750 [Naumovozyma dairenensis CBS 421]
Length = 450
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 211/474 (44%), Positives = 286/474 (60%), Gaps = 101/474 (21%)
Query: 41 DDLLDYEDEENTEQIVA--------DGAGDALAKQKEVKGAYVSIHSSGFR--------- 83
+DLL+Y D E Q+ A +GA A +G + + R
Sbjct: 7 EDLLEYSDNEQEIQVDATNAATESTEGAAGATDASATTEGDAAATTGADKRVPTLVSIPL 66
Query: 84 ---DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
FLLKPE+ RAI+DC ++ P S+ H +
Sbjct: 67 DSKYFLLKPELSRAIIDC-----------------------GFEHP--SEVQQHTIP--- 98
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY
Sbjct: 99 ----QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEY 154
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLK 258
RFSKYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR+K ++LS +K
Sbjct: 155 LRFSKYMPDVKTAVFYGGTPINKDAELLKNKDTAPHIVVATPGRLKALVRDKYIDLSHVK 214
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+F++DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++V
Sbjct: 215 NFVIDECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFV 274
Query: 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDEAKLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQV+IFVKS R L+ LL+ N
Sbjct: 275 DDEAKLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTNRANELTKLLNASN 334
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA+++H M QEER+ +Y+ FKDF
Sbjct: 335 FPAITVHGHMKQEERIARYKAFKDFEKRICVSTDVFGRGIDIERINLAINYDLTSEPDQY 394
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + + + ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 395 LHRVGRAGRFGTKGLAISFVASKEEEEVLAKIQERFDVKIAEFPEEGIDPSTYL 448
>gi|119623810|gb|EAX03405.1| hCG2005638, isoform CRA_b [Homo sapiens]
Length = 320
Score = 387 bits (993), Expect = e-105, Method: Compositional matrix adjust.
Identities = 193/284 (67%), Positives = 217/284 (76%), Gaps = 46/284 (16%)
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKM
Sbjct: 34 DVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKM 93
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHG
Sbjct: 94 LEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHG 153
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
LQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM
Sbjct: 154 LQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGM 213
Query: 389 TQEERLKKYQEFKDFH-------------------------------------------- 404
QEERL +YQ+FKDF
Sbjct: 214 PQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRF 273
Query: 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 274 GTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 317
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 231 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 278
>gi|258569076|ref|XP_002585282.1| ATP-dependent RNA helicase SUB2 [Uncinocarpus reesii 1704]
gi|237906728|gb|EEP81129.1| ATP-dependent RNA helicase SUB2 [Uncinocarpus reesii 1704]
Length = 564
Score = 386 bits (992), Expect = e-104, Method: Compositional matrix adjust.
Identities = 190/349 (54%), Positives = 249/349 (71%), Gaps = 49/349 (14%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY RFSK
Sbjct: 215 AILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSK 274
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
Y+ ++K VF+GG P+QKD E L + + P IVVGTPGR+ ALVR KKL+L +K F+LD
Sbjct: 275 YLPDVKTAVFYGGTPMQKDIETLSSKDTYPNIVVGTPGRLNALVREKKLSLRNIKAFVLD 334
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q++MRRDVQEIFR++P KQV+MFSATLS+EIRP+CKKFM +P+EVYVDD+ K
Sbjct: 335 ECDKMLDQIDMRRDVQEIFRATPAEKQVLMFSATLSQEIRPICKKFMRNPLEVYVDDDTK 394
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+++KL E+EKN+KL ELLD LEFNQV+IFVKS +R L LL E NFP+++
Sbjct: 395 LTLHGLQQYFIKLSESEKNRKLNELLDNLEFNQVIIFVKSTSRANELDKLLRECNFPSIA 454
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y+EFK+F+
Sbjct: 455 VHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVG 514
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F S E+D K+L +++ RF+V++ E P+E +D STY+
Sbjct: 515 RAGRFGTKGLSISFVSSEDDMKVLKDIEKRFEVALPEYPEEGVDASTYM 563
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 477 RICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGL 524
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 14/76 (18%)
Query: 37 MADNDDLLDYEDEE--------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82
M+ +DL+DY DEE G + + KG+YV +HS+GF
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATAAAPATNGAAAKKGDLTVAGARADKKGSYVGVHSTGF 60
Query: 83 RDFLLKPEILRAIVDC 98
RDFLLK E+LRAI DC
Sbjct: 61 RDFLLKGELLRAITDC 76
>gi|312097317|ref|XP_003148938.1| hypothetical protein LOAG_13381 [Loa loa]
Length = 286
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/318 (62%), Positives = 227/318 (71%), Gaps = 33/318 (10%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E + A + A K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 2 DEDQLLDYE-EEQEETTDGNKAENGSATDKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 60
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMDI+CQAKS
Sbjct: 61 G--------------FEHPSEVQHECIPQ------------------AILGMDIVCQAKS 88
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY+ +++ VFFGG
Sbjct: 89 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYIPGVRIAVFFGG 148
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L +K+F+LDECDKM+ +MRRDV
Sbjct: 149 IPIKKDEETLKNNTPHIVVGTPGRTLQLARQGSLKLKNIKYFVLDECDKMIGDNDMRRDV 208
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEI + +P KQVMMFSATL +++R VCKKFM DPMEVYVDDEAKLTLHGLQQHYVKLKE
Sbjct: 209 QEIVKMTPQEKQVMMFSATLPRDLRVVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKLKE 268
Query: 339 NEKNKKLFELLDVLEFNQ 356
EKNKKL ELLD LEFNQ
Sbjct: 269 TEKNKKLLELLDQLEFNQ 286
>gi|398397223|ref|XP_003852069.1| hypothetical protein MYCGRDRAFT_104368 [Zymoseptoria tritici
IPO323]
gi|339471950|gb|EGP87045.1| hypothetical protein MYCGRDRAFT_104368 [Zymoseptoria tritici
IPO323]
Length = 457
Score = 385 bits (990), Expect = e-104, Method: Compositional matrix adjust.
Identities = 198/387 (51%), Positives = 265/387 (68%), Gaps = 47/387 (12%)
Query: 38 ADNDDLLDYEDEE------NTEQIVADG---AGD--ALAKQKEVKGAYVSIHSSGFRDFL 86
A +DL+DY DEE T + A+G GD A + KG+YV IHS+ FRDFL
Sbjct: 3 AGEEDLIDYSDEELQPNEATTGAVGANGEAKKGDLSANGGADKAKGSYVGIHSTSFRDFL 62
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+L+AI DC F ++++ I +A
Sbjct: 63 LKPELLKAITDCG--------FEHPSEVQQNCI------------------------PQA 90
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+LG D+LCQAKSG+GKTAVFVL+TLQQ+E + V VLV+CHTRELAFQI EY RFSKY
Sbjct: 91 ILGTDVLCQAKSGLGKTAVFVLSTLQQMEPVNGEVSVLVLCHTRELAFQIKNEYIRFSKY 150
Query: 207 MSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
M +K VF+GG I+++E+ LK TH P I+V TPGR+ ALVR KKL L ++ F+LD
Sbjct: 151 MPEVKTEVFYGGTDIKENEKLLKNKETH-PHIIVATPGRLNALVREKKLRLGSVQRFVLD 209
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+ +RP+CKKFM P+E+++DDE K
Sbjct: 210 ECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSATLSQAVRPICKKFMQTPLELFIDDEKK 269
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
L+LHGLQQ+Y+ KE+EKN++L +LLD L +NQV+IFVK+ R I L LL E NFP+++
Sbjct: 270 LSLHGLQQYYLNSKEDEKNRRLNDLLDELTYNQVIIFVKTSNRAIELDRLLRECNFPSIA 329
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAIT 410
++ + QEER+K+YQ FK++ K + ++
Sbjct: 330 VYGHLNQEERIKRYQAFKNYDKRICVS 356
Score = 74.7 bits (182), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/63 (53%), Positives = 42/63 (66%), Gaps = 15/63 (23%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPED---------------SDTYLHRVARAGRFGT 144
RI V+T++FGRG+DIER+N+ NYDMP+ +DTYLHRV RAGRFGT
Sbjct: 352 RICVSTDVFGRGIDIERINLAINYDMPDSPTNPGATDKETLNQAADTYLHRVGRAGRFGT 411
Query: 145 KAV 147
K V
Sbjct: 412 KGV 414
>gi|281202577|gb|EFA76779.1| DEAD/DEAH box helicase [Polysphondylium pallidum PN500]
Length = 426
Score = 385 bits (989), Expect = e-104, Method: Compositional matrix adjust.
Identities = 203/453 (44%), Positives = 281/453 (62%), Gaps = 82/453 (18%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++L +YED + ++ V + GD K K +V++HSSGFR+FLLKPE+ + I DC
Sbjct: 10 NELAEYEDSD--DETVQETNGDK--KIVSAKDTHVAMHSSGFREFLLKPELDKVIGDCG- 64
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
E + V N +P+ A+LG DI+CQAKSGM
Sbjct: 65 -------------FEHPSEVQNECIPQ------------------AILGHDIICQAKSGM 93
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220
GKTAVFVL+ LQQ++ + V L++CHTRELA+QI E++RF+KYMS +K V +GG+P
Sbjct: 94 GKTAVFVLSVLQQIDINPTGVVALILCHTRELAYQICDEFDRFTKYMSTVKTAVIYGGMP 153
Query: 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280
+Q ++ L+ P IV+GTPGR+L L LNL +KHFILDECD +LE L+MR+D+Q+
Sbjct: 154 VQTQKDMLRDRQPNIVIGTPGRVLQLASEHSLNLKSIKHFILDECDSLLESLDMRKDIQK 213
Query: 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE 340
I++ + TKQVMMFSATLS +IR VCKKFMH P E+Y++D +KLTLHGLQQ+YVKL E++
Sbjct: 214 IYKLTSPTKQVMMFSATLSDQIRGVCKKFMHVPFEIYINDGSKLTLHGLQQYYVKLTEDQ 273
Query: 341 KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400
KN+KL +LLD L+FNQVVIFVKSV R AL+++LSE F ++ IHR + Q ER+++Y++F
Sbjct: 274 KNRKLVDLLDSLDFNQVVIFVKSVERAKALNSILSEVGFASICIHRDLKQPERIEQYRKF 333
Query: 401 KDFH----------------------------------------------KGLAITFASD 414
K+F KGLAI+F +
Sbjct: 334 KNFQSRVMVATNIFGRGIDIERVNVVINYDMAESPDTYLHRVGRAGRFGTKGLAISFITA 393
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
D L+ VQ +F VS+ +LP++ID STY+ G
Sbjct: 394 AEDLTTLDQVQSKFVVSVKDLPEKIDPSTYMSG 426
>gi|259483083|tpe|CBF78163.1| TPA: ATP-dependent RNA helicase sub2 (EC 3.6.1.-)
[Source:UniProtKB/Swiss-Prot;Acc:Q5ASK8] [Aspergillus
nidulans FGSC A4]
Length = 369
Score = 385 bits (988), Expect = e-104, Method: Compositional matrix adjust.
Identities = 199/387 (51%), Positives = 252/387 (65%), Gaps = 49/387 (12%)
Query: 37 MADNDDLLDYEDEE---------------NTEQIVADGAGDALAKQKEVKGAYVSIHSSG 81
M+ +DL+DY DEE N Q DG + + KG+YV IHS+G
Sbjct: 1 MSHEEDLIDYSDEELQTTDAAATTATPAANGGQAKKDGELTVTGGRADKKGSYVGIHSTG 60
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
FRDFLLK E+LRAI DC F ++++V I
Sbjct: 61 FRDFLLKGELLRAITDCG--------FEHPSEVQQVCI---------------------- 90
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
A+L +D+LCQAKSG+GKTAVFVL TL QLE VLVMCHTRELA+QI EY
Sbjct: 91 --PTAILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSVLVMCHTRELAYQIKNEYA 148
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKH 259
RFSKY+ ++K VF+GG PIQKD E L + P I+VGTPGR+ ALVR+KKL+L +K
Sbjct: 149 RFSKYLPDVKTAVFYGGTPIQKDIEVLSNKDTFPNIIVGTPGRLNALVRDKKLSLRNVKA 208
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+++RP+CKKFM +P+EVYVD
Sbjct: 209 FVLDECDKMLDQIDMRRDVQEIFRATPTDKQVMMFSATLSQDVRPICKKFMRNPLEVYVD 268
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NF
Sbjct: 269 DDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKSTIRANELDKLLRECNF 328
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKG 406
P++++H G++ + Q + +
Sbjct: 329 PSIAVHSGVSPGRTYQALQRVQGIQQA 355
>gi|441594517|ref|XP_003272140.2| PREDICTED: spliceosome RNA helicase DDX39B [Nomascus leucogenys]
Length = 362
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 192/282 (68%), Positives = 215/282 (76%), Gaps = 46/282 (16%)
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
+V VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLE
Sbjct: 78 QVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 137
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQ
Sbjct: 138 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 197
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 198 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 257
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EERL +YQ+FKDF
Sbjct: 258 EERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGT 317
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 318 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 359
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 273 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 320
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/65 (64%), Positives = 50/65 (76%), Gaps = 5/65 (7%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDE--VETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDC 98
AIVDC
Sbjct: 59 AIVDC 63
>gi|428671965|gb|EKX72880.1| DEAD box ATP-dependent RNA helicase family member protein [Babesia
equi]
Length = 471
Score = 383 bits (984), Expect = e-104, Method: Compositional matrix adjust.
Identities = 214/486 (44%), Positives = 287/486 (59%), Gaps = 108/486 (22%)
Query: 35 SKMADNDDLLDYEDEE-----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLL 87
+K A +DL+DYE+EE +T+ ++ AG + V +G+YV+IH+SGFRDF L
Sbjct: 4 AKAAPTEDLVDYEEEESEKIISTKDVIKSAAGKKGGRSDGVMGRGSYVAIHASGFRDFFL 63
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPEILRAI D F + +T H A+
Sbjct: 64 KPEILRAISDAG---------------------FEHPSEVQHETIPH-----------AI 91
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLE---------------------TTDSNVYVLVM 186
G+DILCQAKSGMGKTAVFVL+ LQQ+E T++ + + +
Sbjct: 92 TGVDILCQAKSGMGKTAVFVLSILQQIEVEEGDVVTGGVKREADGEAKATSEPKIACIGI 151
Query: 187 CHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRIL 244
HTRELAFQI E++RFSKY+S ++ V +GG+PIQKD L T P I+VGTPGR+L
Sbjct: 152 SHTRELAFQIKNEFDRFSKYLSGVRCEVVYGGIPIQKDIAMLSDPTKCPHILVGTPGRLL 211
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL++ K LN+ ++HF+LDECDK LE+L+MR+DVQ IF S+P KQVM FSAT++ IR
Sbjct: 212 ALIKGKHLNVEGVRHFVLDECDKCLEKLDMRQDVQSIFMSTPKKKQVMFFSATMNSSIRD 271
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
+CK+FM P+EV+VDDE+KLTLHGL Q+Y+KL+E++KN+KL +LLD LEFNQV+IFVKSV
Sbjct: 272 LCKRFMQSPVEVFVDDESKLTLHGLLQYYIKLEESDKNRKLNDLLDSLEFNQVIIFVKSV 331
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
+R I L LLSE NFP+++IH G+ Q ER+ +Y +FK+F
Sbjct: 332 SRAITLDNLLSECNFPSIAIHAGLEQSERISRYTQFKNFDKRIMVATDLFGRGIDVERVN 391
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF + D+ L +VQ RF+V + E+P
Sbjct: 392 IVINYDMPDSTDSYLHRVGRAGRFGTKGLAITFVASPEDSSALADVQKRFEVDVPEMPQT 451
Query: 439 IDLSTY 444
ID S Y
Sbjct: 452 IDTSLY 457
Score = 89.4 bits (220), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 62/98 (63%), Gaps = 4/98 (4%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
RI+VAT+LFGRG+D+ERVNIV NYDMP+ +D+YLHRV RAGRFGTK L + + +
Sbjct: 373 RIMVATDLFGRGIDVERVNIVINYDMPDSTDSYLHRVGRAGRFGTKG-LAITFVASPEDS 431
Query: 160 MGKTAV---FVLATLQQLETTDSNVYVLVMCHTRELAF 194
V F + + +T D+++Y H E+A
Sbjct: 432 SALADVQKRFEVDVPEMPQTIDTSLYYKPAKHNPEIAI 469
>gi|2739119|gb|AAB94615.1| BAT1 [Homo sapiens]
gi|340744016|dbj|BAK53243.1| HLA-B associated transcript 1 [Callithrix jacchus]
Length = 284
Score = 383 bits (983), Expect = e-103, Method: Compositional matrix adjust.
Identities = 192/281 (68%), Positives = 214/281 (76%), Gaps = 46/281 (16%)
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQ
Sbjct: 1 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 60
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ
Sbjct: 61 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQ 120
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QE
Sbjct: 121 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 180
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 181 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 240
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 241 GLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 281
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 195 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 242
>gi|145356615|ref|XP_001422523.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582766|gb|ABP00840.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 358
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 190/347 (54%), Positives = 236/347 (68%), Gaps = 46/347 (13%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFV+ LQQL+ V +VMCHTRELA+QIS E+ERFS
Sbjct: 10 QAILGMDVLCQAKSGMGKTAVFVITVLQQLDPVPGEVGAVVMCHTRELAYQISHEFERFS 69
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ ++ V FGG+PI + +E LK P IVV TPGR+ AL ++ LNL HF+LDE
Sbjct: 70 TFLGDVTTAVVFGGIPIAQQKEQLKLQPPNIVVATPGRLKALAQDGTLNLKKCAHFVLDE 129
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLE ++MR DVQEIF+ +PH KQVMMF+ATLSKE+R +CKKFM+DPME++VDDE KL
Sbjct: 130 CDKMLEAVDMRADVQEIFKMTPHDKQVMMFTATLSKELRALCKKFMNDPMEIFVDDETKL 189
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGL QHYVKL+E EKN+KL +LLD L FNQVVIFV SV RC AL LL E NFP+++I
Sbjct: 190 TLHGLVQHYVKLEEAEKNRKLNDLLDSLMFNQVVIFVSSVQRCKALDKLLQECNFPSIAI 249
Query: 385 HRGMTQEERLKKYQEFKD------------------------------------FH---- 404
H M QEERL +Y+ FKD H
Sbjct: 250 HGSMGQEERLARYKSFKDGDKRILVATDLVARGIDIERVNIVINYDMPSSADTYLHRVGR 309
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLA+TF + D ++L++V +RF+V I ELPDEID STY+
Sbjct: 310 AGRFGTKGLAVTFVASSEDTEVLSSVHERFEVEIKELPDEIDQSTYM 356
Score = 85.5 bits (210), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 37/48 (77%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L RG+DIERVNIV NYDMP +DTYLHRV RAGRFGTK +
Sbjct: 271 RILVATDLVARGIDIERVNIVINYDMPSSADTYLHRVGRAGRFGTKGL 318
>gi|1749748|dbj|BAA13931.1| unnamed protein product [Schizosaccharomyces pombe]
Length = 339
Score = 382 bits (981), Expect = e-103, Method: Compositional matrix adjust.
Identities = 188/339 (55%), Positives = 240/339 (70%), Gaps = 48/339 (14%)
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVL+TLQQ+E D V VLV+CHTRELAFQI EY RFSKY+ +++ VF+
Sbjct: 1 KSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFSKYLPDVRTAVFY 60
Query: 217 GGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
GG+ I++D E K + +P IVV TPGR+ ALVR K L ++ +KHF+LDECDK+LE ++M
Sbjct: 61 GGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKNLKVNSVKHFVLDECDKLLESVDM 120
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRD+QE+FR++P KQVMMFSATLS EIRP+CKKFM +P+E+YVDDE KLTLHGLQQHYV
Sbjct: 121 RRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHYV 180
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
KL+E KN+K+ +LLD LEFNQVVIFVKSV+R L LL E NFP++ IH G+ QEER+
Sbjct: 181 KLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSICIHGGLPQEERI 240
Query: 395 KKYQEFKDFH----------------------------------------------KGLA 408
K+Y+ FKDF KGLA
Sbjct: 241 KRYKAFKDFDKRICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLA 300
Query: 409 ITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
ITF+S E D++IL+ +Q+RF+V+I+ELPDEID+ +Y+
Sbjct: 301 ITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYMNA 339
Score = 85.1 bits (209), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTK +
Sbjct: 252 RICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGL 299
>gi|326483516|gb|EGE07526.1| ATP-dependent RNA helicase SUB2 [Trichophyton equinum CBS 127.97]
Length = 396
Score = 382 bits (980), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 244/349 (69%), Gaps = 49/349 (14%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY RFSK
Sbjct: 47 AILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYARFSK 106
Query: 206 YMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F+LD
Sbjct: 107 YMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVGTPGRLNALLRDKKLSLRNIKSFVLD 166
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRP+CKKFM +P+EVYVDD+ K
Sbjct: 167 ECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRNPLEVYVDDDTK 226
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+++
Sbjct: 227 LTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFPSIA 286
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y+EFK+F+
Sbjct: 287 VHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVG 346
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 347 RAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 395
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 309 RICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGL 356
>gi|302500115|ref|XP_003012052.1| hypothetical protein ARB_01808 [Arthroderma benhamiae CBS 112371]
gi|291175607|gb|EFE31412.1| hypothetical protein ARB_01808 [Arthroderma benhamiae CBS 112371]
Length = 620
Score = 381 bits (979), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 244/349 (69%), Gaps = 49/349 (14%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY RFSK
Sbjct: 271 AILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYARFSK 330
Query: 206 YMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F+LD
Sbjct: 331 YMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVGTPGRLNALLRDKKLSLRNIKSFVLD 390
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRP+CKKFM +P+EVYVDD+ K
Sbjct: 391 ECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRNPLEVYVDDDTK 450
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+++
Sbjct: 451 LTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFPSIA 510
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y+EFK+F+
Sbjct: 511 VHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVG 570
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 571 RAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 619
Score = 83.6 bits (205), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 533 RICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGL 580
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGAGDALAKQ--------KEVKGAYVSIHSSGF 82
MA +DL+DY DEE GDA K + KG+YV IHS+GF
Sbjct: 80 MATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTVGGAGADKKGSYVGIHSTGF 139
Query: 83 RDFLLKPEILRAIVDC 98
RDF LK E+LRAI DC
Sbjct: 140 RDFYLKAELLRAITDC 155
>gi|302661414|ref|XP_003022375.1| hypothetical protein TRV_03502 [Trichophyton verrucosum HKI 0517]
gi|291186317|gb|EFE41757.1| hypothetical protein TRV_03502 [Trichophyton verrucosum HKI 0517]
Length = 541
Score = 381 bits (978), Expect = e-103, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 244/349 (69%), Gaps = 49/349 (14%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY RFSK
Sbjct: 192 AILNVDVLCQAKSGLGKTAVFALTTLHQLEPVPGTCSILVMCPTRELAYQIKDEYARFSK 251
Query: 206 YMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F+LD
Sbjct: 252 YMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVGTPGRLNALLRDKKLSLRNIKSFVLD 311
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRP+CKKFM +P+EVYVDD+ K
Sbjct: 312 ECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRNPLEVYVDDDTK 371
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+++
Sbjct: 372 LTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFPSIA 431
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y+EFK+F+
Sbjct: 432 VHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVG 491
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 492 RAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 540
Score = 83.2 bits (204), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 454 RICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGL 501
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 34/76 (44%), Positives = 40/76 (52%), Gaps = 14/76 (18%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGAGDALAKQ--------KEVKGAYVSIHSSGF 82
MA +DL+DY DEE GDA K + KG+YV IHS+GF
Sbjct: 1 MATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTVGGAGADKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDC 98
RDF LK E+LRAI DC
Sbjct: 61 RDFYLKAELLRAITDC 76
>gi|3712663|gb|AAC63046.1| DEAD-box protein [Homo sapiens]
Length = 284
Score = 379 bits (974), Expect = e-102, Method: Compositional matrix adjust.
Identities = 191/281 (67%), Positives = 213/281 (75%), Gaps = 46/281 (16%)
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQ
Sbjct: 1 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 60
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +P KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ
Sbjct: 61 LDMRRDVQEIFRMTPXEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQ 120
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QE
Sbjct: 121 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQE 180
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 181 ERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTK 240
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
GLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 241 GLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 281
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 195 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 242
>gi|449015899|dbj|BAM79301.1| ATP-dependent RNA helicase p47 [Cyanidioschyzon merolae strain 10D]
Length = 455
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 209/474 (44%), Positives = 287/474 (60%), Gaps = 94/474 (19%)
Query: 34 HSKMADNDDLLDYED--EENT-----------EQIVADGAGDALAKQKEVKGAYVSIHSS 80
H+++ ++L+DYE+ EEN + A+ A+ + KG Y S+HS+
Sbjct: 12 HAEVPPEEELVDYEEDQEENALAEETNDAAADQVADAESTEGQQAEPQLAKGTYASLHSA 71
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
FRDFLL+ E+LRAI DC E + V +P+
Sbjct: 72 NFRDFLLRSELLRAIEDCG--------------FESASEVQVQALPQ------------- 104
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHTRELAFQISK 198
AVLG D+L QAKSG+GKTAVFVLA LQQLE ++++V +++ HTRELA+QI
Sbjct: 105 -----AVLGTDVLVQAKSGLGKTAVFVLAILQQLEPEKSENSVSAVILAHTRELAYQIKN 159
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL-VRNKKLNLSLL 257
E+ RFSKY+ +++ GVF+GG PI++ E L + P IVVGTPGR+L L V+ K L+LS +
Sbjct: 160 EFVRFSKYLPDVRCGVFYGGEPIKQQLEQLASSVPHIVVGTPGRLLDLAVKRKALDLSKV 219
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
+ F++DECDK+LE L+MR DVQEIF+ +P KQVMMFSATL E R + +KFMH+P E++
Sbjct: 220 RFFVIDECDKVLEMLDMRADVQEIFKMTPRNKQVMMFSATLPPETRSIARKFMHNPHEIF 279
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+DDE+KLTLHGL Q+Y+KL+E EKN+KL +LLD LEFNQ+VIFV+SV R ++ +L E
Sbjct: 280 IDDESKLTLHGLLQYYLKLEETEKNRKLNDLLDALEFNQLVIFVRSVQRAKFINQMLKES 339
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFP+++IH M QEER+K+Y+ FKDF
Sbjct: 340 NFPSITIHSAMPQEERIKRYRAFKDFEARILVSTDLFGRGVDVERVNVVINYDMPADSDQ 399
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI+F S E D+ +L VQ+RF V+I ELP+ ID S Y+
Sbjct: 400 YLHRVGRAGRFGTKGLAISFISSEEDSAVLEAVQNRFVVNIPELPESIDPSAYM 453
>gi|326469268|gb|EGD93277.1| ATP-dependent RNA helicase sub2 [Trichophyton tonsurans CBS 112818]
Length = 440
Score = 379 bits (973), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/472 (45%), Positives = 279/472 (59%), Gaps = 96/472 (20%)
Query: 37 MADNDDLLDYEDEE------NTEQIVADGAGDALAKQ--------KEVKGAYVSIHSSGF 82
MA +DL+DY DEE GDA K + KG+YV IHS+GF
Sbjct: 1 MATEEDLIDYSDEELQTTDAAAAPAAPAANGDASKKGDLTVGGAGADKKGSYVGIHSTGF 60
Query: 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142
RDF LK E+LRAI DC F ++++V I
Sbjct: 61 RDFYLKAELLRAITDCG--------FEHPSEVQQVCI----------------------- 89
Query: 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202
T ++ + Q +S K + F L QLE +LVMC TRELA+QI EY R
Sbjct: 90 PTAILMSTSLSSQVRSR--KDSCFCLDHSPQLEPVPGTCSILVMCPTRELAYQIKDEYAR 147
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
FSKYM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F
Sbjct: 148 FSKYMPDVKTAVFYGGTPIQKDIEILSSKDTHPNIIVGTPGRLNALLRDKKLSLRNIKSF 207
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRP+CKKFM +P+EVYVDD
Sbjct: 208 VLDECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPICKKFMRNPLEVYVDD 267
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP
Sbjct: 268 DTKLTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFP 327
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
++++H G++QEER+K+Y+EFK+F+
Sbjct: 328 SIAVHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLH 387
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+E +D STY+
Sbjct: 388 RVGRAGRFGTKGLSISFVSDEENMQVLKDIEKRFEVALPEYPEEGVDASTYM 439
>gi|156083913|ref|XP_001609440.1| eIF-4A-like DEAD family RNA helicase [Babesia bovis T2Bo]
gi|154796691|gb|EDO05872.1| eIF-4A-like DEAD family RNA helicase, putative [Babesia bovis]
Length = 472
Score = 379 bits (972), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/479 (43%), Positives = 282/479 (58%), Gaps = 107/479 (22%)
Query: 41 DDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPEILRA 94
+DL+DYE++E + ++ GA + ++ +G+YV+IH+SGFRDF LKPEILRA
Sbjct: 11 EDLVDYEEQEAGQVTSHNVIKSGASSKVGREDGTMGRGSYVAIHASGFRDFFLKPEILRA 70
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I D F + +T H A+ G+DILC
Sbjct: 71 IGDAG---------------------FEHPSEVQHETIPH-----------AITGVDILC 98
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSN---------------------VYVLVMCHTRELA 193
QAKSGMGKTAVFVL+ LQQL+ + V L + HTRELA
Sbjct: 99 QAKSGMGKTAVFVLSVLQQLDVQEDGTLAGGVKRDAGGEAVAPSADRVACLGISHTRELA 158
Query: 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKK 251
+QI E++RFSKYM+ ++ V +GG+PI +D E LK P I+VGTPGR+LAL++ K
Sbjct: 159 YQIKNEFDRFSKYMNGVRCEVVYGGVPISRDIEMLKDPEKCPHILVGTPGRLLALIKGKH 218
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
LN+ ++HF+LDECDK LE+L+MR DVQ IF S+P KQVM FSAT++ ++R VCK+F+
Sbjct: 219 LNMDGIRHFVLDECDKCLEKLDMRADVQSIFMSTPKKKQVMFFSATMNNDVRDVCKRFVR 278
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
P+EV+VDDE+KLTLHGL Q+YVKL E++KN+KL +LLD LEFNQV+IFVKSV+R L
Sbjct: 279 SPVEVFVDDESKLTLHGLLQYYVKLSESDKNRKLNDLLDNLEFNQVIIFVKSVSRAQTLD 338
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------- 404
LL+E NFP+++IH G+ Q+ER+ +Y +FK+F
Sbjct: 339 NLLNECNFPSIAIHAGLDQDERIARYTQFKNFDKRIMVSTDLFGRGIDVERVNIVINYDM 398
Query: 405 -------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF + E D+ L +VQ RF+V I E+P+ ID S Y
Sbjct: 399 PDSTDSYLHRVGRAGRFGTKGLAITFVATEADSTALADVQKRFEVDIPEMPESIDTSLY 457
>gi|212537399|ref|XP_002148855.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces marneffei
ATCC 18224]
gi|210068597|gb|EEA22688.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces marneffei
ATCC 18224]
Length = 349
Score = 378 bits (971), Expect = e-102, Method: Compositional matrix adjust.
Identities = 190/348 (54%), Positives = 242/348 (69%), Gaps = 49/348 (14%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRELA+QI EY RFSKY
Sbjct: 1 MLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRELAYQIKNEYARFSKY 60
Query: 207 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ +K VF+GG P+QKD E L K P IVVGTPGR+ ALVR+KKL+L +K F+LDE
Sbjct: 61 LPQVKTAVFYGGTPMQKDIELLSNKETRPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDE 120
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVYVDD+ KL
Sbjct: 121 CDKMLDQIDMRRDVQEIFRNTPAEKQVMMFSATLSQEVRPICKKFMRNPLEVYVDDDTKL 180
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP++++
Sbjct: 181 TLHGLQQYYIKLSEQEKNRKLSELLDNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAV 240
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G++QEER+K+Y+EFK+F+
Sbjct: 241 HSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGR 300
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 301 AGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDASTYM 348
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYD+P D+D+YLHRV RAGRFGTK +
Sbjct: 262 RICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGL 309
>gi|190345404|gb|EDK37283.2| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 370
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 242/350 (69%), Gaps = 49/350 (14%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFS
Sbjct: 19 QSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFS 78
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG+PI KD E LK + P IVV TPGR+ ALV K + L+ +K F++
Sbjct: 79 KYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVI 138
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE ++MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEA
Sbjct: 139 DECDKVLEAIDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEA 198
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS +R L+ LL NFP++
Sbjct: 199 KLTLHGLQQYYLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTSRANELNKLLVASNFPSI 258
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FK+F+
Sbjct: 259 AVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRV 318
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 319 GRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 368
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+P ++D YLHRV RAGRFGTK +
Sbjct: 282 RICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGL 329
>gi|406699078|gb|EKD02297.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
8904]
Length = 391
Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust.
Identities = 213/427 (49%), Positives = 270/427 (63%), Gaps = 65/427 (15%)
Query: 39 DNDDLLDYEDEENTEQIV----------ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
D ++L+DY+DE + DG GDA + KG+YV IHS+GFRDFLLK
Sbjct: 8 DPEELVDYDDEAEEPYVAPTTAAPAAAGVDG-GDA-----DKKGSYVGIHSTGFRDFLLK 61
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PEILRAI D + E + V +P+ A+L
Sbjct: 62 PEILRAISD--------------LGFEHPSEVQQECIPQ------------------AIL 89
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+LCQAKSGMGKTAVFVLA+LQQLE D V ++V+CHTRELA+QI E+ RFSKYM
Sbjct: 90 GTDVLCQAKSGMGKTAVFVLASLQQLEPVDGEVSIIVLCHTRELAYQIRNEFTRFSKYMP 149
Query: 209 NIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++ VF+GG PI D+E L K P IVVGTPGR++ALVR+KKLN S +KHF+LDECD
Sbjct: 150 EVRTSVFYGGTPISADQEILASKEKCPHIVVGTPGRMMALVRDKKLNASKVKHFVLDECD 209
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KMLEQL+MRRDVQE+FR++PH KQVMMFSATLSK+IR CKKFM +YVDDE KLTL
Sbjct: 210 KMLEQLDMRRDVQEVFRATPHHKQVMMFSATLSKDIRATCKKFMQ---SIYVDDETKLTL 266
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQ--------VVIFVKSVTRCIALSTLLSEQN 378
HGLQQ+Y+KL+E EKN+KL +LLD LEFNQ +++ R I + + N
Sbjct: 267 HGLQQYYLKLEEKEKNRKLNDLLDNLEFNQQFKAFEKRILVATDIFGRGIDVERVNVVIN 326
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
+ A + R+ + F KGLAITF S E D ++L +Q+RF V+I LPD
Sbjct: 327 YDAPADADSYLH--RVGRAGRFGT--KGLAITFVSSEADQEVLQKIQERFTVAIPTLPDT 382
Query: 439 IDLSTYI 445
+D +TY+
Sbjct: 383 VDPATYM 389
>gi|296814418|ref|XP_002847546.1| ATP-dependent RNA helicase sub2 [Arthroderma otae CBS 113480]
gi|238840571|gb|EEQ30233.1| ATP-dependent RNA helicase sub2 [Arthroderma otae CBS 113480]
Length = 561
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 189/349 (54%), Positives = 243/349 (69%), Gaps = 49/349 (14%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVF L TL QLE +LVMC TRELA+QI EY RFSK
Sbjct: 212 AILNVDVLCQAKSGLGKTAVFALTTLHQLEPVAGTCSILVMCPTRELAYQIKDEYARFSK 271
Query: 206 YMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM ++K VF+GG PIQKD E L K +P I+VGTPGR+ AL+R+KKL+L +K F+LD
Sbjct: 272 YMPDVKTAVFYGGTPIQKDIEILSSKETHPNIIVGTPGRLNALLRDKKLSLRNIKAFVLD 331
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q +MR DVQEIFRS+P KQVMMFSATL++EIRPVCKKFM +P+EVYVDD+ K
Sbjct: 332 ECDKMLDQKDMRADVQEIFRSTPADKQVMMFSATLAQEIRPVCKKFMRNPLEVYVDDDTK 391
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS R L LL E NFP+++
Sbjct: 392 LTLHGLQQYYIKLSEAEKNRKLNELLDNLEFNQVIIFVKSTVRATELDKLLRECNFPSIA 451
Query: 384 IHRGMTQEERLKKYQEFKDFH--------------------------------------- 404
+H G++QEER+K+Y+EFK+F+
Sbjct: 452 VHSGVSQEERIKRYREFKEFNKRICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVG 511
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F SDE + ++L +++ RF+V++ E P+ +D STY+
Sbjct: 512 RAGRFGTKGLSISFVSDEENLQVLKDIEKRFEVALPEYPEGGVDASTYM 560
Score = 83.2 bits (204), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 474 RICVATDVFGRGIDIERINLAINYDMPIDADSYLHRVGRAGRFGTKGL 521
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 40/82 (48%), Gaps = 26/82 (31%)
Query: 37 MADNDDLLDYEDEE--------------------NTEQIVADGAGDALAKQKEVKGAYVS 76
MA +DL+DY DEE + GAG + KG+YV
Sbjct: 1 MATEEDLIDYSDEELQTTDAAAAPAAPAANGDAAKKGDLTVAGAG------ADKKGSYVG 54
Query: 77 IHSSGFRDFLLKPEILRAIVDC 98
IHS+GFRDF LK E+LRAI DC
Sbjct: 55 IHSTGFRDFYLKAELLRAITDC 76
>gi|302419503|ref|XP_003007582.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
gi|261353233|gb|EEY15661.1| ATP-dependent RNA helicase SUB2 [Verticillium albo-atrum VaMs.102]
Length = 420
Score = 377 bits (968), Expect = e-102, Method: Compositional matrix adjust.
Identities = 211/462 (45%), Positives = 276/462 (59%), Gaps = 107/462 (23%)
Query: 41 DDLLDYEDEE-NTEQIVADGAGD-------ALAKQKEVKGAYVSIHSSGFRDFLLKPEIL 92
+DL+DY DEE T + A G A + KG+YV IH++GFRDFLLKPE+L
Sbjct: 7 EDLIDYSDEELQTNETAAASNGKKGAADAAATGNSVDKKGSYVGIHATGFRDFLLKPELL 66
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
RAI DC F ++++ I +A+LG DI
Sbjct: 67 RAIGDCG--------FEHPSEVQQTCI------------------------PQALLGGDI 94
Query: 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212
+CQAKSG+GKTAVFVL TLQQ+E V VLVMCHTRELAFQI EY RFSKYM +IK
Sbjct: 95 ICQAKSGLGKTAVFVLTTLQQVEPVAGEVSVLVMCHTRELAFQIRNEYNRFSKYMPDIKT 154
Query: 213 GVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
GVF+GG PIQKD E +K + P I+VGTPGR+ ALVR+K L L ++ F+LDECDKML+
Sbjct: 155 GVFYGGTPIQKDVETIKNKDTCPHIIVGTPGRLNALVRDKVLRLGSVRIFVLDECDKMLD 214
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
Q++MRRDVQEIFR++P KQVM+ +P E YVD++ KLTLHGLQ
Sbjct: 215 QIDMRRDVQEIFRATPTQKQVMI------------------NPTEHYVDEDTKLTLHGLQ 256
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y+KL+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++Q
Sbjct: 257 QYYIKLEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQ 316
Query: 391 EERLKKYQEFKDFH---------------------------------------------- 404
EER+++Y+EFKDF+
Sbjct: 317 EERIRRYKEFKDFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGT 376
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
KGLAI+F S + D ++L ++ RF+V++ E P D +D +TY+
Sbjct: 377 KGLAISFVSTDGDKEVLAAIEKRFEVALPEFPKDGVDPATYM 418
>gi|401889098|gb|EJT53038.1| ATP dependent RNA helicase [Trichosporon asahii var. asahii CBS
2479]
Length = 968
Score = 377 bits (967), Expect = e-102, Method: Compositional matrix adjust.
Identities = 205/396 (51%), Positives = 258/396 (65%), Gaps = 54/396 (13%)
Query: 60 AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
GDA + KG+YV IHS+GFRDFLLKPEILRAI D + E +
Sbjct: 136 GGDA-----DKKGSYVGIHSTGFRDFLLKPEILRAISD--------------LGFEHPSE 176
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
V +P+ A+LG D+LCQAKSGMGKTAVFVLA+LQQLE D
Sbjct: 177 VQQECIPQ------------------AILGTDVLCQAKSGMGKTAVFVLASLQQLEPVDG 218
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVV 237
V ++V+CHTRELA+QI E+ RFSKYM ++ VF+GG PI D+E L K P IVV
Sbjct: 219 EVSIIVLCHTRELAYQIRNEFTRFSKYMPEVRTSVFYGGTPISADQEILASKEKCPHIVV 278
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGR++ALVR+KKLN S +KHF+LDECDKMLEQL+MRRDVQE+FR++PH KQVMMFSAT
Sbjct: 279 GTPGRMMALVRDKKLNASKVKHFVLDECDKMLEQLDMRRDVQEVFRATPHHKQVMMFSAT 338
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ- 356
LSK+IR CKKFM +YVDDE KLTLHGLQQ+Y+KL+E EKN+KL +LLD LEFNQ
Sbjct: 339 LSKDIRATCKKFMQ---SIYVDDETKLTLHGLQQYYLKLEEKEKNRKLNDLLDNLEFNQQ 395
Query: 357 -------VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
+++ R I + + N+ A + + R+ + F KGLAI
Sbjct: 396 FKAFEKRILVATDIFGRGIDVERVNVVINYDAPA--DADSYLHRVGRAGRFGT--KGLAI 451
Query: 410 TFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
TF S E D ++L +Q+RF V+I LPD +D +TY+
Sbjct: 452 TFVSSEADQEVLQKIQERFTVAIPTLPDTVDPATYM 487
Score = 113 bits (283), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/162 (43%), Positives = 88/162 (54%), Gaps = 48/162 (29%)
Query: 39 DNDDLLDYEDEENTEQIV----------ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLK 88
D ++L+DY+DE + DG GDA + KG+YV IHS+GFRDFLLK
Sbjct: 8 DPEELVDYDDEAEEPYVAPTTAAPAAAGVDG-GDA-----DKKGSYVGIHSTGFRDFLLK 61
Query: 89 PEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
PEILRAI D + E + V +P+ A+L
Sbjct: 62 PEILRAISD--------------LGFEHPSEVQQECIPQ------------------AIL 89
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
G D+LCQAKSGMGKTAVFVLA+LQQLE D V ++V+CHTR
Sbjct: 90 GTDVLCQAKSGMGKTAVFVLASLQQLEPVDGEVSIIVLCHTR 131
>gi|242809323|ref|XP_002485345.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
gi|218715970|gb|EED15392.1| ATP dependent RNA helicase (Sub2), putative [Talaromyces stipitatus
ATCC 10500]
Length = 349
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 189/348 (54%), Positives = 242/348 (69%), Gaps = 49/348 (14%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+L D+LCQAKSG+GKTAVFVL TL L+ + V VLVMCHTRELA+QI EY RFSKY
Sbjct: 1 MLHSDLLCQAKSGLGKTAVFVLTTLHGLDPVEGEVQVLVMCHTRELAYQIKNEYARFSKY 60
Query: 207 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ +K VF+GG P+QKD E L K P IVVGTPGR+ ALVR+KKL+L +K F+LDE
Sbjct: 61 LPQVKTAVFYGGTPMQKDIEILSNKETRPNIVVGTPGRLNALVRDKKLSLRNVKAFVLDE 120
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EVYVDD+ KL
Sbjct: 121 CDKMLDQIDMRRDVQEIFRNTPAEKQVMMFSATLSQEVRPICKKFMRNPLEVYVDDDTKL 180
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L LL E NFP++++
Sbjct: 181 TLHGLQQYYIKLSEQEKNRKLSDLLDNLEFNQVIIFVKSTLRANELDKLLRECNFPSIAV 240
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G++QEER+K+Y+EFK+F+
Sbjct: 241 HSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGR 300
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLSTYI 445
KGL+I+F S E D K+L ++ RF+V++ E P+ +D STY+
Sbjct: 301 AGRFGTKGLSISFVSSEEDEKVLKEIEKRFEVALPEYPEGGVDASTYM 348
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYD+P D+D+YLHRV RAGRFGTK +
Sbjct: 262 RICVATDVFGRGIDIERINLAINYDLPGDADSYLHRVGRAGRFGTKGL 309
>gi|146419497|ref|XP_001485710.1| conserved hypothetical protein [Meyerozyma guilliermondii ATCC
6260]
Length = 370
Score = 376 bits (966), Expect = e-101, Method: Compositional matrix adjust.
Identities = 186/350 (53%), Positives = 241/350 (68%), Gaps = 49/350 (14%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++LG D+LCQAKSG+GKTAVFVL+TLQQL+ + LV+CHTRELA+QI EY RFS
Sbjct: 19 QSILGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEITTLVICHTRELAYQIRNEYARFS 78
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG+PI KD E LK + P IVV TPGR+ ALV K + L+ +K F++
Sbjct: 79 KYMPDVKTEVFYGGIPIAKDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVI 138
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE ++MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEA
Sbjct: 139 DECDKVLEAIDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEA 198
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++
Sbjct: 199 KLTLHGLQQYYLKLDEKEKNRKLADLLDSLEFNQVIIFVKSTLRANELNKLLVASNFPSI 258
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
++H M QEER+ +Y+ FK+F+
Sbjct: 259 AVHSAMPQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRV 318
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 319 GRAGRFGTKGLAISFVGSKEDEEVLEKIQSRFDVKITEFPEEGVDSSTYM 368
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+P ++D YLHRV RAGRFGTK +
Sbjct: 282 RICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGL 329
>gi|83317473|ref|XP_731176.1| DEAD/DEAH box helicase [Plasmodium yoelii yoelii 17XNL]
gi|23491131|gb|EAA22741.1| DEAD/DEAH box helicase, putative [Plasmodium yoelii yoelii]
Length = 497
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 213/491 (43%), Positives = 286/491 (58%), Gaps = 122/491 (24%)
Query: 41 DDLLDYEDEEN---TEQIVAD-----------GAGDALAKQKEVKGAYVSIHSSGFRDFL 86
D+L+DYED++N + + D G D+ A ++G+Y ++H+ GF+DF
Sbjct: 10 DELVDYEDDDNMLDNKDVKGDIGGNLLNNNNKGVNDSGA----MRGSYATVHTGGFKDFF 65
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+LRAI + F ++++ I A
Sbjct: 66 LKPELLRAISESG--------FEHPSEVQQETI------------------------PAA 93
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDS-----------------------NVYV 183
+ G DILCQAKSGMGKTAVFVL+ LQQLET DS N YV
Sbjct: 94 ITGTDILCQAKSGMGKTAVFVLSILQQLETNDSKDIKEEKDMNNANGDMNQNSGSQNKYV 153
Query: 184 --LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGTP 240
L + HTRELA+QI E++RFSKY+ N++ V +GG+ + K K +N P I++GTP
Sbjct: 154 RCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHVVLFKGNNIPHIIIGTP 213
Query: 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300
GRILAL+R K + ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++K
Sbjct: 214 GRILALIREKYMLTDKIQHFVLDECDKCLERLDMRGDVQKIFISTPLKKQVMFFSATMAK 273
Query: 301 EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360
E+R VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV+IF
Sbjct: 274 EMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIF 333
Query: 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------- 404
VKSVTR I L LL+E NFP++SIH G+ QEER+++Y +FK F
Sbjct: 334 VKSVTRAITLDKLLTECNFPSISIHGGLNQEERIERYDKFKKFENRILVSTDLFGRGIDI 393
Query: 405 ------------------------------KGLAITFASDENDAKILNNVQDRFDVSISE 434
KGLAITF S + D LN VQ RF+V+ISE
Sbjct: 394 ERINIVINYDMPENSDSYLHRVGRAGRFGTKGLAITFVSSQEDTLALNEVQTRFEVAISE 453
Query: 435 LPDEIDLSTYI 445
+P++ID + YI
Sbjct: 454 MPNKIDCNEYI 464
>gi|68073823|ref|XP_678826.1| helicase [Plasmodium berghei strain ANKA]
gi|56499417|emb|CAI04881.1| helicase, putative [Plasmodium berghei]
Length = 466
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/487 (43%), Positives = 284/487 (58%), Gaps = 114/487 (23%)
Query: 41 DDLLDYEDEEN---TEQIVAD-------GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPE 90
D+L+DYED++N + + D + + ++G+Y ++H+ GF+DF LKPE
Sbjct: 10 DELVDYEDDDNMLDNKDVKCDIGGNLLNNNNKGVNESGAMRGSYATVHTGGFKDFFLKPE 69
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI + F ++++ I A+ G
Sbjct: 70 LLRAISESG--------FEHPSEVQQETI------------------------PAAITGT 97
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDS-----------------------NVYV--LV 185
DILCQAKSGMGKTAVFVL+ LQQLET DS N YV L
Sbjct: 98 DILCQAKSGMGKTAVFVLSILQQLETNDSKDIKEEKDMNNASGDMNQNSGSQNKYVRCLG 157
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGTPGRIL 244
+ HTRELA+QI E++RFSKY+ N++ V +GG+ + K K +N P I++GTPGRIL
Sbjct: 158 IAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHVVLFKGNNIPHIIIGTPGRIL 217
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
AL+R K + ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++KE+R
Sbjct: 218 ALIREKYMLTDKIQHFVLDECDKCLERLDMRGDVQKIFISTPLKKQVMFFSATMAKEMRD 277
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV+IFVKSV
Sbjct: 278 VCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSV 337
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------- 404
TR I L LL+E NFP++SIH G+ QEER+++Y +FK F
Sbjct: 338 TRAITLDKLLTECNFPSISIHGGLNQEERIERYDKFKKFENRILVSTDLFGRGIDIERIN 397
Query: 405 --------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
KGLAITF S + D LN VQ RF+V+ISE+P++
Sbjct: 398 IVINYDMPENSDSYLHRVGRAGRFGTKGLAITFVSSQEDTLALNEVQTRFEVAISEMPNK 457
Query: 439 IDLSTYI 445
ID + YI
Sbjct: 458 IDCNEYI 464
>gi|403358218|gb|EJY78746.1| ATP-dependent RNA helicase DDX39 [Oxytricha trifallax]
Length = 432
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 206/465 (44%), Positives = 274/465 (58%), Gaps = 91/465 (19%)
Query: 37 MADNDDLLDY----------EDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFL 86
MAD + L DY ED+ Q G+ + K + Y I++SGF+DFL
Sbjct: 1 MADLNQLPDYDYDVDQPGFGEDQNQMNQGYGQ-QGNYFQQSKPL--MYSGINTSGFKDFL 57
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+ RAI++C F ++++ I +A
Sbjct: 58 LKPELQRAIIECG--------FEHPSEVQQECI------------------------PQA 85
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+G+DILCQAKSGMGKTAVFVL TL QL+ + VLV+CHTRELA QI KEY+RF+KY
Sbjct: 86 SMGVDILCQAKSGMGKTAVFVLTTLHQLDQEPKPLTVLVLCHTRELAHQIKKEYDRFTKY 145
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
+ + V +GG PIQ ++ L+ P I+VGTPGR LALV+++ L LK+F+LDECD
Sbjct: 146 LDKVSCEVIYGGQPIQTHQKLLQDKPPTIIVGTPGRTLALVKSQHLKFENLKYFVLDECD 205
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
KML +L+MR+DVQ IF+ +P+ KQVMMFSATL ++IR VCKKFM +P E+Y+D++ KLTL
Sbjct: 206 KMLSELDMRQDVQSIFKMTPYQKQVMMFSATLGQDIRKVCKKFMKNPFEIYIDNDIKLTL 265
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+ VKL E+ K KKL ELLD L FNQV+IFVK+ R ALS LL +QNFP+ IH
Sbjct: 266 HGLQQYTVKLAEDSKTKKLIELLDSLLFNQVIIFVKTSQRAEALSKLLLKQNFPSTFIHG 325
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
G+ Q+ER+K++Q FK+F
Sbjct: 326 GLPQDERIKRFQNFKEFKQRIMVATDLFGRGIDIEKINIVFNYDMPESSDQYLHRVARAG 385
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAI+F + + D +IL Q RF+V + ELP+ ID STY+
Sbjct: 386 RFGTKGLAISFVTTKEDNEILEETQKRFEVKVGELPNSIDTSTYM 430
>gi|124801080|ref|XP_001349607.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
gi|3845186|gb|AAC71878.1| DEAD box helicase, UAP56 [Plasmodium falciparum 3D7]
gi|156072122|gb|ABU45412.1| DEAD-box helicase 1 [Plasmodium falciparum]
Length = 457
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 204/478 (42%), Positives = 282/478 (58%), Gaps = 105/478 (21%)
Query: 41 DDLLDYEDEEN------TEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
D+L+DYED+EN + + + + K ++G+Y ++H+ GF+DF LKPE+LRA
Sbjct: 10 DELVDYEDDENILDSKDVKGNLGNNILNNNNKGGAMRGSYATVHTGGFKDFFLKPELLRA 69
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I + F ++++ I A+ G DILC
Sbjct: 70 ISESG--------FEHPSEVQQETI------------------------PAAITGTDILC 97
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSN--------------------VYVLVMCHTRELAF 194
QAKSGMGKTAVFVL+ LQQL+T ++ V L + HTRELA+
Sbjct: 98 QAKSGMGKTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLAHTRELAY 157
Query: 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGTPGRILALVRNKKLN 253
QI E++RFSKY+ N++ V +GG+ + K + K N P I++GTPGRILAL+R K L
Sbjct: 158 QIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRILALIREKYLI 217
Query: 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++KE+R VCKKF+ +P
Sbjct: 218 TDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVCKKFLQNP 277
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV+IFVKSVTR I L L
Sbjct: 278 VEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTRAITLDKL 337
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------- 404
L+E NFP+++IH G+ Q+ER+++Y +FK F
Sbjct: 338 LTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVSTDLFGRGIDIERVNIVINYDMPE 397
Query: 405 -----------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLA+TF S + D LN VQ RF+V+ISE+P++ID + YI
Sbjct: 398 NSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYI 455
>gi|255645017|gb|ACU23008.1| unknown [Glycine max]
Length = 310
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 187/305 (61%), Positives = 222/305 (72%), Gaps = 32/305 (10%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 36 KKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ--- 78
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTR
Sbjct: 79 ---------------AILGMDVICQAKSGMGKTAVFVLSTLQQVDPVPGQVAALVLCHTR 123
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK 250
ELA+QI E+ERFS Y+ +IK VF+GG+ I+ +E LK P IVVGTPGRILAL R+K
Sbjct: 124 ELAYQICHEFERFSTYLPDIKAAVFYGGVNIKVHKELLKNECPHIVVGTPGRILALARDK 183
Query: 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310
L L ++HFILDECDKMLE L+MRRDVQEIF+ +PH +QVMMFSATLSKEIRPVCKKFM
Sbjct: 184 DLGLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDRQVMMFSATLSKEIRPVCKKFM 243
Query: 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIAL 370
DPME+YVDDEAKLTLHGL QHY+KL+E EKN+KL +LLD L+FNQVVIFVKSV+R L
Sbjct: 244 QDPMEIYVDDEAKLTLHGLVQHYIKLQETEKNRKLNDLLDALDFNQVVIFVKSVSRAAEL 303
Query: 371 STLLS 375
+ LL
Sbjct: 304 NKLLC 308
>gi|390371118|dbj|GAB64999.1| eIF-4A-like DEAD family RNA helicase [Plasmodium cynomolgi strain
B]
Length = 472
Score = 368 bits (945), Expect = 3e-99, Method: Compositional matrix adjust.
Identities = 203/493 (41%), Positives = 280/493 (56%), Gaps = 120/493 (24%)
Query: 41 DDLLDYEDEENT----------EQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPE 90
D+L+DYED+EN + + + + + ++G+Y ++H+ GF+DF LKPE
Sbjct: 10 DELVDYEDDENILDAKDVKGNLDSSLLNNNSKGVNENGAMRGSYATVHTGGFKDFFLKPE 69
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150
+LRAI + F ++++ I A+ G
Sbjct: 70 LLRAISESG--------FEHPSEVQQETI------------------------PAAITGT 97
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSN------------------------------ 180
DILCQAKSGMGKTAVFVL+ LQQLET D
Sbjct: 98 DILCQAKSGMGKTAVFVLSILQQLETNDGKDIKEEKEMNNTTSNNIGGDLTNGNGAPKNK 157
Query: 181 -VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVG 238
V L + HTRELA+QI E++RFSKY+ ++ V +GG+ + K + K + P I++G
Sbjct: 158 FVRCLGLAHTRELAYQIKNEFDRFSKYLKGVRCEVVYGGIAMSKHIKMFKEESVPHIIIG 217
Query: 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
TPGRILAL+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT+
Sbjct: 218 TPGRILALIREKYLLTEKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATM 277
Query: 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVV 358
+KE+R VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV+
Sbjct: 278 AKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVI 337
Query: 359 IFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------- 404
IFVKSVTR I L LL+E NFP+++IH G+ Q+ER+++Y +FK F
Sbjct: 338 IFVKSVTRAITLDKLLTECNFPSIAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRGI 397
Query: 405 --------------------------------KGLAITFASDENDAKILNNVQDRFDVSI 432
KGLA+TF S + D LN VQ RF+V+I
Sbjct: 398 DIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAI 457
Query: 433 SELPDEIDLSTYI 445
SE+P++ID + YI
Sbjct: 458 SEMPNKIDCNEYI 470
>gi|440791920|gb|ELR13155.1| BAT1 protein [Acanthamoeba castellanii str. Neff]
Length = 464
Score = 368 bits (944), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 203/455 (44%), Positives = 268/455 (58%), Gaps = 82/455 (18%)
Query: 39 DNDDLLDYED-EENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD 97
D ++L DY D E E+ AG + K + ++H++ F+DFLLKPE+LRAI D
Sbjct: 6 DVNELADYSDGELEQEEQETLEAGAKSDEAKTSADTHSTVHTASFKDFLLKPELLRAITD 65
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
C ++ P S + +A+LG D++CQA
Sbjct: 66 C-----------------------GFEHP--SQVQFEVIP-------QAILGTDVICQAN 93
Query: 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
SGMGKTAVFVL+ LQQ+ D L++ HTRELA+QIS E+ RF+KYM NIK VFFG
Sbjct: 94 SGMGKTAVFVLSVLQQISAEDGT-SCLILAHTRELAYQISHEFGRFTKYMPNIKASVFFG 152
Query: 218 GLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRD 277
GLPI +D LK P IV+GTPGRILAL K L+L +K F+LDECD +LE ++MR D
Sbjct: 153 GLPIVQDRATLKKDPPHIVIGTPGRILALANEKALDLKKIKFFVLDECDSLLEPIDMRAD 212
Query: 278 VQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337
VQ+IFR +PH KQVMMFSATL+ EIR VCKKFMH+P+E+Y+ +KLTLHGL Q+YV+L+
Sbjct: 213 VQKIFRLTPHNKQVMMFSATLNDEIRAVCKKFMHNPLEIYISAGSKLTLHGLNQYYVQLE 272
Query: 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397
E EK +KL +LLD LEFNQ V+FV SV R L+ +L EQNFP+++I+RGM Q+ER++K+
Sbjct: 273 EREKTRKLVDLLDTLEFNQCVVFVSSVKRAAELNKILVEQNFPSIAIYRGMQQKERIEKF 332
Query: 398 QEFKDFH----------------------------------------------KGLAITF 411
+FK KGLAI+F
Sbjct: 333 AQFKSLRARIVVATNLLGRGIDVERINVVINYDMPGEADTYLHRVGRAGRFGTKGLAISF 392
Query: 412 ASDENDAKILNNVQDRFDVSISELPD--EIDLSTY 444
S + D ++LN VQ F V+I +L EI S+Y
Sbjct: 393 VSTKEDGEVLNKVQSLFVVNIPDLKPGVEIPKSSY 427
>gi|260810754|ref|XP_002600114.1| hypothetical protein BRAFLDRAFT_118235 [Branchiostoma floridae]
gi|229285400|gb|EEN56126.1| hypothetical protein BRAFLDRAFT_118235 [Branchiostoma floridae]
Length = 277
Score = 366 bits (939), Expect = 1e-98, Method: Compositional matrix adjust.
Identities = 183/275 (66%), Positives = 205/275 (74%), Gaps = 46/275 (16%)
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PIQKD LKT+ P IVV TPGR+LAL R+K LNL +KHFILDECDKMLEQL+MRRDV
Sbjct: 1 MPIQKDRNTLKTNCPHIVVATPGRLLALARDKSLNLKHVKHFILDECDKMLEQLDMRRDV 60
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEIFR +PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDE KLTLHGLQQHYVKLK+
Sbjct: 61 QEIFRMTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDETKLTLHGLQQHYVKLKD 120
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHR M QEERLK+Y
Sbjct: 121 NEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRAMGQEERLKRYN 180
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
+FK+F KGLAITF
Sbjct: 181 QFKNFERRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFV 240
Query: 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
SDENDAK+LN VQDRF+V++SELPDEID+S+YIE
Sbjct: 241 SDENDAKVLNEVQDRFEVNVSELPDEIDISSYIEA 275
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 188 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 235
>gi|66826121|ref|XP_646415.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
gi|60474379|gb|EAL72316.1| DEAD/DEAH box helicase [Dictyostelium discoideum AX4]
Length = 428
Score = 366 bits (939), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 193/438 (44%), Positives = 263/438 (60%), Gaps = 79/438 (18%)
Query: 56 VADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIE 115
V + D K +V++HSSGFR+FLLKPE+ R I DC E
Sbjct: 24 VQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELERVIGDCG--------------FE 69
Query: 116 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLE 175
+ V N +P+ A+LG D++CQAKSGMGKTAVFVL+TLQQ++
Sbjct: 70 HPSEVQNECIPQ------------------AILGTDVICQAKSGMGKTAVFVLSTLQQID 111
Query: 176 TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235
+ + LV+C+TRELA+QI E++RF+KY+ N+K V +GG+P+Q ++ +K P I
Sbjct: 112 NNPNGITTLVLCNTRELAYQICDEFDRFTKYLPNVKTAVIYGGIPVQTHKDLIKEKKPNI 171
Query: 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295
++GTPGRIL L L+L +K FILDECD MLE L+MR+DVQ+IF+ P KQVMMFS
Sbjct: 172 IIGTPGRILQLASEGALSLKEIKQFILDECDTMLESLDMRKDVQKIFKLIPANKQVMMFS 231
Query: 296 ATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFN 355
ATLS IRP+CKKFM++P+E+Y++D +KLTLHGLQQ+YV + E +KNKKL ELLD L+FN
Sbjct: 232 ATLSDTIRPICKKFMNNPLEIYINDGSKLTLHGLQQYYVPITEEQKNKKLIELLDSLDFN 291
Query: 356 QVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------- 404
Q VIFVKSV R AL+ +L + FP++ IHR + Q++R+++Y++FK+F
Sbjct: 292 QAVIFVKSVRRADALNKILQDIGFPSICIHRDLDQKDRIEQYRKFKNFESRIMVATNIFG 351
Query: 405 -----------------------------------KGLAITFASDENDAKILNNVQDRFD 429
KGLAI+F + D +L VQ +F
Sbjct: 352 RGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSKEDP-VLEQVQSKFV 410
Query: 430 VSISELPDEIDLSTYIEG 447
VSI EL D STY+ G
Sbjct: 411 VSIKELVATPDPSTYMSG 428
>gi|221053125|ref|XP_002257937.1| helicase [Plasmodium knowlesi strain H]
gi|193807769|emb|CAQ38474.1| helicase, putative [Plasmodium knowlesi strain H]
Length = 472
Score = 363 bits (933), Expect = 7e-98, Method: Compositional matrix adjust.
Identities = 207/494 (41%), Positives = 280/494 (56%), Gaps = 122/494 (24%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKE-----------VKGAYVSIHSSGFRDFLLKP 89
D+L+DYED+EN D G+ ++G+Y ++H+ GF+DF LKP
Sbjct: 10 DELVDYEDDENILD-AKDVKGNLDNSLLNNNNKGVNENGAMRGSYATVHTGGFKDFFLKP 68
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAI + F ++++ I A+ G
Sbjct: 69 ELLRAISESG--------FEHPSEVQQETI------------------------PAAITG 96
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTD--------------SN--------------- 180
DILCQAKSGMGKTAVFVL+ LQQLET D SN
Sbjct: 97 TDILCQAKSGMGKTAVFVLSILQQLETNDEKDIKDEKEMNSSTSNNIGGGLTNGDGASKN 156
Query: 181 --VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVV 237
V L + HTRELA+QI E++RFSKY+ ++ V +GG+ + K + K + P I++
Sbjct: 157 KFVRCLGLAHTRELAYQIKNEFDRFSKYLKGVRCEVVYGGISMSKHIKMFKEESIPHIII 216
Query: 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
GTPGRILAL+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT
Sbjct: 217 GTPGRILALIREKYLLTDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSAT 276
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
++KE+R VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV
Sbjct: 277 MAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQV 336
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------- 404
+IFVKSVTR I L LL+E NFP+++IH G+ Q+ER+++Y +FK F
Sbjct: 337 IIFVKSVTRAITLDKLLTECNFPSIAIHGGLDQQERIERYDKFKKFENRILVSTDLFGRG 396
Query: 405 ---------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431
KGLA+TF S + D LN VQ RF+V+
Sbjct: 397 IDIERINIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVA 456
Query: 432 ISELPDEIDLSTYI 445
ISE+P++ID + YI
Sbjct: 457 ISEMPNKIDCNEYI 470
>gi|156093980|ref|XP_001613028.1| eIF-4A-like DEAD family RNA helicase [Plasmodium vivax Sal-1]
gi|148801902|gb|EDL43301.1| eIF-4A-like DEAD family RNA helicase, putative [Plasmodium vivax]
Length = 473
Score = 363 bits (933), Expect = 8e-98, Method: Compositional matrix adjust.
Identities = 205/495 (41%), Positives = 276/495 (55%), Gaps = 123/495 (24%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKE-----------VKGAYVSIHSSGFRDFLLKP 89
D+L+DYED+EN D G ++G+Y ++H+ GF+DF LKP
Sbjct: 10 DELVDYEDDENILD-AKDVKGTLDNSLLNNNNKGVNENGAMRGSYATVHTGGFKDFFLKP 68
Query: 90 EILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149
E+LRAI + F ++++ I A+ G
Sbjct: 69 ELLRAISESG--------FEHPSEVQQETI------------------------PAAITG 96
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSN----------------------------- 180
DILCQAKSGMGKTAVFVL+ LQQLET D
Sbjct: 97 TDILCQAKSGMGKTAVFVLSILQQLETNDGKDIKEEKEMNNSAGSNNIGGDLTNGSGASK 156
Query: 181 ---VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIV 236
V L + HTRELA+QI E++RFSKY+ ++ V +GG+ + K + K P I+
Sbjct: 157 NKFVRCLGLAHTRELAYQIKNEFDRFSKYLKGVRCEVVYGGISMSKHIKMFKEEGIPHII 216
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
+GTPGRILAL+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSA
Sbjct: 217 IGTPGRILALIREKYLLTDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSA 276
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
T++KE+R VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQ
Sbjct: 277 TMAKEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQ 336
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
V+IFVKSVTR I L LL+E NFP+++IH G+ Q+ER+++Y +FK F
Sbjct: 337 VIIFVKSVTRAITLDKLLTECNFPSIAIHGGLDQQERIERYDKFKKFENRILVSTDLFGR 396
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLA+TF S + D LN VQ RF+V
Sbjct: 397 GIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEV 456
Query: 431 SISELPDEIDLSTYI 445
+ISE+P++ID + YI
Sbjct: 457 AISEMPNKIDCNEYI 471
>gi|46128571|ref|XP_388839.1| hypothetical protein FG08663.1 [Gibberella zeae PH-1]
Length = 547
Score = 363 bits (932), Expect = 9e-98, Method: Compositional matrix adjust.
Identities = 183/366 (50%), Positives = 243/366 (66%), Gaps = 65/366 (17%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LG DI+CQAKSG+GKTAVFVLATLQQ+E + V V+VMCHTRELA+QI EY RFS
Sbjct: 180 QALLGGDIICQAKSGLGKTAVFVLATLQQVEPVNGEVSVVVMCHTRELAYQIRDEYNRFS 239
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM +IK GVF+GG PI+ D E LK P I+VGTPGR+ ALVR+K L L ++ F+L
Sbjct: 240 KYMPDIKTGVFYGGTPIKTDVETLKNKETCPHIIVGTPGRLKALVRDKALRLGSVRIFVL 299
Query: 263 DECDKMLEQL----------------EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
DECDKML+Q +MR DVQ++FR++P KQVMMFSATLS+E++P+C
Sbjct: 300 DECDKMLDQPGEHLFLHSWQQNTNQSDMRTDVQDVFRATPQQKQVMMFSATLSEEVKPIC 359
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
+KFM +P E YVD++ KLTLHGLQQ+Y+KL+E EKN+KL ELLD L+FNQV+IFV+S R
Sbjct: 360 RKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEKEKNRKLNELLDDLQFNQVIIFVRSTVR 419
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------- 404
L LL E NFP++++H G++QEER+++Y+EFK+F
Sbjct: 420 ATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFKKRICVATDVFGRGIDIERINLA 479
Query: 405 ------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-I 439
KGLAI+F S + D ++L ++ RF+V++ E P E +
Sbjct: 480 INYDLSNDASSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKEIEKRFEVALPEFPKEGV 539
Query: 440 DLSTYI 445
D STY+
Sbjct: 540 DASTYM 545
Score = 77.4 bits (189), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYD+ D+ +YLHRV RAGRFGTK +
Sbjct: 459 RICVATDVFGRGIDIERINLAINYDLSNDASSYLHRVGRAGRFGTKGL 506
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 43/68 (63%), Gaps = 6/68 (8%)
Query: 37 MADNDDLLDYEDEE----NTEQIVADGAGDALAKQKEV--KGAYVSIHSSGFRDFLLKPE 90
M+ +DL+DY DEE T ++G LA V KG+YV IHS+GFRDFLLK E
Sbjct: 1 MSHEEDLIDYSDEEIGGNETAATASNGKKGELAAGNNVDKKGSYVGIHSTGFRDFLLKAE 60
Query: 91 ILRAIVDC 98
+LRAI DC
Sbjct: 61 LLRAIADC 68
>gi|299116076|emb|CBN74492.1| DEAD box helicase [Ectocarpus siliculosus]
Length = 865
Score = 362 bits (930), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 186/338 (55%), Positives = 236/338 (69%), Gaps = 33/338 (9%)
Query: 74 YVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYL 133
YV IH+SGFRDFLLKPE+LRA+VDC E + V + +P+
Sbjct: 53 YVGIHASGFRDFLLKPELLRAVVDC--------------GFEHPSEVQHECIPQ------ 92
Query: 134 HRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
A+LG+DI+CQAKSGMGKTAVFVLATL QL V LV+CHTRELA
Sbjct: 93 ------------AILGVDIVCQAKSGMGKTAVFVLATLHQLNPQPGEVSCLVLCHTRELA 140
Query: 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLN 253
+QI++EYERF K++ +KV V +GGLP+QK E LK P IVVG PGR++ LVR L
Sbjct: 141 WQIAREYERFCKHLPEVKVAVLYGGLPVQKQREMLKNDTPHIVVGCPGRVMQLVREGDLK 200
Query: 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD- 312
+ L++F+LDECDKML+Q +MR VQEIF +PHTKQVMMFSATLS E+RP+C+KF H+
Sbjct: 201 VDKLQYFVLDECDKMLDQKDMRAQVQEIFFKTPHTKQVMMFSATLSPEVRPICRKFCHEK 260
Query: 313 PMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALST 372
PME+YVDDE KLTLHGLQQ+Y+KL E EKN+KL +LLD+L+FNQVVIF V R + L
Sbjct: 261 PMEIYVDDETKLTLHGLQQYYIKLAETEKNRKLNDLLDLLDFNQVVIFCSKVDRAVELDR 320
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
LL+ NFP++ IH + QEER +Y++FK+F K + +
Sbjct: 321 LLNLCNFPSLVIHSRLKQEERTNRYKQFKNFEKRILVA 358
Score = 75.1 bits (183), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/53 (67%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP---EDSDTYLHRVARAGRFGTKAVLG 149
RILVAT+LFGRG+DIERVNIV NYD P + SD YLHRV RAGR A +G
Sbjct: 354 RILVATDLFGRGIDIERVNIVVNYDFPDGDDGSDQYLHRVGRAGRLVNSATMG 406
>gi|291001111|ref|XP_002683122.1| predicted protein [Naegleria gruberi]
gi|284096751|gb|EFC50378.1| predicted protein [Naegleria gruberi]
Length = 441
Score = 362 bits (928), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 202/470 (42%), Positives = 276/470 (58%), Gaps = 96/470 (20%)
Query: 36 KMADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAI 95
K D+D+L D++++ T+ A AGD A + Y S++SSGFRDF+LKPEIL+AI
Sbjct: 6 KKNDDDELADFDEDLQTKPTTA-SAGDKKAANSK---GYSSVNSSGFRDFVLKPEILKAI 61
Query: 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
VDC E + V + +P+ A++G D+LCQ
Sbjct: 62 VDCG--------------FEHPSEVQHECIPQ------------------AMIGSDVLCQ 89
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
AKSGMGKTAVFV++ LQQLET + +++CH RELA+QI +E+ RFSKY+ +++V F
Sbjct: 90 AKSGMGKTAVFVISVLQQLETIEPKTMCVILCHARELAYQICQEFNRFSKYLPDVRVKSF 149
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
GG+ I+ E LK+ P +VVGTPGR+L L ++ L L +K+FI+DECDK+LE EMR
Sbjct: 150 IGGINIKTHIEQLKSETPHVVVGTPGRVLQLAKDGHLKLGNVKYFIVDECDKVLESEEMR 209
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP--MEVYVDDEAKLTLHGLQQHY 333
D+QEIF+ +P TKQVMMFSATLS E+R KKFM+ MEV VD ++KLTLHGLQQ++
Sbjct: 210 SDMQEIFKKTPKTKQVMMFSATLSTEMRLTAKKFMNPSSLMEVKVDSDSKLTLHGLQQYF 269
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
+ LKE EKN KL LD LEFNQVVIFV++ R L +L + FP +++H M+Q+ER
Sbjct: 270 ILLKEEEKNGKLLSWLDALEFNQVVIFVRTKNRAEKLKDILEKNGFPCLTMHSDMSQDER 329
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
LK+YQ FK+F KGL
Sbjct: 330 LKQYQSFKNFEKRIMISTDLLGRGIDIQRVNIVFNYDMPDEPDSYLHRVGRAGRFGTKGL 389
Query: 408 AITFASDE------------NDAKILNNVQDRFDVSISELPDEIDLSTYI 445
AI+F S + ND ++L N+Q RF+V I E+P +ID+ TY+
Sbjct: 390 AISFISSDMPSKIGSYERTINDQEVLENIQKRFEVKIKEMPTQIDVGTYM 439
>gi|403346217|gb|EJY72497.1| putative ATP-dependent RNA helicase [Oxytricha trifallax]
Length = 422
Score = 359 bits (922), Expect = 1e-96, Method: Compositional matrix adjust.
Identities = 198/459 (43%), Positives = 271/459 (59%), Gaps = 89/459 (19%)
Query: 37 MADND-DLLDYEDE--ENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA N+ D+ DYE + +N E+ +GA + AY + S+GF+D LLKP++ R
Sbjct: 1 MAQNNMDIPDYEYDIDDNNEEEKQNGAAGRMT-------AYTGVLSAGFKDLLLKPQLQR 53
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AI +C F ++++ I +A++G+D+L
Sbjct: 54 AITECG--------FEHPSEVQQECI------------------------PQAMIGVDVL 81
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVL L QL V L++CHTRELA+QI E+ RF++Y+ +I+
Sbjct: 82 CQAKSGMGKTAVFVLTILHQLPDDPKPVSALILCHTRELAYQIKNEFARFTRYLPDIRTE 141
Query: 214 VFFGGLPIQKDEEYLK-THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
V +GG PIQ + LK P IVVGTPGRI LV K L+LS LK F+LDECDKMLE+
Sbjct: 142 VIYGGQPIQDQIQMLKGVKPPHIVVGTPGRIKHLVNKKDLDLSGLKIFVLDECDKMLEET 201
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MR DVQ+IF ++PH KQV MFSATLS +++ +C++FM +P E+++D++ KLTLHGL+Q+
Sbjct: 202 DMRSDVQQIFMATPHQKQVCMFSATLSTDVKKICRRFMKNPFEIFIDNQNKLTLHGLKQY 261
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KL+EN+K KKL +LLD L FNQV++FVKSV I L +L NFP++SIHR + Q+E
Sbjct: 262 YLKLEENQKTKKLTDLLDSLMFNQVIVFVKSVDFAIKLDEILRRDNFPSISIHRDLAQDE 321
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
R+K+Y EFK F KG
Sbjct: 322 RIKRYNEFKQFKYRIMVATDIFGRGIDIEKINVVFNYNMPNDSDSYLHRVGRAGRFGTKG 381
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
LAITF S D ++L +Q RF+V I ELP ID+STY+
Sbjct: 382 LAITFVSGAKDLEVLEEIQKRFEVKIEELPQTIDVSTYM 420
>gi|159491657|ref|XP_001703776.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
gi|158270457|gb|EDO96302.1| subunit of exon junction complex [Chlamydomonas reinhardtii]
Length = 435
Score = 359 bits (921), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 233/342 (68%), Gaps = 32/342 (9%)
Query: 61 GDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIV 120
+A+ K + K YV IH++GF++ +LKPE+L+AI DC
Sbjct: 21 AEAVGKAGQEKKGYVGIHATGFKELMLKPELLQAIADCG--------------------- 59
Query: 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN 180
F + + H A+LG D+LCQAKSGMGKTAVFVL+ LQQL+ +
Sbjct: 60 FEHPSEVQHECIPH-----------AILGNDVLCQAKSGMGKTAVFVLSILQQLDPKANE 108
Query: 181 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP 240
+ +++CHTRELAFQI E+ RFS M + +G F+GG+P+ +++E LK P IVVGTP
Sbjct: 109 CHAIILCHTRELAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKAVPNIVVGTP 168
Query: 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300
GRI L + L L ++ F+LDECDKMLE+L+MR D QEIF+ +PH KQVMMFSATL++
Sbjct: 169 GRIKQLAKEGALPLKHVRFFVLDECDKMLEKLDMRADCQEIFKLTPHEKQVMMFSATLNQ 228
Query: 301 EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360
++R VCKKFM +P EVYVDDE+KLTLHGL QHYV L E EKN+KL +LLD L+FNQVVIF
Sbjct: 229 DMRGVCKKFMTNPQEVYVDDESKLTLHGLVQHYVMLHEEEKNRKLNDLLDALDFNQVVIF 288
Query: 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402
VKSV R L+TLL+E NFP+V I+ GM QEER+K Y+ FK+
Sbjct: 289 VKSVARAKMLNTLLNECNFPSVCIYGGMDQEERIKVYKHFKE 330
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 43/61 (70%), Gaps = 13/61 (21%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPED-------------SDTYLHRVARAGRFGTKA 146
RILVAT+L GRG+DIERVNIV NYDMPE +DTYLHRV RAGRFGTK
Sbjct: 334 RILVATDLVGRGIDIERVNIVINYDMPESDDKSKGESKHGNGADTYLHRVGRAGRFGTKG 393
Query: 147 V 147
+
Sbjct: 394 L 394
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + D+ +LN VQDRFDV I LP++ID STY+
Sbjct: 392 KGLAITFVSSQEDSAVLNAVQDRFDVDIKPLPEKIDASTYM 432
>gi|302836427|ref|XP_002949774.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
nagariensis]
gi|300265133|gb|EFJ49326.1| hypothetical protein VOLCADRAFT_80795 [Volvox carteri f.
nagariensis]
Length = 435
Score = 358 bits (920), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 179/342 (52%), Positives = 231/342 (67%), Gaps = 32/342 (9%)
Query: 61 GDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIV 120
+A+ K + K YV IH++GF++ +LKPE+L+AI DC
Sbjct: 21 AEAVGKAGQEKKGYVGIHATGFKELMLKPELLQAIADCG--------------------- 59
Query: 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN 180
F + + H A+LG D+LCQAKSGMGKTAVFVL+ LQQL+ +
Sbjct: 60 FEHPSEVQHECIPH-----------AILGNDVLCQAKSGMGKTAVFVLSILQQLDPKPNE 108
Query: 181 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP 240
+ +++CHTRELAFQI E+ RFS M + +G F+GG+P+ +++E LK P IVVGTP
Sbjct: 109 CHAIILCHTRELAFQICHEFTRFSARMKGVTIGNFYGGIPVTQNKETLKKSVPNIVVGTP 168
Query: 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300
GRI L + L L ++ F+LDECDKMLE+L+MR D QEIF+ +PH KQVMMFSATL+
Sbjct: 169 GRIKQLAKEGALPLKHVRFFVLDECDKMLEKLDMRADCQEIFKMTPHEKQVMMFSATLNP 228
Query: 301 EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360
E+R VCKKFM +P EVYVDDE+KLTLHGL QHYV L E EKN+KL +LLD L+FNQVVIF
Sbjct: 229 EMRAVCKKFMTNPQEVYVDDESKLTLHGLVQHYVMLHEEEKNRKLNDLLDALDFNQVVIF 288
Query: 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402
VKSV R L+ LL+E NFP+V I+ GM QEER+K Y+ FK+
Sbjct: 289 VKSVARAKMLNQLLNECNFPSVCIYGGMEQEERIKVYKNFKE 330
Score = 80.1 bits (196), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 43/61 (70%), Gaps = 13/61 (21%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPED-------------SDTYLHRVARAGRFGTKA 146
RILVAT+L GRG+DIERVNIV NYDMPE +DTYLHRV RAGRFGTK
Sbjct: 334 RILVATDLVGRGIDIERVNIVINYDMPESDDKAKGESKHGNGADTYLHRVGRAGRFGTKG 393
Query: 147 V 147
+
Sbjct: 394 L 394
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/41 (63%), Positives = 32/41 (78%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S + D+ +LN VQDRFDV I LP++ID STY+
Sbjct: 392 KGLAITFVSSQEDSAVLNAVQDRFDVDIKPLPEKIDASTYM 432
>gi|312382514|gb|EFR27948.1| hypothetical protein AND_04792 [Anopheles darlingi]
Length = 481
Score = 354 bits (909), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 190/276 (68%), Positives = 211/276 (76%), Gaps = 35/276 (12%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADN+DLLDYE+E+ TEQ+VA+ +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNEDLLDYEEEDQTEQVVAETTEQP---KKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFVLATLQQLE T+S YVLVMCHTRELAFQISKEYERF KYM +IKV VFF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPTESVPYVLVMCHTRELAFQISKEYERFCKYMPSIKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+PIQKDEE LK+ P I+VGTPGR+LAL+RNKKLNL LKHFILDECDKMLEQL+MRR
Sbjct: 146 GGMPIQKDEEVLKSTTPHIIVGTPGRVLALIRNKKLNLKNLKHFILDECDKMLEQLDMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
DVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM D
Sbjct: 206 DVQEIFRNTPHGKQVMMFSATLSKEIRPVCKKFMQD 241
Score = 202 bits (514), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 118/183 (64%), Positives = 128/183 (69%), Gaps = 46/183 (25%)
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
DPMEVYVDDE KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+
Sbjct: 299 DPMEVYVDDETKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALA 358
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------- 404
LL+EQNFPA+ IHRGM QEERL +YQ+FKDF
Sbjct: 359 QLLTEQNFPAIGIHRGMVQEERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDM 418
Query: 405 -------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF SDE DAKILN+VQDRFDV+I+ELPDEIDLS+YI
Sbjct: 419 PEDSDTYLHRVARAGRFGTKGLAITFISDEADAKILNDVQDRFDVNINELPDEIDLSSYI 478
Query: 446 EGR 448
EGR
Sbjct: 479 EGR 481
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 393 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 440
>gi|62088014|dbj|BAD92454.1| HLA-B associated transcript 1 variant [Homo sapiens]
Length = 310
Score = 351 bits (901), Expect = 4e-94, Method: Compositional matrix adjust.
