Query psy1548
Match_columns 448
No_of_seqs 316 out of 2610
Neff 8.9
Searched_HMMs 46136
Date Fri Aug 16 22:09:36 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1548.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/1548hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0329|consensus 100.0 1.6E-60 3.5E-65 421.6 17.7 372 40-447 5-387 (387)
2 KOG0328|consensus 100.0 7.1E-56 1.5E-60 397.3 23.9 324 79-439 26-396 (400)
3 KOG0330|consensus 100.0 1.3E-55 2.9E-60 411.6 26.3 323 79-438 60-429 (476)
4 KOG0326|consensus 100.0 5E-55 1.1E-59 397.9 20.1 330 78-445 83-458 (459)
5 KOG0331|consensus 100.0 4.8E-54 1E-58 425.8 26.6 332 78-448 89-431 (519)
6 COG0513 SrmB Superfamily II DN 100.0 7.5E-52 1.6E-56 425.6 31.2 331 80-448 29-363 (513)
7 KOG0338|consensus 100.0 2.1E-50 4.5E-55 387.6 19.8 329 80-448 181-516 (691)
8 PRK11776 ATP-dependent RNA hel 100.0 6.1E-49 1.3E-53 402.8 31.6 329 80-448 4-332 (460)
9 PTZ00110 helicase; Provisional 100.0 2.7E-48 5.9E-53 402.9 35.4 335 71-441 121-509 (545)
10 PRK04837 ATP-dependent RNA hel 100.0 2.9E-48 6.3E-53 393.7 32.3 329 80-448 8-345 (423)
11 PRK11634 ATP-dependent RNA hel 100.0 2.2E-48 4.9E-53 407.2 30.8 330 80-448 6-335 (629)
12 PRK10590 ATP-dependent RNA hel 100.0 6.2E-48 1.3E-52 394.1 31.0 328 81-448 2-335 (456)
13 PRK04537 ATP-dependent RNA hel 100.0 9.8E-47 2.1E-51 392.6 36.9 322 80-438 9-386 (572)
14 KOG0343|consensus 100.0 3.1E-48 6.7E-53 375.7 21.8 330 79-448 68-405 (758)
15 KOG0340|consensus 100.0 1.2E-47 2.6E-52 354.4 23.6 324 79-439 6-384 (442)
16 KOG0327|consensus 100.0 1.1E-47 2.4E-52 359.5 23.4 322 80-439 26-393 (397)
17 PLN00206 DEAD-box ATP-dependen 100.0 2.2E-46 4.7E-51 387.5 34.8 337 70-444 111-503 (518)
18 KOG0345|consensus 100.0 3E-47 6.5E-52 363.2 23.8 331 81-448 5-347 (567)
19 PRK11192 ATP-dependent RNA hel 100.0 4.9E-46 1.1E-50 378.9 30.4 328 81-448 2-335 (434)
20 PRK01297 ATP-dependent RNA hel 100.0 3.9E-45 8.4E-50 375.8 37.0 324 79-438 86-465 (475)
21 KOG0333|consensus 100.0 9.3E-46 2E-50 356.9 29.2 335 71-441 236-650 (673)
22 KOG0346|consensus 100.0 1.2E-45 2.5E-50 349.5 24.5 291 80-404 19-318 (569)
23 KOG0339|consensus 100.0 8.6E-45 1.9E-49 348.6 30.6 333 70-439 213-598 (731)
24 KOG0332|consensus 100.0 6.7E-46 1.5E-50 344.8 21.3 328 78-443 88-472 (477)
25 KOG0336|consensus 100.0 9.9E-46 2.2E-50 346.9 22.1 334 75-448 214-555 (629)
26 KOG0342|consensus 100.0 6.7E-46 1.5E-50 356.3 21.2 332 79-448 81-420 (543)
27 PTZ00424 helicase 45; Provisio 100.0 7.6E-44 1.6E-48 359.7 37.4 324 79-439 27-397 (401)
28 KOG0335|consensus 100.0 1.1E-45 2.3E-50 360.5 22.9 342 68-448 62-427 (482)
29 KOG0341|consensus 100.0 4.2E-46 9.1E-51 347.3 11.9 339 70-448 160-511 (610)
30 KOG4284|consensus 100.0 5.5E-43 1.2E-47 344.2 20.0 297 73-404 18-322 (980)
31 KOG0334|consensus 100.0 8.6E-43 1.9E-47 362.1 21.9 336 68-440 353-744 (997)
32 KOG0347|consensus 100.0 4.6E-43 9.9E-48 339.8 14.0 329 79-448 180-553 (731)
33 KOG0348|consensus 100.0 2E-42 4.3E-47 334.4 18.3 334 77-448 133-537 (708)
34 KOG0337|consensus 100.0 2.6E-40 5.6E-45 311.8 23.6 322 79-437 20-389 (529)
35 TIGR03817 DECH_helic helicase/ 100.0 4.9E-39 1.1E-43 343.0 26.8 314 86-448 20-369 (742)
36 TIGR00614 recQ_fam ATP-depende 100.0 4.9E-36 1.1E-40 307.4 21.8 302 118-448 4-316 (470)
37 KOG0344|consensus 100.0 7.9E-36 1.7E-40 293.3 20.7 336 70-440 122-519 (593)
38 KOG0350|consensus 100.0 7.1E-36 1.5E-40 287.2 19.7 311 123-448 157-523 (620)
39 PLN03137 ATP-dependent DNA hel 100.0 1.1E-35 2.3E-40 316.7 22.8 298 123-448 458-770 (1195)
40 PRK13767 ATP-dependent helicas 100.0 4.5E-35 9.7E-40 318.5 25.7 318 87-448 18-380 (876)
41 PRK02362 ski2-like helicase; P 100.0 6.3E-35 1.4E-39 314.2 24.4 318 81-448 2-378 (737)
42 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.5E-34 3.4E-39 303.6 24.4 298 123-448 14-373 (844)
43 COG1201 Lhr Lhr-like helicases 100.0 6.1E-34 1.3E-38 297.6 24.6 285 87-417 8-315 (814)
44 PRK11057 ATP-dependent DNA hel 100.0 4.7E-34 1E-38 300.4 23.4 296 123-448 23-326 (607)
45 PRK00254 ski2-like helicase; P 100.0 1.3E-33 2.8E-38 303.3 26.8 287 81-416 2-331 (720)
46 TIGR01389 recQ ATP-dependent D 100.0 2.5E-34 5.5E-39 303.0 20.9 297 121-448 9-314 (591)
47 PRK09401 reverse gyrase; Revie 100.0 6.1E-32 1.3E-36 298.0 25.4 259 125-410 80-382 (1176)
48 PRK09751 putative ATP-dependen 100.0 2.1E-31 4.6E-36 294.7 26.6 285 154-448 1-367 (1490)
49 PRK01172 ski2-like helicase; P 100.0 1.6E-31 3.5E-36 285.8 24.8 283 81-415 2-320 (674)
50 TIGR00580 mfd transcription-re 100.0 8E-31 1.7E-35 282.9 27.6 263 121-415 448-721 (926)
51 PRK10689 transcription-repair 100.0 1.6E-29 3.5E-34 278.3 29.7 261 122-415 598-870 (1147)
52 PRK14701 reverse gyrase; Provi 100.0 8.2E-30 1.8E-34 286.7 26.9 265 123-414 78-386 (1638)
53 cd00268 DEADc DEAD-box helicas 100.0 6.8E-30 1.5E-34 233.6 21.2 200 82-316 1-202 (203)
54 TIGR01054 rgy reverse gyrase. 100.0 2.5E-29 5.3E-34 277.8 28.3 262 123-413 76-382 (1171)
55 PRK10917 ATP-dependent DNA hel 100.0 4.5E-29 9.7E-34 265.5 25.2 259 126-415 262-540 (681)
56 COG1205 Distinct helicase fami 100.0 5.9E-29 1.3E-33 266.8 24.6 306 123-448 68-405 (851)
57 KOG0349|consensus 100.0 6.2E-29 1.4E-33 235.4 19.9 258 180-440 286-671 (725)
58 COG0514 RecQ Superfamily II DN 100.0 1.1E-29 2.3E-34 257.1 15.0 299 121-448 13-320 (590)
59 COG1204 Superfamily II helicas 100.0 1E-28 2.2E-33 261.6 22.6 265 133-415 36-349 (766)
60 COG1202 Superfamily II helicas 100.0 1.6E-28 3.5E-33 240.0 21.8 283 78-404 192-490 (830)
61 TIGR00643 recG ATP-dependent D 100.0 3.3E-28 7.2E-33 257.2 23.8 260 125-415 235-517 (630)
62 TIGR01587 cas3_core CRISPR-ass 100.0 1.7E-28 3.6E-33 244.1 19.9 255 151-416 1-288 (358)
63 PHA02653 RNA helicase NPH-II; 100.0 7.3E-28 1.6E-32 251.9 24.1 302 87-419 118-459 (675)
64 TIGR03158 cas3_cyano CRISPR-as 100.0 2.8E-27 6.1E-32 233.9 22.7 291 132-448 1-355 (357)
65 PHA02558 uvsW UvsW helicase; P 100.0 4.8E-27 1E-31 242.4 25.3 292 128-448 114-435 (501)
66 PRK11664 ATP-dependent RNA hel 100.0 4E-27 8.7E-32 252.3 24.5 255 142-419 13-278 (812)
67 TIGR01970 DEAH_box_HrpB ATP-de 100.0 6.7E-27 1.4E-31 250.1 25.6 255 142-419 10-275 (819)
68 KOG0952|consensus 99.9 1.1E-26 2.3E-31 240.8 20.0 265 120-404 105-422 (1230)
69 COG1111 MPH1 ERCC4-like helica 99.9 9.1E-26 2E-30 219.4 21.7 160 128-300 15-174 (542)
70 PF00270 DEAD: DEAD/DEAH box h 99.9 6.6E-26 1.4E-30 200.8 17.8 165 131-304 2-168 (169)
71 PRK13766 Hef nuclease; Provisi 99.9 1.3E-24 2.9E-29 236.5 25.2 272 129-415 16-432 (773)
72 PRK12898 secA preprotein trans 99.9 7.5E-25 1.6E-29 226.1 19.3 300 124-448 102-569 (656)
73 KOG0351|consensus 99.9 1.3E-25 2.7E-30 239.8 13.1 294 130-448 266-575 (941)
74 KOG0354|consensus 99.9 1.2E-23 2.5E-28 215.8 20.4 167 123-301 57-224 (746)
75 PRK09200 preprotein translocas 99.9 1.8E-23 3.9E-28 220.3 19.4 298 125-448 78-524 (790)
76 TIGR00963 secA preprotein tran 99.9 4.9E-23 1.1E-27 213.8 21.4 300 124-448 55-500 (745)
77 TIGR03714 secA2 accessory Sec 99.9 5.2E-23 1.1E-27 214.9 20.8 259 142-414 78-480 (762)
78 KOG0352|consensus 99.9 4E-24 8.6E-29 202.8 11.1 264 125-414 20-313 (641)
79 KOG0947|consensus 99.9 5.3E-23 1.1E-27 211.3 19.2 297 123-448 292-704 (1248)
80 PRK09694 helicase Cas3; Provis 99.9 6.5E-22 1.4E-26 212.0 24.2 283 121-415 282-630 (878)
81 KOG0353|consensus 99.9 1.5E-22 3.2E-27 189.5 16.1 278 83-404 74-367 (695)
82 TIGR00603 rad25 DNA repair hel 99.9 3E-22 6.5E-27 209.2 16.9 250 124-404 251-541 (732)
83 PRK11131 ATP-dependent RNA hel 99.9 3E-21 6.4E-26 211.2 22.5 258 126-416 72-347 (1294)
84 COG4581 Superfamily II RNA hel 99.9 2.2E-21 4.7E-26 206.5 20.8 267 124-415 115-479 (1041)
85 PRK13104 secA preprotein trans 99.9 6.5E-21 1.4E-25 200.7 23.2 259 125-404 82-494 (896)
86 KOG0951|consensus 99.9 1.1E-21 2.3E-26 206.3 16.4 262 142-414 317-641 (1674)
87 KOG0948|consensus 99.9 6.3E-21 1.4E-25 191.8 19.5 254 124-404 125-472 (1041)
88 PRK05580 primosome assembly pr 99.9 4.2E-20 9.1E-25 196.3 24.3 255 125-404 141-480 (679)
89 PRK12899 secA preprotein trans 99.9 1.9E-20 4E-25 197.0 20.4 153 83-271 65-230 (970)
90 COG1061 SSL2 DNA or RNA helica 99.8 5.9E-20 1.3E-24 186.3 20.2 248 128-404 36-332 (442)
91 PRK12904 preprotein translocas 99.8 2.1E-19 4.5E-24 189.3 22.7 264 125-414 81-486 (830)
92 COG1200 RecG RecG-like helicas 99.8 2.6E-19 5.6E-24 181.6 20.8 262 125-415 259-542 (677)
93 TIGR01967 DEAH_box_HrpA ATP-de 99.8 1.5E-18 3.2E-23 190.9 25.3 264 123-416 62-340 (1283)
94 PRK04914 ATP-dependent helicas 99.8 6.8E-19 1.5E-23 190.1 21.6 304 129-448 153-586 (956)
95 TIGR00595 priA primosomal prot 99.8 2.6E-18 5.5E-23 176.6 24.4 233 153-404 1-312 (505)
96 smart00487 DEXDc DEAD-like hel 99.8 2E-18 4.3E-23 155.9 18.9 186 123-320 6-192 (201)
97 PRK13107 preprotein translocas 99.8 3.9E-18 8.5E-23 179.4 19.9 129 125-271 82-217 (908)
98 COG1203 CRISPR-associated heli 99.8 3.8E-18 8.3E-23 183.0 14.7 281 151-441 216-521 (733)
99 PRK11448 hsdR type I restricti 99.8 1.1E-17 2.4E-22 184.4 18.2 264 127-405 412-756 (1123)
100 COG1197 Mfd Transcription-repa 99.8 1.9E-16 4.2E-21 169.2 24.9 254 133-415 599-864 (1139)
101 COG1110 Reverse gyrase [DNA re 99.7 1.9E-15 4.1E-20 158.0 24.9 262 125-414 82-393 (1187)
102 KOG0950|consensus 99.7 3E-16 6.4E-21 163.1 14.9 260 130-414 225-556 (1008)
103 cd00046 DEXDc DEAD-like helica 99.7 1.4E-15 3.1E-20 129.1 16.8 144 150-298 1-144 (144)
104 PRK12906 secA preprotein trans 99.7 6.8E-16 1.5E-20 162.3 14.3 299 125-448 80-536 (796)
105 COG4098 comFA Superfamily II D 99.7 6.9E-15 1.5E-19 137.1 18.3 254 130-414 99-363 (441)
106 KOG1123|consensus 99.6 2.5E-16 5.4E-21 152.7 7.0 253 122-404 296-588 (776)
107 PLN03142 Probable chromatin-re 99.6 9E-15 2E-19 159.0 18.6 269 128-413 169-546 (1033)
108 PF04851 ResIII: Type III rest 99.6 1.2E-14 2.6E-19 130.1 12.3 153 129-299 4-183 (184)
109 COG1643 HrpA HrpA-like helicas 99.6 2.3E-13 4.9E-18 144.8 23.6 263 127-414 49-321 (845)
110 COG4096 HsdR Type I site-speci 99.6 2.3E-14 5E-19 147.8 15.0 253 129-404 166-479 (875)
111 TIGR01407 dinG_rel DnaQ family 99.6 8.9E-13 1.9E-17 144.6 26.7 84 131-219 248-333 (850)
112 TIGR00348 hsdR type I site-spe 99.5 4.9E-13 1.1E-17 142.4 20.3 136 150-299 264-403 (667)
113 COG0514 RecQ Superfamily II DN 99.5 1E-14 2.2E-19 148.6 3.3 136 8-143 185-325 (590)
114 PRK07246 bifunctional ATP-depe 99.5 1.4E-11 3E-16 133.7 24.6 83 131-220 248-331 (820)
115 KOG0385|consensus 99.4 3.4E-12 7.3E-17 130.1 16.0 271 128-415 167-560 (971)
116 PRK12326 preprotein translocas 99.4 4.5E-11 9.7E-16 123.9 19.7 127 125-269 78-211 (764)
117 KOG0922|consensus 99.3 1.5E-10 3.3E-15 117.3 21.9 251 128-404 51-316 (674)
118 COG1198 PriA Primosomal protei 99.3 1.2E-10 2.5E-15 122.5 21.2 152 130-301 200-362 (730)
119 KOG0920|consensus 99.3 1E-10 2.3E-15 124.4 20.1 252 142-404 181-470 (924)
120 PRK13103 secA preprotein trans 99.3 1.1E-10 2.5E-15 123.7 19.0 127 125-269 82-215 (913)
121 KOG0951|consensus 99.3 1.8E-10 3.8E-15 123.0 20.1 267 110-404 1130-1431(1674)
122 CHL00122 secA preprotein trans 99.2 4.7E-10 1E-14 118.6 19.1 127 125-269 76-209 (870)
123 TIGR03117 cas_csf4 CRISPR-asso 99.2 8.2E-11 1.8E-15 122.7 12.4 75 143-218 10-86 (636)
124 TIGR00631 uvrb excinuclease AB 99.2 2.8E-09 6.1E-14 112.8 23.9 73 340-414 426-500 (655)
