BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy1548
(448 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1XTI|A Chain A, Structure Of Wildtype Human Uap56
Length = 391
Score = 489 bits (1259), Expect = e-138, Method: Compositional matrix adjust.
Identities = 257/414 (62%), Positives = 284/414 (68%), Gaps = 78/414 (18%)
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
SSGFRDFLLKPE+LRAIVDC ++ P + H
Sbjct: 7 SSGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQ---HECI- 39
Query: 139 AGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISK
Sbjct: 40 -----PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 94
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +K
Sbjct: 95 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
HFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 319 DDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQN
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA++IHRGM QEERL +YQ+FKDF
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 388
>pdb|1XTK|A Chain A, Structure Of Decd To Dead Mutation Of Human Uap56
Length = 390
Score = 486 bits (1251), Expect = e-138, Method: Compositional matrix adjust.
Identities = 256/415 (61%), Positives = 283/415 (68%), Gaps = 78/415 (18%)
Query: 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
H SGFRDFLLKPE+LRAIVDC ++ P + H
Sbjct: 5 HMSGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQ---HECI 38
Query: 138 RAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQIS
Sbjct: 39 ------PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 92
Query: 198 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
KEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +
Sbjct: 93 KEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHI 152
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
KHFILDE DKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++
Sbjct: 153 KHFILDEADKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIF 212
Query: 318 VDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
VDDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQ
Sbjct: 213 VDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQ 272
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFH--------------------------------- 404
NFPA++IHRGM QEERL +YQ+FKDF
Sbjct: 273 NFPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDT 332
Query: 405 -------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 333 YLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 387
>pdb|1XTJ|A Chain A, Structure Of Human Uap56 In Complex With Adp
Length = 386
Score = 485 bits (1248), Expect = e-137, Method: Compositional matrix adjust.
Identities = 255/412 (61%), Positives = 282/412 (68%), Gaps = 78/412 (18%)
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
SSGFRDFLLKPE+LRAIVDC F +++ I
Sbjct: 7 SSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHECI------------------- 39
Query: 139 AGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISK
Sbjct: 40 -----PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISK 94
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
EYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +K
Sbjct: 95 EYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIK 154
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
HFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 155 HFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214
Query: 319 DDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378
DDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQN
Sbjct: 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQN 274
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFH---------------------------------- 404
FPA++IHRGM QEERL +YQ+FKDF
Sbjct: 275 FPAIAIHRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTY 334
Query: 405 ------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 335 LHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 386
>pdb|1T6N|A Chain A, Crystal Structure Of The N-Terminal Domain Of Human Uap56
pdb|1T6N|B Chain B, Crystal Structure Of The N-Terminal Domain Of Human Uap56
Length = 220
Score = 338 bits (868), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 171/250 (68%), Positives = 189/250 (75%), Gaps = 32/250 (12%)
Query: 69 EVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPED 128
+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC ++ P +
Sbjct: 3 DVKGSYVSIHSSGFRDFLLKPELLRAIVDC-----------------------GFEHPSE 39
Query: 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188
H +A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCH
Sbjct: 40 VQ---HECI------PQAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 90
Query: 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVR 248
TRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL R
Sbjct: 91 TRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALAR 150
Query: 249 NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308
NK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+K
Sbjct: 151 NKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRK 210
Query: 309 FMHDPMEVYV 318
FM DPME++V
Sbjct: 211 FMQDPMEIFV 220
>pdb|1T5I|A Chain A, Crystal Structure Of The C-Terminal Domain Of Uap56
Length = 172
Score = 162 bits (409), Expect = 5e-40, Method: Compositional matrix adjust.
Identities = 88/168 (52%), Positives = 100/168 (59%), Gaps = 46/168 (27%)
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
+LHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 2 SLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 61
Query: 385 HRGMTQEERLKKYQEFKDFH---------------------------------------- 404
HRGM QEERL +YQ+FKDF
Sbjct: 62 HRGMPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVAR 121
Query: 405 ------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 122 AGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 169
Score = 100 bits (250), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 130
>pdb|3EIQ|A Chain A, Crystal Structure Of Pdcd4-eif4a
pdb|3EIQ|D Chain D, Crystal Structure Of Pdcd4-eif4a
Length = 414
Score = 139 bits (349), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 4/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K YM
Sbjct: 77 GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 136
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D+M
Sbjct: 137 -ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 195
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL G
Sbjct: 196 LSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEG 253
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 254 IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGD 313
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 314 MDQKERDVIMREFRSGSSRVLIT 336
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 332 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 369
>pdb|2ZU6|A Chain A, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|C Chain C, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|D Chain D, Crystal Structure Of The Eif4a-Pdcd4 Complex
pdb|2ZU6|F Chain F, Crystal Structure Of The Eif4a-Pdcd4 Complex
Length = 388
Score = 138 bits (348), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 85/263 (32%), Positives = 136/263 (51%), Gaps = 4/263 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K YM
Sbjct: 51 GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMG 110
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D+M
Sbjct: 111 A-SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 169
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL G
Sbjct: 170 LSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTLEG 227
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 228 IRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGD 287
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 288 MDQKERDVIMREFRSGSSRVLIT 310
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 30/38 (78%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 306 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIG 343