Identities = 191/299 (63%), Positives = 213/299 (71%), Gaps = 38/299 (12%)
Query: 17 NVFLFFRAFIRFSSSFPHSKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGA 73
+ L R R + S P MA+ND +LLDYED+E DGA +A AK K+VKG+
Sbjct: 2 QISLLRRCCCRHTRS-PCLVMAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGS 58
Query: 74 YVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYL 133
YVSIHSSGFRDFLLKPE+LRAIVDC E + V + +P+
Sbjct: 59 YVSIHSSGFRDFLLKPELLRAIVDCG--------------FEHPSEVQHECIPQ------ 98
Query: 134 HRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELA
Sbjct: 99 ------------AILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELA 146
Query: 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLN 253
FQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LN
Sbjct: 147 FQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLN 206
Query: 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
L +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 LKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 265
>gi|354492854|ref|XP_003508559.1| PREDICTED: spliceosome RNA helicase Ddx39b-like [Cricetulus
griseus]
Length = 376
Score = 350 bits (898), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 204/279 (73%), Gaps = 37/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDE--VETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDC--------------GFEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>gi|403307907|ref|XP_003944424.1| PREDICTED: LOW QUALITY PROTEIN: spliceosome RNA helicase DDX39B
[Saimiri boliviensis boliviensis]
Length = 577
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/279 (66%), Positives = 206/279 (73%), Gaps = 37/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
Score = 136 bits (342), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 73/137 (53%), Positives = 84/137 (61%), Gaps = 46/137 (33%)
Query: 356 QVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------- 404
+VVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 438 EVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFG 497
Query: 405 -----------------------------------KGLAITFASDENDAKILNNVQDRFD 429
KGLAITF SDENDAKILN+VQDRF+
Sbjct: 498 RGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFE 557
Query: 430 VSISELPDEIDLSTYIE 446
V+ISELPDEID+S+YIE
Sbjct: 558 VNISELPDEIDISSYIE 574
Score = 101 bits (252), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 488 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 535
>gi|442626187|ref|NP_001260100.1| helicase at 25E, isoform D [Drosophila melanogaster]
gi|440213395|gb|AGB92636.1| helicase at 25E, isoform D [Drosophila melanogaster]
Length = 305
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 191/277 (68%), Positives = 209/277 (75%), Gaps = 36/277 (12%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE TE + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQTETTAVENQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC F +++ I +AVLGMDILCQA
Sbjct: 58 DCG--------FEHPSEVQHECI------------------------PQAVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+ IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LLKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
RDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM D
Sbjct: 206 RDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQD 242
>gi|74142931|dbj|BAE42496.1| unnamed protein product [Mus musculus]
Length = 324
Score = 350 bits (897), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 186/279 (66%), Positives = 206/279 (73%), Gaps = 37/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>gi|344239195|gb|EGV95298.1| Spliceosome RNA helicase BAT1 [Cricetulus griseus]
Length = 288
Score = 349 bits (895), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 183/279 (65%), Positives = 204/279 (73%), Gaps = 37/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEV--ETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDC--------------GFEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>gi|119623817|gb|EAX03412.1| hCG2005638, isoform CRA_d [Homo sapiens]
Length = 290
Score = 348 bits (894), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 186/279 (66%), Positives = 206/279 (73%), Gaps = 37/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 245
>gi|410053369|ref|XP_001171822.3| PREDICTED: ATP-dependent RNA helicase DDX39A isoform 6 [Pan
troglodytes]
Length = 600
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 216/496 (43%), Positives = 274/496 (55%), Gaps = 109/496 (21%)
Query: 35 SKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
S MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+
Sbjct: 127 SIMAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPEL 183
Query: 92 LR--------------------AIVDCWRILVATNLFGRG--------MDIERVNIVFNY 123
LR AI+ + A + G+ IE VN
Sbjct: 184 LRAIVDCGFEHPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVGG 243
Query: 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV 183
+P +R G G + +L +A++ A L + + +
Sbjct: 244 LLPSWPHPACGGGSRVGWMGWLTPVS-PVLWEAEA----------AGLLEPRKSRLQCAM 292
Query: 184 LVMCHTR-------ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
+ H+ ISKEYERFSKYM ++KV VFFGGL I+KDEE LK + P +V
Sbjct: 293 ITPLHSSLGDRXXXXXXXXISKEYERFSKYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVV 352
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILALVRN+ +L +KHF+LDECDKMLEQL + ++P Q
Sbjct: 353 VGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLGESSAL-----AAPAESQCPEVIP 407
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
+ P PMEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQ
Sbjct: 408 ARPSHLSPT------QPMEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQ 461
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404
V+IFVKSV RC+AL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 462 VIIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGR 521
Query: 405 ----------------------------------KGLAITFASDENDAKILNNVQDRFDV 430
KGLAITF SDENDAKILN+VQDRF+V
Sbjct: 522 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEV 581
Query: 431 SISELPDEIDLSTYIE 446
+++ELP+EID+STYIE
Sbjct: 582 NVAELPEEIDISTYIE 597
>gi|307105337|gb|EFN53587.1| hypothetical protein CHLNCDRAFT_136793 [Chlorella variabilis]
Length = 519
Score = 345 bits (886), Expect = 2e-92, Method: Compositional matrix adjust.
Identities = 188/398 (47%), Positives = 244/398 (61%), Gaps = 61/398 (15%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGF+DFLLKPE+LRAI DC E + V + +P+
Sbjct: 37 VKKGYVGIHSSGFKDFLLKPELLRAIQDC--------------GFEHPSEVQHECIPQ-- 80
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFV++TLQQLE D V V+V+CHT
Sbjct: 81 ----------------AILGMDVICQAKSGMGKTAVFVISTLQQLEPVDGQVSVVVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALV 247
RELAFQI EYERF+ YM N++VG FFGGLPI++ E LK + P ++VGTPGR+ L
Sbjct: 125 RELAFQICHEYERFTTYMKNVRVGNFFGGLPIKQQREQLKDKDKCPHVIVGTPGRVKGLA 184
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
K L++S ++HF++DECDK LE ++MR DVQ IF+ +PH KQVMMFSATLS EIRPVCK
Sbjct: 185 DEKNLDMSHVRHFVVDECDKCLENIDMRADVQAIFKKTPHDKQVMMFSATLSSEIRPVCK 244
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV-VIFVKSVTR 366
KFM DPME+YVDDEAKLTLHGL QHYV L E++KN+KL +LLD L+FNQ F+ R
Sbjct: 245 KFMRDPMEIYVDDEAKLTLHGLVQHYVMLNEDQKNRKLNDLLDALDFNQARASFLPCCRR 304
Query: 367 CI--ALSTLLSEQNFP-----------AVSIHRGMTQE--ERLK----KYQEFKDFHKGL 407
+ A ++ + P A + H + + E LK Y + ++ G
Sbjct: 305 TLAGAETSWCQQHGLPNATALRTFRSCAAACHSALVESLGEELKYEKDNYAQPEELAAGP 364
Query: 408 AITFASDENDAKILNNVQDR-------FDVSISELPDE 438
F+ E D L ++ DV +++ P+E
Sbjct: 365 PAGFSLTETDGDTLMSLSKEHKGERVTIDVMVNDQPEE 402
>gi|355671587|gb|AER94941.1| HLA-B associated transcript 1 [Mustela putorius furo]
Length = 244
Score = 344 bits (883), Expect = 5e-92, Method: Compositional matrix adjust.
Identities = 184/278 (66%), Positives = 205/278 (73%), Gaps = 37/278 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYE++E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEEDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQ 244
>gi|397526359|ref|XP_003833095.1| PREDICTED: LOW QUALITY PROTEIN: ATP-dependent RNA helicase
DDX39A-like [Pan paniscus]
Length = 482
Score = 343 bits (881), Expect = 9e-92, Method: Compositional matrix adjust.
Identities = 211/460 (45%), Positives = 267/460 (58%), Gaps = 109/460 (23%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D +LLDYE+E A + ++K+VKG+YVS+HSSGF DFLLK E+
Sbjct: 1 MAEQDVENELLDYEEEPQ-----ASPGSTLVPRKKDVKGSYVSVHSSGFWDFLLKLELXE 55
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
+C IL AT LGMDI
Sbjct: 56 VQHEC--ILQAT------------------------------------------LGMDIQ 71
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY-ERFSKYMSNIKV 212
CQAKSG GKTAVFV AT+QQ+ + V VL+ CHT ELAFQISKE E FSK M ++KV
Sbjct: 72 CQAKSGKGKTAVFVPATVQQIRPVNXQVTVLIXCHTGELAFQISKECNEHFSKXMPSVKV 131
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
VFFGGL I+K+EE L + P+++VGTPGRI+ALV+N+ LNL +KHF+LDE ML L
Sbjct: 132 SVFFGGLFIKKNEELL-MNCPRVMVGTPGRIVALVQNRSLNLKNVKHFVLDE---MLRWL 187
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+M RD+ E KQ +MFSATLSKEI PVC++ M PMEV+VDDE K TLH QQ+
Sbjct: 188 DMWRDMWEASHLMFQQKQXIMFSATLSKEIWPVCRESMQGPMEVFVDDETKRTLHTPQQY 247
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
Y+KLK+ EKN KLF+LLD+LEF QV IF+K V C++ + LL EQNF A M QEE
Sbjct: 248 YLKLKDTEKNCKLFDLLDMLEFKQVAIFIKPVQPCMSPAQLLMEQNFLA------MAQEE 301
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
L +Y + KDF K
Sbjct: 302 CLSRYXQSKDFQQWILVDINLFAVSCNIHRDMEAFNYGMPEDSDTYLHPVACAGCFGTKD 361
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
LAITF S+ENDAK+LN++QDRF+V+++EL +E ++STY E
Sbjct: 362 LAITFVSEENDAKVLNDIQDRFEVNVTELLEESNISTYGE 401
>gi|326426496|gb|EGD72066.1| DEAD box polypeptide 39 isoform 1 [Salpingoeca sp. ATCC 50818]
Length = 438
Score = 341 bits (874), Expect = 6e-91, Method: Compositional matrix adjust.
Identities = 199/469 (42%), Positives = 268/469 (57%), Gaps = 96/469 (20%)
Query: 37 MAD--NDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MAD D++L DE+ + VAD + K K+VKG+Y +HS+GF+DF LKPE+LRA
Sbjct: 1 MADVVEDEVLTGYDEDVEQTTVADLEAE---KPKDVKGSYSGLHSAGFKDFSLKPELLRA 57
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F ++++ I +A++G D++C
Sbjct: 58 IRDCG--------FEHPSEVQQECI------------------------PQALIGTDVIC 85
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS-NIKVG 213
QAKSGMGKTAVFV++ L QL+ D V LV+CH RELA QI KE+ERF+ +MS ++
Sbjct: 86 QAKSGMGKTAVFVISVLDQLKPVDGEVSCLVLCHARELADQIHKEFERFAAHMSPTVRSE 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML---- 269
VF+GG+ + + E L+ + P +VVGTPGR+ L+ L L +K F++DECDK+L
Sbjct: 146 VFYGGIKLSSNIEKLR-NPPHVVVGTPGRLYHLMEEGHLKLGNVKFFVIDECDKVLKPDA 204
Query: 270 -------EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
+ L+MRR VQ + P KQVMMF+ATL KE R +C+KFM++PMEV VDD+A
Sbjct: 205 RSIEKGSDGLDMRRKVQALHMKCPRNKQVMMFTATLDKETRGLCRKFMNNPMEVCVDDDA 264
Query: 323 KLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KL L L+Q+YVKL E+EK +KL +LLD LEFNQVVIF+ S R L+ LL ++NFP
Sbjct: 265 KLKLRSLKQYYVKLTEDEKTRKLLDLLDALEFNQVVIFLSSQARVRVLAKLLEQENFPVK 324
Query: 383 SIHRGMTQEERLKKYQEFKDFH-------------------------------------- 404
+IH GM QE RL+ Y+EFK F
Sbjct: 325 AIHGGMRQEHRLENYREFKSFKARILVATDVFGRGMDIERVNIVINYDMPEDTDTYLHRV 384
Query: 405 --------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S +A+ILN Q RFDV I+E+P +D S Y+
Sbjct: 385 ARAGRFGTKGLAITFVSTPEEAEILNKTQGRFDVDIAEMPATLDKSEYM 433
>gi|430811988|emb|CCJ30584.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 770
Score = 340 bits (873), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 189/389 (48%), Positives = 231/389 (59%), Gaps = 85/389 (21%)
Query: 19 FLFFRAFIRFSSSFPHSK-------MADNDDLLDYEDEE------NTEQIVADGAGDALA 65
+ FF F F S H MA +DDL+DYE+EE ++ G
Sbjct: 452 YFFFEVFTYFLS-LKHGNFEYLLLIMASHDDLIDYEEEEELPASAGVSTVMGTGGTVNGE 510
Query: 66 KQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDM 125
K+ E KG+YV IHS+GFRDFLLKPE+LRAI+DC +++V I
Sbjct: 511 KKNEKKGSYVGIHSTGFRDFLLKPELLRAIIDC---------------VQQVCI------ 549
Query: 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV 185
+++LGMDI+CQAKSGMGKTAVFVLATLQQ+E D V VLV
Sbjct: 550 ------------------PQSILGMDIICQAKSGMGKTAVFVLATLQQIEPVDGEVSVLV 591
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRI 243
CHTRELAFQI EY RFSKYM +++ VF+GG P++ D E LK P I+V TPGR+
Sbjct: 592 QCHTRELAFQIKNEYARFSKYMPDVRTAVFYGGTPVRNDIELLKNKEKCPHIIVATPGRL 651
Query: 244 LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
ALVR+K L +KHFILDE MRRD+QE+FR++PH KQ
Sbjct: 652 NALVRDKALRAGCVKHFILDEY--------MRRDIQEVFRATPHQKQ------------- 690
Query: 304 PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKS 363
P+E+YVDDE KLTLHGLQQHYVKL+E+ KN+KL +LLD LEFNQVVIFVKS
Sbjct: 691 ---------PLEIYVDDETKLTLHGLQQHYVKLEESAKNRKLNDLLDALEFNQVVIFVKS 741
Query: 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
V R L LL E NFP++ IH + QEE
Sbjct: 742 VQRASELDRLLRECNFPSICIHGALPQEE 770
>gi|52695645|pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
gi|52695646|pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 339 bits (870), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 171/250 (68%), Positives = 189/250 (75%), Gaps = 32/250 (12%)
Query: 69 EVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPED 128
+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P +
Sbjct: 3 DVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHPSE 39
Query: 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188
H +A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCH
Sbjct: 40 VQ---HECI------PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90
Query: 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVR 248
TRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL R
Sbjct: 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 150
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
NK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+K
Sbjct: 151 NKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210
Query: 309 FMHDPMEVYV 318
FM DPME++V
Sbjct: 211 FMQDPMEIFV 220
>gi|37779016|gb|AAP20168.1| DEAD/H box polypeptide [Pagrus major]
Length = 229
Score = 338 bits (866), Expect = 5e-90, Method: Compositional matrix adjust.
Identities = 157/209 (75%), Positives = 182/209 (87%)
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
RFSKYM +KV VFFGG+ I+KDEE L+ + P IVVGTPGR LAL+ NK LNL +KHF+
Sbjct: 5 RFSKYMPTVKVSVFFGGMAIKKDEEVLRKNCPHIVVGTPGRTLALIANKSLNLKNVKHFV 64
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPMEV+VDDE
Sbjct: 65 LDECDKMLEQLDMRRDVQEIFRLTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEVFVDDE 124
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+ALS LL EQNFPA
Sbjct: 125 TKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVHRCVALSQLLVEQNFPA 184
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
++IHRGM QEERL +YQ+FKDF + + +
Sbjct: 185 IAIHRGMAQEERLSRYQQFKDFQRRILVA 213
Score = 46.6 bits (109), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/21 (100%), Positives = 21/21 (100%)
Query: 100 RILVATNLFGRGMDIERVNIV 120
RILVATNLFGRGMDIERVNIV
Sbjct: 209 RILVATNLFGRGMDIERVNIV 229
>gi|391873487|gb|EIT82517.1| ATP-dependent RNA helicase [Aspergillus oryzae 3.042]
Length = 310
Score = 337 bits (863), Expect = 9e-90, Method: Compositional matrix adjust.
Identities = 169/309 (54%), Positives = 216/309 (69%), Gaps = 49/309 (15%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRI 243
MCHTRELA+QI EY RFSKY+ ++K VF+GG PIQKD E L K P IVVGTPGR+
Sbjct: 1 MCHTRELAYQIKNEYARFSKYLPDVKTAVFYGGTPIQKDVEVLSNKESYPNIVVGTPGRL 60
Query: 244 LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
ALVR+KKL+L +K F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+EIR
Sbjct: 61 NALVRDKKLSLRNVKAFVLDECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEIR 120
Query: 304 PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKS 363
PVCKKFM +P+EVYVDD+ KLTLHGLQQ+Y+KL E EKN+KL ELLD LEFNQV+IFVKS
Sbjct: 121 PVCKKFMRNPLEVYVDDDTKLTLHGLQQYYIKLSEAEKNRKLNELLDSLEFNQVIIFVKS 180
Query: 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------- 404
R L LL E NFP++++H G++QEER+K+Y+EFK+F+
Sbjct: 181 TLRANELDKLLRECNFPSIAVHSGVSQEERIKRYKEFKEFNKRICVATDVFGRGIDIERI 240
Query: 405 ---------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPD 437
KGL+I+F S+E D K+L +++ RF+V++ E P+
Sbjct: 241 NLAINYDLPADADSYLHRVGRAGRFGTKGLSISFVSNEEDEKVLKDIEKRFEVALPEYPE 300
Query: 438 -EIDLSTYI 445
+D STY+
Sbjct: 301 GGVDSSTYM 309
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYD+P D+D+YLHRV RAGRFGTK +
Sbjct: 223 RICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGL 270
>gi|168985562|emb|CAQ10640.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 238
Score = 335 bits (859), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 181/272 (66%), Positives = 200/272 (73%), Gaps = 37/272 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
MRRDVQEIFR +PH KQVMMFSATLSKEIRPV
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 238
>gi|217330694|gb|ACK38186.1| unknown [Medicago truncatula]
gi|218506067|gb|ACK77675.1| unknown [Medicago truncatula]
Length = 278
Score = 333 bits (854), Expect = 1e-88, Method: Compositional matrix adjust.
Identities = 168/276 (60%), Positives = 200/276 (72%), Gaps = 32/276 (11%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD E + V + +P+
Sbjct: 35 VKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEHPSEVQHECIPQ-- 78
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHT
Sbjct: 79 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIDPVPGQVAALVLCHT 122
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E ERFS Y+ +IKV VF+GG+ I+ ++ LK P IVVGTPGRILAL R+
Sbjct: 123 RELAYQICHEVERFSTYLPDIKVAVFYGGVNIKVHKDLLKNECPHIVVGTPGRILALTRD 182
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
+ L L ++HFILDECDKMLE L+MR+DVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 183 RDLGLKNVRHFILDECDKMLESLDMRKDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKF 242
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKL 345
M DPME+YVDDEAKLTLHGL QHY+KL+E EKN+KL
Sbjct: 243 MQDPMEIYVDDEAKLTLHGLVQHYIKLQEPEKNRKL 278
>gi|168985561|emb|CAQ10639.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 236
Score = 330 bits (847), Expect = 7e-88, Method: Compositional matrix adjust.
Identities = 179/270 (66%), Positives = 198/270 (73%), Gaps = 37/270 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
MRRDVQEIFR +PH KQVMMFSATLSKEIR
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATLSKEIR 236
>gi|237651933|gb|ACR08655.1| helicase at 25E, partial [Drosophila silvestris]
Length = 224
Score = 330 bits (846), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 175/259 (67%), Positives = 189/259 (72%), Gaps = 36/259 (13%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE E + A +K+VKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQNETTAVESQE---APKKDVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ AVLGMDILCQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AVLGMDILCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFVLATLQQLE D+N +VLVMCHTRELAFQISKEYERFSKYM +KV VF
Sbjct: 86 KSGMGKTAVFVLATLQQLEPADNNTCHVLVMCHTRELAFQISKEYERFSKYMPTVKVAVF 145
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGGL IQKDEE LK P IVVGTPGRILAL+RNKKLNL LKHF+LDECDKMLEQL+MR
Sbjct: 146 FGGLAIQKDEETLKNGTPHIVVGTPGRILALIRNKKLNLKHLKHFVLDECDKMLEQLDMR 205
Query: 276 RDVQEIFRSSPHTKQVMMF 294
RDVQEIFRS+PH KQVMMF
Sbjct: 206 RDVQEIFRSTPHGKQVMMF 224
>gi|432097471|gb|ELK27668.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 336
Score = 327 bits (839), Expect = 6e-87, Method: Compositional matrix adjust.
Identities = 165/280 (58%), Positives = 199/280 (71%), Gaps = 46/280 (16%)
Query: 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
G F L +KDEE LK P +VVGTPGR+LALVRN+ LNL +KHF+LDECD+MLEQL
Sbjct: 54 GQFPLRLTHKKDEEVLKKSCPHVVVGTPGRLLALVRNRSLNLRNVKHFVLDECDQMLEQL 113
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MR DVQEIFR +P KQ MMFSATLSKEIRPVC+KFM +P+EV VDD+ KLTLHGLQQ+
Sbjct: 114 DMRWDVQEIFRLTPRGKQCMMFSATLSKEIRPVCRKFMQEPLEVAVDDDTKLTLHGLQQY 173
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
YVKL+E EKN+KL +LLDVLEFNQVVIFV+SV RC+AL+ LL EQ+FPA++IHR M QEE
Sbjct: 174 YVKLREREKNRKLVDLLDVLEFNQVVIFVRSVQRCMALAQLLGEQSFPAIAIHRAMAQEE 233
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
RL +YQ+FKDF KG
Sbjct: 234 RLSRYQQFKDFQQRILVATNLFGRGMDIERVNIVFNYDMAEDSDTYLHRVARAGRFGTKG 293
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
LAITF S +NDAKILN VQ RF+V+++ELP+E+D+STY+E
Sbjct: 294 LAITFVSHDNDAKILNEVQGRFEVNVAELPEEMDISTYME 333
Score = 99.4 bits (246), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDM EDSDTYLHRVARAGRFGTK +
Sbjct: 247 RILVATNLFGRGMDIERVNIVFNYDMAEDSDTYLHRVARAGRFGTKGL 294
>gi|68161088|gb|AAY86975.1| DEAD box protein [Ictalurus punctatus]
Length = 251
Score = 323 bits (829), Expect = 8e-86, Method: Compositional matrix adjust.
Identities = 160/251 (63%), Positives = 187/251 (74%), Gaps = 46/251 (18%)
Query: 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
TPGRILALVRNK L+L +KHF+LDECDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATL
Sbjct: 1 TPGRILALVRNKTLSLKNVKHFVLDECDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATL 60
Query: 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVV 358
SKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y KLK++EKN+KLF+LLDVLEFNQVV
Sbjct: 61 SKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYYCKLKDSEKNRKLFDLLDVLEFNQVV 120
Query: 359 IFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------- 404
IFVK V RC+ALS LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 121 IFVKPVARCVALSQLLVEQNFPAIAIHRGMVQEERLSRYQQFKDFQRRILVATNLFGRGM 180
Query: 405 --------------------------------KGLAITFASDENDAKILNNVQDRFDVSI 432
KGLA+TF SDE DAKILN+VQDRF+V++
Sbjct: 181 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDETDAKILNDVQDRFEVNV 240
Query: 433 SELPDEIDLST 443
+ELP+EID+S+
Sbjct: 241 AELPEEIDISS 251
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 168 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 215
>gi|119604821|gb|EAW84415.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Homo
sapiens]
gi|119604822|gb|EAW84416.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_b [Homo
sapiens]
Length = 316
Score = 322 bits (826), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 200/279 (71%), Gaps = 38/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 58 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM D
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 244
>gi|171702402|dbj|BAG16272.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39 transcript variant [Homo
sapiens]
Length = 267
Score = 322 bits (825), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 170/279 (60%), Positives = 200/279 (71%), Gaps = 38/279 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ D DLLDY++EE + +K++KG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAEQDVENDLLDYDEEEEPQAPQESTPA---PPKKDIKGSYVSIHSSGFRDFLLKPELLR 57
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 58 AIVDC--------------GFEHPSEVQHECIPQ------------------AILGMDVL 85
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++KV
Sbjct: 86 CQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFSKYMPSVKVS 145
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDECDKMLEQL+
Sbjct: 146 VFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDECDKMLEQLD 205
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM D
Sbjct: 206 MRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 244
>gi|168985560|emb|CAQ10638.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 231
Score = 322 bits (824), Expect = 3e-85, Method: Compositional matrix adjust.
Identities = 174/265 (65%), Positives = 193/265 (72%), Gaps = 37/265 (13%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLD 206
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATL 298
MRRDVQEIFR +PH KQVMMFSATL
Sbjct: 207 MRRDVQEIFRMTPHEKQVMMFSATL 231
>gi|255548938|ref|XP_002515525.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
gi|223545469|gb|EEF46974.1| dead box ATP-dependent RNA helicase, putative [Ricinus communis]
Length = 275
Score = 317 bits (811), Expect = 9e-84, Method: Compositional matrix adjust.
Identities = 163/275 (59%), Positives = 195/275 (70%), Gaps = 35/275 (12%)
Query: 60 AGDALAKQ---KEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIER 116
A D++A + + K YV IHSSGFRDFLLKPE+LRAIVD E
Sbjct: 24 APDSVAAKVNGESAKKGYVGIHSSGFRDFLLKPELLRAIVDSG--------------FEH 69
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
+ V + +P+ A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E
Sbjct: 70 PSEVQHECIPQ------------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEP 111
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
T V LV+CHTRELA+QI E+ERFS Y+ + KV VF+GG+ I+ ++ LK P IV
Sbjct: 112 TSGQVIALVLCHTRELAYQICHEFERFSTYLPDTKVAVFYGGVHIKIHKDLLKNECPHIV 171
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGRILAL R+K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSA
Sbjct: 172 VGTPGRILALARDKDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSA 231
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
TLSKEIRPVCKKFM DPME+YVDDEAKLTLHGL Q
Sbjct: 232 TLSKEIRPVCKKFMQDPMEIYVDDEAKLTLHGLVQ 266
>gi|168985558|emb|CAQ10636.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 245
Score = 313 bits (803), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 154/211 (72%), Positives = 173/211 (81%), Gaps = 6/211 (2%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNI------KVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
M + LAF S + S +S + KV VFFGGL I+KDEE LK + P IVVGT
Sbjct: 35 MSPSTALAFVTSCSSQSCSGPLSTVALSIRQKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 94
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLS
Sbjct: 95 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 154
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVI
Sbjct: 155 KEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVI 214
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
FVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 215 FVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
>gi|432094505|gb|ELK26064.1| ATP-dependent RNA helicase DDX39A [Myotis davidii]
Length = 284
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 164/286 (57%), Positives = 194/286 (67%), Gaps = 51/286 (17%)
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M ++ V VFFGGL +KDEE LK TPGRILALV N LNL +KHF+LDE +
Sbjct: 1 MPSVTVSVFFGGLSTKKDEEVLKKS-----CRTPGRILALVLNSSLNLRNVKHFVLDEHE 55
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+MLEQL+MRRDVQEIFR P +Q MMFSATLSK+IRPVC KFM DP+EV VD + KLTL
Sbjct: 56 QMLEQLDMRRDVQEIFRLRPCDRQCMMFSATLSKQIRPVCMKFMQDPVEVLVDKDTKLTL 115
Query: 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
HGLQQ+YVKLK++EKN KL LLDVLEFNQVVIFV+SV RC AL+ LL EQNFPA++IHR
Sbjct: 116 HGLQQYYVKLKDSEKNCKLLNLLDVLEFNQVVIFVRSVQRCTALAQLLGEQNFPAIAIHR 175
Query: 387 GMTQEERLKKYQEFKDFH------------------------------------------ 404
M QEERL +YQ+FKDF
Sbjct: 176 AMAQEERLARYQQFKDFRRRILVATNLFGRWMDIERVNVVFNYDMPEDSNTYLHWVACAG 235
Query: 405 ----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF S ENDAKILN+VQ RF+V++++LP E+D+STY+E
Sbjct: 236 RFGTKGLAITFVSHENDAKILNDVQGRFEVNVADLPQEMDISTYME 281
Score = 91.7 bits (226), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 44/48 (91%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGR MDIERVN+VFNYDMPEDS+TYLH VA AGRFGTK +
Sbjct: 195 RILVATNLFGRWMDIERVNVVFNYDMPEDSNTYLHWVACAGRFGTKGL 242
>gi|300176015|emb|CBK22232.2| unnamed protein product [Blastocystis hominis]
Length = 426
Score = 313 bits (802), Expect = 1e-82, Method: Compositional matrix adjust.
Identities = 182/455 (40%), Positives = 250/455 (54%), Gaps = 84/455 (18%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DN L+DY+DEE ++I + K +K Y +++SS F+DF LK EIL+AI DC
Sbjct: 7 DNAQLVDYDDEE--DEIPNERPIQGDEKVDSIKAHYATMNSSSFKDFYLKDEILKAISDC 64
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
F +++ I +A+ D+LCQAKS
Sbjct: 65 G--------FEHPSEVQHACI------------------------PRAITNKDVLCQAKS 92
Query: 159 GMGKTAVFVLATLQQLETTDSN--VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
GMGKTAVFV++TLQ L+ N + VLV+ HTRELAFQI EY+RF+K+M N++ VFF
Sbjct: 93 GMGKTAVFVISTLQMLKDDPENQDIQVLVIAHTRELAFQIQNEYKRFTKFMPNVRTEVFF 152
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG IQ D E L TH P IVVGTPGR+ L++ + + L+HF++DECD ++ + MR
Sbjct: 153 GGRNIQADREALNTH-PAIVVGTPGRVEDLIKRGWMKVDKLRHFVVDECDHIITSINMRA 211
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
+Q IF + P KQVMMF+ATL E + VC +FM DP+ + + DE+ LTLHGLQQ+Y+ +
Sbjct: 212 QLQSIFTACPIDKQVMMFTATLPPEAKAVCLRFMKDPLMIEL-DESALTLHGLQQYYLTI 270
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
+N+K KKL +LLD LEFNQ+VIFV++ R LS +L+ F I M+ E+RL+
Sbjct: 271 YDNQKTKKLMDLLDTLEFNQIVIFVRNSARARELSNILNRDQFNNTCITGDMSTEDRLEH 330
Query: 397 YQEFKDFH----------------------------------------------KGLAIT 410
Y+ FK F KGLAI+
Sbjct: 331 YKRFKGFDYRILVSTNLFGRGIDVDKVNVVINYDFPETANEYLHRVGRAGRFGTKGLAIS 390
Query: 411 FASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
F + E D K + VQ +F V + LPD ID S Y+
Sbjct: 391 FVTTEEDKKRMEEVQMKFAVDVPPLPDTIDKSLYM 425
>gi|123449042|ref|XP_001313244.1| ATP-dependent RNA helicase p47 [Trichomonas vaginalis G3]
gi|121895120|gb|EAY00315.1| ATP-dependent RNA helicase p47, putative [Trichomonas vaginalis G3]
Length = 420
Score = 312 bits (799), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 251/460 (54%), Gaps = 89/460 (19%)
Query: 37 MAD--NDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
MAD + +LL+YED+ + A K+KE +G YV +H++GFR+FLLKPE++ A
Sbjct: 1 MADPLDAELLNYEDDSTVDA--------APHKEKEQRGHYVGVHTTGFREFLLKPELMHA 52
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC 154
I DC F + + H A+LG DI+C
Sbjct: 53 ISDCG---------------------FEHPSQVQQECIPH-----------ALLGTDIIC 80
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
Q KSGMGKTAVFV++ LQQL+ V L + TRELAFQI+ E++RF+K+M + V
Sbjct: 81 QGKSGMGKTAVFVISVLQQLDPVPGEVSCLTIAPTRELAFQIATEFQRFTKFMPGVDSVV 140
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKMLEQLE 273
F+GG+P + LK P IVV TPGR L L++ K L++S +K F++DE DK+ E+ +
Sbjct: 141 FYGGIPKATNIATLKEKKPCIVVATPGRCLDLIKEKDVLDVSKVKFFVIDEADKVFEKQD 200
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
M+ V +I+ P KQV++FSAT+ ++ +C+ F H+ EVYVDD+ KLTLHGLQQ+Y
Sbjct: 201 MKDTVDKIYNRLPKDKQVLLFSATMPDSMKEICRSFTHNATEVYVDDDKKLTLHGLQQYY 260
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKL ENEKN+KL E+L+ +FNQVVIF+ R L+ LL+E P ++I MTQE+R
Sbjct: 261 VKLAENEKNRKLVEILENYKFNQVVIFLDKKERAKNLTQLLNECGHPTIAISGNMTQEDR 320
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
++ + EFK F KGL
Sbjct: 321 IRAFSEFKQFKHRILVATDLIARGIDVERVNIVINYDMPDSTDTYLHRVGRAGRFGTKGL 380
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
AI+F E D + +QDRF++ I +LP I TY+
Sbjct: 381 AISFVVTEEDVAMQKKIQDRFELKIEQLPASIAPDTYMNA 420
>gi|324505647|gb|ADY42424.1| Spliceosome RNA helicase BAT1 [Ascaris suum]
Length = 275
Score = 311 bits (797), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 162/274 (59%), Positives = 187/274 (68%), Gaps = 33/274 (12%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
D D LLDYE EE E A A + +K++KG Y SIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 5 DEDQLLDYE-EEQEEATDATKAENGTTAEKKIKGTYASIHSSGFRDFLLKPELLRAIVDC 63
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
E + V + +P+ A+LGMDI+CQAKS
Sbjct: 64 G--------------FEHPSEVQHECIPQ------------------AILGMDIVCQAKS 91
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
GMGKTAVFVLATLQQLE D V VLVMCHTRELAFQISKEYERFSKY IK+GVFFGG
Sbjct: 92 GMGKTAVFVLATLQQLEPVDGEVSVLVMCHTRELAFQISKEYERFSKYYPGIKIGVFFGG 151
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
+PI+KDEE LK + P IVVGTPGR L L R L L+ +K+F+LDECDKM+ +MRRDV
Sbjct: 152 MPIKKDEEVLKNNTPHIVVGTPGRTLQLARQGSLKLNKIKYFVLDECDKMIGDNDMRRDV 211
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
QEI + +P KQVMMFSATL K++R VCKKFM D
Sbjct: 212 QEIVKMTPQEKQVMMFSATLPKDLRAVCKKFMQD 245
>gi|70940952|ref|XP_740824.1| helicase [Plasmodium chabaudi chabaudi]
gi|56518807|emb|CAH79054.1| helicase, putative [Plasmodium chabaudi chabaudi]
Length = 317
Score = 306 bits (783), Expect = 2e-80, Method: Compositional matrix adjust.
Identities = 154/312 (49%), Positives = 206/312 (66%), Gaps = 47/312 (15%)
Query: 181 VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGT 239
V L + HTRELA+QI E++RFSKY+ N++ V +GG+ + K K +N P I++GT
Sbjct: 4 VRCLGIAHTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHVALFKGNNVPHIIIGT 63
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++
Sbjct: 64 PGRILALIREKYLLTDKIQHFVLDECDKCLEKLDMRGDVQKIFISTPLKKQVMFFSATMA 123
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
KE+R VCKKF+ +P+E+++DDEAKL LHGL QHYVKL+E +K +KL E+LD LEFNQV+I
Sbjct: 124 KEMRDVCKKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVII 183
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--------------- 404
FVKSVTR I L LL+E NFP+++IH G+ QEER+++Y +FK F
Sbjct: 184 FVKSVTRAITLDKLLTECNFPSIAIHGGLNQEERIERYDKFKKFENRILVSTDLFGRGID 243
Query: 405 -------------------------------KGLAITFASDENDAKILNNVQDRFDVSIS 433
KGLA+TF S + D LN VQ RF+V+IS
Sbjct: 244 IERINIVINYDMPENSDSYLHRVGRAGRFGTKGLAVTFVSSQEDTLALNEVQTRFEVAIS 303
Query: 434 ELPDEIDLSTYI 445
E+P++ID + YI
Sbjct: 304 EMPNKIDCNEYI 315
Score = 90.1 bits (222), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 45/48 (93%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILV+T+LFGRG+DIER+NIV NYDMPE+SD+YLHRV RAGRFGTK +
Sbjct: 230 RILVSTDLFGRGIDIERINIVINYDMPENSDSYLHRVGRAGRFGTKGL 277
>gi|428172586|gb|EKX41494.1| hypothetical protein GUITHDRAFT_88396 [Guillardia theta CCMP2712]
Length = 432
Score = 305 bits (780), Expect = 4e-80, Method: Compositional matrix adjust.
Identities = 176/462 (38%), Positives = 252/462 (54%), Gaps = 94/462 (20%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +DL Y+ + + E+ +A + + + ++S ++ FRDFLLKPE+LRAI
Sbjct: 1 MAD-EDLPQYDSDSDKEE-------EAPSARTQQTAGHISTSAASFRDFLLKPELLRAIN 52
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V +P+ + G DI+ QA
Sbjct: 53 DCA--------------FEHPSKVQEEAIPD------------------GLAGHDIVAQA 80
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
K+GMGKTAVFV L+++ + ++ LV+ HTRELA+Q++KE+ERF Y+ I V +
Sbjct: 81 KAGMGKTAVFVTVILERIAADEQSLQALVVVHTRELAYQVAKEFERFKAYLEGITVQCIY 140
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+P+ + E L P IVVG PGR+ LV+ K L+LS LK F++DE DK+LE+ +MR+
Sbjct: 141 GGVPLPQQEASLTKDKPHIVVGCPGRLKVLVQRKALDLSRLKIFVIDEVDKVLEKADMRQ 200
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIF ++P KQ M FSATL EI+ KF+ P E+ +D + KL+LHGL Q Y+KL
Sbjct: 201 DVQEIFYTTPKNKQTMCFSATLPPEIKGTVMKFVQKPKEILIDMD-KLSLHGLSQFYIKL 259
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396
+E++K +KL +L+D+LEFNQVVIFV+ RC +L+ +L E FP++ +H M ER+
Sbjct: 260 EESQKTRKLTDLMDILEFNQVVIFVRDKRRCHSLNKILQESKFPSIELHSDMDATERIAT 319
Query: 397 YQEFKDF----------------------------------------------HKGLAIT 410
Y +FK F +KG+AI+
Sbjct: 320 YNKFKKFEARILVTTDLGARGLDIERVNIVFNYDFPIEADTYMHRVGRAGRFGNKGMAIS 379
Query: 411 FASDE-------NDAKILNNVQDRFDVSISELPDEIDLSTYI 445
F S ND I VQ RF V + LPDEIDLS+Y+
Sbjct: 380 FISTTEDPSGKINDQSIFEKVQARFAVKVEPLPDEIDLSSYM 421
>gi|453088854|gb|EMF16894.1| P-loop containing nucleoside triphosphate hydrolase protein
[Mycosphaerella populorum SO2202]
Length = 337
Score = 300 bits (769), Expect = 8e-79, Method: Compositional matrix adjust.
Identities = 139/227 (61%), Positives = 178/227 (78%), Gaps = 2/227 (0%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRI 243
MCHTRELAFQI EY+RFSKYM +K VF+GG I+++E+ L K +P I+V TPGR+
Sbjct: 1 MCHTRELAFQIKNEYQRFSKYMPEVKTEVFYGGTDIKENEKLLSNKATHPHIIVATPGRL 60
Query: 244 LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
ALVR KKL L + F+LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS + +
Sbjct: 61 NALVREKKLRLGSVSRFVLDECDKMLDQIDMRRDVQEIFRATPPQKQVMMFSATLSNQTK 120
Query: 304 PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKS 363
PVCKKFM +P+E+YVDDEAKLTLHGLQQ+YVKL E EKN++L +LLD L +NQV+IFVK+
Sbjct: 121 PVCKKFMQNPLEIYVDDEAKLTLHGLQQYYVKLTEEEKNRRLNDLLDKLRYNQVIIFVKN 180
Query: 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
R L LL E NFP++++H M QEER+K+Y FK+F K + ++
Sbjct: 181 TLRASELDRLLRECNFPSITVHSNMPQEERIKRYTAFKNFDKRICVS 227
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 42/76 (55%), Gaps = 28/76 (36%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDS----------------------------DT 131
RI V+T++FGRG+DIER+N+ NYDMP+ + DT
Sbjct: 223 RICVSTDVFGRGIDIERINLAINYDMPDSTSNKEAERQKTVGADKGSAEFKESVAQAADT 282
Query: 132 YLHRVARAGRFGTKAV 147
YLHRV RAGRFGTK +
Sbjct: 283 YLHRVGRAGRFGTKGI 298
>gi|71982862|ref|NP_001021986.1| Protein HEL-1, isoform b [Caenorhabditis elegans]
gi|25809203|emb|CAD57690.1| Protein HEL-1, isoform b [Caenorhabditis elegans]
Length = 268
Score = 292 bits (747), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 154/276 (55%), Positives = 184/276 (66%), Gaps = 38/276 (13%)
Query: 39 DNDDLLDYEDEENTEQIVAD--GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
+ + LLDYE+E+ Q G GDA ++ KG Y SIHSSGFRDFLLKPEILRAI
Sbjct: 2 EEEQLLDYEEEQEEIQDKQPEVGGGDA----RKTKGTYASIHSSGFRDFLLKPEILRAIG 57
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+LGMD++CQA
Sbjct: 58 DCG--------------FEHPSEVQHECIPQ------------------AILGMDVVCQA 85
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
KSGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFSKY+ +KV VFF
Sbjct: 86 KSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFSKYLPGVKVAVFF 145
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+F+LDECDKM+ +MRR
Sbjct: 146 GGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDECDKMIGDADMRR 205
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
DVQEI + +P KQVMMFSATL KE+R VCK+FM D
Sbjct: 206 DVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQD 241
>gi|195448911|ref|XP_002071867.1| GK10220 [Drosophila willistoni]
gi|194167952|gb|EDW82853.1| GK10220 [Drosophila willistoni]
Length = 379
Score = 291 bits (744), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 158/354 (44%), Positives = 224/354 (63%), Gaps = 55/354 (15%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN---VYVLVMCHTRELAFQISKEY 200
++ V G+DI+CQ S + KT V VLATLQQL + N VLVMC++ ++A ++ K+Y
Sbjct: 32 SQVVHGVDIVCQTTSDVIKTMVVVLATLQQLYPAEDNSMSCRVLVMCNSCDMAQEMVKKY 91
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+RF+KY +I +G L I+++E ++ +P +V GTP R L L R K +N+S L+HF
Sbjct: 92 KRFAKYFPDISIG-----LAIEEEESFI-PESPHVVFGTPIRFLDLFRKKIVNVSHLRHF 145
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
ILDECDKM EQL MRR V EIFR+SPH KQV+MFS L+K +R +CK+ MH+ EVYV+
Sbjct: 146 ILDECDKMFEQLTMRRAVFEIFRNSPHKKQVVMFSTELNKNVRNICKRLMHEHHEVYVNH 205
Query: 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+L L G QQH+ ++E+EK+K+LF LL++LEFNQVVIFV++VT+C+ L L + NFP
Sbjct: 206 NDQLCLQGWQQHFDYVEESEKSKRLFYLLEILEFNQVVIFVETVTQCLTLVQQLIKLNFP 265
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
A+++H M Q++R+ Y +F+ ++
Sbjct: 266 AIALHGQMEQKQRVHHYHKFRGYYKRILVSNITLGQGMDIKGVNIIFVYQMPKDSISYLD 325
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
KGL ITF S+E DAK LN++Q RF + IS+LP+ IDLS+YIEGR
Sbjct: 326 RVARAGRFGAKGLGITFISNEYDAKFLNDLQYRFHLRISKLPEIIDLSSYIEGR 379
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/54 (59%), Positives = 40/54 (74%), Gaps = 1/54 (1%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
RILV+ G+GMDI+ VNI+F Y MP+DS +YL RVARAGRFG K LG+ +
Sbjct: 291 RILVSNITLGQGMDIKGVNIIFVYQMPKDSISYLDRVARAGRFGAKG-LGITFI 343
>gi|401421849|ref|XP_003875413.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
gi|322491650|emb|CBZ26923.1| putative RNA helicase [Leishmania mexicana MHOM/GT/2001/U1103]
Length = 435
Score = 289 bits (740), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 244/460 (53%), Gaps = 101/460 (21%)
Query: 40 NDDLLDYE-DEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+ DL D++ D+ T + A G + G + ++ GF+DF LK E+ AI
Sbjct: 2 SSDLADFDGDDVRTTVVAAQPMGVGM-------GTHSAVALGGFQDFCLKSELANAI--- 51
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
R E + V + +P KA+LG DIL QAKS
Sbjct: 52 -----------RENGFEHPSEVQHQALP------------------KAMLGADILAQAKS 82
Query: 159 GMGKTAVFVLATLQQLETTDSN----VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
GMGKTAVFV A L+Q+E +V+ H RELA+QI +E++RFSKY+ GV
Sbjct: 83 GMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGV 142
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGG+P ++ + LK P I+VGTPGR+ AL++NK + + +K F++DE D+ LE ++M
Sbjct: 143 FFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAFDTTRVKWFVVDEFDRCLEDVKM 202
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIF P KQVMMFSAT++ E+R V KKFM D E+YVD AKLTLHGL Q Y+
Sbjct: 203 RRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYM 262
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
+ E+EK ++L E+LDV+EFNQ +IF SV RC AL+ L + FP+ ++H M+QEERL
Sbjct: 263 SVTESEKTRRLAEILDVVEFNQAIIFTSSVERCEALNRQLQQMKFPSQAVHSRMSQEERL 322
Query: 395 KKYQEFK-----------------DFH-----------------------------KGLA 408
+ Y+ K DF KGL
Sbjct: 323 RVYESCKANNTRIMVATDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLT 382
Query: 409 ITF-ASDE----------NDAKILNNVQDRFDVSISELPD 437
I F +DE D I+ VQ+RF++ + EL D
Sbjct: 383 IAFITTDEKEIKRENRTYTDGGIMKEVQERFEMKVEELTD 422
>gi|157869116|ref|XP_001683110.1| putative RNA helicase [Leishmania major strain Friedlin]
gi|68223993|emb|CAJ04917.1| putative RNA helicase [Leishmania major strain Friedlin]
Length = 435
Score = 287 bits (735), Expect = 6e-75, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 243/460 (52%), Gaps = 101/460 (21%)
Query: 40 NDDLLDYE-DEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+ DL D++ D+ T + A G + G + ++ GF+DF LK E+ AI
Sbjct: 2 SSDLADFDGDDVRTTVVAAQPMGVGM-------GTHSAVALGGFQDFCLKSELANAI--- 51
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
R E + V + +P KA+LG DIL QAKS
Sbjct: 52 -----------RENGFEHPSEVQHQALP------------------KAMLGADILAQAKS 82
Query: 159 GMGKTAVFVLATLQQLETTDSN----VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
GMGKTAVFV A L+Q+E +V+ H RELA+QI +E++RFSKY+ GV
Sbjct: 83 GMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGV 142
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGG+P ++ + LK P I+VGTPGR+ AL++NK + + +K F++DE D+ LE ++M
Sbjct: 143 FFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFDRCLEDVKM 202
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIF P KQVMMFSAT++ E+R V KKFM D E+YVD AKLTLHGL Q Y+
Sbjct: 203 RRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYM 262
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
+ E EK ++L E+LDV+EFNQ +IF SV RC AL+ L + FP+ ++H M+QEERL
Sbjct: 263 NVTEPEKTRRLAEILDVVEFNQAIIFTSSVERCEALNRQLQQMKFPSQAVHSRMSQEERL 322
Query: 395 KKYQEFK-----------------DFH-----------------------------KGLA 408
+ Y+ K DF KGL
Sbjct: 323 RVYESCKANNTRIMVATDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLT 382
Query: 409 ITF-ASDE----------NDAKILNNVQDRFDVSISELPD 437
I F +DE D I+ VQ+RF++ + EL D
Sbjct: 383 IAFITTDEKEIKRENRTYTDGGIMKEVQERFEMKVEELTD 422
>gi|260949635|ref|XP_002619114.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
gi|238846686|gb|EEQ36150.1| conserved hypothetical protein [Clavispora lusitaniae ATCC 42720]
Length = 290
Score = 287 bits (735), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 147/288 (51%), Positives = 189/288 (65%), Gaps = 49/288 (17%)
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M ++K VF+GG PI +D E LK + P IVV TPGR+ ALV K + L +K F++DE
Sbjct: 1 MPDVKTDVFYGGTPIARDLEKLKNKDTCPHIVVATPGRLHALVAEKGIRLGNVKSFVIDE 60
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDK+LE L+MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM P+E+YVDDEAKL
Sbjct: 61 CDKVLESLDMRRDVQDIFRNTPHQKQVMMFSATLSQEIRPVCKKFMQSPLEIYVDDEAKL 120
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++
Sbjct: 121 TLHGLQQYYLKLSEKEKNRKLSDLLDSLEFNQVIIFVKSTQRANELNKLLCACNFPSIAV 180
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H GM QEER+ +Y+ FK+F+
Sbjct: 181 HSGMKQEERIARYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGR 240
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q RFDV ++E P+E ID STY+
Sbjct: 241 AGRFGTKGLAISFVSTKEDEEVLEKIQSRFDVKVTEFPEEGIDPSTYM 288
Score = 79.3 bits (194), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+P ++D YLHRV RAGRFGTK +
Sbjct: 202 RICVSTDVFGRGIDIERINLAINYDLPSEADQYLHRVGRAGRFGTKGL 249
>gi|146086104|ref|XP_001465449.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|398015018|ref|XP_003860699.1| RNA helicase, putative [Leishmania donovani]
gi|134069547|emb|CAM67870.1| putative RNA helicase [Leishmania infantum JPCM5]
gi|322498921|emb|CBZ33994.1| RNA helicase, putative [Leishmania donovani]
Length = 517
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/460 (38%), Positives = 243/460 (52%), Gaps = 101/460 (21%)
Query: 40 NDDLLDYE-DEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+ DL D++ D+ T + A G + G + ++ GF+DF LK E+ AI
Sbjct: 84 SSDLADFDGDDVRTTVVAAQPMGVGM-------GTHSAVALGGFQDFCLKSELANAI--- 133
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
R E + V + +P KA+LG DIL QAKS
Sbjct: 134 -----------RENGFEHPSEVQHQALP------------------KAMLGADILAQAKS 164
Query: 159 GMGKTAVFVLATLQQLETTDSN----VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
GMGKTAVFV A L+Q+E +V+ H RELA+QI +E++RFSKY+ GV
Sbjct: 165 GMGKTAVFVFALLEQVEKVPQGQKPYCQAVVLVHARELAYQIEQEFKRFSKYLPYATTGV 224
Query: 215 FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM 274
FFGG+P ++ + LK P I+VGTPGR+ AL++NK + + +K F++DE D+ LE ++M
Sbjct: 225 FFGGIPEDENVKQLKKEVPAIIVGTPGRMKALIQNKAFDTTHVKWFVVDEFDRCLEDVKM 284
Query: 275 RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334
RRDVQEIF P KQVMMFSAT++ E+R V KKFM D E+YVD AKLTLHGL Q Y+
Sbjct: 285 RRDVQEIFMKLPKEKQVMMFSATMTDELRDVAKKFMKDATEIYVDQRAKLTLHGLAQFYM 344
Query: 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
+ E EK ++L E+LDV+EFNQ +IF SV RC AL+ L + FP+ ++H M+QEERL
Sbjct: 345 NVTEPEKTRRLAEILDVVEFNQAIIFTSSVERCEALNRQLQQMKFPSQAVHSRMSQEERL 404
Query: 395 KKYQEFK-----------------DFH-----------------------------KGLA 408
+ Y+ K DF KGL
Sbjct: 405 RVYESCKANNTRIMVATDLFGRGVDFDRINLVVQYDMASEADSYLHRVGRAGRFGTKGLT 464
Query: 409 ITF-ASDE----------NDAKILNNVQDRFDVSISELPD 437
I F +DE D I+ VQ+RF++ + EL D
Sbjct: 465 IAFITTDEKEIKRENRTYTDGGIMKEVQERFEMKVEELTD 504
>gi|255720827|ref|XP_002545348.1| ATP-dependent RNA helicase SUB2 [Candida tropicalis MYA-3404]
gi|240135837|gb|EER35390.1| ATP-dependent RNA helicase SUB2 [Candida tropicalis MYA-3404]
Length = 290
Score = 286 bits (733), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 194/288 (67%), Gaps = 49/288 (17%)
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M ++K VF+GG+PI++D E LK + P IVV TPGR+ ALV K + L+ +K F++DE
Sbjct: 1 MPDVKTDVFYGGIPIKRDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDE 60
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDK+LE ++MRRDVQ+IFR++PH KQVMMFSATLS+EIRPVCKKFM +P+E+YVDDEAKL
Sbjct: 61 CDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQEIRPVCKKFMQNPLEIYVDDEAKL 120
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFV+S R L+ LL NFP++++
Sbjct: 121 TLHGLQQYYIKLDEKEKNRKLSDLLDSLEFNQVIIFVRSTQRANELNKLLCACNFPSIAV 180
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G+ QEER+++Y+ FK+F+
Sbjct: 181 HSGLPQEERIERYKSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGR 240
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q RFDV I++ P+E +D STY+
Sbjct: 241 AGRFGTKGLAISFVSSKEDEEVLEKIQSRFDVKITDFPEEGVDPSTYM 288
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+P ++D YLHRV RAGRFGTK +
Sbjct: 202 RICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGL 249
>gi|68485395|ref|XP_713375.1| hypothetical protein CaO19.13092 [Candida albicans SC5314]
gi|68485490|ref|XP_713328.1| hypothetical protein CaO19.5647 [Candida albicans SC5314]
gi|46434811|gb|EAK94211.1| hypothetical protein CaO19.5647 [Candida albicans SC5314]
gi|46434859|gb|EAK94258.1| hypothetical protein CaO19.13092 [Candida albicans SC5314]
Length = 290
Score = 286 bits (731), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 143/288 (49%), Positives = 193/288 (67%), Gaps = 49/288 (17%)
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M ++K VF+GG PI++D E LK + P IVV TPGR+ ALV K + L+ +K F++DE
Sbjct: 1 MPDVKTDVFYGGTPIKRDIEKLKNKDTCPHIVVATPGRLHALVEEKAIRLNNVKSFVIDE 60
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDK+LE ++MRRDVQ+IFR++PH KQVMMFSATLS++IRPVCKKFM +P+E+YVDDEAKL
Sbjct: 61 CDKVLESIDMRRDVQDIFRATPHQKQVMMFSATLSQDIRPVCKKFMQNPLEIYVDDEAKL 120
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y+KL E EKN+KL +LLD LEFNQV+IFVKS R L+ LL NFP++++
Sbjct: 121 TLHGLQQYYIKLDEKEKNRKLSDLLDSLEFNQVIIFVKSTRRANELNKLLCACNFPSIAV 180
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
H G+ QEER+++Y+ FK+F+
Sbjct: 181 HSGLPQEERIERYRSFKEFNKRICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGR 240
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLA++F S + D ++L +Q RFDV I+E P+E +D STY+
Sbjct: 241 AGRFGTKGLAVSFVSSKEDEEVLEKIQSRFDVKITEFPEEGVDPSTYM 288
Score = 79.0 bits (193), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+P ++D YLHRV RAGRFGTK +
Sbjct: 202 RICVSTDVFGRGIDIERINLAINYDLPNEADQYLHRVGRAGRFGTKGL 249
>gi|342183801|emb|CCC93281.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma congolense
IL3000]
Length = 436
Score = 285 bits (730), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 168/438 (38%), Positives = 236/438 (53%), Gaps = 96/438 (21%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P+
Sbjct: 29 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALPQ---- 70
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 187
A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 71 --------------AMLGADILAQAKSGMGKTAVFVFALLEQVEKVPEGQRPYCQAIVVA 116
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H RELA+QI +E++RF+KY+ + GVFFGG+P ++ + LK P IVV TPGRI +L+
Sbjct: 117 HARELAYQIEQEFKRFNKYLPHCTTGVFFGGIPEDENVKQLKKEVPAIVVATPGRICSLI 176
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ K L++S +K F++DE D+ LE ++MRRDVQ F +P KQVMMFSAT+++E+R V K
Sbjct: 177 QRKALDVSRVKWFVIDEFDRCLEDVKMRRDVQAAFLKTPKEKQVMMFSATMTEELRAVAK 236
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM +P E+YVD +KLTLHGL Q+Y+ L E +K +KL ++LD +EFNQV+IF +V RC
Sbjct: 237 KFMANPTEIYVDQRSKLTLHGLAQYYMNLTEAQKLRKLCDILDAVEFNQVIIFTSTVERC 296
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------- 404
ALS L FPA++IH M Q ERL+ Y+ K H
Sbjct: 297 EALSRQLQALKFPAMAIHSRMEQAERLRVYESCKTNHTRIIVATDIFGRGVDIDRINLVV 356
Query: 405 -----------------------KGLAITFASDE-----------NDAKILNNVQDRFDV 430
KGL + F +DE D I+ VQ+RF++
Sbjct: 357 QFDMASDADSYLHRVGRAGRFGTKGLTVAFLTDEEKEIKRENRKYTDQGIMKEVQERFEM 416
Query: 431 SISELPD---EIDLSTYI 445
+ EL D +++ S Y+
Sbjct: 417 QVQELTDIASQLNQSQYM 434
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 42/91 (46%), Positives = 62/91 (68%), Gaps = 10/91 (10%)
Query: 62 DALAKQ-KEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIER 116
+AL++Q + +K ++IHS + + E LR C RI+VAT++FGRG+DI+R
Sbjct: 297 EALSRQLQALKFPAMAIHSR-----MEQAERLRVYESCKTNHTRIIVATDIFGRGVDIDR 351
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+N+V +DM D+D+YLHRV RAGRFGTK +
Sbjct: 352 INLVVQFDMASDADSYLHRVGRAGRFGTKGL 382
>gi|154337278|ref|XP_001564872.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
gi|134061910|emb|CAM38950.1| putative RNA helicase [Leishmania braziliensis MHOM/BR/75/M2904]
Length = 413
Score = 285 bits (730), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 171/427 (40%), Positives = 229/427 (53%), Gaps = 93/427 (21%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P
Sbjct: 6 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALP----- 46
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 187
KA+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 47 -------------KAMLGADILAQAKSGMGKTAVFVFALLEQVEKAPQGQKPYCQAVVLV 93
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H RELA+QI +E++RFSKY+S GVFFGG+P ++ + LK P I+VGTPGR+ AL+
Sbjct: 94 HARELAYQIEQEFKRFSKYLSYATTGVFFGGIPEDENVKQLKKEVPAIIVGTPGRMKALI 153
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ K + + +K F++DE D+ LE ++MRRDVQEIF P KQVMMFSAT++ E+R V K
Sbjct: 154 QAKAFDTTRVKWFVVDEFDRCLEDVKMRRDVQEIFMKLPKEKQVMMFSATMTDELRDVAK 213
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM D E+YVD AKLTLHGL Q Y+ + E EK ++L E+LD +EFNQ +IF SV RC
Sbjct: 214 KFMKDATEIYVDQRAKLTLHGLAQFYMNVTEVEKTRRLAEILDAVEFNQAIIFTSSVERC 273
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK-----------------DFH------ 404
ALS L + FP+ ++H M+QEERL+ Y+ K DF
Sbjct: 274 EALSRQLQQMKFPSQAVHSRMSQEERLRVYENCKANNTRIMVATDLFGRGVDFDRINLVV 333
Query: 405 -----------------------KGLAITF-ASDE----------NDAKILNNVQDRFDV 430
KGL I F +DE D I+ VQ+RF++
Sbjct: 334 QYDMASEADSYLHRVGRAGRFGTKGLTIAFITTDEKEIKRENRTYTDGNIMKEVQERFEM 393
Query: 431 SISELPD 437
+ EL D
Sbjct: 394 KVEELMD 400
Score = 80.9 bits (198), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/91 (45%), Positives = 62/91 (68%), Gaps = 10/91 (10%)
Query: 62 DALAKQ-KEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIER 116
+AL++Q +++K ++HS + + E LR +C RI+VAT+LFGRG+D +R
Sbjct: 274 EALSRQLQQMKFPSQAVHSR-----MSQEERLRVYENCKANNTRIMVATDLFGRGVDFDR 328
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+N+V YDM ++D+YLHRV RAGRFGTK +
Sbjct: 329 INLVVQYDMASEADSYLHRVGRAGRFGTKGL 359
>gi|407406944|gb|EKF30991.1| RNA helicase, putative [Trypanosoma cruzi marinkellei]
Length = 436
Score = 284 bits (727), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 168/438 (38%), Positives = 237/438 (54%), Gaps = 96/438 (21%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P+
Sbjct: 29 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALPQ---- 70
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMC 187
A+LG DIL QAKSGMGKTAVFV A L+Q+E + +V+
Sbjct: 71 --------------AMLGADILAQAKSGMGKTAVFVFALLEQIEKVPEGQKPHCQAIVVV 116
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H RELA+QI +E++RF+KY+ GVFFGG+P ++ + LK P IVVGTPGR+ AL+
Sbjct: 117 HARELAYQIEQEFKRFNKYLPYCTTGVFFGGIPEDENVKQLKKEVPAIVVGTPGRLSALI 176
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ K L++S +K F++DE D+ LE ++MRRDVQ +F +P KQVMMFSAT++ E+R V K
Sbjct: 177 QRKALDVSRVKWFVVDEFDRCLEDVKMRRDVQTVFLKTPKEKQVMMFSATMTDELRNVAK 236
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM++P E+YVD AKLTLHGL Q+Y+ + E +K +KL ++LD +EFNQ +IF SV RC
Sbjct: 237 KFMNNPTEIYVDQRAKLTLHGLAQYYMNVTEAQKLRKLCDILDAVEFNQAIIFTSSVERC 296
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------- 404
ALS L FPA++IH M Q ERL+ Y+ K H
Sbjct: 297 EALSRQLQALKFPAMAIHSRMEQPERLRVYESCKSNHTRIIVATDLFGRGVDIDRINLVV 356
Query: 405 -----------------------KGLAITFASDE-----------NDAKILNNVQDRFDV 430
KGL I F +DE D ++ +Q+RF++
Sbjct: 357 QFDMASDADSCLHRVGRAGRFGTKGLTIAFLTDEEKEIKRENRKYTDHGVMKELQERFEM 416
Query: 431 SISELPD---EIDLSTYI 445
+ EL D +++ S Y+
Sbjct: 417 QVRELTDINTQLNQSQYM 434
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 10/91 (10%)
Query: 62 DALAKQ-KEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIER 116
+AL++Q + +K ++IHS + +PE LR C RI+VAT+LFGRG+DI+R
Sbjct: 297 EALSRQLQALKFPAMAIHSR-----MEQPERLRVYESCKSNHTRIIVATDLFGRGVDIDR 351
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+N+V +DM D+D+ LHRV RAGRFGTK +
Sbjct: 352 INLVVQFDMASDADSCLHRVGRAGRFGTKGL 382
>gi|71411514|ref|XP_808002.1| RNA helicase [Trypanosoma cruzi strain CL Brener]
gi|70872119|gb|EAN86151.1| RNA helicase, putative [Trypanosoma cruzi]
gi|407837305|gb|EKF99724.1| RNA helicase, putative [Trypanosoma cruzi]
Length = 436
Score = 283 bits (724), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 168/438 (38%), Positives = 237/438 (54%), Gaps = 96/438 (21%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P+
Sbjct: 29 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALPQ---- 70
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT----DSNVYVLVMC 187
A+LG DIL QAKSGMGKTAVFV A L+Q+E + +V+
Sbjct: 71 --------------AMLGADILAQAKSGMGKTAVFVFALLEQIEKVPEGQKPHCQGIVVV 116
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H RELA+QI +E++RF+KY+ GVFFGG+P ++ + LK P IVVGTPGR+ AL+
Sbjct: 117 HARELAYQIEQEFKRFNKYLPYCTTGVFFGGIPEDENVKQLKKEVPAIVVGTPGRLSALI 176
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ K L++S +K F++DE D+ LE ++MRRDVQ +F +P KQVMMFSAT++ E+R V K
Sbjct: 177 QRKALDVSRVKWFVVDEFDRCLEDVKMRRDVQTVFLKTPKEKQVMMFSATMTDELRNVAK 236
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM++P E+YVD AKLTLHGL Q+Y+ + E +K +KL ++LD +EFNQ +IF SV RC
Sbjct: 237 KFMNNPTEIYVDQRAKLTLHGLAQYYMNVTEAQKLRKLCDILDAVEFNQAIIFTSSVERC 296
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------- 404
ALS L FPA++IH M Q ERL+ Y+ K H
Sbjct: 297 EALSRQLQALKFPAMAIHSRMEQPERLRVYESCKSNHTRIIVATDLFGRGVDIDRINLVV 356
Query: 405 -----------------------KGLAITFASDE-----------NDAKILNNVQDRFDV 430
KGL I F +DE D ++ +Q+RF++
Sbjct: 357 QFDMASDADSCLHRVGRAGRFGTKGLTIAFLTDEEKEIKRENRKYTDHGVMKELQERFEM 416
Query: 431 SISELPD---EIDLSTYI 445
+ EL D +++ S Y+
Sbjct: 417 QVRELTDISTQLNQSQYM 434
Score = 82.4 bits (202), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 43/91 (47%), Positives = 62/91 (68%), Gaps = 10/91 (10%)
Query: 62 DALAKQ-KEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIER 116
+AL++Q + +K ++IHS + +PE LR C RI+VAT+LFGRG+DI+R
Sbjct: 297 EALSRQLQALKFPAMAIHSR-----MEQPERLRVYESCKSNHTRIIVATDLFGRGVDIDR 351
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+N+V +DM D+D+ LHRV RAGRFGTK +
Sbjct: 352 INLVVQFDMASDADSCLHRVGRAGRFGTKGL 382
>gi|74191580|dbj|BAE30363.1| unnamed protein product [Mus musculus]
Length = 227
Score = 280 bits (716), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 139/219 (63%), Positives = 161/219 (73%), Gaps = 46/219 (21%)
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KLTLHGLQQ+Y
Sbjct: 6 MRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKLTLHGLQQYY 65
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++IHRGM QEER
Sbjct: 66 VKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAIHRGMAQEER 125
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
L +YQ+FKDF KGL
Sbjct: 126 LSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 185
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
A+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 186 AVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 224
Score = 102 bits (255), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 138 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 185
>gi|224156267|ref|XP_002337696.1| predicted protein [Populus trichocarpa]
gi|222869567|gb|EEF06698.1| predicted protein [Populus trichocarpa]
Length = 247
Score = 280 bits (715), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 141/243 (58%), Positives = 171/243 (70%), Gaps = 32/243 (13%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LR+IVD E + V + +P+
Sbjct: 37 VKKGYVGIHSSGFRDFLLKPELLRSIVDSG--------------FEHPSEVQHECIPQ-- 80
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E T V LV+CHT
Sbjct: 81 ----------------AILGMDVICQAKSGMGKTAVFVLSTLQQIEPTSGQVIALVLCHT 124
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ERFS Y+ + KV VF+GG+ ++ ++ LK P +VVGTPGRILAL R+
Sbjct: 125 RELAYQICHEFERFSTYLPDTKVAVFYGGVNVKTHKDLLKNECPHVVVGTPGRILALARD 184
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 185 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKLTPHDKQVMMFSATLSKEIRPVCKKF 244
Query: 310 MHD 312
M D
Sbjct: 245 MQD 247
>gi|340056658|emb|CCC50994.1| putative ATP-dependent DEAD/H RNA helicase [Trypanosoma vivax Y486]
Length = 436
Score = 279 bits (714), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 166/438 (37%), Positives = 237/438 (54%), Gaps = 96/438 (21%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P+
Sbjct: 29 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALPQ---- 70
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMC 187
A+LG DIL QAKSGMGKTAVFV A L+Q+E +V+
Sbjct: 71 --------------AMLGADILAQAKSGMGKTAVFVFALLEQVEKVPEGQKPYCQAIVIA 116
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H+RELA+QI +E++RF+KY+ + VFFGG+P ++ + LK P IVV TPGRI AL+
Sbjct: 117 HSRELAYQIKQEFKRFNKYLPHCTTDVFFGGIPEDENVKQLKKEVPAIVVATPGRISALI 176
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ K L++S +K F++DE D+ LE ++MRRDVQ F +P KQVMMFSAT+++E+R V K
Sbjct: 177 QRKALDVSRVKWFVIDEFDRCLEDVKMRRDVQATFLKTPKEKQVMMFSATMTEELRTVAK 236
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM +P E+YVD +KLTLHGL Q+Y+ + E +K +KL E+LD +EFNQV+IF +V RC
Sbjct: 237 KFMSNPTEIYVDQRSKLTLHGLAQYYMNVTEAQKVRKLCEILDAVEFNQVIIFASTVERC 296
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD------------------------- 402
ALS L FPA++IH M Q RL+ Y+ K
Sbjct: 297 EALSRQLQALKFPAMAIHSRMEQSGRLRVYESCKTNNTRIIVATDLFGRGVDIDRINLVV 356
Query: 403 -----------FH----------KGLAITFASDE-----------NDAKILNNVQDRFDV 430
H KGL + F +DE +D ++ +VQ+RF++
Sbjct: 357 QFDMASDADSYLHRVGRAGRFGTKGLTVAFLTDEEKEIKRENRKYSDQGVMKDVQERFEM 416
Query: 431 SISELPD---EIDLSTYI 445
+ EL D +++ S Y+
Sbjct: 417 QVQELTDIATQLNQSQYM 434
>gi|226469668|emb|CAX76664.1| Helicase at 25E [Schistosoma japonicum]
Length = 231
Score = 279 bits (713), Expect = 3e-72, Method: Compositional matrix adjust.
Identities = 151/254 (59%), Positives = 176/254 (69%), Gaps = 34/254 (13%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A+AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQETRPNGEAVAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+L MD+LCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIFRSSPHTK 289
RDVQEIFR +PH K
Sbjct: 208 RDVQEIFRMTPHQK 221
>gi|238481238|ref|NP_001154706.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
gi|332004263|gb|AED91646.1| DEAD-box ATP-dependent RNA helicase 56 [Arabidopsis thaliana]
Length = 486
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 141/246 (57%), Positives = 170/246 (69%), Gaps = 32/246 (13%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
VK YV IHSSGFRDFLLKPE+LRAIVD ++ P +
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVDS-----------------------GFEHPSEV 72
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189
H +A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHT
Sbjct: 73 Q---HECI------PQAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHT 123
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELA+QI E+ RFS Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R
Sbjct: 124 RELAYQICNEFVRFSTYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALARE 183
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K L+L ++HFILDECDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKF
Sbjct: 184 KDLSLKNVRHFILDECDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKF 243
Query: 310 MHDPME 315
M D +E
Sbjct: 244 MQDFLE 249
Score = 165 bits (417), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 110/179 (61%), Gaps = 46/179 (25%)
Query: 313 PMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALST 372
PME+YVDDEAKLTLHGL QHY+KL E EKN+KL +LLD L+FNQVVIFVKSV+R L+
Sbjct: 306 PMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 365
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------------- 404
LL E NFP++ IH GM+QEERL +Y+ FK+ H
Sbjct: 366 LLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILVATDLVGRGIDIERVNIVINYDMP 425
Query: 405 ------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + +D+++LN VQ+RF+V I ELP++ID STY+
Sbjct: 426 DSADTYLHRVGRAGRFGTKGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYM 484
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 399 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 446
>gi|238593584|ref|XP_002393237.1| hypothetical protein MPER_07065 [Moniliophthora perniciosa FA553]
gi|215460419|gb|EEB94167.1| hypothetical protein MPER_07065 [Moniliophthora perniciosa FA553]
Length = 250
Score = 276 bits (707), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 131/206 (63%), Positives = 161/206 (78%), Gaps = 2/206 (0%)
Query: 207 MSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
M ++++ F+GG P+ KD E L K+ P IVV TPGR+ AL R+K L+ +KHF+LDE
Sbjct: 1 MPDVRISTFYGGTPVSKDAEVLRDKSKCPHIVVATPGRLNALARDKVLDAKNVKHFVLDE 60
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR++PH KQVMMFSATL+KEIR CKKFM +P+E++VDDE KL
Sbjct: 61 CDKMLEQLDMRRDVQEIFRTTPHHKQVMMFSATLAKEIRATCKKFMSNPLEIFVDDETKL 120
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQHYVKL+EN KN+KL ELLD LEFNQVVIFVKSV R I L LL NFP+++I
Sbjct: 121 TLHGLQQHYVKLEENGKNRKLNELLDTLEFNQVVIFVKSVARAIELDKLLVSCNFPSIAI 180
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H G+ QEER+ +Y FK F K + +
Sbjct: 181 HSGLQQEERIARYTAFKAFEKRILVA 206
Score = 40.8 bits (94), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/27 (62%), Positives = 22/27 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP 126
RILVAT++FGRG+D+ERVNI +P
Sbjct: 202 RILVATDIFGRGIDVERVNIGCQLRLP 228
>gi|349804073|gb|AEQ17509.1| putative dead (asp-glu-ala-asp) box polypeptide 39 [Hymenochirus
curtipes]
Length = 352
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 144/250 (57%), Positives = 170/250 (68%), Gaps = 58/250 (23%)
Query: 243 ILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302
+L + ++LN +KHF+LDECDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEI
Sbjct: 115 VLVMCHTRELNFKNVKHFVLDECDKMLEQLDMRRDVQEIFRMTPHEKQCMMFSATLSKEI 174
Query: 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVK 362
RPVC+KFM DPME +VDDE KLTLHGLQQ+YVKLK++EK LEFNQVVIFVK
Sbjct: 175 RPVCRKFMQDPME-FVDDETKLTLHGLQQYYVKLKDSEK----------LEFNQVVIFVK 223
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------------ 404
SV RC+AL+ LL EQNFPA++IHR M QEE+ +YQ+FKDF
Sbjct: 224 SVQRCMALAQLLVEQNFPAIAIHRNM-QEEKFSRYQQFKDFQRRILVATNLFGRGMDIER 282
Query: 405 ----------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KGLA+TF SDE DAKILN+VQDRF+V++ ELP
Sbjct: 283 VNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAVTFVSDEGDAKILNDVQDRFEVNVGELP 342
Query: 437 DEIDLSTYIE 446
DEID+STYIE
Sbjct: 343 DEIDISTYIE 352
Score = 137 bits (346), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 79/160 (49%), Positives = 96/160 (60%), Gaps = 35/160 (21%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
++LLDYE+++ + A A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 8 NELLDYEEDDEPQ---APSETPTPAVRKEVKGSYVSIHSSGFRDFLLKPELLRAIVDCG- 63
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
F +++ I +A+LGMDILCQAKSGM
Sbjct: 64 -------FEHPSEVQHECI------------------------PQAILGMDILCQAKSGM 92
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
GKTAV VLATLQQ+E D V VLVMCHTREL F+ K +
Sbjct: 93 GKTAVLVLATLQQIEAVDGQVSVLVMCHTRELNFKNVKHF 132
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 266 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 313
>gi|71746514|ref|XP_822312.1| ATP-dependent DEAD/H RNA helicase [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|70831980|gb|EAN77484.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
brucei strain 927/4 GUTat10.1]
gi|261331976|emb|CBH14969.1| ATP-dependent DEAD/H RNA helicase, putative [Trypanosoma brucei
gambiense DAL972]
Length = 436
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 150/334 (44%), Positives = 206/334 (61%), Gaps = 36/334 (10%)
Query: 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDT 131
G + ++ GF+DF LK E+ AI R E + V + +P+
Sbjct: 29 GTHSAVALGGFQDFCLKSELANAI--------------RENGFEHPSEVQHQALPQ---- 70
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLE-TTDSN---VYVLVMC 187
A+LG DIL QAKSGMGKTAVFV A L+Q+E TD +V+
Sbjct: 71 --------------AMLGADILAQAKSGMGKTAVFVFALLEQVEKPTDGQRPFCQAIVIA 116
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
H RELA+QI +E++RF+KY+ + GVFFGG+P ++ + LK P IVV TPGRI +L+
Sbjct: 117 HARELAYQIEQEFKRFNKYLPHCTTGVFFGGVPEDENIKQLKKEVPAIVVATPGRICSLI 176
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
K L++S +K F++DE D+ LE ++MRRDVQ F +P KQVMMFSAT+++E+R V K
Sbjct: 177 ERKALDVSRVKWFVVDEFDRCLEDVKMRRDVQTAFLKTPKEKQVMMFSATMTEELRNVAK 236
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KFM +P E+YVD +KLTLHGL Q+Y+ + E +K +KL ++LD +EFNQV+IF +V RC
Sbjct: 237 KFMSNPTEIYVDQRSKLTLHGLAQYYINVTEAQKLRKLCDILDAVEFNQVIIFTSTVERC 296
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
ALS L FP+ +IH M Q ERL Y+ K
Sbjct: 297 EALSRQLQALKFPSKAIHSRMEQAERLVVYESCK 330
Score = 78.6 bits (192), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/48 (64%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI+VAT++FGRG+DI+R+N+V +DM D+D+YLHRV RAGRFGTK +
Sbjct: 335 RIIVATDIFGRGVDIDRINLVVQFDMASDADSYLHRVGRAGRFGTKGL 382
>gi|344259201|gb|EGW15305.1| Spliceosome RNA helicase Bat1 [Cricetulus griseus]
Length = 229
Score = 275 bits (704), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 152/264 (57%), Positives = 177/264 (67%), Gaps = 42/264 (15%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEV--ETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC ++ P + H +A+LGMD+L
Sbjct: 59 AIVDC-----------------------GFEHPSEVQ---HECI------PQAILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKT VFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL- 272
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLG 206
Query: 273 --EMRRDVQEIFRSSPHTKQVMMF 294
+ Q ++ ++P ++ MMF
Sbjct: 207 EWQCSAWAQVLWGAAPWSQ--MMF 228
>gi|443894077|dbj|GAC71427.1| hypothetical protein PANT_3d00031 [Pseudozyma antarctica T-34]
Length = 277
Score = 275 bits (703), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 134/244 (54%), Positives = 174/244 (71%), Gaps = 34/244 (13%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
+G+YV IHS+GFRDFLLKPE+LRAI D + E + V +P+
Sbjct: 62 QGSYVGIHSTGFRDFLLKPELLRAISD--------------LGFEHPSEVQQECIPQ--- 104
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
++LGMD++CQAKSGMGKTAVFVLATLQQ+E D V VLV+CHTR
Sbjct: 105 ---------------SILGMDVVCQAKSGMGKTAVFVLATLQQIEPVDGEVSVLVLCHTR 149
Query: 191 ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVR 248
ELA+QI EY RF+KYM +++ GV +GG P+ +++ LK T P I+VGTPGR+ ALVR
Sbjct: 150 ELAYQIRNEYARFTKYMPDVRTGVIYGGTPVAENQAMLKDKTKCPHILVGTPGRMNALVR 209
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
+K L +S +KHF++DECDK+LEQ++MRRDVQ+IFR++PH KQVMMFSATL+KE+RP CKK
Sbjct: 210 DKSLKVSGVKHFVIDECDKILEQVDMRRDVQDIFRATPHHKQVMMFSATLAKEVRPTCKK 269
Query: 309 FMHD 312
FM +
Sbjct: 270 FMQN 273
>gi|354507651|ref|XP_003515868.1| PREDICTED: spliceosome RNA helicase Ddx39b-like, partial
[Cricetulus griseus]
Length = 205
Score = 272 bits (696), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 148/239 (61%), Positives = 166/239 (69%), Gaps = 37/239 (15%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E + A G G +K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 1 MAENDVDNELLDYEDDEV--ETAAGGDGTEAPAKKDVKGSYVSIHSSGFRDFLLKPELLR 58
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 59 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 86
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKT VFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 87 CQAKSGMGKTVVFVLATLQQLEPITGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 146
Query: 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL
Sbjct: 147 VFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQL 205
>gi|295666101|ref|XP_002793601.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226277895|gb|EEH33461.1| ATP-dependent RNA helicase SUB2 [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 467
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 147/303 (48%), Positives = 196/303 (64%), Gaps = 34/303 (11%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+L +D+LCQAKSG+GKTAVFVL TL QLE +LVMCHTRELA+QI EY RFSK
Sbjct: 195 AILNVDVLCQAKSGLGKTAVFVLTTLHQLEPVPGECSILVMCHTRELAYQIKNEYARFSK 254
Query: 206 YMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
Y+ ++K VF+GG P+QKD E L K + P IVVGTPGR+ ALVR+KKL+L +K F+LD
Sbjct: 255 YLPDVKTAVFYGGTPMQKDIELLSSKDNYPNIVVGTPGRLNALVRDKKLSLRSIKAFVLD 314
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS+E+RP+CKKFM +P+EV
Sbjct: 315 ECDKMLDQIDMRRDVQEIFRATPADKQVMMFSATLSQEVRPICKKFMRNPLEVI------ 368
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
+ Y + KE NK++ DV F + + I L + PA
Sbjct: 369 -------KRYKEFKEF--NKRICVATDV--------FGRGID--IERINLAINYDLPA-- 407
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPD-EIDLS 442
+ R+ + F KGLAI+F S E D ++L +++ RF+V++ E P+ +D S
Sbjct: 408 --DADSYLHRVGRAGRFGT--KGLAISFVSSEQDQEVLKDIEKRFEVALPEYPEGGVDSS 463
Query: 443 TYI 445
Y+
Sbjct: 464 AYM 466
Score = 82.8 bits (203), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 33/48 (68%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYD+P D+D+YLHRV RAGRFGTK +
Sbjct: 380 RICVATDVFGRGIDIERINLAINYDLPADADSYLHRVGRAGRFGTKGL 427
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 35/78 (44%), Positives = 44/78 (56%), Gaps = 16/78 (20%)
Query: 37 MADNDDLLDYEDEE-------NTEQIVADGAGDALAKQKEV---------KGAYVSIHSS 80
M+ +DL+DY DEE A G AL K+ ++ KG+YV IHS+
Sbjct: 1 MSHEEDLIDYSDEELQATDAAAASIAPAGTNGAALKKEGDLTVSGVRADKKGSYVGIHST 60
Query: 81 GFRDFLLKPEILRAIVDC 98
GFRDFLLK E+LRAI DC
Sbjct: 61 GFRDFLLKGELLRAITDC 78
>gi|56758736|gb|AAW27508.1| unknown [Schistosoma japonicum]
Length = 215
Score = 264 bits (675), Expect = 6e-68, Method: Compositional matrix adjust.