125 PRK12902 secA preprotein trans 99.2 1.2E-09 2.6E-14 115.4 20.7 127 125-269 85-218 (939)
126 KOG0949|consensus 99.2 5.7E-11 1.2E-15 123.9 8.8 158 131-301 514-674 (1330)
127 KOG0387|consensus 99.2 2.3E-10 5.1E-15 117.4 12.6 257 129-404 206-597 (923)
128 PF06862 DUF1253: Protein of u 99.1 1.7E-08 3.7E-13 100.6 22.6 258 179-440 36-384 (442)
129 KOG4150|consensus 99.1 1.5E-10 3.3E-15 114.5 7.9 300 133-448 291-623 (1034)
130 PRK12900 secA preprotein trans 99.1 2.1E-09 4.6E-14 114.7 16.0 111 334-448 576-694 (1025)
131 KOG0351|consensus 99.1 8.6E-11 1.9E-15 126.8 5.0 133 9-141 440-578 (941)
132 PF07652 Flavi_DEAD: Flaviviru 99.1 7E-10 1.5E-14 92.8 9.3 136 149-302 4-140 (148)
133 KOG1000|consensus 99.1 4.9E-09 1.1E-13 102.6 16.4 254 130-404 200-542 (689)
134 COG0556 UvrB Helicase subunit 99.1 6.4E-08 1.4E-12 96.0 23.9 52 353-404 445-496 (663)
135 KOG0392|consensus 99.1 4.6E-09 1E-13 112.2 17.0 158 123-297 966-1137(1549)
136 KOG0389|consensus 99.0 3.8E-09 8.3E-14 108.5 14.9 131 129-270 400-538 (941)
137 PRK05298 excinuclease ABC subu 99.0 1.9E-07 4.1E-12 99.5 28.4 99 341-439 431-589 (652)
138 KOG0390|consensus 99.0 2E-08 4.2E-13 105.6 19.9 160 127-297 237-413 (776)
139 KOG0924|consensus 99.0 9.9E-09 2.2E-13 103.9 16.4 239 148-404 370-623 (1042)
140 KOG0384|consensus 99.0 7.3E-10 1.6E-14 118.4 8.6 270 127-415 369-772 (1373)
141 smart00488 DEXDc2 DEAD-like he 99.0 2.5E-09 5.4E-14 102.7 11.2 77 125-203 5-84 (289)
142 smart00489 DEXDc3 DEAD-like he 99.0 2.5E-09 5.4E-14 102.7 11.2 77 125-203 5-84 (289)
143 PRK12903 secA preprotein trans 99.0 7.3E-09 1.6E-13 109.3 15.2 127 125-269 78-211 (925)
144 KOG0926|consensus 99.0 4.1E-09 8.8E-14 108.3 12.9 271 119-413 238-537 (1172)
145 KOG0923|consensus 99.0 1.3E-08 2.7E-13 102.9 15.7 246 142-404 273-532 (902)
146 PF00176 SNF2_N: SNF2 family N 99.0 2.4E-09 5.2E-14 103.5 9.6 143 148-298 24-172 (299)
147 PLN03137 ATP-dependent DNA hel 98.9 4.8E-10 1E-14 121.6 4.0 135 9-143 636-775 (1195)
148 KOG0953|consensus 98.9 5.8E-09 1.3E-13 103.5 9.3 223 151-416 193-419 (700)
149 PRK08074 bifunctional ATP-depe 98.8 1.6E-08 3.6E-13 111.8 12.1 79 133-217 262-344 (928)
150 KOG1002|consensus 98.8 1E-07 2.2E-12 93.5 15.9 126 129-270 185-330 (791)
151 PF02399 Herpes_ori_bp: Origin 98.8 4.5E-07 9.7E-12 95.4 21.3 233 152-404 52-328 (824)
152 TIGR02562 cas3_yersinia CRISPR 98.8 3.3E-07 7.1E-12 98.8 19.6 153 149-305 431-641 (1110)
153 KOG0925|consensus 98.7 2.3E-07 5.1E-12 90.9 13.6 256 79-385 24-293 (699)
154 cd00079 HELICc Helicase superf 98.7 1.4E-07 3E-12 79.1 9.9 114 330-448 3-118 (131)
155 KOG0353|consensus 98.6 2.7E-08 5.8E-13 94.4 4.1 116 20-135 283-404 (695)
156 PF07517 SecA_DEAD: SecA DEAD- 98.6 3.3E-07 7.1E-12 86.1 10.7 130 124-271 76-212 (266)
157 PRK14873 primosome assembly pr 98.6 8.5E-07 1.9E-11 94.0 14.4 140 152-305 163-310 (665)
158 KOG4439|consensus 98.6 1.3E-06 2.8E-11 89.3 14.4 116 149-268 345-475 (901)
159 KOG0952|consensus 98.5 3.3E-08 7.1E-13 104.7 2.7 240 149-404 943-1205(1230)
160 TIGR01389 recQ ATP-dependent D 98.5 5.7E-08 1.2E-12 103.1 4.3 134 9-143 182-319 (591)
161 PRK11057 ATP-dependent DNA hel 98.5 7.3E-08 1.6E-12 102.2 4.3 142 9-157 194-342 (607)
162 PRK11747 dinG ATP-dependent DN 98.5 8.3E-07 1.8E-11 95.4 11.1 47 149-197 49-95 (697)
163 TIGR00614 recQ_fam ATP-depende 98.4 1.4E-07 3E-12 97.3 4.5 131 10-142 183-320 (470)
164 COG4889 Predicted helicase [Ge 98.4 3.2E-07 7E-12 95.5 5.5 136 123-271 156-319 (1518)
165 KOG0352|consensus 98.4 6.3E-08 1.4E-12 93.4 -0.7 133 10-142 197-349 (641)
166 PRK15483 type III restriction- 98.3 2.9E-06 6.2E-11 91.8 10.8 146 149-300 59-240 (986)
167 KOG2340|consensus 98.3 5.9E-06 1.3E-10 82.1 11.7 294 142-439 224-635 (698)
168 KOG0391|consensus 98.2 6E-06 1.3E-10 88.5 10.9 152 129-298 616-775 (1958)
169 COG0610 Type I site-specific r 98.2 8.4E-06 1.8E-10 90.3 12.6 141 148-299 272-414 (962)
170 KOG0386|consensus 98.2 4.5E-06 9.7E-11 88.6 7.9 65 340-404 710-776 (1157)
171 PF13086 AAA_11: AAA domain; P 98.1 2.4E-05 5.1E-10 72.4 11.1 66 130-202 3-75 (236)
172 PRK12901 secA preprotein trans 98.0 4.7E-05 1E-09 82.3 12.2 114 150-269 183-303 (1112)
173 PF09848 DUF2075: Uncharacteri 98.0 4.1E-05 8.8E-10 76.0 10.2 109 151-284 3-117 (352)
174 COG0553 HepA Superfamily II DN 97.9 0.00019 4.1E-09 79.9 16.1 133 128-270 338-486 (866)
175 TIGR00604 rad3 DNA repair heli 97.9 1.7E-05 3.6E-10 85.9 5.5 79 121-204 6-84 (705)
176 PF14617 CMS1: U3-containing 9 97.8 4.6E-05 9.9E-10 70.9 6.9 87 178-266 124-211 (252)
177 KOG0333|consensus 97.8 1.6E-05 3.5E-10 79.0 4.1 95 48-143 517-612 (673)
178 KOG0388|consensus 97.7 0.00014 3.1E-09 74.7 9.4 151 129-299 568-734 (1185)
179 COG0653 SecA Preprotein transl 97.7 0.00063 1.4E-08 72.6 13.6 114 149-269 93-213 (822)
180 PF02562 PhoH: PhoH-like prote 97.6 0.00012 2.6E-09 66.2 6.3 139 131-297 7-155 (205)
181 PF13872 AAA_34: P-loop contai 97.6 0.00025 5.4E-09 67.2 8.5 146 149-304 62-226 (303)
182 COG3587 Restriction endonuclea 97.6 0.0002 4.3E-09 75.4 8.3 147 150-303 75-247 (985)
183 PF13245 AAA_19: Part of AAA d 97.6 0.00016 3.5E-09 54.6 5.2 52 149-200 9-62 (76)
184 PRK10536 hypothetical protein; 97.5 0.00058 1.3E-08 63.6 9.7 145 123-295 54-210 (262)
185 COG1199 DinG Rad3-related DNA 97.5 0.00011 2.4E-09 79.2 4.6 72 128-203 15-86 (654)
186 PF12340 DUF3638: Protein of u 97.4 0.00067 1.5E-08 62.0 8.7 110 130-246 25-144 (229)
187 TIGR01447 recD exodeoxyribonuc 97.4 0.00084 1.8E-08 70.7 10.2 140 131-297 148-295 (586)
188 PF00271 Helicase_C: Helicase 97.4 3.6E-05 7.9E-10 58.4 -0.2 73 372-448 1-73 (78)
189 KOG0331|consensus 97.4 0.00012 2.6E-09 74.3 3.4 43 99-141 392-434 (519)
190 PF13604 AAA_30: AAA domain; P 97.4 0.00037 8E-09 63.1 6.3 118 133-297 6-130 (196)
191 PRK10875 recD exonuclease V su 97.3 0.0028 6.1E-08 67.0 13.1 139 131-297 155-301 (615)
192 PRK04837 ATP-dependent RNA hel 97.3 0.00016 3.5E-09 73.6 3.7 45 99-143 306-350 (423)
193 smart00490 HELICc helicase sup 97.3 0.00026 5.6E-09 53.6 3.9 76 369-448 2-77 (82)
194 PRK12723 flagellar biosynthesi 97.3 0.0059 1.3E-07 60.9 14.1 132 149-310 174-310 (388)
195 KOG1802|consensus 97.2 0.00061 1.3E-08 69.9 6.7 83 119-217 404-486 (935)
196 PF13401 AAA_22: AAA domain; P 97.2 0.0009 1.9E-08 56.0 6.4 19 149-167 4-22 (131)
197 KOG0989|consensus 97.2 0.0021 4.6E-08 60.6 9.2 58 251-310 124-184 (346)
198 PF00271 Helicase_C: Helicase 97.2 0.00035 7.5E-09 52.9 3.2 46 96-141 31-76 (78)
199 KOG1803|consensus 97.1 0.00055 1.2E-08 69.8 5.1 68 125-201 182-250 (649)
200 COG0513 SrmB Superfamily II DN 97.1 0.00053 1.1E-08 71.4 4.3 56 99-157 324-379 (513)
201 PRK10590 ATP-dependent RNA hel 97.0 0.00042 9.1E-09 71.3 3.2 44 99-142 296-339 (456)
202 PRK11192 ATP-dependent RNA hel 97.0 0.00052 1.1E-08 70.2 3.9 45 98-142 295-339 (434)
203 PLN00206 DEAD-box ATP-dependen 97.0 0.00043 9.3E-09 72.3 3.2 45 99-143 419-463 (518)
204 COG1419 FlhF Flagellar GTP-bin 97.0 0.017 3.7E-07 57.1 13.5 138 147-313 201-339 (407)
205 KOG0336|consensus 97.0 0.0005 1.1E-08 66.7 2.8 43 100-142 517-559 (629)
206 PTZ00110 helicase; Provisional 96.9 0.00067 1.5E-08 71.3 3.9 64 91-157 419-483 (545)
207 TIGR01448 recD_rel helicase, p 96.9 0.0032 7E-08 68.2 9.1 124 129-297 324-452 (720)
208 PRK11776 ATP-dependent RNA hel 96.9 0.00073 1.6E-08 69.6 3.8 44 99-142 293-336 (460)
209 cd00009 AAA The AAA+ (ATPases 96.9 0.012 2.6E-07 49.4 10.7 17 149-165 19-35 (151)
210 PF00448 SRP54: SRP54-type pro 96.9 0.0051 1.1E-07 55.6 8.6 131 151-309 3-136 (196)
211 PRK06526 transposase; Provisio 96.9 0.0083 1.8E-07 56.5 10.1 24 144-167 93-116 (254)
212 KOG0342|consensus 96.9 0.0015 3.3E-08 64.9 5.3 64 91-157 373-436 (543)
213 PF00308 Bac_DnaA: Bacterial d 96.8 0.01 2.2E-07 54.7 10.3 108 151-302 36-144 (219)
214 KOG0341|consensus 96.8 0.00091 2E-08 64.5 3.2 44 99-142 472-515 (610)
215 PRK11634 ATP-dependent RNA hel 96.8 0.001 2.2E-08 70.9 3.9 62 91-155 287-349 (629)
216 PRK08181 transposase; Validate 96.8 0.0075 1.6E-07 57.2 9.3 46 147-196 104-149 (269)
217 PRK04537 ATP-dependent RNA hel 96.8 0.0011 2.4E-08 70.0 3.9 52 91-142 299-351 (572)
218 PF00580 UvrD-helicase: UvrD/R 96.8 0.0026 5.6E-08 61.7 6.3 63 142-206 8-71 (315)
219 PRK04296 thymidine kinase; Pro 96.8 0.0033 7.2E-08 56.5 6.4 37 149-188 2-38 (190)
220 PRK14086 dnaA chromosomal repl 96.8 0.0062 1.3E-07 63.8 9.2 109 150-302 315-424 (617)
221 PRK01297 ATP-dependent RNA hel 96.7 0.0013 2.8E-08 68.1 4.0 44 99-142 386-429 (475)
222 KOG0348|consensus 96.7 0.0012 2.6E-08 66.3 3.3 44 99-142 498-541 (708)
223 COG1875 NYN ribonuclease and A 96.7 0.0058 1.3E-07 59.1 7.7 136 142-296 236-386 (436)
224 smart00382 AAA ATPases associa 96.7 0.0051 1.1E-07 51.2 6.7 41 149-192 2-42 (148)
225 PRK14722 flhF flagellar biosyn 96.6 0.025 5.5E-07 56.0 11.9 136 146-310 134-270 (374)
226 KOG0335|consensus 96.6 0.0013 2.8E-08 66.0 2.7 43 100-142 389-431 (482)
227 PRK14974 cell division protein 96.6 0.024 5.3E-07 55.5 11.4 55 256-310 222-276 (336)
228 PTZ00424 helicase 45; Provisio 96.5 0.002 4.4E-08 65.0 3.8 43 99-141 318-360 (401)
229 KOG0330|consensus 96.5 0.0024 5.3E-08 61.7 3.9 65 79-143 322-395 (476)
230 PRK05703 flhF flagellar biosyn 96.5 0.044 9.5E-07 55.7 13.2 132 148-310 220-355 (424)
231 KOG0921|consensus 96.4 0.011 2.4E-07 62.9 8.1 247 148-404 392-700 (1282)
232 KOG0298|consensus 96.4 0.013 2.8E-07 64.7 8.8 154 142-304 367-556 (1394)
233 KOG0345|consensus 96.4 0.0028 6.1E-08 62.8 3.5 53 90-142 298-351 (567)
234 cd01120 RecA-like_NTPases RecA 96.4 0.15 3.2E-06 43.8 14.2 38 152-192 2-39 (165)
235 COG3421 Uncharacterized protei 96.4 0.0081 1.8E-07 61.4 6.7 152 154-309 2-175 (812)
236 KOG1132|consensus 96.4 0.014 3E-07 62.3 8.6 68 133-206 26-136 (945)
237 PRK11889 flhF flagellar biosyn 96.3 0.062 1.3E-06 53.4 12.5 132 149-310 241-375 (436)
238 PRK00149 dnaA chromosomal repl 96.3 0.017 3.6E-07 59.4 9.0 44 150-195 149-192 (450)
239 KOG1001|consensus 96.3 0.022 4.7E-07 60.8 9.7 110 150-271 153-269 (674)
240 KOG0328|consensus 96.2 0.0053 1.2E-07 57.0 4.3 44 98-141 316-359 (400)
241 PRK05642 DNA replication initi 96.2 0.015 3.2E-07 54.2 7.3 45 256-300 97-141 (234)
242 KOG1015|consensus 96.2 0.2 4.3E-06 54.2 15.7 149 149-304 696-866 (1567)
243 TIGR00362 DnaA chromosomal rep 96.2 0.087 1.9E-06 53.4 13.1 37 150-187 137-173 (405)
244 TIGR03817 DECH_helic helicase/ 96.1 0.012 2.6E-07 64.1 7.2 44 100-143 331-374 (742)
245 PRK06893 DNA replication initi 96.1 0.02 4.3E-07 53.2 7.4 47 255-301 90-137 (229)
246 PRK14087 dnaA chromosomal repl 96.0 0.046 9.9E-07 56.0 10.2 48 150-199 142-189 (450)
247 PHA02533 17 large terminase pr 96.0 0.031 6.8E-07 58.3 9.0 151 125-297 56-209 (534)
248 cd01124 KaiC KaiC is a circadi 95.9 0.097 2.1E-06 46.5 11.0 48 152-203 2-49 (187)
249 PRK00411 cdc6 cell division co 95.9 0.046 1E-06 55.0 9.9 36 150-186 56-91 (394)
250 KOG0343|consensus 95.9 0.0061 1.3E-07 61.6 3.3 61 95-158 362-422 (758)
251 TIGR01547 phage_term_2 phage t 95.9 0.048 1E-06 55.1 9.8 147 152-310 4-152 (396)
252 PF05127 Helicase_RecD: Helica 95.9 0.0021 4.6E-08 56.6 -0.0 125 153-300 1-125 (177)
253 PRK08084 DNA replication initi 95.8 0.025 5.5E-07 52.7 7.1 18 149-166 45-62 (235)