>pdb|2VSO|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSO|B Chain B, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|A Chain A, Crystal Structure Of A Translation Initiation Complex
pdb|2VSX|B Chain B, Crystal Structure Of A Translation Initiation Complex
Length = 395
Score = 138 bits (347), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 101/306 (33%), Positives = 153/306 (50%), Gaps = 22/306 (7%)
Query: 113 DIERVNIVFNYD--MPEDSDTYLHRVARAGRFG----------TKAVL----GMDILCQA 156
DIE I NYD + + D L G FG +A++ G D+L QA
Sbjct: 7 DIEESQIQTNYDKVVYKFDDMELDENLLRGVFGYGFEEPSAIQQRAIMPIIEGHDVLAQA 66
Query: 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF 216
+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M +IKV
Sbjct: 67 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACI 125
Query: 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276
GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+ML +
Sbjct: 126 GGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKE 182
Query: 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXX 336
+ +IF P T QV++ SAT+ ++ V KFM +P+ + V + +LTL G++Q YV
Sbjct: 183 QIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEGIKQFYVNV 241
Query: 337 XXXXXXXX-XXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395
D + Q VIF + + L+T L F +I+ + Q+ER
Sbjct: 242 EEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDT 301
Query: 396 KYQEFK 401
+EF+
Sbjct: 302 IMKEFR 307
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 349
>pdb|2HYI|C Chain C, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|2HYI|I Chain I, Structure Of The Human Exon Junction Complex With A
Trapped Dead-Box Helicase Bound To Rna
pdb|3EX7|C Chain C, The Crystal Structure Of Ejc In Its Transition State
pdb|3EX7|H Chain H, The Crystal Structure Of Ejc In Its Transition State
Length = 413
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K YM
Sbjct: 75 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM- 133
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 134 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 192
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 193 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEG 250
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 251 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 310
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 311 MPQKERESIMKEFR 324
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
>pdb|2J0Q|A Chain A, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0Q|B Chain B, The Crystal Structure Of The Exon Junction Complex At 3.2
A Resolution
pdb|2J0S|A Chain A, The Crystal Structure Of The Exon Junction Complex At 2.2
A Resolution
Length = 410
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K YM
Sbjct: 74 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM- 132
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 133 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 191
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 192 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEG 249
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 250 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 309
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 310 MPQKERESIMKEFR 323
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 328 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 375
>pdb|2XB2|A Chain A, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
pdb|2XB2|X Chain X, Crystal Structure Of The Core Mago-Y14-Eif4aiii-Barentsz-
Upf3b Assembly Shows How The Ejc Is Bridged To The Nmd
Machinery
Length = 411
Score = 137 bits (344), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K YM
Sbjct: 75 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM- 133
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 134 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 192
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 193 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEG 250
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 251 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 310
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 311 MPQKERESIMKEFR 324
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
>pdb|2HXY|A Chain A, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|B Chain B, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|C Chain C, Crystal Structure Of Human Apo-Eif4aiii
pdb|2HXY|D Chain D, Crystal Structure Of Human Apo-Eif4aiii
Length = 391
Score = 136 bits (343), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/254 (33%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K YM
Sbjct: 53 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM- 111
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 112 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 170
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 171 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEG 228
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 229 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 288
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 289 MPQKERESIMKEFR 302
Score = 62.8 bits (151), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 307 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 354
>pdb|2J0U|A Chain A, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 135 bits (341), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 83/254 (32%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA Q+ K YM
Sbjct: 38 GRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYM- 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 97 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL G
Sbjct: 156 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEG 213
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 274 MPQKERESIMKEFR 287
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 292 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 339
>pdb|1S2M|A Chain A, Crystal Structure Of The Dead Box Protein Dhh1p
Length = 400
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 87/256 (33%), Positives = 132/256 (51%), Gaps = 5/256 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA FV+ TL++++ + + L+M TRELA Q S+ K
Sbjct: 55 AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 114
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ I V GG ++ D L I+VGTPGR+L L K +LS FI+DE
Sbjct: 115 H-CGISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 172
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DKML + + + +++I P T Q ++FSAT ++ K +H P E+ + +E LT
Sbjct: 173 DKMLSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LT 229
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +++ + H
Sbjct: 230 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 289
Query: 386 RGMTQEERLKKYQEFK 401
M Q+ER K + EF+
Sbjct: 290 ARMKQQERNKVFHEFR 305
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV ++L RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 310 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 353
>pdb|2J0U|B Chain B, The Crystal Structure Of Eif4aiii-Barentsz Complex At 3.0
A Resolution
Length = 374
Score = 134 bits (338), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 82/254 (32%), Positives = 130/254 (51%), Gaps = 5/254 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA Q+ K YM
Sbjct: 38 GRDVIAQSQSGTGKTATFSVSVLQCLDIQVRETQALILAPTRELAVQVQKGLLALGDYM- 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 97 NVQSHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV++ SATL E+ + KFM DP+ + V + +LTL G
Sbjct: 156 LNK-GFKEQIYDVYRYLPPATQVVLISATLPHEVLEMTNKFMTDPIRILVKRD-ELTLEG 213
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 214 IKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGD 273
Query: 388 MTQEERLKKYQEFK 401
M Q+ER +EF+
Sbjct: 274 MPQKERESIMKEFR 287
Score = 62.8 bits (151), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 292 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 339
>pdb|1FUU|A Chain A, Yeast Initiation Factor 4a