Identities = 145/247 (58%), Positives = 170/247 (68%), Gaps = 34/247 (13%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A+AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQETRPNGEAVAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+L MD+LCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L+MR
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTLDMR 207
Query: 276 RDVQEIF 282
RDV+E F
Sbjct: 208 RDVKEYF 214
>gi|242007507|ref|XP_002424581.1| ATP-dependent RNA helicase WM6, putative [Pediculus humanus
corporis]
gi|212508024|gb|EEB11843.1| ATP-dependent RNA helicase WM6, putative [Pediculus humanus
corporis]
Length = 315
Score = 263 bits (673), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 146/219 (66%), Positives = 162/219 (73%), Gaps = 46/219 (21%)
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L MRRDVQEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYV+DEAKLTLHGLQQ
Sbjct: 83 LYMRRDVQEIFRNTPHAKQVMMFSATLSKEIRPVCKKFMQDPMEVYVNDEAKLTLHGLQQ 142
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
HYVKLKENEKNKKLFELLD+LEFNQVVIFVKSV RC+AL+ LL+EQNFPA++IHRGM QE
Sbjct: 143 HYVKLKENEKNKKLFELLDILEFNQVVIFVKSVQRCMALAQLLTEQNFPAIAIHRGMVQE 202
Query: 392 ERLKKYQEFKDFH----------------------------------------------K 405
ERL +YQ+FKDF K
Sbjct: 203 ERLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 262
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
GLAITF S+E DAKILN VQ+RFDV+I+ELPDEIDLS+Y
Sbjct: 263 GLAITFVSEEADAKILNEVQERFDVNITELPDEIDLSSY 301
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 217 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 264
Score = 85.9 bits (211), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 42/62 (67%), Positives = 52/62 (83%), Gaps = 2/62 (3%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD++DLLDYEDEE TE +V +G+ D K+K VKG YVSIHSS F+DFLLKPEI+R+I+
Sbjct: 1 MADHEDLLDYEDEEQTEPVV-EGSIDGAGKEK-VKGTYVSIHSSAFKDFLLKPEIVRSIM 58
Query: 97 DC 98
DC
Sbjct: 59 DC 60
>gi|86451928|gb|ABC97359.1| UAP56/BAT1 [Streblomastix strix]
Length = 272
Score = 261 bits (667), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 135/268 (50%), Positives = 171/268 (63%), Gaps = 46/268 (17%)
Query: 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285
+ L+ NP IVVGTPGR L+ + L + + HFI+DECDK+LE+ +MR DVQ IF S
Sbjct: 5 QTLRDQNPNIVVGTPGRTKQLIEQRALKVDKVAHFIIDECDKVLEKNDMRGDVQRIFVSC 64
Query: 286 PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKL 345
P KQVMMFSATL KE+RPV +KFMHDPMEV+VD EA+LTLHGL Q++VKL+E+EKN+KL
Sbjct: 65 PIQKQVMMFSATLPKEVRPVARKFMHDPMEVFVDAEAELTLHGLXQYFVKLEESEKNRKL 124
Query: 346 FELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH- 404
LLD LEFNQVVIFV+S R L+ LL EQ FP++SIH + Q++RLK+YQEFKDF
Sbjct: 125 MNLLDALEFNQVVIFVRSCMRAEELNRLLREQEFPSISIHGDLPQDQRLKRYQEFKDFQS 184
Query: 405 ---------------------------------------------KGLAITFASDENDAK 419
KGLAITF+S + D +
Sbjct: 185 RILVSTDVFGRGMDIERVNIVFNYDMPENSDSYLHRVARAGRFGTKGLAITFSSSKEDRE 244
Query: 420 ILNNVQDRFDVSISELPDEIDLSTYIEG 447
+L VQ RF+V ISELPD+I + +Y+
Sbjct: 245 VLEKVQARFEVKISELPDQIAVESYMNA 272
Score = 95.5 bits (236), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 41/48 (85%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILV+T++FGRGMDIERVNIVFNYDMPE+SD+YLHRVARAGRFGTK +
Sbjct: 185 RILVSTDVFGRGMDIERVNIVFNYDMPENSDSYLHRVARAGRFGTKGL 232
>gi|148678968|gb|EDL10915.1| DEAD (Asp-Glu-Ala-Asp) box polypeptide 39, isoform CRA_a [Mus
musculus]
Length = 225
Score = 260 bits (664), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 139/241 (57%), Positives = 167/241 (69%), Gaps = 38/241 (15%)
Query: 35 SKMADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEI 91
S MA+ D +LLDY+++E + A +K+VKG+YVSIHSSGFRDFLLKPE+
Sbjct: 16 SAMAEQDVENELLDYDEDEEPQ---APQESTPAPPKKDVKGSYVSIHSSGFRDFLLKPEL 72
Query: 92 LRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151
LRAIVDC E + V + +P+ A+LGMD
Sbjct: 73 LRAIVDCG--------------FEHPSEVQHECIPQ------------------AILGMD 100
Query: 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211
+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFSKYM ++K
Sbjct: 101 VLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 160
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDECDKMLEQ
Sbjct: 161 VSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDECDKMLEQ 220
Query: 272 L 272
L
Sbjct: 221 L 221
>gi|67480889|ref|XP_655794.1| helicase [Entamoeba histolytica HM-1:IMSS]
gi|56472953|gb|EAL50406.1| helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|449708168|gb|EMD47681.1| spliceosome RNA helicase Bat1, putative [Entamoeba histolytica
KU27]
Length = 419
Score = 256 bits (655), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 216/419 (51%), Gaps = 85/419 (20%)
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+ + F + LK EIL AI DC + H
Sbjct: 30 VGTVAFSNMNLKKEILMAITDCG--------------------------------FEHPS 57
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+ KA+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRELA Q+
Sbjct: 58 EVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRELAVQV 117
Query: 197 SKEYERFSKYMSN-----IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK 251
KE++R K + I G F GG +KD E++KT+ P IV+GTPGRI +LVR
Sbjct: 118 QKEFDRMKKRLCEATGKEITTGTFVGGFDEKKDVEFIKTNKPTIVIGTPGRIASLVRQGA 177
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
LNLS L F++DECDK+L D+ EIF S+P KQVMMFSAT+S+E + +C+K++
Sbjct: 178 LNLSKLDTFVIDECDKVLGSAN-EIDIGEIFISTPKEKQVMMFSATISEENKTICRKYLK 236
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
+ +EV++DD KL LHGL ++ KL +N+K K +++D ++FNQ ++FV++ RC L
Sbjct: 237 NQLEVFIDDGEKLFLHGLHLYFKKLGDNDKRKTFMDIIDYIDFNQAIVFVENSDRCRVLV 296
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------------------- 402
L + +P ++ M QE R K+YQ F+D
Sbjct: 297 KKLKQIGYPCGILYGRMDQEIREKEYQRFRDGESRVLVSTDLCGRGIDVAKVNLVVNFDM 356
Query: 403 -------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DLST 443
H KG+AI+F + D K+L VQ RF V + ELP + D+ T
Sbjct: 357 PNDSDQFLHRVGRAGRFGTKGVAISFIDTDEDEKVLKEVQSRFAVQMDELPSSLKDIPT 415
>gi|300123033|emb|CBK24040.2| unnamed protein product [Blastocystis hominis]
Length = 1030
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 148/426 (34%), Positives = 225/426 (52%), Gaps = 90/426 (21%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
+G Y + SGF+ F LK EI++AI +C E + V + +P
Sbjct: 632 CRGHYAGVGGSGFQSFFLKEEIMKAISEC--------------GFEHPSEVQSQCIP--- 674
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD----------S 179
KA++ DILCQA+SGMGKT VFV++ LQ ++ +D +
Sbjct: 675 ---------------KALMRGDILCQARSGMGKTCVFVISVLQNIKHSDHVRFFPSDAHT 719
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
+V HTRE+A QI++E+ R KY+ +I + FGG+P++K +K+ I+VGT
Sbjct: 720 QTTCVVFSHTREMAIQITREFIRLGKYLPDIVIKTVFGGVPLRKSMADIKS-GCDILVGT 778
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
GRI LVR+K L+ S LK F++DECD+ +E L R D+QE+FRS+P KQV+MF+ATLS
Sbjct: 779 AGRIADLVRHKALDTSQLKFFVVDECDRQIETLSTRADIQEVFRSAPLDKQVLMFTATLS 838
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
+ + C K+M P+ + +DD+ KLTLHGL Q + ++ E +KN++L E LD +FNQ VI
Sbjct: 839 ENAKASCLKYMRSPLCIEIDDK-KLTLHGLTQFFTRVTEGQKNRRLTEFLDNSDFNQAVI 897
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------- 402
+V S R AL L++E FP +++ M EER++ + +FK+
Sbjct: 898 YVSSNARARALQKLMTEWCFPCIALTANMPVEERMRHFIQFKEVKTRILITTQVMGRGVD 957
Query: 403 -------------------FHK----------GLAITFASDENDAKILNNVQDRFDVSIS 433
H+ G+ ++F S E D K+L V+ RF+ +
Sbjct: 958 VEKVNMVVNYDFPPSSNDYLHRVGRAGRFGTNGVTMSFVSSEEDEKVLAEVESRFETHMH 1017
Query: 434 ELPDEI 439
E+ I
Sbjct: 1018 EIKGAI 1023
>gi|340508679|gb|EGR34336.1| hypothetical protein IMG5_015740 [Ichthyophthirius multifiliis]
Length = 711
Score = 255 bits (651), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 162/445 (36%), Positives = 237/445 (53%), Gaps = 90/445 (20%)
Query: 39 DNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DND++ +Y D+ + E + + K ++ V+ HSS F DF LK ++LR++ +
Sbjct: 6 DNDNIPEYNDDSDDE---LNNKAYNIQKPDQM----VANHSS-FNDFNLKEDLLRSVKEA 57
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
F R +++ N + N A+ G DILCQAK+
Sbjct: 58 --------GFERPSEVQ-YNCIPN-----------------------AIHGTDILCQAKA 85
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
G GKTAVFVL+ L QL LV+CHTRELAFQI E++R KY +N K FGG
Sbjct: 86 GTGKTAVFVLSILNQLSDDTPPYSCLVLCHTRELAFQIKNEFKRLGKY-TNFKTRAIFGG 144
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALV--RNKKLNLSLLKHFILDECDKMLEQLEMRR 276
+ Q D LK PQI+V TPGR L+L+ RN + + +K+F++DECD+++E ++MR
Sbjct: 145 VDEQDDIAILKQKKPQILVATPGRCLSLMNMRNSVIEIKNVKYFVVDECDRVMESIKMRS 204
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL 336
DVQEIF P KQVMMFS T++ + + +C+KFM D +E++++D +KL LHGL+Q+++KL
Sbjct: 205 DVQEIFMKLPLQKQVMMFSGTIANDSKKICRKFMKDQLEIFIEDNSKLVLHGLEQYHLKL 264
Query: 337 KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLS-EQNFPAVSIHRGMTQEERLK 395
+E +K L + L L FNQV+IFV V R + LS L ++ I+R + QE+R K
Sbjct: 265 EEKQKIPILIQFLTQLSFNQVIIFVNKVERAMYLSKYLQDDKKLENSVIYRTLPQEQRTK 324
Query: 396 KYQEFKD------------------------------------FH----------KGLAI 409
YQEFK+ H KG AI
Sbjct: 325 VYQEFKEGKKRILVATDLFGRGIDIERVNLVINFDMPEKQDDYMHRVGRAGRFETKGTAI 384
Query: 410 TFASDENDAKILNNVQDRFDVSISE 434
+F S + + ++L ++QD F ISE
Sbjct: 385 SFVSTKENEQVLKDIQDNFSTKISE 409
>gi|407038866|gb|EKE39347.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
Length = 419
Score = 254 bits (650), Expect = 4e-65, Method: Compositional matrix adjust.
Identities = 154/419 (36%), Positives = 216/419 (51%), Gaps = 85/419 (20%)
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+ + F + LK EIL AI DC + H
Sbjct: 30 VGTVAFSNMNLKKEILMAITDCG--------------------------------FEHPS 57
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+ KA+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRELA Q+
Sbjct: 58 EVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRELAVQV 117
Query: 197 SKEYERFSKYMSN-----IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK 251
KE++R K + I G F GG +KD E++KT+ P IV+GTPGRI +LVR
Sbjct: 118 QKEFDRMKKRLCEATGKEIPTGTFVGGFDEKKDVEFIKTNKPTIVIGTPGRIASLVRQGA 177
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
LNL+ L F++DECDK+L D+ EIF S+P KQVMMFSAT+S+E + +C+K++
Sbjct: 178 LNLNKLDTFVIDECDKVLGSAN-EIDIGEIFISTPKEKQVMMFSATISEENKTICRKYLK 236
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
+ +EV++DD KL LHGL ++ KL +N+K K +++D ++FNQ ++FV++ RC L
Sbjct: 237 NQLEVFIDDGEKLFLHGLHLYFKKLGDNDKRKTFMDIIDYIDFNQAIVFVENSDRCRVLV 296
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------------------- 402
L + +P ++ M QE R K+YQ F+D
Sbjct: 297 KKLKQIGYPCGILYGRMDQEIREKEYQRFRDGESRVLVSTDLCGRGIDVAKVNLVVNFDM 356
Query: 403 -------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DLST 443
H KG+AI+F + D K+L VQ RF V + ELP + D+ T
Sbjct: 357 PNDSDQFLHRVGRAGRFGTKGVAISFIDTDEDEKVLKEVQSRFAVQMDELPSSLKDIPT 415
>gi|167387857|ref|XP_001738337.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
gi|167394345|ref|XP_001740939.1| spliceosome RNA helicase Bat1 [Entamoeba dispar SAW760]
gi|165894738|gb|EDR22621.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
gi|165898511|gb|EDR25351.1| spliceosome RNA helicase Bat1, putative [Entamoeba dispar SAW760]
Length = 419
Score = 254 bits (650), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 155/419 (36%), Positives = 215/419 (51%), Gaps = 85/419 (20%)
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+ + F + LK EIL AI DC + H
Sbjct: 30 VGTVAFSNMNLKKEILMAITDCG--------------------------------FEHPS 57
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
+ KA+L DILCQAKSGMGKTAVFV++ L Q V LV+CHTRELA Q
Sbjct: 58 EVQSQVIPKALLKQDILCQAKSGMGKTAVFVISILNQGLCLGDYVSALVICHTRELALQA 117
Query: 197 SKEYERFSKYMSN-----IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK 251
KE++R K + I G F GG+ +KD E++KTH P IV+GTPGRI +LVR K
Sbjct: 118 QKEFDRMKKRLCEATGKEIPTGTFVGGVEEKKDIEFIKTHKPTIVIGTPGRIASLVRQKA 177
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
L+LS L F++DECDK+L ++ EIF SSP KQVMMFSAT+S+ + +C+K++
Sbjct: 178 LDLSKLDTFVIDECDKVLGSTS-EIEIGEIFISSPKEKQVMMFSATISETNKGICRKYLK 236
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371
+ +EV++DD KL LHGL ++ KL +N+K K +++D ++FNQ ++F ++ RC L
Sbjct: 237 NQLEVFIDDGEKLFLHGLHLYFKKLGDNDKKKTFMDIIDYIDFNQAIVFAENSERCRVLV 296
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------------------- 402
L + +P ++ M QE R K+YQ F+D
Sbjct: 297 KKLKQIGYPCGILYGRMDQEIREKEYQRFRDGESRVLVSTDLCGRGIDVAKVNLVVNFDM 356
Query: 403 -------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DLST 443
H KG+AI+F E D K+L VQ RF V + ELP + D+ T
Sbjct: 357 PNDSDQFLHRVGRAGRFGTKGVAISFIDTEEDDKVLKEVQSRFAVQMDELPSSLKDIPT 415
>gi|444317196|ref|XP_004179255.1| hypothetical protein TBLA_0B09205 [Tetrapisispora blattae CBS 6284]
gi|387512295|emb|CCH59736.1| hypothetical protein TBLA_0B09205 [Tetrapisispora blattae CBS 6284]
Length = 453
Score = 254 bits (649), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 153/438 (34%), Positives = 237/438 (54%), Gaps = 86/438 (19%)
Query: 45 DYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVA 104
D ED E TE +LA Q + + S F+DF+LKP +++A++D
Sbjct: 44 DSEDVEMTE-----NEDPSLASQSRQNNSDAQLIPS-FKDFMLKPVLIKALMD------- 90
Query: 105 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTA 164
++ E + V +P+ A++G DILCQ KSG GKTA
Sbjct: 91 -------IEFEHPSEVQQQALPQ------------------ALIGRDILCQGKSGSGKTA 125
Query: 165 VFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224
+F+L+TLQ + V V+CH+RELA+Q+++EY++FSKYM ++ GG I+ D
Sbjct: 126 IFILSTLQNINLIRGEVSCAVLCHSRELAYQVNEEYKKFSKYMVDLITVASIGGTSIKND 185
Query: 225 EEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282
K P IVV TPGR+L LV+NK ++ + LK ++DECDK+L + +MR E+F
Sbjct: 186 GGVFKNKKKCPNIVVTTPGRLLVLVKNKIVDPTQLKTIVIDECDKVLSEEKMRNAFDEVF 245
Query: 283 RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKN 342
+ + + KQ+MMFSATLS E + +C+K+ +P+++Y+ +E KL L L+Q++ K++E K
Sbjct: 246 KLTLNEKQMMMFSATLSNEAKEICQKYTQNPLQIYIANEKKLILPRLKQYFFKVEEKRKT 305
Query: 343 KKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK- 401
+KL E+LD + FNQV+IFVKS L+T+L+E NF A++I+ RL+ Y++FK
Sbjct: 306 QKLTEILDDVNFNQVIIFVKSPKNAKLLATILNELNFTAITINGYTKTNLRLQNYKDFKE 365
Query: 402 ----------------DFH-----------------------------KGLAITFASDEN 416
DF KGLAI+F S++
Sbjct: 366 NEVKILVTTDMFGRGLDFKRVNLAINYDLPISIDTFLHRVGRTGRFGSKGLAISFISNKK 425
Query: 417 DAKILNNVQDRFDVSISE 434
D +++ N+Q RFD+ + E
Sbjct: 426 DEEMIENIQQRFDIRLQE 443
>gi|300707962|ref|XP_002996171.1| hypothetical protein NCER_100776 [Nosema ceranae BRL01]
gi|239605448|gb|EEQ82500.1| hypothetical protein NCER_100776 [Nosema ceranae BRL01]
Length = 397
Score = 252 bits (644), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 147/443 (33%), Positives = 233/443 (52%), Gaps = 96/443 (21%)
Query: 40 NDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSG-FRDFLLKPEILRAIVDC 98
+D+L+DY ++ T VK + + SS F+DFLL+ E++ +I D
Sbjct: 3 DDELIDYREDLQT-----------------VKKSQTKLKSSAQFKDFLLRDELMESIKDA 45
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
F +++++ I KA+LG D+LCQAKS
Sbjct: 46 A--------FEHPSEVQQMAI------------------------PKAILGQDLLCQAKS 73
Query: 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG 218
G GKTAVFVL+TLQQL+ D ++VM HT+E+A Q+ +EY RFSK M N+ VG +GG
Sbjct: 74 GTGKTAVFVLSTLQQLKVVDKETVIIVMVHTKEMAEQVKQEYLRFSKKMDNVSVGAVYGG 133
Query: 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDV 278
I++D + L T +P +++GTPGR+ +V+ + LNL +K F++DECDKM+ ++MR D
Sbjct: 134 NDIEEDIKLLGTCSPSVLIGTPGRLAEIVKRRALNLKHVKFFVMDECDKMIGDIDMRCDT 193
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QE+F ++P KQ +MF+ATL+K C +F+ +P V VDDE+KLTL+GL+Q YV++++
Sbjct: 194 QEVFINTPRNKQTLMFTATLNKYTTDECLRFLDNPFIVRVDDESKLTLYGLKQSYVEVEQ 253
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
+ K KL +L+ +NQ +IF + + L E+ A +H G+ +ER ++
Sbjct: 254 SNKLNKLVSVLNSTTYNQAMIFTAAKLLPTKICNFLKEKGLVAGDLHAGLKSDERKERLL 313
Query: 399 EFKDFH----------------------------------------------KGLAITFA 412
FK + +G A++F
Sbjct: 314 SFKKYEYRIMVTTDLMSRGIDVQDVNFVINFDMPDSPETYLHRVGRAGRFETEGQAVSFI 373
Query: 413 SDENDAKILNNVQDRFDVSISEL 435
+E D LN +Q RF+++IS++
Sbjct: 374 CNEEDRIKLNEIQSRFEIAISKI 396
>gi|56759172|gb|AAW27726.1| unknown [Schistosoma japonicum]
Length = 233
Score = 250 bits (638), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 138/237 (58%), Positives = 161/237 (67%), Gaps = 34/237 (14%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MAD +LLDYEDEE G+A+AK K VKGAYV+IHSSGFRDF+LKPE+LRAIV
Sbjct: 1 MADEAELLDYEDEEQETVQETRPNGEAVAK-KGVKGAYVTIHSSGFRDFILKPELLRAIV 59
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
DC E + V + +P+ A+L MD+LCQA
Sbjct: 60 DCG--------------FEHPSEVQHECIPQ------------------AILSMDVLCQA 87
Query: 157 KSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
KSGMGKTAVFV+ATLQQL+ ++N VLV+CHTRELAFQISKEYERFSKYM IKVGVF
Sbjct: 88 KSGMGKTAVFVIATLQQLDPEGEANTSVLVLCHTRELAFQISKEYERFSKYMPKIKVGVF 147
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
FGG+PI+KD E L IVVGTPGRIL LVR+K L L +KHFI+DECDKML+ L
Sbjct: 148 FGGMPIRKDIETLTKSPVHIVVGTPGRILDLVRSKTLKLQHVKHFIIDECDKMLDTL 204
>gi|340508110|gb|EGR33893.1| hypothetical protein IMG5_032380 [Ichthyophthirius multifiliis]
Length = 389
Score = 249 bits (637), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 129/273 (47%), Positives = 177/273 (64%), Gaps = 4/273 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DILCQAK+G GKTAVFVL+ L QL LV+CHTRELAFQI E++R K
Sbjct: 67 AIHGTDILCQAKAGTGKTAVFVLSVLNQLAEDTPPYSCLVLCHTRELAFQIKNEFKRLGK 126
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV--RNKKLNLSLLKHFILD 263
Y +N K FGG+ Q D LK P I+V TPGR L+L+ +N + +K+F++D
Sbjct: 127 Y-TNFKTRAIFGGVEEQDDIAILKQKKPHILVATPGRCLSLINMKNSVIEAKNVKYFVVD 185
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECD+++E ++MR DVQEIF P KQVMMFS T+S E + +C+KFM D +E++++D AK
Sbjct: 186 ECDRVMESIKMRSDVQEIFMKLPLQKQVMMFSGTMSTESKKICRKFMKDQLEIFIEDNAK 245
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ-NFPAV 382
L LHGL+Q+++KL+E +K L + L+ L FNQV+IFV V R I LS L E+
Sbjct: 246 LVLHGLEQYHLKLEEKQKIPILIQFLNQLSFNQVIIFVNKVERAIYLSKYLQEEKKLENS 305
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415
I+R ++Q++R K Y EFK+ K + E
Sbjct: 306 VIYRTLSQDQRTKVYSEFKEGKKEFQLQLIYSE 338
>gi|402073041|gb|EJT68685.1| hypothetical protein GGTG_13748, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 406
Score = 246 bits (627), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 137/325 (42%), Positives = 193/325 (59%), Gaps = 38/325 (11%)
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
S F F LK EIL AI DC F +++R+ I
Sbjct: 61 SDFYAFSLKTEILNAIEDCG--------FEHASEVQRICI-------------------- 92
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+AV+G DI+CQA SG+GKTAVFVL+TLQQ E S LV+CHT ELA QI E
Sbjct: 93 ----PQAVIGKDIICQASSGLGKTAVFVLSTLQQAEPIASICSALVLCHTCELALQIYTE 148
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYL--KTHNPQIVVGTPGRILALVRNKKLNLSLL 257
Y+RFSK+M +I + VFFGG P KD + L K+ +P I++ TPGR+ AL+R L L L
Sbjct: 149 YKRFSKHMPDINIAVFFGGRPFYKDTDLLQNKSTHPHIIISTPGRLKALMRWGNLRLDGL 208
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHT-KQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+ +LDECD+M+ Q ++ RDVQ+IFR +P +Q M+FSATLS++I+ +CK M +P+EV
Sbjct: 209 RTLVLDECDQMIGQPDIYRDVQDIFRCTPQNQRQFMVFSATLSEDIKQICKAEMREPIEV 268
Query: 317 YVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376
+ T L+Q Y+ L E EK +L +LL + F Q +IFVKS R ++ L +
Sbjct: 269 QIKGTISKT---LRQDYIVLNEQEKINRLHDLLGEVPFRQAIIFVKSAGRSTWVNRSLQK 325
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
+ F ++ IH G++Q++R+ Y + K
Sbjct: 326 RGFYSIEIHSGISQDDRIHCYNQLK 350
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 26/45 (57%), Positives = 37/45 (82%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
D R+ VAT++F RG+++E V++V NYDMP ++D+YLHRV RAGR
Sbjct: 353 DIMRVCVATDVFSRGINLEGVDLVINYDMPANADSYLHRVGRAGR 397
>gi|255646475|gb|ACU23716.1| unknown [Glycine max]
Length = 226
Score = 244 bits (623), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 126/224 (56%), Positives = 149/224 (66%), Gaps = 46/224 (20%)
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
MLE L+MR+DVQ+IF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKLTLH
Sbjct: 1 MLESLDMRKDVQDIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKLTLH 60
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GL QHY+KLKE EKN+KL +LLD L+FNQVVIFVKSV+R L LL E NFP++ IH G
Sbjct: 61 GLVQHYIKLKEEEKNRKLNDLLDALDFNQVVIFVKSVSRAAELDKLLVECNFPSICIHSG 120
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
M+QEERLK+Y+ FK+ H
Sbjct: 121 MSQEERLKRYKGFKEGHTRILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGR 180
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF S D +LNNVQ RF+V I +LP++ID STY+
Sbjct: 181 FGTKGLAITFVSCSTDVDVLNNVQSRFEVDIKQLPEQIDTSTYM 224
Score = 87.8 bits (216), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 139 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 186
>gi|119587899|gb|EAW67495.1| hCG16339 [Homo sapiens]
Length = 309
Score = 242 bits (617), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 138/252 (54%), Positives = 169/252 (67%), Gaps = 25/252 (9%)
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ RFSKYM N+K KDEE LK + IVVGTPGRILAL NK LNL +KH
Sbjct: 75 HGRFSKYMPNVK-----------KDEEVLKKNCLHIVVGTPGRILALAGNKSLNLKHIKH 123
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
FI +ECDK EQL M RDVQ IFR +P ATLSKEIRPVC KFM DP+E++VD
Sbjct: 124 FISNECDKTFEQLNMCRDVQGIFRMTP--------PATLSKEIRPVCHKFMQDPVEIFVD 175
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+E KL LHGLQQ+Y+KLK+N+KN K ++LL+VLEFNQV+IF+KSV R IA + LL +
Sbjct: 176 NEMKLMLHGLQQYYMKLKDNQKNWKRYDLLNVLEFNQVMIFLKSVQRRIASAQLLG-MDI 234
Query: 380 PAVSIHRGMTQEERLKKYQEF-----KDFHKGLAITFASDENDAKILNNVQDRFDVSISE 434
V+I E Y + + K LAITF SDENDAKILN++QDRF+V+ S+
Sbjct: 235 ERVNIAFNYDMPEDSDTYLHWVARASRFGTKSLAITFVSDENDAKILNDMQDRFEVNRSD 294
Query: 435 LPDEIDLSTYIE 446
LPDE D+ + E
Sbjct: 295 LPDERDIFSCFE 306
Score = 73.9 bits (180), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 34/37 (91%)
Query: 111 GMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
GMDIERVNI FNYDMPEDSDTYLH VARA RFGTK++
Sbjct: 231 GMDIERVNIAFNYDMPEDSDTYLHWVARASRFGTKSL 267
>gi|146182736|ref|XP_001025134.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila]
gi|146143751|gb|EAS04889.2| DEAD/DEAH box helicase family protein [Tetrahymena thermophila
SB210]
Length = 476
Score = 241 bits (614), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/436 (35%), Positives = 217/436 (49%), Gaps = 84/436 (19%)
Query: 60 AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119
A QK +G HSS F DF LK ++LR++ + F R +++ I
Sbjct: 19 ANSTAPVQKHAQGFNTGGHSS-FNDFSLKQDLLRSVKEAG--------FERPSEVQHQCI 69
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
A+ G D+LCQAK+G GKTAVFVL+ L QL
Sbjct: 70 ------------------------PNAIHGKDVLCQAKAGTGKTAVFVLSVLNQLPDDAK 105
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
LV+CHTRELAFQI E++R K+ +N KV +GG+ D LKT P I+V T
Sbjct: 106 PFSCLVLCHTRELAFQIKNEFKRLGKF-TNFKVKAVYGGVEESVDIHTLKTKKPHILVAT 164
Query: 240 PGRILALVRNKK--LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
PGR L+L++ K + +++FI+DECD++L +MR DVQ IF P KQVMMFS T
Sbjct: 165 PGRCLSLIKAKPSVIETQNIEYFIIDECDRVLSSNKMRSDVQNIFYELPRKKQVMMFSGT 224
Query: 298 LSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQV 357
+S E + C+KF+ D +E++V+D +KL LHGL+Q+++K++E +K L +LLD +NQV
Sbjct: 225 MSDESKKTCRKFLQDQIEIFVEDNSKLVLHGLEQYHIKIEEKQKISVLRQLLDQGNYNQV 284
Query: 358 VIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD--------------- 402
+IFV R LS L+++ I+R + Q ER K Y EFK+
Sbjct: 285 IIFVNKQDRAKYLSKYLTDKGHDNAFIYRNLDQSERTKIYSEFKEGKNRVLVATDLVGRG 344
Query: 403 ---------------------FH----------KGLAITFASDENDAKILNNVQDRFDVS 431
H KG AI+F S + D K+L +Q F
Sbjct: 345 IDIERVNLVINFDMPQITEDYMHRVGRAGRFETKGQAISFISTKEDEKVLAEIQSTFSTQ 404
Query: 432 ISE--LPDEIDLSTYI 445
I E L E LS I
Sbjct: 405 IKEYNLKQESQLSINI 420
>gi|413950342|gb|AFW82991.1| hypothetical protein ZEAMMB73_566534, partial [Zea mays]
Length = 185
Score = 241 bits (614), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 135/165 (81%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL+TLQQ++ V LV+CHTRELA+QI E+ERFSKY+
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIDPVAGQVAALVLCHTRELAYQICHEFERFSKYLPE 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
++V VF+GG+ I+ ++ LK P IVVGTPGRILAL R+K L L ++HFILDECDKML
Sbjct: 61 LRVAVFYGGVHIKNHKDLLKNECPHIVVGTPGRILALARDKDLPLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCK+FM D M
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKRFMQDVM 165
>gi|227206296|dbj|BAH57203.1| AT5G11170 [Arabidopsis thaliana]
Length = 177
Score = 238 bits (608), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 134/165 (81%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R K L+L ++HFILDECDKML
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM D M
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDVM 165
>gi|62320763|dbj|BAD95431.1| DEAD BOX RNA helicase RH15 - like protein [Arabidopsis thaliana]
Length = 177
Score = 238 bits (607), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 112/165 (67%), Positives = 134/165 (81%)
Query: 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
MD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS Y+ +
Sbjct: 1 MDVICQAKSGMGKTAVFVLSTLQQVEPSPGQVSALVLCHTRELAYQICNEFVRFSTYLPD 60
Query: 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269
KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R K L+L ++HFILDECDKML
Sbjct: 61 TKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDECDKML 120
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314
E L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM D M
Sbjct: 121 ESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDVM 165
>gi|194380710|dbj|BAG58508.1| unnamed protein product [Homo sapiens]
Length = 243
Score = 237 bits (605), Expect = 8e-60, Method: Compositional matrix adjust.
Identities = 120/178 (67%), Positives = 135/178 (75%), Gaps = 8/178 (4%)
Query: 135 RVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 194
R++RA + A L C ++S G + L+ Q+ V VLVMCHTRELAF
Sbjct: 29 RMSRAPMSPSTA-LAFVTSCSSQSCSGPLSTVALSIRQK-------VSVLVMCHTRELAF 80
Query: 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNL 254
QISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL
Sbjct: 81 QISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 140
Query: 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
+KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 141 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 198
>gi|374094672|gb|AEY84721.1| WM6-like RNA helicase, partial [Pandalus platyceros]
Length = 171
Score = 231 bits (590), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 107/132 (81%), Positives = 119/132 (90%)
Query: 279 QEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE 338
QEIFR++PH KQVMMFSATLSKEIRPVCKKFM DPMEVYVDDEAKLTLHGLQQHYVK+KE
Sbjct: 1 QEIFRNTPHEKQVMMFSATLSKEIRPVCKKFMQDPMEVYVDDEAKLTLHGLQQHYVKIKE 60
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
NEKN+KLFELLD LEFNQVVIFVKSV RC+AL+ LL EQNFPA+ IHR M+QEERL +YQ
Sbjct: 61 NEKNRKLFELLDALEFNQVVIFVKSVQRCMALAQLLVEQNFPAIGIHRAMSQEERLSRYQ 120
Query: 399 EFKDFHKGLAIT 410
+FKDF K + +
Sbjct: 121 QFKDFQKRILVA 132
Score = 99.0 bits (245), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 44/44 (100%), Positives = 44/44 (100%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG
Sbjct: 128 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 171
>gi|67467036|ref|XP_649638.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|56466118|gb|EAL44250.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|407040845|gb|EKE40355.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
gi|449704037|gb|EMD44359.1| ATPdependent RNA helicase SUB2, putative [Entamoeba histolytica
KU27]
Length = 419
Score = 229 bits (583), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 144/420 (34%), Positives = 211/420 (50%), Gaps = 86/420 (20%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV S F++ LK EI+++I DC
Sbjct: 26 KDTYVGTVS--FQEMGLKKEIMQSITDCG------------------------------- 52
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
+ H + KA+L DILCQAKSGMGKTAVFVL+ L Q +V +V+CHTR
Sbjct: 53 -FEHPSEVQSQVIPKALLRQDILCQAKSGMGKTAVFVLSILNQGLFLGDHVSAIVICHTR 111
Query: 191 ELAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
ELA Q+ E++R K + +I+ + GG P D + LK P I+VGTPGR+ +
Sbjct: 112 ELARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVDDLKNRKPTIIVGTPGRLAS 171
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
L + L+LS L F++DECDK+L + D+ +F SS KQVMMFSAT+S++ + +
Sbjct: 172 LNNSGALDLSKLDTFVIDECDKILSS-KSELDIMSLFMSSSKNKQVMMFSATISEQNKAL 230
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVT 365
C+K++ +P EV++DD KL LHGL + KL++ EK KL E+LD ++FNQ +IF
Sbjct: 231 CRKYLKNPFEVFIDDGEKLFLHGLHLYSKKLQDMEKQDKLGEILDEIDFNQAIIFADRKE 290
Query: 366 RCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------------- 402
RC A+ L ++ +P ++ M + R ++++ F+
Sbjct: 291 RCQAIVQRLKKEKYPCGILYGRMEEYLREREFERFRKGESRILVSTDLCGRGIDIEKVNL 350
Query: 403 -------------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
H KG+AI+F E D K+L VQ RF V + ELPD++
Sbjct: 351 VVNFDMALDSDQFLHRVGRAGRFGTKGVAISFIDTEEDEKVLKEVQSRFAVQMKELPDDL 410
>gi|430813259|emb|CCJ29387.1| unnamed protein product [Pneumocystis jirovecii]
Length = 220
Score = 228 bits (581), Expect = 5e-57, Method: Compositional matrix adjust.
Identities = 114/218 (52%), Positives = 146/218 (66%), Gaps = 46/218 (21%)
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRD+QE+FR++PH KQVMMFSATLS EIRP+CKKFM +P+E+YVDDE KLTLHGLQQHY
Sbjct: 1 MRRDIQEVFRATPHQKQVMMFSATLSTEIRPICKKFMQNPLEIYVDDETKLTLHGLQQHY 60
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
VKL+E+ KN+KL +LLD LEFNQVVIFVKSV R L LL E NFP++ IH + QEER
Sbjct: 61 VKLEESAKNRKLNDLLDALEFNQVVIFVKSVQRASELDRLLRECNFPSICIHGALPQEER 120
Query: 394 LKKYQEFKDFHK----------------------------------------------GL 407
+ +Y+ FK+F+K GL
Sbjct: 121 ISRYKLFKNFNKRICVATDVFGRGIDIERVNVVFNYDTPGDADTYLHRVGRAGRFGTRGL 180
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
+ITF S DA+IL+ +Q+RF+V+I+ELP++ID+STY+
Sbjct: 181 SITFVSSSGDAEILDKIQERFEVNITELPEQIDVSTYM 218
Score = 87.8 bits (216), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%), Gaps = 3/60 (5%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
RI VAT++FGRG+DIERVN+VFNYD P D+DTYLHRV RAGRFGT+ G+ I + SG
Sbjct: 133 RICVATDVFGRGIDIERVNVVFNYDTPGDADTYLHRVGRAGRFGTR---GLSITFVSSSG 189
>gi|307195782|gb|EFN77596.1| ATP-dependent RNA helicase WM6 [Harpegnathos saltator]
Length = 271
Score = 228 bits (580), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 123/219 (56%), Positives = 140/219 (63%), Gaps = 71/219 (32%)
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQH 332
+MRRDVQEIFRS+PH+KQVMMFSATLSKEIRPVCKKFM D
Sbjct: 67 DMRRDVQEIFRSTPHSKQVMMFSATLSKEIRPVCKKFMQD-------------------- 106
Query: 333 YVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392
ENEKNKKLFELLDVLEFNQVVIFVKSV RC+AL+ LL+EQNFPA+ IHRGMTQEE
Sbjct: 107 -----ENEKNKKLFELLDVLEFNQVVIFVKSVQRCMALAQLLTEQNFPAIGIHRGMTQEE 161
Query: 393 RLKKYQEFKDFH----------------------------------------------KG 406
RL +YQ+FKDF KG
Sbjct: 162 RLSRYQQFKDFQKRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKG 221
Query: 407 LAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
LAIT SDE+DAKILN+VQ+RFDV+I+ELPDEIDL++Y+
Sbjct: 222 LAITLVSDESDAKILNDVQERFDVNITELPDEIDLASYM 260
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 175 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 222
Score = 102 bits (254), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 52/62 (83%), Positives = 53/62 (85%), Gaps = 3/62 (4%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MADNDDLLDYEDEE EQ DG+GD AK KEVKG YVSIHSSGFRDFLLKPEILRAIV
Sbjct: 1 MADNDDLLDYEDEEQNEQ--PDGSGDVPAK-KEVKGTYVSIHSSGFRDFLLKPEILRAIV 57
Query: 97 DC 98
DC
Sbjct: 58 DC 59
>gi|167388903|ref|XP_001738737.1| ATP-dependent RNA helicase SUB2 [Entamoeba dispar SAW760]
gi|165897879|gb|EDR24925.1| ATP-dependent RNA helicase SUB2, putative [Entamoeba dispar SAW760]
Length = 419
Score = 227 bits (579), Expect = 9e-57, Method: Compositional matrix adjust.
Identities = 145/427 (33%), Positives = 215/427 (50%), Gaps = 88/427 (20%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV S F++ LK EI+++I DC
Sbjct: 26 KDTYVGTVS--FQEMGLKKEIMQSITDCG------------------------------- 52
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190
+ H + KA+L D+LCQAKSGMGKTAVFVL+ L Q +V +V+CHTR
Sbjct: 53 -FEHPSEVQSQVIPKALLRQDVLCQAKSGMGKTAVFVLSILNQGLFLGDHVSAIVVCHTR 111
Query: 191 ELAFQISKEYERFSKYM-----SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
ELA Q+ E++R K + +I+ + GG P D + LK P I+VGTPGR+ +
Sbjct: 112 ELARQVQNEFDRMKKRLVESIGKDIQTASYIGGNPESNDVDDLKNRKPTIIVGTPGRLAS 171
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
L + L+LS L F++DECDK+L + D+ +F +S KQVMMFSAT+S++ + +
Sbjct: 172 LNNSGALDLSKLDTFVIDECDKILSS-KSELDIMSLFMNSSKNKQVMMFSATISEQNKAL 230
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVT 365
C+K++ +P EV++DD KL LHGL + KL++ EK +KL E+LD ++FNQ +IF
Sbjct: 231 CRKYLKNPFEVFIDDGEKLFLHGLHLYSKKLQDMEKQEKLGEILDEIDFNQAIIFADRKE 290
Query: 366 RCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD----------------------- 402
RC A+ L ++ +P ++ M + R ++++ F+
Sbjct: 291 RCQAVVQRLKKEKYPCGILYGRMEEYLREREFERFRKGESRILVSTDLCGRGIDIEKVNL 350
Query: 403 -------------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
H KG+AI+F E D K+L VQ RF V + ELPD++
Sbjct: 351 VVNFDMASDSDQFLHRVGRAGRFGTKGVAISFIDTEEDEKVLGEVQSRFAVQMKELPDDL 410
Query: 440 D--LSTY 444
STY
Sbjct: 411 KEIPSTY 417
>gi|340384568|ref|XP_003390783.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like, partial
[Amphimedon queenslandica]
Length = 252
Score = 226 bits (577), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 105/142 (73%), Positives = 121/142 (85%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD++CQAKSGMGKTAVFV+ATLQQLE + V VLVMCH RELA+QI KEYERFS
Sbjct: 111 QAILGMDVICQAKSGMGKTAVFVIATLQQLEIVEGQVSVLVMCHARELAYQIYKEYERFS 170
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KY +K VFFGG+ + KDEE LKT+ P IVVGTPGRILALVR K LNL +KHFILDE
Sbjct: 171 KYFDGVKTSVFFGGISVMKDEETLKTNCPHIVVGTPGRILALVRQKTLNLHNVKHFILDE 230
Query: 265 CDKMLEQLEMRRDVQEIFRSSP 286
CDKMLEQL+MRRDVQEIF+++P
Sbjct: 231 CDKMLEQLDMRRDVQEIFKATP 252
>gi|440302714|gb|ELP95021.1| ATP-dependent RNA helicase SUB2, putative [Entamoeba invadens IP1]
Length = 420
Score = 226 bits (575), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 148/421 (35%), Positives = 211/421 (50%), Gaps = 87/421 (20%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD 130
K YV I F++ LK EI++AI DC
Sbjct: 26 KDNYVGIIP--FQEMGLKKEIMQAITDCG------------------------------- 52
Query: 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQ-LETTDSNVYVLVMCHT 189
+ H + KA++ DILCQAKSGMGKTAVFV+ L Q L V LV+CHT
Sbjct: 53 -FEHPSEVQSQVIPKALIRQDILCQAKSGMGKTAVFVITILNQGLFIGKKGVSTLVICHT 111
Query: 190 RELAFQISKEYERFSKYMSN-----IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL 244
ELA Q+ KE++R K + I + GG P D E LK +P IV+GTPGR+L
Sbjct: 112 HELAKQVQKEFDRMKKRLETAIEKEINTASYIGGTPEADDAEDLKNRSPSIVIGTPGRLL 171
Query: 245 ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304
L L+LS L F++DECDK+L + DV +F S TKQ MMFSAT+S+ +
Sbjct: 172 GLFNKGVLDLSQLDTFVIDECDKVLSS-NSQIDVTTLFMKSNKTKQTMMFSATISEPNKV 230
Query: 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV 364
+C+K++ +P+EV++DD KL LHGL+ +Y KL + +K KL ++LD ++FNQ +IFV
Sbjct: 231 ICRKYLRNPLEVFIDDGEKLFLHGLKLYYKKLDDKQKVAKLTDILDYIDFNQCMIFVDGK 290
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD---------------------- 402
RC + L + +P ++ M +E R K+++ F+
Sbjct: 291 ERCKVVIETLKKGEYPCGVLYGKMEEELREKEFERFRKGESRILVATDLCGRGIDIERVN 350
Query: 403 --------------FH----------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
H KGLA++F E+D KI++ VQ+RF + + ELPD+
Sbjct: 351 LVVNFDMPEDSDQFLHRVGRAGRFGTKGLAVSFVDSEDDQKIMDEVQNRFSLKMPELPDD 410
Query: 439 I 439
I
Sbjct: 411 I 411
>gi|402072782|gb|EJT68479.1| hypothetical protein GGTG_13947, partial [Gaeumannomyces graminis
var. tritici R3-111a-1]
Length = 217
Score = 224 bits (571), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 126/247 (51%), Positives = 154/247 (62%), Gaps = 43/247 (17%)
Query: 37 MADNDDLLDYEDEE-NTEQIVADGA------GDALAKQKEV--KGAYVSIHSSGFRDFLL 87
M+ +DL+DY DEE NT + A + G+ A V KG+YV IHS+GFRDFLL
Sbjct: 1 MSAEEDLIDYSDEELNTNETAAPASASNGKKGELAAGGNNVDKKGSYVGIHSTGFRDFLL 60
Query: 88 KPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
KPE+LRAI DC F ++++ I +A+
Sbjct: 61 KPELLRAIGDCG--------FEHPSEVQQTCI------------------------PQAM 88
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFSKYM
Sbjct: 89 LGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYTRFSKYM 148
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+IK GVFFGG PIQKD E LK + P I+VGTPGR+ ALVR+K L L ++ F+LDEC
Sbjct: 149 PDIKTGVFFGGTPIQKDAELLKNKDTHPHIIVGTPGRLNALVRDKFLRLGSVRIFVLDEC 208
Query: 266 DKMLEQL 272
DKML+Q+
Sbjct: 209 DKMLDQI 215
>gi|391335247|ref|XP_003742007.1| PREDICTED: ATP-dependent RNA helicase DDX39A-like [Metaseiulus
occidentalis]
Length = 389
Score = 223 bits (569), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 126/354 (35%), Positives = 194/354 (54%), Gaps = 56/354 (15%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+LCQ+K+G GKTAVF+L+TL Q+E D + +V+ TRELA Q EY+ K
Sbjct: 36 ALAGHDLLCQSKTGSGKTAVFILSTLNQMEFEDF-IETVVLVPTRELAVQTVAEYQMLGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ N + FFGGLP+ + +++ P IVV TPGR+ LV+ + ++L ++HFILDEC
Sbjct: 95 FLKNCRTSAFFGGLPLNVNIANIRSSAPNIVVATPGRMRVLVQERYISLRRVRHFILDEC 154
Query: 266 DKMLEQLE-MRRDVQEIFRSSPHTKQVMMFSATLS-----KEIRPVCKKFMHDPMEVYVD 319
D +L M D++ I P +QV MF+AT++ +E R + K MH P + V
Sbjct: 155 DMLLRPTSNMCCDIRYILDHCPEDRQVQMFTATITVPEAEREKRFL--KLMHCPKYILVK 212
Query: 320 DEAKLTLHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +LTL + Q+ + L+ E +K + L LLD +EFNQV IFV +V RC L +L E+N
Sbjct: 213 KQCELTLSSVLQYRLTLEDECKKTRALINLLDRIEFNQVAIFVNTVERCCVLCGILEEKN 272
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDF----------------------------------- 403
F A+++H MTQE+RL+ + +FKDF
Sbjct: 273 FSAIAVHSNMTQEDRLENFAKFKDFRRRIVVATDLMGRGIDVEFVTFVINYDVPIDEKTY 332
Query: 404 -----------HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
+ LA++F + D +L +VQ+ + V++ ELP +D Y++
Sbjct: 333 LHRIGRTGRMDRRALAVSFCVSQQDQGVLQDVQEAYGVTLVELPQNLDPEVYLD 386
Score = 63.9 bits (154), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/48 (56%), Positives = 35/48 (72%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI+VAT+L GRG+D+E V V NYD+P D TYLHR+ R GR +A+
Sbjct: 300 RIVVATDLMGRGIDVEFVTFVINYDVPIDEKTYLHRIGRTGRMDRRAL 347
>gi|387598239|gb|AFJ91775.1| DEAD box ATP dependent RNA helicase, partial [Ostrea edulis]
Length = 126
Score = 220 bits (561), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 104/126 (82%), Positives = 117/126 (92%)
Query: 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
TPGRILAL +K+LNL +KHF+LDECDKML L+MRRDVQEIFR++PH KQVMMFSATL
Sbjct: 1 TPGRILALCNSKQLNLKHVKHFVLDECDKMLAALDMRRDVQEIFRNTPHEKQVMMFSATL 60
Query: 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVV 358
SKEIR VCK+FM DPMEVYVDD++KLTLHGLQQHYVKLK+NEKN+KLFELLDVLEFNQV+
Sbjct: 61 SKEIRAVCKRFMQDPMEVYVDDDSKLTLHGLQQHYVKLKDNEKNRKLFELLDVLEFNQVI 120
Query: 359 IFVKSV 364
IFVKSV
Sbjct: 121 IFVKSV 126
>gi|402468594|gb|EJW03725.1| hypothetical protein EDEG_01983 [Edhazardia aedis USNM 41457]
Length = 450
Score = 215 bits (547), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 157/496 (31%), Positives = 227/496 (45%), Gaps = 150/496 (30%)
Query: 37 MADNDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIV 96
MA DDLL+Y D +++ + S + F+DFLL+ E+ +I
Sbjct: 1 MAKTDDLLEYHD-------------------RQITTSSSSKTTHYFKDFLLRDELNESIK 41
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D F D+++ I KA+LG DIL QA
Sbjct: 42 DIQ--------FEHPSDVQQQCI------------------------PKAILGCDILAQA 69
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS-NIKVGVF 215
KSG GKTAVFVL+ LQQ++ DS + + + HT+ELA Q+ E++RF ++ ++KV F
Sbjct: 70 KSGTGKTAVFVLSVLQQIK--DSQLSCVCLVHTKELAQQVCNEFKRFVRHFKFDVKVEEF 127
Query: 216 FGGLPIQKD-----------------EEYLKTHN-------------------------- 232
+GG+ ++ D K H+
Sbjct: 128 YGGVSVENDLVRLGKSEKADTFNPGYANRFKVHSAERSDHGFGSRINDSRTGIMINESNE 187
Query: 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVM 292
P I +GTPGR L L++ ++ S +KHF++DE D++L L MR+ VQ+IF +P KQ M
Sbjct: 188 PTIFIGTPGRTLDLLKRNAVDFSRVKHFVMDEVDELLVDLSMRKTVQDIFFHTPVQKQTM 247
Query: 293 MFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-------KNKKL 345
+F+ATL+ EI+ C F+ DP V +D+E KLTLHGLQQ +V + E K K L
Sbjct: 248 LFTATLNDEIKETCLLFLKDPHVVIIDEEKKLTLHGLQQFFVTTQYAEGLNETTPKFKVL 307
Query: 346 FELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH- 404
++D EFNQ+VIFV+ R L+ LL FPA+ IH GM + RL+ + FK+
Sbjct: 308 ENIIDNTEFNQMVIFVRDKHRAKILAKLLRINAFPAIEIHSGMDVKTRLESFLRFKNLKE 367
Query: 405 ---------------------------------------------KGLAITFASDENDAK 419
KG+AI+ D
Sbjct: 368 RILIATNLMARGIDVQDVNVVVNFDMPECAETYLHRVGRAGRFETKGIAISLLESPADKT 427
Query: 420 ILNNVQDRFDVSISEL 435
ILN+VQ RF+VSI E+
Sbjct: 428 ILNDVQARFEVSIKEM 443
>gi|440494146|gb|ELQ76551.1| ATP-dependent RNA helicase [Trachipleistophora hominis]
Length = 397
Score = 213 bits (541), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 184/341 (53%), Gaps = 52/341 (15%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTRELAFQISKEYE 201
KAVLG DI+CQAKSG GKT VFVL+ LQ++ D + V V+ + +T+E+ QI+ E+
Sbjct: 58 KAVLGADIICQAKSGTGKTVVFVLSALQRINAEDVSPARVQVMAVANTKEMVVQIANEFR 117
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
RF Y +++KV + FGG+ + D E LK +VVGTPGR+ L++ L++S L+ I
Sbjct: 118 RFMSY-TDLKVEMVFGGVDVNGDVEKLKAR-VDVVVGTPGRLFDLIQRGALDVSALRILI 175
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
+DE D +L L R VQ I +P KQ M+F+ATLS E++ C + +P + VD+E
Sbjct: 176 IDEVDSILSSLSSRWTVQRIIYRTPVAKQTMLFTATLSNEMKSTCLLMVRNPFVLQVDEE 235
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLD-VLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
KLTLHGL+Q YV + E+ K KL L+D + + +Q VIF + R L L + P
Sbjct: 236 RKLTLHGLEQGYVNVIEDNKRDKLIGLIDSIRDISQCVIFCRDKRRVEVLCEHLKTKGLP 295
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH------------------------------------ 404
AV+I ER++++ FK+ +
Sbjct: 296 AVAITSDYDTNERMQRFMSFKNLNYRFLVTTNLMARGIDIAEINLVVNYDMAEDAQTYLH 355
Query: 405 ----------KGLAITFASDENDAKILNNVQDRFDVSISEL 435
+G A++F +E D +LN VQ+RF+VSI E+
Sbjct: 356 RVGRAGRFETRGTAVSFICNEEDIVVLNEVQERFEVSIKEI 396
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+R LV TNL RG+DI +N+V NYDM ED+ TYLHRV RAGRF T+
Sbjct: 320 YRFLVTTNLMARGIDIAEINLVVNYDMAEDAQTYLHRVGRAGRFETRG 367
>gi|149028104|gb|EDL83555.1| HLA-B-associated transcript 1A, isoform CRA_b [Rattus norvegicus]
Length = 182
Score = 211 bits (536), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 109/179 (60%), Positives = 125/179 (69%), Gaps = 46/179 (25%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
ME++VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ L
Sbjct: 1 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 60
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------- 404
L EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 61 LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPE 120
Query: 405 -----------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 121 DSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 179
Score = 101 bits (251), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 93 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 140
>gi|168985555|emb|CAQ10633.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 186
Score = 210 bits (535), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 108/178 (60%), Positives = 124/178 (69%), Gaps = 46/178 (25%)
Query: 313 PMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALST 372
PME++VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+
Sbjct: 9 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 68
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH---------------------------- 404
LL EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 69 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMP 128
Query: 405 ------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 129 EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 186
Score = 100 bits (250), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 102 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 149
>gi|154302430|ref|XP_001551625.1| hypothetical protein BC1G_09999 [Botryotinia fuckeliana B05.10]
Length = 240
Score = 209 bits (531), Expect = 3e-51, Method: Compositional matrix adjust.
Identities = 119/255 (46%), Positives = 154/255 (60%), Gaps = 56/255 (21%)
Query: 38 ADNDDLLDYEDEE------------NTEQIVADG-----AGDALAKQKEVKGAYVSIHSS 80
A +DL+DY DEE + D +G+A A +K G+YV IHS+
Sbjct: 3 AAEEDLIDYSDEELATTEAPAPAAGANGGVKGDSGNLTVSGNAAAAKK---GSYVGIHST 59
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GFR+FLLKPE+LRAI C F ++++V I
Sbjct: 60 GFREFLLKPELLRAISWCG--------FEHPSEVQQVCI--------------------- 90
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
+A+LG D+LCQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELA+QI EY
Sbjct: 91 ---PQAILGTDVLCQAKSGLGKTAVFVLTTLQQVEVVAGETSVLVMCHTRELAYQIRNEY 147
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLL 257
+RF +M ++K+GVF+GG+PI KD E LK TH P I+VGTPGR+ ALVR+K L L+ +
Sbjct: 148 QRFCHFMPDVKIGVFYGGVPISKDVEVLKNPETH-PHIIVGTPGRLNALVRDKYLRLNSV 206
Query: 258 KHFILDECDKMLEQL 272
K F+LDECDKML+Q+
Sbjct: 207 KVFVLDECDKMLDQI 221
>gi|429964461|gb|ELA46459.1| hypothetical protein VCUG_02054 [Vavraia culicis 'floridensis']
Length = 401
Score = 207 bits (526), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 126/345 (36%), Positives = 183/345 (53%), Gaps = 56/345 (16%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLET-------TDSNVYVLVMCHTRELAFQIS 197
KAVLG DILCQAKSG GKT VFVL+ LQ++ T + V V+ + +T+E+ QI+
Sbjct: 58 KAVLGADILCQAKSGTGKTVVFVLSALQRISREEGEVHDTCARVQVVAIANTKEMVVQIA 117
Query: 198 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
E++RF Y +++ V + FGG+ + D E LK +VVGTPGR+ L+ L++S L
Sbjct: 118 NEFKRFMCY-TDLNVEMVFGGVDVNGDIEKLKGR-VDVVVGTPGRLFDLIVRGALDVSQL 175
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
+ I+DE D +L L R VQ I +P KQ M+F+ATLS E+R C + +P +
Sbjct: 176 RILIIDEVDSILSSLSSRWTVQRIIYKTPVGKQTMLFTATLSDEMRNTCLLMVRNPFVLQ 235
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLD-VLEFNQVVIFVKSVTRCIALSTLLSE 376
VD+E KLTLHGL+Q YV + E+ K KL L+D + + +Q VIF + R L+ L
Sbjct: 236 VDEERKLTLHGLEQGYVNVAEDSKRDKLIGLIDGIRDISQCVIFCRDKRRVEVLAEHLKT 295
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------- 404
+ PAVSI ER++++ FK+
Sbjct: 296 KGLPAVSITSDYDTNERMQRFMSFKNLDYRFLVTTNLMARGIDIAEINLVVNYDMAEDAQ 355
Query: 405 --------------KGLAITFASDENDAKILNNVQDRFDVSISEL 435
+G A++F +E D +LN VQ+RF+VSI E+
Sbjct: 356 TYLHRVGRAGRFETRGTAVSFICNEEDIVVLNEVQERFEVSIKEI 400
Score = 72.4 bits (176), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/48 (62%), Positives = 36/48 (75%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+R LV TNL RG+DI +N+V NYDM ED+ TYLHRV RAGRF T+
Sbjct: 324 YRFLVTTNLMARGIDIAEINLVVNYDMAEDAQTYLHRVGRAGRFETRG 371
>gi|168985568|emb|CAQ10646.1| HLA-B associated transcript 1 [Homo sapiens]
Length = 187
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 118/196 (60%), Positives = 133/196 (67%), Gaps = 37/196 (18%)
Query: 37 MADND---DLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93
MA+ND +LLDYED+E DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LR
Sbjct: 24 MAENDVDNELLDYEDDEVETAAGGDGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLR 81
Query: 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
AIVDC E + V + +P+ A+LGMD+L
Sbjct: 82 AIVDCG--------------FEHPSEVQHECIPQ------------------AILGMDVL 109
Query: 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213
CQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV
Sbjct: 110 CQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVA 169
Query: 214 VFFGGLPIQKDEEYLK 229
VFFGGL I+KDEE LK
Sbjct: 170 VFFGGLSIKKDEEVLK 185
>gi|26354014|dbj|BAC40637.1| unnamed protein product [Mus musculus]
Length = 182
Score = 206 bits (524), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 105/179 (58%), Positives = 125/179 (69%), Gaps = 46/179 (25%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
MEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQVVIFVKSV RC+AL+ L
Sbjct: 1 MEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQL 60
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------- 404
L EQNFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 61 LVEQNFPAIAIHRGMAQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMPE 120
Query: 405 -----------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 121 DSDTYLHRVARAGRFGTKGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 179
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 93 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 140
>gi|402072144|gb|EJT68072.1| hypothetical protein GGTG_14349 [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 221
Score = 204 bits (518), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 104/219 (47%), Positives = 140/219 (63%), Gaps = 47/219 (21%)
Query: 274 MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY 333
MRRDVQEIFR++P KQVMMFSATLS EI+P+CKKFM +P E YVD++ KLTLHGLQQ+Y
Sbjct: 1 MRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVDEDTKLTLHGLQQYY 60
Query: 334 VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393
+ L+E EKN+KL ELLD L+FNQV+IFVKS R L LL E NFP++++H G++QEER
Sbjct: 61 LALEEREKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPSIAVHSGVSQEER 120
Query: 394 LKKYQEFKDFH----------------------------------------------KGL 407
+++Y+EFK+F+ KGL
Sbjct: 121 IRRYKEFKEFNKRICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGL 180
Query: 408 AITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
AI+F +++ D +L ++ RF+V++ E P E ID STY+
Sbjct: 181 AISFVTNDQDKDVLKLIEKRFEVALPEFPKEGIDASTYM 219
Score = 84.3 bits (207), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 133 RICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGL 180
>gi|50949411|emb|CAH10601.1| hypothetical protein [Homo sapiens]
Length = 182
Score = 202 bits (513), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 105/180 (58%), Positives = 125/180 (69%), Gaps = 47/180 (26%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
MEV+VDDE KLTLHGLQQ+YVKLK++EKN+KLF+LLDVLEFNQV+IFVKSV RC+AL+ L
Sbjct: 1 MEVFVDDETKLTLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQL 60
Query: 374 LSEQNFPAVSIHRGMTQEER-LKKYQEFKDFH---------------------------- 404
L EQNFPA++IHRGM QEER L +YQ+FKDF
Sbjct: 61 LVEQNFPAIAIHRGMAQEERSLSRYQQFKDFQRRILVATNLFGRGMDIERVNIVFNYDMP 120
Query: 405 ------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 121 EDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 180
Score = 103 bits (256), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 94 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 141
>gi|353241935|emb|CCA73715.1| probable SUB2-mRNA export protein, member of the DEAD-box RNA
helicase superfamily [Piriformospora indica DSM 11827]
Length = 188
Score = 201 bits (510), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 98/180 (54%), Positives = 135/180 (75%), Gaps = 9/180 (5%)
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD-----PMEVYVDDEAKLT 325
Q +MRRDVQEIFR +PH+KQVMMFSATLSKEIR CKKFM++ P+E+++D E+KLT
Sbjct: 8 QPDMRRDVQEIFRITPHSKQVMMFSATLSKEIRVTCKKFMNNVRILVPLEIFIDGESKLT 67
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
LH LQQ++++L+E +KN+KL +LLD L+FNQVVIFVKSV R + L LL E FP ++H
Sbjct: 68 LHDLQQYFLRLEETQKNRKLNDLLDTLDFNQVVIFVKSVGRAVELDKLLRECGFPGTTVH 127
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
G++QEER + F KGLA+TF S + D +L +Q RF+++I+ +P E+D +TY+
Sbjct: 128 SGLSQEER--RAGRFGT--KGLALTFVSSQADLDVLEQIQSRFEIAITGMPAELDKTTYM 183
>gi|145483885|ref|XP_001427965.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124395048|emb|CAK60567.1| unnamed protein product [Paramecium tetraurelia]
Length = 471
Score = 192 bits (489), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 162/271 (59%), Gaps = 10/271 (3%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T A+LG ++CQAK+G GKTAVFVL L + T + V LV+ HTRELA Q E+ R
Sbjct: 105 TNALLGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFLRL 164
Query: 204 SKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIVVGTPGRILALV-RNKKLNLSLLKHFI 261
K+M ++KV F+ GG P+ + + ++T PQIVVGTPGR+ L+ K L + LK+FI
Sbjct: 165 GKFMKSVKVECFYGGGEPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFI 224
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY--VD 319
LDE D M+E L MR+D+Q+IF SP KQ M FSAT ++ R K+F+ D +Y
Sbjct: 225 LDEADTMIEDLNMRKDIQDIFLKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITI 284
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+L L L+Q+Y+K+ E K L ++L+ + NQ +IFVKS + AL T L ++
Sbjct: 285 KPEQLFLDKLKQYYMKMPEALKFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGE 344
Query: 380 PAVSIHRGMT------QEERLKKYQEFKDFH 404
+V G Q+ R K Y++F++ H
Sbjct: 345 ESVRQLYGGNRLGPDHQKMRQKTYEQFRNGH 375
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+R+LVATNL GRG+DI++VN V N+DMP+ +TYLHRV RAGR T V
Sbjct: 376 FRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQETNGV 424
>gi|145508319|ref|XP_001440109.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407315|emb|CAK72712.1| unnamed protein product [Paramecium tetraurelia]
Length = 424
Score = 191 bits (486), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 161/271 (59%), Gaps = 10/271 (3%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T A+LG ++CQAK+G GKTAVFVL L + + V LV+ HTRELA Q E+ R
Sbjct: 58 TNALLGEQLICQAKAGTGKTAVFVLTVLNTINIDSNKVECLVITHTRELAQQARDEFLRL 117
Query: 204 SKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIVVGTPGRILALV-RNKKLNLSLLKHFI 261
K+M N+KV F+ GG P+ + + ++T PQIVVGTPGR+ L+ K L + LK+FI
Sbjct: 118 GKFMKNVKVECFYGGGEPVSVNIQTIETVKPQIVVGTPGRLKDLICERKALKVDRLKYFI 177
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY--VD 319
LDE D M+E L MR+D+Q+IF SP KQ M FSAT ++ R K+F+ D +Y
Sbjct: 178 LDEADTMIEDLNMRKDIQDIFFKSPQEKQFMAFSATFTESSRTSLKRFIADNKHIYEITI 237
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+L L L+Q+Y+K+ E K L ++L+ + NQ +IFVKS + AL T L ++
Sbjct: 238 KPEQLFLDKLKQYYMKVPEALKFHYLRQILNTCKLNQCIIFVKSSEKADALVTELKKKGE 297
Query: 380 PAVSIHRGMT------QEERLKKYQEFKDFH 404
+V G Q+ R K Y++F++ H
Sbjct: 298 ESVRQLYGGNRLGPDHQKMRQKTYEQFRNGH 328
Score = 72.8 bits (177), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 45/64 (70%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158
+R+LVATNL GRG+DI++VN V N+DMP+ +TYLHRV RAGR T V + + +S
Sbjct: 329 FRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQETNGVAISFVKSEEES 388
Query: 159 GMGK 162
GK
Sbjct: 389 NDGK 392
>gi|312082166|ref|XP_003143332.1| ATP-dependent RNA helicase WM6 [Loa loa]
Length = 500
Score = 191 bits (484), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 107/200 (53%), Positives = 120/200 (60%), Gaps = 69/200 (34%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ----------------- 356
MEVYVDDEAKLTLHGLQQHYVKLKE EKNKKL ELLD LEFNQ
Sbjct: 1 MEVYVDDEAKLTLHGLQQHYVKLKETEKNKKLLELLDQLEFNQKQIVYILSQKRFLMLYP 60
Query: 357 ------VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------ 404
VVIFV+SV RC AL TLLSEQNFP+++IHRGM QEERL +YQ+FKDF
Sbjct: 61 RLKALKVVIFVRSVQRCGALHTLLSEQNFPSIAIHRGMPQEERLSRYQQFKDFQKRILVA 120
Query: 405 ----------------------------------------KGLAITFASDENDAKILNNV 424
KGLAITF SDENDAKILN+V
Sbjct: 121 TNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDV 180
Query: 425 QDRFDVSISELPDEIDLSTY 444
QDRFDV+++ELP EI+++TY
Sbjct: 181 QDRFDVNVTELPAEIEVATY 200
Score = 103 bits (256), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 116 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 163
>gi|145548271|ref|XP_001459816.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124427643|emb|CAK92419.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 189 bits (480), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 113/271 (41%), Positives = 159/271 (58%), Gaps = 10/271 (3%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T A+ G ++CQAK+G GKTAVFVL L + T + V LV+ HTRELA Q E+ R
Sbjct: 63 TNALQGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRELAQQARDEFLRL 122
Query: 204 SKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIVVGTPGRILALV-RNKKLNLSLLKHFI 261
K+M NIKV F+ GG P+ + ++T PQI+VGTPGR+ L+ K L + LK+FI
Sbjct: 123 GKFMKNIKVECFYGGGEPVTVNISTIETVKPQIIVGTPGRLKDLICERKALKVDRLKYFI 182
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY--VD 319
LDE D M+E L MR+D+Q+IF SP KQ M FSAT ++ R KKF+ D +Y
Sbjct: 183 LDEADTMIEDLNMRKDIQDIFLRSPQEKQFMAFSATFTESSRTSLKKFIADNKHIYEITI 242
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+L L L+Q+Y+K+ E K L ++L+ + NQ +IFVKS + AL L ++
Sbjct: 243 KPEQLFLDKLKQYYMKVPETLKFHYLRQILNTCKLNQCIIFVKSSEKADALVAELKKKGE 302
Query: 380 PAVSIHRGMT------QEERLKKYQEFKDFH 404
+V G Q+ R K Y++F++ H
Sbjct: 303 DSVRQLYGGNRLGPDHQKLRQKTYEQFRNGH 333
Score = 72.8 bits (177), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+R+LVATNL GRG+DI++VN V N+DMP+ +TYLHRV RAGR T V
Sbjct: 334 FRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQETNGV 382
>gi|145520549|ref|XP_001446130.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124413607|emb|CAK78733.1| unnamed protein product [Paramecium tetraurelia]
Length = 429
Score = 188 bits (477), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 124/341 (36%), Positives = 179/341 (52%), Gaps = 42/341 (12%)
Query: 74 YVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYL 133
Y + + S F++F LK E+LRA+ + +
Sbjct: 25 YDNYNVSQFKNFGLKEELLRAVKEAG--------------------------------FE 52
Query: 134 HRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
H T A+ G ++CQAK+G GKTAVFVL L + T + V LV+ HTRELA
Sbjct: 53 HPTRVQAESLTNALQGEQLICQAKAGTGKTAVFVLTVLNTINTESNKVECLVITHTRELA 112
Query: 194 FQISKEYERFSKYMSNIKVGVFF-GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK- 251
Q E+ R K+M +IKV F+ GG P+ + ++T PQIVVGTPGR+ L+ KK
Sbjct: 113 QQARDEFLRLGKFMKSIKVECFYGGGEPVTVNISTIETVKPQIVVGTPGRLKDLICEKKA 172
Query: 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311
L + LK+FILDE D M+E L MR+D+Q+IF +P KQ M FSAT ++ R KKF+
Sbjct: 173 LKVDRLKYFILDEADTMIEDLNMRKDIQDIFLRTPQDKQFMAFSATFTESSRTSLKKFIA 232
Query: 312 DPMEVY--VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIA 369
D +Y +L L L+Q+Y+K+ E K L ++L+ + NQ +IFVKS + A
Sbjct: 233 DNKHIYEITIKPEQLFLDKLKQYYLKVPETLKFHYLRQILNTCKLNQCIIFVKSSEKADA 292
Query: 370 LSTLLSEQNFPAVSIHRGMT------QEERLKKYQEFKDFH 404
L L ++ +V G Q+ R K Y++F++ H
Sbjct: 293 LVAELKKKGEDSVRQLYGGNRLGPDHQKMRQKTYEQFRNGH 333
Score = 72.4 bits (176), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+R+LVATNL GRG+DI++VN V N+DMP+ +TYLHRV RAGR T V
Sbjct: 334 FRLLVATNLMGRGIDIDKVNYVINFDMPDSLETYLHRVGRAGRQETNGV 382
>gi|340500508|gb|EGR27377.1| hypothetical protein IMG5_196470 [Ichthyophthirius multifiliis]
Length = 401
Score = 181 bits (458), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 129/381 (33%), Positives = 187/381 (49%), Gaps = 72/381 (18%)
Query: 119 IVFNYDMPED---SDTYLHRVARAG---------RFGTKAVLGMDILCQAKSGMGKTAVF 166
IV NY D ++ L + AG + KA+ G DILCQAK+G GKTAVF
Sbjct: 28 IVINYSTFNDFNLNEDLLRSIKEAGLITPFEVQQKCIPKAIFGTDILCQAKAGTGKTAVF 87
Query: 167 VLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226
V++ L QL LV+CHTRE A+ I E++R K+ + K FGG+ + D
Sbjct: 88 VISVLNQLSDNSPPFSCLVLCHTRESAYYIKNEFKRLGKF-TIFKTETVFGGVQEKIDAV 146
Query: 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSL-LKHFILDECDKMLEQLEMRRDVQEIFRSS 285
LK P I+V TPG+ +L++ K+L ++ +KHFI+DECDK++E L+MR+ V++IF
Sbjct: 147 KLKNEQPHILVTTPGKFQSLLKQKELIKTINVKHFIVDECDKVMECLKMRKVVKKIFMQL 206
Query: 286 PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKL 345
P KQVMMFS T+ E + ++V ++D K L GL Q+Y+K+ E K L
Sbjct: 207 PLQKQVMMFSGTICIE---------NKYIQVIIEDNYKQELVGLDQYYLKVDEKLKISML 257
Query: 346 FELLDVLEFNQVVIFVKSVTRCIALST-LLSEQNFPAVSIHRGMTQEERLKKYQEF---- 400
+ L FNQV+IFV R +S LL +Q + I R ++R + Y EF
Sbjct: 258 IQFLTQFSFNQVIIFVNKFERAECVSKYLLEKQKIESQVICRTFELDKRNQIYTEFIQGK 317
Query: 401 -------------------------------KDF-----------HKGLAITFASDENDA 418
D+ KG+ I+F S + D
Sbjct: 318 KRVLVATDLFARSSYIERIKLVINFDMPEKYDDYMHRVGKASTQQTKGMIISFVSTKEDD 377
Query: 419 KILNNVQDRFDVSISE--LPD 437
+L ++Q+ F ISE LP+
Sbjct: 378 YVLKDIQNSFQTKISEYNLPN 398
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 34/49 (69%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
R+LVAT+LF R IER+ +V N+DMPE D Y+HRV +A TK ++
Sbjct: 319 RVLVATDLFARSSYIERIKLVINFDMPEKYDDYMHRVGKASTQQTKGMI 367
>gi|356562030|ref|XP_003549278.1| PREDICTED: LOW QUALITY PROTEIN: DEAD-box ATP-dependent RNA helicase
56-like [Glycine max]
Length = 237
Score = 180 bits (457), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 91/162 (56%), Positives = 115/162 (70%), Gaps = 3/162 (1%)
Query: 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGV 214
Q KSGMGK VFVL TL Q++ Y L +CHTRELA+QI E+ERF Y++++KVG
Sbjct: 68 QEKSGMGKMIVFVLXTLXQIDPVARQDYALXLCHTRELAYQICHEFERFRTYLTDLKVGF 127
Query: 215 FF--GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272
FF G+ I+ + +K P IVVGTPGRIL L R+K L+L ++H ILDECDKMLE L
Sbjct: 128 FFFYDGIKIKSSQGSIKNECPNIVVGTPGRILGLARDKDLSLKNVRHCILDECDKMLESL 187
Query: 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314
+ R+DVQ+IF + H KQVMMFS T++KEIR + KKFM D M
Sbjct: 188 DKRKDVQQIFMTH-HAKQVMMFSTTINKEIRLIWKKFMQDGM 228
>gi|194381412|dbj|BAG58660.1| unnamed protein product [Homo sapiens]
gi|221046326|dbj|BAH14840.1| unnamed protein product [Homo sapiens]
Length = 212
Score = 179 bits (453), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 90/133 (67%), Positives = 100/133 (75%), Gaps = 6/133 (4%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNI------KVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
M + LAF S + S +S + KV VFFGGL I+KDEE LK + P IVVGT
Sbjct: 35 MSPSTALAFVTSCSSQSCSGPLSTVALSIRQKVAVFFGGLSIKKDEEVLKKNCPHIVVGT 94
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLS
Sbjct: 95 PGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLS 154
Query: 300 KEIRPVCKKFMHD 312
KEIRPVC+KFM D
Sbjct: 155 KEIRPVCRKFMQD 167
>gi|156848475|ref|XP_001647119.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
70294]
gi|160385736|sp|A7TEF4.1|FAL1_VANPO RecName: Full=ATP-dependent RNA helicase FAL1
gi|156117803|gb|EDO19261.1| hypothetical protein Kpol_1036p3 [Vanderwaltozyma polyspora DSM
70294]
Length = 399
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 100/276 (36%), Positives = 159/276 (57%), Gaps = 4/276 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ ++ ++ LV+ TRELA QI
Sbjct: 48 AIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQAIDLKRKDLQALVLSPTRELASQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
++ YM N++ GG ++ D ++ + Q+V GTPGR+L + + LN
Sbjct: 108 NQVVSNLGDYM-NVQSYAMTGGKTMKDDLNRMQKNGCQVVSGTPGRVLDMFKRHLLNTRN 166
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
++ ILDE D++L E L ++ + +IF P QV++ SAT+SK+I V KKFM DP++
Sbjct: 167 VQMLILDEADELLGESLGFKQQIYDIFTKLPAACQVVVVSATMSKDILEVTKKFMSDPVK 226
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + +++L G++Q+YV + KE+ K L +L D L Q VIF + + LS L
Sbjct: 227 ILVKRD-EISLEGIKQYYVNVEKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSAKL 285
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
++ NF VS+H M QE+R K +F+ H + I+
Sbjct: 286 TQSNFAVVSMHGDMKQEDRNKVMSDFRSGHSRVLIS 321
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDIPEIMENYIHRIGRSGRFGRKGV 364
>gi|344258953|gb|EGW15057.1| Spliceosome RNA helicase BAT1 [Cricetulus griseus]
Length = 155
Score = 170 bits (430), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 91/154 (59%), Positives = 113/154 (73%), Gaps = 7/154 (4%)
Query: 285 SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKK 344
+PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YVKLK+NEKN+K
Sbjct: 2 TPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRK 61
Query: 345 LFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA----VSIHRGMTQEERLKKYQEF 400
LF+LLDVLEFNQ K R I ++T L + ++ + M ++ ++
Sbjct: 62 LFDLLDVLEFNQQ---FKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVA 118
Query: 401 KDFHKGLAITFASDENDAKILNNVQDRFDVSISE 434
+ K LAITF SDENDAKILN+VQDRF+V+I E
Sbjct: 119 RAGTKCLAITFVSDENDAKILNDVQDRFEVNIIE 152
Score = 89.7 bits (221), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 40/41 (97%), Positives = 40/41 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAG
Sbjct: 81 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAG 121
>gi|51317205|gb|AAT99858.1| unknown [Diachasmimorpha longicaudata entomopoxvirus]
Length = 379
Score = 170 bits (430), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 96/260 (36%), Positives = 159/260 (61%), Gaps = 9/260 (3%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA+SG GKTA + ++ LQQ++T++SN+ L++ TRELA Q + +
Sbjct: 40 CISGKDVIVQAQSGTGKTATYAISVLQQIDTSNSNIQALILTPTRELALQAQRVLQTIGN 99
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y+ N K V GG I++ +E LK Q+++GTPGR++ L+ K ++ +K ++DE
Sbjct: 100 YLYNFKCQVCIGGTSIKESQETLK--KAQVLIGTPGRMIDLLTRKSIDTKAIKIVVIDEA 157
Query: 266 DKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
D+ML L+ +D+ E F S H QV++ SAT+ + + FM DP+++ V + A+
Sbjct: 158 DEMLIDNFLDKIQDIFEFFES--HV-QVILLSATVPSRVINTSQVFMRDPVKILVKN-AE 213
Query: 324 LTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
LTL G++Q+Y+ +K+N+ K + LF+L D L Q +IF + + L L+ +NF A
Sbjct: 214 LTLEGIRQYYINVKKNDFKAETLFDLYDHLSLTQTLIFCNTRRQVDVLMECLTNRNFTAS 273
Query: 383 SIHRGMTQEERLKKYQEFKD 402
SIH M+Q+ER +EF+D
Sbjct: 274 SIHGDMSQQERDFIMKEFRD 293
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL++TNL RG+D++++++V NYD+P + + Y+HR+ R+GRFG K +
Sbjct: 297 RILLSTNLLARGIDVQQISLVINYDLPHNRENYIHRIGRSGRFGRKGI 344
>gi|366988431|ref|XP_003673982.1| hypothetical protein NCAS_0A10430 [Naumovozyma castellii CBS 4309]
gi|342299845|emb|CCC67601.1| hypothetical protein NCAS_0A10430 [Naumovozyma castellii CBS 4309]
Length = 399
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 98/272 (36%), Positives = 159/272 (58%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G DI+ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI++
Sbjct: 52 RAITRIISGSDIIAQAQSGTGKTATFAIGMLQIIDLKKKDLQALILSPTRELAVQINQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+K GG ++ D + + Q+V GTPGR+L +++ + L + ++
Sbjct: 112 SNLGDYM-NVKSLAMTGGKMMKDDLKKVSKSGCQVVSGTPGRVLDMIKRQLLAIRNIQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P + QV++ SAT+SK+I V KKFM DP+++ V
Sbjct: 171 VLDEADELLGESLGFKQQIYDIFAKLPKSCQVVVVSATMSKDIIEVTKKFMSDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+YV + KE K L ++ D L Q VIF + + LS L++ N
Sbjct: 231 QD-EISLEGIKQYYVDVGKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSAKLTQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 68.6 bits (166), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE+ + Y+HR+ R+GRFG K +
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRFGRKGI 364
>gi|373465275|ref|ZP_09556749.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus kisonensis
F0435]
gi|371760939|gb|EHO49597.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus kisonensis
F0435]
Length = 508
Score = 169 bits (427), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 102/290 (35%), Positives = 163/290 (56%), Gaps = 7/290 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ+++ + NV L++ TRELA Q +E R K
Sbjct: 38 GQDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISPTRELAIQTQEEIYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+V V +GG I++ LK H PQI+VGTPGR+L +R L L +K +LDE D+M
Sbjct: 97 KARVQVVYGGADIRRQINSLKDH-PQIIVGTPGRLLDHIRRHTLKLEHIKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 LD-MGFLDDIESIIKQTPEERQTLLFSATMPAQIKRVGVQFMKDPQQVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+LKE EK + DV + +++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRLKEYEKFDTMTRFFDVQDPEVILVFCRTKRRVDEVSKGLEARGYKAAGLHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
TQ R + QEFK H + I A+D I ++ V ++ I + PD
Sbjct: 274 TQARRSQIMQEFK--HGKIDILVATDVAARGIDISGVTHVYNYDIPQDPD 321
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGV 338
>gi|406668916|ref|ZP_11076207.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
gi|405585197|gb|EKB59032.1| hypothetical protein HMPREF9707_00110 [Facklamia ignava CCUG 37419]
Length = 547
Score = 167 bits (424), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 152/257 (59%), Gaps = 3/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F + L+ L+ ++ + L++ TRELA Q+ +E R+ K
Sbjct: 35 ALTGDDLIGQAQTGTGKTAAFGIPMLEHLDLSNRTIQGLIIAPTRELAIQVQEELYRYGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ KV +GG PI K E LK +NPQI+VGTPGRIL L+ L+ S L+ +LDE
Sbjct: 95 LLK-AKVYSVYGGTPIGKQIERLKRYNPQIIVGTPGRILDLMNRNVLDFSQLEQLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I R++P ++Q M+FSAT+ EI+ + ++F+ P V ++ + ++T
Sbjct: 154 DEMLN-MGFIEDIRAIIRATPDSRQTMLFSATMPSEIKALAEEFLRHPQHVQIEAQ-QMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q++ K + EK L +D+ Q +IF ++ R + L+ + + A IH
Sbjct: 212 ADLIDQYFTKCSDGEKFDILTRFIDIHNPKQAIIFCRTKKRVDEVGRGLALRGYNAEMIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ++R +E KD
Sbjct: 272 GDITQQKRTSVIKELKD 288
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/74 (41%), Positives = 45/74 (60%), Gaps = 8/74 (10%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I + M
Sbjct: 293 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMSITFVTHNEM 349
Query: 161 GKTAVFVLATLQQL 174
L T++QL
Sbjct: 350 A-----YLKTIEQL 358
>gi|50294444|ref|XP_449633.1| hypothetical protein [Candida glabrata CBS 138]
gi|74661035|sp|Q6FJG1.1|FAL1_CANGA RecName: Full=ATP-dependent RNA helicase FAL1
gi|49528947|emb|CAG62609.1| unnamed protein product [Candida glabrata]
Length = 399
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 154/267 (57%), Gaps = 4/267 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ ++ ++ LV+ TRELA QI
Sbjct: 48 AIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKKHDLQALVLSPTRELAAQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
K YM N+K GG ++ D + ++ H Q++ GTPGR+L +++ + +
Sbjct: 108 GKVVTNLGDYM-NVKAYAMTGGKTMKDDLKKIQKHGCQVISGTPGRVLDMIKRRLIETRH 166
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
++ +LDE D++L + L + + +IF P T QV++ SAT+S EI + KKFM+DP++
Sbjct: 167 VQILVLDEADELLSDTLGFKHQIYDIFTKLPRTSQVVVVSATMSPEILEITKKFMNDPVK 226
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + ++TL G++Q+YV + KE K L ++ D L Q VIF S + L+ L
Sbjct: 227 ILVKRD-EITLEGIKQYYVNVEKEEWKFDTLCDIYDSLTITQCVIFCNSKKKVDWLAHKL 285
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFK 401
+ NF +S+H M Q+ER + EF+
Sbjct: 286 KQSNFAVISMHGDMKQDERDRVMNEFR 312
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE ++ Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEITENYVHRIGRSGRFGRKGV 364
>gi|338210794|ref|YP_004654843.1| DEAD/DEAH box helicase [Runella slithyformis DSM 19594]
gi|336304609|gb|AEI47711.1| DEAD/DEAH box helicase domain protein [Runella slithyformis DSM
19594]
Length = 570
Score = 167 bits (423), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 153/267 (57%), Gaps = 7/267 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA++G GKTA F + L++++ +D VL++C TRELA Q+++E R +KY
Sbjct: 40 GRDVLGQAQTGTGKTAAFGIPALEKVDISDKRTQVLMLCPTRELAVQVTEELRRIAKYKK 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+K+ +GG I++ LK QIVVGTPGR++ L+ K L L + + +LDE D+M
Sbjct: 100 GLKLETVYGGDSIERQIRSLKI-GAQIVVGTPGRVMDLIERKALKLDFVNYVVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D+ I S P +Q ++FSAT+SK I + +KF DP+++ + ++T
Sbjct: 159 LD-MGFREDIDTILESVPDERQTVLFSATMSKPIMGIAQKFQEDPVQIKI-TRKEVTNEN 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y ++K+ K + +LD + QV+IF + + ++ LS + + S+H +
Sbjct: 217 IEQTYFEVKQRGKIEVTCRVLDAYDLKQVIIFCNTKRKVDEVTEELSSKGYSVESLHGDL 276
Query: 389 TQEERLKKYQEFKDFHKGLA-ITFASD 414
Q +R Q F G A I A+D
Sbjct: 277 RQTQR---NQVMAKFRSGAANILVATD 300
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 31/43 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D+ ++ V N+D+P D + Y+HR+ R GR G
Sbjct: 295 ILVATDVAARGIDVSGIDAVINFDLPLDEEYYVHRIGRTGRAG 337
>gi|256089106|ref|XP_002580657.1| DEAD box ATP-dependent RNA helicase [Schistosoma mansoni]
gi|350645788|emb|CCD59550.1| DEAD box ATP-dependent RNA helicase, putative [Schistosoma mansoni]
Length = 392
Score = 166 bits (421), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 106/322 (32%), Positives = 166/322 (51%), Gaps = 37/322 (11%)
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GF LKPE+LR I +G G Y+ P A
Sbjct: 20 GFEKLDLKPELLRGI------------YGYG-----------YEKPS---------AIQQ 47
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R ++ G D++ QA+SG GKTA F ++ LQ+++ + + LV+ TRELA QI
Sbjct: 48 RAIKPSIEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQALVLVPTRELARQIQTVV 107
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+R Y+ +K GG +D L+ +VVGTPGR+ ++ L + +K F
Sbjct: 108 QRIGSYLC-VKCYTCIGGTRTSQDMACLQ-QGQHVVVGTPGRVFDMMNRNTLATANIKIF 165
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D+ML++ ++EI+R P T Q+M+ SAT+ K I + + MHDP+++ +
Sbjct: 166 VLDEADQMLDR-GFEPQIKEIYRFLPETAQIMLLSATMPKSILSIARSIMHDPVQILIKK 224
Query: 321 EAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
E +LTL G++Q Y+ + KE+ K + L +L ++ +QVVIFV SV + + L + F
Sbjct: 225 E-ELTLDGIKQFYINVSKEDYKLETLMDLYGIMNLSQVVIFVNSVNKSTHICNELKLKKF 283
Query: 380 PAVSIHRGMTQEERLKKYQEFK 401
IH M QE+R +EF+
Sbjct: 284 QVSCIHSDMDQEKRDAVMEEFR 305
Score = 47.4 bits (111), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 32/38 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P + +TY+HR+
Sbjct: 310 RILLSTDILARGIDVQQVSLVVNYDLPSNRETYIHRIG 347
>gi|331701930|ref|YP_004398889.1| DEAD/DEAH box helicase [Lactobacillus buchneri NRRL B-30929]
gi|329129273|gb|AEB73826.1| DEAD/DEAH box helicase domain protein [Lactobacillus buchneri NRRL
B-30929]
Length = 506
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 146/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ+++ + NV L++ TRELA Q +E R K
Sbjct: 38 GEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISPTRELAIQTQEEIYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK H PQIVVGTPGRIL +R L L +K +LDE D+M
Sbjct: 97 KAKVQVVYGGADIRRQINALKGH-PQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 L-NMGFLDDIEDIIKQTPKERQTLLFSATMPAQIKRVGVQFMRDPHQVTIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++KE EK + DV + ++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ R + QEFK
Sbjct: 274 TQARRTQIMQEFK 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGV 338
>gi|406027401|ref|YP_006726233.1| DEAD/DEAH box helicase [Lactobacillus buchneri CD034]
gi|405125890|gb|AFS00651.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus buchneri
CD034]
Length = 506
Score = 166 bits (420), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 95/253 (37%), Positives = 146/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ+++ + NV L++ TRELA Q +E R K
Sbjct: 38 GEDVIGQAQTGTGKTAAFGLPILQKIDFDNPNVQALIISPTRELAIQTQEEIYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK H PQIVVGTPGRIL +R L L +K +LDE D+M
Sbjct: 97 KAKVQVVYGGADIRRQINALKGH-PQIVVGTPGRILDHIRRHTLKLEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 L-NMGFLDDIEDIIKQTPKERQTLLFSATMPAQIKRVGVQFMRDPHQVTIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++KE EK + DV + ++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTKRRVDEVSKGLQARGYKAAGLHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ R + QEFK
Sbjct: 274 TQARRTQIMQEFK 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGV 338
>gi|377809005|ref|YP_005004226.1| DEAD/DEAH box helicase [Pediococcus claussenii ATCC BAA-344]
gi|361055746|gb|AEV94550.1| DEAD/DEAH box helicase family protein [Pediococcus claussenii ATCC
BAA-344]
Length = 518
Score = 166 bits (419), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 152/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQHVDLNNPNIQAIIVSPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + K + L + +LDE D M
Sbjct: 97 KAKVQVVYGGADIRRQINSLKSH-PQIVVGTPGRLLDHIGRKTIRLDHVNTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I +P+ +Q ++FSAT+ + I+ + KFMHDP +V V + +LT
Sbjct: 156 LD-MGFLPDIEQIIEKTPNDRQTLLFSATMPQAIKKIGVKFMHDPKQVTVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ KE EK L +LDV VIF ++ R +S L + + A IH +
Sbjct: 214 VDQYYVRSKEFEKFDILTRVLDVQAPKLAVIFGRTKRRVDEVSKGLVARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ +F++ L I A+D
Sbjct: 274 TQQRRMSILHQFRNGD--LDILVATD 297
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDITGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|417974638|ref|ZP_12615445.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
gi|346328982|gb|EGX97294.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 25644]
Length = 497
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA++G GKTA F L LQ ++ + ++ +V+ TRELA Q +E R K
Sbjct: 38 GIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQAIVVSPTRELAIQTQEELYRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + LK H PQI+VGTPGR+L + K ++LS +K +LDE D+M
Sbjct: 97 RAKVQVVYGGADIRRQIKLLK-HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I ++ P +Q ++FSAT+ K IR + +KFMH+P V + + +LT
Sbjct: 156 LD-MGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK +E EK + +LDV ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYFVKAREYEKFDIMTRILDVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 274 TQQRRMNILKKFKEGR--LDILVATD 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|347534130|ref|YP_004840800.1| DEAD/DEAH box helicase [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504186|gb|AEN98868.1| DEAD-box ATP-dependent RNA helicase cshA [Lactobacillus
sanfranciscensis TMW 1.1304]
Length = 505
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 92/253 (36%), Positives = 147/253 (58%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ ++ D NV LV+ TRELA Q KE ++ +
Sbjct: 52 GEDVIGQAQTGTGKTAAFALPILQGIDVNDPNVQALVISPTRELAIQTQKEIQKLGR-GE 110
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V +GG I+K LK PQI+VGTPGR+L ++ + L L +K +LDE D+M
Sbjct: 111 GVRAQVVYGGSDIRKQIYDLK-KKPQIIVGTPGRLLDHIKRRTLKLEHVKFLVLDEADEM 169
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I +++P +Q M+FSAT+ I+ V +FM DP ++ V + +LT
Sbjct: 170 L-NMGFLEDIESIIKNTPSDRQTMLFSATMPDPIKRVGVQFMTDPKQIKVKSK-ELTTDL 227
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YVK+K+NEK + + L DV + ++F ++ R ++ L + + A +H +
Sbjct: 228 VDQYYVKVKDNEKFETMTRLFDVEQPKVTIVFCRTKRRVDEVAKGLIARGYKAAGLHGDL 287
Query: 389 TQEERLKKYQEFK 401
TQ R + EFK
Sbjct: 288 TQSRRTQIMNEFK 300
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D LVAT++ RG+D+ V V+N+D+P+D ++Y+HR+ R GR G
Sbjct: 302 DQINYLVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGRAG 348
>gi|323340095|ref|ZP_08080360.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
gi|323092472|gb|EFZ35079.1| ATP-dependent RNA helicase DeaD [Lactobacillus ruminis ATCC 25644]
Length = 506
Score = 165 bits (417), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA++G GKTA F L LQ ++ + ++ +V+ TRELA Q +E R K
Sbjct: 47 GIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQAIVVSPTRELAIQTQEELYRLGKD-K 105
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + LK H PQI+VGTPGR+L + K ++LS +K +LDE D+M
Sbjct: 106 RAKVQVVYGGADIRRQIKLLK-HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEM 164
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I ++ P +Q ++FSAT+ K IR + +KFMH+P V + + +LT
Sbjct: 165 LD-MGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVKIKAK-ELTTDL 222
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK +E EK + +LDV ++F ++ R LS L + + A IH +
Sbjct: 223 VDQYFVKAREYEKFDIMTRILDVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDL 282
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 283 TQQRRMNILKKFKEGR--LDILVATD 306
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G +
Sbjct: 301 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGI 347
>gi|335998488|ref|ZP_08564399.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
gi|335348343|gb|EGM49849.1| ATP-dependent RNA helicase [Lactobacillus ruminis SPM0211]
Length = 506
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA++G GKTA F L LQ ++ + ++ +V+ TRELA Q +E R K
Sbjct: 47 GIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQAIVVSPTRELAIQTQEELYRLGKD-K 105
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + LK H PQI+VGTPGR+L + K ++LS +K +LDE D+M
Sbjct: 106 RAKVQVVYGGADIRRQIKLLK-HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEM 164
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I ++ P +Q ++FSAT+ K IR + +KFMH+P V + + +LT
Sbjct: 165 LD-MGFLEDIEAIIKNVPEERQTLLFSATMPKAIRSIGEKFMHEPQVVNIKAK-ELTTDL 222
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK +E EK + +LDV ++F ++ R LS L + + A IH +
Sbjct: 223 VDQYFVKAREYEKFDIMTRILDVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDL 282
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 283 TQQRRMNILKKFKEGR--LDILVATD 306
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G +
Sbjct: 301 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGI 347
>gi|347524843|ref|YP_004831591.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
gi|345283802|gb|AEN77655.1| ATP-dependent RNA helicase [Lactobacillus ruminis ATCC 27782]
Length = 497
Score = 164 bits (416), Expect = 6e-38, Method: Compositional matrix adjust.