254 PRK12898 secA preprotein trans 95.8 0.0082 1.8E-07 63.5 3.9 47 97-143 520-574 (656)
255 KOG0326|consensus 95.8 0.0066 1.4E-07 57.4 2.8 43 100-142 374-416 (459)
256 KOG0329|consensus 95.8 0.0041 8.8E-08 56.9 1.3 41 102-142 302-342 (387)
257 KOG0350|consensus 95.8 0.0058 1.3E-07 61.0 2.5 60 100-164 485-544 (620)
258 PF03354 Terminase_1: Phage Te 95.8 0.028 6.1E-07 58.2 7.7 135 150-295 23-160 (477)
259 PLN03025 replication factor C 95.7 0.11 2.4E-06 50.8 11.4 39 255-295 98-136 (319)
260 TIGR02768 TraA_Ti Ti-type conj 95.7 0.059 1.3E-06 58.8 10.1 118 131-295 355-474 (744)
261 PRK06921 hypothetical protein; 95.7 0.051 1.1E-06 51.6 8.5 45 148-195 116-160 (266)
262 COG1484 DnaC DNA replication p 95.7 0.039 8.6E-07 52.0 7.6 51 147-201 103-153 (254)
263 PRK14088 dnaA chromosomal repl 95.6 0.14 2.9E-06 52.5 11.9 38 150-188 131-168 (440)
264 PRK08727 hypothetical protein; 95.5 0.058 1.3E-06 50.2 8.2 35 150-187 42-76 (233)
265 PRK13889 conjugal transfer rel 95.5 0.061 1.3E-06 59.9 9.6 118 133-297 351-470 (988)
266 KOG0347|consensus 95.5 0.0087 1.9E-07 60.5 2.7 58 99-159 514-571 (731)
267 PRK14956 DNA polymerase III su 95.5 0.056 1.2E-06 55.2 8.5 19 150-168 41-59 (484)
268 PRK12422 chromosomal replicati 95.5 0.09 2E-06 53.7 10.1 50 255-304 201-251 (445)
269 PRK14723 flhF flagellar biosyn 95.5 0.21 4.7E-06 53.9 13.1 131 149-310 185-318 (767)
270 PRK09751 putative ATP-dependen 95.5 0.044 9.5E-07 63.3 8.3 97 100-201 329-425 (1490)
271 KOG0338|consensus 95.5 0.012 2.5E-07 59.1 3.3 56 99-157 477-532 (691)
272 TIGR02881 spore_V_K stage V sp 95.4 0.1 2.3E-06 49.4 9.7 18 149-166 42-59 (261)
273 PRK12377 putative replication 95.4 0.085 1.8E-06 49.4 8.9 45 149-197 101-145 (248)
274 PRK08116 hypothetical protein; 95.4 0.087 1.9E-06 50.1 9.0 43 150-196 115-157 (268)
275 PRK13767 ATP-dependent helicas 95.4 0.026 5.7E-07 62.7 6.2 43 100-142 342-384 (876)
276 TIGR03420 DnaA_homol_Hda DnaA 95.4 0.096 2.1E-06 48.2 9.1 20 148-167 37-56 (226)
277 PRK00771 signal recognition pa 95.4 0.17 3.7E-06 51.4 11.5 132 149-310 95-229 (437)
278 KOG0340|consensus 95.4 0.016 3.4E-07 55.6 3.7 43 99-141 305-347 (442)
279 KOG0332|consensus 95.3 0.017 3.7E-07 55.8 3.9 72 69-141 351-429 (477)
280 PRK09200 preprotein translocas 95.3 0.012 2.6E-07 63.7 3.2 46 98-143 476-529 (790)
281 COG0470 HolB ATPase involved i 95.3 0.16 3.5E-06 49.4 10.7 40 255-296 108-147 (325)
282 TIGR00376 DNA helicase, putati 95.2 0.027 5.8E-07 60.2 5.5 65 129-202 158-223 (637)
283 PF05970 PIF1: PIF1-like helic 95.2 0.043 9.4E-07 54.7 6.5 46 147-195 20-65 (364)
284 PRK09183 transposase/IS protei 95.2 0.13 2.8E-06 48.7 9.3 22 146-167 99-120 (259)
285 PF06745 KaiC: KaiC; InterPro 95.1 0.088 1.9E-06 48.6 8.0 139 145-298 15-160 (226)
286 PF13173 AAA_14: AAA domain 95.1 0.25 5.5E-06 41.1 10.1 38 256-297 61-98 (128)
287 CHL00181 cbbX CbbX; Provisiona 95.1 0.19 4.1E-06 48.3 10.3 20 148-167 58-77 (287)
288 KOG0344|consensus 95.0 0.022 4.8E-07 58.1 3.8 58 100-160 440-497 (593)
289 PHA02544 44 clamp loader, smal 95.0 0.16 3.6E-06 49.4 10.0 40 256-296 100-139 (316)
290 PRK14721 flhF flagellar biosyn 95.0 0.34 7.5E-06 48.9 12.1 135 147-310 189-324 (420)
291 COG4626 Phage terminase-like p 94.9 0.14 2.9E-06 52.7 9.2 152 124-296 57-223 (546)
292 TIGR02880 cbbX_cfxQ probable R 94.9 0.3 6.5E-06 46.9 11.2 19 148-166 57-75 (284)
293 PRK07764 DNA polymerase III su 94.9 0.14 3E-06 56.3 9.8 39 255-295 119-157 (824)
294 TIGR00963 secA preprotein tran 94.9 0.022 4.8E-07 60.9 3.6 52 92-143 447-505 (745)
295 PRK12402 replication factor C 94.9 0.13 2.9E-06 50.4 9.0 40 255-296 124-163 (337)
296 PRK12727 flagellar biosynthesi 94.9 0.49 1.1E-05 49.0 13.0 133 145-309 346-481 (559)
297 PHA03368 DNA packaging termina 94.8 0.18 3.8E-06 53.2 9.7 134 149-297 254-389 (738)
298 PRK14949 DNA polymerase III su 94.8 0.19 4.1E-06 55.0 10.2 43 255-300 118-160 (944)
299 PRK07003 DNA polymerase III su 94.8 0.16 3.4E-06 54.6 9.5 40 255-296 118-157 (830)
300 TIGR00596 rad1 DNA repair prot 94.7 0.067 1.4E-06 58.4 6.9 67 233-300 8-74 (814)
301 PF00004 AAA: ATPase family as 94.7 0.41 8.9E-06 39.5 10.4 15 152-166 1-15 (132)
302 PF05621 TniB: Bacterial TniB 94.7 0.11 2.4E-06 49.6 7.6 39 255-294 144-186 (302)
303 PF13177 DNA_pol3_delta2: DNA 94.7 0.17 3.8E-06 44.1 8.4 42 255-298 101-142 (162)
304 KOG0991|consensus 94.7 0.054 1.2E-06 49.4 5.1 44 252-297 109-152 (333)
305 PRK06731 flhF flagellar biosyn 94.7 0.4 8.8E-06 45.5 11.3 131 149-310 75-209 (270)
306 PRK06995 flhF flagellar biosyn 94.6 0.22 4.7E-06 51.2 9.8 21 148-168 255-275 (484)
307 smart00490 HELICc helicase sup 94.6 0.031 6.7E-07 41.9 2.9 44 98-141 37-80 (82)
308 PRK00440 rfc replication facto 94.6 0.36 7.9E-06 46.8 11.1 39 256-296 102-140 (319)
309 PTZ00112 origin recognition co 94.6 0.39 8.4E-06 52.4 11.7 17 152-168 784-800 (1164)
310 PRK08903 DnaA regulatory inact 94.6 0.19 4E-06 46.4 8.6 18 149-166 42-59 (227)
311 TIGR02928 orc1/cdc6 family rep 94.5 0.24 5.2E-06 49.3 9.9 24 150-174 41-64 (365)
312 TIGR00678 holB DNA polymerase 94.5 0.29 6.3E-06 43.7 9.5 39 254-294 94-132 (188)
313 KOG1805|consensus 94.5 0.075 1.6E-06 57.5 6.2 120 133-271 674-811 (1100)
314 cd01122 GP4d_helicase GP4d_hel 94.5 0.54 1.2E-05 44.6 11.8 42 144-187 25-66 (271)
315 PRK12724 flagellar biosynthesi 94.4 0.69 1.5E-05 46.6 12.5 128 149-309 223-356 (432)
316 PRK14960 DNA polymerase III su 94.3 0.3 6.6E-06 51.7 10.3 39 255-295 117-155 (702)
317 PRK14962 DNA polymerase III su 94.3 0.28 6.1E-06 50.5 10.0 18 151-168 38-55 (472)
318 PRK06835 DNA replication prote 94.3 0.53 1.1E-05 46.1 11.4 44 149-196 183-226 (329)
319 PRK07952 DNA replication prote 94.3 0.41 8.9E-06 44.8 10.2 42 150-195 100-141 (244)
320 PHA02653 RNA helicase NPH-II; 94.3 0.031 6.6E-07 59.9 3.0 53 90-142 436-502 (675)
321 PRK12323 DNA polymerase III su 94.2 0.31 6.7E-06 51.6 10.1 41 255-297 123-163 (700)
322 PF05729 NACHT: NACHT domain 94.2 0.36 7.8E-06 41.6 9.2 39 259-297 84-129 (166)
323 KOG4284|consensus 94.2 0.033 7.1E-07 57.6 2.8 44 100-143 324-367 (980)
324 TIGR02785 addA_Gpos recombinat 94.2 0.24 5.2E-06 57.3 10.0 118 133-267 6-126 (1232)
325 PRK09111 DNA polymerase III su 94.1 0.32 6.9E-06 51.6 10.2 40 254-295 130-169 (598)
326 PRK13826 Dtr system oriT relax 94.1 0.26 5.6E-06 55.5 9.6 122 129-297 382-505 (1102)
327 TIGR02760 TraI_TIGR conjugativ 94.1 1.6 3.6E-05 52.7 16.8 231 133-404 434-686 (1960)
328 PRK12726 flagellar biosynthesi 94.1 0.6 1.3E-05 46.4 11.1 24 147-170 204-227 (407)
329 PRK13833 conjugal transfer pro 94.0 0.067 1.4E-06 52.1 4.5 46 147-193 142-187 (323)
330 COG2909 MalT ATP-dependent tra 94.0 0.39 8.4E-06 51.7 10.4 42 258-300 131-172 (894)
331 PRK05986 cob(I)alamin adenolsy 94.0 1.1 2.4E-05 40.0 11.8 145 148-307 21-167 (191)
332 PRK07940 DNA polymerase III su 94.0 0.41 8.8E-06 48.2 10.1 46 255-303 116-161 (394)
333 PRK11054 helD DNA helicase IV; 94.0 0.098 2.1E-06 56.4 6.0 72 126-205 194-266 (684)
334 PRK14958 DNA polymerase III su 94.0 0.39 8.5E-06 50.0 10.3 39 255-295 118-156 (509)
335 TIGR02782 TrbB_P P-type conjug 94.0 0.086 1.9E-06 51.0 5.1 45 147-192 130-174 (299)
336 PRK11331 5-methylcytosine-spec 93.9 0.14 3E-06 51.8 6.7 26 142-167 187-212 (459)
337 PRK08533 flagellar accessory p 93.9 0.82 1.8E-05 42.4 11.4 55 146-204 21-75 (230)
338 PHA03333 putative ATPase subun 93.9 0.63 1.4E-05 49.3 11.5 54 150-205 188-241 (752)
339 TIGR00064 ftsY signal recognit 93.8 0.87 1.9E-05 43.4 11.6 134 149-310 72-214 (272)
340 PRK13342 recombination factor 93.8 0.47 1E-05 48.2 10.4 18 150-167 37-54 (413)
341 COG1435 Tdk Thymidine kinase [ 93.8 0.29 6.3E-06 43.6 7.6 106 149-285 4-109 (201)
342 PRK12906 secA preprotein trans 93.8 0.052 1.1E-06 58.6 3.6 47 97-143 487-541 (796)
343 PRK14964 DNA polymerase III su 93.8 0.56 1.2E-05 48.4 10.9 39 255-295 115-153 (491)
344 TIGR01075 uvrD DNA helicase II 93.7 0.21 4.5E-06 54.6 8.2 65 133-205 9-74 (715)
345 TIGR01587 cas3_core CRISPR-ass 93.7 0.054 1.2E-06 53.8 3.4 61 99-162 279-339 (358)
346 COG0593 DnaA ATPase involved i 93.7 0.37 7.9E-06 48.3 9.0 157 256-438 175-343 (408)
347 PF01637 Arch_ATPase: Archaeal 93.6 0.22 4.7E-06 45.6 7.1 56 239-298 105-165 (234)
348 KOG0327|consensus 93.6 0.069 1.5E-06 51.9 3.7 76 68-143 283-358 (397)
349 COG3972 Superfamily I DNA and 93.6 0.29 6.3E-06 49.4 8.1 67 130-204 164-230 (660)
350 PRK11773 uvrD DNA-dependent he 93.6 0.25 5.5E-06 53.9 8.5 65 133-205 14-79 (721)
351 COG1474 CDC6 Cdc6-related prot 93.5 1 2.2E-05 44.8 12.0 26 150-176 43-68 (366)
352 PRK08451 DNA polymerase III su 93.5 0.48 1E-05 49.4 9.8 39 255-295 116-154 (535)
353 PRK11823 DNA repair protein Ra 93.4 0.45 9.7E-06 48.8 9.4 56 145-204 76-131 (446)
354 COG1111 MPH1 ERCC4-like helica 93.3 0.091 2E-06 53.0 4.1 58 83-141 405-468 (542)
355 TIGR03881 KaiC_arch_4 KaiC dom 93.3 0.94 2E-05 41.8 10.8 55 146-204 17-71 (229)
356 TIGR01425 SRP54_euk signal rec 93.2 1.1 2.4E-05 45.4 11.7 59 150-215 101-161 (429)
357 PF03237 Terminase_6: Terminas 93.2 3.1 6.7E-05 40.9 15.1 147 153-313 1-154 (384)
358 PF02572 CobA_CobO_BtuR: ATP:c 93.2 2.2 4.9E-05 37.5 12.2 141 152-307 6-148 (172)
359 PRK14961 DNA polymerase III su 93.2 0.48 1E-05 47.2 9.1 39 255-295 118-156 (363)
360 TIGR03499 FlhF flagellar biosy 93.1 0.28 6.1E-06 47.0 7.1 20 148-167 193-212 (282)
361 PRK13894 conjugal transfer ATP 93.1 0.087 1.9E-06 51.4 3.6 46 146-192 145-190 (319)
362 PRK07994 DNA polymerase III su 93.1 0.45 9.8E-06 50.7 9.1 38 255-294 118-155 (647)
363 PRK10919 ATP-dependent DNA hel 93.1 0.17 3.6E-06 54.8 6.0 65 133-205 7-72 (672)
364 PRK14952 DNA polymerase III su 93.1 0.55 1.2E-05 49.6 9.7 39 255-295 117-155 (584)
365 PRK06904 replicative DNA helic 93.1 0.54 1.2E-05 48.5 9.4 117 146-269 218-347 (472)
366 PRK06645 DNA polymerase III su 92.9 0.77 1.7E-05 47.7 10.3 19 150-168 44-62 (507)
367 TIGR03015 pepcterm_ATPase puta 92.9 1.2 2.6E-05 42.1 11.0 18 150-167 44-61 (269)
368 TIGR00708 cobA cob(I)alamin ad 92.9 1.3 2.8E-05 39.0 10.2 52 255-307 96-149 (173)
369 TIGR00580 mfd transcription-re 92.9 0.66 1.4E-05 51.8 10.4 80 180-268 660-742 (926)
370 TIGR00959 ffh signal recogniti 92.9 1.3 2.7E-05 45.1 11.6 59 150-214 100-160 (428)
371 PRK09112 DNA polymerase III su 92.8 0.6 1.3E-05 46.2 9.1 40 255-296 140-179 (351)
372 PRK14951 DNA polymerase III su 92.8 0.46 1E-05 50.5 8.7 39 255-295 123-161 (618)
373 cd00984 DnaB_C DnaB helicase C 92.8 0.29 6.3E-06 45.5 6.6 49 145-195 9-60 (242)
374 PRK05707 DNA polymerase III su 92.8 0.41 8.8E-06 46.9 7.8 41 255-297 105-145 (328)
375 KOG0391|consensus 92.8 0.24 5.1E-06 54.8 6.5 74 340-413 1260-1346(1958)
376 PRK14963 DNA polymerase III su 92.8 0.48 1E-05 49.3 8.7 17 151-167 38-54 (504)
377 PRK04914 ATP-dependent helicas 92.8 0.19 4E-06 56.0 5.9 45 99-143 547-591 (956)
378 PRK07471 DNA polymerase III su 92.7 0.76 1.7E-05 45.7 9.8 41 255-297 140-180 (365)
379 PRK14955 DNA polymerase III su 92.7 0.77 1.7E-05 46.4 9.9 40 254-295 125-164 (397)
380 PRK08691 DNA polymerase III su 92.7 0.8 1.7E-05 49.0 10.2 39 255-295 118-156 (709)
381 PRK14959 DNA polymerase III su 92.7 0.61 1.3E-05 49.4 9.3 20 150-169 39-58 (624)
382 cd00561 CobA_CobO_BtuR ATP:cor 92.7 1.9 4.2E-05 37.4 11.0 53 254-307 93-147 (159)