pdb|1FUU|B Chain B, Yeast Initiation Factor 4a
Length = 394
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 85/254 (33%), Positives = 130/254 (51%), Gaps = 6/254 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L + TRELA QI K + +
Sbjct: 58 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALXLAPTRELALQIQKVVXALA-FHX 116
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+
Sbjct: 117 DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKXFILDEADEX 174
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + +IF P T QV++ SAT ++ V KF +P+ + V + +LTL G
Sbjct: 175 LSS-GFKEQIYQIFTLLPPTTQVVLLSATXPNDVLEVTTKFXRNPVRILVKKD-ELTLEG 232
Query: 329 LQQHYVXXXXXXXXXX-XXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV D + Q VIF + + L+T L F +I+
Sbjct: 233 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 292
Query: 388 MTQEERLKKYQEFK 401
+ Q+ER +EF+
Sbjct: 293 LPQQERDTIXKEFR 306
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 311 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 348
>pdb|3BOR|A Chain A, Crystal Structure Of The Deadc Domain Of Human Translation
Initiation Factor 4a-2
Length = 237
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 66/173 (38%), Positives = 97/173 (56%), Gaps = 2/173 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K YM
Sbjct: 67 GYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMG 126
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D+M
Sbjct: 127 A-TCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEADEM 185
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
L + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E
Sbjct: 186 LSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE 237
>pdb|1QDE|A Chain A, Crystal Structure Of The Atpase Domain Of Translation
Initiation Factor 4a From Saccharomyces Cerevisiae-The
Prototype Of The Dead Box Protein Family
Length = 224
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 69/179 (38%), Positives = 104/179 (58%), Gaps = 5/179 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M
Sbjct: 51 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM- 109
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+M
Sbjct: 110 DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 167
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
L + + +IF P T QV++ SAT+ ++ V KFM +P+ + V + +LTL
Sbjct: 168 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLE 224
>pdb|1QVA|A Chain A, Yeast Initiation Factor 4a N-Terminal Domain
Length = 223
Score = 116 bits (291), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 66/170 (38%), Positives = 99/170 (58%), Gaps = 4/170 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M
Sbjct: 58 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM- 116
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+M
Sbjct: 117 DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 174
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
L + + +IF P T QV++ SAT+ ++ V KFM +P+ + V
Sbjct: 175 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223
>pdb|1HV8|A Chain A, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
pdb|1HV8|B Chain B, Crystal Structure Of A Dead Box Protein From The
Hyperthermophile Methanococcus Jannaschii
Length = 367
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/264 (33%), Positives = 138/264 (52%), Gaps = 13/264 (4%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+I+ QA++G GKTA F + L +L ++ + +++ TRELA Q++ E E K N+
Sbjct: 46 NIVAQARTGSGKTASFAIP-LIELVNENNGIEAIILTPTRELAIQVADEIESL-KGNKNL 103
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
K+ +GG I + LK N IVVGTPGRIL + LNL +K+FILDE D+ L
Sbjct: 104 KIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEXL- 160
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+DV++I + K++++FSAT +EI + KK+ D Y +AK+ + ++
Sbjct: 161 NXGFIKDVEKILNACNKDKRILLFSATXPREILNLAKKYXGD----YSFIKAKINAN-IE 215
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q YV EF +V F K+ L++ L + F A +IH ++Q
Sbjct: 216 QSYVEVNENERFEALCRLLKNKEFYGLV-FCKTKRDTKELASXLRDIGFKAGAIHGDLSQ 274
Query: 391 EERLKKYQEFKDFHKGLAITFASD 414
+R K + FK K + I A+D
Sbjct: 275 SQREKVIRLFK--QKKIRILIATD 296
Score = 55.8 bits (133), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 33/47 (70%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
RIL+AT++ RG+D+ +N V NY +P++ ++Y HR+ R GR G K
Sbjct: 290 RILIATDVXSRGIDVNDLNCVINYHLPQNPESYXHRIGRTGRAGKKG 336
>pdb|2OXC|A Chain A, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|2OXC|B Chain B, Human Dead-Box Rna Helicase Ddx20, Dead Domain In Complex
With Adp
pdb|3B7G|A Chain A, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
pdb|3B7G|B Chain B, Human Dead-Box Rna Helicase Ddx20, Conserved Domain I
(Dead) In Complex With Amppnp
(Adenosine-(Beta,Gamma)-Imidotriphosphate)
Length = 230
Score = 110 bits (276), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 62/172 (36%), Positives = 94/172 (54%), Gaps = 2/172 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 61 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 120
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 121 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 178
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
LE+ + + I+ S P +KQ++ SAT + + K+M DP V ++
Sbjct: 179 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNS 230
>pdb|2G9N|A Chain A, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
pdb|2G9N|B Chain B, Structure Of The Dead Domain Of Human Eukaryotic
Initiation Factor 4a, Eif4a
Length = 221
Score = 104 bits (260), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 57/172 (33%), Positives = 90/172 (52%), Gaps = 2/172 (1%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG G TA F ++ LQQ+E LV+ TRELA QI Y
Sbjct: 50 IXGYDVIAQAQSGTGXTATFAISILQQIELDLXATQALVLAPTRELAQQIQXVVMALGDY 109
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ + F+LDE D
Sbjct: 110 MGA-SCHACIGGTNVRAEVQXLQMEAPHIIVGTPGRVFDMLNRRYLSPXYIXMFVLDEAD 168
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+ML + + +IF+ QV++ SAT+ ++ V FM DP+ + V
Sbjct: 169 EMLSR-GFXDQIYDIFQXLNSNTQVVLLSATMPSDVLEVTXXFMRDPIRILV 219
>pdb|3BER|A Chain A, Human Dead-Box Rna-Helicase Ddx47, Conserved Domain I In
Complex With Amp
Length = 249
Score = 102 bits (255), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 56/174 (32%), Positives = 99/174 (56%), Gaps = 4/174 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 77 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 136
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P I++ TPGR++ + N K NL LK+ ++DE
Sbjct: 137 SI-GVQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 194
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V
Sbjct: 195 ADRIL-NMDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAV 247
>pdb|2DB3|A Chain A, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|B Chain B, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|C Chain C, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
pdb|2DB3|D Chain D, Structural Basis For Rna Unwinding By The Dead-Box Protein
Drosophila Vasa
Length = 434
Score = 102 bits (254), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 88/321 (27%), Positives = 154/321 (47%), Gaps = 44/321 (13%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-----ETTDSNVYVLVMCHTRELAFQISKEYERF 203
G D++ A++G GKTA F+L L +L E V+++ TRELA QI E +F
Sbjct: 93 GRDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKF 152
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
+ + S +K+G+ +GG + E + T +V+ TPGR+L V + + +LD
Sbjct: 153 A-FESYLKIGIVYGGTSFRHQNECI-TRGCHVVIATPGRLLDFVDRTFITFEDTRFVVLD 210
Query: 264 ECDKMLE---QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD- 319
E D+ML+ +MRR + + H Q +MFSAT +EI+ + +F+ + + V +
Sbjct: 211 EADRMLDMGFSEDMRRIMTHVTMRPEH--QTLMFSATFPEEIQRMAGEFLKNYVFVAIGI 268
Query: 320 -----DEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVL--EFNQVVIFVKSVTRCIALST 372
+ K T++ + ++ ++L + + ++FV++ L++
Sbjct: 269 VGGACSDVKQTIYEVNKY----------AKRSKLIEILSEQADGTIVFVETKRGADFLAS 318
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKG-----LAITFASDENDAKILNNVQDR 427