Identities = 97/266 (36%), Positives = 157/266 (59%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA++G GKTA F L LQ ++ + ++ +V+ TRELA Q +E R K
Sbjct: 38 GIDVIGQAQTGTGKTAAFGLPILQHVDVKEEHIQAIVISPTRELAIQTQEELYRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + LK H PQI+VGTPGR+L + K ++LS +K +LDE D+M
Sbjct: 97 RAKVQVVYGGADIRRQIKLLK-HVPQILVGTPGRLLDHINRKTVDLSHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I ++ P +Q ++FSAT+ K IR + +KFMH+P V + + +LT
Sbjct: 156 LD-MGFLEDIEAIIKNVPEERQTLLFSATMPKTIRSIGEKFMHEPQVVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK +E EK + +LDV ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYFVKAREYEKFDIMTRILDVQAPELTIVFGRTKRRVDELSKGLEARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 274 TQQRRMNILKKFKEGR--LDILVATD 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|365903699|ref|ZP_09441522.1| ATP-dependent RNA helicase [Lactobacillus malefermentans KCTC 3548]
Length = 541
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 103/290 (35%), Positives = 163/290 (56%), Gaps = 7/290 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L L++++ + + LV+ TRELA Q +E R K
Sbjct: 38 GKDIIGQAQTGTGKTAAFSLPILEKVDLHNPQIQALVVSPTRELAIQTQEEIFRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ KV V +GG I++ LK+H PQI+VGTPGR+L +R + L +K +LDE D+M
Sbjct: 97 HAKVQVVYGGADIRRQINSLKSH-PQIIVGTPGRLLDHIRRGTVKLDHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + P +Q ++FSAT+ EI+ V +FM DP V + +LT
Sbjct: 156 L-NMGFLDDIEDIIKQLPEDRQTLLFSATMPPEIKRVGVQFMTDPQHVKI-KAKELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YVK+K+ EK + L DV + ++F ++ R L++ L + + A IH +
Sbjct: 214 VDQYYVKVKDFEKFDVMTRLFDVQSPDLTLVFTRTKRRVDELTSGLQARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
TQ+ R++ EFK L I A+D I +NN+ ++ I + PD
Sbjct: 274 TQKRRMQILNEFKTGK--LDILVATDVAARGIDVNNITHVYNFDIPQDPD 321
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D+ + V+N+D+P+D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGIDVNNITHVYNFDIPQDPDSYVHRIGRTGRAGHHGV 338
>gi|339449340|ref|ZP_08652896.1| DEAD/DEAH box helicase domain-containing protein [Lactobacillus
fructivorans KCTC 3543]
Length = 496
Score = 164 bits (414), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ+++ + +V LV+ TRELA Q KE +R +
Sbjct: 38 GQDVIGQAQTGTGKTAAFALPILQEIDLNNPDVQALVISPTRELAIQTQKEMQRLGG-VE 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+V V +GG I++ LK PQIVVGTPGRIL + + L L +K+ +LDE D+M
Sbjct: 97 GARVQVVYGGSDIRQQIRDLK-KTPQIVVGTPGRILDHINRRTLKLGHVKYLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I ++ P +Q ++FSAT+ I+ V +FM DP ++ V + +LT
Sbjct: 156 L-NMGFLDDIESIIKNIPSDRQTLLFSATMPAPIKRVGVQFMRDPKQITVKSK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YVK+K+NEK + L DV ++F ++ R +S L + + A +H +
Sbjct: 214 VDQYYVKVKDNEKFDTMTRLFDVQTPKVTIVFCRTKRRVDEVSKGLIARGYRAAGLHGDL 273
Query: 389 TQEERLKKYQEFKD 402
TQ+ R + EFK+
Sbjct: 274 TQKRRTQIMNEFKN 287
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D LVAT++ RG+D+ V V+N+D+P+D ++Y+HR+ R GR G
Sbjct: 288 DKINYLVATDVAARGIDVSGVTYVYNFDIPQDPESYVHRIGRTGRAG 334
>gi|310659566|ref|YP_003937287.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
gi|308826344|emb|CBH22382.1| ATP-dependent RNA helicase; cold shock [[Clostridium] sticklandii]
Length = 515
Score = 163 bits (413), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 96/256 (37%), Positives = 147/256 (57%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G+D++ QA++G GKTA F + L ++E + V L++ TRELA Q+S+E R +K
Sbjct: 36 AMQGIDLIGQAQTGTGKTAAFGIPLLSKIEKGNKAVQALILAPTRELALQVSQEINRLAK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y N++ +GG I K LK NPQIVV TPGR + +R +NL+ ++ ILDE
Sbjct: 96 Y-KNVEAIAIYGGEDIGKQIRGLK-KNPQIVVATPGRFMDHMRRNTINLANIQTVILDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ K I+ V +KFM P V V ++ +T
Sbjct: 154 DEMLS-MGFIEDIETILQEVPSERQTLLFSATMPKRIQSVSQKFMKSPQTVAVKNKT-MT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ ++Q Y+ LKE +K L L+D+ +IF ++ R LS LS + + IH
Sbjct: 212 VDTIEQRYLDLKERDKFDALCRLMDIHCPELSIIFGRTKRRVDELSEALSIRGYDVEGIH 271
Query: 386 RGMTQEERLKKYQEFK 401
M QE R K + FK
Sbjct: 272 GDMKQERREKVLRRFK 287
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+ILVAT++ RG+DI V+ VFN+D+P+D ++Y+HR+ R GR G K +
Sbjct: 292 KILVATDVAARGLDISGVSHVFNFDLPQDPESYVHRIGRTGRAGQKGI 339
>gi|365982301|ref|XP_003667984.1| hypothetical protein NDAI_0A05860 [Naumovozyma dairenensis CBS 421]
gi|343766750|emb|CCD22741.1| hypothetical protein NDAI_0A05860 [Naumovozyma dairenensis CBS 421]
Length = 399
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 93/272 (34%), Positives = 161/272 (59%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ +++ + L++ TRELA QI++
Sbjct: 52 RAITRIIAGNDVIAQAQSGTGKTATFTIGMLQIIDSDKKQLQGLILSPTRELAVQINQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+K GG +++D + + ++ ++ GTPGRIL +++ + LN+ ++
Sbjct: 112 GNLGDYM-NVKSMAMIGGKMMKEDLKKINKNSCHVISGTPGRILDMIKRQLLNVRNIQIL 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P + QV++ SAT+ K I + KKFM+DP+++ V
Sbjct: 171 VLDEADELLSEILGFKQQIYDIFAKLPKSCQVVVVSATMDKNILEITKKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ N
Sbjct: 231 QD-EISLEGIKQYIVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSAKLAQAN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QE+R K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEDRDKVMNDFRTGHSRVLIS 321
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE+ + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRFGRKGV 364
>gi|398313027|emb|CCI88203.1| ATP-dependent RNA helicase, partial [Saccharomyces uvarum]
Length = 392
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 45 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLKKKDLQALILSPTRELANQIGQVV 104
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+ GG ++ D + L+ + Q+V GTPGR+L +++ + L ++
Sbjct: 105 TNLGDYM-NVNAFAMTGGKTLKDDLKKLQKNGCQVVSGTPGRVLDMIKRQMLQTRNVQVL 163
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
ILDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 164 ILDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 223
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ N
Sbjct: 224 RD-EISLEGIKQYVVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSN 282
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 283 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 314
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 310 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 357
>gi|22536941|ref|NP_687792.1| DEAD/DEAH box helicase [Streptococcus agalactiae 2603V/R]
gi|22533794|gb|AAM99664.1|AE014227_8 ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 2603V/R]
Length = 528
Score = 163 bits (413), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHVVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM DP V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDPIKRIGVKFMKDPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|398313029|emb|CCI88204.1| ATP-dependent RNA helicase, partial [Saccharomyces bayanus]
Length = 390
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 43 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLKKKDLQALILSPTRELANQIGQVV 102
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+ GG ++ D + L+ + Q+V GTPGR+L +++ + L ++
Sbjct: 103 TNLGDYM-NVNAFAMTGGKTLKDDLKKLQKNGCQVVSGTPGRVLDMIKRQMLQTRNVQVL 161
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
ILDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 162 ILDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 221
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ N
Sbjct: 222 RD-EISLEGIKQYVVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSN 280
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 281 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 312
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 308 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 355
>gi|398313025|emb|CCI88202.1| ATP-dependent RNA helicase, partial [Saccharomyces eubayanus]
Length = 393
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 95/272 (34%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELANQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+ GG ++ D + L+ + Q+V GTPGR+L +++ + L ++
Sbjct: 112 TNLGDYM-NVNAFAMTGGKTLKDDLKKLQKNGCQVVSGTPGRVLDMIKRQMLQTRNVQVL 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
ILDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 ILDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 46/60 (76%), Gaps = 1/60 (1%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V ++ + +A S
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV-AINFITKADSA 375
>gi|333986675|ref|YP_004519282.1| DEAD/DEAH box helicase domain-containing protein [Methanobacterium
sp. SWAN-1]
gi|333824819|gb|AEG17481.1| DEAD/DEAH box helicase domain protein [Methanobacterium sp. SWAN-1]
Length = 530
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 88/254 (34%), Positives = 155/254 (61%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + L+ ++ D ++ +++C TRELA Q+++E + SKYMS
Sbjct: 41 GRDVIGQAQTGTGKTAAFGIPILEMVDPGDRSLQAVILCPTRELAIQVAEEIRKLSKYMS 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IKV +GG PI++ + LK Q+++GTPGR++ +R L + +K +LDE D+M
Sbjct: 101 KIKVLPIYGGQPIERQIKALK-KGVQVIIGTPGRVMDHMRRGTLKMDSVKIMVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++ + R P +Q ++FSAT+S++I + +K+ ++P + V + +LT+
Sbjct: 160 LD-MGFRDDIEIVLRDMPSERQTLLFSATMSRDILNLTRKYQNNPEFLKVVHQ-ELTVPE 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+QQ Y ++KE K + L LLD+ F ++F + R L T L + + A +H M
Sbjct: 218 IQQIYFEVKEKMKLELLSRLLDIHNFKLSLVFCNTKRRVDKLVTHLQIRGYAADGLHGDM 277
Query: 389 TQEERLKKYQEFKD 402
TQ +R + +F++
Sbjct: 278 TQSQRDRVMAKFRN 291
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+D+E V VFNYD+P D + Y+HR+ R GR G
Sbjct: 296 VLVATDVAARGIDVENVEAVFNYDVPNDDEYYVHRIGRTGRAG 338
>gi|25010852|ref|NP_735247.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae NEM316]
gi|76786821|ref|YP_329524.1| DEAD/DEAH box helicase [Streptococcus agalactiae A909]
gi|76799328|ref|ZP_00781491.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77406817|ref|ZP_00783849.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|77411327|ref|ZP_00787675.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|406709269|ref|YP_006763995.1| ATP-dependent RNA helicase [Streptococcus agalactiae GD201008-001]
gi|424049656|ref|ZP_17787207.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|23095231|emb|CAD46441.1| Unknown [Streptococcus agalactiae NEM316]
gi|76561878|gb|ABA44462.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae A909]
gi|76585318|gb|EAO61913.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 18RS21]
gi|77162587|gb|EAO73550.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae CJB111]
gi|77174571|gb|EAO77408.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae H36B]
gi|389648929|gb|EIM70418.1| DEAD/DEAH box helicase [Streptococcus agalactiae ZQ0910]
gi|406650154|gb|AFS45555.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae GD201008-001]
Length = 528
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHVVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM DP V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDPIKRIGVKFMKDPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|255712573|ref|XP_002552569.1| KLTH0C07964p [Lachancea thermotolerans]
gi|238933948|emb|CAR22131.1| KLTH0C07964p [Lachancea thermotolerans CBS 6340]
Length = 398
Score = 163 bits (412), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 111/304 (36%), Positives = 169/304 (55%), Gaps = 11/304 (3%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T+ + G D++ QA+SG GKTA F + LQ ++ + LV+ TRELA QIS+
Sbjct: 55 TQIISGRDVIAQAQSGTGKTATFTIGMLQVIDFKSRELQSLVLSPTRELAKQISQVVGNL 114
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM NI GG +Q D + L TH +V GTPGR+L +++ + LN LK ILD
Sbjct: 115 GDYM-NISAHACTGGKAMQTDTKKL-THGCHVVSGTPGRVLDMIKRRILNTRHLKMLILD 172
Query: 264 ECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D++L E L ++ + +IF P + QV++ SAT+SK+I + KKFM DP+++ V +
Sbjct: 173 EADELLSETLGFKQQIYDIFAKLPKSVQVVVVSATMSKDILEITKKFMSDPVKILVKRD- 231
Query: 323 KLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++L G++Q++V + +E K L +L D L Q VIF + LS+ L + NF
Sbjct: 232 EISLEGIKQYHVNVDREEWKFDTLCDLYDSLTITQCVIFCNTKKVVDWLSSKLLQANFAV 291
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441
S+H M QE+R + DF G + S + A+ + +VQ V +LPD +L
Sbjct: 292 ASMHGDMKQEDRDR---VMNDFRSGTSRVLISTDVWARGI-DVQQVSLVINYDLPD--NL 345
Query: 442 STYI 445
YI
Sbjct: 346 ENYI 349
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+P++ + Y+HR+ R+GRFG K V
Sbjct: 316 RVLISTDVWARGIDVQQVSLVINYDLPDNLENYIHRIGRSGRFGRKGV 363
>gi|340794810|ref|YP_004760273.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
gi|340534720|gb|AEK37200.1| hypothetical protein CVAR_1849 [Corynebacterium variabile DSM
44702]
Length = 732
Score = 162 bits (411), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F L L +L+TT+ + VLV+ TRELA Q + +E F+ ++
Sbjct: 106 GHDVVGLAQTGTGKTAAFALPALSRLDTTERHPQVLVLAPTRELALQSADAFESFASHIG 165
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ + +GG P L+ Q++VGTPGRI+ + L+LS L+ +LDE D+M
Sbjct: 166 GVSILPIYGGAPYGAQLSGLR-RGAQVIVGTPGRIIDHLEKGSLDLSHLRFLVLDEADEM 224
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + DV+ I +P ++QV +FSAT+ IR + K++++DP E V E + T
Sbjct: 225 L-NMGFQEDVERILADTPDSRQVALFSATMPSAIRRLSKQYLNDPQEYTVKSEQR-TGDN 282
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y+ + K L +L+V EF+ ++IFV++ + L+ L + F A +I+ +
Sbjct: 283 ITQDYLMVSHRNKLDALTRILEVTEFDAMIIFVRTKSDTEELADKLRARGFEAAAINGDI 342
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 343 AQNQRERTVDQLKDGR--LDILVATD 366
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++R+ VFNYD+P D+++Y+HR+ R GR G
Sbjct: 361 ILVATDVAARGLDVDRITHVFNYDIPRDTESYVHRIGRTGRAG 403
>gi|408790661|ref|ZP_11202276.1| Cold-shock DEAD-box protein A [Lactobacillus florum 2F]
gi|408520002|gb|EKK20106.1| Cold-shock DEAD-box protein A [Lactobacillus florum 2F]
Length = 490
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 97/282 (34%), Positives = 156/282 (55%), Gaps = 13/282 (4%)
Query: 129 SDTYLHRVARAGRFGTKAVL---------GMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
SD+ L VA+ G A+ G D++ QA++G GKTA F L LQ ++ D
Sbjct: 9 SDSLLAAVAKNGYEEPTAIQAQTIPLTLQGEDVIGQAQTGTGKTAAFALPILQGIDVDDP 68
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
NV L++ TRELA Q E ++ + + V +GG I++ LK H PQ++VGT
Sbjct: 69 NVQALIISPTRELAIQTQNELQKLGRS-EGARAQVVYGGSDIRRQIYDLKKH-PQVIVGT 126
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGR+L ++ + L L +K +LDE D+ML + D+++I + +P +Q M+FSAT+
Sbjct: 127 PGRLLDHIQRRTLKLDHVKFLVLDEADEMLN-MGFLEDIEKIIKETPTERQTMLFSATMP 185
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
IR V KFM DP +V V + +LT + Q+YVK+++NEK + L DV + + +I
Sbjct: 186 APIRRVGLKFMTDPKQVKVKAK-ELTTDLVDQYYVKVRDNEKFDTMTRLFDVEQPDVTII 244
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
F ++ R ++ + + + A +H +TQ R + +FK
Sbjct: 245 FCRTKRRVDEVAKGMVARGYQAAGLHGDLTQNRRTQIMNDFK 286
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 33/46 (71%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
LVAT++ RG+D+ V V+N+D+P+D ++Y+HR+ R GR G V
Sbjct: 293 LVATDVAARGIDVSGVTHVYNFDIPQDPESYVHRIGRTGRAGRHGV 338
>gi|365852717|ref|ZP_09393074.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
gi|363714293|gb|EHL97826.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus
parafarraginis F0439]
Length = 503
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/290 (34%), Positives = 159/290 (54%), Gaps = 7/290 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ L+ + NV L++ TRELA Q +E R K
Sbjct: 38 GEDVIGQAQTGTGKTAAFGLPILQNLDFDNPNVQALIISPTRELAIQTQEEIYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQI+VGTPGRIL + L L+ +K +LDE D+M
Sbjct: 97 KAKVQVVYGGADIRRQINALKSH-PQIIVGTPGRILDHISRHTLKLAHIKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 L-NMGFLDDIESIIKQTPEDRQTLLFSATMPPQIKRVGVQFMRDPHQVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++KE EK + DV + ++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTKRRVDEVSKGLEARGYKAAGLHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
TQ R + EFK + I A+D I ++ V ++ I + PD
Sbjct: 274 TQARRTQIMNEFK--QGKIDILVATDVAARGIDISGVTHVYNYDIPQDPD 321
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGV 338
>gi|332798288|ref|YP_004459787.1| DEAD/DEAH box helicase domain-containing protein [Tepidanaerobacter
acetatoxydans Re1]
gi|438001218|ref|YP_007270961.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
gi|332696023|gb|AEE90480.1| DEAD/DEAH box helicase domain protein [Tepidanaerobacter
acetatoxydans Re1]
gi|432178012|emb|CCP24985.1| Cold-shock DEAD-box protein A [Tepidanaerobacter acetatoxydans Re1]
Length = 529
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 150/254 (59%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++T D N +++C TRELA Q+++E + SKY
Sbjct: 41 GRDVIGQAQTGTGKTAAFGLPILDMIDTDDKNQQAIILCPTRELAIQVAEELKALSKYKE 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+K+ +GG PI++ LK QI++GTPGR++ +R L L K +LDE D+M
Sbjct: 101 GMKILPVYGGQPIERQIHALK-RGVQIIIGTPGRVMDHMRRHTLKLQNTKIVVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D+++I +P +Q +MFSAT+ K I + ++++++P + V + +LT+
Sbjct: 160 LD-MGFREDIEKILEDTPKARQTLMFSATIPKPILELAERYLNNPQLIKVVHK-ELTVPS 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+Y ++KE +K + L L+D N ++F + R L L + + A +H M
Sbjct: 218 VEQYYFEVKERDKVEALSRLIDFYNPNLALVFCNTKKRVDELMEQLQARGYSADGLHGDM 277
Query: 389 TQEERLKKYQEFKD 402
+Q +R + +FK+
Sbjct: 278 SQSQRDRVMTKFKN 291
>gi|367013342|ref|XP_003681171.1| hypothetical protein TDEL_0D03760 [Torulaspora delbrueckii]
gi|359748831|emb|CCE91960.1| hypothetical protein TDEL_0D03760 [Torulaspora delbrueckii]
Length = 398
Score = 162 bits (411), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 96/276 (34%), Positives = 157/276 (56%), Gaps = 4/276 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ +E ++ LV+ TRELA QI
Sbjct: 48 AIQSRAITQIISGKDVIAQAQSGTGKTATFTIGILQAIELKRKDLQALVLSPTRELATQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
S+ YM N+K GG ++ D + ++ IV GTPGR+L +++ + L
Sbjct: 108 SQVVSNLGDYM-NVKTYAITGGKTLKDDIKKIQGSGCHIVSGTPGRVLDMIKRQILKTRS 166
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
++ ILDE D++L E+L + + +IF P QV++ SAT++K+I + KKFM DP++
Sbjct: 167 VQMLILDEADELLSERLGFKNQIYDIFTKLPPACQVVVVSATMNKDILEITKKFMSDPVK 226
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + +++L G++Q+ V + KE+ K L +L D L Q VIF + + L+ +
Sbjct: 227 ILVKKD-EISLEGIKQYMVNVDKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLAQKM 285
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
S+ NF S+H M QE+R + +F+ H + I+
Sbjct: 286 SQSNFAVSSMHGDMKQEDRDRVMNDFRTGHSRVLIS 321
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D++++++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQISLVINYDIPEILENYIHRIGRSGRFGRKGV 364
>gi|226468128|emb|CAX76291.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
Length = 392
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 118/406 (29%), Positives = 191/406 (47%), Gaps = 84/406 (20%)
Query: 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140
GF LK E+LR I F Y+ P A
Sbjct: 20 GFEKLGLKSELLRGIYS-----------------------FGYEKPS---------AIQQ 47
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R +V G D++ QA+SG GKTA F ++ LQ+++ + + LV+ TRELA QI
Sbjct: 48 RAIKPSVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQALVLVPTRELARQIQTVV 107
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+R Y+ N++ GG + +D L+ +VVGTPGR++ ++ L S +K F
Sbjct: 108 QRIGSYL-NVRCHTCIGGTRMSEDVACLQ-QGQHVVVGTPGRVIDMMNRSILATSNIKIF 165
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D+ML + ++EI++ P + Q+M+ SAT+ K++ + + M DP+++ +
Sbjct: 166 VLDEADQMLGR-GFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIARGIMQDPVQILIKK 224
Query: 321 EAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
E +LTL G++Q Y+ + KE K + L +L V+ +QVVIFV SV + LS L+ +NF
Sbjct: 225 E-ELTLDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKASYLSEELANRNF 283
Query: 380 PAVSIHRGMTQEERLKKYQEFKD------------------------------------F 403
I+ M QE+R + +E++
Sbjct: 284 QVSCINSDMEQEKRDRVMEEYRSGRSRILLSTDVLARGIDVQQVSLVVNYDLPGDRETYI 343
Query: 404 H----------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
H KG AI F +D + + L ++Q ++ I E+PD+I
Sbjct: 344 HRICRGGRFGRKGTAINFITD-TEKEALRDLQTYYNTEILEMPDDI 388
>gi|449017021|dbj|BAM80423.1| eukaryotic translation initiation factor eIF-4A [Cyanidioschyzon
merolae strain 10D]
Length = 417
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 95/265 (35%), Positives = 150/265 (56%), Gaps = 4/265 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D+L Q++SG GKT FV+ LQ ++T+ V L++ TRELA QI K Y
Sbjct: 78 VKGRDMLAQSQSGTGKTGCFVIGMLQNVDTSVRKVQGLILAPTRELAQQIQKVALALGDY 137
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M +KV GG + D L+ P ++VGTPGR+ +++ + L+ + +K F++DE D
Sbjct: 138 M-GVKVHACIGGTRVVDDLRTLEQDTPHVIVGTPGRVYDMIQRRALDTTTIKCFVMDEAD 196
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +F+ P QV +FSAT+ EI + +KF+ DP + V + +LTL
Sbjct: 197 EMLSR-GFKEQIYMVFQYMPANCQVALFSATIPAEIVEMAEKFLRDPARILVRKD-ELTL 254
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + KE K + L +L + + +Q VIFV S + LS + E++F IH
Sbjct: 255 QGIRQFYIMVEKEEWKLETLIDLYETISASQTVIFVNSRRKAEWLSERMRERDFTVSVIH 314
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M+QEER +EF+ + IT
Sbjct: 315 ADMSQEERNLIMREFRSGSSRVLIT 339
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HRV R+GRFG K V
Sbjct: 335 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRVGRSGRFGRKGV 382
>gi|392495124|gb|AFM74225.1| DEAD box ATP-dependent RNA helicase [Spirometra erinaceieuropaei]
Length = 404
Score = 162 bits (410), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 101/284 (35%), Positives = 155/284 (54%), Gaps = 9/284 (3%)
Query: 132 YLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187
Y + R +A+L G D++ QA+SG GKTA F ++ LQ+L+ + + LV+
Sbjct: 36 YQYGYERPSAIQQRAILPCIQGRDVIAQAQSGTGKTATFAISILQKLDVSLNKCQALVLA 95
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
TRELA QI ++ ++ K GG D L + +VVGTPGR+L ++
Sbjct: 96 PTRELANQIQSVIQKIG-HLLGAKCYACIGGTRTTNDLMSL-SGGQHVVVGTPGRVLDMM 153
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
L +K F+LDE D+ML + +Q IFR P T Q+++ SAT+ +EI V K
Sbjct: 154 NRDVLTTDNIKMFVLDEADEMLSR-GFAAQIQNIFRFLPSTAQIILLSATMPREIFEVTK 212
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTR 366
+ M+DP+E+ V E +LTL G++Q Y+K++ E K L +L +L+ QVVIFV +V +
Sbjct: 213 QMMNDPVEILVKKE-ELTLDGIRQFYIKVRREEYKLPTLLDLYSLLDIGQVVIFVNTVKK 271
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
I L L EQ F IH + Q++R EF+ H + ++
Sbjct: 272 AIGLEEQLREQKFKVSCIHSDLQQDQRDSVMNEFRRGHSRILLS 315
Score = 47.0 bits (110), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P +TY+HR+
Sbjct: 311 RILLSTDILARGIDVQQVSLVLNYDLPSKRETYIHRIG 348
>gi|323355798|gb|EGA87612.1| Fal1p [Saccharomyces cerevisiae VL3]
Length = 372
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 25 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 84
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++
Sbjct: 85 KNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQML 143
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 144 VLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 203
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + N
Sbjct: 204 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN 262
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 263 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 294
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 290 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 337
>gi|259145266|emb|CAY78530.1| Fal1p [Saccharomyces cerevisiae EC1118]
gi|323309503|gb|EGA62714.1| Fal1p [Saccharomyces cerevisiae FostersO]
gi|323334268|gb|EGA75650.1| Fal1p [Saccharomyces cerevisiae AWRI796]
gi|349577091|dbj|GAA22260.1| K7_Fal1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 399
Score = 162 bits (410), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++
Sbjct: 112 KNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 VLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|226468140|emb|CAX76297.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
Length = 392
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 153/257 (59%), Gaps = 5/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+V G D++ QA+SG GKTA F ++ LQ+++ + + LV+ TRELA QI +R
Sbjct: 53 SVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQALVLVPTRELARQIQTVVQRIGS 112
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y+ N++ GG + +D L+ +VVGTPGR++ ++ L S +K F+LDE
Sbjct: 113 YL-NVRCHTCIGGTRMSEDVACLQ-QGQHVVVGTPGRVIDMMNRSILATSNIKIFVLDEA 170
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + ++EI++ P + Q+M+ SAT+ K++ + + M DP+++ + E +LT
Sbjct: 171 DQMLGR-GFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIARGIMQDPVQILIKKE-ELT 228
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q Y+ + KE K + L +L V+ +QVVIFV SV + LS L+ +NF I
Sbjct: 229 LDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKASYLSEELANRNFQVSCI 288
Query: 385 HRGMTQEERLKKYQEFK 401
+ M QE+R + +E++
Sbjct: 289 NSDMEQEKRDRVMEEYR 305
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 32/38 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P D +TY+HR+
Sbjct: 310 RILLSTDVLARGIDVQQVSLVVNYDLPGDRETYIHRIG 347
>gi|398365053|ref|NP_010304.3| Fal1p [Saccharomyces cerevisiae S288c]
gi|2500524|sp|Q12099.1|FAL1_YEAST RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
Full=Translation initiation factor four A-like protein 1
gi|160385737|sp|A6ZXY5.1|FAL1_YEAS7 RecName: Full=ATP-dependent RNA helicase FAL1; AltName:
Full=Translation initiation factor four A-like protein 1
gi|840874|emb|CAA89846.1| unknown [Saccharomyces cerevisiae]
gi|1216228|emb|CAA65213.1| orf:PZC399 [Saccharomyces cerevisiae]
gi|1431450|emb|CAA98842.1| FAL1 [Saccharomyces cerevisiae]
gi|51830220|gb|AAU09684.1| YDR021W [Saccharomyces cerevisiae]
gi|151942009|gb|EDN60365.1| conserved protein [Saccharomyces cerevisiae YJM789]
gi|256273263|gb|EEU08206.1| Fal1p [Saccharomyces cerevisiae JAY291]
gi|285811043|tpg|DAA11867.1| TPA: Fal1p [Saccharomyces cerevisiae S288c]
gi|392300135|gb|EIW11226.1| Fal1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 399
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++
Sbjct: 112 KNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 VLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|227522395|ref|ZP_03952444.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
gi|227090453|gb|EEI25765.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus hilgardii
ATCC 8290]
Length = 502
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 143/253 (56%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ L+ + NV L++ TRELA Q +E R K
Sbjct: 38 GEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQALIISPTRELAIQTQEEVYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQI+VGTPGRIL + L L +K +LDE D+M
Sbjct: 97 KAKVQVVYGGADIRRQINSLKSH-PQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 L-NMGFLDDIESIIKQTPSDRQTLLFSATMPPQIKRVGVQFMKDPHQVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++KE EK + DV + ++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ R + EFK
Sbjct: 274 TQARRTQIMNEFK 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGV 338
>gi|227509297|ref|ZP_03939346.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227512309|ref|ZP_03942358.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227084484|gb|EEI19796.1| ATP-dependent RNA helicase [Lactobacillus buchneri ATCC 11577]
gi|227191227|gb|EEI71294.1| ATP-dependent RNA helicase [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 502
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 143/253 (56%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ L+ + NV L++ TRELA Q +E R K
Sbjct: 38 GEDVIGQAQTGTGKTAAFALPILQHLDFNNPNVQALIISPTRELAIQTQEEVYRLGKD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQI+VGTPGRIL + L L +K +LDE D+M
Sbjct: 97 KAKVQVVYGGADIRRQINSLKSH-PQIIVGTPGRILDHISRHTLKLEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ +I+ V +FM DP +V + + +LT
Sbjct: 156 L-NMGFLDDIESIIKQTPSDRQTLLFSATMPPQIKRVGVQFMKDPHQVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++KE EK + DV + ++F ++ R +S L + + A +H +
Sbjct: 214 IDQYYVRVKEYEKFDTMTRFFDVQDPEVTIVFCRTKRRVDEVSKGLEARGYNAAGLHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ R + EFK
Sbjct: 274 TQARRTQIMNEFK 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDISGVTHVYNYDIPQDPDGYVHRVGRTGRAGKHGV 338
>gi|190405005|gb|EDV08272.1| eukaryotic initiation factor 4A-12 [Saccharomyces cerevisiae
RM11-1a]
Length = 399
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++
Sbjct: 112 KNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 VLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|56756691|gb|AAW26518.1| SJCHGC06278 protein [Schistosoma japonicum]
gi|226468130|emb|CAX76292.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
gi|226468134|emb|CAX76294.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
gi|226468136|emb|CAX76295.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
gi|226468138|emb|CAX76296.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
gi|226472622|emb|CAX70997.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
Length = 392
Score = 162 bits (409), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 153/257 (59%), Gaps = 5/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+V G D++ QA+SG GKTA F ++ LQ+++ + + LV+ TRELA QI +R
Sbjct: 53 SVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQALVLVPTRELARQIQTVVQRIGS 112
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y+ N++ GG + +D L+ +VVGTPGR++ ++ L S +K F+LDE
Sbjct: 113 YL-NVRCHTCIGGTRMSEDVACLQ-QGQHVVVGTPGRVIDMMNRSILATSNIKIFVLDEA 170
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + ++EI++ P + Q+M+ SAT+ K++ + + M DP+++ + E +LT
Sbjct: 171 DQMLGR-GFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIARGIMQDPVQILIKKE-ELT 228
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q Y+ + KE K + L +L V+ +QVVIFV SV + LS L+ +NF I
Sbjct: 229 LDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKASYLSEELANRNFQVSCI 288
Query: 385 HRGMTQEERLKKYQEFK 401
+ M QE+R + +E++
Sbjct: 289 NSDMEQEKRDRVMEEYR 305
Score = 48.5 bits (114), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 32/38 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P D +TY+HR+
Sbjct: 310 RILLSTDVLARGIDVQQVSLVVNYDLPGDRETYIHRIG 347
>gi|336392377|ref|ZP_08573776.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. torquens KCTC 3535]
Length = 515
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
AV G+D++ QA++G GKTA F LA LQ+++ + NV L++ TRELA Q +E R +
Sbjct: 35 AVTGVDVIGQAQTGTGKTAAFGLAILQKIDLENPNVQALIISPTRELAVQTQEELYRLGQ 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I + LK H PQI+VGTPGR+ + + + L ++ +LDE
Sbjct: 95 D-KKVKVQAVYGGADIGRQIRSLKDH-PQIIVGTPGRLQDHINRRTIRLDHVQVLVLDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + D+++I + P T+Q ++FSAT+ IR + +FMHDP V + + +LT
Sbjct: 153 DEMLD-MGFLEDIEKIVQQVPDTRQTLLFSATIPAAIRKIADRFMHDPKMVQIKAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L Q++V+ KE EK + L DV + ++F ++ R LS L + + A IH
Sbjct: 211 ADLLDQYFVQTKEFEKFDVMTRLFDVQQPELTIVFGRTKRRVDELSKGLRARGYNAEGIH 270
Query: 386 RGMTQEERLKKYQEFK 401
++Q++R+ + FK
Sbjct: 271 GDLSQQKRMSVLRSFK 286
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HRV R R G K
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTARAGHKGT 338
>gi|323349512|gb|EGA83736.1| Fal1p [Saccharomyces cerevisiae Lalvin QA23]
gi|365766533|gb|EHN08029.1| Fal1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 399
Score = 162 bits (409), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 155/269 (57%), Gaps = 4/269 (1%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI + +
Sbjct: 55 TQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++ +LD
Sbjct: 115 GDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQMLVLD 173
Query: 264 ECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V +
Sbjct: 174 EADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD- 232
Query: 323 KLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + NF
Sbjct: 233 EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAV 292
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
VS+H M QEER K +F+ H + I+
Sbjct: 293 VSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|226468132|emb|CAX76293.1| Eukaryotic initiation factor 4A [Schistosoma japonicum]
Length = 392
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 153/257 (59%), Gaps = 5/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+V G D++ QA+SG GKTA F ++ LQ+++ + + LV+ TRELA QI +R
Sbjct: 53 SVEGRDVIAQAQSGTGKTATFAISILQRIDVSSNTCQALVLVPTRELARQIQTVVQRIGS 112
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y+ N++ GG + +D L+ +VVGTPGR++ ++ L S +K F+LDE
Sbjct: 113 YL-NVRCHTCIGGTRMSEDVACLQ-QGQHVVVGTPGRVIDMMNRSILATSNIKIFVLDEA 170
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + ++EI++ P + Q+M+ SAT+ K++ + + M DP+++ + E +LT
Sbjct: 171 DQMLGR-GFEPQIKEIYKYLPESAQIMLLSATMPKQMLTIARGIMQDPVQILIKKE-ELT 228
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q Y+ + KE K + L +L V+ +QVVIFV SV + LS L+ +NF I
Sbjct: 229 LDGIKQFYINVSKEEYKLETLMDLYKVMNLSQVVIFVNSVRKASYLSEELANRNFQVSCI 288
Query: 385 HRGMTQEERLKKYQEFK 401
+ M QE+R + +E++
Sbjct: 289 NSDMEQEKRDRVMEEYR 305
Score = 48.1 bits (113), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 32/38 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P D +TY+HR+
Sbjct: 310 RILLSTDVLARGIDVQQVSLVVNYDLPGDHETYIHRIG 347
>gi|184154685|ref|YP_001843025.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
gi|183226029|dbj|BAG26545.1| ATP-dependent RNA helicase [Lactobacillus fermentum IFO 3956]
Length = 492
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 156/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L T++ ++ + + L++ TRELA Q +E R K
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPTIEHVDVENPAIQTLIISPTRELAIQTEEELFRLGKE-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV V +GG I++ L+ NPQI+VGTPGR+ +R ++LS ++ +LDE D+M
Sbjct: 97 RVKVQVVYGGADIRRQIRSLE-KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + +P +Q ++FSAT+ EI+ + +FMHDP V + + +LT
Sbjct: 156 L-NMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQFMHDPQTVKIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ K+ EK + ++DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K + FK+ H L I A+D
Sbjct: 274 TQDRRSKIMRRFKEGH--LDILVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 338
>gi|227514325|ref|ZP_03944374.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
ATCC 14931]
gi|227087297|gb|EEI22609.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus fermentum
ATCC 14931]
Length = 495
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 156/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L T++ ++ + + L++ TRELA Q +E R K
Sbjct: 41 GKDVIGQAQTGTGKTAAFGLPTIEHVDVENPAIQALIISPTRELAIQTEEELFRLGKE-K 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV V +GG I++ L+ NPQI+VGTPGR+ +R ++LS ++ +LDE D+M
Sbjct: 100 RVKVQVVYGGADIRRQIRSLEK-NPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + +P +Q ++FSAT+ EI+ + +FMHDP V + + +LT
Sbjct: 159 L-NMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQFMHDPQTVKIKAK-ELTTDL 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ K+ EK + ++DV + + ++F ++ R LS L + + A IH +
Sbjct: 217 VDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDL 276
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K + FK+ H L I A+D
Sbjct: 277 TQDRRSKIMRRFKEGH--LDILVATD 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 295 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 341
>gi|260663734|ref|ZP_05864622.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
gi|260551785|gb|EEX24901.1| ATP-dependent RNA helicase [Lactobacillus fermentum 28-3-CHN]
Length = 495
Score = 161 bits (408), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 156/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L T++ ++ + + L++ TRELA Q +E R K
Sbjct: 41 GKDVIGQAQTGTGKTAAFGLPTIEHVDVENPAIQALIISPTRELAIQTEEELFRLGKE-K 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV V +GG I++ L+ NPQI+VGTPGR+ +R ++LS ++ +LDE D+M
Sbjct: 100 RVKVQVVYGGADIRRQIRSLE-KNPQILVGTPGRLRDHLRRGTVDLSGVQTLVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + +P +Q ++FSAT+ EI+ + +FMHDP V + + +LT
Sbjct: 159 L-NMGFLEDIEDIIKQTPSERQTLLFSATMPPEIKRIGVQFMHDPQTVKIKAK-ELTTDL 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ K+ EK + ++DV + + ++F ++ R LS L + + A IH +
Sbjct: 217 VDQYYVRAKDYEKFDIMTRMIDVQDPDLTIVFGRTKRRVDELSRGLIARGYNAAGIHGDL 276
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K + FK+ H L I A+D
Sbjct: 277 TQDRRSKIMRRFKEGH--LDILVATD 300
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 295 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 341
>gi|421893868|ref|ZP_16324361.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
gi|385273353|emb|CCG89733.1| DEAD-box ATP-dependent RNA helicase CshA [Pediococcus pentosaceus
IE-3]
Length = 526
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 150/266 (56%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIISPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + K + L +K +LDE D M
Sbjct: 97 KAKVQVVYGGSDIRRQINALKSH-PQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I +P +Q ++FSAT+ I+ + KFM DP ++ V + +LT
Sbjct: 156 LD-MGFLPDIEHIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQITVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ KE EK L +LDV VIF ++ R +S L + + A IH +
Sbjct: 214 VDQYYVRSKEFEKFDILTRVLDVQAPKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++F++ L I A+D
Sbjct: 274 TQQRRMSILRQFREGQ--LDILVATD 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|116493289|ref|YP_805024.1| superfamily II DNA/RNA helicase [Pediococcus pentosaceus ATCC
25745]
gi|116103439|gb|ABJ68582.1| Superfamily II DNA and RNA helicase [Pediococcus pentosaceus ATCC
25745]
Length = 526
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 150/266 (56%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIISPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + K + L +K +LDE D M
Sbjct: 97 KAKVQVVYGGSDIRRQINALKSH-PQIVVGTPGRLLDHIGRKTIRLDHVKTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I +P +Q ++FSAT+ I+ + KFM DP ++ V + +LT
Sbjct: 156 LD-MGFLPDIEHIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQITVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ KE EK L +LDV VIF ++ R +S L + + A IH +
Sbjct: 214 VDQYYVRSKEFEKFDILTRVLDVQAPKLAVIFGRTKRRVDEVSKGLVTRGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++F++ L I A+D
Sbjct: 274 TQQRRMSILRQFREGQ--LDILVATD 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|77409647|ref|ZP_00786319.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|339301744|ref|ZP_08650830.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|417005047|ref|ZP_11943640.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|421146787|ref|ZP_15606490.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
gi|77171747|gb|EAO74944.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae COH1]
gi|319744779|gb|EFV97119.1| ATP-dependent RNA helicase [Streptococcus agalactiae ATCC 13813]
gi|341576860|gb|EGS27268.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae FSL
S3-026]
gi|401686494|gb|EJS82471.1| DEAD/DEAH box helicase [Streptococcus agalactiae GB00112]
Length = 528
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHVVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEARQTLLFSATMPDPIKRIGVKFMKDPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I +
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVS 344
Query: 157 KSGMG 161
+ MG
Sbjct: 345 PNEMG 349
>gi|323305584|gb|EGA59325.1| Fal1p [Saccharomyces cerevisiae FostersB]
Length = 408
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 94/272 (34%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++
Sbjct: 112 KNLGDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKRQMLQTRNVQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 VLDEADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L + N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 65.5 bits (158), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWXRGIDVQQVSLVINYDLPEIIEXYIHRIGRSGRFGRKGV 364
>gi|221118846|ref|XP_002163229.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Hydra
magnipapillata]
Length = 409
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 98/266 (36%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA+SG GKTA F +A LQ+L+ ++ N LV+ TRELA QI K
Sbjct: 70 AIKGYDVIAQAQSGTGKTATFSIAILQKLDLSNFNAQALVLAPTRELAQQIQKVIMALGD 129
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +KV GG +++D + L +VVGTPGR+ ++ LN LK FILDE
Sbjct: 130 Y-QKVKVHGCIGGTAVRQDLDVLNA-GVHVVVGTPGRVFDMISRGALNTDSLKMFILDEA 187
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + ++FR P + QV++ SAT+ ++ V K+FM DP+ + V E +LT
Sbjct: 188 DEMLSR-GFKDQIYDVFRRLPSSIQVILLSATMPDDVLEVTKRFMRDPINILVKKE-ELT 245
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q ++ + KE K + L +L D + Q VIF+ + + L L+E+ F S+
Sbjct: 246 LEGIKQFFINVEKEEWKLETLTDLYDTMTITQAVIFLNTRRKVDWLKEKLNEKLFTVSSM 305
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q ER +EF+ + IT
Sbjct: 306 HGDMDQSERDLIMKEFRSGSSRVLIT 331
Score = 45.8 bits (107), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 327 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 364
>gi|410079649|ref|XP_003957405.1| hypothetical protein KAFR_0E01160 [Kazachstania africana CBS 2517]
gi|372463991|emb|CCF58270.1| hypothetical protein KAFR_0E01160 [Kazachstania africana CBS 2517]
Length = 405
Score = 161 bits (408), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 101/282 (35%), Positives = 159/282 (56%), Gaps = 10/282 (3%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ S + L++ TRELA QI
Sbjct: 48 AIQSRAITQIISGRDVIAQAQSGTGKTATFTIGMLQVCNFKSSELQCLILSPTRELASQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPI------QKDEEYLKTHNPQIVVGTPGRILALVRNK 250
++ Y+ N+K GG + D L+ + IV GTPGR+L L++ +
Sbjct: 108 NQVVCNIGDYL-NVKSMAVVGGKTSASSSKNKNDLNLLRNNKCHIVSGTPGRVLDLIKRQ 166
Query: 251 KLNLSLLKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
+N +K +LDE D++L E L ++ + +IF P T QV++ SAT++K+I V KKF
Sbjct: 167 VINTKKVKILVLDEADELLAESLGFKQQIYDIFTKLPKTCQVVVVSATMNKDIIEVTKKF 226
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCI 368
++DP+++ V + +++L G++Q++V + KE K L +L D L NQ VIF + +
Sbjct: 227 LNDPVKILVKQD-QISLEGIKQYHVNVDKEEWKFDTLCDLYDSLTINQCVIFCNTKKKVD 285
Query: 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
LS+ L + NF VS+H M QEER K +F+ H + I+
Sbjct: 286 WLSSKLLQANFSVVSMHGDMKQEERDKIMNDFRSGHSRVLIS 327
Score = 69.3 bits (168), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE+ + Y+HR+ R+GRFG K V
Sbjct: 323 RVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRFGRKGV 370
>gi|365761568|gb|EHN03213.1| Fal1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 329
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 92/272 (33%), Positives = 158/272 (58%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLKRMDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+ GG ++ D + ++ + Q++ GTPGR+L +++ + L ++
Sbjct: 112 TNLGDYM-NVNAFAMTGGKTLKDDLKKIQKNGCQVISGTPGRVLDMIKRQMLQTRNVRML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
ILDE D++L E L ++ + +IF P QV++ SAT++K+I V +KF++DP+++ V
Sbjct: 171 ILDEADELLSETLGFKQQIYDIFTKLPKNCQVVVVSATMNKDILEVTRKFLNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ N
Sbjct: 231 RD-EISLEGIKQYIVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
>gi|410594336|ref|YP_006951063.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
gi|410517975|gb|AFV72119.1| ATP-dependent RNA helicase exp9 [Streptococcus agalactiae SA20-06]
Length = 516
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHVVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEARQTLLFSATMPDPIKRIGVKFMKDPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I +
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVS 344
Query: 157 KSGMG 161
+ MG
Sbjct: 345 PNEMG 349
>gi|401839441|gb|EJT42668.1| FAL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 399
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 91/269 (33%), Positives = 157/269 (58%), Gaps = 4/269 (1%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 55 TQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLKRMDLQALILSPTRELASQIGQVVTNL 114
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM N+ GG ++ D + ++ + Q++ GTPGR+L +++ + L ++ ILD
Sbjct: 115 GDYM-NVNAFAMTGGKTLKDDLKKIQKNGCQVISGTPGRVLDMIKRQMLQTRNVRMLILD 173
Query: 264 ECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D++L E L ++ + +IF P QV++ SAT++K+I V +KF++DP+++ V +
Sbjct: 174 EADELLSETLGFKQQIYDIFTKLPKNCQVVVVSATMNKDILEVTRKFLNDPVKILVKRD- 232
Query: 323 KLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++L G++Q+ V + KE+ K L ++ D L Q VIF + + LS L++ NF
Sbjct: 233 EISLEGIKQYIVNVDKEDWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSNFAV 292
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
VS+H M QEER K +F+ H + I+
Sbjct: 293 VSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|408355702|ref|YP_006844233.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
gi|407726473|dbj|BAM46471.1| ATP-dependent RNA helicase [Amphibacillus xylanus NBRC 15112]
Length = 483
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 98/290 (33%), Positives = 163/290 (56%), Gaps = 7/290 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + ++Q+E + LV+ TRELA Q+S+E R K+
Sbjct: 39 GEDVIGQAQTGTGKTAAFGIPMIEQIEKKQRKIQGLVVAPTRELAIQVSEEIHRIGKF-K 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG +Q+ LK P IVV TPGR+L +R K +N+S +K +LDE D+M
Sbjct: 98 GIRSLPIYGGQQMQRQIRSLK-EGPHIVVATPGRLLDHMRRKTINISDVKTIVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++EI + PH +Q ++FSAT+ KEIR + M +P EV V + +L++
Sbjct: 157 L-NMGFIDDIREILKMIPHERQTLLFSATMPKEIRQIASTMMREPKEVKVKSK-QLSVEN 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++++ E +K L LLD+ +IF ++ R L+ L + F A IH +
Sbjct: 215 IEQRFIEVHEKQKFDALTNLLDIHVPELAIIFGRTKKRVDELTDGLQARGFRAEGIHGDL 274
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
TQ +R+ +FK+ + I A+D + ++NV ++ I + P+
Sbjct: 275 TQGKRMSVLNKFKNGR--IEILVATDVAARGLDISNVTHVYNFDIPQDPE 322
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G V
Sbjct: 293 ILVATDVAARGLDISNVTHVYNFDIPQDPESYVHRIGRTGRAGKTGV 339
>gi|391346751|ref|XP_003747632.1| PREDICTED: eukaryotic initiation factor 4A-I-like [Metaseiulus
occidentalis]
Length = 407
Score = 161 bits (407), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 99/284 (34%), Positives = 155/284 (54%), Gaps = 9/284 (3%)
Query: 132 YLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187
Y + R +A+L G D++ QA+SG GKTA F ++ LQQ++ +D L++
Sbjct: 50 YAYGFERPSAIQQRAILPCVKGHDVIAQAQSGTGKTATFSISILQQIDVSDPACQALILA 109
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
TRELA QI K YM N GG +++D L+T +VVGTPGR+ +V
Sbjct: 110 PTRELAQQIQKVVIALGDYM-NANCHACIGGTNVREDMRKLET-GVHVVVGTPGRVFDMV 167
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ L +K F+LDE D+ML + + + ++FR PH QV++ SAT+ +++ V K
Sbjct: 168 QRNSLRPDKIKIFVLDEADEMLSR-GFKDQIHDVFRLLPHNIQVILLSATMPQDVLEVTK 226
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
FM DP+ + V E +LTL G++Q YV + KE K L +L + L Q VIF + +
Sbjct: 227 CFMRDPIRILVKKE-ELTLEGIKQFYVNVTKEEWKFDTLTDLYETLTITQAVIFCNTRRK 285
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
L+ ++E++F ++H MTQ+ER + F+ + IT
Sbjct: 286 VDWLTQRMTERDFTVSALHGDMTQQERDVIMRAFRSGSSRVLIT 329
Score = 43.5 bits (101), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V N+D+P + + Y+HR+
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINFDVPTNRENYIHRIG 362
>gi|444323445|ref|XP_004182363.1| hypothetical protein TBLA_0I01860 [Tetrapisispora blattae CBS 6284]
gi|387515410|emb|CCH62844.1| hypothetical protein TBLA_0I01860 [Tetrapisispora blattae CBS 6284]
Length = 387
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 95/267 (35%), Positives = 156/267 (58%), Gaps = 4/267 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ ++ + ++ L++ TRELA QI
Sbjct: 48 AIQSRAITQIISGKDVIAQAQSGTGKTATFTIGMLQAIDLKNKDLQALILSPTRELASQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
+ YM N++ GG ++ D + ++ + Q+V GTPGR+L + + + L
Sbjct: 108 HQVVSNLGDYM-NVQSFAITGGKTMKDDIKKIQRNGCQVVSGTPGRVLDMFKRQMLKSRN 166
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
+K ILDE D++L E L ++ + +IF P + QV++ SAT++K+I + KKFM+DP++
Sbjct: 167 IKMLILDEADELLSETLGFKQQIYDIFTKLPPSCQVVVVSATMNKDILEITKKFMNDPVK 226
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + +++L G++Q+YV + +E K L +L D L Q VIF S + LS L
Sbjct: 227 ILVKRD-EISLEGIKQYYVNVEREEWKFDTLCDLYDSLTITQCVIFCNSKKKVDWLSQKL 285
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFK 401
+ NF VS+H M Q+ER + EF+
Sbjct: 286 IQNNFAIVSMHGDMEQDERDRVMNEFR 312
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+LV+T+++ RG+D+++V++V NYD+ E+ + Y+HR+ R+GRFG K +
Sbjct: 317 RVLVSTDVWARGIDVQQVSLVINYDLCENLENYIHRIGRSGRFGRKGI 364
>gi|120612881|ref|YP_972559.1| DEAD/DEAH box helicase [Acidovorax citrulli AAC00-1]
gi|120591345|gb|ABM34785.1| ATP-dependent RNA helicase DbpA [Acidovorax citrulli AAC00-1]
Length = 477
Score = 161 bits (407), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 160/293 (54%), Gaps = 7/293 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+LG D++ QA +G GKTA F LA L++L V LV+C TRELA Q++ E R ++
Sbjct: 51 ALLGRDLIAQASTGSGKTAAFGLALLERLNPRRFAVQALVLCPTRELADQVAAEIRRLAR 110
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
NIKV GG+P++ L+ H +VVGTPGR++ + L+L L F+LDE
Sbjct: 111 AQENIKVVTLCGGVPLRGQAASLE-HGAHVVVGTPGRVMDHLERGTLDLGALATFVLDEA 169
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + D+ ++ R P T+Q ++FSAT + I + ++FM DP + V +A+
Sbjct: 170 DRMLD-MGFSEDIAQVARRCPDTRQTLLFSATYPEGIERIARQFMKDPQRIVV--QAQHA 226
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q + +++E E+ + +LL+ + F + +C L +L Q F A+++H
Sbjct: 227 EGKIGQRWYEVQERERLHAVSQLLNHFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALH 286
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
+ Q +R + +F + + ++ A+D I + +Q +V ++ P+
Sbjct: 287 GDLEQRDRDQVLVQFAN--RSCSVLVATDVAARGIDIAGLQAVINVDVAPDPE 337
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
+LVAT++ RG+DI + V N D+ D + ++HR+ R GR
Sbjct: 308 VLVATDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGR 348
>gi|418966288|ref|ZP_13518034.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
gi|383340413|gb|EID18712.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp.
constellatus SK53]
Length = 514
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T D V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTEDPTVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEDRQTLLFSATMPDAIKQIGVKFMKEPTHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKK 379
>gi|189485761|ref|YP_001956702.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
gi|170287720|dbj|BAG14241.1| DEAD-box ATP-dependent RNA helicase [uncultured Termite group 1
bacterium phylotype Rs-D17]
Length = 543
Score = 160 bits (406), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 150/258 (58%), Gaps = 3/258 (1%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
K + G+DI+ Q+++G GKTA F + L++ + V +++C TRELA Q+++E + FS
Sbjct: 37 KMMTGIDIIGQSQTGTGKTAAFGIPVLEKTNAKNKAVQSVILCPTRELAIQVAEELKLFS 96
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KY I + +GG PIQ+ L + QIV+GTPGR++ + + L L ILDE
Sbjct: 97 KYKKGINIVPVYGGQPIQRQMIAL-SKGAQIVIGTPGRVIDHLERRTLKLDTASIVILDE 155
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML+ + R D++ I +S P +Q + FSAT+ KE + KK+ H P + V E KL
Sbjct: 156 ADEMLD-MGFRDDIELILKSIPEGRQTVFFSATMPKEFLSLTKKYQHSPETIKVVSE-KL 213
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ ++Q+Y +KE++K + L LD+ + ++F + R +++ L + + A +I
Sbjct: 214 TVPSIEQYYFDIKEHQKLEALTRCLDMYDPKLSLVFCNTKKRVDEVTSSLQARGYYADAI 273
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q +R + +F++
Sbjct: 274 HGDMNQSQRNRVMSKFRN 291
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+L+AT++ RG+D++ +++VFN+D+P+D + Y+HR+ R GR G
Sbjct: 296 LLIATDVAARGIDVDGIDMVFNFDVPKDDEDYVHRIGRTGRAG 338
>gi|357637041|ref|ZP_09134916.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
gi|357585495|gb|EHJ52698.1| DEAD/DEAH box helicase [Streptococcus macacae NCTC 11558]
Length = 518
Score = 160 bits (406), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 100/269 (37%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T+ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGRDVIGQAQTGTGKTAAFGLPTLNKIDVTNDKVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
IKV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 G-KKIKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + KFM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISHVPESRQTLLFSATMPDAIKRIGVKFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYVRVKENEKFDTMTRLIDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNDN--LDILVATD 297
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTQVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ +K+
Sbjct: 345 PNEMG--------YLQIIENLTKKRMKGLKPATAQEAFQATKK 379
>gi|326318919|ref|YP_004236591.1| DEAD/DEAH box helicase domain-containing protein [Acidovorax avenae
subsp. avenae ATCC 19860]
gi|323375755|gb|ADX48024.1| DEAD/DEAH box helicase domain protein [Acidovorax avenae subsp.
avenae ATCC 19860]
Length = 478
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 92/293 (31%), Positives = 160/293 (54%), Gaps = 7/293 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+LG D++ QA +G GKTA F LA L++L V LV+C TRELA Q++ E R ++
Sbjct: 52 ALLGRDLIAQASTGSGKTAAFGLALLERLNPRRFAVQALVLCPTRELADQVASEIRRLAR 111
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
NIKV GG+P++ L+ H +VVGTPGR++ + L+L L F+LDE
Sbjct: 112 AQENIKVVTLCGGVPLRGQVASLE-HGAHVVVGTPGRVMDHLERGTLDLGALATFVLDEA 170
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + D+ ++ R P T+Q ++FSAT I + ++FM DP + V +A+
Sbjct: 171 DRMLD-MGFSEDIAQVARRCPDTRQTLLFSATYPDGIERIARQFMKDPQRIAV--QAQHA 227
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q + +++E E+ + +LL+ + F + +C L +L Q F A+++H
Sbjct: 228 EGKIEQRWYEVQERERLHAVSQLLNHFRPESAIAFCNTKQQCRDLVEVLRAQGFSALALH 287
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
+ Q +R + +F + + ++ A+D I + +Q +V ++ P+
Sbjct: 288 GDLEQRDRDQVLVQFAN--RSCSVLVATDVAARGIDIAGLQAVINVDVAPDPE 338
Score = 44.3 bits (103), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 27/41 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
+LVAT++ RG+DI + V N D+ D + ++HR+ R GR
Sbjct: 309 VLVATDVAARGIDIAGLQAVINVDVAPDPEVHIHRIGRTGR 349
>gi|326204124|ref|ZP_08193984.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
gi|325985635|gb|EGD46471.1| DEAD/DEAH box helicase domain protein [Clostridium papyrosolvens
DSM 2782]
Length = 564
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 88/253 (34%), Positives = 146/253 (57%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKT F + ++++++ ++ VLV+C TRELA Q +E KY
Sbjct: 41 GNDLIGQAQTGTGKTCAFGIPAVEKIDSHIDSIQVLVLCPTRELAIQSCEELRNVLKYKD 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I++ +GG PI + LK PQI++GTPGR++ +R K L L LK +LDE D+M
Sbjct: 101 GIRILPVYGGQPIDRQIMALKKR-PQIIIGTPGRVMDHMRRKTLKLESLKMIVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + R D+ I P +Q ++FSAT+ KEI + KK+ DP+ + + + +LT+
Sbjct: 160 L-NMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKDPVHIKIAHK-ELTVPS 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+Y+++KE+ K + L L+D + ++F + R L+ L + F A ++H M
Sbjct: 218 IEQYYLEVKESAKLEVLSRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSAEALHGDM 277
Query: 389 TQEERLKKYQEFK 401
QE R K F+
Sbjct: 278 RQEHRDKVMSLFR 290
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ IL+AT++ RG+D++ V VFNYD+P D + Y+HR+ R GR G
Sbjct: 294 FDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAG 338
>gi|336115431|ref|YP_004570198.1| DEAD/DEAH box helicase [Bacillus coagulans 2-6]
gi|335368861|gb|AEH54812.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 2-6]
Length = 475
Score = 160 bits (406), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 150/254 (59%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F + +++++ N+ +++ TRELA Q+S+E R +Y S
Sbjct: 39 GKDIIGQAQTGTGKTAAFGIPLIEKIDHRSRNIQGIIIAPTRELAIQVSEELYRIGQY-S 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG I + LK H PQI+VGTPGRIL + L L + +LDE D+M
Sbjct: 98 RVHVLAVYGGQDISRQIRALKNH-PQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q M+FSAT+ IR + ++FM++P V V + ++T+
Sbjct: 157 L-NMGFIDDIEAILSTVPKDRQTMLFSATMPDPIRKIAERFMNNPELVRVKAK-EMTVPS 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+Y+K++E EK L LLDV + ++F ++ R L+ L+ + + A IH +
Sbjct: 215 IEQYYIKVQEREKFDVLSRLLDVQSPDLAIVFGRTKRRVDELANALTLRGYLAEGIHGDL 274
Query: 389 TQEERLKKYQEFKD 402
+Q +RL ++FKD
Sbjct: 275 SQAKRLSVLRKFKD 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + + M + + G
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREG-MAMTFVTPREMGY 351
Query: 161 GKT 163
KT
Sbjct: 352 LKT 354
>gi|159109744|ref|XP_001705135.1| ATP-dependent RNA helicase p47, putative [Giardia lamblia ATCC
50803]
gi|157433215|gb|EDO77461.1| ATP-dependent RNA helicase p47, putative [Giardia lamblia ATCC
50803]
Length = 516
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 134/508 (26%), Positives = 218/508 (42%), Gaps = 102/508 (20%)
Query: 11 LSCGSGNVFLFFRAFIR--FSSSFPHSKMADNDDLLDYEDEENTEQ--IVADGAGDALA- 65
LS + F FF F + F S P + + +E+ Q + D GD LA
Sbjct: 41 LSLMACATFAFFCHFNKEFFKSMAPKADKESGKNAAGVSSKESVPQKLVSKDDTGDELAL 100
Query: 66 ---KQKEVKGAYVSIHSSG----------FRDFLLKPEILRAIVDCWRILVATNLFGRGM 112
EV + +G F DF L+ E+L+AI+ +N F
Sbjct: 101 LADTGAEVASGALRQARAGSPRSGALLTRFSDFNLREEVLQAII--------SNGFESPS 152
Query: 113 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQ 172
D++ + I A+ D++CQAKSG GKTAVFVL+ L
Sbjct: 153 DVQSMAI------------------------PPALEHKDVICQAKSGKGKTAVFVLSLLH 188
Query: 173 QL--ETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF--FGGLPIQKDEEYL 228
+ + V LV+C+T ELA QI KE+ RF+ + +IK + GG+ + L
Sbjct: 189 MIDPQAAPHKVQALVLCNTHELAMQIYKEFTRFAINLPDIKDKILCAIGGVTVSLHVRAL 248
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K+ + I VGT GR+ LV L+LS +K+ +LDE D + ++ + + + + P T
Sbjct: 249 KSKDVSIAVGTIGRVSDLVERGALDLSFIKYLVLDEFDALFKEEDNFKKIAGLISKMPAT 308
Query: 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFEL 348
Q ++F+AT ++ + + D + D+ +L L GL Q+Y E +K L +
Sbjct: 309 HQTLLFTATFTEHSEKFARSILRDGYVAILVDDKQLVLTGLMQYYFNAPEEKKLHILLDC 368
Query: 349 LDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD------ 402
L +L F+Q VIF + ++R AL+ L E+ V M ++R + +Q FKD
Sbjct: 369 LRLLPFSQAVIFARDISRVTALNEFLKEEGHECVCFFGKMHHKKREEVFQGFKDKKARIL 428
Query: 403 ------------------------------FHK----------GLAITFASDENDAKILN 422
H+ G+ + F ++++L+
Sbjct: 429 VSTDIFQRGVDFANVNLVIHYDMPDSSDAYLHRSGRAGRFETAGMVLLFVGTAEESEMLS 488
Query: 423 NVQDRFDVSISEL--PDEIDLSTYIEGR 448
+Q RF SI ++ P+EID+ G+
Sbjct: 489 QIQGRFATSIPQVKSPEEIDVKAAFTGK 516
>gi|116333167|ref|YP_794694.1| superfamily II DNA/RNA helicase [Lactobacillus brevis ATCC 367]
gi|116098514|gb|ABJ63663.1| Superfamily II DNA and RNA helicase [Lactobacillus brevis ATCC 367]
Length = 523
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 97/290 (33%), Positives = 160/290 (55%), Gaps = 7/290 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L++++ ++ NV LV+ TRELA Q +E + +
Sbjct: 38 GQDVIGQAQTGTGKTAAFALPILEKIDKSNENVQALVVSPTRELAIQTQEEIYKLGR-TE 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
V V +GG I++ + LK H PQ+VVGTPGR+L +R L L ++ +LDE D+M
Sbjct: 97 RANVQVVYGGADIRRQIKSLKNH-PQVVVGTPGRLLDHIRRHTLKLDHVQMLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+++I + P +Q M+FSAT+ EI+ V +FM DP V + +LT
Sbjct: 156 L-NMGFLDDIEDIIKQLPEERQTMLFSATMPPEIKRVGVQFMKDPKHVKI-KAKELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q YV+ ++ EK + DV + ++F ++ R +++ L + + A IH +
Sbjct: 214 IDQFYVRSRDFEKFDVMTRFFDVQSPDLTIVFTRTKRRVDEIASGLEARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
TQ+ R + +F+ H L I A+D I +N+V ++ I + PD
Sbjct: 274 TQKRRTQIMNDFR--HGKLDILVATDVAARGIDINDVTHVYNYDIPQDPD 321
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HRV R GR G V
Sbjct: 292 ILVATDVAARGIDINDVTHVYNYDIPQDPDSYVHRVGRTGRAGKHGV 338
>gi|358339923|dbj|GAA43007.2| ATP-dependent RNA helicase eIF4A, partial [Clonorchis sinensis]
Length = 387
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/316 (33%), Positives = 165/316 (52%), Gaps = 37/316 (11%)
Query: 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
LKPE+LR I +G G Y+ P A R A
Sbjct: 21 LKPELLRGI------------YGYG-----------YERPS---------AIQQRAIKPA 48
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQ+ + T + LV+ TRELA QI +R Y
Sbjct: 49 IEGRDVIAQAQSGTGKTATFAISLLQRADLTSNQCQALVLAPTRELARQIKLVVQRIGTY 108
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG+ + +D L+ +VVGTPGR+ ++ + L S +K F+LDE D
Sbjct: 109 M-NVRCHTCIGGMSVMQDVATLQ-EGQHVVVGTPGRVFDMMNRRVLTTSAIKIFVLDEAD 166
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + +++I+R P Q+M+ SAT+ +++ V K M DP+++ V E +LTL
Sbjct: 167 EMLSR-GFAEQIKDIYRFLPDDAQIMLLSATMPRDMLEVTKNIMKDPVKILVKKE-ELTL 224
Query: 327 HGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + E + K L +L ++ +QVVIFV +V + AL L +Q F ++
Sbjct: 225 DGIKQFYINVSEEKYKLDTLMDLYGIMHLSQVVIFVNTVRKAEALYNELIKQKFNVSCMN 284
Query: 386 RGMTQEERLKKYQEFK 401
M QEER + E++
Sbjct: 285 SDMDQEERDRVMSEYR 300
Score = 47.0 bits (110), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 32/38 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T++ RG+D+++V++V NYD+P + +TY+HR+
Sbjct: 305 RILLSTDVLARGIDVQQVSLVVNYDLPSNRETYIHRIG 342
>gi|253742308|gb|EES99149.1| ATP-dependent RNA helicase p47, putative [Giardia intestinalis ATCC
50581]
Length = 454
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 122/457 (26%), Positives = 205/457 (44%), Gaps = 87/457 (19%)
Query: 47 EDEENTEQIVADGAGDALA---KQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILV 103
ED + ++AD +A + +Q + F DF +K E+L+AIV
Sbjct: 30 EDAGDELALLADAGAEATSGVLRQARAGSPRSGTLLTRFSDFNIKDEVLQAIV------- 82
Query: 104 ATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKT 163
+N F D++ + I A+ D++CQAKSG GKT
Sbjct: 83 -SNGFESPSDVQSMAI------------------------PPALEHKDVICQAKSGKGKT 117
Query: 164 AVFVLATLQQL--ETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF--FGGL 219
AVFVL+ L + + V L++C+T ELA QI KE+ RF+ + +IK + GG+
Sbjct: 118 AVFVLSLLHMIDPQAAPHKVQALILCNTHELAMQIYKEFARFAINLPDIKDKILCAIGGV 177
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
+ + LK+ + IVVGT GR+ L+ L+LS +K+ +LDE D + ++ + + +
Sbjct: 178 TVSLHVKALKSKDVSIVVGTIGRVSDLMERGALDLSCIKYLVLDEFDALFKEEDNFKKIT 237
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN 339
+ P Q ++F+AT ++ + + D + D+ +L L GL Q+Y E
Sbjct: 238 GLISKMPADHQTLLFTATFTEHSEKFARSILRDGYVAILVDDKQLVLTGLMQYYFDAPEE 297
Query: 340 EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399
+K L + L +L F+Q VIF K ++R AL+ L E+ V M ++R + +Q
Sbjct: 298 KKLHILLDCLRLLPFSQAVIFAKDISRVTALNEFLKEEGHECVCFFGKMHHKKREEVFQG 357
Query: 400 FKD------------------------------------FHK----------GLAITFAS 413
FKD H+ G+ + F
Sbjct: 358 FKDKKARILVSTDIFQRGVDFANVNLVIHYDMPDSSDAYLHRSGRAGRFETAGMVLLFVG 417
Query: 414 DENDAKILNNVQDRFDVSISEL--PDEIDLSTYIEGR 448
++++L+ +Q RF SI ++ P+EID+ T G+
Sbjct: 418 TAEESEMLSQIQGRFATSIPQVQSPEEIDVKTAFTGK 454
>gi|71987143|ref|NP_001022623.1| Protein INF-1, isoform a [Caenorhabditis elegans]
gi|124217|sp|P27639.1|IF4A_CAEEL RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
AltName: Full=ATP-dependent RNA helicase eIF4A; AltName:
Full=Initiation factor 1
gi|6700|emb|CAA78102.1| unnamed protein product [Caenorhabditis elegans]
gi|351062344|emb|CCD70313.1| Protein INF-1, isoform a [Caenorhabditis elegans]
Length = 402
Score = 160 bits (405), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 105/338 (31%), Positives = 170/338 (50%), Gaps = 52/338 (15%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ D +V LVM TRELA QI K +Y+
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+ + GG ++ D+ L+ +VVGTPGR+ ++ L+ S +K F+LDE D+M
Sbjct: 125 NVNILPCIGGTSVRDDQRKLEA-GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + E+FRS P QV++ SAT+ E+ V +FM +P+ + V + +LTL G
Sbjct: 184 LSR-GFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKD-ELTLEG 241
Query: 329 LQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ ++++E K L +L +V+ Q VIF + + L+ ++E F +H
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGD 301
Query: 388 MTQEERLKKYQEFKD------------------------------------FH------- 404
M Q ER +EF+ H
Sbjct: 302 MDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + ENDA+ L ++ + I E+P+ I
Sbjct: 362 FGRKGVAINFVT-ENDARQLKEIESYYTTQIEEMPESI 398
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
>gi|367006737|ref|XP_003688099.1| hypothetical protein TPHA_0M00900 [Tetrapisispora phaffii CBS 4417]
gi|357526406|emb|CCE65665.1| hypothetical protein TPHA_0M00900 [Tetrapisispora phaffii CBS 4417]
Length = 400
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/267 (35%), Positives = 153/267 (57%), Gaps = 4/267 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI
Sbjct: 49 AIQSRAITQIISGTDVIAQAQSGTGKTATFTIGMLQVIDLKRKDLQALILSPTRELATQI 108
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
++ YM N++ GG ++ D + + Q+V GTPGR+L +++ + ++
Sbjct: 109 NQVVTNLGDYM-NVQSYAMTGGKTMKDDLKKMNKSGCQVVSGTPGRVLDMIKRQLISTRN 167
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
++ ILDE D++L E L ++ + EIF P QV++ SAT+SK+I V KKFM DP +
Sbjct: 168 VQMLILDEADELLGEHLGFKQQIYEIFAKLPSACQVVVVSATMSKDIIEVTKKFMSDPTK 227
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + +++L G++Q YV + KE+ K L +L D L Q VIF + + LS L
Sbjct: 228 ILVKRD-EISLEGIKQFYVNVSKEDWKFDTLCDLYDSLTITQCVIFCNTKKKVDWLSQKL 286
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFK 401
+ NF +++H M QE+R K +F+
Sbjct: 287 TRSNFSVIAMHGDMKQEDRDKVMNDFR 313
Score = 68.9 bits (167), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE+ + Y+HR+ R+GRFG K V
Sbjct: 318 RVLISTDVWARGIDVQQVSLVINYDLPENMENYIHRIGRSGRFGRKGV 365
>gi|414563587|ref|YP_006042548.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338846652|gb|AEJ24864.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 538
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ +VVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALKS-GAHVVVGTPGRLLDLIKRKALRLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V V ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPDDRQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDQ--LDILVATD 297
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQLDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|376260079|ref|YP_005146799.1| DNA/RNA helicase [Clostridium sp. BNL1100]
gi|373944073|gb|AEY64994.1| DNA/RNA helicase, superfamily II [Clostridium sp. BNL1100]
Length = 564
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 100/320 (31%), Positives = 165/320 (51%), Gaps = 35/320 (10%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F+D L E+ RAIVD M E + + +P Y+
Sbjct: 6 FKDLTLSDEVQRAIVD--------------MGFEEATPIQSQSIP-----YI-------- 38
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
+ G D++ QA++G GKT F + +++++ ++ VLV+C TRELA Q +E
Sbjct: 39 -----LEGNDLIGQAQTGTGKTCAFGIPAVEKIDPQIDSIQVLVLCPTRELAIQSCEELR 93
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
KY I++ +GG PI + LK PQI++GTPGR++ +R + L L LK +
Sbjct: 94 NVLKYKDGIRILPVYGGQPIDRQIMALKKR-PQIIIGTPGRVMDHMRRRTLKLEALKMIV 152
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + R D+ I P +Q ++FSAT+ KEI + KK+ DP+ + + +
Sbjct: 153 LDEADEML-NMGFREDIDTILEKVPEDRQTILFSATMPKEILELTKKYQKDPVHIKIAHK 211
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+LT+ ++Q+Y+++KE+ K + L L+D + ++F + R L+ L + F A
Sbjct: 212 -ELTVPSIEQYYLEVKESAKLEVLSRLIDTNDIKLSLVFCNTKKRVDELTASLQSRGFSA 270
Query: 382 VSIHRGMTQEERLKKYQEFK 401
++H M QE R K F+
Sbjct: 271 EALHGDMRQEHRDKVMSLFR 290
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 33/45 (73%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ IL+AT++ RG+D++ V VFNYD+P D + Y+HR+ R GR G
Sbjct: 294 FDILIATDVAARGIDVDDVEAVFNYDLPNDEEYYVHRIGRTGRAG 338
>gi|333394485|ref|ZP_08476304.1| putative ATP-dependent RNA helicase [Lactobacillus coryniformis
subsp. coryniformis KCTC 3167]
gi|420145287|ref|ZP_14652757.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
gi|398403063|gb|EJN56338.1| ATP-dependent RNA helicase [Lactobacillus coryniformis subsp.