383 PRK13851 type IV secretion sys 92.6 0.098 2.1E-06 51.5 3.3 44 146-193 159-202 (344)
384 KOG0738|consensus 92.6 0.6 1.3E-05 45.9 8.3 17 150-166 246-262 (491)
385 PRK10867 signal recognition pa 92.6 1.5 3.3E-05 44.6 11.7 58 150-213 101-160 (433)
386 PRK14965 DNA polymerase III su 92.5 0.83 1.8E-05 48.5 10.2 39 255-295 118-156 (576)
387 PRK13341 recombination factor 92.5 0.77 1.7E-05 49.9 10.0 44 256-305 109-152 (725)
388 PRK05563 DNA polymerase III su 92.4 0.62 1.3E-05 49.2 9.1 43 254-299 117-159 (559)
389 TIGR00767 rho transcription te 92.4 1.1 2.4E-05 44.7 10.2 31 146-177 165-195 (415)
390 cd01121 Sms Sms (bacterial rad 92.4 0.89 1.9E-05 45.4 9.7 55 146-204 79-133 (372)
391 TIGR03600 phage_DnaB phage rep 92.3 0.56 1.2E-05 47.7 8.5 41 145-187 190-230 (421)
392 TIGR01074 rep ATP-dependent DN 92.2 0.39 8.5E-06 52.0 7.5 65 133-205 6-71 (664)
393 PF01695 IstB_IS21: IstB-like 92.2 0.17 3.8E-06 44.9 4.0 48 145-196 43-90 (178)
394 KOG2170|consensus 92.1 0.5 1.1E-05 44.9 7.0 51 258-310 180-237 (344)
395 KOG1133|consensus 92.1 0.089 1.9E-06 54.9 2.3 51 122-174 9-59 (821)
396 PRK08006 replicative DNA helic 92.1 1 2.2E-05 46.4 10.0 142 146-295 221-383 (471)
397 PRK04195 replication factor C 92.1 0.45 9.8E-06 49.3 7.5 18 149-166 39-56 (482)
398 KOG0058|consensus 92.1 0.24 5.1E-06 52.4 5.3 39 254-293 620-658 (716)
399 PRK14957 DNA polymerase III su 92.1 0.9 2E-05 47.6 9.6 39 255-295 118-156 (546)
400 KOG0741|consensus 92.1 1.2 2.5E-05 45.7 9.9 44 255-298 597-649 (744)
401 PRK08939 primosomal protein Dn 92.0 1.1 2.5E-05 43.4 9.8 27 148-175 155-181 (306)
402 TIGR00643 recG ATP-dependent D 92.0 0.13 2.8E-06 55.3 3.5 45 98-142 508-553 (630)
403 PRK10917 ATP-dependent DNA hel 92.0 0.26 5.7E-06 53.4 5.9 44 99-142 532-576 (681)
404 PF05496 RuvB_N: Holliday junc 92.0 0.26 5.7E-06 45.1 4.9 18 150-167 51-68 (233)
405 PHA00729 NTP-binding motif con 91.9 0.87 1.9E-05 41.9 8.3 75 234-308 60-138 (226)
406 PF03668 ATP_bind_2: P-loop AT 91.9 0.61 1.3E-05 44.2 7.4 29 362-390 255-283 (284)
407 cd03115 SRP The signal recogni 91.7 4.2 9E-05 35.5 12.4 54 256-309 82-135 (173)
408 TIGR03714 secA2 accessory Sec 91.7 0.16 3.4E-06 54.9 3.6 46 97-143 471-525 (762)
409 PF00437 T2SE: Type II/IV secr 91.7 0.17 3.8E-06 48.0 3.6 42 148-192 126-167 (270)
410 COG1444 Predicted P-loop ATPas 91.6 0.34 7.3E-06 52.0 6.0 126 151-300 233-358 (758)
411 PF05876 Terminase_GpA: Phage 91.6 0.46 1E-05 50.1 7.0 126 129-270 17-148 (557)
412 PRK05896 DNA polymerase III su 91.6 1.2 2.5E-05 47.1 9.8 39 255-295 118-156 (605)
413 PRK02362 ski2-like helicase; P 91.6 0.17 3.7E-06 55.4 3.9 72 84-156 310-395 (737)
414 cd00079 HELICc Helicase superf 91.5 0.15 3.2E-06 42.1 2.6 55 89-143 68-123 (131)
415 KOG0339|consensus 91.5 0.2 4.3E-06 50.6 3.8 106 65-177 485-590 (731)
416 TIGR02397 dnaX_nterm DNA polym 91.4 0.87 1.9E-05 45.0 8.5 38 255-294 116-153 (355)
417 PRK14701 reverse gyrase; Provi 91.4 0.14 3E-06 60.2 3.1 40 96-135 376-423 (1638)
418 PRK08840 replicative DNA helic 91.4 1.3 2.7E-05 45.7 9.8 41 145-187 213-253 (464)
419 PF01443 Viral_helicase1: Vira 91.4 0.22 4.8E-06 45.9 4.0 14 152-165 1-14 (234)
420 PRK04841 transcriptional regul 91.3 1.5 3.3E-05 49.2 11.2 42 258-300 123-164 (903)
421 PRK13900 type IV secretion sys 91.3 0.2 4.4E-06 49.1 3.7 41 148-192 159-199 (332)
422 PRK06067 flagellar accessory p 91.3 2.3 5E-05 39.3 10.8 55 146-204 22-76 (234)
423 KOG2228|consensus 91.2 2.5 5.4E-05 41.0 10.7 44 241-285 122-165 (408)
424 COG1132 MdlB ABC-type multidru 91.2 1.2 2.6E-05 47.2 9.8 39 255-294 482-520 (567)
425 PRK14969 DNA polymerase III su 91.2 0.89 1.9E-05 47.6 8.5 39 255-295 118-156 (527)
426 PRK09376 rho transcription ter 91.1 1.4 3.1E-05 43.9 9.2 92 110-203 120-221 (416)
427 COG4962 CpaF Flp pilus assembl 91.0 0.099 2.2E-06 50.6 1.2 50 142-195 165-215 (355)
428 PRK05748 replicative DNA helic 91.0 1 2.3E-05 46.2 8.8 116 145-269 199-327 (448)
429 PRK07004 replicative DNA helic 91.0 0.55 1.2E-05 48.3 6.7 142 146-296 210-372 (460)
430 PRK14948 DNA polymerase III su 91.0 0.82 1.8E-05 48.8 8.2 38 255-294 120-157 (620)
431 PLN02165 adenylate isopentenyl 91.0 0.19 4.1E-06 49.0 3.1 39 123-167 23-61 (334)
432 PRK14954 DNA polymerase III su 90.9 1.6 3.5E-05 46.5 10.2 40 254-295 125-164 (620)
433 KOG0742|consensus 90.9 1.4 3.1E-05 43.7 8.9 29 384-412 572-600 (630)
434 PRK14712 conjugal transfer nic 90.9 0.76 1.6E-05 53.7 8.2 58 132-196 839-900 (1623)
435 COG2805 PilT Tfp pilus assembl 90.9 0.29 6.3E-06 46.5 4.1 27 151-178 127-153 (353)
436 PF03969 AFG1_ATPase: AFG1-lik 90.8 1.3 2.8E-05 44.0 8.9 111 147-301 60-171 (362)
437 KOG1016|consensus 90.8 2 4.4E-05 45.8 10.3 147 149-302 282-477 (1387)
438 TIGR02868 CydC thiol reductant 90.7 1.8 3.8E-05 45.5 10.4 21 145-165 357-377 (529)
439 PRK12900 secA preprotein trans 90.7 0.19 4.2E-06 55.2 3.1 53 91-143 639-699 (1025)
440 PHA03372 DNA packaging termina 90.6 2 4.3E-05 45.0 10.1 125 149-297 202-336 (668)
441 cd01126 TraG_VirD4 The TraG/Tr 90.6 0.19 4.1E-06 50.5 2.9 48 151-203 1-48 (384)
442 COG1219 ClpX ATP-dependent pro 90.6 0.21 4.5E-06 47.8 2.8 21 147-167 95-115 (408)
443 TIGR02525 plasmid_TraJ plasmid 90.5 0.36 7.9E-06 48.0 4.7 42 149-191 149-190 (372)
444 PRK14950 DNA polymerase III su 90.5 0.82 1.8E-05 48.6 7.7 39 254-294 118-156 (585)
445 cd01131 PilT Pilus retraction 90.5 0.36 7.7E-06 43.6 4.4 38 152-191 4-41 (198)
446 TIGR03877 thermo_KaiC_1 KaiC d 90.5 0.47 1E-05 44.2 5.2 55 146-204 18-72 (237)
447 TIGR03158 cas3_cyano CRISPR-as 90.5 0.19 4.2E-06 49.9 2.7 40 98-140 318-357 (357)
448 COG2804 PulE Type II secretory 90.4 0.29 6.3E-06 49.8 4.0 26 151-177 260-285 (500)
449 PRK07399 DNA polymerase III su 90.4 1.9 4E-05 42.1 9.5 58 235-296 104-161 (314)
450 TIGR01970 DEAH_box_HrpB ATP-de 90.4 0.21 4.5E-06 55.0 3.1 44 99-142 263-324 (819)
451 COG2256 MGS1 ATPase related to 90.3 1.4 2.9E-05 43.7 8.3 19 150-168 49-67 (436)
452 PF02534 T4SS-DNA_transf: Type 90.3 0.32 6.8E-06 50.3 4.3 49 150-203 45-93 (469)
453 PRK08769 DNA polymerase III su 90.3 3.6 7.8E-05 40.1 11.3 41 255-297 112-152 (319)
454 TIGR01073 pcrA ATP-dependent D 90.3 0.9 2E-05 49.7 8.0 65 133-205 9-74 (726)
455 COG2109 BtuR ATP:corrinoid ade 90.3 6.6 0.00014 34.9 11.7 52 255-307 121-174 (198)
456 TIGR02237 recomb_radB DNA repa 90.2 4 8.6E-05 36.9 11.1 40 147-189 10-49 (209)
457 PRK11664 ATP-dependent RNA hel 90.2 0.22 4.8E-06 54.8 3.1 44 99-142 266-327 (812)
458 KOG1131|consensus 90.2 0.64 1.4E-05 47.2 6.0 86 112-203 3-90 (755)
459 PRK13709 conjugal transfer nic 90.1 1.1 2.5E-05 53.0 8.8 58 131-195 970-1031(1747)
460 COG3973 Superfamily I DNA and 90.0 0.6 1.3E-05 48.4 5.8 58 148-205 225-285 (747)
461 PRK07414 cob(I)yrinic acid a,c 90.0 9.6 0.00021 33.7 12.6 52 255-307 114-167 (178)
462 PF03796 DnaB_C: DnaB-like hel 89.9 0.86 1.9E-05 43.0 6.6 141 146-297 16-179 (259)
463 PRK10689 transcription-repair 89.9 2.7 5.8E-05 48.3 11.4 80 180-268 809-891 (1147)
464 COG3267 ExeA Type II secretory 89.9 3.8 8.3E-05 38.2 10.4 32 142-174 43-75 (269)
465 KOG0743|consensus 89.8 0.29 6.3E-06 49.0 3.3 64 78-174 196-259 (457)
466 TIGR00665 DnaB replicative DNA 89.7 1.9 4.1E-05 44.1 9.4 40 146-187 192-231 (434)
467 PRK13897 type IV secretion sys 89.7 0.38 8.2E-06 51.0 4.3 49 150-203 159-207 (606)
468 KOG1513|consensus 89.6 0.26 5.7E-06 52.3 2.9 133 152-297 292-453 (1300)
469 TIGR00631 uvrb excinuclease AB 89.6 0.34 7.4E-06 52.0 3.9 44 99-142 493-541 (655)
470 PTZ00293 thymidine kinase; Pro 89.5 2.8 6.1E-05 38.1 9.2 40 149-191 4-43 (211)
471 TIGR01420 pilT_fam pilus retra 89.4 0.53 1.2E-05 46.5 4.9 42 149-192 122-163 (343)
472 PRK07133 DNA polymerase III su 89.4 2 4.3E-05 46.4 9.3 39 255-295 117-155 (725)
473 PRK08058 DNA polymerase III su 89.2 2.4 5.3E-05 41.6 9.3 41 254-296 108-148 (329)
474 PRK10416 signal recognition pa 89.0 7.3 0.00016 38.0 12.4 56 255-310 195-256 (318)
475 COG1199 DinG Rad3-related DNA 89.0 2.9 6.3E-05 45.2 10.6 68 343-415 469-537 (654)
476 PRK14873 primosome assembly pr 89.0 2.2 4.8E-05 45.9 9.5 66 339-404 171-240 (665)
477 TIGR02655 circ_KaiC circadian 88.9 3.5 7.5E-05 42.8 10.7 52 149-204 263-314 (484)
478 PF10412 TrwB_AAD_bind: Type I 88.9 0.52 1.1E-05 47.4 4.5 53 142-197 8-60 (386)
479 PRK09435 membrane ATPase/prote 88.6 12 0.00025 36.8 13.4 15 151-165 58-72 (332)
480 KOG0346|consensus 88.6 0.32 6.9E-06 48.3 2.5 49 107-158 362-410 (569)
481 PRK06305 DNA polymerase III su 88.5 3 6.6E-05 42.8 9.8 39 255-295 120-158 (451)
482 TIGR02639 ClpA ATP-dependent C 88.5 3.4 7.4E-05 45.3 10.8 19 149-167 203-221 (731)
483 PRK11034 clpA ATP-dependent Cl 88.4 2.6 5.6E-05 46.2 9.6 19 149-167 207-225 (758)
484 PRK06871 DNA polymerase III su 88.4 3.2 6.9E-05 40.6 9.4 41 255-297 106-146 (325)
485 PRK06321 replicative DNA helic 88.4 1.7 3.6E-05 44.9 7.9 113 147-269 224-349 (472)
486 PRK11131 ATP-dependent RNA hel 88.3 0.33 7.3E-06 55.3 2.9 45 99-143 338-400 (1294)
487 PRK06964 DNA polymerase III su 88.3 2.6 5.7E-05 41.5 8.8 41 255-297 131-171 (342)
488 PRK06647 DNA polymerase III su 88.2 2.4 5.2E-05 44.8 9.0 38 254-293 117-154 (563)
489 PRK08760 replicative DNA helic 88.2 1.9 4.2E-05 44.6 8.2 114 146-269 226-352 (476)
490 TIGR02524 dot_icm_DotB Dot/Icm 88.1 0.66 1.4E-05 46.1 4.5 39 148-187 133-172 (358)
491 KOG2227|consensus 88.1 4.1 8.8E-05 41.3 9.9 51 147-198 173-224 (529)
492 PRK08506 replicative DNA helic 87.9 2.1 4.6E-05 44.2 8.3 114 146-269 189-315 (472)
493 TIGR02012 tigrfam_recA protein 87.9 1.1 2.4E-05 43.6 5.8 46 145-193 51-96 (321)
494 TIGR00763 lon ATP-dependent pr 87.8 1.9 4.1E-05 47.6 8.3 19 148-166 346-364 (775)
495 PRK00254 ski2-like helicase; P 87.7 0.49 1.1E-05 51.8 3.7 57 100-157 323-387 (720)
496 TIGR03346 chaperone_ClpB ATP-d 87.7 3.9 8.4E-05 45.7 10.7 19 149-167 194-212 (852)
497 cd01127 TrwB Bacterial conjuga 87.6 0.57 1.2E-05 47.5 3.9 51 142-195 35-85 (410)
498 PRK09165 replicative DNA helic 87.5 3.5 7.7E-05 42.9 9.7 117 146-269 214-354 (497)
499 PF08423 Rad51: Rad51; InterP 87.5 0.85 1.8E-05 43.0 4.7 39 152-190 41-82 (256)
500 PRK10865 protein disaggregatio 87.4 3.6 7.8E-05 45.9 10.2 19 149-167 199-217 (857)
No 1
>KOG0329|consensus
Probab=100.00 E-value=1.6e-60 Score=421.61 Aligned_cols=372 Identities=69% Similarity=1.022 Sum_probs=334.0
Q ss_pred ccccCCCccccccccccccccchhhhhhhhccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCccccccee
Q psy1548 40 NDDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNI 119 (448)
Q Consensus 40 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~ 119 (448)
.++++||+++++...... +....+....+|.|++.|++||+++.++|++++++.++|
T Consensus 5 e~dlldyeeeee~~~~~~---~~~~~~~~d~kgsyv~ihssgfrdfllkpellraivdcg-------------------- 61 (387)
T KOG0329|consen 5 EEDLLDYEEEEEEQADQE---SAPAGPKKDKKGSYVSIHSSGFRDFLLKPELLRAIVDCG-------------------- 61 (387)
T ss_pred hhhhhcccccccccCCcc---CCCCCccccccCcEEEEeccchhhhhcCHHHHHHHHhcc--------------------
Confidence 568999988775544322 122234567889999999999999999999999999999
Q ss_pred EeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHH
Q psy1548 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199 (448)
Q Consensus 120 v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 199 (448)
|++|+.+ |++ |||.+..|.|++++|.+|+|||++|.++.|+++++.++...++++|+||+||.|+.+.