LSE+ FP SIH Q +R Q +DF G +A + AS D K + +V +
Sbjct: 319 FLSEKEFPTTSIHGDRLQSQR---EQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINY 375
Query: 428 FDVSISELPDEIDLSTYIEGR 448
++P +ID + GR
Sbjct: 376 ------DMPSKIDDYVHRIGR 390
Score = 54.7 bits (130), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
++L+AT++ RG+DI+ + V NYDMP D Y+HR+ R GR G
Sbjct: 351 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNG 398
>pdb|2GXQ|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 1
pdb|2GXS|A Chain A, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXS|B Chain B, Hera N-Terminal Domain In Complex With Amp, Crystal Form 2
pdb|2GXU|A Chain A, Hera N-Terminal Domain In Complex With Orthophosphate,
Crystal Form 1
Length = 207
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 40/240 (16%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F+DF LKPEIL A L GRG+ + T + A
Sbjct: 3 FKDFPLKPEILEA------------LHGRGLT---------------TPTPIQAAAL--- 32
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISK 198
A+ G D++ QA++G GKT F L ++L + LV+ TRELA Q++
Sbjct: 33 --PLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
E + ++KV +GG K +E L VV TPGR L +R L+LS ++
Sbjct: 91 E---LTAVAPHLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQGVLDLSRVE 146
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+LDE D+ML + +V+ + ++P ++Q ++FSATL + + +++M +P+ + V
Sbjct: 147 VAVLDEADEML-SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|3MWJ|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWJ|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Apo Form
pdb|3MWK|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWK|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain, Complex
With 8-Oxo- Amp
pdb|3MWL|A Chain A, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3MWL|B Chain B, Q28e Mutant Of Hera N-Terminal Reca-Like Domain In Complex
With 8- Oxoadenosine
pdb|3NBF|A Chain A, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|B Chain B, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|C Chain C, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NBF|D Chain D, Q28e Mutant Of Hera Helicase N-Terminal Domain Bound To
8-Oxo-Adp
pdb|3NEJ|A Chain A, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
pdb|3NEJ|B Chain B, Q28e Mutant Of Hera Rna Helicase N-Terminal Domain -
Perfectly Twinned Hexagonal Form
Length = 207
Score = 99.0 bits (245), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 40/240 (16%)
Query: 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141
F+DF LKPEIL A L GRG+ + T + A
Sbjct: 3 FKDFPLKPEILEA------------LHGRGLT---------------TPTPIEAAAL--- 32
Query: 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISK 198
A+ G D++ QA++G GKT F L ++L + LV+ TRELA Q++
Sbjct: 33 --PLALEGKDLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVAS 90
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
E + ++KV +GG K +E L VV TPGR L +R L+LS ++
Sbjct: 91 E---LTAVAPHLKVVAVYGGTGYGKQKEAL-LRGADAVVATPGRALDYLRQGVLDLSRVE 146
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+LDE D+ML + +V+ + ++P ++Q ++FSATL + + +++M +P+ + V
Sbjct: 147 VAVLDEADEML-SMGFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLINV 205
>pdb|1VEC|A Chain A, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
pdb|1VEC|B Chain B, Crystal Structure Of The N-Terminal Domain Of RckP54, A
Human Dead-Box Protein
Length = 206
Score = 95.9 bits (237), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 53/171 (30%), Positives = 96/171 (56%), Gaps = 2/171 (1%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 37 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 96
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 97 HMGGAKVMATTGGTNLRDDIMRLD-DTVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 155
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
DK+L Q + + +++I + P +Q++++SAT ++ + P E+
Sbjct: 156 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>pdb|3PEW|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Rna And Adp Bef3
pdb|3RRM|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Nup159, Gle1 H337r, Ip6
And Adp
pdb|3RRN|A Chain A, S. Cerevisiae Dbp5 L327v Bound To Gle1 H337r And Ip6
Length = 395
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/264 (26%), Positives = 123/264 (46%), Gaps = 14/264 (5%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ---ISKEYERFSKYM 207
+++ Q++SG GKTA F L L ++ D++ + + +RELA Q + +E +F+K
Sbjct: 46 NMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
S + V F E K N Q++VGTPG +L L+R K + L +K F+LDE D
Sbjct: 106 SQLIVPDSF---------EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+Q + + R P Q+++FSAT + +R KK + + + + ++ +
Sbjct: 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTLELQTN-EVNVD 215
Query: 328 GLQQHYVX-XXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
++Q Y+ V+ +IFV + L L + +H
Sbjct: 216 AIKQLYMDCKNEADKFDVLTELYGVMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHG 275
Query: 387 GMTQEERLKKYQEFKDFHKGLAIT 410
+ +ER + +F++ + IT
Sbjct: 276 DLQTQERDRLIDDFREGRSKVLIT 299
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+DI V++V NYD+P D TY+HR+ R GRFG K V
Sbjct: 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
Score = 33.9 bits (76), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF- 428
L TL + Q PA IHR + + F KG+AI+F D+N IL+ +Q F
Sbjct: 320 LPTLANGQADPATYIHR-------IGRTGRFG--RKGVAISFVHDKNSFNILSAIQKYFG 370
Query: 429 DVSISELPDE 438
D+ ++ +P +
Sbjct: 371 DIEMTRVPTD 380
>pdb|3PEY|A Chain A, S. Cerevisiae Dbp5 Bound To Rna And Adp Bef3
Length = 395
Score = 90.9 bits (224), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ---ISKEYERFSKYM 207
+++ Q++SG GKTA F L L ++ D++ + + +RELA Q + +E +F+K
Sbjct: 46 NMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 105
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
S + V F E K N Q++VGTPG +L L+R K + L +K F+LDE D
Sbjct: 106 SQLIVPDSF---------EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 156
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
ML+Q + + R P Q+++FSAT + +R KK + +
Sbjct: 157 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN 201
Score = 59.7 bits (143), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+DI V++V NYD+P D TY+HR+ R GRFG K V
Sbjct: 295 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 348
Score = 33.5 bits (75), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 10/70 (14%)
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF- 428
L TL + Q PA IHR + + F KG+AI+F D+N IL+ +Q F
Sbjct: 320 LPTLANGQADPATYIHR-------IGRTGRFG--RKGVAISFVHDKNSFNILSAIQKYFG 370
Query: 429 DVSISELPDE 438
D+ ++ +P +
Sbjct: 371 DIEMTRVPTD 380
>pdb|2KBE|A Chain A, Solution Structure Of Amino-Terminal Domain Of Dbp5p
Length = 226
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ---ISKEYERFSKYM 207
+++ Q++SG GKTA F L L ++ D++ + + +RELA Q + +E +F+K
Sbjct: 63 NMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKIT 122
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
S + V F E K N Q++VGTPG +L L+R K + L +K F+LDE D
Sbjct: 123 SQLIVPDSF---------EKNKQINAQVIVGTPGTVLDLMRRKLMQLQKIKIFVLDEADN 173
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
ML+Q + + R P Q+++FSAT + +R KK + +
Sbjct: 174 MLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPN 218
>pdb|2I4I|A Chain A, Crystal Structure Of Human Dead-Box Rna Helicase Ddx3x
Length = 417
Score = 90.1 bits (222), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 69/272 (25%), Positives = 126/272 (46%), Gaps = 23/272 (8%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYV------------------LVMCHTREL 192
D++ A++G GKTA F+L L Q+ + + LV+ TREL
Sbjct: 54 DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTREL 113
Query: 193 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL 252
A QI +E +FS Y S ++ V +GG I + L+ ++V TPGR++ ++ K+
Sbjct: 114 AVQIYEEARKFS-YRSRVRPCVVYGGADIGQQIRDLE-RGCHLLVATPGRLVDMMERGKI 171
Query: 253 NLSLLKHFILDECDKMLE---QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
L K+ +LDE D+ML+ + ++RR V++ + MMFSAT KEI+ + + F