coryniformis CECT 5711]
Length = 515
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G+D++ QA++G GKTA F LA LQ+++ + NV L++ TRELA Q +E R +
Sbjct: 35 ALTGVDVIGQAQTGTGKTAAFGLAILQKIDLENPNVQALIISPTRELAVQTQEELYRLGQ 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I + LK H PQI+VGTPGR+ + + + L ++ +LDE
Sbjct: 95 D-KKVKVQAVYGGADIGRQIRSLKDH-PQIIVGTPGRLQDHINRRTIRLDHVQVLVLDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + D+++I + P T+Q ++FSAT+ IR + +FMHDP V + + +LT
Sbjct: 153 DEMLD-MGFLEDIEKIVQQVPDTRQTLLFSATIPAAIRKIADRFMHDPKMVQIKAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L Q++V+ KE EK + L DV + ++F ++ R LS L + + A IH
Sbjct: 211 ADLLDQYFVQTKEFEKFDVMTRLFDVQQPELTIVFGRTKRRVDELSKGLRARGYNAEGIH 270
Query: 386 RGMTQEERLKKYQEFK 401
++Q++R+ + FK
Sbjct: 271 GDLSQQKRMSVLRSFK 286
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HRV R R G K
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDVPQDPDSYVHRVGRTARAGHKGT 338
>gi|343525265|ref|ZP_08762220.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
gi|343395535|gb|EGV08073.1| DEAD/DEAH box helicase [Streptococcus constellatus subsp. pharyngis
SK1060 = CCUG 46377]
Length = 514
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T D V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTEDPTVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEDRQTLLFSATMPDAIKQIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + T E AFQ K+
Sbjct: 349 G--------YLQIIESLTKKRMKGMKPATAEEAFQAKKK 379
>gi|157960395|ref|YP_001500429.1| DEAD/DEAH box helicase [Shewanella pealeana ATCC 700345]
gi|157845395|gb|ABV85894.1| DEAD/DEAH box helicase domain protein [Shewanella pealeana ATCC
700345]
Length = 623
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 152/264 (57%), Gaps = 5/264 (1%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DIL QA++G GKT F L L ++ + +LV+ TRELA Q+++ + ++KYM +
Sbjct: 45 DILGQAQTGTGKTGAFALPLLNSIDPNTNAPQILVLAPTRELAVQVAEAFASYAKYMKGL 104
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
V +GG +Q+ L+ PQI+VGTPGR++ +R L L LK +LDE D+ML
Sbjct: 105 HVLPIYGGQSMQQQLNALR-RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEML- 162
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
++ D++ I +P T+Q+ +FSAT+ ++I+ V K++ +P+ V + T+ ++
Sbjct: 163 KMGFIDDIEWILEHTPKTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTS-TVETIE 221
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q +V++ ++ K + L +L+V + ++IFV++ C+ L+ L + + + +H M Q
Sbjct: 222 QRFVQVSQHNKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQ 281
Query: 391 EERLKKYQEFKDFHKGLAITFASD 414
+ R + ++ K L I A+D
Sbjct: 282 QARERAIEQLKRGQ--LDIIIATD 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I++AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 298 IIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRT---GMAIL 347
>gi|227891791|ref|ZP_04009596.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
gi|227866356|gb|EEJ73777.1| ATP-dependent RNA helicase [Lactobacillus salivarius ATCC 11741]
Length = 499
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQQL+ + +++ TRELA Q +E K
Sbjct: 45 GNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKE-K 103
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + L+ H P I+VGTPGR+L ++ +NL+ +KH ILDE D+M
Sbjct: 104 RAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEM 163
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I ++ P +Q ++FSAT+ KEI + +KFM +P V + + +LT
Sbjct: 164 LD-MGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK-ELTTDL 221
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK KE EK + L+DV ++F ++ R LS L + + A IH +
Sbjct: 222 VDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDL 281
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 282 TQQRRMNVLRKFKNGD--LDILVATD 305
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 300 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 342
>gi|149028105|gb|EDL83556.1| HLA-B-associated transcript 1A, isoform CRA_c [Rattus norvegicus]
Length = 189
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 73/97 (75%), Positives = 87/97 (89%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373
ME++VDDE KLTLHGLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ L
Sbjct: 1 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 60
Query: 374 LSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
L EQNFPA++IHRGM QEERL +YQ+FKDF + + +
Sbjct: 61 LVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILVA 97
Score = 81.6 bits (200), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 36/38 (94%), Positives = 37/38 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRV+
Sbjct: 93 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVS 130
>gi|335029349|ref|ZP_08522856.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
gi|334268646|gb|EGL87078.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus infantis
SK1076]
Length = 524
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T D + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIHTEDQTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ + I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPEAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
G LQ +E + T E AFQ K
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKK 378
>gi|374628683|ref|ZP_09701068.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
gi|373906796|gb|EHQ34900.1| DEAD/DEAH box helicase domain protein [Methanoplanus limicola DSM
2279]
Length = 529
Score = 160 bits (404), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 151/254 (59%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI QA++G GKTA F + L+++ T V +V+ TREL QI++E+ R KYM+
Sbjct: 42 GKDITAQAQTGTGKTAAFAIPLLEKINTDKLAVQAIVLAPTRELTIQIAEEFNRLIKYMA 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+I++ +GG PI++ ++ Q+++GTPGR++ + K L++S + +LDE D+M
Sbjct: 102 DIRILPIYGGQPIERQISAMR-RGVQVIIGTPGRVIDHLGRKTLSMSEVNFVVLDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++EI +P +Q ++FSAT+ I + K F H+P V + + LT+
Sbjct: 161 LD-MGFREDLEEILGYAPKERQTVLFSATMPAPILRISKSFQHNPEFVSITPKT-LTVPS 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y++++E+EK L +D+ Q ++F + R LS+++ + + A +H +
Sbjct: 219 IEQFYIEVRESEKADLLCRFIDIKGPGQSIVFCNTKKRVDELSSIMRSRGYFAEGLHGDL 278
Query: 389 TQEERLKKYQEFKD 402
Q++R + +F++
Sbjct: 279 KQQQRDRVMGKFRN 292
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 34/43 (79%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
IL+AT++ RG+D+E + V+NYD+P+D++ Y+HR+ R GR G
Sbjct: 297 ILIATDVAARGIDVEDIETVYNYDVPQDTEYYVHRIGRTGRAG 339
>gi|392947743|ref|ZP_10313371.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
gi|334881219|emb|CCB82055.1| ATP-dependent RNA helicase [Lactobacillus pentosus MP-10]
gi|339637663|emb|CCC16621.1| ATP-dependent RNA helicase [Lactobacillus pentosus IG1]
gi|392437023|gb|EIW14919.1| ATP-dependent RNA helicase [Lactobacillus pentosus KCA1]
Length = 526
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 129 SDTYLHRVARAGRFGTKAVL---------GMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
SD+ L V RAG + G D++ QA++G GKTA F L LQ+L+ +
Sbjct: 9 SDSLLKAVQRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQRLDFNNH 68
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
N+ LV+ TRELA Q +E R K KV V +GG I++ LK NPQ++VGT
Sbjct: 69 NIQALVVSPTRELAIQTQEEIFRLGKD-ERAKVQVVYGGADIRRQIRNLK-QNPQVIVGT 126
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGR+L +R + L +K +LDE D+ML + D++ I + P +Q M+FSAT+
Sbjct: 127 PGRLLDHIRRGTVKLDHVKMLVLDEADEML-NMGFLEDIESIIKQVPDERQTMLFSATMP 185
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
EI+ + +FM +P V + + ++T + Q+YVK KE EK + L DV ++
Sbjct: 186 PEIKRIGVQFMKEPHHVKIKSK-EMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIV 244
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
F ++ R LS L + + A IH ++Q+ R + ++FK
Sbjct: 245 FGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFK 286
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D+ V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|417810743|ref|ZP_12457421.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
gi|335348538|gb|EGM50040.1| ATP-dependent RNA helicase [Lactobacillus salivarius GJ-24]
Length = 499
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQQL+ + +++ TRELA Q +E K
Sbjct: 45 GNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKE-K 103
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + L+ H P I+VGTPGR+L ++ +NL+ +KH ILDE D+M
Sbjct: 104 RAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEM 163
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I ++ P +Q ++FSAT+ KEI + +KFM +P V + + +LT
Sbjct: 164 LD-MGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK-ELTTDL 221
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK KE EK + L+DV ++F ++ R LS L + + A IH +
Sbjct: 222 VDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDL 281
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 282 TQQRRMNVLRKFKN--GDLDILVATD 305
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 300 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 342
>gi|385840089|ref|YP_005863413.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|418961874|ref|ZP_13513758.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
gi|300214210|gb|ADJ78626.1| ATP-dependent RNA helicase [Lactobacillus salivarius CECT 5713]
gi|380343682|gb|EIA32031.1| ATP-dependent RNA helicase [Lactobacillus salivarius SMXD51]
Length = 492
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQQL+ + +++ TRELA Q +E K
Sbjct: 38 GNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKE-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + L+ H P I+VGTPGR+L ++ +NL+ +KH ILDE D+M
Sbjct: 97 RAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I ++ P +Q ++FSAT+ KEI + +KFM +P V + + +LT
Sbjct: 157 LD-MGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK-ELTTDL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK KE EK + L+DV ++F ++ R LS L + + A IH +
Sbjct: 215 VDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDL 274
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 275 TQQRRMNVLRKFKN--GDLDILVATD 298
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 293 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
>gi|90961336|ref|YP_535252.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|417787885|ref|ZP_12435568.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
gi|90820530|gb|ABD99169.1| ATP-dependent RNA helicase [Lactobacillus salivarius UCC118]
gi|334308062|gb|EGL99048.1| cold-shock DEAD-box protein A [Lactobacillus salivarius NIAS840]
Length = 492
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQQL+ + +++ TRELA Q +E K
Sbjct: 38 GNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKE-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + L+ H P I+VGTPGR+L ++ +NL+ +KH ILDE D+M
Sbjct: 97 RAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I ++ P +Q ++FSAT+ KEI + +KFM +P V + + +LT
Sbjct: 157 LD-MGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK-ELTTDL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK KE EK + L+DV ++F ++ R LS L + + A IH +
Sbjct: 215 VDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDL 274
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 275 TQQRRMNVLRKFKN--GDLDILVATD 298
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 293 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
>gi|448820186|ref|YP_007413348.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
gi|448273683|gb|AGE38202.1| ATP-dependent RNA helicase [Lactobacillus plantarum ZJ316]
Length = 528
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 129 SDTYLHRVARAGRFGTKAVL---------GMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
SD+ L V RAG + G D++ QA++G GKTA F L LQ+L+ +
Sbjct: 9 SDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQRLDFDNH 68
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
N+ LV+ TRELA Q +E R K KV V +GG I++ LK NPQ++VGT
Sbjct: 69 NIQALVVSPTRELAIQTQEEIFRLGKD-ERAKVQVVYGGADIRRQIRNLK-QNPQVIVGT 126
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGR+L +R + L +K +LDE D+ML + D++ I + P +Q M+FSAT+
Sbjct: 127 PGRLLDHIRRGTVKLDHVKMLVLDEADEML-NMGFLEDIESIIKQVPDERQTMLFSATMP 185
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
EI+ + +FM +P V + + ++T + Q+YVK KE EK + L DV ++
Sbjct: 186 PEIKRIGVQFMKEPHHVKIKSK-EMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIV 244
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
F ++ R LS L + + A IH ++Q+ R + ++FK
Sbjct: 245 FGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFK 286
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D+ V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|212007716|gb|ACJ22452.1| putative eukaryotic translation initiation factor 4A [Pyropia
yezoensis]
Length = 408
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 106/348 (30%), Positives = 174/348 (50%), Gaps = 37/348 (10%)
Query: 64 LAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNY 123
LA E+ Y +H + F D L+ E+LR I + +
Sbjct: 36 LADGSEITTNYTEVHET-FDDMNLREELLRGIY-----------------------AYGF 71
Query: 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV 183
+ P A R + D + QA+SGMGKTA F + LQ ++T+ V
Sbjct: 72 EKPS---------AIQQRAIMPLIQNRDTIAQAQSGMGKTATFSIGVLQNIDTSVRKVQA 122
Query: 184 LVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI 243
L++ TRELA QI K + S +MS I GG + +D ++ P +VVGTPGR+
Sbjct: 123 LILAPTRELAQQIHKVVQTLSDFMS-ISCHACIGGTRVMEDVRVFQSETPHVVVGTPGRV 181
Query: 244 LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
+++ + L+ +K F LDE D+ML + + + EIF+ P T QV +FSAT+ ++
Sbjct: 182 FDMIQRRALDTGSIKAFCLDEADEMLSR-GFKEQIYEIFQFMPATCQVGLFSATMPDDVL 240
Query: 304 PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVK 362
+ +KFM DP+ + V + +LTL G++Q YV + +E+ K + L +L + L Q +I+
Sbjct: 241 EMTQKFMRDPIRILVKKD-ELTLEGIKQFYVAVEREDWKLETLCDLYETLNITQSIIYTN 299
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+ + L ++E++F S+H M Q++R +EF+ + IT
Sbjct: 300 TRRKVEWLVAKMNERDFTVSSLHGDMDQKDRDIIMREFRTGSTRVLIT 347
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 343 RVLITTDLLARGIDVQQVSLVVNYDLPTNKENYIHRIGRSGRFGRKGV 390
>gi|27652057|gb|AAO17547.1| putative RNA helicase [Giardia intestinalis]
Length = 454
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 115/419 (27%), Positives = 190/419 (45%), Gaps = 84/419 (20%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F DF L+ E+L+AI+ +N F D++ + I
Sbjct: 68 FSDFNLREEVLQAII--------SNGFESPSDVQSMAI---------------------- 97
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHTRELAFQISKE 199
A+ D++CQAKSG GKTAVFVL+ L + + V LV+C+T ELA QI KE
Sbjct: 98 --PPALEHKDVICQAKSGKGKTAVFVLSLLHMIDPQAAPHKVQALVLCNTHELAMQIYKE 155
Query: 200 YERFSKYMSNIKVGVF--FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
+ RF+ + +IK + GG+ + LK+ + I VGT GR+ LV L+LS +
Sbjct: 156 FTRFAINLPDIKDKILCAIGGVTVSLHVRALKSKDVSIAVGTIGRVSDLVERGALDLSFI 215
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K+ +LDE D + ++ + + + + P T Q ++F+AT ++ + + D
Sbjct: 216 KYLVLDEFDALFKEEDNFKKIAGLISKMPATHQTLLFTATFTEHSEKFARSILRDGYVAI 275
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+ D+ +L L GL Q+Y E +K L + L +L F+Q VIF + ++R AL+ L E+
Sbjct: 276 LVDDKQLVLTGLMQYYFNAPEEKKLHILLDCLRLLPFSQAVIFARDISRVTALNEFLKEE 335
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKD----------------------------------- 402
V M ++R + +Q FKD
Sbjct: 336 GHECVCFFGKMHHKKREEVFQGFKDKKARILVSTDIFQRGVDFANVNLVIHYDMPDSSDA 395
Query: 403 -FHK----------GLAITFASDENDAKILNNVQDRFDVSISEL--PDEIDLSTYIEGR 448
H+ G+ + F ++++L+ +Q RF SI ++ P+EID+ G+
Sbjct: 396 YLHRSGRAGRFETAGMVLLFVGTAEESEMLSQIQGRFATSIPQVKSPEEIDVKAAFTGK 454
>gi|254555590|ref|YP_003062007.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300769652|ref|ZP_07079536.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308179612|ref|YP_003923740.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|380031534|ref|YP_004888525.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|418274186|ref|ZP_12889684.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
gi|254044517|gb|ACT61310.1| ATP-dependent RNA helicase [Lactobacillus plantarum JDM1]
gi|300492805|gb|EFK27989.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
plantarum subsp. plantarum ATCC 14917]
gi|308045103|gb|ADN97646.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum ST-III]
gi|342240777|emb|CCC78011.1| ATP-dependent RNA helicase [Lactobacillus plantarum WCFS1]
gi|376009752|gb|EHS83078.1| ATP-dependent RNA helicase [Lactobacillus plantarum subsp.
plantarum NC8]
Length = 528
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 99/282 (35%), Positives = 152/282 (53%), Gaps = 13/282 (4%)
Query: 129 SDTYLHRVARAGRFGTKAVL---------GMDILCQAKSGMGKTAVFVLATLQQLETTDS 179
SD+ L V RAG + G D++ QA++G GKTA F L LQ+L+ +
Sbjct: 9 SDSLLKAVNRAGYEEATPIQAETIPMVLEGKDVIGQAQTGTGKTAAFALPILQRLDFDNH 68
Query: 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239
N+ LV+ TRELA Q +E R K KV V +GG I++ LK NPQ++VGT
Sbjct: 69 NIQALVVSPTRELAIQTQEEIFRLGKD-ERAKVQVVYGGADIRRQIRNLK-QNPQVIVGT 126
Query: 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299
PGR+L +R + L +K +LDE D+ML + D++ I + P +Q M+FSAT+
Sbjct: 127 PGRLLDHIRRGTVKLDHVKMLVLDEADEML-NMGFLEDIESIIKQVPDERQTMLFSATMP 185
Query: 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359
EI+ + +FM +P V + + ++T + Q+YVK KE EK + L DV ++
Sbjct: 186 PEIKRIGVQFMKEPHHVKIKSK-EMTADTVDQYYVKAKEFEKFDIMTRLFDVQAPELTIV 244
Query: 360 FVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
F ++ R LS L + + A IH ++Q+ R + ++FK
Sbjct: 245 FGRTKRRVDELSKGLEARGYNAAGIHGDLSQQRRTQIMRQFK 286
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D+ V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVSGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|270290190|ref|ZP_06196416.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
gi|270281727|gb|EFA27559.1| ATP-dependent RNA helicase DeaD [Pediococcus acidilactici 7_4]
Length = 511
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + + L +K +LDE D M
Sbjct: 97 RAKVQVVYGGADIRRQINALKSH-PQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I +P +Q ++FSAT+ I+ + KFM DP +V V + +LT
Sbjct: 156 LD-MGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y++ KE EK L ++DV V+F ++ R ++ L + + A IH +
Sbjct: 214 VDQYYIRSKEFEKFDMLTRIIDVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ +F+D L I A+D
Sbjct: 274 TQQRRMNILHQFRDGQ--LDILVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|339640657|ref|ZP_08662101.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
gi|339453926|gb|EGP66541.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 056 str. F0418]
Length = 517
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 159/269 (59%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++TT+ V L++ TRELA Q +E RF +
Sbjct: 35 ALAGKDVIGQAQTGTGKTAAFGFPTLEKIDTTNPTVQALIIAPTRELAVQCQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVDQPDLSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|301301069|ref|ZP_07207229.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
gi|300851339|gb|EFK79063.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus salivarius
ACS-116-V-Col5a]
Length = 492
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/266 (36%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQQL+ + +++ TRELA Q +E K
Sbjct: 38 GNDVIGQAQTGTGKTAAFGLPVLQQLDLDLRQIQAVIISPTRELAIQTQEELFHLGKE-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + L+ H P I+VGTPGR+L ++ +NL+ +KH ILDE D+M
Sbjct: 97 RAKVQVVYGGADIRRQIKQLEQHTPHILVGTPGRLLDHIQRGTINLAHVKHLILDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I ++ P +Q ++FSAT+ KEI + +KFM +P V + + +LT
Sbjct: 157 LD-MGFLDDIEKIIQAVPAERQTLLFSATMPKEILKIGEKFMVNPQIVKIKAK-ELTTDL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++VK KE EK + L+DV ++F ++ R LS L + + A IH +
Sbjct: 215 VDQYFVKTKEFEKFDIMTRLIDVQAPELTIVFGRTKRRVDELSRGLEARGYNAAGIHGDL 274
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ ++FK+ L I A+D
Sbjct: 275 TQQRRMNVLRKFKN--GDLDILVATD 298
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 293 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 335
>gi|304385542|ref|ZP_07367886.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|418069818|ref|ZP_12707095.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
gi|304328046|gb|EFL95268.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus
acidilactici DSM 20284]
gi|357536349|gb|EHJ20380.1| superfamily II DNA/RNA helicase [Pediococcus acidilactici MA18/5M]
Length = 511
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + + L +K +LDE D M
Sbjct: 97 RAKVQVVYGGADIRRQINALKSH-PQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I +P +Q ++FSAT+ I+ + KFM DP +V V + +LT
Sbjct: 156 LD-MGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y++ KE EK L ++DV V+F ++ R ++ L + + A IH +
Sbjct: 214 VDQYYIRSKEFEKFDMLTRIIDVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ +F+D L I A+D
Sbjct: 274 TQQRRMNILHQFRDGQ--LDILVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|225868917|ref|YP_002744865.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus]
gi|225702193|emb|CAW99913.1| DEAD box helicase family protein [Streptococcus equi subsp.
zooepidemicus]
Length = 538
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ +VVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALKS-GAHVVVGTPGRLLDLIKRKALRLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V V ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPDHRQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDQ--LDILVATD 297
Score = 56.2 bits (134), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQLDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|427440715|ref|ZP_18924987.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
gi|425787422|dbj|GAC45775.1| DEAD/DEAH box family ATP-dependent RNA helicase [Pediococcus lolii
NGRI 0510Q]
Length = 511
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 95/266 (35%), Positives = 149/266 (56%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F L LQ ++ + N+ +++ TRELA Q E + KY
Sbjct: 38 GKDIIGQAQTGTGKTAAFGLPILQNVDLDNPNIQAIIVSPTRELAAQTQAEIFKLGKY-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ LK+H PQIVVGTPGR+L + + L +K +LDE D M
Sbjct: 97 RAKVQVVYGGADIRRQINALKSH-PQIVVGTPGRLLDHIGRHTIRLDHVKTLVLDEADDM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I +P +Q ++FSAT+ I+ + KFM DP +V V + +LT
Sbjct: 156 LD-MGFLPDIEKIIEQTPSERQTLLFSATMPAPIKKIGVKFMTDPKQVTVKSK-ELTADL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y++ KE EK L ++DV V+F ++ R ++ L + + A IH +
Sbjct: 214 VDQYYIRSKEFEKFDMLTRIIDVQSPKLAVVFGRTKRRVDEVAKGLVARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R+ +F+D L I A+D
Sbjct: 274 TQQRRMNILHQFRDGQ--LDILVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|433448548|ref|ZP_20411442.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Weissella ceti NC36]
gi|429539771|gb|ELA07806.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Weissella ceti NC36]
Length = 528
Score = 159 bits (403), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/267 (35%), Positives = 155/267 (58%), Gaps = 8/267 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++TTD+ LV+ TRELA Q E + +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILEMIDTTDTKPQALVVSPTRELAIQTQDELFKLGRE-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V FGG I++ L+ H IVVGTPGR++ +R ++LS +K ILDE D+M
Sbjct: 97 RVRVQAVFGGADIRRQINGLQ-HGAHIVVGTPGRLIDHIRRGTIDLSQVKTLILDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I ++ P +Q ++FSAT+ I+ + +FM DP+ V + EAK LT
Sbjct: 156 L-NMGFLDDIEAILKAVPDQRQTLLFSATMPPAIKRIGVQFMKDPIHVQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV++KE+EK L +LDV + ++F ++ R L+ L + + A IH
Sbjct: 213 LVEQFYVRVKESEKFDALTRILDVQQPKLAIMFGRTKRRVDELTRGLELRGYKAAGIHGD 272
Query: 388 MTQEERLKKYQEFKDFHKGLAITFASD 414
+TQ++R + ++FK+ L I A+D
Sbjct: 273 LTQQKRSQVLKQFKNHE--LRILVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 36/49 (73%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT++ RG+D+ V+ V+N+D+P+D ++Y+HR+ R GR G +
Sbjct: 290 LRILVATDVAARGLDVSGVDYVYNFDIPQDPESYVHRIGRTGRAGAEGT 338
>gi|349933888|dbj|GAA29169.1| translation initiation factor 4A [Clonorchis sinensis]
Length = 390
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 141/249 (56%), Gaps = 5/249 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
++ G +++ QA+SG GKTA F +A LQQ+ T D LV+ TRELA QI
Sbjct: 51 SIEGRNVIAQAQSGTGKTATFSIAMLQQINTADPRCQALVLAPTRELAKQIQTVVVALGD 110
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM +I GG + D E L+ QIVVGTPGR+L ++R L ++ F+LDE
Sbjct: 111 YM-DITCHACIGGTQVSTDMERLQM-GQQIVVGTPGRVLDMIRRGSLRTDSIRIFVLDEA 168
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + +QEIFR H QV++ SAT+ E+ V K FM DP+ + V E +LT
Sbjct: 169 DEMLS-MGFKDQIQEIFRCLKHDVQVILLSATIPDEVLEVTKHFMVDPVRILVKQE-ELT 226
Query: 326 LHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV +++ E K + L +L + Q VIF + + L+ L+E++F ++
Sbjct: 227 LEGIRQFYVNVEQEEWKLETLCDLYQTIAITQAVIFCNTRRKVEWLTQELTERDFIVSAM 286
Query: 385 HRGMTQEER 393
H M Q ER
Sbjct: 287 HGDMEQAER 295
Score = 43.5 bits (101), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L++T+L RG+D+++V++V N+D+P + Y+HR+
Sbjct: 308 RVLISTDLLARGIDVQQVSLVINFDLPNTLENYIHRIG 345
>gi|167622568|ref|YP_001672862.1| DEAD/DEAH box helicase [Shewanella halifaxensis HAW-EB4]
gi|167352590|gb|ABZ75203.1| DEAD/DEAH box helicase domain protein [Shewanella halifaxensis
HAW-EB4]
Length = 625
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 151/264 (57%), Gaps = 5/264 (1%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DIL QA++G GKT F L L ++ + +LV+ TRELA Q+++ + ++KYM +
Sbjct: 45 DILGQAQTGTGKTGAFALPLLNSIDPNTNAPQILVLAPTRELAVQVAEAFASYAKYMKGL 104
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
V +GG +Q+ L+ PQI+VGTPGR++ +R L L LK +LDE D+ML
Sbjct: 105 HVLPIYGGQSMQQQLNALR-RGPQIIVGTPGRVMDHMRRGTLKLDTLKAMVLDEADEML- 162
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
++ D++ I +P T+Q+ +FSAT+ ++I+ V K++ +P+ V + T+ ++
Sbjct: 163 KMGFIDDIEWILEHTPKTRQLALFSATMPEQIKRVANKYLDNPVHVKIAATTS-TVETIE 221
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q +V++ ++ K + L +L+V + ++IFV++ C+ L+ L + + + +H M Q
Sbjct: 222 QRFVQVSQHNKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQ 281
Query: 391 EERLKKYQEFKDFHKGLAITFASD 414
+ R + + K L I A+D
Sbjct: 282 QARERAIDQLKRGQ--LDIIIATD 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I++AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 298 IIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRT---GMAIL 347
>gi|170725001|ref|YP_001759027.1| DEAD/DEAH box helicase [Shewanella woodyi ATCC 51908]
gi|169810348|gb|ACA84932.1| DEAD/DEAH box helicase domain protein [Shewanella woodyi ATCC
51908]
Length = 605
Score = 159 bits (402), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 84/264 (31%), Positives = 152/264 (57%), Gaps = 5/264 (1%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
DIL QA++G GKT F L L ++ T + +LV+ TRELA Q+++ + +SK+M +
Sbjct: 45 DILGQAQTGTGKTGAFALPLLNSIDPTTNAPQILVLAPTRELAVQVAEAFASYSKFMKGM 104
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
V +GG +Q+ L+ PQI+VGTPGR++ +R L L+ LK +LDE D+ML
Sbjct: 105 HVLPIYGGQSMQQQLNSLR-RGPQIIVGTPGRVMDHMRRGTLKLATLKAMVLDEADEML- 162
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
++ D++ I +P +Q+ +FSAT+ ++I+ V K++ +P+ V + T+ ++
Sbjct: 163 KMGFIDDIEWILEHTPQERQLALFSATMPEQIKRVANKYLDNPVHVKI-AATTTTVETIE 221
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q +V++ ++ K + L +L+V + ++IFV++ C+ L+ L + + + +H M Q
Sbjct: 222 QRFVQVSQHNKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDMNQ 281
Query: 391 EERLKKYQEFKDFHKGLAITFASD 414
+ R + + K L I A+D
Sbjct: 282 QARERAVDQLK--RGKLDIIIATD 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I++AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 298 IIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRT---GMAIL 347
>gi|401684066|ref|ZP_10815949.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
gi|400186371|gb|EJO20583.1| DEAD/DEAH box helicase [Streptococcus sp. BS35b]
Length = 520
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T +S + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEESTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|448519792|ref|XP_003868161.1| Tif translation initiation factor [Candida orthopsilosis Co 90-125]
gi|380352500|emb|CCG22726.1| Tif translation initiation factor [Candida orthopsilosis]
Length = 397
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 109/326 (33%), Positives = 161/326 (49%), Gaps = 39/326 (11%)
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+HS F D LKP I+R I FG G Y+ P
Sbjct: 22 VHS--FDDLNLKPNIVRGI------------FGYG-----------YETPS--------- 47
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
Y+ + V GG + D E K+ QIVVGTPGRI ++ +
Sbjct: 108 KSVITSIGLYL-KVTVHASIGGTSVSDDIEAFKS-GAQIVVGTPGRIFDMIERRYFRTDK 165
Query: 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+K FILDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ +
Sbjct: 166 VKMFILDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRI 224
Query: 317 YVDDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLS 375
V + +LTL G++Q Y+ ++E E K L +L D + Q VIF + ++ L+ L
Sbjct: 225 LVKKD-ELTLEGIKQFYINVEEEEYKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLR 283
Query: 376 EQNFPAVSIHRGMTQEERLKKYQEFK 401
EQ F +IH + Q ER +EF+
Sbjct: 284 EQKFTVSAIHSDLPQGERDTIMKEFR 309
Score = 50.1 bits (118), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 66 KQKEVKGAYVSIHS---SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFN 122
K +E K +IHS G RD ++K R+ RIL++T+L RG+D+++V++V N
Sbjct: 281 KLREQKFTVSAIHSDLPQGERDTIMKE--FRS--GSSRILISTDLLARGIDVQQVSLVIN 336
Query: 123 YDMPEDSDTYLHRVA 137
YD+P + + Y+HR+
Sbjct: 337 YDLPANKENYIHRIG 351
>gi|332027726|gb|EGI67794.1| Eukaryotic initiation factor 4A-III [Acromyrmex echinatior]
Length = 366
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 101/299 (33%), Positives = 158/299 (52%), Gaps = 16/299 (5%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F +A LQ L+T VLV+ TRELA QI K +M
Sbjct: 66 GRDVIAQAQSGTGKTATFSIAILQSLDTQVRETQVLVLSPTRELATQIQKVILALGDFM- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ +++ + L +K +LDE D+M
Sbjct: 125 NVQCHACIGGTNLGEDIRKLD-YGQHVVSGTPGRVFDMIKRRVLRTRAIKMLVLDESDEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 184 LNK-GFKEQIYDVYRYLPPATQVVLVSATLPHEILEMTSKFMTDPIRILVKRD-ELTLEG 241
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V + +E K L +L D L Q VIF + + L+ + E NF S+H
Sbjct: 242 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVCSMHGD 301
Query: 388 MTQEERLKKYQEFKDFH----------KGLAITFASDENDAKILNNVQDRFDVSISELP 436
M Q+ER +EF+ KG++I F +D +IL +++ + I E+P
Sbjct: 302 MPQKERDNIMKEFRSGQRIGRSGRFGRKGVSINFVK-TDDIRILRDIEQYYSTQIDEMP 359
>gi|254577069|ref|XP_002494521.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
gi|238937410|emb|CAR25588.1| ZYRO0A03476p [Zygosaccharomyces rouxii]
Length = 399
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/272 (35%), Positives = 154/272 (56%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ LE ++ LV+ TRELA Q +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGMLQVLELKRKDLQALVLSPTRELASQSCQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
Y+ N+K GG ++ D + +++ +V GTPGR+L L++ + + ++
Sbjct: 112 SNLGDYL-NVKAFALTGGKALKDDLKRIQSSGCHVVSGTPGRVLDLIKRQVVQTRNVQVL 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P QV++ SAT+S++I V KKFM DP+++ V
Sbjct: 171 VLDEADELLSETLGFKQQIYDIFARLPPGCQVVVVSATMSRDILEVTKKFMSDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G+ Q+YV + KE K L +L D L Q VIF + + LS L + N
Sbjct: 231 RD-EISLEGISQYYVDVSKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSKKLIQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QE+R K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEDRDKVMNDFRTGHSRVLIS 321
Score = 67.8 bits (164), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D++++++V NYDMPE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQISLVINYDMPEIMENYIHRIGRSGRFGRKGV 364
>gi|77413593|ref|ZP_00789780.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
gi|77160359|gb|EAO71483.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
agalactiae 515]
Length = 528
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHVVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEARQTLLFSATMPDPIKRIGVKFMKNPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|150390823|ref|YP_001320872.1| DEAD/DEAH box helicase [Alkaliphilus metalliredigens QYMF]
gi|149950685|gb|ABR49213.1| DEAD/DEAH box helicase domain protein [Alkaliphilus metalliredigens
QYMF]
Length = 529
Score = 159 bits (402), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 85/255 (33%), Positives = 153/255 (60%), Gaps = 3/255 (1%)
Query: 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
+G DI+ QA++G GKTA F + ++++ + V +L+M TREL+ Q++ E ++FS ++
Sbjct: 40 MGKDIIGQAQTGTGKTAAFGIPMIERVNPKNKAVQILIMAPTRELSVQVADEIQKFSNHV 99
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
+K +GG PI + LK QI+VGTPGRIL + K L L + +LDE D+
Sbjct: 100 IGVKTLAIYGGQPISTQIKALK-RGVQIIVGTPGRILDHINRKTLKLGEVIGVVLDEADQ 158
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+ + + D++ I + +P +Q MFSAT+S+EI + +K+M P ++ V +A LT+
Sbjct: 159 MLD-MGFQEDMEAILKETPTERQTAMFSATISREIERIAQKYMKQPEKIMVAQKA-LTVP 216
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q+Y ++K +EK + L +LD+ + + +IF ++ L+ L + + A +IH
Sbjct: 217 QISQYYFEVKPHEKVEALCRILDMDKTDLGIIFCRTKRSVDELTEKLQNRGYSAAAIHGD 276
Query: 388 MTQEERLKKYQEFKD 402
+ Q +R + ++F++
Sbjct: 277 LKQTQRDRVMKKFRN 291
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+D+ V +V NYD+PED + Y+HR+ R GR G + V
Sbjct: 296 LLVATDVAARGIDVNDVEMVMNYDIPEDFEYYVHRIGRTGRAGKEGV 342
>gi|449933031|ref|ZP_21803081.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
gi|449160654|gb|EMB63903.1| ATP-dependent RNA helicase [Streptococcus mutans 3SN1]
Length = 517
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 159/269 (59%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ + Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TYLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|423068160|ref|ZP_17056948.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
gi|355367051|gb|EHG14764.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0395]
Length = 514
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T D V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTEDPTVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEDRQTLLFSATMPDAIKCIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKK 379
>gi|198430288|ref|XP_002129439.1| PREDICTED: similar to eukaryotic translation initiation factor 4A
[Ciona intestinalis]
Length = 430
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 147/263 (55%), Gaps = 4/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ + LV+ TRELA QI K Y S
Sbjct: 93 GKDVIAQAQSGTGKTATFAISVLQKIDASLKQTQALVIAPTRELAQQIQKVVMALGDYES 152
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I GG ++ + + +T+ PQIVVGTPGR+ ++ K L+ S +K F+LDE D+M
Sbjct: 153 -IHCHACIGGTSVRTEIQVFQTNPPQIVVGTPGRVFDMINRKYLDTSKVKMFVLDEADEM 211
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + EIFR+ P T QV++ SAT+ ++ V FM DP+ + V E +LTL G
Sbjct: 212 LSR-GFKDQIYEIFRTMPATIQVILLSATMPTDVLDVTTCFMPDPIRILVKKE-ELTLEG 269
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+QQ YV + KE K L +L + L Q VIF + + L+ L ++F ++H
Sbjct: 270 IQQFYVFVEKEEWKLDTLCDLYETLTITQAVIFSNTRRKVDWLTEELQRRDFTVSALHGD 329
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q +R +EF+ + IT
Sbjct: 330 MDQGDREVIMREFRSGSSRVLIT 352
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 348 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 385
>gi|366090606|ref|ZP_09456972.1| ATP-dependent RNA helicase [Lactobacillus acidipiscis KCTC 13900]
Length = 503
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 92/251 (36%), Positives = 148/251 (58%), Gaps = 4/251 (1%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ QA++G GKTA F L +Q ++T+ + +++ TRELA Q +E R SK
Sbjct: 40 DVIGQAQTGTGKTAAFGLPIIQNIDTSKRQIQAVIISPTRELAIQTQEELFRLSKDKHG- 98
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV V +GG I++ + LK + PQI+VGTPGR+L +R K ++LS ++ +LDE D+ML+
Sbjct: 99 KVQVVYGGADIRRQIQNLK-NAPQILVGTPGRLLDHIRRKTVDLSHVRSLVLDEADEMLD 157
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ D++ I S P +Q ++FSAT+ K+I + +KFM DP V + + +LT +
Sbjct: 158 -MGFLEDIESIISSVPKERQTLLFSATIPKQILKIGEKFMTDPSVVKIKSK-ELTTDLVD 215
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YVK +E EK + ++DV +IF ++ R LS L + + A IH +TQ
Sbjct: 216 QYYVKAREFEKFDTMTRIIDVQAPELTIIFGRTKRRVDELSKGLEARGYNAAGIHGDLTQ 275
Query: 391 EERLKKYQEFK 401
+ R+ +FK
Sbjct: 276 QRRMTIMNKFK 286
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGHHGV 338
>gi|385262989|ref|ZP_10041086.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
gi|385188964|gb|EIF36434.1| DEAD/DEAH box helicase [Streptococcus sp. SK643]
Length = 525
Score = 159 bits (401), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIHTEDATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|223997764|ref|XP_002288555.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220975663|gb|EED93991.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 369
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 149/256 (58%), Gaps = 5/256 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D++ Q++SG GKTAVF +++LQ L+ ++ VL++ TRELA Q + +
Sbjct: 31 VCGRDVIAQSQSGTGKTAVFSISSLQLLDERSNDPQVLILSPTRELAEQTQRVVSSLGDF 90
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N+K GG + +D + L+ Q++ GTPGR+ L++ L LK FI+DE D
Sbjct: 91 M-NVKCHACIGGKSLGEDRKVLQ-QGVQVLSGTPGRVYDLIKRGDLTTRALKAFIIDEAD 148
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +I+R P QV++ SATL E+ + +KFM+DP+ + V + +LTL
Sbjct: 149 EMLNK-GFKEQIYDIYRYLPPQTQVVLVSATLPVEVLEMTRKFMNDPIRILVKRD-ELTL 206
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V + KE K L +L D L Q VIF + + L+T + E NF ++H
Sbjct: 207 EGIKQFFVSVEKEEWKFDTLCDLYDTLTVTQAVIFCNTKQKVDWLATKMRESNFTVAAMH 266
Query: 386 RGMTQEERLKKYQEFK 401
MTQ+ER K ++F+
Sbjct: 267 GDMTQDERDKVMEDFR 282
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT+L+GRG+D+++V++V YD+P + + Y+HR+ R+GRFG K V
Sbjct: 287 RVLIATDLWGRGIDVQQVSLVICYDLPTNRELYIHRIGRSGRFGRKGV 334
>gi|195977782|ref|YP_002123026.1| ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195974487|gb|ACG62013.1| probable ATP-dependent RNA helicase Exp9 [Streptococcus equi subsp.
zooepidemicus MGCS10565]
Length = 538
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ +VVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALKS-GAHVVVGTPGRLLDLIKRKALRLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V V ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPDHRQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDQ--LDILVATD 297
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQLDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|450030943|ref|ZP_21833495.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
gi|449192085|gb|EMB93521.1| ATP-dependent RNA helicase [Streptococcus mutans G123]
Length = 517
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNYVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|341896005|gb|EGT51940.1| hypothetical protein CAEBREN_19695 [Caenorhabditis brenneri]
Length = 402
Score = 159 bits (401), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 104/338 (30%), Positives = 172/338 (50%), Gaps = 52/338 (15%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ D +V LVM TRELA QI K +Y+
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+ + GG ++ D+ L+ + +VVGTPGR+ ++ L+ S +K F+LDE D+M
Sbjct: 125 NVNILPCIGGTSVRDDQRKLE-NGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + E+FRS P QV++ SAT+ E+ V ++FM +P+ + V + +LTL G
Sbjct: 184 LSR-GFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTERFMRNPIRILVKKD-ELTLEG 241
Query: 329 LQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ ++++E K L +L +V+ Q VIF + + L+ ++ + F +H
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDQLTEQMTAKQFTVSCLHGD 301
Query: 388 MTQEERLKKYQEFKD------------------------------------FH------- 404
M Q ER +EF+ H
Sbjct: 302 MDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + ENDA+ L ++ + I E+P+ I
Sbjct: 362 FGRKGVAINFVT-ENDARQLKEIETYYTTQIEEMPESI 398
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
>gi|421532550|ref|ZP_15978908.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
gi|403642219|gb|EJZ03081.1| DEAD-box ATP dependent DNA helicase [Streptococcus agalactiae
STIR-CD-17]
Length = 516
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + L++ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIHTEDNTIQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ P +VVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRSGAP-VVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEARQTLLFSATMPDPIKRIGVKFMKDPEHVKI-KATELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KENEK + L+DV + ++F ++ L+ L + F A IH
Sbjct: 211 NVNVDQYYVRVKENEKFDTMTCLMDVDQPELSIVFGRTKRLVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ H + I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDH--IDILVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 288 DHIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|293364998|ref|ZP_06611715.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
gi|291316448|gb|EFE56884.1| ATP-dependent RNA helicase [Streptococcus oralis ATCC 35037]
Length = 524
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|262283179|ref|ZP_06060946.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
gi|262261431|gb|EEY80130.1| DEAD-box ATP dependent DNA helicase [Streptococcus sp. 2_1_36FAA]
Length = 523
Score = 158 bits (400), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V LV+ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|259500990|ref|ZP_05743892.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|302190561|ref|ZP_07266815.1| DEAD-box ATP-dependent RNA helicase [Lactobacillus iners AB-1]
gi|309803755|ref|ZP_07697841.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|309804668|ref|ZP_07698733.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|309806978|ref|ZP_07700960.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|309808565|ref|ZP_07702461.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|309809614|ref|ZP_07703471.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|312871555|ref|ZP_07731648.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|312872588|ref|ZP_07732656.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|312874281|ref|ZP_07734313.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|312874733|ref|ZP_07734752.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|315653950|ref|ZP_07906866.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325912398|ref|ZP_08174793.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325913097|ref|ZP_08175467.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|329920540|ref|ZP_08277272.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|349611847|ref|ZP_08891077.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
gi|259167684|gb|EEW52179.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners DSM 13335]
gi|308164164|gb|EFO66425.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 11V1-d]
gi|308166060|gb|EFO68278.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 09V1-c]
gi|308166598|gb|EFO68795.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 03V1-b]
gi|308168193|gb|EFO70315.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners
LactinV 01V1-a]
gi|308170095|gb|EFO72131.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
2503V10-D]
gi|311089478|gb|EFQ47903.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2053A-b]
gi|311090154|gb|EFQ48566.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2052A-d]
gi|311091950|gb|EFQ50326.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
2062A-h1]
gi|311092950|gb|EFQ51301.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners LEAF
3008A-a]
gi|315488646|gb|EFU78292.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
iners ATCC 55195]
gi|325475740|gb|EGC78911.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
143-D]
gi|325477518|gb|EGC80660.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners UPII
60-B]
gi|328936216|gb|EGG32669.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus iners SPIN
1401G]
gi|348608312|gb|EGY58297.1| hypothetical protein HMPREF1027_00504 [Lactobacillus sp. 7_1_47FAA]
Length = 487
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 99/266 (37%), Positives = 152/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ L+ + L++ TRELA Q +E R +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILQTLDKKQEGIQALIIEPTRELAIQTQEELFRLGRD-E 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V V +GG I++ LK P I+VGTPGR+L ++ + +NLS LKH ILDE D+M
Sbjct: 97 NAHVQVVYGGADIRRQIRSLK-QVPNILVGTPGRLLDHLKRRTINLSHLKHVILDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + +D++ I + + Q ++FSAT+ K I + +KFMHDP V + + +LT +
Sbjct: 156 LD-MGFIQDIESILTFASNDHQTLLFSATMPKPILQIGEKFMHDPQIVQIKSK-ELTANL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q++V+LKENEK L L+DV + V+F ++ R L+ + + A IH +
Sbjct: 214 IDQYFVRLKENEKFDILCRLIDVQDPELSVVFGRTKRRVDELTRGFQARGYDAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ +R+ + FK L I A+D
Sbjct: 274 TQTKRMSVLKRFK--QGKLDILVATD 297
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 37/52 (71%), Gaps = 3/52 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
ILVAT++ RG+DI V+ V+NYD+P+D D+Y+HR+ R GR G GM I
Sbjct: 292 ILVATDVAARGLDISGVSHVYNYDIPQDPDSYVHRIGRTGRAGKN---GMSI 340
>gi|440798314|gb|ELR19382.1| DEAD/DEAH box helicase/helicase conserved Cterminal domain
containing protein [Acanthamoeba castellanii str. Neff]
Length = 369
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 93/258 (36%), Positives = 146/258 (56%), Gaps = 5/258 (1%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+ + G D++ QA+SG GKTA F ++ LQ+++TT L++ TRELA QI K
Sbjct: 29 QVIKGRDVIAQAQSGTGKTATFSISALQRIDTTSKEPQALILSPTRELASQIQKVVYSLG 88
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+M N+K V GG I +D L+ QIV GTPGR+ ++R + L +K ILDE
Sbjct: 89 SFM-NVKCHVCIGGTNIGEDTRKLEA-GAQIVSGTPGRVFDMIRRRSLRTRSIKMLILDE 146
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML + + + +++R P QV++ SATL E+ + KFM+DP+ + V + +L
Sbjct: 147 ADEMLSR-GFKEQIYDVYRHLPPATQVVLVSATLPHEVLEMTTKFMNDPIRILVKRD-EL 204
Query: 325 TLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
TL G++Q +V + KE K + L +L D L Q VIF + + L+ + + NF V+
Sbjct: 205 TLEGIKQFFVAVEKEEWKFETLCDLYDTLTITQAVIFCNTRRKVDWLTEKMRKVNFTVVA 264
Query: 384 IHRGMTQEERLKKYQEFK 401
+H M Q ER + +F+
Sbjct: 265 MHGAMEQSERDEIMTQFR 282
Score = 67.4 bits (163), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+ +V++V NYD+P D + YLHR+ R+GRFG K V
Sbjct: 287 RVLITTDIWARGIDVSQVSLVINYDLPNDRELYLHRIGRSGRFGRKGV 334
>gi|313885567|ref|ZP_07819317.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
gi|312619297|gb|EFR30736.1| DEAD-box ATP-dependent RNA helicase CshA [Eremococcus coleocola
ACS-139-V-Col8]
Length = 526
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/254 (36%), Positives = 150/254 (59%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ L+T + L++ TRELA Q+ E SK +
Sbjct: 38 GRDLVGQAQTGTGKTAAFGLPMLQGLDTDHRALQALIIAPTRELAIQVHDELYSLSKGLK 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV +GG I K + ++ PQ++VGTPGR+L L+R + ++ S LK I+DE D+M
Sbjct: 98 T-KVYAVYGGYSIGKQIDRIQKLKPQVIVGTPGRLLDLMRRQIIDTSYLKTLIMDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +P ++Q +MFSAT+ K ++ + ++F+ P EV + EAK LT
Sbjct: 157 LN-MGFIEDIKAIVEQTPSSRQTLMFSATMPKSVQNLAQQFLTQPAEVKI--EAKHLTAD 213
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++VK +++EK L +LD+ ++ +IF ++ R + LS + + A IH
Sbjct: 214 LIDQYFVKCRDSEKFDILTRMLDIESPDKAIIFARTKKRVDEIGRGLSLRGYDAELIHGD 273
Query: 388 MTQEERLKKYQEFK 401
+TQ++R + EFK
Sbjct: 274 VTQQKRTQVMNEFK 287
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 34/46 (73%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+LVAT++ RG+D+ V V+NYD+P+D ++Y+HR+ R GR G +
Sbjct: 293 LLVATDVAARGIDVSGVTHVYNYDIPQDPESYVHRIGRTGRAGNEG 338
>gi|308160100|gb|EFO62606.1| ATP-dependent RNA helicase p47, putative [Giardia lamblia P15]
Length = 454
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 116/419 (27%), Positives = 190/419 (45%), Gaps = 84/419 (20%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F DF LK E+L+AI+ +N F D++ + I
Sbjct: 68 FSDFNLKEEVLQAII--------SNGFESPSDVQSMAI---------------------- 97
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVYVLVMCHTRELAFQISKE 199
A+ D++CQAKSG GKTAVFVL+ L + + V LV+C+T ELA QI KE
Sbjct: 98 --PPALEHKDVICQAKSGKGKTAVFVLSLLHMIDPQAAPHKVQALVLCNTHELAMQIYKE 155
Query: 200 YERFSKYMSNIKVGVF--FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
+ RF+ + +IK + GG+ + LK+ + I VGT GR+ LV L+LS +
Sbjct: 156 FTRFAINLPDIKDKMLCAIGGVTVSLHVRALKSKDVSIAVGTIGRVSDLVERGALDLSSI 215
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
K+ +LDE D + ++ + + + + P T Q ++F+AT ++ + + D
Sbjct: 216 KYLVLDEFDALFKEEDNFKKIAGLISKMPATHQTLLFTATFTEHSEKFARSILRDGYVAI 275
Query: 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+ D+ +L L GL Q+Y E +K L + L +L F+Q VIF + ++R AL+ L E+
Sbjct: 276 LVDDKQLVLTGLMQYYFDAPEEKKLHILLDCLRLLPFSQAVIFARDISRVTALNEFLKEE 335
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKD----------------------------------- 402
V M ++R + +Q FKD
Sbjct: 336 GHECVCFFGKMHHKKREEVFQGFKDKKARILVSTDIFQRGVDFANVNLVIHYDMPDSSDA 395
Query: 403 -FHK----------GLAITFASDENDAKILNNVQDRFDVSISEL--PDEIDLSTYIEGR 448
H+ G+ + F ++++L+ +Q RF SI ++ P+EID+ G+
Sbjct: 396 YLHRSGRAGRFETAGMVLLFVGTAEESEMLSQIQGRFATSIPQVQSPEEIDVKAAFTGK 454
>gi|268573672|ref|XP_002641813.1| C. briggsae CBR-INF-1 protein [Caenorhabditis briggsae]
Length = 402
Score = 158 bits (400), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 172/338 (50%), Gaps = 52/338 (15%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ +D +V LVM TRELA QI K +Y+
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHSDPHVQALVMAPTRELAQQIQKVMSALGEYL- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+ + GG ++ D+ L+ + +VVGTPGR+ ++ L+ S +K F+LDE D+M
Sbjct: 125 NVNILPCIGGTSVRDDQRKLE-NGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + ++FRS P QV++ SAT+ E+ V +FM +P+ + V + +LTL G
Sbjct: 184 LSR-GFKDQIYDVFRSMPQDVQVVLLSATMPAEVLDVTDRFMRNPIRILVKKD-ELTLEG 241
Query: 329 LQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ ++++E K L +L +V+ Q VIF + + L+ ++ + F +H
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDQLTEQMTSKQFTVSCLHGD 301
Query: 388 MTQEERLKKYQEFKD------------------------------------FH------- 404
M Q ER +EF+ H
Sbjct: 302 MDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + ENDA+ L ++ + I E+P+ I
Sbjct: 362 FGRKGVAINFVT-ENDARQLKEIETYYTTQIEEMPESI 398
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
>gi|419778066|ref|ZP_14303968.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
gi|383187819|gb|EIC80263.1| DEAD/DEAH box helicase [Streptococcus oralis SK10]
Length = 525
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|331266806|ref|YP_004326436.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
gi|326683478|emb|CBZ01096.1| ATP-dependent RNA helicase [Streptococcus oralis Uo5]
Length = 525
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|450121873|ref|ZP_21866488.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
gi|449228714|gb|EMC28070.1| ATP-dependent RNA helicase [Streptococcus mutans ST6]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/103 (35%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V ++NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHIYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|449910781|ref|ZP_21794880.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
gi|449259079|gb|EMC56625.1| ATP-dependent RNA helicase [Streptococcus mutans OMZ175]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|449889270|ref|ZP_21787529.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
gi|450039476|ref|ZP_21836209.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449200387|gb|EMC01417.1| ATP-dependent RNA helicase [Streptococcus mutans T4]
gi|449250267|gb|EMC48338.1| ATP-dependent RNA helicase [Streptococcus mutans SA41]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|450003648|ref|ZP_21826168.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
gi|449182133|gb|EMB84176.1| ATP-dependent RNA helicase [Streptococcus mutans N29]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|449921723|ref|ZP_21799071.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
gi|449156658|gb|EMB60119.1| ATP-dependent RNA helicase [Streptococcus mutans 1SM1]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|24379088|ref|NP_721043.1| ATP-dependent RNA helicase, DEAD-box family [Streptococcus mutans
UA159]
gi|387786557|ref|YP_006251653.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449868045|ref|ZP_21779892.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
gi|449873594|ref|ZP_21781776.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449900440|ref|ZP_21791449.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449905661|ref|ZP_21793153.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449987637|ref|ZP_21820439.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|450054177|ref|ZP_21841677.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|450064682|ref|ZP_21845431.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|450074791|ref|ZP_21849420.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|450084208|ref|ZP_21853214.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|450103709|ref|ZP_21859410.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|450108165|ref|ZP_21861307.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|450161259|ref|ZP_21880452.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|450172283|ref|ZP_21884450.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|450178263|ref|ZP_21886619.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|24376988|gb|AAN58349.1|AE014905_2 putative ATP-dependent RNA helicase, DEAD-box family [Streptococcus
mutans UA159]
gi|379132958|dbj|BAL69710.1| ATP-dependent RNA helicase [Streptococcus mutans LJ23]
gi|449153879|gb|EMB57510.1| ATP-dependent RNA helicase [Streptococcus mutans 8ID3]
gi|449175876|gb|EMB78251.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM2]
gi|449197934|gb|EMB99072.1| ATP-dependent RNA helicase [Streptococcus mutans NFSM1]
gi|449203267|gb|EMC04138.1| ATP-dependent RNA helicase [Streptococcus mutans NLML5]
gi|449208651|gb|EMC09229.1| ATP-dependent RNA helicase [Streptococcus mutans M2A]
gi|449212021|gb|EMC12405.1| ATP-dependent RNA helicase [Streptococcus mutans N66]
gi|449217050|gb|EMC17127.1| ATP-dependent RNA helicase [Streptococcus mutans SF1]
gi|449220963|gb|EMC20781.1| ATP-dependent RNA helicase [Streptococcus mutans SF14]
gi|449238898|gb|EMC37638.1| ATP-dependent RNA helicase [Streptococcus mutans 66-2A]
gi|449242989|gb|EMC41471.1| ATP-dependent RNA helicase [Streptococcus mutans SM1]
gi|449243022|gb|EMC41497.1| ATP-dependent RNA helicase [Streptococcus mutans SM4]
gi|449257367|gb|EMC55046.1| ATP-dependent RNA helicase [Streptococcus mutans R221]
gi|449258022|gb|EMC55626.1| ATP-dependent RNA helicase [Streptococcus mutans M230]
gi|449263316|gb|EMC60715.1| ATP-dependent RNA helicase [Streptococcus mutans U2B]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|450047104|ref|ZP_21839304.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
gi|449197930|gb|EMB99069.1| ATP-dependent RNA helicase [Streptococcus mutans N34]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|397649329|ref|YP_006489856.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449878432|ref|ZP_21783625.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449895693|ref|ZP_21789519.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
gi|449917524|ref|ZP_21797265.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449938016|ref|ZP_21804845.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449945061|ref|ZP_21806953.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449966513|ref|ZP_21812374.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449977205|ref|ZP_21816455.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449980880|ref|ZP_21817468.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449992425|ref|ZP_21822308.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449998174|ref|ZP_21824217.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|450011428|ref|ZP_21829171.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|450026596|ref|ZP_21831935.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|450078617|ref|ZP_21851083.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|450116641|ref|ZP_21864588.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|450156792|ref|ZP_21878776.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|450183346|ref|ZP_21888598.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|392602898|gb|AFM81062.1| ATP-dependent RNA helicase [Streptococcus mutans GS-5]
gi|449148200|gb|EMB52105.1| ATP-dependent RNA helicase [Streptococcus mutans 11A1]
gi|449154166|gb|EMB57774.1| ATP-dependent RNA helicase [Streptococcus mutans 15JP3]
gi|449163543|gb|EMB66645.1| ATP-dependent RNA helicase [Streptococcus mutans 2ST1]
gi|449170036|gb|EMB72776.1| ATP-dependent RNA helicase [Streptococcus mutans 15VF2]
gi|449174867|gb|EMB77327.1| ATP-dependent RNA helicase [Streptococcus mutans 11VS1]
gi|449176330|gb|EMB78682.1| ATP-dependent RNA helicase [Streptococcus mutans 5SM3]
gi|449179705|gb|EMB81898.1| ATP-dependent RNA helicase [Streptococcus mutans NVAB]
gi|449181162|gb|EMB83284.1| ATP-dependent RNA helicase [Streptococcus mutans A9]
gi|449189536|gb|EMB91191.1| ATP-dependent RNA helicase [Streptococcus mutans A19]
gi|449189635|gb|EMB91281.1| ATP-dependent RNA helicase [Streptococcus mutans U138]
gi|449209834|gb|EMC10332.1| ATP-dependent RNA helicase [Streptococcus mutans N3209]
gi|449226812|gb|EMC26299.1| ATP-dependent RNA helicase [Streptococcus mutans ST1]
gi|449235283|gb|EMC34247.1| ATP-dependent RNA helicase [Streptococcus mutans 21]
gi|449243483|gb|EMC41906.1| ATP-dependent RNA helicase [Streptococcus mutans 24]
gi|449249495|gb|EMC47615.1| ATP-dependent RNA helicase [Streptococcus mutans S1B]
gi|449254168|gb|EMC52091.1| ATP-dependent RNA helicase [Streptococcus mutans SF12]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|450112586|ref|ZP_21863225.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
gi|449221937|gb|EMC21684.1| ATP-dependent RNA helicase [Streptococcus mutans SM6]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GRSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|450037665|ref|ZP_21835841.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
gi|449192015|gb|EMB93458.1| ATP-dependent RNA helicase [Streptococcus mutans M21]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GRSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|418975118|ref|ZP_13523027.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
gi|383348489|gb|EID26448.1| DEAD/DEAH box helicase [Streptococcus oralis SK1074]
Length = 515
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|449952218|ref|ZP_21808893.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
gi|449165426|gb|EMB68434.1| ATP-dependent RNA helicase [Streptococcus mutans 11SSST2]
Length = 517
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPTTAQEAFQASKK 379
>gi|419782961|ref|ZP_14308757.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
gi|383182695|gb|EIC75245.1| DEAD/DEAH box helicase [Streptococcus oralis SK610]
Length = 520
Score = 158 bits (399), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|401626351|gb|EJS44301.1| fal1p [Saccharomyces arboricola H-6]
Length = 399
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 90/272 (33%), Positives = 156/272 (57%), Gaps = 4/272 (1%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI +
Sbjct: 52 RAITQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVV 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
YM N+ GG ++ D + ++ + ++ GTPGR+L +++ + L ++
Sbjct: 112 TNLGDYM-NVNAYAMTGGKTLKDDLKKIQKNGCHVISGTPGRVLDMIKRQMLQTRNVQML 170
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L + L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V
Sbjct: 171 VLDEADELLSDTLGFKQQIYDIFTKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVK 230
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L G++Q+ V + KE K L ++ D L Q VIF + + LS L++ N
Sbjct: 231 RD-EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLTQSN 289
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
F VS+H M QEER K +F+ H + I+
Sbjct: 290 FAVVSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 66.6 bits (161), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>gi|336312904|ref|ZP_08567849.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
gi|335863516|gb|EGM68660.1| cold-shock DEAD-box protein A [Shewanella sp. HN-41]
Length = 631
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L LK +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V + + P+ V ++ ++ T+
Sbjct: 161 L-KMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIES-SQTTVES 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V ++IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + ++ K L I A+D
Sbjct: 279 NQQARERAVEQLK--RGKLDILIATD 302
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGR---TGMAIL 346
>gi|406588887|ref|ZP_11063373.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|419814746|ref|ZP_14339501.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
gi|419817514|ref|ZP_14341672.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404465849|gb|EKA11235.1| ATP-dependent RNA helicase [Streptococcus sp. GMD4S]
gi|404466056|gb|EKA11416.1| ATP-dependent RNA helicase [Streptococcus sp. GMD1S]
gi|404471161|gb|EKA15716.1| ATP-dependent RNA helicase [Streptococcus sp. GMD2S]
Length = 525
Score = 158 bits (399), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +ET + T E AFQ K+
Sbjct: 349 G--------YLQIIETLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|366054164|ref|ZP_09451886.1| ATP-dependent RNA helicase DeaD [Lactobacillus suebicus KCTC 3549]
Length = 506
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 87/253 (34%), Positives = 148/253 (58%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + ++ L++ TRELA Q +E R K
Sbjct: 38 GQDVIGQAQTGTGKTAAFGLPIIEHIDTENPDIQALIISPTRELAIQTQEELYRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ KV V +GG I++ LK H PQI+VGTPGR+L + + + L+ LK +LDE D+M
Sbjct: 97 HAKVQVVYGGADIRRQINNLKNH-PQILVGTPGRLLDHINRRTVKLANLKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + +FM DP +V + + +LT
Sbjct: 156 L-NMGFLEDIESIIKQTPEKRQTLLFSATMPPEIKKIGVQFMTDPKQVKIKAK-ELTTEL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + ++DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 IDQYYVRSRDFEKFDIMTRMIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ+ R + FK
Sbjct: 274 TQQRRTQIMNRFK 286
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHHGV 338
>gi|422825892|ref|ZP_16874071.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
gi|324995328|gb|EGC27240.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK678]
Length = 523
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|417793177|ref|ZP_12440462.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
gi|334274175|gb|EGL92503.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus oralis
SK255]
Length = 520
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|315612763|ref|ZP_07887674.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
gi|315314873|gb|EFU62914.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
sanguinis ATCC 49296]
Length = 525
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTHLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|422849128|ref|ZP_16895804.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
gi|325690149|gb|EGD32153.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK115]
Length = 523
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNRIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|259047319|ref|ZP_05737720.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
gi|259036015|gb|EEW37270.1| cold-shock DEAD box protein A [Granulicatella adiacens ATCC 49175]
Length = 520
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 96/271 (35%), Positives = 154/271 (56%), Gaps = 8/271 (2%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
KA+ G+D++ QA++G GKTA F L LQ+++ + V LV+ TRELA Q +E R
Sbjct: 45 KALQGLDVIGQAQTGTGKTAAFGLPMLQKIDPSKKGVQGLVIAPTRELAIQTQEELFRLG 104
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ I+V +GG I + LK NPQIVVGTPGR+L + + L L ++ +LDE
Sbjct: 105 RD-KKIRVQAVYGGADINRQIRQLK-ENPQIVVGTPGRLLDHISRRTLKLGAVETLVLDE 162
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV-DDEAK 323
D+ML + D++ I + P +Q ++FSAT+ +I+ + +FM DP V + +E
Sbjct: 163 ADEML-NMGFLEDIESIIKQVPENRQTLLFSATMPDDIKRIGVQFMKDPEHVRIKSNEMT 221
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
TL + Q++VK K+ EK + LLDV ++F ++ R L+ L + + A
Sbjct: 222 ATL--IDQYFVKCKDYEKFDIMTRLLDVQTPELTIVFGRTKRRVDELARGLEMRGYRAEG 279
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
IH ++Q++R+ ++FK+ H L I A+D
Sbjct: 280 IHGDLSQQKRMSVLRDFKNNH--LDILVATD 308
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + +
Sbjct: 303 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGQEGM 349
>gi|354544154|emb|CCE40877.1| hypothetical protein CPAR2_109150 [Candida parapsilosis]
Length = 397
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 108/326 (33%), Positives = 161/326 (49%), Gaps = 39/326 (11%)
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+HS F D LKP I+R I FG G Y+ P
Sbjct: 22 VHS--FDDLNLKPNIVRGI------------FGYG-----------YETPS--------- 47
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 48 AIQQRAILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
Y+ + V GG + D E K+ QIVVGTPGRI ++ +
Sbjct: 108 KSVITSIGLYL-KVTVHASIGGTSVSDDIEAFKS-GAQIVVGTPGRIFDMIERRYFRTDK 165
Query: 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+K FILDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ +
Sbjct: 166 VKMFILDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRI 224
Query: 317 YVDDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLS 375
V + +LTL G++Q Y+ ++E E K L +L D + Q VIF + ++ L+ L
Sbjct: 225 LVKKD-ELTLEGIKQFYINVEEEEFKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLR 283
Query: 376 EQNFPAVSIHRGMTQEERLKKYQEFK 401
E+ F +IH + Q ER +EF+
Sbjct: 284 EEKFTVSAIHSDLPQGERDTIMKEFR 309
Score = 50.1 bits (118), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 66 KQKEVKGAYVSIHS---SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFN 122
K +E K +IHS G RD ++K R+ RIL++T+L RG+D+++V++V N
Sbjct: 281 KLREEKFTVSAIHSDLPQGERDTIMKE--FRS--GSSRILISTDLLARGIDVQQVSLVIN 336
Query: 123 YDMPEDSDTYLHRVA 137
YD+P + + Y+HR+
Sbjct: 337 YDLPANKENYIHRIG 351
>gi|311031130|ref|ZP_07709220.1| DEAD/DEAH box helicase domain protein [Bacillus sp. m3-13]
Length = 507
Score = 157 bits (398), Expect = 7e-36, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKT F L L+ ++ T+ ++ +V+ TRELA Q+++E + S
Sbjct: 36 ALTGKDVIGQAQTGTGKTIAFGLPLLENVDVTNESIQGIVIAPTRELAIQVAEEIYKAS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +V FGG I + LK NP IVVGTPGR+L + K L L + +LDE
Sbjct: 95 YHKRARVLSVFGGQDISRQIRSLK-KNPHIVVGTPGRLLDHINRKTLRLQNVNTVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D+++I +P KQ ++FSAT+ IR + ++FM +P+ V V + +LT
Sbjct: 154 DEML-NMGFIEDIEKILAETPEKKQTLLFSATMPAPIRAIAERFMSEPVNVKVQAK-ELT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ YV++ E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 ISNIQQFYVEVPEKKKFDTLTRLLDIQSPELAIIFGRTKRRVDELSDALNVRGYSAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
++Q +R+ ++FK+
Sbjct: 272 GDLSQAKRMSVLRKFKE 288
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
>gi|449880947|ref|ZP_21784188.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
gi|449925904|ref|ZP_21800489.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449161097|gb|EMB64311.1| ATP-dependent RNA helicase [Streptococcus mutans 4SM1]
gi|449252101|gb|EMC50090.1| ATP-dependent RNA helicase [Streptococcus mutans SA38]
Length = 517
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ T++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALDGKDVIGQAQTGTGKTAAFGLPTLNKIDVTNNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|386312353|ref|YP_006008518.1| DEAD/DEAH box helicase [Shewanella putrefaciens 200]
gi|319424978|gb|ADV53052.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens 200]
Length = 635
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 153/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L LK +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V + + P+ V ++ ++ T+
Sbjct: 161 L-KMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIE-SSQTTVES 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V V+IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 279 NQQARERAVDQLK--RGKLDILIATD 302
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGR---TGMAIL 346
>gi|270293148|ref|ZP_06199359.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
gi|270279127|gb|EFA24973.1| probable ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M143]
Length = 520
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|299822345|ref|ZP_07054231.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
gi|299815874|gb|EFI83112.1| ATP-dependent RNA helicase DeaD [Listeria grayi DSM 20601]
Length = 512
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ ++N+ L++ TRELA Q+S+E + S
Sbjct: 38 GLAGKDLIGQAQTGTGKTAAFGLPIINKIDQKNNNIQALIIAPTRELAIQVSEELYKLS- 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y + +V +GG I + LK NPQI+VGTPGR+L L+ + L L ++ +LDE
Sbjct: 97 YDKHARVLAVYGGSDISRQIRSLK-KNPQIIVGTPGRMLDLINRRVLKLENVETLVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I +S P +Q ++FSAT+ IR + ++FMH P V + + ++T
Sbjct: 156 DEML-NMGFIDDIEAILKSVPSERQTLLFSATMPDPIRRIAERFMHSPELVRIKAK-EMT 213
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV +IF ++ R LS L + + A IH
Sbjct: 214 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIIFGRTKRRVDELSRALDMRGYVAEGIH 273
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 274 GDLTQAKRMSVLRKFKE 290
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/75 (38%), Positives = 45/75 (60%), Gaps = 3/75 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 GKTAVFVLATLQQLE 175
G + T +++E
Sbjct: 352 GYLRIVEETTKKRME 366
>gi|157150549|ref|YP_001450886.1| DEAD/DEAH box helicase [Streptococcus gordonii str. Challis substr.
CH1]
gi|157075343|gb|ABV10026.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
gordonii str. Challis substr. CH1]
Length = 523
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V LV+ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|323352691|ref|ZP_08087661.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
gi|322121727|gb|EFX93473.1| cold-shock DEAD box protein A [Streptococcus sanguinis VMC66]
Length = 523
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422879322|ref|ZP_16925788.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|422929168|ref|ZP_16962110.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|422932139|ref|ZP_16965070.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
gi|332366034|gb|EGJ43790.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1059]
gi|339615357|gb|EGQ20036.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis ATCC
29667]
gi|339618923|gb|EGQ23513.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK340]
Length = 523
Score = 157 bits (398), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422852083|ref|ZP_16898753.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
gi|325694070|gb|EGD35988.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK150]
Length = 523
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|417994179|ref|ZP_12634513.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
gi|410530495|gb|EKQ05268.1| cold-shock DEAD-box protein A [Lactobacillus casei CRF28]
Length = 502
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ ++ D ++ LV+ TRELA Q +E R +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQALVISPTRELAIQTQEELYRLGQD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IKV +GG I++ L H PQIVVGTPGRIL + L L LK +LDE D+M
Sbjct: 97 KIKVQAVYGGADIRRQIRQLSEH-PQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I P +Q ++FSAT+ I + KFMH+P+ V + + +LT
Sbjct: 156 LD-MGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAK-ELTADT 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+YV+ K+ EK + L DV + + +IF ++ R L+ L + + A IH +
Sbjct: 214 VEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ++R+ ++FK
Sbjct: 274 TQQKRMSVLRQFK 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
LVAT++ RG+DI V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 293 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|335428790|ref|ZP_08555700.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|335430826|ref|ZP_08557712.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334887366|gb|EGM25698.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
gi|334891731|gb|EGM29977.1| putative ATP-dependent RNA helicase [Haloplasma contractile
SSD-17B]
Length = 528
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 94/291 (32%), Positives = 162/291 (55%), Gaps = 7/291 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F + +++L+ + ++ +++C TRELA Q++ E + +KY+
Sbjct: 40 GNDIIGQAQTGTGKTAAFSIPLIEKLDLNNRSIQGIILCPTRELAIQVTDEIRKLTKYVE 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG + LK PQIVVGTPGR++ + K + L +K ILDE D+M
Sbjct: 100 GVKVVPIYGGQSYNIQLKALK-RKPQIVVGTPGRVIDHINRKTVKLENIKMLILDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ R D++ I + +P +Q +FSAT+ K I+ + K+ P + ++ ++ LT+
Sbjct: 159 L-KMGFREDLEYILQKTPTERQTTLFSATMPKAIQDIANKYQKKPKLIQIERKS-LTVDN 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y +L N+K L LLD + ++F + L L E N+ ++H +
Sbjct: 217 IKQEYFELNNNQKFDLLVRLLDHNHYQSAIVFCNTKREVDELVVRLQEHNYMTEALHGDL 276
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPDE 438
Q++R + F++ K + I A+D I +NNV+ F+ I L DE
Sbjct: 277 KQQQRDRVMNSFRN--KNIKILVATDVAARGIDVNNVEAVFNYDIP-LDDE 324
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 23/44 (52%), Positives = 32/44 (72%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ILVAT++ RG+D+ V VFNYD+P D + Y+HR+ R GR G
Sbjct: 294 KILVATDVAARGIDVNNVEAVFNYDIPLDDEAYVHRIGRTGRAG 337
>gi|301067543|ref|YP_003789566.1| superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
gi|300439950|gb|ADK19716.1| Superfamily II DNA and RNA helicase [Lactobacillus casei str.