T Consensus 62 ---fehpsev---qhe------cipqailgmdvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~e 129 (387)
T KOG0329|consen 62 ---FEHPSEV---QHE------CIPQAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKE 129 (387)
T ss_pred ---CCCchHh---hhh------hhhHHhhcchhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHH
Confidence 9999999 999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHH
Q psy1548 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ 279 (448)
Q Consensus 200 ~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~ 279 (448)
+.+|++++|++++.+++||.++..+...+++ +|+|+|+||++++.+.+++.+++++++.+|+||||.|+++.+++.+++
T Consensus 130 y~rfskymP~vkvaVFfGG~~Ikkdee~lk~-~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQ 208 (387)
T KOG0329|consen 130 YERFSKYMPSVKVSVFFGGLFIKKDEELLKN-CPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQ 208 (387)
T ss_pred HHHHHhhCCCceEEEEEcceeccccHHHHhC-CCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999988 699999999999999999999999999999999999999989999999
Q ss_pred HHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEE
Q psy1548 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVI 359 (448)
Q Consensus 280 ~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~II 359 (448)
++++..|+.+|+++||||++++++..+++||.+|..++++++...+.+++.|+|+.+++.+|...+.++++....++++|
T Consensus 209 Eifr~tp~~KQvmmfsatlskeiRpvC~kFmQdPmEi~vDdE~KLtLHGLqQ~YvkLke~eKNrkl~dLLd~LeFNQVvI 288 (387)
T KOG0329|consen 209 EIFRMTPHEKQVMMFSATLSKEIRPVCHKFMQDPMEIFVDDEAKLTLHGLQQYYVKLKENEKNRKLNDLLDVLEFNQVVI 288 (387)
T ss_pred HHhhcCcccceeeeeeeecchhhHHHHHhhhcCchhhhccchhhhhhhhHHHHHHhhhhhhhhhhhhhhhhhhhhcceeE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECccHHHHH----HHHHHHhCCCc----EEEEeCCCCHHH---HHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHh
Q psy1548 360 FVKSVTRCIA----LSTLLSEQNFP----AVSIHRGMTQEE---RLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRF 428 (448)
Q Consensus 360 F~~s~~~a~~----l~~~L~~~g~~----~~~lh~~~~~~e---R~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~ 428 (448)
|+.++.+... ++..|-.+|++ -+.++-+|+.+- -.++-+.=+-|.+|.+|+|+++..|...|+.++++|
T Consensus 289 FvKsv~Rl~f~kr~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrfGtkglaitfvs~e~da~iLn~vqdRf 368 (387)
T KOG0329|consen 289 FVKSVQRLSFQKRLVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNPVQDRF 368 (387)
T ss_pred eeehhhhhhhhhhhHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhccccccceeehhcchhhHHHhchhhHhh
Confidence 9999887442 44444444543 356677887643 233333334466999999999999999999999999
Q ss_pred cCCCCCCCccccccccccC
Q psy1548 429 DVSISELPDEIDLSTYIEG 447 (448)
Q Consensus 429 ~~~~~~~p~~~~~~~~~~~ 447 (448)
++.|.+||+.++.++|+++
T Consensus 369 ~v~i~eLpdeid~s~y~~~ 387 (387)
T KOG0329|consen 369 EVNIKELPDEIDFSTYEKT 387 (387)
T ss_pred hccHhhcCcccchhhhhcC
Confidence 9999999999999998874
No 2
>KOG0328|consensus
Probab=100.00 E-value=7.1e-56 Score=397.31 Aligned_cols=324 Identities=34% Similarity=0.573 Sum_probs=311.0
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
.+.|++++++.++++++...| |+.|+.+ |+. ++|.+++|+||+.++.+
T Consensus 26 ~~~F~~Mgl~edlLrgiY~yG-----------------------fekPS~I---Qqr------Ai~~IlkGrdViaQaqS 73 (400)
T KOG0328|consen 26 IPTFDDMGLKEDLLRGIYAYG-----------------------FEKPSAI---QQR------AIPQILKGRDVIAQAQS 73 (400)
T ss_pred ccchhhcCchHHHHHHHHHhc-----------------------cCCchHH---Hhh------hhhhhhcccceEEEecC
Confidence 457999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|+|||.+|.+.+|+.+.-..+..++++++|||+|+.|+.+.+..++.++ ++.+..+.||.+..++...+..+ .+++.|
T Consensus 74 GTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~m-nvq~hacigg~n~gedikkld~G-~hvVsG 151 (400)
T KOG0328|consen 74 GTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYM-NVQCHACIGGKNLGEDIKKLDYG-QHVVSG 151 (400)
T ss_pred CCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccc-cceEEEEecCCccchhhhhhccc-ceEeeC
Confidence 9999999999999998887778899999999999999999999999999 99999999999998888888865 899999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||++++++++++.+.-+.++++|+||||.|++. +|..++-.+++++|+..|++++|||+|.++.+...+|+.+|+.+.+
T Consensus 152 tPGrv~dmikr~~L~tr~vkmlVLDEaDemL~k-gfk~Qiydiyr~lp~~~Qvv~~SATlp~eilemt~kfmtdpvrilv 230 (400)
T KOG0328|consen 152 TPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNK-GFKEQIYDIYRYLPPGAQVVLVSATLPHEILEMTEKFMTDPVRILV 230 (400)
T ss_pred CCchHHHHHHhccccccceeEEEeccHHHHHHh-hHHHHHHHHHHhCCCCceEEEEeccCcHHHHHHHHHhcCCceeEEE
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred cCcccccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 319 DDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 319 ~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
..+ ..+..+++++|+.++.++ |++.|.++.+.+.-.+.+|||||+..+..|.+.|++.++.+..+||+|+++||.+++
T Consensus 231 krd-eltlEgIKqf~v~ve~EewKfdtLcdLYd~LtItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im 309 (400)
T KOG0328|consen 231 KRD-ELTLEGIKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIM 309 (400)
T ss_pred ecC-CCchhhhhhheeeechhhhhHhHHHHHhhhhehheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHH
Confidence 888 788899999999998876 999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
++|++|+ +|++|.|+.++ |...+++||+.+...
T Consensus 310 ~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFGRkGvainFVk~~-d~~~lrdieq~yst~ 388 (400)
T KOG0328|consen 310 NDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGVAINFVKSD-DLRILRDIEQYYSTQ 388 (400)
T ss_pred HHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccCCcceEEEEecHH-HHHHHHHHHHHHhhh
Confidence 9999999 89999999877 899999999999999
Q ss_pred CCCCCccc
Q psy1548 432 ISELPDEI 439 (448)
Q Consensus 432 ~~~~p~~~ 439 (448)
+.++|-++
T Consensus 389 i~emp~nv 396 (400)
T KOG0328|consen 389 IDEMPMNV 396 (400)
T ss_pred cccccchh
Confidence 99999874
No 3
>KOG0330|consensus
Probab=100.00 E-value=1.3e-55 Score=411.61 Aligned_cols=323 Identities=29% Similarity=0.488 Sum_probs=308.8
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
..+|.++++.+++++++++.+ |..|+++ |++ +||.++.|+|+|+.|.|
T Consensus 60 ~~sf~dLgv~~~L~~ac~~l~-----------------------~~~PT~I---Q~~------aiP~~L~g~dvIglAeT 107 (476)
T KOG0330|consen 60 FKSFADLGVHPELLEACQELG-----------------------WKKPTKI---QSE------AIPVALGGRDVIGLAET 107 (476)
T ss_pred hcchhhcCcCHHHHHHHHHhC-----------------------cCCCchh---hhh------hcchhhCCCcEEEEecc
Confidence 357999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||.+|++|+++.+...+..++++|++||||||.|+.+.+..++... ++++.++.||.+...+...+.+. |||+|+
T Consensus 108 GSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~i-glr~~~lvGG~~m~~q~~~L~kk-PhilVa 185 (476)
T KOG0330|consen 108 GSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGI-GLRVAVLVGGMDMMLQANQLSKK-PHILVA 185 (476)
T ss_pred CCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhcccc-CeEEEEEecCchHHHHHHHhhcC-CCEEEe
Confidence 9999999999999999998888999999999999999999999999988 99999999999999998888886 999999
Q ss_pred cHHHHHHHHH-CCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 239 TPGRILALVR-NKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 239 Tp~~l~~~l~-~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
||++|.+++. .+.+++..++++|+||||++++. +|...+..|++.+|..+|+++|||||+..+.++....+.+|..+.
T Consensus 186 TPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~ip~erqt~LfsATMt~kv~kL~rasl~~p~~v~ 264 (476)
T KOG0330|consen 186 TPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKVIPRERQTFLFSATMTKKVRKLQRASLDNPVKVA 264 (476)
T ss_pred CcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHhcCccceEEEEEeecchhhHHHHhhccCCCeEEe
Confidence 9999999998 58899999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
+... ..+.++++|+|+.++...|...|..+++...++++||||++...++.++-.|+..|+.+..+||.|++..|..++
T Consensus 265 ~s~k-y~tv~~lkQ~ylfv~~k~K~~yLV~ll~e~~g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l 343 (476)
T KOG0330|consen 265 VSSK-YQTVDHLKQTYLFVPGKDKDTYLVYLLNELAGNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGAL 343 (476)
T ss_pred ccch-hcchHHhhhheEeccccccchhHHHHHHhhcCCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHH
Confidence 8877 678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
+.|++|. +|.+|+|+|.. |.+...+||..++++
T Consensus 344 ~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaGrsG~~ItlVtqy-Dve~~qrIE~~~gkk 422 (476)
T KOG0330|consen 344 NKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAGRSGKAITLVTQY-DVELVQRIEHALGKK 422 (476)
T ss_pred HHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccCCCcceEEEEehh-hhHHHHHHHHHHhcC
Confidence 9999998 89999999986 999999999999998
Q ss_pred CCCCCcc
Q psy1548 432 ISELPDE 438 (448)
Q Consensus 432 ~~~~p~~ 438 (448)
..+.+-.
T Consensus 423 l~~~~~~ 429 (476)
T KOG0330|consen 423 LPEYKVD 429 (476)
T ss_pred CCccCcc
Confidence 8774433
No 4
>KOG0326|consensus
Probab=100.00 E-value=5e-55 Score=397.88 Aligned_cols=330 Identities=31% Similarity=0.506 Sum_probs=316.1
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
...+|+++.+..+++.++.+.| |+.|+|+ |.+ +||.++.|+|++..|.
T Consensus 83 kG~efEd~~Lkr~LLmgIfe~G-----------------------~ekPSPi---Qee------sIPiaLtGrdiLaRaK 130 (459)
T KOG0326|consen 83 KGNEFEDYCLKRELLMGIFEKG-----------------------FEKPSPI---QEE------SIPIALTGRDILARAK 130 (459)
T ss_pred cCccHHHhhhhHHHHHHHHHhc-----------------------cCCCCCc---ccc------ccceeecchhhhhhcc
Confidence 3457999999999999999999 9999999 999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
.|+|||.+|.+|+|..+.......+++|++|||+||.|+.+.++.+++.+ ++++.+.+||++..+++..+... .|++|
T Consensus 131 NGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~-~i~vmvttGGT~lrDDI~Rl~~~-VH~~v 208 (459)
T KOG0326|consen 131 NGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHL-GIKVMVTTGGTSLRDDIMRLNQT-VHLVV 208 (459)
T ss_pred CCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhccc-CeEEEEecCCcccccceeeecCc-eEEEE
Confidence 99999999999999999999899999999999999999999999999999 89999999999998888777765 89999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||++++++.+++...++++.++|+||||.+++. +|...++.++..+|+++|++++|||+|-.+..+..+++++|..|.
T Consensus 209 gTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~lP~~rQillySATFP~tVk~Fm~~~l~kPy~IN 287 (459)
T KOG0326|consen 209 GTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISFLPKERQILLYSATFPLTVKGFMDRHLKKPYEIN 287 (459)
T ss_pred cCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHhCCccceeeEEecccchhHHHHHHHhccCcceee
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999998
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
.-.+ .++.++.|+|.++.+.+|...|..+...+.-++.||||||..++|.+|+.+.+.|+.|.++|+.|-+++|.+++
T Consensus 288 LM~e--Ltl~GvtQyYafV~e~qKvhCLntLfskLqINQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVF 365 (459)
T KOG0326|consen 288 LMEE--LTLKGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVF 365 (459)
T ss_pred hhhh--hhhcchhhheeeechhhhhhhHHHHHHHhcccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhh
Confidence 7666 78899999999999999999999999999889999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
++|++|+ -|++|+++|.+ |+..|.+||+.++.+
T Consensus 366 HdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlGlAInLitye-drf~L~~IE~eLGtE 444 (459)
T KOG0326|consen 366 HDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLGLAINLITYE-DRFNLYRIEQELGTE 444 (459)
T ss_pred hhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcceEEEEEehh-hhhhHHHHHHHhccc
Confidence 9999998 79999999877 899999999999999
Q ss_pred CCCCCccccccccc
Q psy1548 432 ISELPDEIDLSTYI 445 (448)
Q Consensus 432 ~~~~p~~~~~~~~~ 445 (448)
|+++|..+|...|.
T Consensus 445 I~pip~~iDk~lyv 458 (459)
T KOG0326|consen 445 IKPIPSNIDKSLYV 458 (459)
T ss_pred cccCCCcCCccccc
Confidence 99999999987663
No 5
>KOG0331|consensus
Probab=100.00 E-value=4.8e-54 Score=425.80 Aligned_cols=332 Identities=28% Similarity=0.448 Sum_probs=306.1
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
....|.++++++++...+...+ |..|++| |.+ .||.++.|+|++..|.
T Consensus 89 ~~~~f~~~~ls~~~~~~lk~~g-----------------------~~~PtpI---Qaq------~wp~~l~GrD~v~iA~ 136 (519)
T KOG0331|consen 89 SSAAFQELGLSEELMKALKEQG-----------------------FEKPTPI---QAQ------GWPIALSGRDLVGIAR 136 (519)
T ss_pred cchhhhcccccHHHHHHHHhcC-----------------------CCCCchh---hhc------ccceeccCCceEEEec
Confidence 4458999999999999999999 9999999 999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhc------cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcC
Q psy1548 158 SGMGKTAVFVLATLQQLET------TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 231 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~ 231 (448)
||||||++|++|++.++.. ...++++|||+||||||.|+...+..++..+ .+++.+++||.+...|...+.++
T Consensus 137 TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~~~-~~~~~cvyGG~~~~~Q~~~l~~g 215 (519)
T KOG0331|consen 137 TGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGKSL-RLRSTCVYGGAPKGPQLRDLERG 215 (519)
T ss_pred cCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcCCC-CccEEEEeCCCCccHHHHHHhcC
Confidence 9999999999999999875 3457899999999999999999999999988 79999999999999999999997
Q ss_pred CCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 232 NPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 232 ~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
.+|+|+||+++.++++.+.++++++.++|+||||+|++. +|.++++.|+..+ ++.+|++++|||||..++.++..|+
T Consensus 216 -vdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldm-GFe~qI~~Il~~i~~~~rQtlm~saTwp~~v~~lA~~fl 293 (519)
T KOG0331|consen 216 -VDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDM-GFEPQIRKILSQIPRPDRQTLMFSATWPKEVRQLAEDFL 293 (519)
T ss_pred -CcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhcc-ccHHHHHHHHHhcCCCcccEEEEeeeccHHHHHHHHHHh
Confidence 999999999999999999999999999999999999998 9999999999999 5566899999999999999999999
Q ss_pred CCCeEEEEcCc-ccccccceeEEEEEcCcchHHHHHHHHHhhC---CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC
Q psy1548 311 HDPMEVYVDDE-AKLTLHGLQQHYVKLKENEKNKKLFELLDVL---EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386 (448)
Q Consensus 311 ~~~~~i~~~~~-~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~---~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~ 386 (448)
.+|..+.+... ......++.|....++...|...|..+|... ..+|+||||+|++.|+.|+..|+..++++..+||
T Consensus 294 ~~~~~i~ig~~~~~~a~~~i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHG 373 (519)
T KOG0331|consen 294 NNPIQINVGNKKELKANHNIRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHG 373 (519)
T ss_pred cCceEEEecchhhhhhhcchhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecc
Confidence 99999988754 4567788999999999889999998888776 4669999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 387 GMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+.++.+|..+|+.|++|+. .|+++|+-.-+++ +|.+.--+-.+++|.+.+.|.++.||
T Consensus 374 d~sQ~eR~~~L~~FreG~~--~vLVATdVAaRGL--Di~dV~lVInydfP~~vEdYVHRiGR 431 (519)
T KOG0331|consen 374 DKSQSERDWVLKGFREGKS--PVLVATDVAARGL--DVPDVDLVINYDFPNNVEDYVHRIGR 431 (519)
T ss_pred cccHHHHHHHHHhcccCCc--ceEEEcccccccC--CCccccEEEeCCCCCCHHHHHhhcCc
Confidence 9999999999999999995 7888888655554 56666667788999999999999998
No 6
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=7.5e-52 Score=425.63 Aligned_cols=331 Identities=33% Similarity=0.530 Sum_probs=305.6
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
..|.++++++.+++++.+.| |..|+++ |.+ +||.++.|+|++++|+||
T Consensus 29 ~~F~~l~l~~~ll~~l~~~g-----------------------f~~pt~I---Q~~------~IP~~l~g~Dvi~~A~TG 76 (513)
T COG0513 29 PEFASLGLSPELLQALKDLG-----------------------FEEPTPI---QLA------AIPLILAGRDVLGQAQTG 76 (513)
T ss_pred CCHhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCCC
Confidence 67999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhc--cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 160 MGKTAVFVLATLQQLET--TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
||||++|++|+++.+.. ......+||++||||||.|+++.+..+....+++++..++||.+...+...+..+ ++|+|
T Consensus 77 sGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~~~~~q~~~l~~~-~~ivV 155 (513)
T COG0513 77 TGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGVSIRKQIEALKRG-VDIVV 155 (513)
T ss_pred ChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCCCHHHHHHHHhcC-CCEEE
Confidence 99999999999999873 2222229999999999999999999999987568899999999999999888886 99999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||+++++++..+.+++++++++|+||||+|++. +|.+++..++..+|.+.|+++||||+|..+..+.+.++.+|..+.