Sbjct: 172 GLDFCKYLVLDEADRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQMLARDF 231
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIA 369
+ + + + V + + Q+ + + ++FV++ +
Sbjct: 232 LDEYIFLAVGRVGSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADS 291
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
L L + + SIH +Q +R + +F+
Sbjct: 292 LEDFLYHEGYACTSIHGDRSQRDREEALHQFR 323
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
ILVAT + RG+DI V V N+D+P D + Y+HR+ R GR G
Sbjct: 329 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 372
>pdb|3FMP|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
pdb|3FMP|D Chain D, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 479
Score = 89.4 bits (220), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 193 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ I R P Q+++FSAT + +K + DP + + E + TL +
Sbjct: 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTI 307
Query: 330 QQHYVXXXXXXXX-XXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+Q+YV + Q +IF + L+ LS++ + M
Sbjct: 308 KQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 367
Query: 389 TQEERLKKYQEFKDFHKGLAIT 410
E+R + F++ + + +T
Sbjct: 368 MVEQRAAVIERFREGKEKVLVT 389
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSD------TYLHRVARAGRFGTKAV 147
++LV TN+ RG+D+E+V++V N+D+P D D TYLHR+ R GRFG + +
Sbjct: 385 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 438
>pdb|3FHO|A Chain A, Structure Of S. Pombe Dbp5
pdb|3FHO|B Chain B, Structure Of S. Pombe Dbp5
Length = 508
Score = 89.0 bits (219), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 55/184 (29%), Positives = 98/184 (53%), Gaps = 7/184 (3%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA F L L +++ + + + +RELA QI KY
Sbjct: 160 NMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKY---T 216
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
+V FG I+ + QIV+GTPG ++ L++ ++L+ +K F+LDE D ML+
Sbjct: 217 EVKTAFG---IKDSVPKGAKIDAQIVIGTPGTVMDLMKRRQLDARDIKVFVLDEADNMLD 273
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
Q + I P Q+++FSAT S+ + ++F + E+ + E +L++ G++
Sbjct: 274 QQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLKTE-ELSVEGIK 332
Query: 331 QHYV 334
Q Y+
Sbjct: 333 QLYM 336
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 11/65 (16%)
Query: 94 AIVDCWRI-----LVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRF 142
AI+D +R+ LV TN+ RG+D+ +VN+V NYDMP D TYLHR+ R GRF
Sbjct: 398 AIMDSFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRF 457
Query: 143 GTKAV 147
G V
Sbjct: 458 GRVGV 462
>pdb|3G0H|A Chain A, Human Dead-box Rna Helicase Ddx19, In Complex With An
Atp-analogue And Rna
Length = 424
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 82 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 141
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 142 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 197
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ I R P Q+++FSAT + +K + DP + + E + TL +
Sbjct: 198 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTI 256
Query: 330 QQHYVXXXXXXXX-XXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+Q+YV + Q +IF + L+ LS++ + M
Sbjct: 257 KQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 316
Query: 389 TQEERLKKYQEFKDFHKGLAIT 410
E+R + F++ + + +T
Sbjct: 317 MVEQRAAVIERFREGKEKVLVT 338
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSD------TYLHRVARAGRFGTKAV 147
++LV TN+ RG+D+E+V++V N+D+P D D TYLHR+ R GRFG + +
Sbjct: 334 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 387
>pdb|3FHT|A Chain A, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
pdb|3FHT|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Amppnp And
Rna
Length = 412
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 126 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ I R P Q+++FSAT + +K + DP + + E + TL +
Sbjct: 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTI 240
Query: 330 QQHYVXXXXXXXX-XXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+Q+YV + Q +IF + L+ LS++ + M
Sbjct: 241 KQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 300
Query: 389 TQEERLKKYQEFKDFHKGLAIT 410
E+R + F++ + + +T
Sbjct: 301 MVEQRAAVIERFREGKEKVLVT 322
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSD------TYLHRVARAGRFGTKAV 147
++LV TN+ RG+D+E+V++V N+D+P D D TYLHR+ R GRFG + +
Sbjct: 318 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 371
>pdb|3EWS|A Chain A, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
pdb|3EWS|B Chain B, Human Dead-Box Rna-Helicase Ddx19 In Complex With Adp
Length = 445
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 69/262 (26%), Positives = 121/262 (46%), Gaps = 7/262 (2%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 103 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 162
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 163 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 218
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ I R P Q+++FSAT + +K + DP + + E + TL +
Sbjct: 219 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNVIKLKREEE-TLDTI 277
Query: 330 QQHYVXXXXXXXX-XXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+Q+YV + Q +IF + L+ LS++ + M
Sbjct: 278 KQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEM 337
Query: 389 TQEERLKKYQEFKDFHKGLAIT 410
E+R + F++ + + +T
Sbjct: 338 MVEQRAAVIERFREGKEKVLVT 359
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 38/54 (70%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSD------TYLHRVARAGRFGTKAV 147
++LV TN+ RG+D+E+V++V N+D+P D D TYLHR+ R GRFG + +
Sbjct: 355 KVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGL 408
>pdb|2Z0M|A Chain A, Crystal Structure Of Hypothetical Atp-Dependent Rna
Helicase From Sulfolobus Tokodaii
Length = 337
Score = 89.0 bits (219), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 83/299 (27%), Positives = 138/299 (46%), Gaps = 30/299 (10%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G +++ +AK+G GKTA + + L+ + LV+ TREL Q++ +YM
Sbjct: 31 GKNVVVRAKTGSGKTAAYAIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYM- 83
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ KV +GG+P + + + N IVV TPGR+L L ++LS + I+DE D M
Sbjct: 84 DTKVAEVYGGMPYKA--QINRVRNADIVVATPGRLLDLWSKGVIDLSSFEIVIIDEADLM 141
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
E + D++ I + + K +FSAT+ +EIR V K F+ + Y + EA + L
Sbjct: 142 FE-MGFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITN----YEEIEACIGLAN 196
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++ +V + + V++FV++ R L L A+ + +
Sbjct: 197 VEHKFVHVKDDWRSKVQALREN--KDKGVIVFVRTRNRVAKLVRLFDN----AIELRGDL 250
Query: 389 TQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
Q R + F++ + IT AS D ++ V + FD P DL TYI
Sbjct: 251 PQSVRNRNIDAFREGEYDMLITTDVASRGLDIPLVEKVIN-FDA-----PQ--DLRTYI 301
Score = 52.0 bits (123), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 5/56 (8%)
Query: 96 VDCWR-----ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+D +R +L+ T++ RG+DI V V N+D P+D TY+HR+ R GR G K
Sbjct: 259 IDAFREGEYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRMGRKG 314
>pdb|1WRB|A Chain A, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
pdb|1WRB|B Chain B, Crystal Structure Of The N-Terminal Reca-Like Domain Of
Djvlgb, A Pranarian Vasa-Like Rna Helicase
Length = 253
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/225 (29%), Positives = 113/225 (50%), Gaps = 27/225 (12%)
Query: 111 GMDIERVNIVFNYDMPEDSDTYLHRVARAG--------RFGTKAVL-GMDILCQAKSGMG 161
G D N++ N+D + T + + A + A+L DI+ A++G G
Sbjct: 13 GPDYSATNVIENFDELKLDPTIRNNILLASYQRPTPIQKNAIPAILEHRDIMACAQTGSG 72
Query: 162 KTAVFVLATLQQLETTDSN-------VY--VLVMCHTRELAFQISKEYERFSKYMSNIKV 212
KTA F++ + L D N Y L++ TRELA QI E ++FS + ++
Sbjct: 73 KTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFS-LNTPLRS 131
Query: 213 GVFFGGLPI--QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
V +GG Q E + H ++V TPGR++ + K++L K+ +LDE D+ML+
Sbjct: 132 CVVYGGADTHSQIREVQMGCH---LLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLD 188
Query: 271 ---QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