Zhang]
Length = 502
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ ++ D ++ LV+ TRELA Q +E R +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQALVISPTRELAIQTQEELYRLGQD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IKV +GG I++ L H PQIVVGTPGRIL + L L LK +LDE D+M
Sbjct: 97 KIKVQAVYGGADIRRQIRQLSEH-PQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I P +Q ++FSAT+ I + KFMH+P+ V + + +LT
Sbjct: 156 LD-MGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAK-ELTADT 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+YV+ K+ EK + L DV + + +IF ++ R L+ L + + A IH +
Sbjct: 214 VEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ++R+ ++FK
Sbjct: 274 TQQKRMSVLRQFK 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
LVAT++ RG+DI V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 293 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|120600329|ref|YP_964903.1| DEAD/DEAH box helicase [Shewanella sp. W3-18-1]
gi|146291742|ref|YP_001182166.1| DEAD/DEAH box helicase [Shewanella putrefaciens CN-32]
gi|120560422|gb|ABM26349.1| DEAD/DEAH box helicase domain protein [Shewanella sp. W3-18-1]
gi|145563432|gb|ABP74367.1| DEAD/DEAH box helicase domain protein [Shewanella putrefaciens
CN-32]
Length = 640
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 153/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L LK +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLDSLKALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V + + P+ V ++ ++ T+
Sbjct: 161 L-KMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRSPVHVRIE-SSQTTVES 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V V+IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 279 NQQARERAVDQLK--RGKLDILIATD 302
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGR---TGMAIL 346
>gi|116495993|ref|YP_807727.1| superfamily II DNA/RNA helicase [Lactobacillus casei ATCC 334]
gi|191639473|ref|YP_001988639.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227533029|ref|ZP_03963078.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239630391|ref|ZP_04673422.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|385821240|ref|YP_005857627.1| DEAD/DEAH box helicase [Lactobacillus casei LC2W]
gi|385824432|ref|YP_005860774.1| DEAD/DEAH box helicase [Lactobacillus casei BD-II]
gi|409998335|ref|YP_006752736.1| DEAD/DEAH box helicase [Lactobacillus casei W56]
gi|417981730|ref|ZP_12622394.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|417984551|ref|ZP_12625171.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|417987806|ref|ZP_12628359.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|417997288|ref|ZP_12637547.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|418000194|ref|ZP_12640390.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|418003339|ref|ZP_12643426.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|418006207|ref|ZP_12646168.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|418008368|ref|ZP_12648235.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|418011933|ref|ZP_12651680.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|418013012|ref|ZP_12652674.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
gi|116106143|gb|ABJ71285.1| Superfamily II DNA and RNA helicase [Lactobacillus casei ATCC 334]
gi|190713775|emb|CAQ67781.1| ATP-dependent RNA helicase [Lactobacillus casei BL23]
gi|227189430|gb|EEI69497.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239526674|gb|EEQ65675.1| superfamily protein DNA and RNA helicase [Lactobacillus paracasei
subsp. paracasei 8700:2]
gi|327383567|gb|AEA55043.1| DEAD box helicase family protein [Lactobacillus casei LC2W]
gi|327386759|gb|AEA58233.1| DEAD box helicase family protein [Lactobacillus casei BD-II]
gi|406359347|emb|CCK23617.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus casei W56]
gi|410521133|gb|EKP96098.1| cold-shock DEAD-box protein A [Lactobacillus casei 12A]
gi|410522198|gb|EKP97147.1| cold-shock DEAD-box protein A [Lactobacillus casei 32G]
gi|410525109|gb|EKQ00016.1| cold-shock DEAD-box protein A [Lactobacillus casei 21/1]
gi|410533048|gb|EKQ07736.1| cold-shock DEAD-box protein A [Lactobacillus casei M36]
gi|410537114|gb|EKQ11693.1| cold-shock DEAD-box protein A [Lactobacillus casei T71499]
gi|410542456|gb|EKQ16903.1| cold-shock DEAD-box protein A [Lactobacillus casei UCD174]
gi|410544369|gb|EKQ18698.1| cold-shock DEAD-box protein A [Lactobacillus casei UW1]
gi|410547046|gb|EKQ21289.1| cold-shock DEAD-box protein A [Lactobacillus casei UW4]
gi|410551341|gb|EKQ25407.1| cold-shock DEAD-box protein A [Lactobacillus casei Lc-10]
gi|410556209|gb|EKQ30122.1| cold-shock DEAD-box protein A [Lactobacillus casei Lpc-37]
Length = 502
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ ++ D ++ LV+ TRELA Q +E R +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQALVISPTRELAIQTQEELYRLGQD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IKV +GG I++ L H PQIVVGTPGRIL + L L LK +LDE D+M
Sbjct: 97 KIKVQAVYGGADIRRQIRQLSEH-PQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I P +Q ++FSAT+ I + KFMH+P+ V + + +LT
Sbjct: 156 LD-MGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAK-ELTADT 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+YV+ K+ EK + L DV + + +IF ++ R L+ L + + A IH +
Sbjct: 214 VEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ++R+ ++FK
Sbjct: 274 TQQKRMSVLRQFK 286
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 34/46 (73%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
LVAT++ RG+DI V V+NYD+P+D D+Y+HR+ R GR G K V
Sbjct: 293 LVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGHKGV 338
>gi|145481077|ref|XP_001426561.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124393636|emb|CAK59163.1| unnamed protein product [Paramecium tetraurelia]
Length = 395
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 96/265 (36%), Positives = 156/265 (58%), Gaps = 5/265 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ Q++SG GKTAVF L+ L ++ + VL++ +TRELA Q +K
Sbjct: 56 VIQGRDVIVQSQSGTGKTAVFSLSALSMIDLSIREPQVLILSNTRELAEQSAKVAMALGD 115
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ N+ + GG IQ D L+ H QIV GTPGR+ +++ K+L + LK ILDE
Sbjct: 116 FL-NVSIHACIGGHSIQDDISKLQ-HGVQIVSGTPGRVFDMIQRKELRVRHLKMLILDEA 173
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + ++ V +I+R P T Q ++ SATL +EI + KFM++P+++ V + +LT
Sbjct: 174 DEMLTK-GFKQQVYDIYRYLPPTTQNVVVSATLPQEILDMTDKFMNNPLKILVKRD-ELT 231
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q ++++ KE K L +L D L Q VIF ++ +C L+ + E F V +
Sbjct: 232 LEGIKQFFIQVDKEEWKFDTLCDLYDTLTITQAVIFCSTINKCEWLANKMREHEFTVVQM 291
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
+ M+Q+ER K EF+ +K + I
Sbjct: 292 NGKMSQKERDKIMAEFRQGNKRVLI 316
Score = 69.3 bits (168), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT+++GRG+D+++V++V NYD+P + Y+HR+ R+GRFG K V
Sbjct: 313 RVLIATDVWGRGLDVQQVSLVINYDLPNSRELYIHRIGRSGRFGRKGV 360
>gi|359768236|ref|ZP_09272012.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|378717409|ref|YP_005282298.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
gi|359314324|dbj|GAB24845.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia
polyisoprenivorans NBRC 16320]
gi|375752112|gb|AFA72932.1| putative cold-shock DEAD-box protein [Gordonia polyisoprenivorans
VH2]
Length = 587
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 85/266 (31%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +++ L++ TRELA Q+S+ + R+S +M
Sbjct: 52 GRDVVGLAQTGTGKTAAFAIPILSRIDPAVRRPQALILAPTRELALQVSEAFSRYSAHMP 111
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V +GG L+ Q++VGTPGR++ + L++S L++ +LDE D+M
Sbjct: 112 EVRVLPIYGGQSYGVQLAGLR-RGAQVIVGTPGRVIDHLDKGTLDISELEYLVLDEADEM 170
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + DV+ I +P +KQV +FSAT+ IR + +K++HDP E+ V + T
Sbjct: 171 L-TMGFAEDVERILAETPDSKQVALFSATMPSAIRRLAQKYLHDPQEITVKSKTA-TAQN 228
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y+++ K L L+V F+ +++FV++ L+ L + F AV+I+ M
Sbjct: 229 ITQRYLQVSHQRKLDALTRFLEVETFDAMIVFVRTKQATEELAERLRARGFSAVAINGDM 288
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD G+ I A+D
Sbjct: 289 VQAQRERTINQLKD--GGIDILVATD 312
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++R++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 307 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 349
>gi|417915918|ref|ZP_12559512.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
gi|342831712|gb|EGU66023.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis bv. 2
str. SK95]
Length = 525
Score = 157 bits (398), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|339451980|ref|ZP_08655350.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc lactis KCTC 3528]
Length = 513
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 87/254 (34%), Positives = 149/254 (58%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q + E ++ Y
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILENIDLDNKNIQALIVSPTRELAIQTADELKKLG-YDK 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM DP + + EAK LT
Sbjct: 156 L-NMGFLDDIEAIIKNTPADRQTLLFSATMPPAIKRIGVKFMTDPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+ ++NEK + +LDV ++F ++ R L+ L + + A +H
Sbjct: 213 LVDQYFVRARDNEKFDTMTRILDVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLSQFK 286
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G + V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGV 338
>gi|417933911|ref|ZP_12577231.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
gi|340770481|gb|EGR92996.1| DEAD/DEAH box helicase [Streptococcus mitis bv. 2 str. F0392]
Length = 525
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|401682240|ref|ZP_10814134.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
gi|400184676|gb|EJO18914.1| DEAD/DEAH box helicase [Streptococcus sp. AS14]
Length = 523
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|259501949|ref|ZP_05744851.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
gi|259170126|gb|EEW54621.1| DEAD/DEAH box family ATP-dependent RNA helicase [Lactobacillus
antri DSM 16041]
Length = 512
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ L++ TREL Q +E R K
Sbjct: 52 GQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPTRELVIQTQEELYRLGK-DK 110
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V V +GG I++ + LK H+PQI+VGTPGR+ + + L ++ +LDE D+M
Sbjct: 111 HVRVQVVYGGADIRRQIKSLK-HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEM 169
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + ++FM DP V + + +LT
Sbjct: 170 L-NMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTDPETVRIKAK-ELTTDL 227
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 228 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 287
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K ++FK H L I A+D
Sbjct: 288 TQDRRTKIMKKFK--HGDLDILVATD 311
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G
Sbjct: 306 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAG 348
>gi|417990847|ref|ZP_12631309.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
gi|410533506|gb|EKQ08184.1| cold-shock DEAD-box protein A [Lactobacillus casei A2-362]
Length = 502
Score = 157 bits (397), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 93/253 (36%), Positives = 145/253 (57%), Gaps = 4/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L LQ ++ D ++ LV+ TRELA Q +E R +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILQNIDKADRSIQALVISPTRELAIQTQEELYRLGQD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IKV +GG I++ L H PQIVVGTPGRIL + L L LK +LDE D+M
Sbjct: 97 KIKVQAVYGGADIRRQIRQLSEH-PQIVVGTPGRILDHIGRHTLKLQNLKVLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+++I P +Q ++FSAT+ I + KFMH+P+ V + + +LT
Sbjct: 156 LD-MGFIDDIEKIVEQMPTARQTLLFSATIPASIMRLTNKFMHEPVTVKIKAK-ELTADT 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+YV+ K+ EK + L DV + + +IF ++ R L+ L + + A IH +
Sbjct: 214 VEQYYVRAKDYEKFDVMTRLFDVQDPDLALIFGRTKRRVDELTRGLKARGYRAEGIHGDL 273
Query: 389 TQEERLKKYQEFK 401
TQ++R+ ++FK
Sbjct: 274 TQQKRMSVLRQFK 286
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 25/46 (54%), Positives = 33/46 (71%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
LVAT++ RG+DI V V+NYD+P+D D Y+HR+ R GR G K V
Sbjct: 293 LVATDVAARGLDISGVTHVYNYDIPQDPDPYVHRIGRTGRAGHKGV 338
>gi|422865943|ref|ZP_16912568.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
gi|327489488|gb|EGF21281.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1058]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGIKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|322374711|ref|ZP_08049225.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
gi|321280211|gb|EFX57250.1| putative ATP-dependent RNA helicase Exp9 (Exportedprotein 9)
[Streptococcus sp. C300]
Length = 449
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|50303057|ref|XP_451466.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74660682|sp|Q6CX73.1|FAL1_KLULA RecName: Full=ATP-dependent RNA helicase FAL1
gi|49640597|emb|CAH03054.1| KLLA0A10659p [Kluyveromyces lactis]
Length = 398
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 108/307 (35%), Positives = 170/307 (55%), Gaps = 11/307 (3%)
Query: 141 RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200
R ++ + G D++ QA+SG GKTA F + LQ +++ + LV+ TRELA Q
Sbjct: 52 RAISQIISGKDVIAQAQSGTGKTATFTIGLLQAIDSKSKELQALVLSPTRELASQSESVI 111
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
Y+ N+ GG +Q+D + + + N Q+V GTPGR+L +++ + LN+ K
Sbjct: 112 SNLGDYL-NVTAHACTGGKALQQDIKKV-SKNCQVVSGTPGRVLDMIKRQVLNVRNCKIL 169
Query: 261 ILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D++L E L ++ + +IF P T QV++ SAT+SK+I + KKFM DP+++ V
Sbjct: 170 VLDEADELLGETLGFKQQIYDIFTKLPPTIQVVVVSATMSKDILEITKKFMSDPVKILVK 229
Query: 320 DEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
+ +++L ++Q+YV + KE K L +L D L Q VIF + + LS L++ N
Sbjct: 230 RD-EISLDVIKQYYVDVEKEEWKFDTLCDLYDSLTITQCVIFCNTRKKVDWLSRKLTQTN 288
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDE 438
F S+H M QEER Q DF G A S + A+ + +VQ V ++PD
Sbjct: 289 FSVSSMHGDMKQEER---DQVMNDFRSGKARVLISTDVWARGI-DVQQISLVINYDIPD- 343
Query: 439 IDLSTYI 445
+L YI
Sbjct: 344 -NLENYI 349
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 41/48 (85%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D++++++V NYD+P++ + Y+HR+ R+GRFG K V
Sbjct: 316 RVLISTDVWARGIDVQQISLVINYDIPDNLENYIHRIGRSGRFGRKGV 363
>gi|28868981|ref|NP_791600.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato str. DC3000]
gi|301381308|ref|ZP_07229726.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato Max13]
gi|302061477|ref|ZP_07253018.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato K40]
gi|302130057|ref|ZP_07256047.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. tomato NCPPB 1108]
gi|422590026|ref|ZP_16664684.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|422649334|ref|ZP_16712433.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|422658243|ref|ZP_16720679.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
gi|28852221|gb|AAO55295.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato str. DC3000]
gi|330877010|gb|EGH11159.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. morsprunorum str. M302280]
gi|330968143|gb|EGH68403.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. actinidiae str. M302091]
gi|331016872|gb|EGH96928.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
syringae pv. lachrymans str. M302278]
Length = 562
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ T L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPTKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|422855974|ref|ZP_16902632.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
gi|327461635|gb|EGF07966.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422853805|ref|ZP_16900469.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|422863055|ref|ZP_16909687.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|422883664|ref|ZP_16930113.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
gi|325697116|gb|EGD39003.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK160]
gi|327473355|gb|EGF18775.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK408]
gi|332362751|gb|EGJ40547.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK49]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422876910|ref|ZP_16923380.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
gi|332361718|gb|EGJ39522.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1056]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|322385798|ref|ZP_08059442.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
51100]
gi|417922852|ref|ZP_12566338.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
gi|321270536|gb|EFX53452.1| ATP-dependent RNA helicase DeaD [Streptococcus cristatus ATCC
51100]
gi|342832000|gb|EGU66303.1| DEAD/DEAH box helicase [Streptococcus cristatus ATCC 51100]
Length = 524
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|126274019|ref|XP_001387376.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
stipitis CBS 6054]
gi|146324945|sp|A3GFI4.1|IF4A_PICST RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
AltName: Full=Translation initiation factor 1
gi|126213246|gb|EAZ63353.1| Eukaryotic initiation factor 4A (eIF4A) (eIF-4A) [Scheffersomyces
stipitis CBS 6054]
Length = 397
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 161/321 (50%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 25 FDDLNLKPNIVRGI------------FGYG-----------YETPS---------AIQQR 52
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 53 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVIT 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG +Q D E ++ Q+VVGTPGR+ ++ + +K FI
Sbjct: 113 SIGLYL-NVTVHASIGGTSMQDDIEAFRS-GVQVVVGTPGRVFDMIERRYFKTEKVKMFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
+DE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 171 MDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 229
Query: 322 AKLTLHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q Y+ ++ E+ K L +L D + Q VIF + ++ L+T L +NF
Sbjct: 230 -ELTLEGIKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKAENFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER +EF+
Sbjct: 289 VSAIHADLPQAERDTIMKEFR 309
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL+AT+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 314 RILIATDLLARGIDVQQVSLVINYDLPSNKENYIHRIG 351
>gi|422881818|ref|ZP_16928274.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
gi|332363463|gb|EGJ41246.1| cold-shock DEAD box protein A [Streptococcus sanguinis SK355]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422860597|ref|ZP_16907241.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
gi|327468980|gb|EGF14452.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK330]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|67484120|ref|XP_657280.1| DEAD/DEAH box helicase [Entamoeba histolytica HM-1:IMSS]
gi|167395584|ref|XP_001741647.1| ATP-dependent RNA helicase eIF4A [Entamoeba dispar SAW760]
gi|56474536|gb|EAL51901.1| DEAD/DEAH box helicase, putative [Entamoeba histolytica HM-1:IMSS]
gi|165893771|gb|EDR21906.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba dispar
SAW760]
gi|407041400|gb|EKE40712.1| DEAD/DEAH box helicase, putative [Entamoeba nuttalli P19]
gi|449705837|gb|EMD45802.1| ATP-dependent RNA helicase eIF4A, putative [Entamoeba histolytica
KU27]
Length = 391
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 149/263 (56%), Gaps = 5/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G +++ QA+SG GKTA F + LQQ++T +++ TRELA Q + + S+Y+
Sbjct: 55 GRNLIAQAQSGTGKTAAFSIGVLQQIDTNSKVCQAILLSPTRELALQTQEVVKNLSQYL- 113
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IK GG +++ E L+ + Q+VVGTPGR+L ++ + ++ + +K+ ILDE D+M
Sbjct: 114 DIKTFACIGGTSVRETIEALR-NGVQVVVGTPGRVLDMLDRQAIDPNTVKYLILDEADEM 172
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L Q + + I +S P T QV MFSAT+ + + KKFM +P+++ V E +LTL G
Sbjct: 173 LSQ-GFKDQMYTILKSLPSTVQVGMFSATMPADALDISKKFMENPVKILVKKE-ELTLEG 230
Query: 329 LQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ + ++E K L +L V+ NQ VIF S R + L N+P H
Sbjct: 231 IKQFYIDVVKDEYKIDTLIDLYQVISVNQSVIFCNSKNRVEWIQRRLQAHNYPVSITHGD 290
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
+T EER EF+ + IT
Sbjct: 291 LTMEERNNVLNEFRQGATRILIT 313
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL+ T++ RG+D+++V++V N+DMP ++Y+HR+ R+ RFG K V
Sbjct: 309 RILITTDMLSRGIDVQQVSLVINFDMPVSDESYIHRIGRSARFGRKGV 356
>gi|421488009|ref|ZP_15935407.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
gi|400369971|gb|EJP22968.1| DEAD/DEAH box helicase [Streptococcus oralis SK304]
Length = 525
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|422821668|ref|ZP_16869861.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|422846217|ref|ZP_16892900.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
gi|324990619|gb|EGC22555.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK353]
gi|325688268|gb|EGD30287.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK72]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|422824031|ref|ZP_16872219.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|422858936|ref|ZP_16905586.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
gi|324993358|gb|EGC25278.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK405]
gi|327458716|gb|EGF05064.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1057]
Length = 523
Score = 157 bits (397), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPNHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKISGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|419766821|ref|ZP_14292997.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
gi|383353731|gb|EID31335.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus mitis SK579]
Length = 524
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|392329574|ref|ZP_10274190.1| putative ATP-dependent RNA helicase [Streptococcus canis FSL
Z3-227]
gi|391419446|gb|EIQ82257.1| putative ATP-dependent RNA helicase [Streptococcus canis FSL
Z3-227]
Length = 539
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTKDNIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALVLEHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFNTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|308487516|ref|XP_003105953.1| CRE-INF-1 protein [Caenorhabditis remanei]
gi|308254527|gb|EFO98479.1| CRE-INF-1 protein [Caenorhabditis remanei]
Length = 402
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 103/338 (30%), Positives = 171/338 (50%), Gaps = 52/338 (15%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ D +V LVM TRELA QI K +Y+
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+ + GG ++ D+ L+ + +VVGTPGR+ ++ L+ S +K F+LDE D+M
Sbjct: 125 NVNILPCIGGTSVRDDQRKLE-NGIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + ++FRS P QV++ SAT+ E+ V +FM +P+ + V + +LTL G
Sbjct: 184 LSR-GFKDQIYDVFRSMPQDVQVVLLSATMPSEVLDVTDRFMRNPIRILVKKD-ELTLEG 241
Query: 329 LQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ ++++E K L +L +V+ Q VIF + + L+ ++ + F +H
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDQLTEQMTNKQFTVSCLHGD 301
Query: 388 MTQEERLKKYQEFKD------------------------------------FH------- 404
M Q ER +EF+ H
Sbjct: 302 MDQAERDTIMREFRSGSSRVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + ENDA+ L ++ + I E+P+ I
Sbjct: 362 FGRKGVAINFVT-ENDARQLKEIETYYTTQIEEMPESI 398
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
>gi|422871364|ref|ZP_16917857.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
gi|328945532|gb|EGG39683.1| ATP-dependent RNA helicase DeaD [Streptococcus sanguinis SK1087]
Length = 523
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 35 AMAGKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 379
>gi|424788171|ref|ZP_18214930.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
gi|422112935|gb|EKU16692.1| helicase conserved C-terminal domain protein [Streptococcus
intermedius BA1]
Length = 514
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + + LV+ TRELA Q +E RF +
Sbjct: 35 AMEGKDVIGQAQTGTGKTAAFGFPTLEKINTENPFIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVEILILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKDPTHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPDLSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + + E AFQ K+
Sbjct: 349 G--------YLQIIESLTKKRMKGMKPASAEEAFQAKKK 379
>gi|255730427|ref|XP_002550138.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
gi|240132095|gb|EER31653.1| eukaryotic initiation factor 4A [Candida tropicalis MYA-3404]
Length = 397
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 159/321 (49%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 25 FDDLNLKPNIVRGI------------FGYG-----------YETPS---------AIQQR 52
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 53 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVIT 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG + D E ++ QIVVGTPGR+ ++ + +K FI
Sbjct: 113 AIGLYL-NVTVHASIGGTSMSDDIEAFRS-GVQIVVGTPGRVYDMIERRYFKTDKVKMFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IFR P T QV++ SAT+ +E+ V KFM++P+ + V +
Sbjct: 171 LDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQEVLEVTTKFMNNPVRILVKKD 229
Query: 322 AKLTLHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q Y+ ++ E K L +L D + Q VIF + T+ L+ L EQ+F
Sbjct: 230 -ELTLEGIKQFYINVELEEYKFDCLCDLYDSISVTQAVIFCNTRTKVEFLTNKLREQHFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER +EF+
Sbjct: 289 VSAIHADLPQAERDTIMKEFR 309
Score = 47.0 bits (110), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 351
>gi|213968691|ref|ZP_03396833.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato T1]
gi|213926624|gb|EEB60177.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. tomato T1]
Length = 573
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ T L++ TRELA Q++ +E ++K M
Sbjct: 54 GHDMIGQAQTGTGKTAAFALPILHRIDPTKREPQALILAPTRELALQVATAFETYAKQMP 113
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 114 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 172
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 173 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 230
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 231 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 290
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 291 AQNQRERVIESLKDGR--LDIVVATD 314
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 309 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 351
>gi|306829117|ref|ZP_07462307.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
gi|304428203|gb|EFM31293.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus mitis ATCC
6249]
Length = 525
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|126175951|ref|YP_001052100.1| DEAD/DEAH box helicase [Shewanella baltica OS155]
gi|152999102|ref|YP_001364783.1| DEAD/DEAH box helicase [Shewanella baltica OS185]
gi|217971789|ref|YP_002356540.1| DEAD/DEAH box helicase [Shewanella baltica OS223]
gi|386342704|ref|YP_006039070.1| DEAD/DEAH box helicase [Shewanella baltica OS117]
gi|125999156|gb|ABN63231.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS155]
gi|151363720|gb|ABS06720.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS185]
gi|217496924|gb|ACK45117.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS223]
gi|334865105|gb|AEH15576.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS117]
Length = 640
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L L+ +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V + + +P+ V ++ ++ T+
Sbjct: 161 L-KMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIE-SSQTTVES 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V V+IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 279 NQQARERAVDQLK--RGKLDILIATD 302
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGR---TGMAIL 346
>gi|219870715|ref|YP_002475090.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
SH0165]
gi|219690919|gb|ACL32142.1| cold-shock DEAD box protein A-like protein [Haemophilus parasuis
SH0165]
Length = 603
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ + +LVM TRELA Q++ E+FSK M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPEQRHPQMLVMAPTRELAIQVADACEQFSKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG LK + Q+VVGTPGRIL +R L+LS+LK +LDE D+M
Sbjct: 103 GIRTVTIYGGQRYDIQIRALK-NGAQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + K+FM DP EV + + +
Sbjct: 162 L-RMGFIEDVETVMAELPEDHQTALFSATMPEPIRRITKRFMKDPQEVKIQATQR-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN L L+V EF+ +IF ++ T I ++ L + A +++ M
Sbjct: 220 IAQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDM 279
Query: 389 TQEERLKKYQEFK 401
TQ+ R + ++ K
Sbjct: 280 TQQAREQALEKLK 292
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
++VAT++ RG+DIER+++V NYD+P D+++Y+HR+ R GR G
Sbjct: 298 VIVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAG 340
>gi|347751920|ref|YP_004859485.1| DEAD/DEAH box helicase domain-containing protein [Bacillus
coagulans 36D1]
gi|347584438|gb|AEP00705.1| DEAD/DEAH box helicase domain protein [Bacillus coagulans 36D1]
Length = 475
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 149/254 (58%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F + +++++ N+ +++ TRELA Q+S+E R + S
Sbjct: 39 GKDIIGQAQTGTGKTAAFGIPLIEKIDHRSRNIQGIIIAPTRELAIQVSEELYRIGQD-S 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG I + LK H PQI+VGTPGRIL + L L + +LDE D+M
Sbjct: 98 RVHVLAVYGGQDISRQIRALKNH-PQIIVGTPGRILDHIHRGTLKLDHVHTLVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q M+FSAT+ IR + ++FM++P V V + ++T+
Sbjct: 157 L-NMGFIDDIEAILSTVPKDRQTMLFSATMPDPIRKIAERFMNNPELVRVKAK-EMTVPS 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+YVK++E EK L LLDV + ++F ++ R L+ L+ + + A IH +
Sbjct: 215 IEQYYVKVQEREKFDVLSRLLDVQSPDLAIVFGRTKRRVDELANALNLRGYLAEGIHGDL 274
Query: 389 TQEERLKKYQEFKD 402
+Q +RL ++FKD
Sbjct: 275 SQAKRLSVLRKFKD 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/63 (41%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + + M + + G
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGREG-MAMTFVTPREMGY 351
Query: 161 GKT 163
KT
Sbjct: 352 LKT 354
>gi|160873699|ref|YP_001553015.1| DEAD/DEAH box helicase [Shewanella baltica OS195]
gi|373951054|ref|ZP_09611015.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
gi|378706943|ref|YP_005271837.1| DEAD/DEAH box helicase [Shewanella baltica OS678]
gi|386323127|ref|YP_006019244.1| DEAD/DEAH box helicase [Shewanella baltica BA175]
gi|418025621|ref|ZP_12664598.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|160859221|gb|ABX47755.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS195]
gi|315265932|gb|ADT92785.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS678]
gi|333817272|gb|AEG09938.1| DEAD/DEAH box helicase domain protein [Shewanella baltica BA175]
gi|353534882|gb|EHC04447.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS625]
gi|373887654|gb|EHQ16546.1| DEAD/DEAH box helicase domain protein [Shewanella baltica OS183]
Length = 640
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L L+ +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLDSLQALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V + + +P+ V ++ ++ T+
Sbjct: 161 L-KMGFIDDIEWILEHTPSERQLALFSATMPEQIKRVANQHLRNPVHVRIE-SSQTTVES 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V V+IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGVIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 279 NQQARERAVDQLK--RGKLDILIATD 302
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDAEAYVHRIGRTGRAGR---TGMAIL 346
>gi|225870075|ref|YP_002746022.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
4047]
gi|225699479|emb|CAW93007.1| DEAD box helicase family protein [Streptococcus equi subsp. equi
4047]
Length = 538
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGRDVIGQAQTGTGKTAAFGLPTLNKIRTADNTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ +VVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALKS-GAHVVVGTPGRLLDLIKRKALRLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ L + D++ I P +Q ++FSAT+ I+ + KFM DP V V ++ +LT
Sbjct: 153 DECL-NMGFLEDIEAIISRVPDDRQTLLFSATMPAPIKEIGVKFMKDPEHVQVKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQNKRLRVIRDFKNDQ--LDILVATD 297
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQLDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|307705294|ref|ZP_07642156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
gi|307621081|gb|EFO00156.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK597]
Length = 520
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFATMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|403381239|ref|ZP_10923296.1| DEAD/DEAH box helicase [Paenibacillus sp. JC66]
Length = 522
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 96/321 (29%), Positives = 169/321 (52%), Gaps = 36/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F DF L+P++L+AI + M E + +P
Sbjct: 4 FTDFGLEPKVLKAITE--------------MGFEEATPIQEKTIP--------------- 34
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
A+ G+D++ QA++G GKTA F + + ++ET+ S + LVMC TRELA Q+++E E
Sbjct: 35 ---LAMQGLDLIGQAQTGTGKTAAFSIPLIHKIETSQSKIVALVMCPTRELAIQVAEEIE 91
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
+ ++ I+ +GG I K LK PQI++GTPGR+L + K + L ++ +
Sbjct: 92 KLGRF-KGIRSLPIYGGQDIVKQIRALKKR-PQIIIGTPGRLLDHINRKTIRLEDVETVV 149
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML+ + D+Q I P + M+FSAT+ I+ + ++F+ DP V V +
Sbjct: 150 LDEADEMLD-MGFMEDIQAILSQVPEERHTMLFSATMPPNIQKLAQQFLRDPQHVSVIPK 208
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++ +QQ Y+++ E +K + L L+D+ + +IF ++ R LS L ++ + A
Sbjct: 209 -QVSAPLIQQAYIEVHEKQKFEALCRLIDMEAPDLAIIFGRTKRRVDELSEALQKRGYSA 267
Query: 382 VSIHRGMTQEERLKKYQEFKD 402
+H ++Q +R ++F+D
Sbjct: 268 EGLHGDLSQNQRDNVMRKFRD 288
Score = 55.5 bits (132), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+D+ V+ V N+D+P+D ++Y+HR+ R GR G +
Sbjct: 293 VLVATDVAARGLDVSGVSHVVNFDLPQDPESYVHRIGRTGRAGKEGT 339
>gi|307706894|ref|ZP_07643696.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
gi|307617767|gb|EFN96932.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK321]
Length = 524
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|307610952|emb|CBX00571.1| hypothetical protein LPW_22891 [Legionella pneumophila 130b]
Length = 468
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/244 (37%), Positives = 146/244 (59%), Gaps = 5/244 (2%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ QAK+G GKTA F L+ L L+ + V LV+C TRELA Q+S+ R + +M N+
Sbjct: 50 DLIAQAKTGSGKTAAFALSLLNNLKISFFAVQALVLCPTRELAEQVSQAIRRLACFMPNV 109
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
K+ GG+P+Q + L+ H I+VGTPGRIL ++N L+LS +K +LDE D+ML+
Sbjct: 110 KIINLSGGIPMQPQLDSLR-HGAHIIVGTPGRILKHLKNASLDLSQVKALVLDEADRMLD 168
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ D++ I P +Q ++FSAT +EI+ + K+FM +P EVYV E L ++
Sbjct: 169 -MGFFDDIKNIISVCPKQRQTLLFSATYPEEIKQLSKQFMKNPKEVYV--ETPLDEIDIE 225
Query: 331 QHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
QH+ ++ K+ +K L LL + V+IF + + I ++ L + F A++++ M
Sbjct: 226 QHFYEVTKQTQKFPLLKSLLLHYQPVSVLIFCNTKQQTIEVTDQLINEGFSAIALNGDME 285
Query: 390 QEER 393
Q ER
Sbjct: 286 QIER 289
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 37/57 (64%)
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LR ILVAT++ RG+DI+ ++ V N+D+ D D ++HR+ R GR G+K +
Sbjct: 293 VLRFANQSCSILVATDVAARGLDIKELSAVINFDLAFDHDVHIHRIGRTGRAGSKGI 349
>gi|158320253|ref|YP_001512760.1| DEAD/DEAH box helicase [Alkaliphilus oremlandii OhILAs]
gi|158140452|gb|ABW18764.1| DEAD/DEAH box helicase domain protein [Alkaliphilus oremlandii
OhILAs]
Length = 529
Score = 157 bits (396), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 89/254 (35%), Positives = 145/254 (57%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F + L+++ VL++ TREL+ Q++ E +FSKY+S
Sbjct: 42 GEDIIGQAQTGTGKTAAFGIPMLEKINPQQKTPQVLILAPTRELSMQVADEIRKFSKYLS 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
K +GG PI + + LK IVVGTPGRIL +R K L L + +LDE D+M
Sbjct: 102 GAKSIAIYGGQPIDRQIKALK-QGVNIVVGTPGRILDHIRRKTLRLDQIVGLVLDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I + +P +Q +MFSAT+ KEI + KK+M +P +V V + +LT+
Sbjct: 161 LD-MGFSDDIEAILQETPSERQTVMFSATMPKEIEEIAKKYMKNPKKVKVVHK-ELTVPK 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y +++ +EK L +LD+ +IF ++ L L + + IH +
Sbjct: 219 ISQYYFEVRPHEKLDALCRILDMENSELGIIFCRTKKGVDELVENLQSRGYSVEGIHGDL 278
Query: 389 TQEERLKKYQEFKD 402
Q +R + ++F+D
Sbjct: 279 KQSQRDRVMKKFRD 292
>gi|406577293|ref|ZP_11052907.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
gi|404460138|gb|EKA06419.1| ATP-dependent RNA helicase [Streptococcus sp. GMD6S]
Length = 525
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLKDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRTEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|417846630|ref|ZP_12492623.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
gi|339458263|gb|EGP70806.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1073]
Length = 524
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|381182260|ref|ZP_09891076.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
gi|380317854|gb|EIA21157.1| ATP-dependent RNA helicase DeaD [Listeriaceae bacterium TTU M1-001]
Length = 502
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L +Q+++ + +V L++ TRELA Q+S+E + S
Sbjct: 36 GLAGKDLIGQAQTGTGKTAAFGLPMIQKIDQKNGDVQALIIAPTRELAIQVSEELYKLS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK PQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 95 YDKHVRVLAVYGGSDISRQIRSLK-KKPQIVVGTPGRILDHINRRTLKLDNVQTLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMHDP V + + ++T
Sbjct: 154 DEML-NMGFIDDIESILKEVPSERQTLLFSATMPDPIRRIGERFMHDPEMVRIKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q ++K+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 212 ALLIEQFFIKVHEKEKFDVLSRLLDVQSPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 58.9 bits (141), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|417677313|ref|ZP_12326720.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|418155567|ref|ZP_12792295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|418157874|ref|ZP_12794590.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|418225966|ref|ZP_12852594.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
gi|332072754|gb|EGI83235.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17545]
gi|353820426|gb|EHE00612.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16242]
gi|353824322|gb|EHE04496.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16833]
gi|353881163|gb|EHE60977.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP112]
Length = 524
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|322377346|ref|ZP_08051837.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
gi|321281546|gb|EFX58555.1| putative ATP-dependent RNA helicase Exp9 (Exported protein 9)
[Streptococcus sp. M334]
Length = 524
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|358464311|ref|ZP_09174276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
gi|357067077|gb|EHI77207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus sp. oral
taxon 058 str. F0407]
Length = 524
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|296111234|ref|YP_003621616.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|339491490|ref|YP_004705995.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
gi|295832766|gb|ADG40647.1| ATP-dependent RNA helicase [Leuconostoc kimchii IMSNU 11154]
gi|338853162|gb|AEJ31372.1| ATP-dependent RNA helicase [Leuconostoc sp. C2]
Length = 532
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 149/254 (58%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q + E ++ +
Sbjct: 38 GRDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTADELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGSDIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLEDIESIIKNTPADRQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|326789718|ref|YP_004307539.1| DEAD/DEAH box helicase [Clostridium lentocellum DSM 5427]
gi|326540482|gb|ADZ82341.1| DEAD/DEAH box helicase domain protein [Clostridium lentocellum DSM
5427]
Length = 592
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 142/254 (55%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA +G GKT F + ++ ++TT+ V VL++C TREL Q ++E +KY
Sbjct: 43 GNDIIAQAPTGTGKTCAFGIPAIESVDTTNEKVQVLILCPTRELVIQTTEELSALAKYKR 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG I + LK PQI+VGTPGRI+ +R L L LK ILDE D+M
Sbjct: 103 GIRTLPIYGGQQIDRQIIALKKR-PQIIVGTPGRIMDHLRRGTLKLEHLKMIILDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + R D+ I S P +Q ++FSATL+K I + K+ ++P+ V V +LT+
Sbjct: 162 L-NMGFREDIDVILESVPEERQFVLFSATLAKAILDIANKYQNNPITVNV-VHKELTVPT 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+Y++++++ K + L L+D F V+F + R L L + + A S+H M
Sbjct: 220 VKQYYLEVRDSNKVEVLSRLIDANNFKLSVVFCNTKRRVDDLCRDLQARGYSAESLHGDM 279
Query: 389 TQEERLKKYQEFKD 402
Q +R F++
Sbjct: 280 KQLQRDNVMSRFRN 293
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
IL+AT++ RG+D++ V+ VFNYD+P D + Y+HR+ R GR + V
Sbjct: 298 ILIATDVAARGIDVDDVDAVFNYDVPSDEEYYVHRIGRTGRAQREGV 344
>gi|422616849|ref|ZP_16685554.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|440722426|ref|ZP_20902807.1| helicase [Pseudomonas syringae BRIP34876]
gi|440727518|ref|ZP_20907747.1| helicase [Pseudomonas syringae BRIP34881]
gi|443642939|ref|ZP_21126789.1| Putative ATP-dependent RNA helicase DeaD [Pseudomonas syringae pv.
syringae B64]
gi|330897234|gb|EGH28653.1| helicase [Pseudomonas syringae pv. japonica str. M301072]
gi|440361278|gb|ELP98510.1| helicase [Pseudomonas syringae BRIP34876]
gi|440363656|gb|ELQ00817.1| helicase [Pseudomonas syringae BRIP34881]
gi|443282956|gb|ELS41961.1| Putative ATP-dependent RNA helicase DeaD [Pseudomonas syringae pv.
syringae B64]
Length = 557
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P TKQ ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|421879169|ref|ZP_16310642.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
gi|390446968|emb|CCF26762.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C11]
Length = 522
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 151/254 (59%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ ++ N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILEHIDLSNKNIQALIVSPTRELAIQTAEELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLDDIESIIKNTPADRQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|383938412|ref|ZP_09991624.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
gi|418973302|ref|ZP_13521309.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383349699|gb|EID27622.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae ATCC
BAA-960]
gi|383714714|gb|EID70708.1| DEAD/DEAH box helicase [Streptococcus pseudopneumoniae SK674]
Length = 526
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|125717559|ref|YP_001034692.1| RNA helicase [Streptococcus sanguinis SK36]
gi|125497476|gb|ABN44142.1| RNA helicase, putative [Streptococcus sanguinis SK36]
Length = 488
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 155/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F TL++++T + V L++ TRELA Q +E RF +
Sbjct: 3 GKDVIGQAQTGTGKTAAFGFPTLEKIDTDNPAVQALIIAPTRELAVQSQEELFRFGRS-K 61
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE D+M
Sbjct: 62 GVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNQIETLILDEADEM 120
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 121 L-NMGFLEDIESIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELTTEL 178
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH +
Sbjct: 179 VDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIHGDL 238
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +RL+ ++FK+ + L + A+D
Sbjct: 239 DQGKRLRVLRDFKNGN--LDVLVATD 262
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 257 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 313
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 314 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKK 344
>gi|385259821|ref|ZP_10037981.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
gi|385193235|gb|EIF40614.1| DEAD/DEAH box helicase [Streptococcus sp. SK140]
Length = 525
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
G LQ +E + T E AFQ K
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKK 378
>gi|417923705|ref|ZP_12567162.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
gi|342836587|gb|EGU70798.1| DEAD/DEAH box helicase [Streptococcus mitis SK569]
Length = 525
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIATK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYLRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|170016724|ref|YP_001727643.1| putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|414596566|ref|ZP_11446140.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
gi|421876447|ref|ZP_16308004.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|169803581|gb|ACA82199.1| Putative ATP-dependent RNA helicase [Leuconostoc citreum KM20]
gi|372557740|emb|CCF24124.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
C10]
gi|390482587|emb|CCF28201.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc citreum LBAE
E16]
Length = 522
Score = 156 bits (395), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 86/254 (33%), Positives = 151/254 (59%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ ++ N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILEHIDLSNKNIQALIVSPTRELAIQTAEELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLDDIESIIKNTPADRQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYRAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 36/47 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVKDVTHVYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|418966957|ref|ZP_13518660.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
gi|383346061|gb|EID24135.1| DEAD/DEAH box helicase [Streptococcus mitis SK616]
Length = 523
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|421765661|ref|ZP_16202442.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
gi|407625746|gb|EKF52434.1| Cold-shock DEAD-box protein A [Lactococcus garvieae DCC43]
Length = 543
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 98/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L QA++G GKTA F L T++++ + + LV+ TRELA Q +E RF K
Sbjct: 35 ALSGRDVLGQAQTGTGKTAAFGLPTIEKINPENKAIQALVIAPTRELAVQGQEELFRFGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV FGG I+K + L++ IVVGTPGR++ L++ K L+LS L+ ILDE
Sbjct: 95 S-KGLKVRTVFGGSSIEKQIKALRS-GAHIVVGTPGRMVDLLKRKALDLSHLETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I +P +Q ++FSAT+ +I+ + KFM +P + + + ++T
Sbjct: 153 DEML-NMGFLEDIEFIIGKTPSERQTLLFSATMPNDIKKIGVKFMKNPEHIKIAAK-EMT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YVK KE EK L LLDV ++F ++ R ++ L + + A IH
Sbjct: 211 ADRIDQYYVKSKEFEKFDILTRLLDVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK H L I A+D
Sbjct: 271 GDLDQNKRLRVLRDFKGGH--LDILVATD 297
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAG 334
>gi|307709536|ref|ZP_07645990.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
gi|307619667|gb|EFN98789.1| DEAD/DEAH box helicase family protein [Streptococcus mitis SK564]
Length = 523
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|149244076|ref|XP_001526581.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
YB-4239]
gi|152032533|sp|A5DVM3.1|IF4A_LODEL RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
AltName: Full=Translation initiation factor 1
gi|146448975|gb|EDK43231.1| eukaryotic initiation factor 4A [Lodderomyces elongisporus NRRL
YB-4239]
Length = 397
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 160/321 (49%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 25 FDDLNLKPNIVRGI------------FGYG-----------YETPS---------AIQQR 52
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 53 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIKNVIT 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG + D E K+ QIVVGTPGR+ ++ + +K FI
Sbjct: 113 SIGLYL-NVTVHASIGGTSMSDDIEAFKS-GVQIVVGTPGRVFDMIERRYFRTDKVKMFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 171 LDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 229
Query: 322 AKLTLHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q+++ ++ E+ K L +L D + Q VIF + ++ L+ L EQ F
Sbjct: 230 -ELTLEGIKQYFINVEVEDYKFDCLVDLYDSISVTQAVIFCNTRSKVEFLTNKLREQKFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER +EF+
Sbjct: 289 VSAIHADLPQGERDTIMKEFR 309
Score = 48.9 bits (115), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/75 (36%), Positives = 47/75 (62%), Gaps = 7/75 (9%)
Query: 66 KQKEVKGAYVSIHS---SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFN 122
K +E K +IH+ G RD ++K R+ RIL++T+L RG+D+++V++V N
Sbjct: 281 KLREQKFTVSAIHADLPQGERDTIMKE--FRS--GSSRILISTDLLARGIDVQQVSLVIN 336
Query: 123 YDMPEDSDTYLHRVA 137
YD+P + + Y+HR+
Sbjct: 337 YDLPANKENYIHRIG 351
>gi|307702062|ref|ZP_07639069.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
gi|307616549|gb|EFN95739.1| ATP-dependent RNA helicase [Streptococcus mitis NCTC 12261]
Length = 521
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|419781258|ref|ZP_14307090.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
gi|383184650|gb|EIC77164.1| DEAD/DEAH box helicase [Streptococcus oralis SK100]
Length = 525
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKKQ 379
>gi|322391693|ref|ZP_08065161.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
gi|321145504|gb|EFX40897.1| ATP-dependent RNA helicase DeaD [Streptococcus peroris ATCC 700780]
Length = 523
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPKHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/98 (36%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
G LQ +E + T E AFQ K
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKK 378
>gi|325184962|emb|CCA19454.1| DEAD box ATPdependent RNA helicase putative [Albugo laibachii Nc14]
Length = 399
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 107/341 (31%), Positives = 169/341 (49%), Gaps = 52/341 (15%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
AV G D++ Q++SG GKTAVF ++ LQ + +T + LV+ TRELA Q K
Sbjct: 60 AVQGRDVIAQSQSGTGKTAVFSISILQTINSTSNETQALVISPTRELAEQTQKVMLALGD 119
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM N++ GG + +D L + Q+V GTPGRI ++R + L +K ++DE
Sbjct: 120 YM-NVQCHACIGGKSMGEDMRRLD-YGVQVVSGTPGRIFDMIRRRHLRTRTIKLLVIDEA 177
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + +I+R P + QV++ SAT+ +++ + KFM++P++V V + +LT
Sbjct: 178 DEMLNK-GFKDQIYDIYRYLPPSTQVLVVSATMPQDVLDLTTKFMNEPVKVLVKRD-ELT 235
Query: 326 LHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q +V +++ E K L +L D L Q VIF + + L+T + E NF S+
Sbjct: 236 LEGIKQFFVAVEQEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTTKMREANFTVSSM 295
Query: 385 HRGMTQEERLKKYQEFKD------------------------------------FH---- 404
H M Q ER QEF+ H
Sbjct: 296 HGDMPQRERDTIMQEFRSGGSRVLITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGR 355
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F DE D +IL +++ + I E+P I
Sbjct: 356 SGRFGRKGVAINFVKDE-DVRILRDIEQYYSTQIDEMPMNI 395
Score = 65.1 bits (157), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++GRG+D+++V++V YD+P + + Y+HR+ R+GRFG K V
Sbjct: 317 RVLITTDIWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGV 364
>gi|337281654|ref|YP_004621125.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|419799506|ref|ZP_14324847.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
gi|335369247|gb|AEH55197.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
15912]
gi|385697930|gb|EIG28331.1| DEAD/DEAH box helicase [Streptococcus parasanguinis F0449]
Length = 523
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 153/257 (59%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + +IF ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIIFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVLRDFKN 287
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGK---TGQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKQ 379
>gi|423070020|ref|ZP_17058796.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
gi|355366341|gb|EHG14059.1| ATP-dependent RNA helicase exp9 [Streptococcus intermedius F0413]
Length = 514
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + + LV+ TRELA Q +E RF +
Sbjct: 35 AMEGKDVIGQAQTGTGKTAAFGFPTLEKINTENPFIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVEILILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKDPTHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + + E AFQ K+
Sbjct: 349 G--------YLQIIESLTKKRMKGMKPASAEEAFQAKKK 379
>gi|399002672|ref|ZP_10705355.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
gi|398124587|gb|EJM14095.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM18]
Length = 557
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLTTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|167855120|ref|ZP_02477892.1| intracellular septation protein A [Haemophilus parasuis 29755]
gi|167853755|gb|EDS24997.1| intracellular septation protein A [Haemophilus parasuis 29755]
Length = 603
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/253 (35%), Positives = 139/253 (54%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ + +LVM TRELA Q++ E+FSK M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPEQRHPQMLVMAPTRELAIQVADACEQFSKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG LK + Q+VVGTPGRIL +R L+LS+LK +LDE D+M
Sbjct: 103 GIRTVTIYGGQRYDIQIRALK-NGVQVVVGTPGRILDHIRRGTLDLSMLKAIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + K+FM DP EV + + +
Sbjct: 162 L-RMGFIEDVETVMAELPEDHQTALFSATMPEPIRRITKRFMKDPQEVKIQATQR-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN L L+V EF+ +IF ++ T I ++ L + A +++ M
Sbjct: 220 IAQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDM 279
Query: 389 TQEERLKKYQEFK 401
TQ+ R + ++ K
Sbjct: 280 TQQAREQALEKLK 292
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
++VAT++ RG+DIER+++V NYD+P D+++Y+HR+ R GR G
Sbjct: 298 VIVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAG 340
>gi|344305098|gb|EGW35330.1| ATP-dependent RNA helicase [Spathaspora passalidarum NRRL Y-27907]
Length = 400
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/256 (35%), Positives = 144/256 (56%), Gaps = 4/256 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D + QA+SG GKTA F + LQ ++T + L++ TRELA QI + Y
Sbjct: 61 ISGKDTIAQAQSGTGKTATFSIGMLQVIDTKSHDCQALILSPTRELAVQIENVVKHLGDY 120
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M NI GG+ + +D + L+T PQIV GTPGR+L +++ + L+ +K ILDE D
Sbjct: 121 M-NIHTHALIGGINVGQDVKKLQTSQPQIVSGTPGRVLDVLKRRNLSPRHIKILILDEAD 179
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
++ + + + EI++ P QV++ SATLS E+ + KF DP+++ V + +++L
Sbjct: 180 ELFTK-GFKEQIYEIYKQLPPGAQVVVVSATLSPEVLEMTNKFTTDPVKILVKRD-EISL 237
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q+YV+ KE K L +L D L Q VIF + + L + +QNF V +H
Sbjct: 238 SGIKQYYVQCEKEEWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLVEQMRKQNFTVVGMH 297
Query: 386 RGMTQEERLKKYQEFK 401
M Q+ER +F+
Sbjct: 298 GDMKQDERDSIMNDFR 313
Score = 67.0 bits (162), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 39/47 (82%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
R+L++T+++ RG+D+++V++V NYD+P D + Y+HR+ R+GRFG K
Sbjct: 318 RVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRKG 364
>gi|282164729|ref|YP_003357114.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
gi|282157043|dbj|BAI62131.1| putative ATP-dependent RNA helicase [Methanocella paludicola SANAE]
Length = 471
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/258 (32%), Positives = 151/258 (58%), Gaps = 5/258 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F + ++ ++ ++ +V+ TRELA Q+++E R +
Sbjct: 36 ALAGKDVIGQAQTGTGKTAAFGIPMIENIDAGSGDIQGIVITPTRELAVQVAEELNRIGE 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFILDE 264
+ I +GG I++ LK PQI+VGTPGR++ ++R K ++L ++ +LDE
Sbjct: 96 F-RGIHTLPIYGGQDIKRQINGLK-RRPQIIVGTPGRLVDHMMRRKTISLKNIRTVVLDE 153
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML+ + D++EI + +P +Q ++FSAT+ IR + ++FM DP + + ++ +
Sbjct: 154 ADEMLD-MGFIEDIEEILKRTPEGRQTLLFSATIPAPIRKLAERFMKDPQTIGIKSKS-M 211
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ G +Q Y ++ E K + L LLDV ++FV++ R L+ L E+ +PA I
Sbjct: 212 TVSGTEQAYYEVPEKHKFEVLCRLLDVQLPALAIVFVRTKRRVDELTKALGERGYPAEGI 271
Query: 385 HRGMTQEERLKKYQEFKD 402
H + Q +R + FK+
Sbjct: 272 HGDLAQSKRDSVMRGFKE 289
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N D+P+D D+Y+HR+ R GR G K
Sbjct: 294 VLVATDVAARGLDISGVTHVYNLDIPQDPDSYVHRIGRTGRAGKKGT 340
>gi|289167533|ref|YP_003445802.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
gi|288907100|emb|CBJ21934.1| superfamily II DNA and RNA helicases ATP-dependent RNA helicase,
DEAD-box family [Streptococcus mitis B6]
Length = 521
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L + ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIGTLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|366166269|ref|ZP_09466024.1| DEAD/DEAH box helicase [Acetivibrio cellulolyticus CD2]
Length = 544
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 88/267 (32%), Positives = 153/267 (57%), Gaps = 7/267 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA++G GKT F + ++ L+ + + VL++ TRELA QIS+E SKY
Sbjct: 41 GIDLIGQAQTGTGKTCAFGIPAIEMLDPQNEGIQVLILSPTRELAIQISEELRDVSKYKE 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
IK+ +GG PI + LK PQI++GTPGRI+ +R + L L+ LK ILDE D+M
Sbjct: 101 GIKILPVYGGQPIDRQIAALKKR-PQIIIGTPGRIMDHMRRRTLKLADLKMLILDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + R D+ I P KQ ++FSAT+ KEI + K++ +P+ + + ++T+
Sbjct: 160 L-NMGFREDIDTILEKVPEEKQTILFSATMPKEILDLTSKYLKNPLHIKAAHK-QMTVPS 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y+++ ++ K + L L+D ++F + + L++ L + + ++H M
Sbjct: 218 IEQFYLEVSQSSKLEILSRLIDANNIGLSLVFCNTKRQVDELTSSLQSRGYSTEALHGDM 277
Query: 389 TQEERLKKYQEFKDFHKG-LAITFASD 414
Q++R + +F+ KG + I A+D
Sbjct: 278 KQDQRNRVMTKFR---KGQIDILIATD 301
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
IL+AT++ RG+D++ V VFNYD+P D + Y+HR+ R GR G
Sbjct: 296 ILIATDVAARGIDVDNVEAVFNYDLPSDEEYYVHRIGRTGRAG 338
>gi|306825666|ref|ZP_07459005.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
gi|304432027|gb|EFM35004.1| ATP-dependent RNA helicase [Streptococcus sp. oral taxon 071 str.
73H25AP]
Length = 518
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPDSRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|261492525|ref|ZP_05989078.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
BOVINE]
gi|261496800|ref|ZP_05993174.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261307547|gb|EEY08876.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
OVINE]
gi|261311684|gb|EEY12834.1| ATP-dependent RNA helicase [Mannheimia haemolytica serotype A2 str.
BOVINE]
Length = 601
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 3/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ T + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+V +GG LK Q+VVGTPGRIL +R L+LS LK +LDE D+M
Sbjct: 103 GIRVVTVYGGQRYDIQLRALK-QGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P T Q +FSAT+ + IR + ++FM DP EV + + +
Sbjct: 162 L-RMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATER-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y + KN L L+V EF+ +IF ++ T I ++ L + +++ M
Sbjct: 220 IEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDM 279
Query: 389 TQEER 393
TQ+ R
Sbjct: 280 TQQAR 284
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DIER+++V NYD+P + ++Y+HR+ R GR G
Sbjct: 298 ILVATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAG 340
>gi|402701488|ref|ZP_10849467.1| cold-shock dead-box protein A [Pseudomonas fragi A22]
Length = 557
Score = 156 bits (394), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEAIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|323490564|ref|ZP_08095770.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
gi|323395830|gb|EGA88670.1| ATP-dependent RNA helicase exp9 [Planococcus donghaensis MPA1U2]
Length = 506
Score = 156 bits (394), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 19/285 (6%)
Query: 129 SDTYLHRVARAG------------RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
S+T L V R G R G + G DI+ QA++G GKT F + +++++T
Sbjct: 10 SETTLKSVKRMGFEEATPIQEGTIRLGME---GKDIIGQAQTGTGKTTAFGIPLIEKIDT 66
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
D NV L++ TRELA Q+S+E R + N+++ +GG I + LK + PQI+
Sbjct: 67 KDGNVQGLIIAPTRELAIQVSEELYRLGQD-KNVRILSVYGGQEISRQIRALK-NRPQII 124
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGR+L + + L L + ILDE D+ML + D+Q I S P T+Q ++FSA
Sbjct: 125 VGTPGRLLDHINRRTLKLDNVNTLILDEADEML-NMGFIEDIQTIMASVPDTRQTLLFSA 183
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
T+ IR + +KFM P E+ ++T+ ++Q YVK E EK L LL+V +
Sbjct: 184 TMPDAIRRIAEKFMKTP-EIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPEL 242
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
++F ++ R L+ L+ + + A IH ++Q +R+ ++FK
Sbjct: 243 AIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFK 287
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 293 ILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGV 339
>gi|254361250|ref|ZP_04977393.1| superfamily II helicase [Mannheimia haemolytica PHL213]
gi|452745243|ref|ZP_21945079.1| cold-shock DEAD box protein A-like protein [Mannheimia haemolytica
serotype 6 str. H23]
gi|110735365|gb|ABG89253.1| ATP-dependent RNA helicase [Mannheimia haemolytica]
gi|153092746|gb|EDN73789.1| superfamily II helicase [Mannheimia haemolytica PHL213]
gi|452086636|gb|EME03023.1| cold-shock DEAD box protein A-like protein [Mannheimia haemolytica
serotype 6 str. H23]
Length = 602
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 90/245 (36%), Positives = 136/245 (55%), Gaps = 3/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ T + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPTQRHPQMLVMAPTRELAIQVADACEQFAKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+V +GG LK Q+VVGTPGRIL +R L+LS LK +LDE D+M
Sbjct: 103 GIRVVTVYGGQRYDIQLRALK-QGSQVVVGTPGRILDHIRRGTLDLSELKFIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P T Q +FSAT+ + IR + ++FM DP EV + + +
Sbjct: 162 L-RMGFIDDVETVMAELPETHQTALFSATMPEPIRRITRRFMKDPQEVKIKATER-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y + KN L L+V EF+ +IF ++ T I ++ L + +++ M
Sbjct: 220 IEQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDM 279
Query: 389 TQEER 393
TQ+ R
Sbjct: 280 TQQAR 284
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DIER+++V NYD+P + ++Y+HR+ R GR G
Sbjct: 298 ILVATDVAARGIDIERISLVINYDIPLEEESYVHRIGRTGRAG 340
>gi|417940539|ref|ZP_12583827.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
gi|343389420|gb|EGV02005.1| DEAD/DEAH box helicase [Streptococcus oralis SK313]
Length = 518
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPDSRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|417850281|ref|ZP_12496192.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
gi|339452963|gb|EGP65581.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus mitis
SK1080]
Length = 524
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|449676771|ref|XP_002166522.2| PREDICTED: eukaryotic initiation factor 4A-III-like [Hydra
magnipapillata]
Length = 406
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 100/275 (36%), Positives = 150/275 (54%), Gaps = 9/275 (3%)
Query: 132 YLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187
Y + R +A++ G D++ QA+SG GKTA F +A LQQ++T VLV+
Sbjct: 49 YAYGFERPSAIQQRAIIPIIKGRDVIAQAQSGTGKTATFSIAALQQIDTRLRETQVLVLS 108
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
TRELA QI K YMS I+ GG I +D L + IV GTPGR+ ++
Sbjct: 109 PTRELACQIQKVVLALGDYMS-IQCHACIGGTNIGEDIRKLD-YGQHIVSGTPGRVFDMI 166
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
+ + L +K ILDE D+ML + + + +++R P QV++ SATL EI + +
Sbjct: 167 KRRNLRTRSIKLLILDESDEMLNK-GFKEQIYDVYRFLPPATQVVLVSATLPHEILEMTQ 225
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTR 366
KFM DP+ + V + +LTL G++Q +V + +E K + L +L D L Q VIF + +
Sbjct: 226 KFMTDPIRILVKRD-ELTLEGIKQFFVAVEREEWKFETLCDLYDTLTITQAVIFCNTKRK 284
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
L+ + E NF VS+H M Q+ER +EF+
Sbjct: 285 VDWLTEKMRESNFTVVSMHGDMPQKERDSIMKEFR 319
Score = 63.5 bits (153), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V++V NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 324 RVLISTDVWSRGLDVPQVSLVINYDLPNNRELYIHRIGRSGRYGRKGV 371
>gi|385832194|ref|YP_005869969.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
gi|343181347|dbj|BAK59685.1| ATP-dependent RNA helicase [Lactococcus garvieae Lg2]
Length = 534
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L QA++G GKTA F L T++++ + + LV+ TRELA Q +E RF K
Sbjct: 35 ALSGRDVLGQAQTGTGKTAAFGLPTIEKINPENKAIQALVIAPTRELAVQGQEELFRFGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV FGG I+K + L++ IVVGTPGR++ L++ K L+LS L+ ILDE
Sbjct: 95 S-KGLKVRTVFGGSSIEKQIKALRS-GAHIVVGTPGRMVDLLKRKALDLSHLETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I +P +Q ++FSAT+ +I+ + KFM +P + V + ++T
Sbjct: 153 DEML-NMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK-EMT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+++K KE EK L LLDV ++F ++ R ++ L + + A IH
Sbjct: 211 ADRIDQYFIKTKEFEKFDVLTRLLDVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK H L I A+D
Sbjct: 271 GDLDQNKRLRVLRDFKGGH--LDILVATD 297
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAG 334
>gi|450088713|ref|ZP_21854900.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
gi|450134981|ref|ZP_21871150.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449148899|gb|EMB52727.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML8]
gi|449216305|gb|EMC16436.1| putative ATP-dependent RNA helicase [Streptococcus mutans NV1996]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ ++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|418202809|ref|ZP_12839238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
gi|353867366|gb|EHE47261.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52306]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 28 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 87
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 88 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQNIETLILDEA 145
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 146 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 203
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 204 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 263
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 264 GDLDQNKRLRVLRDFKNGN--LDVLVATD 290
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 285 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 341
Query: 161 G 161
G
Sbjct: 342 G 342
>gi|449961479|ref|ZP_21810850.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|450141452|ref|ZP_21873112.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
gi|450146360|ref|ZP_21874902.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449148357|gb|EMB52237.1| putative ATP-dependent RNA helicase [Streptococcus mutans 1ID3]
gi|449166365|gb|EMB69307.1| putative ATP-dependent RNA helicase [Streptococcus mutans 4VF1]
gi|449230998|gb|EMC30227.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML1]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ ++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|398936027|ref|ZP_10666812.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
gi|407365375|ref|ZP_11111907.1| cold-shock dead-box protein A [Pseudomonas mandelii JR-1]
gi|398168863|gb|EJM56865.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM41(2012)]
Length = 557
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|419521514|ref|ZP_14061109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
gi|379538814|gb|EHZ03994.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05245]
Length = 524
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQNIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|450128837|ref|ZP_21869087.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
gi|449229216|gb|EMC28542.1| ATP-dependent RNA helicase [Streptococcus mutans U2A]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ ++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|424924182|ref|ZP_18347543.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
gi|404305342|gb|EJZ59304.1| Superfamily II DNA and RNA helicase [Pseudomonas fluorescens R124]
Length = 557
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPSTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|419495771|ref|ZP_14035488.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|421302943|ref|ZP_15753607.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
gi|379593857|gb|EHZ58668.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47461]
gi|395901565|gb|EJH12501.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA17484]
Length = 519
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|47210962|emb|CAG13351.1| unnamed protein product [Tetraodon nigroviridis]
Length = 761
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 92/264 (34%), Positives = 142/264 (53%), Gaps = 11/264 (4%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + VLV+ TRE+A QI M
Sbjct: 64 GLDLIVQAKSGTGKTCVFCTIALDSLVLENPATQVLVLAPTREIAVQIHSVVMAIGCAME 123
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ +LK + I VG+PGRI L+ L+ S ++ F+LDE DK+
Sbjct: 124 GLECHVFIGGRPVSQDKHHLKKCH--IAVGSPGRIKQLIELGILSTSSIRLFVLDEADKL 181
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + IF S P KQ++ SAT + + ++M +P V ++ + L G
Sbjct: 182 LEEGSFQEQINWIFSSLPENKQMLALSATYPESLAQQLTRYMREPTFVRLNPN-DMGLKG 240
Query: 329 LQQHYVKLKEN--------EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y ++ + EK + L EL + FNQ ++F TR LS +LS + P
Sbjct: 241 LKQYYKLVQSHSLPHKVFEEKVQHLLELFSKIPFNQALVFSNLHTRAQHLSDILSSKGLP 300
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH 404
AV I G+TQ++RL+ + K +
Sbjct: 301 AVCISGGLTQDQRLEAMSKLKQYQ 324
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
R+L++T+L RG+D ++VN+V N D+P+D +TY+HR+ RAGRFGT+ L + C +
Sbjct: 326 RVLISTDLTSRGIDADKVNLVINLDLPQDWETYMHRIGRAGRFGTQG-LAVTYCCHGE 382
>gi|319947383|ref|ZP_08021615.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|417918982|ref|ZP_12562526.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
gi|319746323|gb|EFV98584.1| ATP-dependent RNA helicase DeaD [Streptococcus australis ATCC
700641]
gi|342835133|gb|EGU69390.1| DEAD/DEAH box helicase [Streptococcus australis ATCC 700641]
Length = 524
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D+++I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEDIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|289677204|ref|ZP_06498094.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal, partial [Pseudomonas syringae pv. syringae
FF5]
Length = 379
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 10 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 69
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 70 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 128
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P TKQ ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 129 L-KLGFMDDLEVIFKAMPETKQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 186
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 187 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 246
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 247 AQNQRERVIESLKDGR--LDIVVATD 270
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 265 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 307
>gi|347520831|ref|YP_004778402.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
gi|343179399|dbj|BAK57738.1| ATP-dependent RNA helicase [Lactococcus garvieae ATCC 49156]
Length = 539
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L QA++G GKTA F L T++++ + + LV+ TRELA Q +E RF K
Sbjct: 35 ALSGRDVLGQAQTGTGKTAAFGLPTIEKINPENKAIQALVIAPTRELAVQGQEELFRFGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV FGG I+K + L++ IVVGTPGR++ L++ K L+LS L+ ILDE
Sbjct: 95 S-KGLKVRTVFGGSSIEKQIKALRS-GAHIVVGTPGRMVDLLKRKALDLSHLETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I +P +Q ++FSAT+ +I+ + KFM +P + V + ++T
Sbjct: 153 DEML-NMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK-EMT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+++K KE EK L LLDV ++F ++ R ++ L + + A IH
Sbjct: 211 ADRIDQYFIKTKEFEKFDVLTRLLDVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK H L I A+D
Sbjct: 271 GDLDQNKRLRVLRDFKGGH--LDILVATD 297
Score = 55.1 bits (131), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAG 334
>gi|400290741|ref|ZP_10792768.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
gi|399921532|gb|EJN94349.1| ATP-dependent RNA helicase [Streptococcus ratti FA-1 = DSM 20564]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ + V LV+ TRELA Q +E RF +
Sbjct: 35 ALAGKDVIGQAQTGTGKTAAFGLPTLNKINIASNLVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLIDVEQPDLAIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNDN--LDILVATD 297
Score = 62.0 bits (149), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I +
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T E AFQ SK+
Sbjct: 345 PNEMG--------YLQIIENLTKKRMKGMKPATAEEAFQASKK 379
>gi|389818136|ref|ZP_10208577.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
gi|388464068|gb|EIM06404.1| ATP-dependent RNA helicase exp9 [Planococcus antarcticus DSM 14505]
Length = 507
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 98/285 (34%), Positives = 156/285 (54%), Gaps = 19/285 (6%)
Query: 129 SDTYLHRVARAG------------RFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET 176
S+T L V R G R G + G DI+ QA++G GKT F + +++++T
Sbjct: 10 SETTLKSVKRMGFEEATPIQEGTIRLGME---GKDIIGQAQTGTGKTTAFGIPLIEKIDT 66
Query: 177 TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
D NV L++ TRELA Q+S+E R + N+++ +GG I + LK + PQI+
Sbjct: 67 KDGNVQGLIIAPTRELAIQVSEELYRLGQD-KNVRILSVYGGQEISRQIRALK-NRPQII 124
Query: 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296
VGTPGR+L + + L L + ILDE D+ML + D+Q I S P T+Q ++FSA
Sbjct: 125 VGTPGRLLDHINRRTLKLDNVNTLILDEADEML-NMGFIEDIQTIMASVPDTRQTLLFSA 183
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356
T+ IR + +KFM P E+ ++T+ ++Q YVK E EK L LL+V +
Sbjct: 184 TMPDAIRRIAEKFMKTP-EIVKIKSKEMTVENIEQFYVKSVEREKFDFLSRLLNVQQPEL 242
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
++F ++ R L+ L+ + + A IH ++Q +R+ ++FK
Sbjct: 243 AIVFGRTKRRVDELAKALNIRGYLAEGIHGDLSQAKRMSVLKQFK 287
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 36/47 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 293 ILVATDVAARGLDISGVSHVYNFDIPQDPESYVHRIGRTGRAGKKGV 339
>gi|450005719|ref|ZP_21826823.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
gi|449188314|gb|EMB90034.1| putative ATP-dependent RNA helicase [Streptococcus mutans NMT4863]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ ++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMG 161
+ MG
Sbjct: 345 PNEMG 349
>gi|398855296|ref|ZP_10611793.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
gi|398232144|gb|EJN18120.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM80]
Length = 557
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|421307797|ref|ZP_15758439.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
gi|395907182|gb|EJH18076.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60132]
Length = 524
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQNIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|398991110|ref|ZP_10694265.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
gi|399011181|ref|ZP_10713514.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398118519|gb|EJM08250.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM16]
gi|398141395|gb|EJM30318.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM24]
Length = 557
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|322389137|ref|ZP_08062700.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
gi|321144179|gb|EFX39594.1| ATP-dependent RNA helicase DeaD [Streptococcus parasanguinis ATCC
903]
Length = 523
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|415749990|ref|ZP_11477934.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
gi|381318284|gb|EIC59009.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SV35]
Length = 511
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|417917647|ref|ZP_12561206.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
gi|342830284|gb|EGU64623.1| DEAD/DEAH box helicase [Streptococcus parasanguinis SK236]
Length = 523
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGK---TGQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKQ 379
>gi|421241060|ref|ZP_15697605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
gi|395607438|gb|EJG67535.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080913]
Length = 524
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|66046848|ref|YP_236689.1| helicase [Pseudomonas syringae pv. syringae B728a]
gi|302187695|ref|ZP_07264368.1| helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Pseudomonas syringae pv. syringae 642]
gi|422674590|ref|ZP_16733942.1| helicase [Pseudomonas syringae pv. aceris str. M302273]
gi|424068764|ref|ZP_17806213.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
gi|63257555|gb|AAY38651.1| Helicase, C-terminal:DbpA, RNA-binding:DEAD/DEAH box helicase,
N-terminal [Pseudomonas syringae pv. syringae B728a]
gi|330972316|gb|EGH72382.1| helicase [Pseudomonas syringae pv. aceris str. M302273]
gi|407996573|gb|EKG37040.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. avellanae str. ISPaVe013]
Length = 557
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|418171721|ref|ZP_12808345.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|419451027|ref|ZP_13991013.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
gi|353835458|gb|EHE15552.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19451]
gi|379622732|gb|EHZ87366.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP02]
Length = 517
Score = 155 bits (393), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 28 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 87
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 88 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 145
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 146 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 203
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 204 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 263
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 264 GDLDQNKRLRVLRDFKNGN--LDVLVATD 290
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 285 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 341
Query: 161 G 161
G
Sbjct: 342 G 342
>gi|414157194|ref|ZP_11413494.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
gi|410868510|gb|EKS16475.1| hypothetical protein HMPREF9186_01914 [Streptococcus sp. F0442]
Length = 523
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|419482639|ref|ZP_14022426.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
gi|379579231|gb|EHZ44138.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40563]
Length = 517
Score = 155 bits (392), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 28 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 87
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 88 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 145
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 146 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 203
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 204 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 263
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 264 GDLDQNKRLRVLRDFKNGN--LDVLVATD 290
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 285 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 341
Query: 161 G 161
G
Sbjct: 342 G 342
>gi|387879215|ref|YP_006309518.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
gi|386792669|gb|AFJ25704.1| ATP-dependent RNA helicase [Streptococcus parasanguinis FW213]
Length = 523
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TDLVDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGK---TGQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKQ 379
>gi|326802990|ref|YP_004320808.1| delta 1-pyrroline-5-carboxylate dehydrogenase domain-containing
protein [Aerococcus urinae ACS-120-V-Col10a]
gi|326651469|gb|AEA01652.1| DEAD-box ATP-dependent RNA helicase CshA [Aerococcus urinae
ACS-120-V-Col10a]
Length = 508
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 100/294 (34%), Positives = 166/294 (56%), Gaps = 9/294 (3%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L QA++G GKTA F L L++++ ++ LV+ TRELA Q +E R K
Sbjct: 35 ALEGRDVLGQAQTGTGKTAAFGLPLLEKIDHHTEHIQALVIAPTRELAIQNGQELYRLGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
V V +GG I++ +K P +VVGTPGR++ L++ K LNL+ ++ +LDE
Sbjct: 95 EKGVRTVNV-YGGANIRRQIHQIKKGAP-VVVGTPGRLIDLMKRKVLNLNFIETLVLDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-L 324
D+ML + D++ I R++P +Q ++FSAT+ KEI+ + + FM DP+ V + EAK +
Sbjct: 153 DEML-NMGFIEDIETIIRATPSNRQTLLFSATMPKEIQRIGEHFMQDPVTVKI--EAKEM 209
Query: 325 TLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T + Q++ K + EK L +DV ++F ++ R +S L E+ + A I
Sbjct: 210 TADTIDQYFTKCHDREKFDLLTRFIDVSHAKLAIVFARTKRRVDEVSRGLIERGYQAEGI 269
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
H ++QE+R ++FKD L I A+D + ++NV ++ I + P+
Sbjct: 270 HGDLSQEKRSSIMKDFKDGR--LEILVATDVAARGLDISNVTHVYNYDIPQDPE 321
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G GM I + M
Sbjct: 292 ILVATDVAARGLDISNVTHVYNYDIPQDPESYVHRIGRTGRAGKG---GMSITFVSNHEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|149022054|ref|ZP_01836016.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|418103285|ref|ZP_12740357.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|419475927|ref|ZP_14015764.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|419487070|ref|ZP_14026832.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|421209364|ref|ZP_15666377.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|421225425|ref|ZP_15682163.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
gi|147929898|gb|EDK80887.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP23-BS72]
gi|353774586|gb|EHD55073.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP070]
gi|379559023|gb|EHZ24054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14688]
gi|379585439|gb|EHZ50295.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44128]
gi|395573460|gb|EJG34050.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070005]
gi|395588912|gb|EJG49234.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070768]
Length = 511
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|289422689|ref|ZP_06424529.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
gi|289156868|gb|EFD05493.1| cold-shock DEAD box protein A [Peptostreptococcus anaerobius 653-L]
Length = 547
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + L++++ +D + +V+C TRELA Q+S+E + +KY+
Sbjct: 41 GYDVIGQAQTGTGKTAAFSIPLLEKIDPSDKRLQAIVLCPTRELAIQVSEEVRKLAKYLH 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+K +GG PI + + LK Q+++GTPGR++ + K L S +K ++DE D+M
Sbjct: 101 GVKTLPIYGGQPIDRQIKALK-GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++ I S+P +Q +FSAT+ K I + +K+ +P+ + V +LT++
Sbjct: 160 LD-MGFREDIETILSSTPQERQTSLFSATMPKAILELTQKYQKEPVHIKV-VRKELTVNN 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y++ +++ K + L L+DV V+F + L + L + + A S+H +
Sbjct: 218 IKQFYIETRKSNKLEVLTRLIDVYNPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDL 277
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R +F+ H + I A+D
Sbjct: 278 KQVQRDIVMDKFR--HGTIDILVATD 301
Score = 55.5 bits (132), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V V NY++P+D + Y+HR+ R GR G +
Sbjct: 296 ILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGI 342
>gi|444398031|ref|ZP_21195514.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
gi|444260688|gb|ELU66996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0006]
Length = 501
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|149012680|ref|ZP_01833656.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168483538|ref|ZP_02708490.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|169832933|ref|YP_001694988.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|194396853|ref|YP_002038215.1| ATP-dependent RNA helicase [Streptococcus pneumoniae G54]
gi|225857209|ref|YP_002738720.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|225859340|ref|YP_002740850.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|418087275|ref|ZP_12724444.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|418112928|ref|ZP_12749928.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|418121655|ref|ZP_12758598.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|418162615|ref|ZP_12799297.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|418176382|ref|ZP_12812973.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|418200618|ref|ZP_12837061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|418219306|ref|ZP_12845971.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|418239122|ref|ZP_12865673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|419442942|ref|ZP_13982969.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|419455950|ref|ZP_13995907.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|419460394|ref|ZP_14000322.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|419462742|ref|ZP_14002645.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|419491499|ref|ZP_14031237.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|419523966|ref|ZP_14063541.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|419526295|ref|ZP_14065854.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|419532799|ref|ZP_14072314.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|421207032|ref|ZP_15664084.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|421230207|ref|ZP_15686871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|421236689|ref|ZP_15693286.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|421268751|ref|ZP_15719620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|421275311|ref|ZP_15726140.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|421285836|ref|ZP_15736612.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|421292475|ref|ZP_15743209.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|421312409|ref|ZP_15763011.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444409691|ref|ZP_21206276.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444412727|ref|ZP_21209046.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444415144|ref|ZP_21211388.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444423615|ref|ZP_21219207.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
gi|147763280|gb|EDK70218.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP19-BS75]
gi|168995435|gb|ACA36047.1| DEAD/DEAH box helicase [Streptococcus pneumoniae Hungary19A-6]
gi|172043152|gb|EDT51198.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1873-00]
gi|194356520|gb|ACF54968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae G54]
gi|225721382|gb|ACO17236.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 70585]
gi|225724473|gb|ACO20325.1| cold-shock DEAD box protein A [Streptococcus pneumoniae P1031]
gi|353758291|gb|EHD38883.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47033]
gi|353783290|gb|EHD63719.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41538]
gi|353792491|gb|EHD72863.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44194]
gi|353827127|gb|EHE07281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17328]
gi|353840453|gb|EHE20517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41437]
gi|353864159|gb|EHE44077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47976]
gi|353873666|gb|EHE53525.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP127]
gi|353892113|gb|EHE71862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NorthCarolina6A-23]
gi|379530174|gb|EHY95414.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02714]
gi|379530530|gb|EHY95769.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02270]
gi|379551642|gb|EHZ16736.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13224]
gi|379556374|gb|EHZ21429.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13723]
gi|379557540|gb|EHZ22584.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14373]
gi|379592861|gb|EHZ57676.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47179]
gi|379605319|gb|EHZ70070.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47794]
gi|379627926|gb|EHZ92532.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP04]
gi|395574368|gb|EJG34946.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2090008]
gi|395593733|gb|EJG53975.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061376]
gi|395601452|gb|EJG61599.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071004]
gi|395869005|gb|EJG80121.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR95]
gi|395873275|gb|EJG84367.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA52612]
gi|395885823|gb|EJG96844.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60190]
gi|395891782|gb|EJH02776.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56348]
gi|395909263|gb|EJH20139.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58981]
gi|444273966|gb|ELU79621.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0153]
gi|444278936|gb|ELU84355.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0076]
gi|444280573|gb|ELU85935.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0199]
gi|444286587|gb|ELU91558.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0446]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQNIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|342164201|ref|YP_004768840.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
gi|341934083|gb|AEL10980.1| cold-shock DEAD box protein A [Streptococcus pseudopneumoniae
IS7493]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGRS-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE D+M
Sbjct: 97 GVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 156 L-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELTTEL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH +
Sbjct: 214 VDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +RL+ ++FK+ + L + A+D
Sbjct: 274 DQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|417687029|ref|ZP_12336303.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|418160286|ref|ZP_12796985.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
gi|332073919|gb|EGI84397.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41301]
gi|353822019|gb|EHE02195.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17227]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQNIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDIAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|417753019|ref|ZP_12401172.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
gi|333770963|gb|EGL47936.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
dysgalactiae subsp. equisimilis SK1249]
Length = 539
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 151/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T+++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTSENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|148643558|ref|YP_001274071.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222444945|ref|ZP_03607460.1| hypothetical protein METSMIALI_00561 [Methanobrevibacter smithii
DSM 2375]
gi|261350482|ref|ZP_05975899.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
gi|148552575|gb|ABQ87703.1| helicase [Methanobrevibacter smithii ATCC 35061]
gi|222434510|gb|EEE41675.1| DEAD/DEAH box helicase [Methanobrevibacter smithii DSM 2375]
gi|288861264|gb|EFC93562.1| ATP-dependent RNA helicase DeaD [Methanobrevibacter smithii DSM
2374]
Length = 429
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 86/269 (31%), Positives = 154/269 (57%), Gaps = 5/269 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G+DI+ QA++G GKT F + LQ++ D++ +V+C TREL Q++ E +
Sbjct: 38 ALKGIDIIGQAQTGTGKTLAFTVPLLQKIFIPDNSPQAIVLCPTRELCIQVAGEIGKIGS 97
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M +K+ +GG PI + L +V+GTPGR+L + K L+L + +LDE
Sbjct: 98 HMKKLKILPVYGGQPIGRQIRVL-NKGVHVVIGTPGRVLDHIERKTLDLKGISTVVLDEA 156
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + R D+++I R +P +Q ++FSAT+ KEI+ + K + P + V ++++T
Sbjct: 157 DEMLD-MGFREDIEKILRHTPKQRQTLLFSATMPKEIKRITKFYQKKPKHLKV-AQSQMT 214
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ + Q+Y + KE +K + L L+DV + N ++F + R ++ L + + A IH
Sbjct: 215 VPEITQYYFETKEKDKLENLTRLIDVYDVNLGLVFCNTKKRVDWVAKNLRNRGYAAEGIH 274
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
M Q+ R K +F++ + + I A+D
Sbjct: 275 GDMNQKSRDKVMNKFRNGN--IEILIATD 301
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 20/43 (46%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
IL+AT++ RG+D+ V +V NYD+P++ + Y+HR+ R GR G
Sbjct: 296 ILIATDVAARGIDVPNVEVVVNYDVPQNPEYYVHRIGRTGRAG 338
>gi|148984940|ref|ZP_01818193.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|307127794|ref|YP_003879825.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|387757824|ref|YP_006064803.1| DEAD/DEAH box helicase [Streptococcus pneumoniae OXC141]
gi|418133033|ref|ZP_12769904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|418232585|ref|ZP_12859172.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|418237043|ref|ZP_12863610.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|419467196|ref|ZP_14007077.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|419480433|ref|ZP_14020238.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|419500133|ref|ZP_14039827.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|419512979|ref|ZP_14052611.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|419517184|ref|ZP_14056800.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|421283724|ref|ZP_15734510.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|421299049|ref|ZP_15749736.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|147922962|gb|EDK74078.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP3-BS71]
gi|301800413|emb|CBW33045.1| DEAD box helicase family protein [Streptococcus pneumoniae OXC141]
gi|306484856|gb|ADM91725.1| cold-shock DEAD box protein A [Streptococcus pneumoniae 670-6B]
gi|353804916|gb|EHD85194.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11304]
gi|353887312|gb|EHE67092.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07228]
gi|353892004|gb|EHE71754.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19690]
gi|379542943|gb|EHZ08095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05248]
gi|379570387|gb|EHZ35351.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19101]
gi|379599441|gb|EHZ64224.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47597]
gi|379634144|gb|EHZ98709.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA05578]
gi|379639257|gb|EIA03801.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02506]
gi|395880410|gb|EJG91462.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA04216]
gi|395900520|gb|EJH11458.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA60080]
gi|429316448|emb|CCP36148.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034156]
gi|429321608|emb|CCP35074.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994039]
gi|429323428|emb|CCP31115.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN994038]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|50421181|ref|XP_459136.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
gi|74659326|sp|Q6BRN4.1|IF4A_DEBHA RecName: Full=ATP-dependent RNA helicase eIF4A; AltName:
Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
AltName: Full=Translation initiation factor 1
gi|49654803|emb|CAG87307.1| DEHA2D15048p [Debaryomyces hansenii CBS767]
Length = 397
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 160/321 (49%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 25 FDDLNLKPNIVRGI------------FGYG-----------YESPS---------AIQQR 52
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 53 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVIT 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG ++ D E K+ QIVVGTPGR+ ++ + +K FI
Sbjct: 113 HIGLYL-NVTVHASIGGTSMKDDIEAFKS-GVQIVVGTPGRVFDMIERRFFKTDKVKMFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 171 LDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 229
Query: 322 AKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q Y+ + +E+ K L +L D + Q VIF + ++ L+T L +NF
Sbjct: 230 -ELTLEGIKQFYINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTTKLKGENFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q +R EF+
Sbjct: 289 VSAIHADLPQADRDTIMNEFR 309
Score = 47.0 bits (110), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 351
>gi|429728801|ref|ZP_19263505.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
gi|429147776|gb|EKX90798.1| putative DEAD-box ATP-dependent RNA helicase CshA
[Peptostreptococcus anaerobius VPI 4330]
Length = 547
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/266 (31%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + L++++ +D + +V+C TRELA Q+S+E + +KY+
Sbjct: 41 GYDVIGQAQTGTGKTAAFSIPLLEKIDPSDKRLQAIVLCPTRELAIQVSEEVRKLAKYLH 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+K +GG PI + + LK Q+++GTPGR++ + K L S +K ++DE D+M
Sbjct: 101 GVKTLPIYGGQPIDRQIKALK-GGVQVIIGTPGRVIDHINRKTLKPSTVKMVVMDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++ I S+P +Q +FSAT+ K I + +K+ +P+ + V +LT++
Sbjct: 160 LD-MGFREDIETILSSTPQERQTSLFSATMPKAILELTQKYQKEPVHIKV-VRKELTVNN 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y++ +++ K + L L+DV V+F + L + L + + A S+H +
Sbjct: 218 IKQFYIETRKSNKLEVLTRLIDVYNPKLTVVFTNTKKGADELVSDLQARGYGADSLHGDL 277
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R +F+ H + I A+D
Sbjct: 278 KQVQRDIVMDKFR--HGTIDILVATD 301
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V V NY++P+D + Y+HR+ R GR G +
Sbjct: 296 ILVATDVAARGIDVDDVECVINYELPQDEEYYVHRIGRTGRAGRDGI 342
>gi|94544241|gb|ABF34289.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10270]
Length = 539
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 151/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVEQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|189499774|ref|YP_001959244.1| DEAD/DEAH box helicase [Chlorobium phaeobacteroides BS1]
gi|189495215|gb|ACE03763.1| DEAD/DEAH box helicase domain protein [Chlorobium phaeobacteroides
BS1]
Length = 591
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/253 (33%), Positives = 147/253 (58%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA++G GKTA F L L ++ ++++ VLV+ TRELA Q+++ ++R++ M
Sbjct: 49 GSDVLGQAQTGTGKTAAFALPLLSTIDLSNASPQVLVLTPTRELALQVAEAFQRYAACME 108
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG L+ +VVGTPGR++ +R + LNL LK +LDE D+M
Sbjct: 109 DFHVLPIYGGQDYSGQLRRLR-RGVHVVVGTPGRVMDHIRRQTLNLDGLKTLVLDEADEM 167
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ I +P T+QV +FSAT+ EIR + +K++ D EV + ++ T+
Sbjct: 168 L-RMGFVDDVEWILEKTPATRQVALFSATMPSEIRRITRKYLRDFTEVAIKSKSS-TVES 225
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
Q ++ + + K L +L++ ++ V+IFV++ T+ + LS L + + + +++ M
Sbjct: 226 TTQRFLPVSGHHKLDALTRILEIEHYDGVIIFVRTKTQTVELSEKLRARGYASAALNGDM 285
Query: 389 TQEERLKKYQEFK 401
Q R K +FK
Sbjct: 286 MQNHREKTVGQFK 298
Score = 62.4 bits (150), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 36/46 (78%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ IL+AT++ RG+D+ER++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 301 VYNILIATDVAARGLDVERISHVINYDIPTDTESYVHRIGRTGRAG 346
>gi|15901428|ref|NP_346032.1| ATP-dependent RNA helicase [Streptococcus pneumoniae TIGR4]
gi|15903483|ref|NP_359033.1| ATP-dependent RNA helicase, [Streptococcus pneumoniae R6]
gi|111657434|ref|ZP_01408185.1| hypothetical protein SpneT_02001363 [Streptococcus pneumoniae
TIGR4]
gi|116516011|ref|YP_816872.1| ATP-dependent RNA helicase [Streptococcus pneumoniae D39]
gi|148988638|ref|ZP_01820071.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|148993389|ref|ZP_01822906.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|148997346|ref|ZP_01824951.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|149003176|ref|ZP_01828072.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|149007498|ref|ZP_01831133.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|168486852|ref|ZP_02711360.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|168488692|ref|ZP_02712891.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|168575216|ref|ZP_02721179.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|237650716|ref|ZP_04524968.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974]
gi|237821935|ref|ZP_04597780.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae CCRI
1974M2]
gi|303256042|ref|ZP_07342065.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|303260214|ref|ZP_07346186.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|303262605|ref|ZP_07348546.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|303265007|ref|ZP_07350922.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|303266470|ref|ZP_07352358.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|303269052|ref|ZP_07354834.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|307068227|ref|YP_003877193.1| superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|387626806|ref|YP_006062982.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV104]
gi|387759711|ref|YP_006066689.1| DEAD/DEAH box helicase [Streptococcus pneumoniae INV200]
gi|410476960|ref|YP_006743719.1| ATP-dependent RNA helicase [Streptococcus pneumoniae gamPNI0373]
gi|417679565|ref|ZP_12328961.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|417694475|ref|ZP_12343662.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|417696748|ref|ZP_12345926.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|417698980|ref|ZP_12348151.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|418076815|ref|ZP_12714048.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|418092190|ref|ZP_12729331.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|418096685|ref|ZP_12733796.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|418108014|ref|ZP_12745051.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|418110539|ref|ZP_12747560.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|418126249|ref|ZP_12763155.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|418130744|ref|ZP_12767627.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|418139918|ref|ZP_12776743.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|418144547|ref|ZP_12781342.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|418146842|ref|ZP_12783620.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|418148961|ref|ZP_12785723.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|418167190|ref|ZP_12803845.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|418169585|ref|ZP_12806227.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|418180949|ref|ZP_12817518.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|418185328|ref|ZP_12821869.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|418187578|ref|ZP_12824101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|418189826|ref|ZP_12826338.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|418192038|ref|ZP_12828540.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|418214793|ref|ZP_12841527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|418221614|ref|ZP_12848267.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|418230371|ref|ZP_12856970.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|418234799|ref|ZP_12861375.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|419423639|ref|ZP_13963852.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|419453945|ref|ZP_13993915.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|419458186|ref|ZP_13998128.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|419478235|ref|ZP_14018059.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|419484830|ref|ZP_14024605.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|419489360|ref|ZP_14029109.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|419504337|ref|ZP_14044005.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|419506481|ref|ZP_14046142.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|419508671|ref|ZP_14048323.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|419510850|ref|ZP_14050491.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|419515103|ref|ZP_14054728.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|419530527|ref|ZP_14070054.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|421211472|ref|ZP_15668454.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|421213518|ref|ZP_15670473.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|421215694|ref|ZP_15672615.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|421221131|ref|ZP_15677964.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|421222508|ref|ZP_15679299.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|421232303|ref|ZP_15688944.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|421234489|ref|ZP_15691107.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|421238220|ref|ZP_15694790.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|421243506|ref|ZP_15700021.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|421245438|ref|ZP_15701936.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|421247828|ref|ZP_15704309.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|421249814|ref|ZP_15706271.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|421266588|ref|ZP_15717468.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|421271008|ref|ZP_15721862.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|421273139|ref|ZP_15723980.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|421279376|ref|ZP_15730182.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|421294878|ref|ZP_15745599.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|421296428|ref|ZP_15747137.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|421301457|ref|ZP_15752127.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|421314475|ref|ZP_15765062.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|444382571|ref|ZP_21180772.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444386260|ref|ZP_21184321.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444387771|ref|ZP_21185787.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444389316|ref|ZP_21187233.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444391706|ref|ZP_21189516.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444394603|ref|ZP_21192154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444398902|ref|ZP_21196377.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444403416|ref|ZP_21200513.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444404127|ref|ZP_21201089.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444407649|ref|ZP_21204316.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444417903|ref|ZP_21213901.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444420547|ref|ZP_21216319.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
gi|61223743|sp|P0A4D7.1|EXP9_STRPN RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|61223744|sp|P0A4D8.1|EXP9_STRR6 RecName: Full=Probable ATP-dependent RNA helicase exp9; AltName:
Full=Exported protein 9
gi|14973078|gb|AAK75672.1| putative ATP-dependent RNA helicase [Streptococcus pneumoniae
TIGR4]
gi|15459096|gb|AAL00244.1| Conserved hypothetical protein [Streptococcus pneumoniae R6]
gi|116076587|gb|ABJ54307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae D39]
gi|147756401|gb|EDK63442.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP11-BS70]
gi|147758636|gb|EDK65633.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS69]
gi|147760857|gb|EDK67827.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP18-BS74]
gi|147925839|gb|EDK76914.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP6-BS73]
gi|147927944|gb|EDK78964.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP9-BS68]
gi|183570214|gb|EDT90742.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae CDC1087-00]
gi|183572869|gb|EDT93397.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae SP195]
gi|183578956|gb|EDT99484.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Streptococcus pneumoniae MLV-016]
gi|301794592|emb|CBW37036.1| DEAD box helicase family protein [Streptococcus pneumoniae INV104]
gi|301802300|emb|CBW35052.1| DEAD box helicase family protein [Streptococcus pneumoniae INV200]
gi|302597002|gb|EFL64125.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS455]
gi|302636322|gb|EFL66816.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP14-BS292]
gi|302638711|gb|EFL69174.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
SP-BS293]
gi|302641442|gb|EFL71807.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS458]
gi|302644048|gb|EFL74307.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS457]
gi|302645526|gb|EFL75758.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
BS397]
gi|306409764|gb|ADM85191.1| Superfamily II DNA and RNA helicase [Streptococcus pneumoniae
AP200]
gi|332072430|gb|EGI82913.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17570]
gi|332199626|gb|EGJ13701.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41317]
gi|332200146|gb|EGJ14219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47368]
gi|332201024|gb|EGJ15095.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47901]
gi|353746955|gb|EHD27613.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47502]
gi|353763545|gb|EHD44099.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44452]
gi|353768406|gb|EHD48930.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16531]
gi|353778291|gb|EHD58759.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41410]
gi|353781936|gb|EHD62376.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49447]
gi|353796189|gb|EHD76534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44511]
gi|353802068|gb|EHD82368.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA07643]
gi|353807013|gb|EHD87285.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13494]
gi|353811297|gb|EHD91539.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13856]
gi|353812417|gb|EHD92652.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13637]
gi|353829182|gb|EHE09316.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17971]
gi|353834176|gb|EHE14281.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19077]
gi|353843021|gb|EHE23066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA41688]
gi|353848612|gb|EHE28624.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47283]
gi|353849563|gb|EHE29568.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47360]
gi|353853553|gb|EHE33534.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47373]
gi|353855124|gb|EHE35094.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47388]
gi|353869523|gb|EHE49404.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA54644]
gi|353874924|gb|EHE54778.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47751]
gi|353885252|gb|EHE65041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP01]
gi|353886421|gb|EHE66203.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08780]
gi|353904697|gb|EHE80147.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13338]
gi|379529850|gb|EHY95091.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA02254]
gi|379565671|gb|EHZ30663.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18068]
gi|379573435|gb|EHZ38390.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40028]
gi|379581583|gb|EHZ46467.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43257]
gi|379586211|gb|EHZ51065.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA43264]
gi|379586902|gb|EHZ51752.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44386]
gi|379605725|gb|EHZ70475.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47760]
gi|379608395|gb|EHZ73141.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49194]
gi|379611116|gb|EHZ75844.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49542]
gi|379626015|gb|EHZ90641.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
EU-NP03]
gi|379631453|gb|EHZ96030.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
NP141]
gi|379635652|gb|EIA00211.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
England14-9]
gi|395572580|gb|EJG33175.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070035]
gi|395579272|gb|EJG39776.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070108]
gi|395579901|gb|EJG40396.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070109]
gi|395585395|gb|EJG45779.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070425]
gi|395588676|gb|EJG49004.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2070531]
gi|395594806|gb|EJG55041.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2080076]
gi|395600343|gb|EJG60500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2061617]
gi|395603569|gb|EJG63705.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2071247]
gi|395607005|gb|EJG67105.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081074]
gi|395607965|gb|EJG68061.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2081685]
gi|395613189|gb|EJG73219.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082170]
gi|395613508|gb|EJG73536.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
2082239]
gi|395866656|gb|EJG77784.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR27]
gi|395867222|gb|EJG78346.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR48]
gi|395874342|gb|EJG85428.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
SPAR55]
gi|395878869|gb|EJG89931.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17301]
gi|395893447|gb|EJH04434.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA56113]
gi|395895301|gb|EJH06276.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58581]
gi|395899017|gb|EJH09961.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA19998]
gi|395913160|gb|EJH24013.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA47562]
gi|406369905|gb|AFS43595.1| ATP-dependent RNA helicase, DEAD/DEAH box family [Streptococcus
pneumoniae gamPNI0373]
gi|444247988|gb|ELU54509.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8203]
gi|444251731|gb|ELU58199.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS125219]
gi|444251826|gb|ELU58293.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS8106]
gi|444257916|gb|ELU64249.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS70012]
gi|444259845|gb|ELU66154.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0002]
gi|444264468|gb|ELU70543.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0008]
gi|444264962|gb|ELU70998.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PCS81218]
gi|444269638|gb|ELU75442.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0007]
gi|444271245|gb|ELU76996.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0010]
gi|444277356|gb|ELU82867.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0009]
gi|444282368|gb|ELU87637.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0360]
gi|444284223|gb|ELU89379.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pneumoniae
PNI0427]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|424073184|ref|ZP_17810602.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. avellanae str. ISPaVe037]
gi|407996384|gb|EKG36857.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. avellanae str. ISPaVe037]
Length = 557
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRVDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|418194167|ref|ZP_12830656.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
gi|353857745|gb|EHE37707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47439]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|420143621|ref|ZP_14651118.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
gi|391856492|gb|EIT67032.1| ATP-dependent RNA helicase [Lactococcus garvieae IPLA 31405]
Length = 539
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L QA++G GKTA F L T++++ + + LV+ TRELA Q +E RF K
Sbjct: 35 ALSGRDVLGQAQTGTGKTAAFGLPTIEKINPENKAIQALVIAPTRELAVQGQEELFRFGK 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV FGG I+K + L++ IVVGTPGR++ L++ K L+LS L+ ILDE
Sbjct: 95 S-KGLKVRTVFGGSSIEKQIKALRS-GAHIVVGTPGRMVDLLKRKALDLSHLETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I +P +Q ++FSAT+ +I+ + KFM +P + V + ++T
Sbjct: 153 DEML-NMGFLEDIEFIIGKTPAERQTLLFSATMPNDIKKIGVKFMKNPEHIKVAAK-EMT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+++K KE EK L LLDV ++F ++ R ++ L + + A IH
Sbjct: 211 ADRIDQYFIKTKEFEKFDVLTRLLDVERPELAIVFGRTKRRVDEITRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK H L I A+D
Sbjct: 271 GDLDQNKRLRVLRDFKGGH--LDILVATD 297
Score = 55.1 bits (131), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDITQDQESYVHRIGRTGRAG 334
>gi|417938107|ref|ZP_12581405.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
gi|343391197|gb|EGV03772.1| DEAD/DEAH box helicase [Streptococcus infantis SK970]
Length = 525
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D+++I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEDIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|225861416|ref|YP_002742925.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298230290|ref|ZP_06963971.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19F]
gi|298255231|ref|ZP_06978817.1| cold-shock DEAD box protein A [Streptococcus pneumoniae str. Canada
MDR_19A]
gi|298503322|ref|YP_003725262.1| DEAD/DEAH box helicase [Streptococcus pneumoniae TCH8431/19A]
gi|387788640|ref|YP_006253708.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|417313062|ref|ZP_12099774.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|418083388|ref|ZP_12720585.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|418085577|ref|ZP_12722756.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|418094373|ref|ZP_12731500.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|418101042|ref|ZP_12738126.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|418119027|ref|ZP_12755984.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|418142096|ref|ZP_12778909.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|418151090|ref|ZP_12787836.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|418153319|ref|ZP_12790057.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|418164879|ref|ZP_12801548.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|418196212|ref|ZP_12832690.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|418198412|ref|ZP_12834871.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|418223785|ref|ZP_12850425.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|418228090|ref|ZP_12854707.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|419425531|ref|ZP_13965727.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|419427644|ref|ZP_13967825.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|419429784|ref|ZP_13969948.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|419436377|ref|ZP_13976465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|419438621|ref|ZP_13978689.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|419445096|ref|ZP_13985111.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|419447242|ref|ZP_13987247.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|419449374|ref|ZP_13989370.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|419502236|ref|ZP_14041920.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|419519298|ref|ZP_14058904.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|419527922|ref|ZP_14067465.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|421287857|ref|ZP_15738620.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|421290152|ref|ZP_15740902.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|421305543|ref|ZP_15756197.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
gi|225727400|gb|ACO23251.1| cold-shock DEAD box protein A [Streptococcus pneumoniae
Taiwan19F-14]
gi|298238917|gb|ADI70048.1| DEAD box ATP-dependent RNA helicase SrmB [Streptococcus pneumoniae
TCH8431/19A]
gi|327389770|gb|EGE88115.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA04375]
gi|353754608|gb|EHD35220.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA44288]
gi|353756286|gb|EHD36887.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47281]
gi|353764869|gb|EHD45417.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA49138]
gi|353771503|gb|EHD52012.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7286-06]
gi|353790979|gb|EHD71360.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA18523]
gi|353806347|gb|EHD86621.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13455]
gi|353814300|gb|EHD94526.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA14798]
gi|353816870|gb|EHD97078.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA16121]
gi|353829343|gb|EHE09476.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17371]
gi|353860830|gb|EHE40770.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47688]
gi|353862511|gb|EHE42443.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47778]
gi|353878583|gb|EHE58413.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5185-06]
gi|353880485|gb|EHE60300.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
3063-00]
gi|379138382|gb|AFC95173.1| cold-shock DEAD box protein A [Streptococcus pneumoniae ST556]
gi|379537028|gb|EHZ02213.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA13499]
gi|379549962|gb|EHZ15064.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11856]
gi|379566075|gb|EHZ31066.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA17719]
gi|379572789|gb|EHZ37746.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA19923]
gi|379600449|gb|EHZ65230.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47628]
gi|379613198|gb|EHZ77911.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
8190-05]
gi|379614782|gb|EHZ79492.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7879-04]
gi|379617837|gb|EHZ82517.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
5652-06]
gi|379618992|gb|EHZ83666.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
7533-05]
gi|379621992|gb|EHZ86628.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
4075-00]
gi|379641135|gb|EIA05673.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA08825]
gi|395886420|gb|EJG97436.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA58771]
gi|395887837|gb|EJG98851.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA54354]
gi|395904501|gb|EJH15415.1| ATP-dependent RNA helicase, putative [Streptococcus pneumoniae
GA62331]
Length = 524
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|260948446|ref|XP_002618520.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
gi|238848392|gb|EEQ37856.1| eukaryotic initiation factor 4A [Clavispora lusitaniae ATCC 42720]
Length = 396
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 156/321 (48%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKPEI+R I FG G Y+ P A R
Sbjct: 24 FDDLNLKPEIVRGI------------FGYG-----------YESPS---------AIQQR 51
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ ++ + L++ TRELA QI
Sbjct: 52 AILPITEGRDVLAQAQSGTGKTATFTISALQNIDVNEKATQALILAPTRELALQIQNVIS 111
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG + D E ++ QIVVGTPGR+ ++ + +K FI
Sbjct: 112 HIGLYL-NVTVHASIGGTSMSDDIEAFRS-GVQIVVGTPGRVSDMIERRYFKTHKVKMFI 169
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IF+ P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 170 LDEADEMLSS-GFKEQIYNIFKLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 228
Query: 322 AKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q+Y+ ++E E K L +L D + Q VIF + ++ L L NF
Sbjct: 229 -ELTLEGIKQYYINVEEEEYKFDCLCDLYDSISVTQAVIFCNTRSKVENLMAKLKANNFT 287
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER EF+
Sbjct: 288 VSAIHADLPQAERDTIMNEFR 308
Score = 47.8 bits (112), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%), Gaps = 9/60 (15%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR---------AGRFGTKAVLGM 150
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+ R A F TK +GM
Sbjct: 313 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTKLDVGM 372
>gi|227528896|ref|ZP_03958945.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
gi|227351170|gb|EEJ41461.1| DEAD box ATP-dependent RNA helicase SrmB [Lactobacillus vaginalis
ATCC 49540]
Length = 501
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 152/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ +++ TRELA Q +E R K
Sbjct: 38 GQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQAIIISPTRELAIQTQEELFRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V V +GG I++ LK H PQI+VGTPGR+ + + L +K +LDE D+M
Sbjct: 97 HVRVQVVYGGADIRRQIRNLKQH-PQILVGTPGRLRDHLNRHTVKLDHIKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I +P +Q ++FSAT+ EI+ + KFM DP V + + +LT
Sbjct: 156 L-NMGFLDDIEAIIDQTPADRQTLLFSATMPPEIKKIGVKFMTDPTMVRIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YVK ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVKARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSRGLVARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
+Q+ R K ++FK H L I A+D
Sbjct: 274 SQDRRTKIMKKFK--HGELDILVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 338
>gi|212558739|gb|ACJ31193.1| Helicase:DbpA, RNA-binding:DEAD/DEAH box helicase [Shewanella
piezotolerans WP3]
Length = 611
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 151/266 (56%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ ++ +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNSIDPNTNSPQILVLAPTRELAVQVAEAFGSYAKFMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG + + L+ PQI+VGTPGR++ +R L L LK +LDE D+M
Sbjct: 103 GLHVLPIYGGQSMHQQLNALR-RGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V K++ +P+ V + T+
Sbjct: 162 L-KMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLSEPVHVKI-AATTTTVET 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V + ++IFV++ C+ L+ L + + + +H M
Sbjct: 220 IEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 280 NQQARERAVDQLK--RGKLDIIIATD 303
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I++AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 298 IIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGR---TGMAIL 347
>gi|333397027|ref|ZP_08478840.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum KCTC 3527]
gi|406600414|ref|YP_006745760.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum JB7]
gi|406371949|gb|AFS40874.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gelidum JB7]
Length = 542
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILEHIDLDNKNIQALIVSPTRELAIQTAEELKKLG-HDK 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLEDIESIIKNTPAERQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R L+ L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/88 (35%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 64 LAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIERVNI 119
LA+ E +G H+SG L + R + ILVAT++ RG+D++ V+
Sbjct: 255 LARGLEARG----YHASGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSH 310
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAV 147
V+N+D+P+D ++Y+HR+ R GR G + V
Sbjct: 311 VYNFDIPQDPESYVHRIGRTGRAGAEGV 338
>gi|330808371|ref|YP_004352833.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|423696160|ref|ZP_17670650.1| cold-shock DEAD box protein A [Pseudomonas fluorescens Q8r1-96]
gi|327376479|gb|AEA67829.1| cold-shock dead-box protein A [Pseudomonas brassicacearum subsp.