T Consensus 156 aTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~-Gf~~~i~~I~~~~p~~~qtllfSAT~~~~i~~l~~~~l~~p~~i~ 234 (513)
T COG0513 156 ATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDM-GFIDDIEKILKALPPDRQTLLFSATMPDDIRELARRYLNDPVEIE 234 (513)
T ss_pred ECccHHHHHHHcCCcchhhcCEEEeccHhhhhcC-CCHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHccCCcEEE
Confidence 9999999999999999999999999999999998 999999999999999999999999999999999999999999888
Q ss_pred EcCcc-cccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy1548 318 VDDEA-KLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395 (448)
Q Consensus 318 ~~~~~-~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~ 395 (448)
+.... ..+...+.|+++.+...+ |...|..+++.....++||||+|+..|+.|+..|...|+++..+||+|++++|.+
T Consensus 235 v~~~~~~~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~~~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~ 314 (513)
T COG0513 235 VSVEKLERTLKKIKQFYLEVESEEEKLELLLKLLKDEDEGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDR 314 (513)
T ss_pred EccccccccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHH
Confidence 87442 237889999999999876 9999999999988889999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 396 KYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 396 ~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++.|++|+ ..|+++|+-.-+++ +|.+.-.+-..++|.+.+.+.++.||
T Consensus 315 ~l~~F~~g~--~~vLVaTDvaaRGi--Di~~v~~VinyD~p~~~e~yvHRiGR 363 (513)
T COG0513 315 ALEKFKDGE--LRVLVATDVAARGL--DIPDVSHVINYDLPLDPEDYVHRIGR 363 (513)
T ss_pred HHHHHHcCC--CCEEEEechhhccC--CccccceeEEccCCCCHHHheeccCc
Confidence 999999877 68999998755555 67777778889999999999999998
No 7
>KOG0338|consensus
Probab=100.00 E-value=2.1e-50 Score=387.59 Aligned_cols=329 Identities=29% Similarity=0.495 Sum_probs=300.7
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.+|.+|.|+..+++++...| |..|+|| |.. +||.++.|+|++.+|.||
T Consensus 181 ~sF~~mNLSRPlLka~~~lG-----------------------y~~PTpI---Q~a------~IPvallgkDIca~A~TG 228 (691)
T KOG0338|consen 181 ESFQSMNLSRPLLKACSTLG-----------------------YKKPTPI---QVA------TIPVALLGKDICACAATG 228 (691)
T ss_pred hhHHhcccchHHHHHHHhcC-----------------------CCCCCch---hhh------cccHHhhcchhhheeccc
Confidence 47999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCC---CeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 160 MGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
||||.+|++|+|.++...+. ..++|||||||+|+.|++.+.++++.+. ++.++++.||.+...|...|+.. |+|+
T Consensus 229 sGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt-~I~~~L~vGGL~lk~QE~~LRs~-PDIV 306 (691)
T KOG0338|consen 229 SGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT-DITVGLAVGGLDLKAQEAVLRSR-PDIV 306 (691)
T ss_pred CCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc-cceeeeeecCccHHHHHHHHhhC-CCEE
Confidence 99999999999999977654 3689999999999999999999999998 89999999999999999999886 9999
Q ss_pred EEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 237 VGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 237 V~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
|+||+++.+++++ ..++++++..+|+||||+|++. +|..++.+|++.+|+++|.++|||||+..+++++.-.+..|+.
T Consensus 307 IATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~lcpk~RQTmLFSATMteeVkdL~slSL~kPvr 385 (691)
T KOG0338|consen 307 IATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRLCPKNRQTMLFSATMTEEVKDLASLSLNKPVR 385 (691)
T ss_pred EecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHhccccccceeehhhhHHHHHHHHHhhcCCCeE
Confidence 9999999999977 5788999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred EEEcCcccccccceeEEEEEcCc---chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Q psy1548 316 VYVDDEAKLTLHGLQQHYVKLKE---NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392 (448)
Q Consensus 316 i~~~~~~~~~~~~i~~~~~~~~~---~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~e 392 (448)
+.+++. ......+.|.|+.+.+ ..+...|..++...-..++|||+.|++.|..+.-.|--.|+++.-+||.+++++
T Consensus 386 ifvd~~-~~~a~~LtQEFiRIR~~re~dRea~l~~l~~rtf~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~Q 464 (691)
T KOG0338|consen 386 IFVDPN-KDTAPKLTQEFIRIRPKREGDREAMLASLITRTFQDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQ 464 (691)
T ss_pred EEeCCc-cccchhhhHHHheeccccccccHHHHHHHHHHhcccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHH
Confidence 999888 6677888888887664 357788888887766678999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 393 RLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 393 R~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|.+.++.|++++ +.++++|+-..+++ +|+..--+..+..|..++.|.++.||
T Consensus 465 RlesL~kFk~~e--idvLiaTDvAsRGL--DI~gV~tVINy~mP~t~e~Y~HRVGR 516 (691)
T KOG0338|consen 465 RLESLEKFKKEE--IDVLIATDVASRGL--DIEGVQTVINYAMPKTIEHYLHRVGR 516 (691)
T ss_pred HHHHHHHHHhcc--CCEEEEechhhccC--CccceeEEEeccCchhHHHHHHHhhh
Confidence 999999999988 78999988755554 56655556677889998888888877
No 8
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.1e-49 Score=402.82 Aligned_cols=329 Identities=30% Similarity=0.498 Sum_probs=300.6
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.+|.++++++.+++++.+.| |..|+++ |++ +||.++.|+|++++||||
T Consensus 4 ~~f~~l~l~~~l~~~l~~~g-----------------------~~~~t~i---Q~~------ai~~~l~g~dvi~~a~TG 51 (460)
T PRK11776 4 TAFSTLPLPPALLANLNELG-----------------------YTEMTPI---QAQ------SLPAILAGKDVIAQAKTG 51 (460)
T ss_pred CChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCCCEEEECCCC
Confidence 57999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
||||++|++|+++.+......+++||++||++|+.|+.+.++.+....+++++..++|+.+...+...+..+ ++|+|+|
T Consensus 52 sGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~~~v~~~~Gg~~~~~~~~~l~~~-~~IvV~T 130 (460)
T PRK11776 52 SGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPNIKVLTLCGGVPMGPQIDSLEHG-AHIIVGT 130 (460)
T ss_pred CcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCCcEEEEEECCCChHHHHHHhcCC-CCEEEEC
Confidence 999999999999998766666789999999999999999999998776689999999999988887777764 8999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++.+++.++.+.+++++++|+||||+|++. +|...+..++..++...|++++|||+++.+..+...++.+|..+.+.
T Consensus 131 p~rl~~~l~~~~~~l~~l~~lViDEad~~l~~-g~~~~l~~i~~~~~~~~q~ll~SAT~~~~~~~l~~~~~~~~~~i~~~ 209 (460)
T PRK11776 131 PGRILDHLRKGTLDLDALNTLVLDEADRMLDM-GFQDAIDAIIRQAPARRQTLLFSATYPEGIAAISQRFQRDPVEVKVE 209 (460)
T ss_pred hHHHHHHHHcCCccHHHCCEEEEECHHHHhCc-CcHHHHHHHHHhCCcccEEEEEEecCcHHHHHHHHHhcCCCEEEEEC
Confidence 99999999998889999999999999999998 99999999999999999999999999999999999999999988876
Q ss_pred CcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q psy1548 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~ 399 (448)
... ....+.++++.+....|...+..++.....+++||||++++.|+.+++.|++.|+.+..+||+|++.+|..+++.
T Consensus 210 ~~~--~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~ 287 (460)
T PRK11776 210 STH--DLPAIEQRFYEVSPDERLPALQRLLLHHQPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVR 287 (460)
T ss_pred cCC--CCCCeeEEEEEeCcHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Confidence 652 345688999999988899999999988888899999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 400 FKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 400 F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|++|+ ..|+++|+...+++ +|.+.-.+-..++|.+.+.+.++.||
T Consensus 288 F~~g~--~~vLVaTdv~~rGi--Di~~v~~VI~~d~p~~~~~yiqR~GR 332 (460)
T PRK11776 288 FANRS--CSVLVATDVAARGL--DIKALEAVINYELARDPEVHVHRIGR 332 (460)
T ss_pred HHcCC--CcEEEEeccccccc--chhcCCeEEEecCCCCHhHhhhhccc
Confidence 99987 57888887655554 56666667778999999999999998
No 9
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=2.7e-48 Score=402.88 Aligned_cols=335 Identities=26% Similarity=0.407 Sum_probs=302.2
Q ss_pred cCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCc
Q psy1548 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150 (448)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~ 150 (448)
.+..++.+...|.++++++.+++++...+ |..|+++ |.+ +||.+++|+
T Consensus 121 ~g~~~p~p~~~f~~~~l~~~l~~~l~~~g-----------------------~~~pt~i---Q~~------aip~~l~G~ 168 (545)
T PTZ00110 121 AGENVPKPVVSFEYTSFPDYILKSLKNAG-----------------------FTEPTPI---QVQ------GWPIALSGR 168 (545)
T ss_pred cCCCCCcccCCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCC
Confidence 45566777789999999999999999999 9999999 999 999999999
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
|++++||||||||++|++|++..+... ..++++|||+||++||.|+.+.++.+.... ++++.+++|+.+...+.
T Consensus 169 dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~~-~i~~~~~~gg~~~~~q~ 247 (545)
T PTZ00110 169 DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGASS-KIRNTVAYGGVPKRGQI 247 (545)
T ss_pred CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhccc-CccEEEEeCCCCHHHHH
Confidence 999999999999999999999876532 246789999999999999999999999877 89999999999888887
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHH
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~ 305 (448)
..+..+ ++|+|+||++|.+++..+...++++++||+||||+|+++ +|...+..++..+++..|++++|||+|.++..+
T Consensus 248 ~~l~~~-~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~-gf~~~i~~il~~~~~~~q~l~~SAT~p~~v~~l 325 (545)
T PTZ00110 248 YALRRG-VEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDM-GFEPQIRKIVSQIRPDRQTLMWSATWPKEVQSL 325 (545)
T ss_pred HHHHcC-CCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhc-chHHHHHHHHHhCCCCCeEEEEEeCCCHHHHHH
Confidence 778775 899999999999999998888999999999999999998 999999999999999999999999999999999
Q ss_pred HHHhcC-CCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 306 CKKFMH-DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 306 ~~~~l~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
.+.++. +|..+.+.........++.+.+..+...+|...|..++... ...++||||++++.|+.++..|+..|+++.
T Consensus 326 ~~~l~~~~~v~i~vg~~~l~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~ 405 (545)
T PTZ00110 326 ARDLCKEEPVHVNVGSLDLTACHNIKQEVFVVEEHEKRGKLKMLLQRIMRDGDKILIFVETKKGADFLTKELRLDGWPAL 405 (545)
T ss_pred HHHHhccCCEEEEECCCccccCCCeeEEEEEEechhHHHHHHHHHHHhcccCCeEEEEecChHHHHHHHHHHHHcCCcEE
Confidence 998886 57777766553344567888888888888888888888765 467999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChh
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGLAITFASDEN 416 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~ 416 (448)
.+||+|++++|..++++|++|+ .|.+++|++..
T Consensus 406 ~ihg~~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~~G~ai~~~~~~- 484 (545)
T PTZ00110 406 CIHGDKKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGAKGASYTFLTPD- 484 (545)
T ss_pred EEECCCcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEECcc-
Confidence 9999999999999999999998 78999999887
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccc
Q psy1548 417 DAKILNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 417 d~~~l~~i~~~~~~~~~~~p~~~~~ 441 (448)
|...++.+.+.+....+++|+++..
T Consensus 485 ~~~~~~~l~~~l~~~~q~vp~~l~~ 509 (545)
T PTZ00110 485 KYRLARDLVKVLREAKQPVPPELEK 509 (545)
T ss_pred hHHHHHHHHHHHHHccCCCCHHHHH
Confidence 7888999999999999999988653
No 10
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.9e-48 Score=393.67 Aligned_cols=329 Identities=27% Similarity=0.398 Sum_probs=294.5
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
..|+++++++.+++++.+.| |..|+++ |++ +||.++.|+|++++||||
T Consensus 8 ~~f~~~~l~~~l~~~l~~~g-----------------------~~~pt~i---Q~~------aip~il~g~dvi~~ApTG 55 (423)
T PRK04837 8 QKFSDFALHPQVVEALEKKG-----------------------FHNCTPI---QAL------ALPLTLAGRDVAGQAQTG 55 (423)
T ss_pred CCHhhCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCcEEEECCCC
Confidence 57999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhcc-------CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCC
Q psy1548 160 MGKTAVFVLATLQQLETT-------DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
||||++|++|+++.+... ..++++|||+||++||.|+.+.+..+.... ++++..++|+.....+...+..+
T Consensus 56 sGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~- 133 (423)
T PRK04837 56 TGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEPLAQAT-GLKLGLAYGGDGYDKQLKVLESG- 133 (423)
T ss_pred chHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcCC-
Confidence 999999999999887532 235789999999999999999999999888 89999999998877777777654
Q ss_pred CcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC--CCeEEEEeccCCccHHHHHHHhc
Q psy1548 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH--TKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~--~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
++|+|+||+++.+++..+.+.+++++++|+||||+++++ +|..++..++..++. ..+.+++|||++..+..++..++
T Consensus 134 ~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~-~f~~~i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~~~~~ 212 (423)
T PRK04837 134 VDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDL-GFIKDIRWLFRRMPPANQRLNMLFSATLSYRVRELAFEHM 212 (423)
T ss_pred CCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhc-ccHHHHHHHHHhCCCccceeEEEEeccCCHHHHHHHHHHC
Confidence 899999999999999998899999999999999999998 999999999999874 56789999999999999999999
Q ss_pred CCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 311 HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 311 ~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
.+|..+.+... ......+.+.+.......|...|..++......++||||+++..|+.++..|...|+++..+||+|++
T Consensus 213 ~~p~~i~v~~~-~~~~~~i~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~ 291 (423)
T PRK04837 213 NNPEYVEVEPE-QKTGHRIKEELFYPSNEEKMRLLQTLIEEEWPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQ 291 (423)
T ss_pred CCCEEEEEcCC-CcCCCceeEEEEeCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCCh
Confidence 99988887665 34556788888888888899999999987777899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 391 EERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 391 ~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++|..++++|++|+ +.|+++|+...+++ +|.+.-.+-..++|.+...+.++.||
T Consensus 292 ~~R~~~l~~F~~g~--~~vLVaTdv~~rGi--Dip~v~~VI~~d~P~s~~~yiqR~GR 345 (423)
T PRK04837 292 KKRLRILEEFTRGD--LDILVATDVAARGL--HIPAVTHVFNYDLPDDCEDYVHRIGR 345 (423)
T ss_pred hHHHHHHHHHHcCC--CcEEEEechhhcCC--CccccCEEEEeCCCCchhheEecccc
Confidence 99999999999988 57888888655554 56666667778899999999999998
No 11
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.2e-48 Score=407.17 Aligned_cols=330 Identities=31% Similarity=0.468 Sum_probs=298.5
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
..|.++++++.+++++.+.| |..|+++ |++ +||.++.|+|+|++||||
T Consensus 6 ~~f~~l~L~~~ll~al~~~G-----------------------~~~ptpi---Q~~------ai~~ll~g~dvl~~ApTG 53 (629)
T PRK11634 6 TTFADLGLKAPILEALNDLG-----------------------YEKPSPI---QAE------CIPHLLNGRDVLGMAQTG 53 (629)
T ss_pred CCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHHcCCCEEEEcCCC
Confidence 46999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
+|||++|++|+++.+......+++||++||++|+.|+.+.+..+.+.++++.+..++|+.+...+...+..+ ++|+|+|
T Consensus 54 sGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~i~v~~~~gG~~~~~q~~~l~~~-~~IVVgT 132 (629)
T PRK11634 54 SGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRGVNVVALYGGQRYDVQLRALRQG-PQIVVGT 132 (629)
T ss_pred CcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEECCcCHHHHHHHhcCC-CCEEEEC
Confidence 999999999999988766667799999999999999999999998887789999999999888887777665 8999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++.+++.++.+.++++++||+||||.|+++ +|...+..++..+|...|+++||||+|+.+..+.+.++.+|..+.+.