+ ++R+ ++E S +Q +MFSAT KEI+ + F+++
Sbjct: 189 MGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYN 233
>pdb|1Q0U|A Chain A, Crystal Structure Of The Bstdead N-Terminal Domain
pdb|1Q0U|B Chain B, Crystal Structure Of The Bstdead N-Terminal Domain
Length = 219
Score = 87.0 bits (214), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/176 (31%), Positives = 91/176 (51%), Gaps = 5/176 (2%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G + Q+++G GKT ++L ++++ + V ++ TRELA QI E + +K
Sbjct: 38 ALRGESXVGQSQTGTGKTHAYLLPIXEKIKPERAEVQAVITAPTRELATQIYHETLKITK 97
Query: 206 YMSN---IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
+ I GG QK E L P IV+GTPGRI +R + L++ ++
Sbjct: 98 FCPKDRXIVARCLIGGTDKQKALEKLNV-QPHIVIGTPGRINDFIREQALDVHTAHILVV 156
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
DE D L+ DV +I P Q ++FSAT+ ++++P KK+ +P V+V
Sbjct: 157 DEADLXLDX-GFITDVDQIAARXPKDLQXLVFSATIPEKLKPFLKKYXENPTFVHV 211
>pdb|3FMO|B Chain B, Crystal Structure Of The Nucleoporin Nup214 In Complex
With The Dead- Box Helicase Ddx19
Length = 300
Score = 82.8 bits (203), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 133 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 192
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 193 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 248
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
+ I R P Q+++FSAT + +K + DP
Sbjct: 249 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 292
>pdb|3FHC|B Chain B, Crystal Structure Of Human Dbp5 In Complex With Nup214
Length = 235
Score = 82.0 bits (201), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 52/164 (31%), Positives = 84/164 (51%), Gaps = 5/164 (3%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
+++ Q++SG GKTA FVLA L Q+E + L + T ELA Q K E+ K+ +
Sbjct: 66 NLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPEL 125
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
K+ G +++ ++ + QIV+GTPG +L K ++ +K F+LDE D M+
Sbjct: 126 KLAYAVRGNKLERGQKI----SEQIVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMI 181
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313
+ I R P Q+++FSAT + +K + DP
Sbjct: 182 ATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225
>pdb|2PL3|A Chain A, Human Dead-Box Rna Helicase Ddx10, Dead Domain In Complex
With Adp
Length = 236
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 52/182 (28%), Positives = 99/182 (54%), Gaps = 9/182 (4%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQL----ETTDSNVYVLVMCHTRELAFQISKEYE 201
A+ G D+L AK+G GKT F++ L+ L T+ + VL++ TRELA+Q +
Sbjct: 59 ALQGKDVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLR 118
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA-LVRNKKLNLSLLKHF 260
+ K + G+ GG ++ + E + +N I+V TPGR+L + + + L+
Sbjct: 119 KVGKN-HDFSAGLIIGGKDLKHEAE--RINNINILVCTPGRLLQHMDETVSFHATDLQML 175
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D++L+ + + + + P +Q ++FSAT +K ++ + + + +P V+V +
Sbjct: 176 VLDEADRILD-MGFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNPEYVWVHE 234
Query: 321 EA 322
+A
Sbjct: 235 KA 236
>pdb|3IUY|A Chain A, Crystal Structure Of Ddx53 Dead-Box Domain
pdb|3IUY|B Chain B, Crystal Structure Of Ddx53 Dead-Box Domain
Length = 228
Score = 76.6 bits (187), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 89/176 (50%), Gaps = 10/176 (5%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLVMCHTRELAFQISKEYER 202
G+D++ A++G GKT +++ L++ + +LV+ TRELA + E +
Sbjct: 57 GIDLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSK 116
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
+S +K +GG E + + I++ TPGR+ L N +NL + + ++
Sbjct: 117 YS--YKGLKSICIYGGRNRNGQIEDI-SKGVDIIIATPGRLNDLQMNNSVNLRSITYLVI 173
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
DE DKML+ +E +++I +Q +M SAT +R + ++ DPM VYV
Sbjct: 174 DEADKMLD-MEFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLALSYLKDPMIVYV 228
>pdb|4A4D|A Chain A, Crystal Structure Of The N-Terminal Domain Of The Human
Dead-Box Rna Helicase Ddx5 (P68)
Length = 253
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 52/176 (29%), Positives = 91/176 (51%), Gaps = 16/176 (9%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQ------LETTDSNVYVLVMCHTRELAFQISKE 199
A+ G+D++ A++G GKT ++L + LE D + LV+ TRELA Q+ +
Sbjct: 77 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQQV 135
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ + +K +GG P L+ +I + TPGR++ + K NL +
Sbjct: 136 AAEYCR-ACRLKSTCIYGGAPKGPQIRDLE-RGVEICIATPGRLIDFLECGKTNLRRTTY 193
Query: 260 FILDECDKMLE---QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
+LDE D+ML+ + ++R+ V +I +Q +M+SAT KE+R + + F+ D
Sbjct: 194 LVLDEADRMLDMGFEPQIRKIVDQIRPD----RQTLMWSATWPKEVRQLAEDFLKD 245
>pdb|3FE2|A Chain A, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
pdb|3FE2|B Chain B, Human Dead-Box Rna Helicase Ddx5 (P68), Conserved Domain I
In Complex With Adp
Length = 242
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/173 (28%), Positives = 88/173 (50%), Gaps = 10/173 (5%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQ------LETTDSNVYVLVMCHTRELAFQISKE 199
A+ G+D++ A++G GKT ++L + LE D + LV+ TRELA Q+ +
Sbjct: 63 ALSGLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPI-CLVLAPTRELAQQVQQV 121
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ + +K +GG P L+ +I + TPGR++ + K NL +
Sbjct: 122 AAEYCR-ACRLKSTCIYGGAPKGPQIRDLE-RGVEICIATPGRLIDFLECGKTNLRRTTY 179
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
+LDE D+ML+ + +++I +Q +M+SAT KE+R + + F+ D
Sbjct: 180 LVLDEADRMLD-MGFEPQIRKIVDQIRPDRQTLMWSATWPKEVRQLAEDFLKD 231
>pdb|3SQW|A Chain A, Structure Of Mss116p (Nte Deletion) Bound To Ssrna And
Amp-Pnp
Length = 579
Score = 64.7 bits (156), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 28/286 (9%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETT--DSN--VYVLVMCHTRELAFQISKEYERFSKY 206
D++ +AK+G GKT F++ Q L T DS V +++ TR+LA QI E ++
Sbjct: 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121
Query: 207 MSNIKVGV---FFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFIL 262
+K GG + + P IV+ TPGR++ L + + + +L
Sbjct: 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181
Query: 263 DECDKMLEQLEMRRDVQEIF-------RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
DE D++LE + R D++ I S + ++FSATL +++ + M+
Sbjct: 182 DEADRLLE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 316 VYVD--DEAKLTLHG-------LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
+++D D+ + H + + + + + +IF +V
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 367 CIALSTLLS---EQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
L ++L +++ P + H +TQ +R + FK G+ +
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILV T++ RGMD V+ V +P + Y+HR+ R R G
Sbjct: 344 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 386
>pdb|3I5X|A Chain A, Structure Of Mss116p Bound To Ssrna And Amp-Pnp
pdb|3I5Y|A Chain A, Structure Of Mss116p Bound To Ssrna Containing A Single
5-Bru And Amp- Pnp
pdb|3I61|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-beryllium
Fluoride
pdb|3I62|A Chain A, Structure Of Mss116p Bound To Ssrna And Adp-aluminum
Fluoride
Length = 563
Score = 64.3 bits (155), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 28/286 (9%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETT--DSN--VYVLVMCHTRELAFQISKEYERFSKY 206
D++ +AK+G GKT F++ Q L T DS V +++ TR+LA QI E ++
Sbjct: 113 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 172
Query: 207 MSNIKVGV---FFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFIL 262
+K GG + + P IV+ TPGR++ L + + + +L
Sbjct: 173 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 232
Query: 263 DECDKMLEQLEMRRDVQEIF-------RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
DE D++LE + R D++ I S + ++FSATL +++ + M+
Sbjct: 233 DEADRLLE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKEC 291
Query: 316 VYVD--DEAKLTLHG-------LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
+++D D+ + H + + + + + +IF +V
Sbjct: 292 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 351
Query: 367 CIALSTLLS---EQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