brassicacearum NFM421]
gi|388004280|gb|EIK65607.1| cold-shock DEAD box protein A [Pseudomonas fluorescens Q8r1-96]
Length = 557
Score = 155 bits (392), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|418963292|ref|ZP_13515131.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
gi|383343407|gb|EID21591.1| DEAD/DEAH box helicase [Streptococcus anginosus subsp. whileyi CCUG
39159]
Length = 565
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + V LV+ TRELA Q +E RF +
Sbjct: 82 AMAGKDVIGQAQTGTGKTAAFGFPTLEKINTENPVVQALVIAPTRELAVQSQEELFRFGR 141
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 142 -SKGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 199
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 200 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKQIGVKFMKEPTHVKIAAK-ELT 257
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 258 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 317
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 318 GDLDQGKRLRVLRDFKNGN--LDVLVATD 344
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 339 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 395
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + T E AFQ K+
Sbjct: 396 G--------YLQIIESLTKKRMKGMKPATAEEAFQAKKK 426
>gi|378949637|ref|YP_005207125.1| cold-shock DEAD-box protein A [Pseudomonas fluorescens F113]
gi|359759651|gb|AEV61730.1| Cold-shock DEAD-box protein A [Pseudomonas fluorescens F113]
Length = 557
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|429319791|emb|CCP33100.1| DEAD box helicase family protein [Streptococcus pneumoniae
SPN034183]
Length = 524
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 92/265 (34%), Positives = 153/265 (57%), Gaps = 4/265 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
+ Q +RL+ ++FK+ + + +T
Sbjct: 271 GDLDQNKRLRVLRDFKNGNLDVLVT 295
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LV T++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVTTDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|408674498|ref|YP_006874246.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
gi|387856122|gb|AFK04219.1| DEAD/DEAH box helicase domain protein [Emticicia oligotrophica DSM
17448]
Length = 576
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 87/260 (33%), Positives = 149/260 (57%), Gaps = 4/260 (1%)
Query: 143 GTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G AVL G D++ QA++G GKTA F + ++ ++ D N VLVMC TRELA Q+ ++ +
Sbjct: 34 GIPAVLRGGDVIGQAQTGTGKTAAFGIPAIEAVDVEDKNTQVLVMCPTRELALQVKEQIQ 93
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
+ +KY + V +GG ++ LK QIVVGTPGRI+ + K L+LS +K I
Sbjct: 94 KLAKYKKGLHVAAIYGGESYERQFLALK-KGVQIVVGTPGRIMDHIDRKTLSLSSIKMAI 152
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + R D+++I +P +Q ++FSAT+S EI + K+F DP EV +
Sbjct: 153 LDEADEML-NMGFREDIEKILSYAPDERQTVLFSATMSPEILSIAKRFQKDP-EVIRTVK 210
Query: 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++ ++Q + ++ K + + L+DV +++F + ++ + + L + + A
Sbjct: 211 TEISNANIEQFFFPVRREAKMEVMTRLIDVNNLKLMLVFANTKSKVDEIVSELQIRGYAA 270
Query: 382 VSIHRGMTQEERLKKYQEFK 401
+H M Q+ R + +F+
Sbjct: 271 EGLHGDMRQQVRTQVMNKFR 290
Score = 58.9 bits (141), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 44/73 (60%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+D+ V+ VFNYD+P+D + Y+HR+ R GR G M I + KS +
Sbjct: 296 ILVATDVAARGIDVSGVDAVFNYDVPQDLEYYVHRIGRTGRAGKTGKAFMFISGREKSRL 355
Query: 161 GKTAVFVLATLQQ 173
+ + ++Q
Sbjct: 356 REIEYYTKVKIEQ 368
>gi|377831050|ref|ZP_09814038.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
gi|377555147|gb|EHT16838.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus mucosae
LM1]
Length = 495
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 91/266 (34%), Positives = 152/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + + L++ TRELA Q +E R K
Sbjct: 31 GDDVIGQAQTGTGKTAAFGLPILEHIDPQNPAIQALIISPTRELAIQTQEELYRLGKD-K 89
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV V +GG I++ + LK H P+I+VGTPGR+ +R ++LS + +LDE D+M
Sbjct: 90 RAKVQVVYGGADIRRQIKSLK-HQPEILVGTPGRLRDHIRRHTVDLSQINTLVLDEADEM 148
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I +P T+Q ++FSAT+ EI+ + +FM +P V + + +LT
Sbjct: 149 L-NMGFLEDIEAIINETPATRQTLLFSATMPPEIKRIGMQFMKEPKTVRIQAQ-ELTTDL 206
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L+ + + A IH +
Sbjct: 207 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLTARGYNAAGIHGDL 266
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K + FK+ L I A+D
Sbjct: 267 TQDRRTKIMKRFKEGK--LDILVATD 290
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 285 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 331
>gi|398965638|ref|ZP_10681111.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
gi|398146899|gb|EJM35624.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM30]
Length = 557
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|300173740|ref|YP_003772906.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
gi|333446960|ref|ZP_08481902.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc inhae KCTC 3774]
gi|299888119|emb|CBL92087.1| ATP-dependent RNA helicase/Autoaggregation-mediating protein
[Leuconostoc gasicomitatum LMG 18811]
Length = 538
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 150/254 (59%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILEHIDLDNKNIQALIVSPTRELAIQTAEELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIEHVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLEDIESIIKNTPAERQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R L+ L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELARGLEARGYHASGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/88 (36%), Positives = 51/88 (57%), Gaps = 8/88 (9%)
Query: 64 LAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC----WRILVATNLFGRGMDIERVNI 119
LA+ E +G H+SG L + R + ILVAT++ RG+D++ V+
Sbjct: 255 LARGLEARG----YHASGLHGDLTQQMRSRVLAQFKSHEINILVATDVAARGLDVKDVSH 310
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAV 147
V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 311 VYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|417935461|ref|ZP_12578778.1| DEAD/DEAH box helicase [Streptococcus infantis X]
gi|343402370|gb|EGV14875.1| DEAD/DEAH box helicase [Streptococcus infantis X]
Length = 524
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|319938761|ref|ZP_08013125.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
gi|319811811|gb|EFW08077.1| superfamily II DNA and RNA helicase [Streptococcus anginosus
1_2_62CV]
Length = 565
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + V LV+ TRELA Q +E RF +
Sbjct: 82 AMAGKDVIGQAQTGTGKTAAFGFPTLEKINTENPIVQALVIAPTRELAVQSQEELFRFGR 141
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 142 -SKGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 199
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 200 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGMKFMKEPTHVKIAAK-ELT 257
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 258 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 317
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 318 GDLDQGKRLRVLRDFKNGN--LDVLVATD 344
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 339 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 395
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 396 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKK 426
>gi|422412306|ref|ZP_16489265.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
gi|313619814|gb|EFR91407.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
S4-378]
Length = 518
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ ++NV L++ TRELA Q+S+E + S
Sbjct: 38 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQALIIAPTRELAIQVSEELYKLS- 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 97 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 156 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 213
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 214 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 273
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 274 GDLTQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|195434729|ref|XP_002065355.1| GK14711 [Drosophila willistoni]
gi|194161440|gb|EDW76341.1| GK14711 [Drosophila willistoni]
Length = 425
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
V G D++ QA+SG GKTA F +A LQQ++TT L++ TRELA QI + +
Sbjct: 86 CVKGRDVIAQAQSGTGKTATFSIAILQQIDTTSRECQALILAPTRELATQIQRVVMALGE 145
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM + GG +++D L++ +VVGTPGR+ ++ K L +K F+LDE
Sbjct: 146 YM-KVHSHACIGGTNVREDARILES-GCHVVVGTPGRVYDMINRKVLRTQSIKLFVLDEA 203
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + +Q++F+ P QV++ SAT+ ++ V + FM +P+ + V E +LT
Sbjct: 204 DEMLSR-GFKDQIQDVFKMLPPDVQVILLSATMPHDVLEVSRCFMREPVSILVKKE-ELT 261
Query: 326 LHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV +K EN K L +L D L Q VIF + + L+ +S NF ++
Sbjct: 262 LEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSNHNFTVSAM 321
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q +R ++F+ + IT
Sbjct: 322 HGDMEQRDREVIMKQFRSGSSRVLIT 347
Score = 46.2 bits (108), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 343 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 380
>gi|407718741|ref|YP_006796146.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
gi|407242497|gb|AFT82147.1| ATP-dependent RNA helicase [Leuconostoc carnosum JB16]
Length = 532
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 149/254 (58%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GRDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTAEELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 RVDVQVVFGGSDIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLEDIESIIKNTPADRQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R L+ L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLSQFK 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|312868913|ref|ZP_07729097.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
gi|311095562|gb|EFQ53822.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris
PB013-T2-3]
Length = 498
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 156/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ L++ TRELA Q +E R K
Sbjct: 38 GQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPTRELAIQTQEELYRLGK-DK 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V V +GG I++ + LK H+PQI+VGTPGR+ + + L ++ +LDE D+M
Sbjct: 97 HVRVQVVYGGADIRRQIKSLK-HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + ++FM +P V + + +LT
Sbjct: 156 L-NMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTNPETVRIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K ++FK+ L I A+D
Sbjct: 274 TQDRRTKIMKKFKN--GDLDILVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAG 334
>gi|398864426|ref|ZP_10619961.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
gi|398245234|gb|EJN30760.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM78]
Length = 557
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|398920634|ref|ZP_10659422.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
gi|398167666|gb|EJM55714.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM49]
Length = 557
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|422415356|ref|ZP_16492313.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
gi|313624489|gb|EFR94491.1| dead-box ATP-dependent rna helicase ydbr [Listeria innocua FSL
J1-023]
Length = 516
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 149/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ ++NV L++ TRELA Q+S+E + S
Sbjct: 36 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKNNNVQALIIAPTRELAIQVSEELYKLS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 95 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDNVETLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 154 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 212 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|398861921|ref|ZP_10617535.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
gi|398902136|ref|ZP_10650824.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398993677|ref|ZP_10696618.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398134341|gb|EJM23507.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM21]
gi|398178983|gb|EJM66612.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM50]
gi|398231535|gb|EJN17522.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM79]
Length = 557
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|448078991|ref|XP_004194293.1| Piso0_004780 [Millerozyma farinosa CBS 7064]
gi|359375715|emb|CCE86297.1| Piso0_004780 [Millerozyma farinosa CBS 7064]
Length = 396
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 105/321 (32%), Positives = 159/321 (49%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 24 FDDLNLKPNIVRGI------------FGYG-----------YESPS---------AIQQR 51
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 52 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVIT 111
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG ++ D E K+ QIVVGTPGR+ ++ + +K FI
Sbjct: 112 HIGLYL-NVTVHASIGGTSMKDDIEAFKS-GVQIVVGTPGRVFDMIERRFFRTDKVKMFI 169
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 170 LDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 228
Query: 322 AKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q ++ + +E+ K L +L D + Q VIF + + L+T L +NF
Sbjct: 229 -ELTLEGIKQFFINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRAKVEYLTTRLKAENFT 287
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER EF+
Sbjct: 288 VSAIHADLPQGERDTIMNEFR 308
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 313 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 350
>gi|386362972|ref|YP_006072303.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
gi|350277381|gb|AEQ24749.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus pyogenes
Alab49]
Length = 539
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|322514213|ref|ZP_08067275.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
gi|322119906|gb|EFX91915.1| superfamily II helicase [Actinobacillus ureae ATCC 25976]
Length = 607
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ T + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPTQHHPQMLVMAPTRELAIQVADACEQFTKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V +GG LK Q+VVGTPGRIL +R L+LS L+ +LDE D+M
Sbjct: 103 GVRVVTVYGGQRYDIQLRALK-QGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + ++FM DP EV + + +
Sbjct: 162 L-RMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMKDPQEVKIQATQR-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN L L+V EF+ +IF ++ T I ++ L + A +++ M
Sbjct: 220 ITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R + + K L I A+D
Sbjct: 280 TQQAREQTLAKLKSGR--LDILVATD 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DIER+++V N+D+P D+++Y+HR+ R GR G
Sbjct: 298 ILVATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAG 340
>gi|290580897|ref|YP_003485289.1| ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449971807|ref|ZP_21814550.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|450060032|ref|ZP_21843592.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|450067851|ref|ZP_21846836.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|450093968|ref|ZP_21856845.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|450150739|ref|ZP_21876730.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|450166956|ref|ZP_21882509.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
gi|254997796|dbj|BAH88397.1| putative ATP-dependent RNA helicase [Streptococcus mutans NN2025]
gi|449171557|gb|EMB74214.1| putative ATP-dependent RNA helicase [Streptococcus mutans 2VS1]
gi|449202498|gb|EMC03410.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML4]
gi|449207793|gb|EMC08456.1| putative ATP-dependent RNA helicase [Streptococcus mutans NLML9]
gi|449216747|gb|EMC16840.1| putative ATP-dependent RNA helicase [Streptococcus mutans W6]
gi|449233184|gb|EMC32266.1| putative ATP-dependent RNA helicase [Streptococcus mutans 14D]
gi|449239040|gb|EMC37773.1| putative ATP-dependent RNA helicase [Streptococcus mutans B]
Length = 517
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 97/269 (36%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++ ++ V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDVINNVVQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 E-KKVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T+Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPETRQTLLFSATMPDAIKRIGVKFMKEPEHVKIVAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 TDLVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKN--DNLDILVATD 297
Score = 62.0 bits (149), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/103 (36%), Positives = 53/103 (51%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKH---GQSITFVA 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG LQ +E + T + AFQ SK+
Sbjct: 345 PNEMG--------YLQIIEKLTKKRMKGMKPATAQEAFQASKK 379
>gi|416017848|ref|ZP_11564885.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. B076]
gi|416028529|ref|ZP_11571474.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|422404296|ref|ZP_16481350.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|320323321|gb|EFW79409.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. B076]
gi|320327518|gb|EFW83530.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. race 4]
gi|330876701|gb|EGH10850.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
glycinea str. race 4]
Length = 559
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|306827075|ref|ZP_07460372.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
gi|304430709|gb|EFM33721.1| ATP-dependent RNA helicase DeaD [Streptococcus pyogenes ATCC 10782]
Length = 539
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|251782861|ref|YP_002997164.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|410495268|ref|YP_006905114.1| ATP-dependent RNA helicase DeaD [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|242391491|dbj|BAH81950.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis GGS_124]
gi|410440428|emb|CCI63056.1| K05592 ATP-dependent RNA helicase DeaD [Streptococcus dysgalactiae
subsp. equisimilis AC-2713]
Length = 539
Score = 155 bits (391), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|70731602|ref|YP_261343.1| cold-shock DEAD box protein A [Pseudomonas protegens Pf-5]
gi|68345901|gb|AAY93507.1| cold-shock DEAD box protein A [Pseudomonas protegens Pf-5]
Length = 557
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|398871550|ref|ZP_10626864.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|398889966|ref|ZP_10643708.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398924907|ref|ZP_10661514.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398952042|ref|ZP_10674504.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|426408349|ref|YP_007028448.1| ATP-dependent RNA helicase DeaD [Pseudomonas sp. UW4]
gi|398155539|gb|EJM43978.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM33]
gi|398172788|gb|EJM60643.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM48]
gi|398188885|gb|EJM76176.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM55]
gi|398206106|gb|EJM92879.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM74]
gi|426266566|gb|AFY18643.1| ATP-dependent RNA helicase DeaD [Pseudomonas sp. UW4]
Length = 557
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|398840034|ref|ZP_10597273.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
gi|398111365|gb|EJM01251.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM102]
Length = 557
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|388545836|ref|ZP_10149115.1| cold-shock DEAD box protein A [Pseudomonas sp. M47T1]
gi|388275953|gb|EIK95536.1| cold-shock DEAD box protein A [Pseudomonas sp. M47T1]
Length = 557
Score = 155 bits (391), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILNRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P ++Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPESRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V EF+ ++ FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLRLLEVEEFDALIAFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|410092347|ref|ZP_11288875.1| helicase [Pseudomonas viridiflava UASWS0038]
gi|409760286|gb|EKN45442.1| helicase [Pseudomonas viridiflava UASWS0038]
Length = 556
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|386317378|ref|YP_006013542.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|408401996|ref|YP_006859960.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
gi|417927169|ref|ZP_12570557.1| DEAD/DEAH box helicase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|323127665|gb|ADX24962.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. equisimilis ATCC 12394]
gi|340765043|gb|EGR87569.1| DEAD/DEAH box helicase [Streptococcus dysgalactiae subsp.
equisimilis SK1250]
gi|407968225|dbj|BAM61463.1| ATP-dependent RNA helicase [Streptococcus dysgalactiae subsp.
equisimilis RE378]
Length = 539
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|417885327|ref|ZP_12529482.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
gi|341595982|gb|EGS38619.1| DEAD-box ATP-dependent RNA helicase CshA [Lactobacillus oris F0423]
Length = 498
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/266 (33%), Positives = 155/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ L++ TRELA Q +E R K
Sbjct: 38 GQDVIGQAQTGTGKTAAFGLPIIEHVDTDNPNIQALIISPTRELAIQTQEELYRLGK-DK 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V V +GG I++ + LK H+PQI+VGTPGR+ + + L ++ +LDE D+M
Sbjct: 97 RVRVQVVYGGADIRRQIKSLK-HHPQILVGTPGRLRDHINRHTVKLGHIQTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + ++FM +P V + + +LT
Sbjct: 156 L-NMGFLEDIEAIIKETPAERQTLLFSATMPPEIKRIGEQFMTNPETVRIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R K ++FK+ L I A+D
Sbjct: 274 TQDRRTKIMKKFKN--GDLDILVATD 297
Score = 60.1 bits (144), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAG 334
>gi|229165218|ref|ZP_04293010.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
gi|228618250|gb|EEK75283.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH621]
Length = 519
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 17 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKIGK 76
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 77 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 134
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 135 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 192
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 193 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 252
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 253 GDLTQAKRMSVLRKFKE 269
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 274 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 320
>gi|407692430|ref|YP_006817219.1| cold-shock DEAD box protein A-like protein [Actinobacillus suis
H91-0380]
gi|407388487|gb|AFU18980.1| cold-shock DEAD box protein A-like protein [Actinobacillus suis
H91-0380]
Length = 619
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 143/266 (53%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLAQIDPAQRHPQMLVMAPTRELAIQVADACEQFTKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V +GG LK Q+VVGTPGRIL +R L+LS L+ +LDE D+M
Sbjct: 103 GVRVVTVYGGQRYDIQLRALK-QGSQVVVGTPGRILDHIRRGTLDLSALQSIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + ++FM DP EV + + +
Sbjct: 162 L-RMGFIDDVETVMAELPENHQTALFSATMPEPIRRITRRFMKDPQEVKI-QATQRSAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN L L+V EF+ +IF ++ T I ++ L + A +++ M
Sbjct: 220 ITQSYWLVNGFRKNDALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRAAALNGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R + ++ K L I A+D
Sbjct: 280 TQQAREQTLEKLKSGR--LDILVATD 303
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+DIER+++V N+D+P D+++Y+HR+ R GR G
Sbjct: 298 ILVATDVAARGIDIERISLVVNFDIPLDAESYVHRIGRTGRAG 340
>gi|423515083|ref|ZP_17491564.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
gi|401168046|gb|EJQ75314.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-4]
Length = 540
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKDAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 290 AIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|423370478|ref|ZP_17347885.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
gi|401073949|gb|EJP82358.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD142]
Length = 542
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKDAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 290 AIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|422808949|ref|ZP_16857360.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
gi|378752563|gb|EHY63148.1| Cold-shock DEAD-box protein A [Listeria monocytogenes FSL J1-208]
Length = 516
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 36 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 95 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 154 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 212 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|163938237|ref|YP_001643121.1| DEAD/DEAH box helicase [Bacillus weihenstephanensis KBAB4]
gi|229131241|ref|ZP_04260147.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|423514499|ref|ZP_17491006.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
gi|163860434|gb|ABY41493.1| DEAD/DEAH box helicase domain protein [Bacillus weihenstephanensis
KBAB4]
gi|228652232|gb|EEL08163.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus
BDRD-ST196]
gi|402442074|gb|EJV74016.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA2-1]
Length = 538
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKDAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 290 AIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|422682884|ref|ZP_16741147.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|331012221|gb|EGH92277.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
Length = 559
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|124485198|ref|YP_001029814.1| hypothetical protein Mlab_0371 [Methanocorpusculum labreanum Z]
gi|124362739|gb|ABN06547.1| DEAD/DEAH box helicase domain protein [Methanocorpusculum labreanum
Z]
Length = 656
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 81/253 (32%), Positives = 146/253 (57%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+ QA++G GKTA F + +++L+ + NV LV+ TRELA Q ++E+ R KY
Sbjct: 42 GKDVTGQAQTGTGKTAAFGIPIIERLDPDNKNVQALVLSPTRELAIQTAEEFSRLMKYKK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG PI++ LK Q+V+GTPGR++ ++ L+L + FILDE D+M
Sbjct: 102 GLNVVPIYGGQPIERQLRALK-GTVQVVIGTPGRVIDHIKRGTLHLDSVTMFILDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D+++IFR +P +Q ++FSAT+ + I + ++F DP V + +LT+
Sbjct: 161 LD-MGFREDIEDIFRDTPKDRQTILFSATMPQPILDITRRFQRDPQFVKI-TRKELTVPQ 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y++++E +K + L LD+ ++F + L + + + + ++H M
Sbjct: 219 IEQTYIEVRERDKLEALCRTLDMNNPELALVFCNTKRTVDDLMSRMQARGYFVEALHGDM 278
Query: 389 TQEERLKKYQEFK 401
Q++R + F+
Sbjct: 279 KQQQRDRVMARFR 291
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/46 (52%), Positives = 37/46 (80%), Gaps = 3/46 (6%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFG 143
+L+AT++ RG+D++ V+IVFNYD+P+D + Y+HR+ ARAGR G
Sbjct: 297 VLIATDVAARGIDVDDVDIVFNYDVPQDVEYYVHRIGRTARAGRTG 342
>gi|389681290|ref|ZP_10172635.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis O6]
gi|399010186|ref|ZP_10712563.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
gi|388554826|gb|EIM18074.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis O6]
gi|398107740|gb|EJL97734.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM17]
Length = 557
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|335030730|ref|ZP_08524212.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
gi|333771191|gb|EGL48148.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus anginosus
SK52 = DSM 20563]
Length = 565
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + V LV+ TRELA Q +E RF +
Sbjct: 82 AMAGKDVIGQAQTGTGKTAAFGFPTLEKINTENPIVQALVIAPTRELAVQSQEELFRFGR 141
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 142 -SKGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 199
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 200 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPTHVKIAAK-ELT 257
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 258 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 317
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 318 GDLDQGKRLRVLRDFKNGN--LDVLVATD 344
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 339 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 395
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + T E AFQ K+
Sbjct: 396 G--------YLQIIESLTKKRMKGMKPATAEEAFQAKKK 426
>gi|309798558|ref|ZP_07692833.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
gi|308117794|gb|EFO55195.1| ATP-dependent rna helicase, dead/deah box family [Streptococcus
infantis SK1302]
Length = 525
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|257482687|ref|ZP_05636728.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
tabaci str. ATCC 11528]
gi|289626949|ref|ZP_06459903.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
aesculi str. NCPPB 3681]
gi|289649408|ref|ZP_06480751.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
aesculi str. 2250]
gi|422581277|ref|ZP_16656420.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|422596335|ref|ZP_16670617.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
lachrymans str. M301315]
gi|422605656|ref|ZP_16677669.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
str. 301020]
gi|330866127|gb|EGH00836.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
aesculi str. 0893_23]
gi|330889311|gb|EGH21972.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv. mori
str. 301020]
gi|330986634|gb|EGH84737.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
lachrymans str. M301315]
Length = 559
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|425900700|ref|ZP_18877291.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
gi|397883897|gb|EJL00384.1| cold-shock DEAD box protein A [Pseudomonas chlororaphis subsp.
aureofaciens 30-84]
Length = 557
Score = 154 bits (390), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|406659253|ref|ZP_11067391.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
iniae 9117]
gi|405577362|gb|EKB51510.1| DEAD/DEAH box family ATP-dependent RNA helicase [Streptococcus
iniae 9117]
Length = 543
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 148/256 (57%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T D+ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTDDNIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIDKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLEHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVEQFYVRVKEQEKFDTMTRLMDVQQPELAIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFK 401
+ Q +RL+ ++FK
Sbjct: 271 GDLDQNKRLRVIRDFK 286
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGK---TGESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195
+ MG L +ET + + T E AFQ
Sbjct: 345 PNEMG--------YLSMIETLTKKQMLPLKPATAEEAFQ 375
>gi|353230587|emb|CCD77004.1| putative dead box ATP-dependent RNA helicase [Schistosoma mansoni]
Length = 342
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 96/249 (38%), Positives = 142/249 (57%), Gaps = 5/249 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
++ G +++ QA+SG GKTA F +A LQQ+ T D LV+ TRELA QI
Sbjct: 50 SIEGRNVIAQAQSGTGKTATFSIAILQQICTNDPRCQALVLAPTRELAKQIQMVVLALGD 109
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM NI V GG + D E L+ QIVVGTPGR+L ++ L+ +K F+LDE
Sbjct: 110 YM-NISCHVCIGGTQVSTDIEQLQL-GQQIVVGTPGRVLDMISRGYLHTQTIKCFVLDEA 167
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML L + +QEIFRS + Q+++ SAT+ E+ + K FM +P+ + + E +LT
Sbjct: 168 DEMLS-LGFKDQIQEIFRSLNSSVQIILLSATIPNEVLEISKHFMRNPVRILLKQE-ELT 225
Query: 326 LHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV +++ E K + L +L + Q VIF S + L+ L E++F ++
Sbjct: 226 LDGIRQFYVNVEQEEWKLETLCDLYQTITITQAVIFCNSRRKVEWLTNELIERDFIVSAM 285
Query: 385 HRGMTQEER 393
H M Q ER
Sbjct: 286 HGEMEQIER 294
Score = 48.1 bits (113), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 31/36 (86%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
RIL++T+L RG+D++++++V N+D+P + ++Y+HR
Sbjct: 307 RILISTDLLSRGIDVQQISLVINFDLPTNLESYIHR 342
>gi|15675334|ref|NP_269508.1| ATP-dependent RNA helicase [Streptococcus pyogenes SF370]
gi|19746376|ref|NP_607512.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS8232]
gi|71903810|ref|YP_280613.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71910967|ref|YP_282517.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94988830|ref|YP_596931.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94994657|ref|YP_602755.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|410680821|ref|YP_006933223.1| DEAD/DEAH box helicase [Streptococcus pyogenes A20]
gi|417856607|ref|ZP_12501666.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|421892934|ref|ZP_16323529.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|13622515|gb|AAK34229.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes M1 GAS]
gi|19748574|gb|AAL98011.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS8232]
gi|71802905|gb|AAX72258.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS6180]
gi|71853749|gb|AAZ51772.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS5005]
gi|94542338|gb|ABF32387.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS9429]
gi|94548165|gb|ABF38211.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10750]
gi|379981303|emb|CCG27251.1| Cold-shock DEAD-box protein A [Streptococcus pyogenes NS88.2]
gi|387933562|gb|EIK41675.1| ATP-dependent RNA helicase [Streptococcus pyogenes HKU
QMH11M0907901]
gi|395454207|dbj|BAM30546.1| ATP-dependent RNA helicase [Streptococcus pyogenes M1 476]
gi|409693410|gb|AFV38270.1| DEAD/DEAH box helicase family protein [Streptococcus pyogenes A20]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|21910615|ref|NP_664883.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS315]
gi|28895696|ref|NP_802046.1| ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
gi|21904817|gb|AAM79686.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes
MGAS315]
gi|28810945|dbj|BAC63879.1| putative ATP-dependent RNA helicase [Streptococcus pyogenes SSI-1]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|422759291|ref|ZP_16813053.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
gi|322412126|gb|EFY03034.1| putative ATP-dependent RNA helicase [Streptococcus dysgalactiae
subsp. dysgalactiae ATCC 27957]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 55/104 (52%), Gaps = 13/104 (12%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMC-HTRELAFQISKE 199
+ MG ++ T +Q++ +C T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP---------LCPATAEEAFQAKKK 379
>gi|452825346|gb|EME32343.1| ATP-dependent RNA helicase DEAD [Galdieria sulphuraria]
Length = 412
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 88/256 (34%), Positives = 146/256 (57%), Gaps = 4/256 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D + QA+SGMGKTA FV+ LQ ++T+ V L++ TRELA QI + +
Sbjct: 73 VKGRDTIAQAQSGMGKTATFVVGILQNVDTSFQKVQALILAPTRELAQQIQRVVNELGDF 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
MS ++ GG + D + + P +VVGTPGR+ ++ K +K F+LDE D
Sbjct: 133 MS-VRCHACIGGTRVMDDIRTFQENVPHVVVGTPGRVFDMMNRKVFETKYIKSFVLDEAD 191
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + ++F+ P QV +FSAT+ +++ + +KFM DP+ + V E +LTL
Sbjct: 192 EMLSR-GFKEQIYDVFQYMPANCQVGLFSATMPQDVLEMTEKFMRDPIVILVKKE-ELTL 249
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q+Y+ + KE K + L +L + L Q +I+V + + L+ L E++F +H
Sbjct: 250 EGIKQYYIAVEKEEYKFETLCDLYETLTVTQAIIYVNTRRKVDWLTQKLRERDFTVSCLH 309
Query: 386 RGMTQEERLKKYQEFK 401
+ Q+ER +EF+
Sbjct: 310 GDIDQKERDLIMREFR 325
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+LV T+L RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 330 RVLVTTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGV 377
>gi|68248840|ref|YP_247952.1| cold-shock DEAD-box protein A-like protein [Haemophilus influenzae
86-028NP]
gi|68057039|gb|AAX87292.1| Cold-shock DEAD-box protein A homolog [Haemophilus influenzae
86-028NP]
Length = 613
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 149/275 (54%), Gaps = 23/275 (8%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ ++ + +LVM TRELA Q++ E+F KY
Sbjct: 42 GNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACEQFVKYAH 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ +GG LK Q+VVGTPGRIL +R + LNLS L+ +LDE D+M
Sbjct: 102 GTRIVTLYGGQRYDIQLRALK-QGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD--------- 319
L ++ DV+ + P Q +FSAT+ + IR + K+FM+DP EV +
Sbjct: 161 L-RMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDI 219
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D++ +HG++ KN+ L L+V +F+ +IF ++ T + ++ LL + F
Sbjct: 220 DQSCWYVHGVR----------KNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGF 269
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ +++ MTQ+ R + ++ L I A+D
Sbjct: 270 RSAALNGDMTQQLREQTLDRLRN--GSLDIVVATD 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
I+VAT++ RG+DIER+++V NYD+P D+++Y+HR+ R GR G + + + + +
Sbjct: 297 IVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLL 356
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
+ + ++E N VL C ++ +I+K+ E
Sbjct: 357 RNIEHLMKKGINEVEL--PNHLVLQECRRKKFVAKITKQLE 395
>gi|357236526|ref|ZP_09123869.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
gi|356884508|gb|EHI74708.1| hypothetical protein STRCR_2065 [Streptococcus criceti HS-6]
Length = 519
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 157/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIDTANNVIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ + L L+ ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRRALKLNTVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P+ +Q ++FSAT+ I+ + KFM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISHVPNERQTLLFSATMPDAIKRIGVKFMKDPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q YV++KE EK + L+DV + ++F ++ R L+ L + + A IH
Sbjct: 211 SDMVEQFYVRVKEREKFDTMTRLIDVEQPELSIVFGRTKRRVDELTRGLKLRGYRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK + L I A+D
Sbjct: 271 GDLDQNKRLRVIRDFK--NDNLDILVATD 297
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/65 (43%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I +
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYIHRIGRTGRAGKS---GQSITFVS 344
Query: 157 KSGMG 161
+ MG
Sbjct: 345 PNEMG 349
>gi|312867114|ref|ZP_07727324.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
gi|311097243|gb|EFQ55477.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
parasanguinis F0405]
Length = 536
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 156/266 (58%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L TL++++ ++ + LV+ TRELA Q +E RF +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPTLEKIDVDNTVIQALVIAPTRELAVQSQEELFRFGRS-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE D+M
Sbjct: 97 GVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHIETLILDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I P T+Q ++FSAT+ + I+ + +FM +P V + + +LT
Sbjct: 156 L-NMGFLEDIEAIISRVPETRQTLLFSATMPEAIKRIGVQFMKEPEHVKIAAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH +
Sbjct: 214 VDQYYIRVKEGEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +RL+ ++FK+ + L + A+D
Sbjct: 274 DQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 51/99 (51%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGK---TGQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E + T E AFQ K+
Sbjct: 349 G--------YLQIIENLTKKRMKGMKPATAEEAFQAKKQ 379
>gi|50914526|ref|YP_060498.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
gi|50903600|gb|AAT87315.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS10394]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|71734200|ref|YP_275777.1| DEAD/DEAH box helicase [Pseudomonas syringae pv. phaseolicola
1448A]
gi|71554753|gb|AAZ33964.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas syringae
pv. phaseolicola 1448A]
Length = 570
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 54 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 113
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 114 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 172
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 173 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 230
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 231 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 290
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 291 AQNQRERVIDSLKDGR--LDIVVATD 314
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 309 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 351
>gi|315223209|ref|ZP_07865070.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
gi|315187641|gb|EFU21395.1| DEAD/DEAH box helicase [Streptococcus anginosus F0211]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + V LV+ TRELA Q +E RF +
Sbjct: 56 AMAGKDVIGQAQTGTGKTAAFGFPTLEKINTENPVVQALVIAPTRELAVQSQEELFRFGR 115
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 116 -SKGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 173
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 174 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPTHVKIAAK-ELT 231
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F IH
Sbjct: 232 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIH 291
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L I A+D
Sbjct: 292 GDLDQGKRLRVLRDFKNGN--LDILVATD 318
Score = 61.6 bits (148), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 313 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 369
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + T E AFQ K+
Sbjct: 370 G--------YLQVIESLTKKRMKGMKPATAEEAFQAKKK 400
>gi|363752737|ref|XP_003646585.1| hypothetical protein Ecym_4755 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890220|gb|AET39768.1| hypothetical protein Ecym_4755 [Eremothecium cymbalariae
DBVPG#7215]
Length = 398
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 98/276 (35%), Positives = 152/276 (55%), Gaps = 5/276 (1%)
Query: 137 ARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196
A R T+ + G D++ QA+SG GKTA F +A LQ ++ + LV+ TRELA QI
Sbjct: 48 AIQSRAITQIIKGKDVIAQAQSGTGKTATFTIAMLQIIDMKSKDCQALVLSPTRELAVQI 107
Query: 197 SKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256
S+ YM N+ GG +Q+D +V GTPGR+L ++ + LN
Sbjct: 108 SQVVTNLGGYM-NVVAHACTGGKALQQDINKF-NKGCHVVSGTPGRVLDTIKRRALNTRH 165
Query: 257 LKHFILDECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
+K +LDE D++L + L ++ + +IF P + QV++ SAT+SK++ V KK M DP++
Sbjct: 166 IKMLVLDEADELLSDSLGFKQQIYDIFTKLPTSVQVVLISATISKDVLEVVKKLMTDPVK 225
Query: 316 VYVDDEAKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374
+ V + +++L ++Q++V + KE K L +L D L NQ VIF + + LS L
Sbjct: 226 LLVKRD-QISLDVIKQYHVNVEKEEWKFDTLCDLYDSLTINQCVIFCNTKKKVDWLSRKL 284
Query: 375 SEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+ NF SIH M Q+ER K +F+ L I+
Sbjct: 285 LQTNFAVSSIHGDMQQDEREKVMNDFRSGSSRLLIS 320
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D++++++V NYD+PE + Y+HR+ R+GRFG K +
Sbjct: 316 RLLISTDVWARGIDVQQISLVINYDIPELLENYIHRIGRSGRFGRKGI 363
>gi|33152628|ref|NP_873981.1| ATP-dependent RNA helicase [Haemophilus ducreyi 35000HP]
gi|33148852|gb|AAP96370.1| cold-shock DEAD box protein-A [Haemophilus ducreyi 35000HP]
Length = 606
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 142/266 (53%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GSDVLGMAQTGSGKTAAFSLPLLAQIDPNQRHPQMLVMAPTRELAIQVADACEQFTKNMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+V +GG LK Q+VVGTPGRIL +R LNLS LK +LDE D+M
Sbjct: 103 GIRVVTVYGGQRYDIQLRALK-QGSQVVVGTPGRILDHIRRGTLNLSTLKSIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + ++FM DP EV + + +
Sbjct: 162 L-RMGFIDDVETVMAELPEKHQTALFSATMPEPIRRITRRFMSDPKEVKIQATQR-SAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN+ L L+V EF+ +IF ++ T I ++ L + +++ M
Sbjct: 220 ITQSYWLVNGFRKNEALLRFLEVEEFDAAIIFTRTKTGTIDITELCERNGYRTAALNGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R + + K L I A+D
Sbjct: 280 TQQAREQTLDKLKSGR--LDILVATD 303
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 24/43 (55%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D+ER+++V NYD+P DS++Y+HR+ R GR G
Sbjct: 298 ILVATDVAARGLDVERISLVVNYDIPLDSESYVHRIGRTGRAG 340
>gi|229009737|ref|ZP_04166960.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|229055077|ref|ZP_04195508.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|423485535|ref|ZP_17462217.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
gi|423491260|ref|ZP_17467904.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|423501944|ref|ZP_17478561.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|423596874|ref|ZP_17572899.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|423602239|ref|ZP_17578239.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|423665253|ref|ZP_17640392.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|423671681|ref|ZP_17646685.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|423672515|ref|ZP_17647454.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|228721261|gb|EEL72786.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus AH603]
gi|228751532|gb|EEM01335.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus mycoides DSM
2048]
gi|401151508|gb|EJQ58957.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER074]
gi|401161714|gb|EJQ69077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus CER057]
gi|401218539|gb|EJR25216.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD048]
gi|401226140|gb|EJR32681.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VD078]
gi|401290577|gb|EJR96269.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM022]
gi|401291502|gb|EJR97173.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM034]
gi|401311621|gb|EJS16907.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus VDM062]
gi|402441494|gb|EJV73449.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BtB2-4]
Length = 538
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|77460208|ref|YP_349715.1| DEAD/DEAH box helicase-like protein [Pseudomonas fluorescens Pf0-1]
gi|398977484|ref|ZP_10687155.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
gi|77384211|gb|ABA75724.1| cold-shock dead-box protein A [Pseudomonas fluorescens Pf0-1]
gi|398137917|gb|EJM26952.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM25]
Length = 557
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLQTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALDAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|385304324|gb|EIF48346.1| eukaryotic initiation factor 4a [Dekkera bruxellensis AWRI1499]
Length = 442
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 107/321 (33%), Positives = 153/321 (47%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKPEILR I F G Y H A R
Sbjct: 70 FDDLKLKPEILRGI------------FAYG--------------------YEHPSAIQQR 97
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
+ G D+L QA+SG GKTA F +A LQ ++ L+M TRELA QI K
Sbjct: 98 AILPIIEGRDVLAQAQSGTGKTATFTIAALQNIDEKKKETQALIMAPTRELALQIQKVVL 157
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
++ N+ V GG + +D E LK QIVVGTPGR+ ++ +K FI
Sbjct: 158 AIGLHL-NVSVHASIGGKAVSEDIEALK-QGAQIVVGTPGRVYDMIERGFFRTEGVKMFI 215
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
+DE D+ML + + +F+ P QV++ SAT+ +++ V FM P+ + V +
Sbjct: 216 MDEADEMLSS-GFKEQIYNVFKXLPKEVQVVLLSATMPQDVLEVTSTFMRXPIRILVKKD 274
Query: 322 AKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q++V + E K L +L D + Q VIF + + L+ L+E NF
Sbjct: 275 -ELTLEGIKQYFVDVDAEQYKFDCLCDLYDAISVTQAVIFCNTRRKVEELTQKLTENNFT 333
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH +TQEER EF+
Sbjct: 334 VSAIHADLTQEERDTIMTEFR 354
Score = 47.8 bits (112), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 359 RILISTDLLARGIDVQQVSLVINYDLPXNKENYIHRIG 396
>gi|383480233|ref|YP_005389127.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|383494150|ref|YP_005411826.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
gi|378928223|gb|AFC66429.1| RNA helicase SrmB [Streptococcus pyogenes MGAS15252]
gi|378929877|gb|AFC68294.1| RNA helicase SrmB [Streptococcus pyogenes MGAS1882]
Length = 539
Score = 154 bits (390), Expect = 7e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ L+ T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMK--------LLRPATAEEAFQAKKK 379
>gi|397619807|gb|EJK65412.1| hypothetical protein THAOC_13729 [Thalassiosira oceanica]
Length = 454
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/256 (37%), Positives = 143/256 (55%), Gaps = 5/256 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D++ Q++SG GKTAVF ++ LQ L+ + V+V+ TRELA Q + +
Sbjct: 116 VRGRDVIAQSQSGTGKTAVFSISALQLLDDRVKDPQVMVLSPTRELAEQTQRVVASLGDF 175
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
MS K GG + D + L+ Q+V GTPGR+ L++ L LK FI+DE D
Sbjct: 176 MS-AKCHACIGGRSLGDDRKALQA-GCQVVSGTPGRVYDLIKRGDLTTRDLKAFIIDEAD 233
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +I+R P + QV++ SATL E+ + KFM DP+ + V + +LTL
Sbjct: 234 EMLNK-GFKEQIYDIYRYLPPSTQVVLVSATLPVEVLEMTDKFMQDPVRILVKRD-ELTL 291
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q YV + KE+ K L +L D L Q VIF + + L+ + E NF +IH
Sbjct: 292 EGIRQFYVAVEKEDWKLDTLIDLYDSLTVTQAVIFCNTKQKVDWLTGKMRESNFTVSAIH 351
Query: 386 RGMTQEERLKKYQEFK 401
M QE+R K +EF+
Sbjct: 352 GDMAQEDREKVMEEFR 367
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT+L+GRG+D+++V++V YD+P + + Y+HR+ R+GRFG K V
Sbjct: 372 RVLIATDLWGRGIDVQQVSLVVCYDLPPNRELYIHRIGRSGRFGRKGV 419
>gi|315302253|ref|ZP_07873161.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
gi|313629376|gb|EFR97601.1| dead-box ATP-dependent rna helicase ydbr [Listeria ivanovii FSL
F6-596]
Length = 526
Score = 154 bits (390), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 38 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 97 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDNVETLVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 156 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 213
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 214 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 273
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 274 GDLTQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|392429044|ref|YP_006470055.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
gi|419776490|ref|ZP_14302412.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|383845901|gb|EID83301.1| DEAD/DEAH box helicase / helicase C-terminal domain multi-domain
protein [Streptococcus intermedius SK54]
gi|391758190|dbj|BAM23807.1| ATP-dependent RNA helicase [Streptococcus intermedius JTH08]
Length = 514
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + + LV+ TRELA Q +E RF +
Sbjct: 35 AMEGKDVIGQAQTGTGKTAAFGFPTLEKINTENPFIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLNHVEILILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKDPTHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ + F A IH
Sbjct: 211 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGFKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNGN--LDVLVATD 297
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + + E AFQ K+
Sbjct: 349 G--------YLQIIESLTKKRMKGMKPASAEEAFQAKKK 379
>gi|357239848|ref|ZP_09127182.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
gi|356751604|gb|EHI68756.1| DEAD/DEAH box helicase [Streptococcus ictaluri 707-05]
Length = 569
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/256 (36%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 57 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPTRELAVQSQEELFRFGR 116
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 117 D-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALRLEQVETLILDEA 174
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 175 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 232
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 233 NVNVEQFYVRVKEQEKFDTMTRLMDVQQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 292
Query: 386 RGMTQEERLKKYQEFK 401
+ Q +RL+ ++FK
Sbjct: 293 GDLDQNKRLRVIRDFK 308
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 50/99 (50%), Gaps = 11/99 (11%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 310 DQVDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGK---TGESITFVS 366
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195
+ MG L +ET + + T E AFQ
Sbjct: 367 PNEMG--------YLSMIETLTKKQMLPLKPATAEEAFQ 397
>gi|355571182|ref|ZP_09042434.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
gi|354825570|gb|EHF09792.1| DEAD/DEAH box helicase domain protein [Methanolinea tarda NOBI-1]
Length = 441
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 86/253 (33%), Positives = 147/253 (58%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA +G GKTA F + L+ LE V LV+C TRELA Q+S+E + ++YM
Sbjct: 41 GHDMVGQAHTGTGKTAAFGIPLLEMLEPDRPAVQALVLCPTRELAIQVSEELRKLARYMG 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG PI++ L+ +V+ TPGR+L + + ++LS ++ +LDE D+M
Sbjct: 101 GVSVLPVYGGQPIERQVAVLRK-GVHVVIATPGRLLDHLSRRTVDLSQVRVTVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D+ +IF P +Q ++FSAT+S+EI + +KF+ DP V V +L +
Sbjct: 160 LD-MGFAEDIAKIFTRLPEKRQNVLFSATMSREILALAQKFLKDPRMVRV-VHGQLAVPV 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y +++E+EK + L LLD + ++F + R +++ L + + A S+H M
Sbjct: 218 IEQRYFEVRESEKVEVLSRLLDYYNPDLALVFCNTKRRVDEVASQLQARGYLAESLHGDM 277
Query: 389 TQEERLKKYQEFK 401
Q+ER + F+
Sbjct: 278 DQKERERVMSRFR 290
Score = 61.6 bits (148), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 34/43 (79%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D+E + IVFN+D+P+D + Y+HR+ R GR G
Sbjct: 296 ILVATDVAARGIDVEEIGIVFNFDVPQDPEYYIHRIGRTGRAG 338
>gi|116872279|ref|YP_849060.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116741157|emb|CAK20277.1| ATP-dependent RNA helicase [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 518
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S Y
Sbjct: 39 GKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS-YDK 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE D+M
Sbjct: 98 HVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 157 L-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMTALL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH +
Sbjct: 215 IEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDL 274
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FK+
Sbjct: 275 TQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|449665538|ref|XP_002154660.2| PREDICTED: uncharacterized protein LOC100198812 [Hydra
magnipapillata]
Length = 1139
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 88/273 (32%), Positives = 149/273 (54%), Gaps = 12/273 (4%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A G D++CQAKSG GKT VF + L+ + + S + VLV+ TRE+A QI + +
Sbjct: 51 AKCGADLVCQAKSGTGKTCVFAVTALESINLSLSKLQVLVLAPTREIAHQIHDVIMKIGQ 110
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
M ++K +F GG+PIQ D + +K+ I +GTPGRI +L+ + + ++ F+LDE
Sbjct: 111 KMKSLKCSLFIGGMPIQHDVDSIKSC--HIAIGTPGRIKSLIESNIMLTKSIRLFVLDEA 168
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+LE+ + + I+ + P KQV+ SAT + + +M++P+ V ++ + L
Sbjct: 169 DKLLEE-GFQEQINWIYSTLPKQKQVLALSATYPQHLADYLSIYMNEPIHVRINTD-DLN 226
Query: 326 LHGLQQHYVKLKE--------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
L G++Q + +K NEK + L ++ + F+Q ++F +R L TLL+++
Sbjct: 227 LKGVRQMFTTVKHHALPNLLYNEKCEALLNCIENVPFHQCMVFSNYQSRASHLCTLLNKK 286
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+P I Q RLK E K + + +T
Sbjct: 287 GWPCTFIAGSQLQPTRLKAISELKSYSCRILVT 319
Score = 74.7 bits (182), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 36/63 (57%), Positives = 46/63 (73%), Gaps = 6/63 (9%)
Query: 87 LKPEILRAIVD-----CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
L+P L+AI + C RILV T+L RG+D ++VN+V N DMP D++TYLHRV RAGR
Sbjct: 298 LQPTRLKAISELKSYSC-RILVTTDLSARGIDCDKVNLVVNLDMPWDTETYLHRVGRAGR 356
Query: 142 FGT 144
FGT
Sbjct: 357 FGT 359
>gi|348672361|gb|EGZ12181.1| hypothetical protein PHYSODRAFT_352190 [Phytophthora sojae]
Length = 407
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ Q++SG GKTAVF ++ LQ L+T+ + LV+ TRELA Q K
Sbjct: 68 AIQGRDLIAQSQSGTGKTAVFSISVLQSLDTSSNETQALVISPTRELAEQTQKVVLALGD 127
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M N++ GG + +D L Q+V GTPGRI ++R + L +K ++DE
Sbjct: 128 FM-NVQCHACIGGKSVGEDIRRLD-FGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEA 185
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + +I+R P + QV++ SAT+ +E+ + +KFM++P++V V + +LT
Sbjct: 186 DEMLNK-GFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRD-ELT 243
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q +V + KE K L +L D L Q VIF + + L+ + E NF ++
Sbjct: 244 LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTAKMREANFTVSAM 303
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q+ER QEF+ + IT
Sbjct: 304 HGDMPQKERDAIMQEFRSGGSRVLIT 329
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++GRG+D+++V++V YD+P + + Y+HR+ R+GRFG K V
Sbjct: 325 RVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGV 372
>gi|328768329|gb|EGF78376.1| eIF4AIII protein [Batrachochytrium dendrobatidis JAM81]
Length = 445
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 101/312 (32%), Positives = 159/312 (50%), Gaps = 14/312 (4%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
+I+ + + G D+ R +N++ P A R + G D++ QA+SG
Sbjct: 37 KIITSFDQMGLKEDLLRGIFAYNFEKPS---------AIQQRAIAPILKGRDVIAQAQSG 87
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL 219
GKTA F ++ LQ ++TT L++ TRELA QI YM N++ GG
Sbjct: 88 TGKTATFSISVLQTIDTTRRQTQALILSPTRELATQIQSVVLALGDYM-NVQCHACIGGT 146
Query: 220 PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279
I +D L H +V GTPGR+ +++ + L +K ILDE D+ML + + +
Sbjct: 147 SIGEDIRKLD-HGQHVVSGTPGRVFDMIKRRNLQTRDIKMLILDEADEMLSK-GFKEQIY 204
Query: 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL-KE 338
+++R P + QV++ SATL ++ + KFM DP+ V V + +LTL G++Q +V + KE
Sbjct: 205 DVYRYLPPSTQVVILSATLPHDVLDMTSKFMTDPVRVLVKRD-ELTLEGIKQFFVAVEKE 263
Query: 339 NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398
K L +L D L Q VIF + + L+ + E NF ++H M Q+ER Q
Sbjct: 264 EWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMREANFTVAAMHGEMPQKERDAIMQ 323
Query: 399 EFKDFHKGLAIT 410
EF+ + IT
Sbjct: 324 EFRSGASRVLIT 335
Score = 65.9 bits (159), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 331 RVLITTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 378
>gi|209559644|ref|YP_002286116.1| ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
gi|209540845|gb|ACI61421.1| Putative ATP-dependent RNA helicase [Streptococcus pyogenes NZ131]
Length = 539
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.2 bits (134), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|315281538|ref|ZP_07870145.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|386007591|ref|YP_005925869.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|404407318|ref|YP_006690033.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
gi|422408998|ref|ZP_16485959.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|423099964|ref|ZP_17087671.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|307570401|emb|CAR83580.1| ATP-dependent RNA helicase [Listeria monocytogenes L99]
gi|313609827|gb|EFR85263.1| dead-box ATP-dependent rna helicase ydbr [Listeria monocytogenes
FSL F2-208]
gi|313614811|gb|EFR88348.1| dead-box ATP-dependent rna helicase ydbr [Listeria marthii FSL
S4-120]
gi|370793697|gb|EHN61530.1| DEAD/DEAH box helicase [Listeria innocua ATCC 33091]
gi|404241467|emb|CBY62867.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2376]
Length = 518
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 38 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 97 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 156 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 213
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 214 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 273
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 274 GDLTQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|46907098|ref|YP_013487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47092073|ref|ZP_00229866.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|254992756|ref|ZP_05274946.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-064]
gi|255521719|ref|ZP_05388956.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-175]
gi|258611720|ref|ZP_05241706.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293596169|ref|ZP_05228867.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|293596832|ref|ZP_05264606.2| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|300764074|ref|ZP_07074069.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|404280417|ref|YP_006681315.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404286275|ref|YP_006692861.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405749220|ref|YP_006672686.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|405752085|ref|YP_006675550.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|405754943|ref|YP_006678407.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|406703641|ref|YP_006753995.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424713744|ref|YP_007014459.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
gi|424822593|ref|ZP_18247606.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|46880365|gb|AAT03664.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes serotype 4b
str. F2365]
gi|47019513|gb|EAL10253.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 4b
H7858]
gi|258605664|gb|EEW18272.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-503]
gi|293582796|gb|EFF94828.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes HPB2262]
gi|293593090|gb|EFG00851.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-194]
gi|300515064|gb|EFK42116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N1-017]
gi|332311273|gb|EGJ24368.1| ATP-dependent RNA helicase [Listeria monocytogenes str. Scott A]
gi|404218420|emb|CBY69784.1| ATP-dependent RNA helicase [Listeria monocytogenes ATCC 19117]
gi|404221285|emb|CBY72648.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2378]
gi|404224143|emb|CBY75505.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2540]
gi|404227052|emb|CBY48457.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2755]
gi|404245204|emb|CBY03429.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406360671|emb|CBY66944.1| ATP-dependent RNA helicase [Listeria monocytogenes L312]
gi|424012928|emb|CCO63468.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
serotype 4b str. LL195]
Length = 519
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 38 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 97 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 156 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 213
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 214 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 273
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 274 GDLTQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|418977410|ref|ZP_13525229.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
gi|383349927|gb|EID27841.1| DEAD/DEAH box helicase [Streptococcus mitis SK575]
Length = 524
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 155/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELIRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.5 bits (140), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|422641175|ref|ZP_16704599.1| helicase [Pseudomonas syringae Cit 7]
gi|330953563|gb|EGH53823.1| helicase [Pseudomonas syringae Cit 7]
Length = 557
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P ++Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPESRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|322387454|ref|ZP_08061064.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|419842756|ref|ZP_14366093.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|421277111|ref|ZP_15727931.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
gi|321141983|gb|EFX37478.1| ATP-dependent RNA helicase DeaD [Streptococcus infantis ATCC
700779]
gi|385703701|gb|EIG40814.1| DEAD/DEAH box helicase [Streptococcus infantis ATCC 700779]
gi|395876392|gb|EJG87468.1| ATP-dependent RNA helicase DeaD [Streptococcus mitis SPAR10]
Length = 524
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAG 334
>gi|440745186|ref|ZP_20924482.1| helicase [Pseudomonas syringae BRIP39023]
gi|440372862|gb|ELQ09640.1| helicase [Pseudomonas syringae BRIP39023]
Length = 557
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 79/266 (29%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P ++Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPESRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|16799933|ref|NP_470201.1| hypothetical protein lin0859 [Listeria innocua Clip11262]
gi|217965039|ref|YP_002350717.1| DEAD/DEAH box helicase [Listeria monocytogenes HCC23]
gi|290892943|ref|ZP_06555933.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|386026184|ref|YP_005946960.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
gi|16413310|emb|CAC96091.1| lin0859 [Listeria innocua Clip11262]
gi|217334309|gb|ACK40103.1| cold-shock deAd box protein a (atp-dependent rna helicasedead)
[Listeria monocytogenes HCC23]
gi|290557519|gb|EFD91043.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J2-071]
gi|336022765|gb|AEH91902.1| putative ATP-dependent RNA helicase [Listeria monocytogenes M7]
Length = 516
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 36 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 95 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 154 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 212 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|226223484|ref|YP_002757591.1| ATP-dependent RNA helicase [Listeria monocytogenes serotype 4b str.