T Consensus 133 Pgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~-gf~~di~~Il~~lp~~~q~llfSAT~p~~i~~i~~~~l~~~~~i~i~ 211 (629)
T PRK11634 133 PGRLLDHLKRGTLDLSKLSGLVLDEADEMLRM-GFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQ 211 (629)
T ss_pred HHHHHHHHHcCCcchhhceEEEeccHHHHhhc-ccHHHHHHHHHhCCCCCeEEEEEccCChhHHHHHHHHcCCCeEEEcc
Confidence 99999999998899999999999999999998 99999999999999999999999999999999999999999988776
Q ss_pred CcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q psy1548 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~ 399 (448)
.. ......+.+.++.+....|...|..++......++||||+|+..|+.++..|.+.|+.+..+||+|++.+|.++++.
T Consensus 212 ~~-~~~~~~i~q~~~~v~~~~k~~~L~~~L~~~~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~ 290 (629)
T PRK11634 212 SS-VTTRPDISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLER 290 (629)
T ss_pred Cc-cccCCceEEEEEEechhhHHHHHHHHHHhcCCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHH
Confidence 55 44567788888888888899999999988877899999999999999999999999999999999999999999999
Q ss_pred HhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 400 FKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 400 F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|++|+ +.|+++|+-..+++ ++.+.-.+-..++|.+.+.+.++.||
T Consensus 291 Fr~G~--~~ILVATdv~arGI--Dip~V~~VI~~d~P~~~e~yvqRiGR 335 (629)
T PRK11634 291 LKDGR--LDILIATDVAARGL--DVERISLVVNYDIPMDSESYVHRIGR 335 (629)
T ss_pred HhCCC--CCEEEEcchHhcCC--CcccCCEEEEeCCCCCHHHHHHHhcc
Confidence 99988 57888887544443 44444445567889999999999887
No 12
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=6.2e-48 Score=394.11 Aligned_cols=328 Identities=29% Similarity=0.466 Sum_probs=293.2
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
+|+++++++.+++++.+.+ |..|+++ |++ ++|.++.|+|+++++||||
T Consensus 2 ~f~~l~l~~~l~~~l~~~g-----------------------~~~pt~i---Q~~------ai~~il~g~dvlv~apTGs 49 (456)
T PRK10590 2 SFDSLGLSPDILRAVAEQG-----------------------YREPTPI---QQQ------AIPAVLEGRDLMASAQTGT 49 (456)
T ss_pred CHHHcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence 6899999999999999999 9999999 999 9999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccC------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCc
Q psy1548 161 GKTAVFVLATLQQLETTD------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 161 GKT~~~~l~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~ 234 (448)
|||++|++|+++.+.... ..+++|||+||++||.|+.+.++.+.... ++++..++|+.+...+...+..+ ++
T Consensus 50 GKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~~~~-~~~~~~~~gg~~~~~~~~~l~~~-~~ 127 (456)
T PRK10590 50 GKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYSKYL-NIRSLVVFGGVSINPQMMKLRGG-VD 127 (456)
T ss_pred cHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHhccC-CCEEEEEECCcCHHHHHHHHcCC-Cc
Confidence 999999999999875432 23589999999999999999999999887 89999999999888777666654 89
Q ss_pred EEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 235 IVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
|+|+||++|++++....+.++++++||+||||+|+++ +|...+..++..++...|++++|||+++++..++..++.+|.
T Consensus 128 IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~-~~~~~i~~il~~l~~~~q~l~~SAT~~~~~~~l~~~~~~~~~ 206 (456)
T PRK10590 128 VLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDM-GFIHDIRRVLAKLPAKRQNLLFSATFSDDIKALAEKLLHNPL 206 (456)
T ss_pred EEEEChHHHHHHHHcCCcccccceEEEeecHHHHhcc-ccHHHHHHHHHhCCccCeEEEEeCCCcHHHHHHHHHHcCCCe
Confidence 9999999999999988888999999999999999998 999999999999999999999999999999999999999998
Q ss_pred EEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 315 EVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
.+.+... ......+.+++..++...|...+..++......++||||+++..|+.+++.|.+.|+++..+||+|++++|.
T Consensus 207 ~i~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~ 285 (456)
T PRK10590 207 EIEVARR-NTASEQVTQHVHFVDKKRKRELLSQMIGKGNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGART 285 (456)
T ss_pred EEEEecc-cccccceeEEEEEcCHHHHHHHHHHHHHcCCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHH
Confidence 8877655 344567888888888888888888888877778999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 395 KKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 395 ~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++++.|++|+ +.|+++|+...+++ +|.+.-.+-..++|.+...+.++.||
T Consensus 286 ~~l~~F~~g~--~~iLVaTdv~~rGi--Dip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 286 RALADFKSGD--IRVLVATDIAARGL--DIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred HHHHHHHcCC--CcEEEEccHHhcCC--CcccCCEEEEeCCCCCHHHhhhhccc
Confidence 9999999987 57888887644443 45555556677889999899999998
No 13
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=9.8e-47 Score=392.57 Aligned_cols=322 Identities=25% Similarity=0.408 Sum_probs=289.7
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.+|.++++++.++++|.+.| |..|+++ |.+ +||.++.|+|+++++|||
T Consensus 9 ~~f~~l~l~~~l~~~L~~~g-----------------------~~~ptpi---Q~~------~ip~~l~G~Dvi~~ApTG 56 (572)
T PRK04537 9 LTFSSFDLHPALLAGLESAG-----------------------FTRCTPI---QAL------TLPVALPGGDVAGQAQTG 56 (572)
T ss_pred CChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEEcCCC
Confidence 46999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhcc-------CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCC
Q psy1548 160 MGKTAVFVLATLQQLETT-------DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~-------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
||||++|++|+++.+... ...+++|||+||++|+.|+++.+..+.... ++++..++|+.....+...+..+
T Consensus 57 SGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l~~~~-~i~v~~l~Gg~~~~~q~~~l~~~- 134 (572)
T PRK04537 57 TGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKFGADL-GLRFALVYGGVDYDKQRELLQQG- 134 (572)
T ss_pred CcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHHhCC-
Confidence 999999999999987532 124799999999999999999999999887 89999999999888777767654
Q ss_pred CcEEEEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC--CCeEEEEeccCCccHHHHHHHh
Q psy1548 233 PQIVVGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH--TKQVMMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~--~~q~i~~SAT~~~~~~~~~~~~ 309 (448)
++|+|+||++|++++... .+.+..+++|||||||+|+++ +|...+..+++.++. ..|+++||||++..+..+...+
T Consensus 135 ~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~-gf~~~i~~il~~lp~~~~~q~ll~SATl~~~v~~l~~~~ 213 (572)
T PRK04537 135 VDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDL-GFIKDIRFLLRRMPERGTRQTLLFSATLSHRVLELAYEH 213 (572)
T ss_pred CCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhc-chHHHHHHHHHhcccccCceEEEEeCCccHHHHHHHHHH
Confidence 899999999999998764 567899999999999999998 999999999999986 6899999999999999999999
Q ss_pred cCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 310 l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
+.+|..+.+... ......+.+.++.+...+|...+..++......++||||+|+..|+.+++.|.+.|+.+..+||+|+
T Consensus 214 l~~p~~i~v~~~-~~~~~~i~q~~~~~~~~~k~~~L~~ll~~~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~ 292 (572)
T PRK04537 214 MNEPEKLVVETE-TITAARVRQRIYFPADEEKQTLLLGLLSRSEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVP 292 (572)
T ss_pred hcCCcEEEeccc-cccccceeEEEEecCHHHHHHHHHHHHhcccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 999987776655 3456678888888888889999999998877889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChhhHHHHHH
Q psy1548 390 QEERLKKYQEFKDFH----------------------------------------------KGLAITFASDENDAKILNN 423 (448)
Q Consensus 390 ~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~ 423 (448)
+.+|.++++.|++|+ .|.+|+|++.. +...+..
T Consensus 293 ~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~G~~G~ai~~~~~~-~~~~l~~ 371 (572)
T PRK04537 293 QKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARLGEEGDAISFACER-YAMSLPD 371 (572)
T ss_pred HHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccCCCCceEEEEecHH-HHHHHHH
Confidence 999999999999998 78999999886 6788999
Q ss_pred HHHHhcCCCCCCCcc
Q psy1548 424 VQDRFDVSISELPDE 438 (448)
Q Consensus 424 i~~~~~~~~~~~p~~ 438 (448)
|++.++..+...|..
T Consensus 372 i~~~~~~~~~~~~~~ 386 (572)
T PRK04537 372 IEAYIEQKIPVEPVT 386 (572)
T ss_pred HHHHHcCCCCccccC
Confidence 999998887655443
No 14
>KOG0343|consensus
Probab=100.00 E-value=3.1e-48 Score=375.71 Aligned_cols=330 Identities=25% Similarity=0.398 Sum_probs=297.6
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|.+++++...+++|.+.+ |..|+.+ |+. +||.++.|+|||..|.|
T Consensus 68 ~~kF~dlpls~~t~kgLke~~-----------------------fv~~tei---Q~~------~Ip~aL~G~DvlGAAkT 115 (758)
T KOG0343|consen 68 IKKFADLPLSQKTLKGLKEAK-----------------------FVKMTEI---QRD------TIPMALQGHDVLGAAKT 115 (758)
T ss_pred hhhHHhCCCchHHHHhHhhcC-----------------------CccHHHH---HHh------hcchhccCccccccccc
Confidence 346999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhcc----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCc
Q psy1548 159 GMGKTAVFVLATLQQLETT----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~ 234 (448)
|||||++|++|+|+.+... ..|.-+|||+|||+||.|+++.+.+++++. ++..+++.||.....+...+.. .+
T Consensus 116 GSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk~h-~fSaGLiiGG~~~k~E~eRi~~--mN 192 (758)
T KOG0343|consen 116 GSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGKHH-DFSAGLIIGGKDVKFELERISQ--MN 192 (758)
T ss_pred CCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhhcc-ccccceeecCchhHHHHHhhhc--CC
Confidence 9999999999999987443 357789999999999999999999999998 9999999999987776666654 79
Q ss_pred EEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCC
Q psy1548 235 IVVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~ 313 (448)
|+||||++|++.+.. ..++-.++.++|+||||+|++. +|...+..|+..+|+.+|+++||||-+..+.++++-.+.+|
T Consensus 193 ILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM-GFk~tL~~Ii~~lP~~RQTLLFSATqt~svkdLaRLsL~dP 271 (758)
T KOG0343|consen 193 ILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM-GFKKTLNAIIENLPKKRQTLLFSATQTKSVKDLARLSLKDP 271 (758)
T ss_pred eEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH-hHHHHHHHHHHhCChhheeeeeecccchhHHHHHHhhcCCC
Confidence 999999999999876 5677899999999999999998 99999999999999999999999999999999999999999
Q ss_pred eEEEEcCc-ccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCCCH
Q psy1548 314 MEVYVDDE-AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ--NFPAVSIHRGMTQ 390 (448)
Q Consensus 314 ~~i~~~~~-~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~ 390 (448)
..+.+... ...++.++.|+|+.++-.+|+..|..+++.+...++|||+.|.+++..++..+++. |++...+||.|++
T Consensus 272 ~~vsvhe~a~~atP~~L~Q~y~~v~l~~Ki~~L~sFI~shlk~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q 351 (758)
T KOG0343|consen 272 VYVSVHENAVAATPSNLQQSYVIVPLEDKIDMLWSFIKSHLKKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQ 351 (758)
T ss_pred cEEEEeccccccChhhhhheEEEEehhhHHHHHHHHHHhccccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhH
Confidence 99988743 36788999999999999999999999999999999999999999999999999986 9999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 391 EERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 391 ~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
..|..++.+|-+.+ .+|+|||+-..+++ ++...-++--.+.|.+.+-|-++.||
T Consensus 352 ~~R~ev~~~F~~~~--~~vLF~TDv~aRGL--DFpaVdwViQ~DCPedv~tYIHRvGR 405 (758)
T KOG0343|consen 352 KKRIEVYKKFVRKR--AVVLFCTDVAARGL--DFPAVDWVIQVDCPEDVDTYIHRVGR 405 (758)
T ss_pred HHHHHHHHHHHHhc--ceEEEeehhhhccC--CCcccceEEEecCchhHHHHHHHhhh
Confidence 99999999998855 58999998654443 44444455556779998888888887
No 15
>KOG0340|consensus
Probab=100.00 E-value=1.2e-47 Score=354.45 Aligned_cols=324 Identities=28% Similarity=0.437 Sum_probs=296.5
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
..+|..+|+.+++.+.+...+ ...|+++ |+. |||.++.|+|+|.+|.|
T Consensus 6 ~~~F~~LGl~~Wlve~l~~l~-----------------------i~~pTpi---Q~~------cIpkILeGrdcig~AkT 53 (442)
T KOG0340|consen 6 AKPFSILGLSPWLVEQLKALG-----------------------IKKPTPI---QQA------CIPKILEGRDCIGCAKT 53 (442)
T ss_pred cCchhhcCccHHHHHHHHHhc-----------------------CCCCCch---Hhh------hhHHHhccccccccccc
Confidence 467999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||++|.+|+++++...+.+..++|++|||+|+.|+.++|..+++.+ ++++.+++||.+.-.+...+... ||++|+
T Consensus 54 GsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l-~lK~~vivGG~d~i~qa~~L~~r-PHvVva 131 (442)
T KOG0340|consen 54 GSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLL-NLKVSVIVGGTDMIMQAAILSDR-PHVVVA 131 (442)
T ss_pred CCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccc-cceEEEEEccHHHhhhhhhcccC-CCeEec
Confidence 9999999999999999999999999999999999999999999999998 99999999999988888888876 999999
Q ss_pred cHHHHHHHHHCC----CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCC--
Q psy1548 239 TPGRILALVRNK----KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD-- 312 (448)
Q Consensus 239 Tp~~l~~~l~~~----~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~-- 312 (448)
||+++..++..+ ...+++++++|+||||++++. .|-..+..++..+|..+|.++||||+++.+..+...-...
T Consensus 132 tPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~i~e~lP~~RQtLlfSATitd~i~ql~~~~i~k~~ 210 (442)
T KOG0340|consen 132 TPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEGIEECLPKPRQTLLFSATITDTIKQLFGCPITKSI 210 (442)
T ss_pred CccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhhhhccCCCccceEEEEeehhhHHHHhhcCCccccc
Confidence 999999998765 245789999999999999998 9999999999999999999999999998887776655544
Q ss_pred CeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCC---CCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 313 PMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE---FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 313 ~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~---~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
.......+. ..+...+.+.|+.++...|...|+.+++... .+.++||+|+..+|+.|+..|+..++.+..+|+.|+
T Consensus 211 a~~~e~~~~-vstvetL~q~yI~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~ 289 (442)
T KOG0340|consen 211 AFELEVIDG-VSTVETLYQGYILVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMP 289 (442)
T ss_pred ceEEeccCC-CCchhhhhhheeecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcch
Confidence 333343333 5678889999999999999999999997764 468999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChhhHHHHHH
Q psy1548 390 QEERLKKYQEFKDFH----------------------------------------------KGLAITFASDENDAKILNN 423 (448)
Q Consensus 390 ~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~ 423 (448)
+.+|...+..|+++. .|.+|+++|.. |.+++..
T Consensus 290 Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtARAGR~G~aiSivt~r-Dv~l~~a 368 (442)
T KOG0340|consen 290 QKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTARAGRKGMAISIVTQR-DVELLQA 368 (442)
T ss_pred HHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhcccCCcceEEEechh-hHHHHHH
Confidence 999999999999998 89999999965 9999999
Q ss_pred HHHHhcCCCCCCCccc
Q psy1548 424 VQDRFDVSISELPDEI 439 (448)
Q Consensus 424 i~~~~~~~~~~~p~~~ 439 (448)
||+..|.+..|.+...
T Consensus 369 iE~~igkKl~e~~~~~ 384 (442)
T KOG0340|consen 369 IEEEIGKKLTEYNKVQ 384 (442)
T ss_pred HHHHHhcccccccccc
Confidence 9999999999987663
No 16
>KOG0327|consensus
Probab=100.00 E-value=1.1e-47 Score=359.50 Aligned_cols=322 Identities=33% Similarity=0.586 Sum_probs=306.0
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.+|++++|+++|++++...| |+.|+.+ |+. ||+....|.|+++++++|
T Consensus 26 dsfddm~L~e~LLrgiy~yG-----------------------FekPSaI---Qqr------aI~p~i~G~dv~~qaqsg 73 (397)
T KOG0327|consen 26 DSFDDMNLKESLLRGIYAYG-----------------------FEKPSAI---QQR------AILPCIKGHDVIAQAQSG 73 (397)
T ss_pred hhhhhcCCCHHHHhHHHhhc-----------------------cCCchHH---Hhc------cccccccCCceeEeeecc
Confidence 48999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
+|||.+|.+++++.+.......++++++|+++|+.|+......++... ++++..+.|+.....+...+....++|+++|
T Consensus 74 TgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~-~~~v~~~igg~~~~~~~~~i~~~~~hivvGT 152 (397)
T KOG0327|consen 74 TGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHM-DVSVHACIGGTNVRREDQALLKDKPHIVVGT 152 (397)
T ss_pred ccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccc-ceeeeeecCcccchhhhhhhhccCceeecCC
Confidence 999999999999999887778899999999999999999999999888 9999999999988877766766668999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++.+++....+....++++|+||+|.|+.. +|..++..+++.+|++.|++++|||+|.++..+.++|+.+|..+.+.