L ++L +++ P + H +TQ +R + FK G+ +
Sbjct: 352 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 397
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILV T++ RGMD V+ V +P + Y+HR+ R R G
Sbjct: 395 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 437
>pdb|2WAX|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAX|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|A Chain A, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
pdb|2WAY|C Chain C, Structure Of The Human Ddx6 C-Terminal Domain In Complex
With An Edc3-Fdf Peptide
Length = 193
Score = 63.9 bits (154), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 40/53 (75%), Gaps = 3/53 (5%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG LG+ I
Sbjct: 96 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFGH---LGLAI 145
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 42/97 (43%), Gaps = 5/97 (5%)
Query: 312 DPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALS 371
DP E+ + +E LTL G+ Q+Y L+ NQ +IF S R L+
Sbjct: 4 DPYEINLMEE--LTLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLA 61
Query: 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLA 408
+S+ + IH M QE R + F DF GL
Sbjct: 62 KKISQLGYSCFYIHAKMRQEHRNRV---FHDFRNGLC 95
>pdb|3SQX|A Chain A, Structure Of Mss116p (Nte And C-Tail Double Deletion)
Bound To Ssrna And Amp-Pnp
Length = 512
Score = 63.9 bits (154), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 64/286 (22%), Positives = 122/286 (42%), Gaps = 28/286 (9%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETT--DSN--VYVLVMCHTRELAFQISKEYERFSKY 206
D++ +AK+G GKT F++ Q L T DS V +++ TR+LA QI E ++
Sbjct: 62 DVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDM 121
Query: 207 MSNIKVGV---FFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFIL 262
+K GG + + P IV+ TPGR++ L + + + +L
Sbjct: 122 NYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLEKYSNKFFRFVDYKVL 181
Query: 263 DECDKMLEQLEMRRDVQEIF-------RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
DE D++LE + R D++ I S + ++FSATL +++ + M+
Sbjct: 182 DEADRLLE-IGFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANNIMNKKEC 240
Query: 316 VYVD--DEAKLTLHG-------LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
+++D D+ + H + + + + + +IF +V
Sbjct: 241 LFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKF 300
Query: 367 CIALSTLLS---EQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
L ++L +++ P + H +TQ +R + FK G+ +
Sbjct: 301 TSFLCSILKNEFKKDLPILEFHGKITQNKRTSLVKRFKKDESGILV 346
Score = 39.3 bits (90), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILV T++ RGMD V+ V +P + Y+HR+ R R G
Sbjct: 344 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 386
>pdb|3DKP|A Chain A, Human Dead-Box Rna-Helicase Ddx52, Conserved Domain I In
Complex With Adp
Length = 245
Score = 61.6 bits (148), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 50/171 (29%), Positives = 83/171 (48%), Gaps = 19/171 (11%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-ETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
G ++L A +G GKT F + L QL + + L++ TRELA QI +E + S+
Sbjct: 66 GRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISE-- 123
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQ------IVVGTPGRILALVRNKK--LNLSLLKH 259
G F I K K P+ I+V TP R++ L++ ++L+ ++
Sbjct: 124 -----GTGFRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEW 178
Query: 260 FILDECDKMLE--QLEMRRDVQEIFRS-SPHTKQVMMFSATLSKEIRPVCK 307
++DE DK+ E + R + IF + + H + MFSAT + ++ CK
Sbjct: 179 LVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAYDVEQWCK 229
>pdb|3LY5|A Chain A, Ddx18 Dead-Domain
pdb|3LY5|B Chain B, Ddx18 Dead-Domain
Length = 262
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 85/165 (51%), Gaps = 10/165 (6%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQ---QLETTDSN-VYVLVMCHTRELAFQISKEYERFS 204
G D+L AK+G GKT F++ ++ +L N VL++ TRELA Q +
Sbjct: 91 GRDLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELM 150
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKK-LNLSLLKHFIL 262
+ + G+ GG + E K N I+V TPGR+L ++N L+ ++
Sbjct: 151 THHVH-TYGLIMGG--SNRSAEAQKLGNGINIIVATPGRLLDHMQNTPGFMYKNLQCLVI 207
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307
DE D++L+ + ++++I + P +Q M+FSAT ++++ + +
Sbjct: 208 DEADRILD-VGFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLAR 251
>pdb|2HJV|A Chain A, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
pdb|2HJV|B Chain B, Structure Of The Second Domain (Residues 207-368) Of The
Bacillus Subtilis Yxin Protein
Length = 163
Score = 59.3 bits (142), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 35/48 (72%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+R LVAT++ RG+DIE +++V NYD+P + ++Y+HR R GR G K
Sbjct: 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKG 133
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 355 NQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401
+ +IF ++ L+ L + +P IH GM QE+R EFK
Sbjct: 36 DSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFK 82
>pdb|2YJT|D Chain D, Crystal Structure Of E. Coli Dead-Box Protein Srmb Bound
To Regulator Of Ribonuclease Activity A (Rraa)
Length = 170
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 28/47 (59%), Positives = 35/47 (74%), Gaps = 3/47 (6%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGT 144
+LVAT++ RG+DI V+ VFN+DMP DTYLHR+ ARAGR GT
Sbjct: 83 VLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTARAGRKGT 129
>pdb|2RB4|A Chain A, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
pdb|2RB4|B Chain B, Crystal Structure Of The Helicase Domain Of Human Ddx25
Rna Helicase
Length = 175
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+D+++V IV N+D+P D +TYLHR+ R GRFG K +
Sbjct: 86 KVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGL 139
>pdb|2KBF|A Chain A, Solution Structure Of Carboxyl-Terminal Domain Of Dbp5p
Length = 187
Score = 58.2 bits (139), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+DI V++V NYD+P D TY+HR+ R GRFG K V
Sbjct: 87 KVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 140
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 36/68 (52%), Gaps = 10/68 (14%)
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF- 428
L TL + Q PA IHR + + R + KG+AI+F D+N IL+ +Q F
Sbjct: 112 LPTLANGQADPATYIHR-IGRTGRFGR--------KGVAISFVHDKNSFNILSAIQKYFG 162
Query: 429 DVSISELP 436
D+ ++ +P
Sbjct: 163 DIEMTRVP 170
>pdb|3GFP|A Chain A, Structure Of The C-Terminal Domain Of The Dead-Box Protein
Dbp5
Length = 189
Score = 57.4 bits (137), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+DI V+ V NYD+P D TY+HR+ R GRFG K V
Sbjct: 89 KVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 142
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF- 428
L TL + Q PA IHR + + R + KG+AI+F D+N IL+ +Q F
Sbjct: 114 LPTLANGQADPATYIHR-IGRTGRFGR--------KGVAISFVHDKNSFNILSAIQKYFG 164
Query: 429 DVSISELP 436
D+ + +P
Sbjct: 165 DIEXTRVP 172
>pdb|3PEU|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
H337r And Ip6
pdb|3PEV|A Chain A, S. Cerevisiae Dbp5 L327v C-Terminal Domain Bound To Gle1
And Ip6
Length = 188
Score = 57.4 bits (137), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 34/54 (62%), Gaps = 6/54 (11%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+DI V+ V NYD+P D TY+HR+ R GRFG K V
Sbjct: 88 KVLITTNVLARGIDIPTVSXVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGV 141
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 35/68 (51%), Gaps = 10/68 (14%)
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF- 428
L TL + Q PA IHR + + R + KG+AI+F D+N IL+ +Q F
Sbjct: 113 LPTLANGQADPATYIHR-IGRTGRFGR--------KGVAISFVHDKNSFNILSAIQKYFG 163
Query: 429 DVSISELP 436
D+ + +P
Sbjct: 164 DIEXTRVP 171
>pdb|2JGN|A Chain A, Ddx3 Helicase Domain
pdb|2JGN|B Chain B, Ddx3 Helicase Domain
pdb|2JGN|C Chain C, Ddx3 Helicase Domain
Length = 185
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144
ILVAT + RG+DI V V N+D+P D + Y+HR+ R GR G
Sbjct: 99 ILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGN 142
>pdb|2P6N|A Chain A, Human Dead-box Rna Helicase Ddx41, Helicase Domain