CLIP 80459]
gi|386731620|ref|YP_006205116.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
gi|417314932|ref|ZP_12101623.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|417317100|ref|ZP_12103725.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|225875946|emb|CAS04650.1| Putative ATP-dependent RNA helicase [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|328467139|gb|EGF38229.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1816]
gi|328475471|gb|EGF46234.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J1-220]
gi|384390378|gb|AFH79448.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 07PF0776]
Length = 517
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 90/257 (35%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S
Sbjct: 36 GLAGKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS- 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y +++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE
Sbjct: 95 YDKHVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 154 DEML-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH
Sbjct: 212 ALLIEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|227432573|ref|ZP_03914553.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
gi|227351656|gb|EEJ41902.1| DEAD box ATP-dependent RNA helicase SrmB [Leuconostoc mesenteroides
subsp. cremoris ATCC 19254]
Length = 536
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 147/254 (57%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 50 GRDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTAEELKKLGRD-K 108
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + ++ +LDE D+M
Sbjct: 109 RVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDSVRTLVLDEADEM 167
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 168 L-NMGFLDDIEAIISKTPAERQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 224
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 225 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGD 284
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 285 LTQQMRSRVLAQFK 298
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 304 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGV 350
>gi|157377161|ref|YP_001475761.1| DEAD/DEAH box helicase [Shewanella sediminis HAW-EB3]
gi|157319535|gb|ABV38633.1| DEAD/DEAH box helicase domain protein [Shewanella sediminis
HAW-EB3]
Length = 610
Score = 154 bits (389), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNSIDPNTNAPQILVLAPTRELAVQVAEAFGSYAKFMK 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG + + L+ PQI+VGTPGR++ +R L L LK +LDE D+M
Sbjct: 103 GLHVLPIYGGQSMHQQLNALR-RGPQIIVGTPGRVMDHMRRGTLKLESLKAMVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D++ I +P +Q+ +FSAT+ ++I+ V K++ +P+ V + T+
Sbjct: 162 L-KMGFIDDIEWILEHTPKQRQLALFSATMPEQIKRVANKYLSEPVHVKI-AATTTTVET 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V++ ++ K + L +L+V + ++IFV++ C+ L+ L + + + +H M
Sbjct: 220 IEQRFVQVSQHNKLEALVRVLEVEKTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + + K L I A+D
Sbjct: 280 NQQARERAVDQLK--RGTLDIIIATD 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%), Gaps = 3/53 (5%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
I++AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 298 IIIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRT---GMAIL 347
>gi|320589959|gb|EFX02415.1| eukaryotic initiation factor 4a-12 [Grosmannia clavigera kw1407]
Length = 403
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/335 (31%), Positives = 160/335 (47%), Gaps = 52/335 (15%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D + QA+SG GKTA F ++ LQ + T LV+ TRELA QI + YM
Sbjct: 66 GRDTIAQAQSGTGKTATFSISMLQVINTASRETQALVLSPTRELATQIQSVVKALGDYM- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L IV GTPGR+ ++R + L +K +LDE D++
Sbjct: 125 NVQCHACIGGTNVGEDIRKLD-QGQHIVSGTPGRVADMIRRRHLRTRNIKMLVLDEADEL 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L Q R + E++R P QV++ SATL +++ + KFM DP+ + V + +LTL G
Sbjct: 184 LNQ-GFREQIYEVYRYLPPATQVVVVSATLPQDVLEMTYKFMTDPVRILVKRD-ELTLEG 241
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
L+Q+++ + KE K L +L D L Q VIF + + L+ + E NF S+H
Sbjct: 242 LKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMRESNFTVSSMHGD 301
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
M Q+ER Q+F+ F+
Sbjct: 302 MPQKERDSIMQDFRQFNTRVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGR 361
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI F ++E D +IL +++ + I E+P
Sbjct: 362 FGRKGVAINFVTNE-DVRILRDIELYYSTQIDEMP 395
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLISTDVWARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
>gi|383826631|ref|ZP_09981754.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
gi|383332437|gb|EID10918.1| cold-shock DEAD-box protein, DeaD [Mycobacterium xenopi RIVM700367]
Length = 566
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 86/267 (32%), Positives = 145/267 (54%), Gaps = 7/267 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +++TT + LV+ TRELA Q+S+ + R+ ++
Sbjct: 50 GSDVVGLAQTGTGKTAAFAIPILSRIDTTSNATQALVLAPTRELALQVSEAFSRYGAHLP 109
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ +GG L+ Q+VVGTPGR++ + L+LS + + +LDE D+M
Sbjct: 110 RLTALPIYGGASYSVQLAGLR-RGAQVVVGTPGRVIDHLERGTLDLSRVDYLVLDEADEM 168
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL-H 327
L + DV+ I +P KQV +FSAT+ IR + K++H+P+E+ V EAK T
Sbjct: 169 L-AMGFAEDVERILSDTPEYKQVALFSATMPPAIRAITAKYLHEPLEITV--EAKTTTAE 225
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q Y+++ K L +L+V F +++FV++ ++ L + F A +I+
Sbjct: 226 NISQRYIQVAGPRKMDALTRVLEVEPFEAMIVFVRTKQATEEVAEKLCARGFSAAAINGD 285
Query: 388 MTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +R + KD GL I A+D
Sbjct: 286 IPQTQRERTIAALKD--GGLDILVATD 310
Score = 61.2 bits (147), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++RV+ V NYD+P D+++Y+HR+ R GR G
Sbjct: 305 ILVATDVAARGLDVDRVSHVLNYDIPHDTESYVHRIGRTGRAG 347
>gi|56807749|ref|ZP_00365611.1| COG0513: Superfamily II DNA and RNA helicases [Streptococcus
pyogenes M49 591]
Length = 385
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 55.8 bits (133), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|410906647|ref|XP_003966803.1| PREDICTED: eukaryotic initiation factor 4A-II-like [Takifugu
rubripes]
Length = 404
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 92/263 (34%), Positives = 149/263 (56%), Gaps = 4/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA FV++ LQ+++ + L++ TRELA QI K Y+
Sbjct: 67 GNDVIAQAQSGTGKTATFVISILQRIDMSLKETQALILAPTRELAQQIHKVVMALGDYL- 125
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N GG ++ D L+ +PQIVVGTPGR+ +++ K ++ +K F+LDE D+M
Sbjct: 126 NCVCHACIGGTNVRADILKLQATSPQIVVGTPGRVFDMIKRKVVHPDCIKMFVLDEADEM 185
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + EIF+ P QV++ SAT+ ++ V KFM DP+ + V E +L+L G
Sbjct: 186 LSR-GFKDQIYEIFQELPTDIQVVLLSATIPVDVLEVTTKFMRDPIRILVKKE-ELSLEG 243
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ + KE K L +L + L Q VIFV + + L+ + E++F ++H
Sbjct: 244 IRQFYIDVCKEEWKLDTLTDLYETLTITQAVIFVNTKRKVDWLTEKMKEKDFTVSAMHGD 303
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q++R +EF+ + IT
Sbjct: 304 MEQKDRDLIMKEFRSGSSRVLIT 326
Score = 66.2 bits (160), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 322 RVLITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGV 369
>gi|448083583|ref|XP_004195393.1| Piso0_004780 [Millerozyma farinosa CBS 7064]
gi|359376815|emb|CCE85198.1| Piso0_004780 [Millerozyma farinosa CBS 7064]
Length = 397
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 104/321 (32%), Positives = 159/321 (49%), Gaps = 37/321 (11%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F D LKP I+R I FG G Y+ P A R
Sbjct: 25 FDDLNLKPNIVRGI------------FGYG-----------YESPS---------AIQQR 52
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G D+L QA+SG GKTA F ++ LQ+++ + + L++ TRELA QI
Sbjct: 53 AILPITEGRDVLAQAQSGTGKTATFTISALQRIDENEKSTQALILAPTRELALQIQNVIT 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ N+ V GG ++ D E K+ Q+VVGTPGR+ ++ + +K FI
Sbjct: 113 HIGLYL-NVTVHASIGGTSMKDDIEAFKS-GVQVVVGTPGRVFDMIERRFFRTDKVKMFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + IFR P T QV++ SAT+ +++ V KFM++P+ + V +
Sbjct: 171 LDEADEMLSS-GFKEQIYNIFRLLPETTQVVLLSATMPQDVLEVTTKFMNNPVRILVKKD 229
Query: 322 AKLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q ++ + +E+ K L +L D + Q VIF + + L+T L +NF
Sbjct: 230 -ELTLEGIKQFFINVEQEDYKFDCLCDLYDSISVTQAVIFCNTRAKVEYLTTRLKAENFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+IH + Q ER EF+
Sbjct: 289 VSAIHADLPQGERDTIMNEFR 309
Score = 47.0 bits (110), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 351
>gi|422646970|ref|ZP_16710101.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
maculicola str. ES4326]
gi|330960515|gb|EGH60775.1| DEAD-box ATP dependent DNA helicase [Pseudomonas syringae pv.
maculicola str. ES4326]
Length = 559
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 154/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHLIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|194467658|ref|ZP_03073645.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
gi|194454694|gb|EDX43591.1| DEAD/DEAH box helicase domain protein [Lactobacillus reuteri
100-23]
Length = 497
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ +++ TRELA Q +E R K
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQAIIISPTRELAIQTQEELYRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V V +GG I++ + LK H PQI+VGTPGR+ + + L +K +LDE D+M
Sbjct: 97 HVRVQVVYGGADIRRQIKSLKQH-PQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + +FM DP V + + +LT
Sbjct: 156 L-NMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ++R K +FK+ L I A+D
Sbjct: 274 TQDKRSKIMWKFKN--NELDILVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 338
>gi|423473254|ref|ZP_17449996.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
gi|402426406|gb|EJV58531.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG6O-2]
Length = 535
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|255023649|ref|ZP_05295635.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL J1-208]
Length = 399
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S Y
Sbjct: 41 GKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS-YDK 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE D+M
Sbjct: 100 HVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 159 L-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMTALL 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH +
Sbjct: 217 IEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDL 276
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FK+
Sbjct: 277 TQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|167536684|ref|XP_001750013.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163771523|gb|EDQ85188.1| predicted protein [Monosiga brevicollis MX1]
Length = 341
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 97/265 (36%), Positives = 143/265 (53%), Gaps = 5/265 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D++ QA+SG GKTA F ++ LQ ++TT VLV+ TRELA QI K Y
Sbjct: 43 VKGRDVIAQAQSGTGKTATFSISALQTIDTTSRETQVLVLSPTRELAVQIQKVMLALGDY 102
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
MS ++ GG + +D L + IV GTPGR+ +++ + L +K ILDE D
Sbjct: 103 MS-VQCHACIGGTSVGEDIRKLD-YGQHIVSGTPGRVFDMIQRRNLRTRNIKMLILDEAD 160
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML Q + + +I+R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 161 EMLNQ-GFKDQIYDIYRYLPPATQVVLLSATLPNEILEMTTKFMTDPIRILVKRD-ELTL 218
Query: 327 HGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V + +E K L +L D L Q VIF + + L+ + E NF S+H
Sbjct: 219 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKQKVDWLTEKMREANFTVSSMH 278
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q++R EF+ + IT
Sbjct: 279 GDMLQKDRNDVMSEFRAGSSRVLIT 303
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 299 RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRIV 336
>gi|88799091|ref|ZP_01114671.1| DEAD/DEAH box helicase-like protein [Reinekea blandensis MED297]
gi|88778074|gb|EAR09269.1| DEAD/DEAH box helicase-like protein [Reinekea sp. MED297]
Length = 579
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 145/245 (59%), Gaps = 3/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L +++TT + LV+C TRELA Q+++ ++ +++ +
Sbjct: 42 GNDVLGLAQTGTGKTAAFSLPLLSRIDTTKNKPQALVLCPTRELAIQVAEAFQTYARGVD 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG ++ LK NPQ++VGTPGR++ +R L+LS LKH +LDE D+M
Sbjct: 102 NFHVLPIYGGADMRNQLRALK-QNPQVIVGTPGRVMDHLRRGTLDLSDLKHLVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ D+ I +P KQ +FSAT+ +I+ + ++ DP+++ + + L
Sbjct: 161 L-RMGFIEDIDWILEHTPKDKQTALFSATMPHQIKRITDQYQKDPVKIEI-KASHSELQQ 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q + + +K L +L++ ++N ++IFV++ C LS L+ + + A ++ +
Sbjct: 219 IEQLVWRARGLDKLDGLTRILEIEDWNAIIIFVRTRVECQFLSEKLAARGYAATALSGEV 278
Query: 389 TQEER 393
Q++R
Sbjct: 279 AQKQR 283
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 35/50 (70%), Gaps = 2/50 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG--TKAVL 148
I++AT++ RG+DIER+ V N+D+P D TY HR+ R GR G KA+L
Sbjct: 297 IIIATDVAARGIDIERITHVINWDIPGDVSTYTHRIGRTGRAGRSGKAIL 346
>gi|321479177|gb|EFX90133.1| hypothetical protein DAPPUDRAFT_300157 [Daphnia pulex]
Length = 404
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 142/263 (53%), Gaps = 5/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ LE +LV+ TRELA QI K YM
Sbjct: 68 GRDVIAQAQSGTGKTATFSISILQSLEIQTRETQILVLSPTRELAVQIQKVILALGDYM- 126
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + IV GTPGR+ ++R + L +K +LDE D+M
Sbjct: 127 NVQCHACIGGTNVGEDVRKLD-YGQHIVSGTPGRVFDMIRRRTLRTRSIKMLVLDEADEM 185
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 186 LNK-GFKEQIYDVYRYLPPATQVVLLSATLPHEILEMTSKFMTDPIRILVKRD-ELTLEG 243
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V + +E K L +L D L Q VIF + + L+ + E NF S+H
Sbjct: 244 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 303
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF++ + IT
Sbjct: 304 MPQKERDTIMKEFRNGQSRVLIT 326
Score = 65.1 bits (157), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 322 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 369
>gi|47094873|ref|ZP_00232487.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284801196|ref|YP_003413061.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284994338|ref|YP_003416106.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404283308|ref|YP_006684205.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404410105|ref|YP_006695693.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404412950|ref|YP_006698537.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
gi|405757863|ref|YP_006687139.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|47016755|gb|EAL07674.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes str. 1/2a
F6854]
gi|284056758|gb|ADB67699.1| hypothetical protein LM5578_0946 [Listeria monocytogenes 08-5578]
gi|284059805|gb|ADB70744.1| hypothetical protein LM5923_0900 [Listeria monocytogenes 08-5923]
gi|404229931|emb|CBY51335.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC5850]
gi|404232810|emb|CBY54213.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2372]
gi|404235745|emb|CBY57147.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC2479]
gi|404238649|emb|CBY60050.1| ATP-dependent RNA helicase [Listeria monocytogenes SLCC7179]
Length = 522
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S Y
Sbjct: 41 GKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS-YDK 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE D+M
Sbjct: 100 HVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 159 L-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMTALL 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH +
Sbjct: 217 IEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDL 276
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FK+
Sbjct: 277 TQAKRMSVLRKFKE 290
Score = 59.3 bits (142), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 295 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 351
Query: 161 G 161
G
Sbjct: 352 G 352
>gi|423334318|ref|ZP_17312098.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
gi|4409804|gb|AAD20136.1| autoaggregation-mediating protein [Lactobacillus reuteri ATCC
53608]
gi|337728126|emb|CCC03217.1| ATP-dependent RNA helicase [Lactobacillus reuteri ATCC 53608]
Length = 497
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/266 (33%), Positives = 154/266 (57%), Gaps = 6/266 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L ++ ++T + N+ +++ TRELA Q +E R K
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPIIENVDTENPNIQAIIISPTRELAIQTQEELYRLGKD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V V +GG I++ + LK H PQI+VGTPGR+ + + L +K +LDE D+M
Sbjct: 97 HVRVQVVYGGADIRRQIKSLKQH-PQILVGTPGRLRDHINRHTVKLDHIKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + +P +Q ++FSAT+ EI+ + +FM DP V + + +LT
Sbjct: 156 L-NMGFLEDIESIIKETPDDRQTLLFSATMPPEIKRIGVQFMSDPETVRIKAK-ELTTDL 213
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV+ ++ EK + L+DV + + ++F ++ R LS L + + A IH +
Sbjct: 214 VDQYYVRARDYEKFDIMTRLIDVQDPDLTIVFGRTKRRVDELSKGLIARGYNAAGIHGDL 273
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ++R K +FK+ L I A+D
Sbjct: 274 TQDKRSKIMWKFKN--NELDILVATD 297
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/47 (53%), Positives = 33/47 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P D D+Y+HR+ R GR G V
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPSDPDSYVHRIGRTGRAGHHGV 338
>gi|16802907|ref|NP_464392.1| hypothetical protein lmo0866 [Listeria monocytogenes EGD-e]
gi|254827809|ref|ZP_05232496.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|254911550|ref|ZP_05261562.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|254935876|ref|ZP_05267573.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|386043190|ref|YP_005961995.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|386046528|ref|YP_005964860.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|386049793|ref|YP_005967784.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|386053133|ref|YP_005970691.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|16410269|emb|CAC98944.1| lmo0866 [Listeria monocytogenes EGD-e]
gi|258600190|gb|EEW13515.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL N3-165]
gi|258608464|gb|EEW21072.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes F6900]
gi|293589496|gb|EFF97830.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J2818]
gi|345533519|gb|AEO02960.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes J0161]
gi|345536424|gb|AEO05864.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes 10403S]
gi|346423639|gb|AEO25164.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes FSL R2-561]
gi|346645784|gb|AEO38409.1| ATP-dependent RNA helicase DeaD [Listeria monocytogenes Finland
1998]
gi|441470507|emb|CCQ20262.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes]
gi|441473637|emb|CCQ23391.1| DEAD-box ATP-dependent RNA helicase CshA [Listeria monocytogenes
N53-1]
Length = 520
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S Y
Sbjct: 39 GKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS-YDK 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE D+M
Sbjct: 98 HVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 157 L-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMTALL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH +
Sbjct: 215 IEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDL 274
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FK+
Sbjct: 275 TQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 G 161
G
Sbjct: 350 G 350
>gi|399520276|ref|ZP_10761052.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
gi|399111717|emb|CCH37611.1| ATP-dependent RNA helicase, DEAD box family [Pseudomonas
pseudoalcaligenes CECT 5344]
Length = 560
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ T L++ TRELA Q++ +E +SK M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILSKIDPTKREPQALILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ Q++V TPGR++ +R + LS ++H +LDE D+M
Sbjct: 103 GLNVVAVYGGAPMGPQLKAIR-QGAQVIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF + P ++Q ++FSATL IR + +K + +P V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFEAMPESRQSVLFSATLPHSIRAIAEKHLREPQHVKIAAKTQ-TVSR 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ ++ FV++ + L+ L + F A +++ +
Sbjct: 220 IEQAHLMIHADQKTNAVLRLLEVEDFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|301112965|ref|XP_002998253.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
infestans T30-4]
gi|262112547|gb|EEY70599.1| eukaryotic initiation factor 4A-III, putative [Phytophthora
infestans T30-4]
Length = 406
Score = 154 bits (389), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 151/266 (56%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ Q++SG GKTAVF ++ LQ L+T+ + LV+ TRELA Q K
Sbjct: 67 AIQGRDLIAQSQSGTGKTAVFSISILQSLDTSSNETQALVVSPTRELAEQTQKVVLALGD 126
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M N++ GG + +D L Q+V GTPGRI ++R + L +K ++DE
Sbjct: 127 FM-NVQCHACIGGKSVGEDIRRLD-FGVQVVSGTPGRIFDMIRRRNLRTRNIKMLVIDEA 184
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + +I+R P + QV++ SAT+ +E+ + +KFM++P++V V + +LT
Sbjct: 185 DEMLNK-GFKEQIYDIYRYLPPSTQVLLVSATMPQEVLDLTRKFMNEPVKVLVKRD-ELT 242
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q +V + KE K L +L D L Q VIF + + L++ + E NF ++
Sbjct: 243 LEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTSKMREANFTVSAM 302
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q+ER QEF+ + IT
Sbjct: 303 HGDMPQKERDAIMQEFRSGGSRVLIT 328
Score = 64.3 bits (155), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++GRG+D+++V++V YD+P + + Y+HR+ R+GRFG K V
Sbjct: 324 RVLITTDVWGRGLDVQQVSLVICYDLPNNRELYIHRIGRSGRFGRKGV 371
>gi|237799048|ref|ZP_04587509.1| helicase, partial [Pseudomonas syringae pv. oryzae str. 1_6]
gi|331021902|gb|EGI01959.1| helicase [Pseudomonas syringae pv. oryzae str. 1_6]
Length = 332
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/266 (30%), Positives = 155/266 (58%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLRDPKHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 48.5 bits (114), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/35 (51%), Positives = 27/35 (77%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHR 332
>gi|453382103|dbj|GAC83310.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia paraffinivorans
NBRC 108238]
Length = 580
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/254 (31%), Positives = 143/254 (56%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +L+T+ L++ TRELA Q+S+ + R+S +M
Sbjct: 53 GRDVVGLAQTGTGKTAAFAIPILSRLDTSAKTPQALILAPTRELALQVSEAFGRYSAHMP 112
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG L+ Q++VGTPGR++ + K L++S L+ +LDE D+M
Sbjct: 113 EVKVLPIYGGQSYGVQLAGLR-RGAQVIVGTPGRVIDHLDRKTLDISNLEFLVLDEADEM 171
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + DV+ I +P +KQV +FSAT+ IR + +++++DP E+ V + T
Sbjct: 172 L-TMGFAEDVERILAETPDSKQVALFSATMPSAIRRLAQRYLNDPQEITVKSKTA-TAQN 229
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y+++ K L L+V EF+ +++FV++ L+ L + AV+I+ +
Sbjct: 230 ITQRYLQVSHQRKLDALTRFLEVEEFDAMIVFVRTKQATEELAEKLRSRGLSAVAINGDL 289
Query: 389 TQEERLKKYQEFKD 402
Q +R + + K+
Sbjct: 290 AQAQRERTINQLKN 303
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++R++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 308 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 350
>gi|419493712|ref|ZP_14033437.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
gi|379592285|gb|EHZ57101.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA47210]
Length = 524
Score = 154 bits (389), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/269 (34%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ T + + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRTEEVTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|345022779|ref|ZP_08786392.1| ATP-dependent RNA helicase [Ornithinibacillus scapharcae TW25]
Length = 490
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/257 (33%), Positives = 146/257 (56%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F + L++++T+ V LV+ TRELA Q+++E R +
Sbjct: 36 ALAGHDVIGQAQTGTGKTAAFGIPMLEKVDTSARKVQGLVVAPTRELAIQVAEELNRLGR 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ ++V +GG P+ + LK PQIVV TPGR+L R + + ++ +LDE
Sbjct: 96 F-KGVRVLPVYGGAPMDRQIRSLK-DGPQIVVATPGRLLDHFRRRTIRADIVNTVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++EI + P +Q ++FSAT+ KEIR + M+ P EV V + ++T
Sbjct: 154 DEML-NMGFIDDIREILKQVPSERQTLLFSATMPKEIRDIATNLMNSPKEVKVKAK-EMT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ + Q +V++ E K L LLD+ ++F ++ R ++ L + F + IH
Sbjct: 212 VENIDQQFVEIPEKYKFDTLTNLLDMQNPELAIVFSRTKKRVDEITEGLQARGFRSEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ +FK+
Sbjct: 272 GDLTQGKRMSVLNKFKN 288
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAG 335
>gi|240949643|ref|ZP_04753978.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
NM305]
gi|240295901|gb|EER46577.1| cold-shock DEAD box protein A-like protein [Actinobacillus minor
NM305]
Length = 604
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 143/266 (53%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ + +LVM TRELA Q++ E+F+K M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPILAQIDPEQRHPQMLVMAPTRELAIQVADACEQFTKNMR 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG LK + Q+VVGTPGRIL +R L+LS LK +LDE D+M
Sbjct: 103 GIRTVTIYGGQRYDIQIRALK-NGAQVVVGTPGRILDHIRRGTLDLSALKAIVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ + P Q +FSAT+ + IR + K+FM DP EV + ++ +
Sbjct: 162 L-RMGFIEDVETVMAELPEDHQTALFSATMPEPIRRITKRFMKDPQEVKI-QASQRSAPD 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + KN L L+V +F+ +IF ++ T I ++ L + A +++ M
Sbjct: 220 IAQSYWLVNGFRKNDALLRFLEVEDFDAAIIFTRTKTGTIDIAELCERNGYRAAALNGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
TQ+ R + + K L I A+D
Sbjct: 280 TQQSREQALDKLKSGR--LDIIVATD 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+DI+R+++V NYD+P D+++Y+HR+ R GR G
Sbjct: 298 IIVATDVAARGIDIDRISLVVNYDIPLDAESYVHRIGRTGRAG 340
>gi|404214520|ref|YP_006668715.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
gi|403645319|gb|AFR48559.1| DNA and RNA helicase, Superfamily II [Gordonia sp. KTR9]
Length = 590
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 142/254 (55%), Gaps = 3/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +L+T+ L++ TRELA Q+S+ + R+S +M
Sbjct: 55 GRDVVGLAQTGTGKTAAFAIPILSRLDTSARTPQALILAPTRELALQVSEAFGRYSAHMP 114
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG L+ Q++VGTPGR++ + K L++S L+ +LDE D+M
Sbjct: 115 EVKVLPIYGGQSYGVQLAGLR-RGAQVIVGTPGRVIDHLDRKTLDISGLEFLVLDEADEM 173
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + DV+ I +P TKQV +FSAT+ IR + +K+++ P E+ V + T
Sbjct: 174 L-TMGFAEDVERILAETPDTKQVALFSATMPSAIRRLAQKYLNSPQEITVKSKTA-TAQN 231
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y+++ K L L+V F+ +++FV++ L+ L + F AV+I+ +
Sbjct: 232 ITQRYLQVSHQRKLDALTRFLEVETFDAMIVFVRTKQATEELAEKLRSRGFSAVAINGDL 291
Query: 389 TQEERLKKYQEFKD 402
Q +R + + K+
Sbjct: 292 AQAQRERTINQLKN 305
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++R++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 310 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 352
>gi|432331921|ref|YP_007250064.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
gi|432138630|gb|AGB03557.1| DNA/RNA helicase, superfamily II [Methanoregula formicicum SMSP]
Length = 533
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 152/267 (56%), Gaps = 7/267 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+ QA++G GKTA F + + +++ + +V +V+C TRELA QI++E+ +M
Sbjct: 42 GRDVTAQAQTGTGKTAAFGIPIIGRIDPSRRSVQAIVLCPTRELAIQIAEEFSNLLAHMP 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I V +GG PI++ L+ IV+GTPGR++ + + L L ++ +LDE D+M
Sbjct: 102 RISVLPVYGGQPIERQLRALQA-GVHIVIGTPGRVMDHLDRRTLRLEDVETVVLDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++ I R P +Q ++FSAT+ K I + ++F + P V V + A+LT+
Sbjct: 161 LD-MGFRDDIELILRKVPQKRQTLLFSATMPKPILEISRQFQNKPEFVRV-EYAELTVPQ 218
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y++++E EK L L+D+ + N +IF + R LST + + + A +H M
Sbjct: 219 IEQSYIEVREREKLDVLCRLIDLADPNLAIIFCNTKRRAEELSTKVRARGYRADELHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLA-ITFASD 414
Q +R + F KG+ I A+D
Sbjct: 279 KQSQRDRV---MGGFRKGIIDILIATD 302
Score = 57.4 bits (137), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 38/51 (74%), Gaps = 3/51 (5%)
Query: 93 RAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ I+D IL+AT++ RG+D++ V++V NYD+P+D + Y+HR+ R GR G
Sbjct: 292 KGIID---ILIATDVAARGIDVDDVDMVINYDIPQDVEYYVHRIGRTGRAG 339
>gi|116617572|ref|YP_817943.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides ATCC 8293]
gi|116096419|gb|ABJ61570.1| Superfamily II DNA and RNA helicase [Leuconostoc mesenteroides
subsp. mesenteroides ATCC 8293]
Length = 528
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 147/254 (57%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 38 GRDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTAEELKKLGRD-K 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + ++ +LDE D+M
Sbjct: 97 RVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLDDIEAIISKTPAERQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 213 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLAQFK 286
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGV 338
>gi|423525845|ref|ZP_17502297.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
gi|401165636|gb|EJQ72953.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus HuA4-10]
Length = 533
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 146/257 (56%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKNKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|229589245|ref|YP_002871364.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
gi|440738349|ref|ZP_20917884.1| cold-shock dead-box protein A [Pseudomonas fluorescens BRIP34879]
gi|447916005|ref|YP_007396573.1| cold-shock dead-box protein A [Pseudomonas poae RE*1-1-14]
gi|229361111|emb|CAY47974.1| cold-shock dead-box protein A [Pseudomonas fluorescens SBW25]
gi|440381262|gb|ELQ17804.1| cold-shock dead-box protein A [Pseudomonas fluorescens BRIP34879]
gi|445199868|gb|AGE25077.1| cold-shock dead-box protein A [Pseudomonas poae RE*1-1-14]
Length = 557
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|94992721|ref|YP_600820.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
gi|94546229|gb|ABF36276.1| ATP-dependent RNA helicase [Streptococcus pyogenes MGAS2096]
Length = 416
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/257 (36%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 55.8 bits (133), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAG 334
>gi|330719371|ref|ZP_08313971.1| superfamily II DNA/RNA helicase [Leuconostoc fallax KCTC 3537]
Length = 551
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/256 (33%), Positives = 148/256 (57%), Gaps = 6/256 (2%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
++G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q + E ++ +
Sbjct: 36 LVGKDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTADELKKLGRD 95
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++ V V FGG I++ + LK+H PQI+VGTPGR+L K + L + +LDE D
Sbjct: 96 -KHVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHTNRKTVKLDHVNTLVLDEAD 153
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LT 325
+ML + D++ I +P T+Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 154 EML-NMGFLDDIEAIIEKTPATRQTLLFSATMPPAIKLIGVKFMTNPEHIQI--EAKELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q++V+++ENEK + + DV ++F ++ R L+ L + + A +H
Sbjct: 211 TDLVDQYFVRVRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELARGLEARGYHAAGLH 270
Query: 386 RGMTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 271 GDLTQQMRSRVLAQFK 286
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G + V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGV 338
>gi|381336049|ref|YP_005173824.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
gi|356644015|gb|AET29858.1| superfamily II DNA/RNA helicase [Leuconostoc mesenteroides subsp.
mesenteroides J18]
Length = 540
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 147/254 (57%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q ++E ++ +
Sbjct: 50 GRDVIGQAQTGTGKTAAFGLPILEHIDLNNKNIQALIVSPTRELAIQTAEELKKLGRD-K 108
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + ++ +LDE D+M
Sbjct: 109 RVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDNVRTLVLDEADEM 167
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 168 L-NMGFLDDIEAIISKTPAERQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 224
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+++ENEK + + DV ++F ++ R LS L + + A +H
Sbjct: 225 LVDQYFVRMRENEKFDTMTRIFDVQAPKLAIVFGRTKRRVEELSRGLEARGYHAAGLHGD 284
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 285 LTQQMRSRVLAQFK 298
Score = 60.8 bits (146), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G K V
Sbjct: 304 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAKGV 350
>gi|312959777|ref|ZP_07774293.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
gi|311285943|gb|EFQ64508.1| RNA-binding:Dead/DEAH box helicase [Pseudomonas fluorescens WH6]
Length = 557
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|157135582|ref|XP_001656675.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|108870174|gb|EAT34399.1| AAEL013359-PA [Aedes aegypti]
Length = 347
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/266 (35%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D++ QA+SG GKTA F +A LQQ++T+ + L++ TRELA QI K
Sbjct: 65 CIKGHDVIAQAQSGTGKTATFSIAILQQIDTSIAECQALILAPTRELATQIQKVVIALGD 124
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
Y+ + GG ++ D L+ IVVGTPGR+ ++ L S +K F+LDE
Sbjct: 125 YL-GAQCHACIGGTNVRDDMRKLEM-GCHIVVGTPGRVHDMISRNVLRPSHIKLFVLDEA 182
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + +Q++FR P+ QV++ SAT+ E+ V FM DP+++ V E +LT
Sbjct: 183 DEMLSR-GFKDQIQDVFRMLPNDVQVILLSATMPAEVLEVSTHFMRDPIKILVKKE-ELT 240
Query: 326 LHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q Y+ +K EN K L +L D L Q VIF + + L+ ++ Q+F S+
Sbjct: 241 LEGIKQFYIDVKQENWKLGTLIDLYDTLSITQAVIFCNTRRKVDQLTADMTSQSFTVSSM 300
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q +R ++F+ + IT
Sbjct: 301 HGDMDQRDRDLIMKQFRTGSSRVLIT 326
>gi|334347344|ref|XP_001370190.2| PREDICTED: eukaryotic initiation factor 4A-II-like [Monodelphis
domestica]
Length = 404
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 145/266 (54%), Gaps = 4/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K
Sbjct: 64 AIKGYDVIAQAQSGTGKTATFAISILQQLEIELKETQALVLAPTRELAQQIQKVILALGD 123
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE
Sbjct: 124 YMGA-TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEA 182
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + EIF+ QV++ SAT+ ++ V KKFM DP+ + V E +LT
Sbjct: 183 DEMLSR-GFKDQIYEIFQKLSTNIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELT 240
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q Y+ + +E K L +L + L Q VIF+ + + L+ + ++F ++
Sbjct: 241 LEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSAL 300
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q+ER +EF+ + IT
Sbjct: 301 HGDMDQKERDVIMREFRSGSSRVLIT 326
Score = 45.8 bits (107), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 322 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 359
>gi|398878164|ref|ZP_10633293.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
gi|398885243|ref|ZP_10640161.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398192826|gb|EJM79956.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM60]
gi|398200850|gb|EJM87748.1| DNA/RNA helicase, superfamily II [Pseudomonas sp. GM67]
Length = 557
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|423553834|ref|ZP_17530161.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
gi|401182654|gb|EJQ89786.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus ISP3191]
Length = 528
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|395499709|ref|ZP_10431288.1| cold-shock dead-box protein A [Pseudomonas sp. PAMC 25886]
gi|395794713|ref|ZP_10474031.1| cold-shock dead-box protein A [Pseudomonas sp. Ag1]
gi|421138535|ref|ZP_15598596.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
fluorescens BBc6R8]
gi|395341086|gb|EJF72909.1| cold-shock dead-box protein A [Pseudomonas sp. Ag1]
gi|404510241|gb|EKA24150.1| ATP-dependent RNA helicase, DEAD box family protein [Pseudomonas
fluorescens BBc6R8]
Length = 557
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPATRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|332523459|ref|ZP_08399711.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
gi|332314723|gb|EGJ27708.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus porcinus
str. Jelinkova 176]
Length = 538
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGASIDKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVEQYYVRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFK 401
+ Q +RL+ ++FK
Sbjct: 271 GDLDQNKRLRVIRDFK 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQVDILVATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LKPATAEEAFQAKKK 379
>gi|326433091|gb|EGD78661.1| eIF4AIII-PA [Salpingoeca sp. ATCC 50818]
Length = 366
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 97/263 (36%), Positives = 144/263 (54%), Gaps = 5/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ ++TT VLV+ TRELA QI K YMS
Sbjct: 58 GRDVIAQAQSGTGKTATFSISALQAIDTTTRETQVLVLSPTRELAVQIQKVVLALGDYMS 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ GG I +D L + IV GTPGR+ +++ + L +K ILDE D+M
Sbjct: 118 -VQCHACIGGQSIGEDIRKLD-YGQHIVSGTPGRVFDMIQRRNLRTRSIKMLILDEADEM 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +I+R P QV++ SATL E+ + KFM DP+ V V + +LTL G
Sbjct: 176 LNE-GFKEQIYDIYRYLPPATQVVLVSATLPHEVLEMTTKFMTDPVRVLVKRD-ELTLEG 233
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V + +E K L +L D L Q VIF + + L+ + E NF S+H
Sbjct: 234 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTEKMKEANFTVSSMHGD 293
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q++R + QEF+ + IT
Sbjct: 294 MPQKKRNEIMQEFRSGATRVLIT 316
Score = 52.8 bits (125), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 35/49 (71%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR +GR +L
Sbjct: 312 RVLITTDVWARGLDVQQVSLVINYDLPNNRELYIHRPRSSGRLVPTRIL 360
>gi|326693280|ref|ZP_08230285.1| ATP-dependent RNA helicase/autoaggregation-mediating protein
[Leuconostoc argentinum KCTC 3773]
Length = 518
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 149/254 (58%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L+ ++ + N+ L++ TRELA Q + E ++ +
Sbjct: 38 GKDVIGQAQTGTGKTAAFGLPILENIDLDNKNIQALIVSPTRELAIQTADELKKLG-HDK 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ V V FGG I++ + LK+H PQI+VGTPGR+L + K + + +K +LDE D+M
Sbjct: 97 HVDVQVVFGGADIRRQIQNLKSH-PQILVGTPGRLLDHINRKTVKIDQVKTLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK-LTLH 327
L + D++ I +++P +Q ++FSAT+ I+ + KFM +P + + EAK LT
Sbjct: 156 L-NMGFLDDIEAIIKNTPADRQTLLFSATMPPAIKRIGVKFMTNPEHIQI--EAKELTTD 212
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q++V+ ++NEK + +LDV ++F ++ R L+ L + + A +H
Sbjct: 213 LVDQYFVRARDNEKFDTMTRILDVQAPTLAIVFGRTKRRVEELARGLEARGYHAAGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
+TQ+ R + +FK
Sbjct: 273 LTQQMRSRVLSQFK 286
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+D++ V+ V+N+D+P+D ++Y+HR+ R GR G + V
Sbjct: 292 ILVATDVAARGLDVKDVSHVYNFDIPQDPESYVHRIGRTGRAGAEGV 338
>gi|124487920|gb|ABN12043.1| putative eukaryotic translation initiation factor 4A
[Maconellicoccus hirsutus]
Length = 372
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/266 (34%), Positives = 149/266 (56%), Gaps = 4/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
V G D++ QA+SG GKTA F ++ LQQ++ + + L++ TRELA Q K
Sbjct: 79 CVKGHDVIAQAQSGTGKTATFSISILQQIDPSLNECQALILAPTRELAQQTQKVVLALGD 138
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M N K GG I++D L+ Q+VVGTPGR+ ++ K L + +K F+LDE
Sbjct: 139 FMENCKCHACIGGTNIREDMRRLE-EGAQVVVGTPGRVYDMIIRKSLKIDHIKVFVLDEA 197
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + ++F+ P QV++ SAT+ +++ V K+FM +P+++ V E +LT
Sbjct: 198 DEMLSR-GFKEQIHQVFQHLPQDVQVILLSATMPQDVLEVSKQFMRNPVQILVKKE-ELT 255
Query: 326 LHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV + KE K L +L D L Q VIF + + L+ +++ + S+
Sbjct: 256 LEGIKQFYVFVEKEEWKLDTLCDLYDTLSITQAVIFCNTRRKVDWLTDKMTKNDHTVSSM 315
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q+ER K + F+ + IT
Sbjct: 316 HGDMDQKEREKIMKHFRTGSSRVLIT 341
Score = 49.7 bits (117), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 29/36 (80%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR
Sbjct: 337 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHR 372
>gi|330503492|ref|YP_004380361.1| DEAD/DEAH box helicase [Pseudomonas mendocina NK-01]
gi|328917778|gb|AEB58609.1| DEAD/DEAH box helicase domain-containing protein [Pseudomonas
mendocina NK-01]
Length = 560
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 153/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ VL++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ QI+V TPGR++ +R + LS ++H +LDE D+M
Sbjct: 103 GVNVVAVYGGAPMGPQLKAIR-QGAQIIVATPGRLVDHLRRDEKVLSTIQHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF + P ++Q ++FSATL IR + +K + +P + + + + T+
Sbjct: 162 L-KLGFMDDLEIIFEAMPESRQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQ-TVSR 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ ++ FV++ + L++ L + F A +++ +
Sbjct: 220 IEQAHLMIHADQKTNAVLRLLEVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|313217515|emb|CBY38596.1| unnamed protein product [Oikopleura dioica]
gi|313229431|emb|CBY24018.1| unnamed protein product [Oikopleura dioica]
Length = 401
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/254 (36%), Positives = 141/254 (55%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++TLQ L+T+ L++C TRELA Q+ K YM
Sbjct: 65 GRDVIAQAQSGTGKTATFSISTLQVLDTSVRETQALILCPTRELAQQVQKVILALGDYM- 123
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ V GG + +D L +VVGTPGR ++R + L +K ILDE D+M
Sbjct: 124 NVQAHVCIGGTNVGEDIRKLD-FGQHVVVGTPGRTFDMIRRRNLRTRNIKLLILDEADEM 182
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV + SATL EI + KFM DP+ + V + +LTL G
Sbjct: 183 LNR-GFKEQIYDVYRYLPPATQVCLVSATLPHEILEMTHKFMSDPIRILVKRD-ELTLEG 240
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V + +E K L +L D L Q VIF + + L+ + E NF ++H
Sbjct: 241 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCSTKRKVDWLAEKMREANFTVSAMHGD 300
Query: 388 MTQEERLKKYQEFK 401
M Q+ER + +EF+
Sbjct: 301 MPQKERNEIMREFR 314
Score = 63.2 bits (152), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 319 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 366
>gi|414158100|ref|ZP_11414394.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
gi|410870645|gb|EKS18602.1| hypothetical protein HMPREF9188_00668 [Streptococcus sp. F0441]
Length = 525
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 156/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRIEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLHDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ I+ + +FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPDAIKRIGVQFMKEPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVEQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 35/98 (35%), Positives = 50/98 (51%), Gaps = 11/98 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I + + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVSPNEM 348
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
G LQ +E + T E AFQ K
Sbjct: 349 G--------YLQIIENLTKKRMKGLKPATAEEAFQAKK 378
>gi|423556774|ref|ZP_17533077.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
gi|401194089|gb|EJR01081.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus MC67]
Length = 535
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 89/257 (34%), Positives = 145/257 (56%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L ++ T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVNTNKEAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E K L LLD+ +IF ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKNKFDVLTRLLDIQSPELAIIFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|388471257|ref|ZP_10145466.1| cold-shock DEAD box protein A [Pseudomonas synxantha BG33R]
gi|388007954|gb|EIK69220.1| cold-shock DEAD box protein A [Pseudomonas synxantha BG33R]
Length = 557
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L ++ L++ TRELA Q++ +E ++K M
Sbjct: 43 GQDMIGQAQTGTGKTAAFALPILHCIDPAKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + LS + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLSTVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 L-KLGFMDDLEVIFKALPPTRQTVLFSATLPQSIRAIAERHLRDPQHVKIQTKTQ-TVTA 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 58.2 bits (139), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|171778647|ref|ZP_02919743.1| hypothetical protein STRINF_00595 [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|379704901|ref|YP_005203360.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
gi|171282604|gb|EDT48028.1| DEAD/DEAH box helicase [Streptococcus infantarius subsp.
infantarius ATCC BAA-102]
gi|374681600|gb|AEZ61889.1| ATP-dependent RNA helicase [Streptococcus infantarius subsp.
infantarius CJ18]
Length = 533
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 96/269 (35%), Positives = 158/269 (58%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL +++T+ + V LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLDKIDTSRNLVQALVIAPTRELAVQGQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLEHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P ++Q ++FSAT+ + I+ + FM +P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPESRQTLLFSATMPEPIKRIGVNFMKNPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELIDQYYLRVKENEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L I A+D
Sbjct: 271 GDLDQGKRLRVLRDFKNDN--LDILVATD 297
Score = 62.0 bits (149), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 55/103 (53%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I +
Sbjct: 288 DNLDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG A+ T ++++ + T E AFQ K+
Sbjct: 345 PNEMGYLAIIENLTKKRMKG--------LKPATAEEAFQAKKK 379
>gi|319787050|ref|YP_004146525.1| DEAD/DEAH box helicase [Pseudoxanthomonas suwonensis 11-1]
gi|317465562|gb|ADV27294.1| DEAD/DEAH box helicase domain protein [Pseudoxanthomonas suwonensis
11-1]
Length = 458
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/292 (31%), Positives = 155/292 (53%), Gaps = 7/292 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA +G GKTA F L LQ+L+ +S LV+C TRELA Q+ ++ R + +
Sbjct: 39 GRDLLAQAPTGSGKTAAFGLGLLQRLDPAESRCQALVLCPTRELADQVGRQLRRLATGIP 98
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+K+ V GG+ ++ L+ H+PQ+VVGTPGR+ L R + L+L +++ +LDE D+M
Sbjct: 99 NLKLSVLTGGMALEPQIASLEAHDPQVVVGTPGRVQELARKRVLHLGVVRTLVLDEADRM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + V+EI +Q ++FSAT IR + ++ + DP+EV V E +
Sbjct: 159 LD-MGFEEPVREIANRCHGQRQTLLFSATFPDSIRELARQLLRDPVEVSV--EGGESAPD 215
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q + + + K + LL V+F + ++ L + F A+++H M
Sbjct: 216 IEQRFFDVDAQFRQKAVAGLLLRYRPESAVVFCNTRKDVDEVAGSLRQFGFSALALHGDM 275
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
Q +R + + ++ + ASD + +V+D V ELP ++D
Sbjct: 276 EQRDRDEVLLQLA--NRSCNVLVASDVAARGL--DVEDLAAVVNYELPTDVD 323
Score = 41.2 bits (95), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 24/34 (70%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 134
+LVA+++ RG+D+E + V NY++P D D Y H
Sbjct: 294 VLVASDVAARGLDVEDLAAVVNYELPTDVDAYRH 327
>gi|317047085|ref|YP_004114733.1| DEAD/DEAH box helicase [Pantoea sp. At-9b]
gi|316948702|gb|ADU68177.1| DEAD/DEAH box helicase domain protein [Pantoea sp. At-9b]
Length = 459
Score = 154 bits (388), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 80/245 (32%), Positives = 139/245 (56%), Gaps = 4/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+ QAK+G GKTA F + LQ+++ + + LV+C TRELA Q+S + +++
Sbjct: 40 GRDVRAQAKTGSGKTAAFGIGLLQRIDNSQFHTQALVLCPTRELADQVSNVLRQLARFTR 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIK+ GG P+ + L H P IVVGTPGRIL ++ L+L+ L+ +LDE D+M
Sbjct: 100 NIKILTLCGGQPMSAQRDSL-VHAPHIVVGTPGRILDHLKRDNLDLNQLQTLVLDEADRM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE + R D++ I +P +Q ++FSAT I + +++ D + V + EA+L
Sbjct: 159 LE-MGFRDDMEAIIGFTPAARQTLLFSATWPDTIASLSERYQRDALAVATETEAELP--A 215
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++++ +E+ L LL + V+F + C ++ L+++ A+++H +
Sbjct: 216 IEQRFIEVSASERTNLLSALLSQQQPTSCVVFCNTKRECDDIAAALNDRQISALALHGDL 275
Query: 389 TQEER 393
Q +R
Sbjct: 276 EQRDR 280
Score = 51.2 bits (121), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R+L+AT++ RG+DI+ + +V NY + D + +LHR+ R GR G
Sbjct: 293 RVLIATDVAARGLDIKSLALVVNYHLAWDPEVHLHRIGRTGRAG 336
>gi|421501869|ref|ZP_15948826.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
gi|400347612|gb|EJO95965.1| DEAD/DEAH box helicase [Pseudomonas mendocina DLHK]
Length = 560
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ VL++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + L+ QI+V TPGR++ +R LS ++H +LDE D+M
Sbjct: 103 GVNVVAVYGGAPMGPQLKALRM-GAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF + P ++Q ++FSATL IR + +K + +P + + + + T+
Sbjct: 162 L-KLGFMDDLEIIFEAMPESRQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQ-TVSR 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ ++ FV++ + L++ L + F A +++ +
Sbjct: 220 IEQAHLMIHADQKTNAVLRLLEVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|419706526|ref|ZP_14234046.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
gi|383283761|gb|EIC81705.1| Putative ATP-dependent RNA helicase [Streptococcus salivarius PS4]
Length = 527
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 91/257 (35%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLDKIRTEENTIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L++ IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGSSIEKQIKALRS-GAHIVVGTPGRLLDLIKRKALKLNHIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM DP V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVQFMKDPEHVKIKAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 NVNVDQYYIRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDELTRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 60.5 bits (145), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGES---GQSITFVA 344
Query: 157 KSGMG 161
+ MG
Sbjct: 345 PNEMG 349
>gi|418134760|ref|ZP_12771617.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
gi|353901997|gb|EHE77527.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA11426]
Length = 430
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRIEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|229844936|ref|ZP_04465073.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
6P18H1]
gi|229812070|gb|EEP47762.1| hypothetical protein CGSHi6P18H1_04237 [Haemophilus influenzae
6P18H1]
Length = 613
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 148/275 (53%), Gaps = 23/275 (8%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ ++ + +LVM TRELA Q++ E F KY
Sbjct: 42 GNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQ 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ +GG LK Q+VVGTPGRIL +R + LNLS L+ +LDE D+M
Sbjct: 102 GTRIVTLYGGQRYDIQLRALK-QGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD--------- 319
L ++ DV+ + P Q +FSAT+ + IR + K+FM+DP EV +
Sbjct: 161 L-RMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDI 219
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D++ +HG++ KN+ L L+V +F+ +IF ++ T + ++ LL + F
Sbjct: 220 DQSCWYVHGVR----------KNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGF 269
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ +++ MTQ+ R + ++ L I A+D
Sbjct: 270 RSAALNGDMTQQLREQTLDRLRN--GSLDIVVATD 302
Score = 61.2 bits (147), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 58/101 (57%), Gaps = 2/101 (1%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
I+VAT++ RG+DIER+++V NYD+P D+++Y+HR+ R GR G + + + + +
Sbjct: 297 IVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAGRSGRALLFVEPRERRLL 356
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
+ + ++E N VL C ++ +I+K+ E
Sbjct: 357 RNIEHLMKKGINEVEL--PNHLVLQECRRKKFVAKITKQLE 395
>gi|146307171|ref|YP_001187636.1| DEAD/DEAH box helicase [Pseudomonas mendocina ymp]
gi|145575372|gb|ABP84904.1| DEAD/DEAH box helicase domain protein [Pseudomonas mendocina ymp]
Length = 560
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 82/266 (30%), Positives = 152/266 (57%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ VL++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + L+ QI+V TPGR++ +R LS ++H +LDE D+M
Sbjct: 103 GVNVVAVYGGAPMGPQLKALRM-GAQIIVATPGRLVDHLRRDDKVLSTIQHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF + P ++Q ++FSATL IR + +K + +P + + + + T+
Sbjct: 162 L-KLGFMDDLEIIFEAMPESRQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQ-TVSR 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V +F+ ++ FV++ + L++ L + F A +++ +
Sbjct: 220 IEQAHLMIHADQKTNAVLRLLEVEDFDALIAFVRTKQATLDLASALEAKGFKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|255017210|ref|ZP_05289336.1| hypothetical protein LmonF_04463 [Listeria monocytogenes FSL
F2-515]
Length = 394
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 90/254 (35%), Positives = 147/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L + +++ +NV L++ TRELA Q+S+E + S Y
Sbjct: 39 GKDLIGQAQTGTGKTAAFGLPMIHKIDQKSNNVQALIIAPTRELAIQVSEELYKLS-YDK 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++V +GG I + LK NPQIVVGTPGRIL + + L L ++ +LDE D+M
Sbjct: 98 HVRVLAVYGGSDISRQIRSLK-KNPQIVVGTPGRILDHINRRTLKLDHVETLVLDEADEM 156
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D++ I + P +Q ++FSAT+ IR + ++FMH P + + + ++T
Sbjct: 157 L-NMGFIDDIETILKEVPAERQTLLFSATMPDPIRRIGERFMHSPELIRIKAK-EMTALL 214
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK+ E EK L LLDV ++F ++ R LS L + + A IH +
Sbjct: 215 IEQFFVKVHEKEKFDVLSRLLDVQAPELAIVFGRTKRRVDELSRALDMRGYVAEGIHGDL 274
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FK+
Sbjct: 275 TQAKRMSVLRKFKE 288
Score = 59.3 bits (142), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 55/109 (50%), Gaps = 9/109 (8%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G + GM I M
Sbjct: 293 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKE---GMAITFVQPREM 349
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209
G + T ++++ + + A Q+ E+F K +
Sbjct: 350 GYLRIVEETTKKRMQPLQAPTW------DEAFAGQLRVATEKFKKQLQK 392
>gi|167769539|ref|ZP_02441592.1| hypothetical protein ANACOL_00873 [Anaerotruncus colihominis DSM
17241]
gi|167668507|gb|EDS12637.1| DEAD/DEAH box helicase [Anaerotruncus colihominis DSM 17241]
Length = 572
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 138/254 (54%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ ++ +G GKTA F + ++++E+ VLV+ TRELA QI+ E +F+KY
Sbjct: 41 GADVIGRSSTGTGKTAAFGIPAVERIESGLKAPQVLVLSPTRELAMQIADEMRKFAKYKP 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ L+ N IV+GTPGR++ +R L L L+ +LDE D+M
Sbjct: 101 GVCVAAVYGGAPMDAQIRALRAAN--IVIGTPGRVMDHMRRHTLRLDDLRTVVLDEADEM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+Q I +P T+Q ++FSAT+ I + KF+HDP V + + T+
Sbjct: 159 L-NMGFLDDIQTILAETPDTRQTVLFSATMPPAILKITDKFLHDPQTVDI-RTGQRTIAA 216
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q + ++ + K L LL + + V+F + +L+ LS+ F A+ IH M
Sbjct: 217 VEQFFYRVPQARKMDALNLLLQYHDPKRAVVFCNTKAMVDSLTEYLSDHGFRALGIHGDM 276
Query: 389 TQEERLKKYQEFKD 402
Q R + Q F+D
Sbjct: 277 KQAGRTQVMQSFRD 290
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157
RILVAT++ RG+D+E + VFN+D+P++ + Y+HR+ R GR G + + ++C A+
Sbjct: 294 RILVATDVAARGIDVENIEAVFNFDIPQEFEHYIHRIGRTGRAG-RTGMSHTLVCGAR 350
>gi|157135580|ref|XP_001656674.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|157135584|ref|XP_001656676.1| DEAD box ATP-dependent RNA helicase [Aedes aegypti]
gi|94468792|gb|ABF18245.1| initiation factor EIF-4A [Aedes aegypti]
gi|108870173|gb|EAT34398.1| AAEL013359-PC [Aedes aegypti]
gi|108870175|gb|EAT34400.1| AAEL013359-PB [Aedes aegypti]
Length = 404
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 94/263 (35%), Positives = 146/263 (55%), Gaps = 5/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F +A LQQ++T+ + L++ TRELA QI K Y+
Sbjct: 68 GHDVIAQAQSGTGKTATFSIAILQQIDTSIAECQALILAPTRELATQIQKVVIALGDYLG 127
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ GG ++ D L+ IVVGTPGR+ ++ L S +K F+LDE D+M
Sbjct: 128 A-QCHACIGGTNVRDDMRKLEM-GCHIVVGTPGRVHDMISRNVLRPSHIKLFVLDEADEM 185
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + +Q++FR P+ QV++ SAT+ E+ V FM DP+++ V E +LTL G
Sbjct: 186 LSR-GFKDQIQDVFRMLPNDVQVILLSATMPAEVLEVSTHFMRDPIKILVKKE-ELTLEG 243
Query: 329 LQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ +K EN K L +L D L Q VIF + + L+ ++ Q+F S+H
Sbjct: 244 IKQFYIDVKQENWKLGTLIDLYDTLSITQAVIFCNTRRKVDQLTADMTSQSFTVSSMHGD 303
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q +R ++F+ + IT
Sbjct: 304 MDQRDRDLIMKQFRTGSSRVLIT 326
Score = 43.5 bits (101), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 29/38 (76%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + Y+HR+
Sbjct: 322 RVLITTDLLARGIDVQQVSLVINYDLPTLRENYIHRIG 359
>gi|421490441|ref|ZP_15937813.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
gi|400372931|gb|EJP25866.1| DEAD/DEAH box helicase [Streptococcus anginosus SK1138]
Length = 534
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/269 (35%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F TL+++ T + V LV+ TRELA Q +E RF +
Sbjct: 51 AMAGKDVIGQAQTGTGKTAAFGFPTLEKINTENPVVQALVIAPTRELAVQSQEELFRFGR 110
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + L + IVVGTPGR+L L++ K L L+ ++ ILDE
Sbjct: 111 -SKGVKVRSVYGGSSIEKQIKALHS-GAHIVVGTPGRLLDLIKRKALKLNHVETLILDEA 168
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + + +LT
Sbjct: 169 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPDAIKRIGVKFMKEPTHVKIAAK-ELT 226
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KENEK + L+DV + ++F ++ R L+ L + F IH
Sbjct: 227 TELVDQYYIRVKENEKFDTMTRLMDVEQPELSIVFGRTKRRVDELTRGLKIRGFRTEGIH 286
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L I A+D
Sbjct: 287 GDLDQGKRLRVLRDFKNGN--LDILVATD 313
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 37/99 (37%), Positives = 52/99 (52%), Gaps = 11/99 (11%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 308 ILVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 364
Query: 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G LQ +E+ + T E AFQ K+
Sbjct: 365 G--------YLQVIESLTKKRMKGMKPATAEEAFQAKKK 395
>gi|145635138|ref|ZP_01790843.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
gi|145267559|gb|EDK07558.1| ATP-dependent RNA helicase [Haemophilus influenzae PittAA]
Length = 613
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/275 (33%), Positives = 148/275 (53%), Gaps = 23/275 (8%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L L Q++ ++ + +LVM TRELA Q++ E F KY
Sbjct: 42 GNDVLGMAQTGSGKTAAFALPLLAQIDPSEKHPQMLVMAPTRELAIQVADACELFVKYAQ 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ +GG LK Q+VVGTPGRIL +R + LNLS L+ +LDE D+M
Sbjct: 102 GTRIVTLYGGQRYDIQLRALK-QGAQVVVGTPGRILDHIRRRTLNLSELRFIVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD--------- 319
L ++ DV+ + P Q +FSAT+ + IR + K+FM+DP EV +
Sbjct: 161 L-RMGFIDDVETVMAELPENHQTALFSATMPEPIRRITKRFMNDPQEVKIKVNNENAPDI 219
Query: 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
D++ +HG++ KN+ L L+V +F+ +IF ++ T + ++ LL + F
Sbjct: 220 DQSCWYVHGVR----------KNEALLRFLEVEDFDAAIIFARTKTGTLDITELLEKNGF 269
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ +++ MTQ+ R + ++ L I A+D
Sbjct: 270 RSAALNGDMTQQLREQTLDRLRN--GSLDIVVATD 302
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 23/43 (53%), Positives = 36/43 (83%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+DIER+++V NYD+P D+++Y+HR+ R GR G
Sbjct: 297 IVVATDVAARGIDIERISLVVNYDIPLDAESYVHRIGRTGRAG 339
>gi|423456146|ref|ZP_17432999.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
gi|401131812|gb|EJQ39461.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG5X1-1]
Length = 520
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKLGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 290 AIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|367017330|ref|XP_003683163.1| hypothetical protein TDEL_0H00930 [Torulaspora delbrueckii]
gi|359750827|emb|CCE93952.1| hypothetical protein TDEL_0H00930 [Torulaspora delbrueckii]
Length = 395
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 95/254 (37%), Positives = 144/254 (56%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ++++ + L++ TRELA QI K + +M
Sbjct: 59 GHDVLAQAQSGTGKTGTFSIAALQRIDSALKSPQALILAPTRELALQIQKVVIALAFHM- 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG Q+D E L+ + QIVVGTPGR+ ++ +K +K FILDE D+M
Sbjct: 118 DIKVHACIGGTSFQEDAEGLR--DAQIVVGTPGRVFDNIQRRKFKTDSIKMFILDEADEM 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + +IF P T QV++ SAT+ K++ V KFM +P+ + V + +LTL G
Sbjct: 176 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPKDVLEVTTKFMRNPVRILVKKD-ELTLEG 233
Query: 329 LQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+QQ Y+ + +E K L +L D + Q VIF + + L+ L NF SI+
Sbjct: 234 IQQFYINVEQELYKYDCLTDLYDSISVTQAVIFCNTRRKVEELTQKLKADNFTVSSIYSD 293
Query: 388 MTQEERLKKYQEFK 401
+ Q+ER +EF+
Sbjct: 294 LPQQERDIIMKEFR 307
Score = 47.4 bits (111), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPTNKENYIHRIG 349
>gi|407478557|ref|YP_006792434.1| DEAD/DEAH box helicase [Exiguobacterium antarcticum B7]
gi|407062636|gb|AFS71826.1| DEAD/DEAH box helicase domain protein [Exiguobacterium antarcticum
B7]
Length = 410
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 85/252 (33%), Positives = 145/252 (57%), Gaps = 3/252 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ +A++G GKT F+L L+Q++ + V L++ TRELA QI+ E + + M
Sbjct: 39 GRDLIGKAQTGTGKTLAFLLPILEQIDLDNKTVQALIVAPTRELARQIADETHKLIRNME 98
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+++ +GG + K + L PQI++GTPGRIL V L+LS LK +LDE D+M
Sbjct: 99 DVRALAVYGGQDVFKQIQRLG-RMPQIIIGTPGRILDHVGRGTLDLSDLKTLVLDEADQM 157
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L Q+ ++++I ++P +Q +M SAT+ ++ + K ++ DP+EV V+ E K+T+
Sbjct: 158 L-QIGFLPEIEDIIAAAPVDRQFVMLSATMPPKVEQLAKTYLRDPIEVQVESE-KVTVDA 215
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q V+ + K L +LD + +IF ++ R L+ L Q +P +H G+
Sbjct: 216 IEQFVVETTDRRKQATLRTMLDEMRPYAAIIFCRTQRRVSKLNEELQMQGYPTDELHGGL 275
Query: 389 TQEERLKKYQEF 400
TQ +R K +F
Sbjct: 276 TQGKREKAMAKF 287
Score = 58.9 bits (141), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 22/46 (47%), Positives = 34/46 (73%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
L+AT++ RG+D+ V VFNYD+P+D+++Y+HR+ R GR G V
Sbjct: 295 LIATDVASRGLDVTGVTHVFNYDLPDDAESYVHRIGRTGRAGNDGV 340
>gi|313890723|ref|ZP_07824348.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|416852122|ref|ZP_11909267.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
gi|313120824|gb|EFR43938.1| DEAD-box ATP-dependent RNA helicase CshA [Streptococcus
pseudoporcinus SPIN 20026]
gi|356739611|gb|EHI64843.1| DEAD/DEAH box helicase [Streptococcus pseudoporcinus LQ 940-04]
Length = 538
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 92/256 (35%), Positives = 149/256 (58%), Gaps = 4/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTDENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 D-KGVKVRSVYGGASIDKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM +P V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPEERQTLLFSATMPAPIKQIGVKFMKNPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVEQYYVRVKEQEKFDTMTRLMDVDQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFK 401
+ Q +RL+ ++FK
Sbjct: 271 GDLDQNKRLRVIRDFK 286
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQVDILVATDVAARGLDISNVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LKPATAEEAFQAKKK 379
>gi|333900885|ref|YP_004474758.1| DEAD/DEAH box helicase [Pseudomonas fulva 12-X]
gi|333116150|gb|AEF22664.1| DEAD/DEAH box helicase domain protein [Pseudomonas fulva 12-X]
Length = 557
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 81/266 (30%), Positives = 151/266 (56%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ VL++ TRELA Q++ +E +SK M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPLLSKIDPAKREPQVLILAPTRELALQVATAFETYSKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ Q++V TPGR++ +R + LS + H +LDE D+M
Sbjct: 103 GLNVVAVYGGAPMGPQLKAIR-QGAQVIVATPGRLVDHLRRDEKVLSTIAHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L +L D++ IF + P ++Q ++FSATL IR + +K + +P + + + + T+
Sbjct: 162 L-KLGFMDDLEVIFEAMPESRQSVLFSATLPHSIRAIAEKHLREPQHIKIAAKTQ-TVSR 219
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ + ++K + LL+V EF+ ++ FV++ + L+ L + F A +++ +
Sbjct: 220 IEQAHLMIHADQKTNAVLRLLEVEEFDALIAFVRTKQATLDLAAALEAKGFKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + + KD L I A+D
Sbjct: 280 AQNQRERVIESLKDGR--LDIVVATD 303
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGIDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>gi|293375719|ref|ZP_06621991.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325838961|ref|ZP_08166744.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
gi|292645662|gb|EFF63700.1| putative ATP-dependent RNA helicase DeaD [Turicibacter sanguinis
PC909]
gi|325490616|gb|EGC92928.1| DEAD-box ATP-dependent RNA helicase CshA [Turicibacter sp. HGF1]
Length = 538
Score = 153 bits (387), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/266 (32%), Positives = 150/266 (56%), Gaps = 5/266 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QA++G GKTA F+L L++++ + NV LV+C TRELA Q+ +E ++FS+
Sbjct: 41 GKDIIGQAQTGTGKTAAFMLPILEKIDPKNKNVQALVLCPTRELAVQVHEESKKFSRNNR 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ + +GG LK QIVVGTPGR++ +R L L LK +LDE D+M
Sbjct: 101 DVHILSIYGGQSYDPQIRALK-KGVQIVVGTPGRVMDHMRRGTLKLENLKMLVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + D++EI +P ++Q +MFSAT+++EI + K + +P V V E +L+
Sbjct: 160 L-NMGFKDDIEEILEKTPESRQTVMFSATMAREIMNIAKTYQKNPEVVKVVSE-ELSNKK 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+YV++K ++ + + +D++ ++F + L + L E+ + +H +
Sbjct: 218 IDQYYVEVKRQDRVQAMIRCIDMMGLTSSIVFTNTKREVDELVSKLQEEGYVTEGLHGDL 277
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + F+ K + I A+D
Sbjct: 278 KQAQRDRVMNSFR--RKNVNILVATD 301
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 31/43 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D+ V VFNYD+P + + Y+HR+ R GR G
Sbjct: 296 ILVATDIAARGIDVSNVEAVFNYDIPLNEENYVHRIGRTGRAG 338
>gi|420157279|ref|ZP_14664117.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
gi|394756572|gb|EJF39652.1| DEAD/DEAH box helicase [Clostridium sp. MSTE9]
Length = 414
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/252 (32%), Positives = 142/252 (56%), Gaps = 3/252 (1%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D+L QA +G GKTA F L L+ + D + +++C TRELA Q + ++ + Y I
Sbjct: 42 DLLVQAPTGTGKTAAFGLPILENVNPADRQIQAVILCPTRELAVQTTGVLKQMATYKQGI 101
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
+V +GG PIQ+ LK PQI+V TPGR++ +R + LS + +LDE D+ML+
Sbjct: 102 RVLALYGGEPIQRQIMALK-RCPQIIVATPGRMMDHMRRRTTRLSGVNCIVLDEADQMLD 160
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ R D+ I + P +Q ++FSATLS EI+ + ++ D ++ + + ++
Sbjct: 161 -MGFREDIHTILQCVPTERQTVLFSATLSDEIKTIAAQYQQDTKQICIQPNTA-SAKKVE 218
Query: 331 QHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q Y +++ N K L +LL +F+ ++FV + L++ L+E +PA +IH + Q
Sbjct: 219 QFYCEVRGNAKFSALLQLLQKKQFDLSLVFVATKVMAGDLASQLTEAGYPAEAIHGDLRQ 278
Query: 391 EERLKKYQEFKD 402
++R + + ++D
Sbjct: 279 KQRDQVMRRYRD 290
Score = 54.3 bits (129), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 20/41 (48%), Positives = 32/41 (78%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
ILVAT++ RG+D+ ++ V NYD+P D+++Y+HR+ R GR
Sbjct: 295 ILVATDVAARGIDVGGIDAVVNYDIPGDAESYVHRIGRTGR 335
>gi|336452174|ref|ZP_08622606.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
gi|336280990|gb|EGN74275.1| DNA/RNA helicase, superfamily II [Idiomarina sp. A28L]
Length = 580
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/274 (33%), Positives = 146/274 (53%), Gaps = 8/274 (2%)
Query: 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187
D+ T + + A G K VLG +A++G GKTA F L L ++T +LV+
Sbjct: 26 DTPTPIQQQAIPGLLAKKNVLG-----EAQTGTGKTAAFGLPALANIDTRVRGAQLLVVA 80
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV 247
TRELA Q+++ E KYM + V +GG + L+ Q+VVGTPGR++ +
Sbjct: 81 PTRELAIQVAESIEAMGKYMKGLNVATIYGGSSYGPQIKSLR-GGAQVVVGTPGRLMDHL 139
Query: 248 RNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
R L+LS LK +LDE D+ML + D++ I P T Q +FSAT+ +IR +
Sbjct: 140 RKGSLDLSALKMAVLDEADEML-NMGFVEDIEWIMEQVPDTAQRALFSATMPPQIRKIAN 198
Query: 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRC 367
KF+ DP+ V ++ + T + Q K++ K+ L LL+ +++ V++FV++
Sbjct: 199 KFLTDPVHVKIES-TQATKANIAQKAWKVQGMTKDAALERLLESIDYQLVLVFVRTRNDT 257
Query: 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
+ +S L EQ F A ++ M+QE+R + K
Sbjct: 258 LTVSAGLREQGFKAAGLNGDMSQEQRESTVSQLK 291
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
RILV T++ RG+D+ V V NYD+P+D+++Y+HR+ R GR G
Sbjct: 296 RILVGTDVVARGLDVPGVTHVINYDLPQDAESYVHRIGRTGRAG 339
>gi|281183435|gb|ADA53586.1| RE22480p [Drosophila melanogaster]
Length = 403
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
V G D++ QA+SG GKTA F +A LQQ++T+ L++ TRELA QI + +
Sbjct: 64 CVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGE 123
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM + GG +++D L++ +VVGTPGR+ ++ K L +K F+LDE
Sbjct: 124 YM-KVHSHACIGGTNVREDARILES-GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEA 181
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + +Q++F+ P QV++ SAT+ ++ V + FM DP+ + V E +LT
Sbjct: 182 DEMLSR-GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKE-ELT 239
Query: 326 LHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV +K EN K L +L D L Q VIF + + L+ +S NF ++
Sbjct: 240 LEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAM 299
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q +R ++F+ + IT
Sbjct: 300 HGDMEQRDREVIMKQFRSGSSRVLIT 325
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 321 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 358
>gi|340356606|ref|ZP_08679248.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
gi|339620533|gb|EGQ25102.1| ATP-dependent RNA helicase DeaD [Sporosarcina newyorkensis 2681]
Length = 526
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 91/254 (35%), Positives = 145/254 (57%), Gaps = 4/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + +++L+ + V LV+ TRELA Q+S+E + Y S
Sbjct: 64 GRDVIGQAQTGTGKTAAFGIPIIEKLDPKNPAVQALVIAPTRELAIQVSEEIYKVG-YGS 122
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
KV +GG I + L+ +NP IVVGTPGRIL + K L L ++ +LDE D+M
Sbjct: 123 RAKVLSVYGGQEIGRQIRALR-NNPNIVVGTPGRILDHINRKTLKLDNVQTLVLDEADEM 181
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+ I S P +Q ++FSAT+ IR + + FM +P V + + ++T+
Sbjct: 182 L-NMGFIEDINTILASVPAERQTLLFSATMPAPIRKIAETFMKNPEIVKIKSK-EMTVEN 239
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +VK E EK L LL+V + ++F ++ R L+ LS + + A IH +
Sbjct: 240 IEQFFVKAHEREKFDVLSRLLNVHQPELAIVFGRTKRRVDELAHALSIRGYLAEGIHGDL 299
Query: 389 TQEERLKKYQEFKD 402
TQ +R+ ++FKD
Sbjct: 300 TQAKRMSVLRQFKD 313
Score = 57.8 bits (138), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/61 (42%), Positives = 38/61 (62%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G GM I M
Sbjct: 318 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKS---GMAITFVTPREM 374
Query: 161 G 161
G
Sbjct: 375 G 375
>gi|307243618|ref|ZP_07525761.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
gi|306492987|gb|EFM64997.1| putative ATP-dependent RNA helicase DeaD [Peptostreptococcus
stomatis DSM 17678]
Length = 538
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 141/245 (57%), Gaps = 3/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F + L+ ++ + + +V+C TRELA Q+S+E + +KYM
Sbjct: 41 GHDVIGQAQTGTGKTASFSIPILENIDRDNRKLQAIVLCPTRELAIQVSEEVRKLAKYMQ 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I+ +GG PI + + LK Q+ +GTPGR++ + K L L +K +LDE D+M
Sbjct: 101 GIRTLPIYGGQPIDRQIKALKG-GVQVAIGTPGRVIDHINRKTLKLDQVKMVVLDEADEM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + R D++ I + P +Q +FSAT+ K I + KK+ DP+ + V + LT+
Sbjct: 160 LD-MGFREDIETILSNVPEERQTALFSATMPKAILELTKKYQKDPVHIKVVRKT-LTVSN 217
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q+Y++ +++ K + L LLDV V+F + L + L + + A S+H +
Sbjct: 218 IKQYYIETRKSNKLEVLTRLLDVYNPKLTVVFTNTKKGADELVSSLQARGYGADSLHGDL 277
Query: 389 TQEER 393
Q +R
Sbjct: 278 KQVQR 282
Score = 57.0 bits (136), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI+ V V NY++P+D + Y+HR+ R GR G + +
Sbjct: 296 ILVATDVAARGIDIDDVECVINYELPQDDEYYVHRIGRTGRAGREGI 342
>gi|423398827|ref|ZP_17376028.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|423409729|ref|ZP_17386878.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
gi|401646011|gb|EJS63645.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-1]
gi|401652844|gb|EJS70396.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG2X1-3]
Length = 531
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTNKEAVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 35/50 (70%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 290 AIEVLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|229083524|ref|ZP_04215862.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
gi|228699778|gb|EEL52425.1| DEAD-box ATP-dependent RNA helicase ydbR [Bacillus cereus Rock3-44]
Length = 527
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 148/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 60.1 bits (144), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
>gi|419433872|ref|ZP_13973990.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
gi|379576873|gb|EHZ41797.1| DEAD/DEAH box helicase family protein [Streptococcus pneumoniae
GA40183]
Length = 511
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/269 (34%), Positives = 154/269 (57%), Gaps = 6/269 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL+++ ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLEKIRIEEATIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K L L ++ ILDE
Sbjct: 95 S-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKALKLQDIETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + +FM P V + + +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPENRQTLLFSATMPDAIKRIGVQFMKAPEHVKIAAK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+Y+++KE EK + L+DV + ++F ++ R L+ L + F A IH
Sbjct: 211 TELVDQYYIRVKEQEKFDTMTRLMDVAQPELAIVFGRTKRRVDELTRGLKIRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +RL+ ++FK+ + L + A+D
Sbjct: 271 GDLDQNKRLRVLRDFKNGN--LDVLVATD 297
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 39/61 (63%), Gaps = 3/61 (4%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+NYD+P+D ++Y+HR+ R GR G G I A + M
Sbjct: 292 VLVATDVAARGLDISGVTHVYNYDIPQDPESYVHRIGRTGRAGKS---GQSITFVAPNEM 348
Query: 161 G 161
G
Sbjct: 349 G 349
>gi|139473559|ref|YP_001128275.1| DEAD/DEAH box helicase [Streptococcus pyogenes str. Manfredo]
gi|134271806|emb|CAM30039.1| DEAD box helicase family protein [Streptococcus pyogenes str.
Manfredo]
Length = 539
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 92/257 (35%), Positives = 150/257 (58%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L TL ++ T ++ + LV+ TRELA Q +E RF +
Sbjct: 35 ALEGKDVIGQAQTGTGKTAAFGLPTLNKIRTNENIIQALVIAPTRELAVQSQEELFRFGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+KV +GG I+K + LK+ IVVGTPGR+L L++ K + L ++ ILDE
Sbjct: 95 E-KGVKVRSVYGGSSIEKQIKALKS-GAHIVVGTPGRLLDLIKRKAVILDHVETLILDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P +Q ++FSAT+ I+ + KFM DP V + ++ +LT
Sbjct: 153 DEML-NMGFLEDIEAIISRVPADRQTLLFSATMPAPIKQIGVKFMKDPEHVQIKNK-ELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q+YV++KE EK + L+DV + ++F ++ R ++ L + F A IH
Sbjct: 211 NVNVDQYYVRVKEQEKFDTMTRLMDVNQPELSIVFGRTKRRVDEITRGLKLRGFRAEGIH 270
Query: 386 RGMTQEERLKKYQEFKD 402
+ Q +RL+ ++FK+
Sbjct: 271 GDLDQNKRLRVIRDFKN 287
Score = 56.6 bits (135), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/103 (33%), Positives = 54/103 (52%), Gaps = 11/103 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
D ILVAT++ RG+DI V V+NYD+ +D ++Y+HR+ R GR G G I +
Sbjct: 288 DQIDILVATDVAARGLDISGVTHVYNYDITQDPESYVHRIGRTGRAGKS---GESITFVS 344
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
+ MG ++ T +Q++ + T E AFQ K+
Sbjct: 345 PNEMGYLSMIENLTKKQMKP--------LRPATAEEAFQAKKK 379
>gi|17136248|ref|NP_476595.1| eukaryotic initiation factor 4a, isoform C [Drosophila
melanogaster]
gi|24582075|ref|NP_723137.1| eukaryotic initiation factor 4a, isoform A [Drosophila
melanogaster]
gi|24582078|ref|NP_723138.1| eukaryotic initiation factor 4a, isoform B [Drosophila
melanogaster]
gi|24582080|ref|NP_723139.1| eukaryotic initiation factor 4a, isoform D [Drosophila
melanogaster]
gi|386769186|ref|NP_001245907.1| eukaryotic initiation factor 4a, isoform E [Drosophila
melanogaster]
gi|442626267|ref|NP_001260117.1| eukaryotic initiation factor 4a, isoform F [Drosophila
melanogaster]
gi|12644381|sp|Q02748.3|IF4A_DROME RecName: Full=Eukaryotic initiation factor 4A; Short=eIF-4A;
AltName: Full=ATP-dependent RNA helicase eIF4A
gi|5052532|gb|AAD38596.1|AF145621_1 eukaryotic initiation factor-4a [Drosophila melanogaster]
gi|17861902|gb|AAL39428.1| GM14109p [Drosophila melanogaster]
gi|21464294|gb|AAM51950.1| GH17619p [Drosophila melanogaster]
gi|22945717|gb|AAF52317.2| eukaryotic initiation factor 4a, isoform A [Drosophila
melanogaster]
gi|22945718|gb|AAN10566.1| eukaryotic initiation factor 4a, isoform C [Drosophila
melanogaster]
gi|22945719|gb|AAN10567.1| eukaryotic initiation factor 4a, isoform B [Drosophila
melanogaster]
gi|22945720|gb|AAN10568.1| eukaryotic initiation factor 4a, isoform D [Drosophila
melanogaster]
gi|260166767|gb|ACX32995.1| LD22268p [Drosophila melanogaster]
gi|383291357|gb|AFH03581.1| eukaryotic initiation factor 4a, isoform E [Drosophila
melanogaster]
gi|440213413|gb|AGB92653.1| eukaryotic initiation factor 4a, isoform F [Drosophila
melanogaster]
Length = 403
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 93/266 (34%), Positives = 147/266 (55%), Gaps = 5/266 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
V G D++ QA+SG GKTA F +A LQQ++T+ L++ TRELA QI + +
Sbjct: 64 CVRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGE 123
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
YM + GG +++D L++ +VVGTPGR+ ++ K L +K F+LDE
Sbjct: 124 YM-KVHSHACIGGTNVREDARILES-GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEA 181
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + +Q++F+ P QV++ SAT+ ++ V + FM DP+ + V E +LT
Sbjct: 182 DEMLSR-GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKE-ELT 239
Query: 326 LHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV +K EN K L +L D L Q VIF + + L+ +S NF ++
Sbjct: 240 LEGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAM 299
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q +R ++F+ + IT
Sbjct: 300 HGDMEQRDREVIMKQFRSGSSRVLIT 325
Score = 45.8 bits (107), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 321 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIG 358
>gi|403727443|ref|ZP_10947652.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
gi|403203921|dbj|GAB91983.1| ATP-dependent DEAD-box RNA helicase DeaD [Gordonia rhizosphera NBRC
16068]
Length = 592
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 80/253 (31%), Positives = 141/253 (55%), Gaps = 3/253 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +L+ + + LV+ TRELA Q+++ + R+S +M
Sbjct: 54 GRDVVGLAQTGTGKTAAFAIPILSRLDISQRHPQALVLAPTRELALQVAEAFGRYSSHMP 113
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V +GG L+ Q++VGTPGR++ + L++S L + +LDE D+M
Sbjct: 114 EVRVLPIYGGQSYGVQLAGLR-RGAQVIVGTPGRVIDHLDRGTLDISDLSYLVLDEADEM 172
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + DV+ I +P KQV +FSAT+ IR + ++++HDP E+ V + T
Sbjct: 173 L-TMGFAEDVERILAETPDDKQVALFSATMPSAIRRLAQRYLHDPQEITVKSKTA-TAQN 230
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y+++ K L L+V F+ +++FV++ + L+ L + F AV+I+ M
Sbjct: 231 ITQRYLQVSHQRKLDALTRFLEVETFDAMIVFVRTKSGTEELAERLRSRGFSAVAINGDM 290
Query: 389 TQEERLKKYQEFK 401
Q +R + + K
Sbjct: 291 AQAQRERTINQLK 303
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/43 (51%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D++R++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 309 ILVATDVAARGLDVDRISHVVNYDIPHDTESYVHRIGRTGRAG 351
>gi|395241893|ref|ZP_10418893.1| RNA helicase DeaD [Lactobacillus pasteurii CRBIP 24.76]
gi|394480641|emb|CCI85133.1| RNA helicase DeaD [Lactobacillus pasteurii CRBIP 24.76]
Length = 490
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 101/293 (34%), Positives = 163/293 (55%), Gaps = 7/293 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ QA++G GKTA F L LQQLE + ++ +V+ TRELA Q +E R +
Sbjct: 35 ALAGKDVIGQAQTGTGKTAAFGLPILQQLEKHNKSIQAIVVEPTRELAIQTQEELFRLGR 94
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ V V +GG I + + LK H P I+VGTPGR+L ++ K ++LS +K +LDE
Sbjct: 95 D-QHAHVQVVYGGADIGRQIKALK-HAPAILVGTPGRLLDHLKRKTIDLSGVKTVVLDEA 152
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML+ + +D++ IF + + K ++FSAT+ K I + +KFMHDP E+ +LT
Sbjct: 153 DEMLD-MGFIQDIESIFEYAENRKHTLLFSATMPKPILKIGEKFMHDP-EIVRIKAKELT 210
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ Q++V+ KE EK + L+DV V+F ++ R L+ L + + A IH
Sbjct: 211 ADLIDQYFVRAKEAEKFDIMCRLIDVQGPELAVVFGRTKRRVDELTHGLQARGYNAAGIH 270
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
++Q R+ + FK L I A+D + ++ V ++ I + PD
Sbjct: 271 GDLSQARRMSVLKRFKS--SKLDILVATDVAARGLDISGVTHVYNYDIPQDPD 321
Score = 61.6 bits (148), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V V+NYD+P+D D+Y+HR+ R GR G +
Sbjct: 292 ILVATDVAARGLDISGVTHVYNYDIPQDPDSYVHRIGRTGRAGQNGI 338
>gi|398793546|ref|ZP_10553839.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
gi|398210331|gb|EJM96980.1| DNA/RNA helicase, superfamily II [Pantoea sp. YR343]
Length = 459
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 81/245 (33%), Positives = 138/245 (56%), Gaps = 4/245 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+ QAK+G GKTA F + L +++ + + L++C TRELA Q+S + +++
Sbjct: 40 GRDVRAQAKTGSGKTAAFGVGLLNRIDNSQFHTQALILCPTRELADQVSNVLRQLARFTR 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIK+ GG P+ + L H P IVVGTPGR+L ++ L+LS L+ +LDE D+M
Sbjct: 100 NIKILTLCGGQPMSAQRDSL-VHAPHIVVGTPGRLLDHLKRDNLDLSQLQTLVLDEADRM 158
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE + R D++ I +P T+Q ++FSAT I + ++F D + V +D K L
Sbjct: 159 LE-MGFRDDMEAIIGFTPETRQTLLFSATWPDTIASLSQRFQRDALAVATED--KTELPT 215
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +++ E++ L LL + V+F + C ++ L+E++ A+++H +
Sbjct: 216 IEQQFIEASAKERHSLLGALLSQQQPASCVVFCNTKRECDDVAAALNERDISALALHGDL 275
Query: 389 TQEER 393
Q +R
Sbjct: 276 EQRDR 280
Score = 50.4 bits (119), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 33/48 (68%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT++ RG+DI+ + +V N+ + D + ++HR+ R GR G K +
Sbjct: 293 RVLIATDVAARGLDIKSLALVVNFQLAWDPEVHIHRIGRTGRAGEKGL 340
>gi|423421599|ref|ZP_17398688.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
gi|401097261|gb|EJQ05289.1| DEAD-box ATP-dependent RNA helicase CshA [Bacillus cereus BAG3X2-1]
Length = 532
Score = 153 bits (387), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 88/257 (34%), Positives = 147/257 (57%), Gaps = 4/257 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTRKEAVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEML-NMGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y++++E +K L LLD+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 59.7 bits (143), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 35/47 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K +
Sbjct: 293 VLVATDVAARGLDISGVTHVYNFDIPQDPESYVHRIGRTGRAGKKGI 339
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,558,429,569
Number of Sequences: 23463169
Number of extensions: 270652177
Number of successful extensions: 887119
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 27694
Number of HSP's successfully gapped in prelim test: 2129
Number of HSP's that attempted gapping in prelim test: 763106
Number of HSP's gapped (non-prelim): 60555
length of query: 448
length of database: 8,064,228,071
effective HSP length: 146
effective length of query: 302
effective length of database: 8,933,572,693
effective search space: 2697938953286
effective search space used: 2697938953286
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 78 (34.7 bits)