pdb|2P6N|B Chain B, Human Dead-box Rna Helicase Ddx41, Helicase Domain
Length = 191
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 30/47 (63%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ +G+D + V NYDMPE+ + Y+HR+ R G G +
Sbjct: 107 VLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGI 153
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKG--LAITFASD 414
V+IF + A+ L + AV+IH G QEER K + F++ K +A AS
Sbjct: 57 VLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREGKKDVLVATDVASK 116
Query: 415 ENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
D + +V + ++P+EI+ + GR
Sbjct: 117 GLDFPAIQHVINY------DMPEEIENYVHRIGR 144
>pdb|1FUK|A Chain A, Crystal Structure Of The Carboxy Terminal Domain Of Yeast
Eif4a
Length = 165
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 31/38 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVA 137
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+
Sbjct: 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIG 119
>pdb|3I32|A Chain A, Dimeric Structure Of A Hera Helicase Fragment Including
The C-Terminal Reca Domain, The Dimerization Domain, And
The Rna Binding Domain
Length = 300
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 27/35 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 134
R+LVAT++ RG+DI +V++V +Y MP+ ++ Y H
Sbjct: 80 RVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQH 114
>pdb|3EAQ|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAQ|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase Hera
Form 2, Complete Dimer, Symmetric
pdb|3EAR|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAR|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Partial Dimer
pdb|3EAS|A Chain A, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
pdb|3EAS|B Chain B, Novel Dimerization Motif In The Dead Box Rna Helicase
Hera: Form 1, Complete Dimer, Asymmetric
Length = 212
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 27/35 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLH 134
R+LVAT++ RG+DI +V++V +Y +P+ ++ Y H
Sbjct: 83 RVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQH 117
>pdb|1OYW|A Chain A, Structure Of The Recq Catalytic Core
Length = 523
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
D +I+VAT FG G++ V V ++D+P + ++Y RAGR G A
Sbjct: 285 DDLQIVVATVAFGXGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334
>pdb|1OYY|A Chain A, Structure Of The Recq Catalytic Core Bound To Atp-Gamma-S
Length = 523
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/50 (38%), Positives = 29/50 (58%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
D +I+VAT FG G++ V V ++D+P + ++Y RAGR G A
Sbjct: 285 DDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDGLPA 334
>pdb|4DB4|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
pdb|4DB4|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To A Chimaeric
Rna-Dna Duplex
Length = 256
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILV T++ RGMD V+ V +P + Y+HR+ R R G
Sbjct: 89 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 131
>pdb|4DB2|C Chain C, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|D Chain D, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILV T++ RGMD V+ V +P + Y+HR+ R R G
Sbjct: 89 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 131
>pdb|4DB2|A Chain A, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
pdb|4DB2|B Chain B, Mss116p Dead-Box Helicase Domain 2 Bound To An Rna Duplex
Length = 257
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 25/46 (54%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
ILV T++ RGMD V+ V +P + Y+HR+ R R G +
Sbjct: 89 ILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSGKEG 134
>pdb|2V1X|A Chain A, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2V1X|B Chain B, Crystal Structure Of Human Recq-Like Dna Helicase
pdb|2WWY|A Chain A, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
pdb|2WWY|B Chain B, Structure Of Human Recq-Like Helicase In Complex With A
Dna Substrate
Length = 591
Score = 35.4 bits (80), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 36/77 (46%), Gaps = 6/77 (7%)
Query: 75 VSIHSSGFRDFLLKPEILRAIVDCW-----RILVATNLFGRGMDIERVNIVFNYDMPEDS 129
+ IH+ + L +PE + W +++VAT FG G+D V V ++ M +
Sbjct: 290 LGIHAGAYHANL-EPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSM 348
Query: 130 DTYLHRVARAGRFGTKA 146
+ Y RAGR KA
Sbjct: 349 ENYYQESGRAGRDDMKA 365
>pdb|2FUG|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|2FUG|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus
pdb|3I9V|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3I9V|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 2 MolASU
pdb|3IAM|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAM|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Reduced, 2 MolASU,
WITH BOUND NADH
pdb|3IAS|6 Chain 6, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|F Chain F, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|O Chain O, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3IAS|X Chain X, Crystal Structure Of The Hydrophilic Domain Of Respiratory
Complex I From Thermus Thermophilus, Oxidized, 4 MolASU,
RE-Refined To 3.15 Angstrom Resolution
pdb|3M9S|6 Chain 6, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|3M9S|F Chain F, Crystal Structure Of Respiratory Complex I From Thermus
Thermophilus
pdb|2YBB|6 Chain 6, Fitted Model For Bovine Mitochondrial Supercomplex
I1iii2iv1 By Single Particle Cryo-Em (Emd-1876)
pdb|4HEA|6 Chain 6, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
pdb|4HEA|G Chain G, Crystal Structure Of The Entire Respiratory Complex I From
Thermus Thermophilus
Length = 181
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 8/79 (10%)
Query: 246 LVRNKKLNLSLLKHFILDECD-KMLEQLEMRRDV----QEIFRSSPHTKQVMMFSATLSK 300
LV + N F L C +M+ + R D+ E+FR+SP VM+ + LSK
Sbjct: 27 LVAWGRSNSLWPATFGLACCAIEMMASTDARNDLARFGSEVFRASPRQADVMIVAGRLSK 86
Query: 301 EIRPVCKKF---MHDPMEV 316
++ PV ++ M DP V
Sbjct: 87 KMAPVMRRVWEQMPDPKWV 105
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 30.8 bits (68), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 8/67 (11%)
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFI 261
+K + V + GG+ +DE ++ H V PGRI+ + + KLN F+
Sbjct: 128 IAKSLGRKFVRISLGGV---RDESEIRGHRRTYVGAMPGRIIQGMKKAGKLN----PVFL 180
Query: 262 LDECDKM 268
LDE DKM
Sbjct: 181 LDEIDKM 187
>pdb|3E2V|A Chain A, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
pdb|3E2V|B Chain B, Crystal Structure Of An Uncharacterized Amidohydrolase
From Saccharomyces Cerevisiae
Length = 401
Score = 29.3 bits (64), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 46/96 (47%), Gaps = 13/96 (13%)
Query: 363 SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH----KGLAITFASDENDA 418
+V + I LL E + P I R + L KYQE +DF K + +D+ +A
Sbjct: 288 AVVKQIPTERLLLETDAPWCEIKRTHASFQYLAKYQEVRDFEYPAFKSVKKNKLADKLNA 347
Query: 419 KILNNVQDRFD--------VSISELPDEIDLSTYIE 446
+ L V+ R + + +SE+ D +DL+T I+
Sbjct: 348 EELYMVKGRNEPCNMEQVAIVVSEVKD-VDLATLID 382
>pdb|2XU2|A Chain A, Crystal Structure Of The Hypothetical Protein Pa4511 From
Pseudomonas Aeruginosa
Length = 252
Score = 28.5 bits (62), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 14/39 (35%), Positives = 22/39 (56%)
Query: 59 GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD 97
GA DA + + AYV H + + D + E+LRA++D
Sbjct: 98 GALDAFCRSLGTQVAYVKPHGALYNDLVGDDELLRAVLD 136
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,000,588
Number of Sequences: 62578
Number of extensions: 412737
Number of successful extensions: 1233
Number of sequences better than 100.0: 75
Number of HSP's better than 100.0 without gapping: 71
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 986
Number of HSP's gapped (non-prelim): 140
length of query: 448
length of database: 14,973,337
effective HSP length: 102
effective length of query: 346
effective length of database: 8,590,381
effective search space: 2972271826
effective search space used: 2972271826
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)