T Consensus 153 pgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~-gfkdqI~~if~~lp~~vQv~l~SAT~p~~vl~vt~~f~~~pv~i~vk 231 (397)
T KOG0327|consen 153 PGRVFDMLNRGSLSTDGIKMFVLDEADEMLSR-GFKDQIYDIFQELPSDVQVVLLSATMPSDVLEVTKKFMREPVRILVK 231 (397)
T ss_pred chhHHHhhccccccccceeEEeecchHhhhcc-chHHHHHHHHHHcCcchhheeecccCcHHHHHHHHHhccCceEEEec
Confidence 99999999999888899999999999999998 99999999999999999999999999999999999999999999998
Q ss_pred CcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHH
Q psy1548 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQE 399 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~ 399 (448)
.. ..+...++|+|..+..++|...|+.+.+ .-.+.+|||||++.+..+..+|..+|+.+.++||+|.+.+|..++.+
T Consensus 232 k~-~ltl~gikq~~i~v~k~~k~~~l~dl~~--~~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~e 308 (397)
T KOG0327|consen 232 KD-ELTLEGIKQFYINVEKEEKLDTLCDLYR--RVTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMRE 308 (397)
T ss_pred ch-hhhhhheeeeeeeccccccccHHHHHHH--hhhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHH
Confidence 88 5789999999999999999999999999 45689999999999999999999999999999999999999999999
Q ss_pred HhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCC
Q psy1548 400 FKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSIS 433 (448)
Q Consensus 400 F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~ 433 (448)
|+.|. +|+.|++++.. |...++++++++++.+.
T Consensus 309 f~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~grkg~~in~v~~~-d~~~lk~ie~~y~~~i~ 387 (397)
T KOG0327|consen 309 FRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFGRKGVAINFVTEE-DVRDLKDIEKFYNTPIE 387 (397)
T ss_pred hhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccCCCceeeeeehHh-hHHHHHhHHHhcCCcce
Confidence 99998 89999999877 89999999999999999
Q ss_pred CCCccc
Q psy1548 434 ELPDEI 439 (448)
Q Consensus 434 ~~p~~~ 439 (448)
|+|.+.
T Consensus 388 e~p~~~ 393 (397)
T KOG0327|consen 388 ELPSNF 393 (397)
T ss_pred ecccch
Confidence 999875
No 17
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=2.2e-46 Score=387.47 Aligned_cols=337 Identities=27% Similarity=0.412 Sum_probs=299.4
Q ss_pred ccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC
Q psy1548 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g 149 (448)
+.|..++.+...|.++++++.+++++...| |..|+++ |.+ +||.++.|
T Consensus 111 ~~g~~~p~pi~~f~~~~l~~~l~~~L~~~g-----------------------~~~ptpi---Q~~------aip~il~g 158 (518)
T PLN00206 111 VKGEAVPPPILSFSSCGLPPKLLLNLETAG-----------------------YEFPTPI---QMQ------AIPAALSG 158 (518)
T ss_pred ecCCCCCchhcCHHhCCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhcC
Confidence 345667777788999999999999999999 9999999 999 99999999
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhc-------cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLET-------TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 222 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~-------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 222 (448)
+|+++++|||||||++|++|++..+.. ...++++|||+||++||.|+.+.++.+.+.. ++++..++||....
T Consensus 159 ~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~~~~-~~~~~~~~gG~~~~ 237 (518)
T PLN00206 159 RSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLGKGL-PFKTALVVGGDAMP 237 (518)
T ss_pred CCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchH
Confidence 999999999999999999999987642 2246799999999999999999999998887 78899999998888
Q ss_pred HhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccH
Q psy1548 223 KDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302 (448)
Q Consensus 223 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~ 302 (448)
.+...+..+ ++|+|+||++|.+++....+.++++++||+||||+|+++ +|+..+..++..++ ..|++++|||+++.+
T Consensus 238 ~q~~~l~~~-~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~-gf~~~i~~i~~~l~-~~q~l~~SATl~~~v 314 (518)
T PLN00206 238 QQLYRIQQG-VELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLER-GFRDQVMQIFQALS-QPQVLLFSATVSPEV 314 (518)
T ss_pred HHHHHhcCC-CCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhc-chHHHHHHHHHhCC-CCcEEEEEeeCCHHH
Confidence 887777665 899999999999999998889999999999999999998 99999999998885 579999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCC--CCeEEEEECccHHHHHHHHHHHh-CCC
Q psy1548 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE--FNQVVIFVKSVTRCIALSTLLSE-QNF 379 (448)
Q Consensus 303 ~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~--~~~~IIF~~s~~~a~~l~~~L~~-~g~ 379 (448)
..++..++.++..+..... ......+.+.+..+....|...+.+++.... .+++||||+++..|+.+++.|.. .|+
T Consensus 315 ~~l~~~~~~~~~~i~~~~~-~~~~~~v~q~~~~~~~~~k~~~l~~~l~~~~~~~~~~iVFv~s~~~a~~l~~~L~~~~g~ 393 (518)
T PLN00206 315 EKFASSLAKDIILISIGNP-NRPNKAVKQLAIWVETKQKKQKLFDILKSKQHFKPPAVVFVSSRLGADLLANAITVVTGL 393 (518)
T ss_pred HHHHHHhCCCCEEEEeCCC-CCCCcceeEEEEeccchhHHHHHHHHHHhhcccCCCEEEEcCCchhHHHHHHHHhhccCc
Confidence 9999999999988887665 3445667888888888888888888887543 35899999999999999999975 599
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEEec
Q psy1548 380 PAVSIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGLAITFAS 413 (448)
Q Consensus 380 ~~~~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t 413 (448)
.+..+||+|++++|..++++|++|+ .|.+++|++
T Consensus 394 ~~~~~Hg~~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g~~G~ai~f~~ 473 (518)
T PLN00206 394 KALSIHGEKSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMGEKGTAIVFVN 473 (518)
T ss_pred ceEEeeCCCCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCCCCeEEEEEEc
Confidence 9999999999999999999999999 789999998
Q ss_pred ChhhHHHHHHHHHHhcCCCCCCCcccccccc
Q psy1548 414 DENDAKILNNVQDRFDVSISELPDEIDLSTY 444 (448)
Q Consensus 414 ~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~ 444 (448)
.. +...+..+.+.+....+++|.++..+-+
T Consensus 474 ~~-~~~~~~~l~~~l~~~~~~vp~~l~~~~~ 503 (518)
T PLN00206 474 EE-DRNLFPELVALLKSSGAAIPRELANSRY 503 (518)
T ss_pred hh-HHHHHHHHHHHHHHcCCCCCHHHHhChh
Confidence 76 7888899999999999999998765443
No 18
>KOG0345|consensus
Probab=100.00 E-value=3e-47 Score=363.23 Aligned_cols=331 Identities=25% Similarity=0.398 Sum_probs=295.0
Q ss_pred CcccCC--CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 81 GFRDFL--LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
.|++++ |++++++++...| |...+|+ |.. +||.++.++||++.++|
T Consensus 5 ~~~~l~~~L~~~l~~~l~~~G-----------------------F~~mTpV---Qa~------tIPlll~~KDVvveavT 52 (567)
T KOG0345|consen 5 SFSSLAPPLSPWLLEALDESG-----------------------FEKMTPV---QAA------TIPLLLKNKDVVVEAVT 52 (567)
T ss_pred chhhcCCCccHHHHHHHHhcC-----------------------CcccCHH---HHh------hhHHHhcCCceEEEcCC
Confidence 566655 5599999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCC
Q psy1548 159 GMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 233 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~ 233 (448)
|||||++|++|++..+..+ +....+|||+|||||+.||.+.+..|...++++.+.++.||.....+...+.+.++
T Consensus 53 GSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~~l~~l~~~l~vGG~~v~~Di~~fkee~~ 132 (567)
T KOG0345|consen 53 GSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLEHLPNLNCELLVGGRSVEEDIKTFKEEGP 132 (567)
T ss_pred CCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHHhhhccceEEEecCccHHHHHHHHHHhCC
Confidence 9999999999999988332 22357999999999999999999999999889999999999999999999998889
Q ss_pred cEEEEcHHHHHHHHHCC--CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcC
Q psy1548 234 QIVVGTPGRILALVRNK--KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311 (448)
Q Consensus 234 ~IlV~Tp~~l~~~l~~~--~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~ 311 (448)
+|+|||||+|.+++.+. .+++.++.++|+||||++++. +|...+..|+..+|+.+++-+||||...++.++.+..+.
T Consensus 133 nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~ILs~LPKQRRTGLFSATq~~~v~dL~raGLR 211 (567)
T KOG0345|consen 133 NILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNTILSFLPKQRRTGLFSATQTQEVEDLARAGLR 211 (567)
T ss_pred cEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHHHHHhcccccccccccchhhHHHHHHHHhhcc
Confidence 99999999999999874 455679999999999999998 999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCccc-ccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCC
Q psy1548 312 DPMEVYVDDEAK-LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ--NFPAVSIHRGM 388 (448)
Q Consensus 312 ~~~~i~~~~~~~-~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~ 388 (448)
+|+.+.+..... .++..+..+|+.|+..+|...|.+++.....+++|||++|...++..+..|... +.++..+||.|
T Consensus 212 Npv~V~V~~k~~~~tPS~L~~~Y~v~~a~eK~~~lv~~L~~~~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~ 291 (567)
T KOG0345|consen 212 NPVRVSVKEKSKSATPSSLALEYLVCEADEKLSQLVHLLNNNKDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKM 291 (567)
T ss_pred CceeeeecccccccCchhhcceeeEecHHHHHHHHHHHHhccccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchh
Confidence 999999877632 378889999999999999999999999998999999999999999999998875 67899999999
Q ss_pred CHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 389 ~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++..|.++++.|++... ++.|||+-..+++ +|-+.-.+--.+.|.+.+.+.++.||
T Consensus 292 ~q~~R~k~~~~F~~~~~--~vl~~TDVaARGl--Dip~iD~VvQ~DpP~~~~~FvHR~GR 347 (567)
T KOG0345|consen 292 SQKARAKVLEAFRKLSN--GVLFCTDVAARGL--DIPGIDLVVQFDPPKDPSSFVHRCGR 347 (567)
T ss_pred cchhHHHHHHHHHhccC--ceEEeehhhhccC--CCCCceEEEecCCCCChhHHHhhcch
Confidence 99999999999999554 7888888644443 45555555556678888888888776
No 19
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=4.9e-46 Score=378.93 Aligned_cols=328 Identities=26% Similarity=0.425 Sum_probs=287.6
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
.|+++++++.+++.+.+.| |..|+++ |++ ++|.++.|+|+++++|||+
T Consensus 2 ~f~~l~l~~~l~~~l~~~g-----------------------~~~p~~i---Q~~------ai~~~~~g~d~l~~apTGs 49 (434)
T PRK11192 2 TFSELELDESLLEALQDKG-----------------------YTRPTAI---QAE------AIPPALDGRDVLGSAPTGT 49 (434)
T ss_pred CHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCCCC
Confidence 6899999999999999999 9999999 999 9999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcc----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 161 GKTAVFVLATLQQLETT----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 161 GKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
|||++|++|+++.+... .+.+++||++||++|+.|+.+.+..+.... ++++..++|+.....+...+..+ ++|+
T Consensus 50 GKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~l~~~-~~Il 127 (434)
T PRK11192 50 GKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAKHT-HLDIATITGGVAYMNHAEVFSEN-QDIV 127 (434)
T ss_pred hHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHccC-CcEEEEEECCCCHHHHHHHhcCC-CCEE
Confidence 99999999999987532 234689999999999999999999999888 89999999999887776666554 8999
Q ss_pred EEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc-cHHHHHHHhcCCCeE
Q psy1548 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK-EIRPVCKKFMHDPME 315 (448)
Q Consensus 237 V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~-~~~~~~~~~l~~~~~ 315 (448)
|+||++|++++..+.+.+.++++||+||||+|+++ +|...+..+...++...|+++||||++. .+..+...++.+|..
T Consensus 128 V~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~~~~~~~~~~~~~~ 206 (434)
T PRK11192 128 VATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAAETRWRKQTLLFSATLEGDAVQDFAERLLNDPVE 206 (434)
T ss_pred EEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHHhCccccEEEEEEeecCHHHHHHHHHHHccCCEE
Confidence 99999999999999899999999999999999998 9999999999999999999999999985 478888889999998
Q ss_pred EEEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 316 VYVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 316 i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
+..... .....++.+++..+.. ..|...|..+++.....++||||+++.+|+.++..|++.|+.+..+||+|++.+|.
T Consensus 207 i~~~~~-~~~~~~i~~~~~~~~~~~~k~~~l~~l~~~~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~ 285 (434)
T PRK11192 207 VEAEPS-RRERKKIHQWYYRADDLEHKTALLCHLLKQPEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRN 285 (434)
T ss_pred EEecCC-cccccCceEEEEEeCCHHHHHHHHHHHHhcCCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHH
Confidence 877665 3455677787777764 57888899988876778999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 395 KKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 395 ~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.+++.|++|+ +.|+++|+...+++ ++.+.-.+-..++|.+.+.+.++.||
T Consensus 286 ~~l~~f~~G~--~~vLVaTd~~~~Gi--Dip~v~~VI~~d~p~s~~~yiqr~GR 335 (434)
T PRK11192 286 EAIKRLTDGR--VNVLVATDVAARGI--DIDDVSHVINFDMPRSADTYLHRIGR 335 (434)
T ss_pred HHHHHHhCCC--CcEEEEccccccCc--cCCCCCEEEEECCCCCHHHHhhcccc
Confidence 9999999998 57788777544443 44444445556788888889999988
No 20
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.9e-45 Score=375.83 Aligned_cols=324 Identities=27% Similarity=0.494 Sum_probs=292.1
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|.++++++.+++++.+.| |..|+++ |.+ +|+.++.|+|+++++||
T Consensus 86 ~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~i---Q~~------ai~~~~~G~dvi~~apT 133 (475)
T PRK01297 86 KTRFHDFNLAPELMHAIHDLG-----------------------FPYCTPI---QAQ------VLGYTLAGHDAIGRAQT 133 (475)
T ss_pred CCCHhHCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCC
Confidence 347889999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccC-------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcC
Q psy1548 159 GMGKTAVFVLATLQQLETTD-------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 231 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~-------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~ 231 (448)
|||||++|++|+++.+.... +.+++|||+||++|+.|+.+.++.+.+.. ++++..++|+.+...+...+...
T Consensus 134 GSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~~~-~~~v~~~~gg~~~~~~~~~~~~~ 212 (475)
T PRK01297 134 GTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTKYT-GLNVMTFVGGMDFDKQLKQLEAR 212 (475)
T ss_pred CChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhccC-CCEEEEEEccCChHHHHHHHhCC
Confidence 99999999999999886543 24689999999999999999999999887 89999999998888777777666
Q ss_pred CCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC--CCeEEEEeccCCccHHHHHHHh
Q psy1548 232 NPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH--TKQVMMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 232 ~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~--~~q~i~~SAT~~~~~~~~~~~~ 309 (448)
.++|+|+||++|+.++..+...++++++|||||||++++. +|...+..+++.++. ..|++++|||++.++..++..+
T Consensus 213 ~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~-~~~~~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~~~~ 291 (475)
T PRK01297 213 FCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDM-GFIPQVRQIIRQTPRKEERQTLLFSATFTDDVMNLAKQW 291 (475)
T ss_pred CCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhc-ccHHHHHHHHHhCCCCCCceEEEEEeecCHHHHHHHHHh
Confidence 6899999999999999888888999999999999999998 999999999998864 5799999999999999999999
Q ss_pred cCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 310 l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
+.+|..+.+... .....++.+.+..+...+|...+..++......++||||+++++|+.+++.|.+.|+.+..+||+|+
T Consensus 292 ~~~~~~v~~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~ 370 (475)
T PRK01297 292 TTDPAIVEIEPE-NVASDTVEQHVYAVAGSDKYKLLYNLVTQNPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVP 370 (475)
T ss_pred ccCCEEEEeccC-cCCCCcccEEEEEecchhHHHHHHHHHHhcCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCC
Confidence 999988877665 4445667777777888889999999998877789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChhhHHHHHH
Q psy1548 390 QEERLKKYQEFKDFH----------------------------------------------KGLAITFASDENDAKILNN 423 (448)
Q Consensus 390 ~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~ 423 (448)
+++|.++++.|++|+ .|.+|+|++.+ |..++..
T Consensus 371 ~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~g~~g~~i~~~~~~-d~~~~~~ 449 (475)
T PRK01297 371 QHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRAGASGVSISFAGED-DAFQLPE 449 (475)
T ss_pred HHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCCCCCceEEEEecHH-HHHHHHH
Confidence 999999999999998 78899999876 8889999
Q ss_pred HHHHhcCCC-CCCCcc
Q psy1548 424 VQDRFDVSI-SELPDE 438 (448)
Q Consensus 424 i~~~~~~~~-~~~p~~ 438 (448)
+++.++.++ +++|..
T Consensus 450 ~~~~~~~~~~~~~~~~ 465 (475)
T PRK01297 450 IEELLGRKISCEMPPA 465 (475)
T ss_pred HHHHhCCCCcccCCcH
Confidence 999999997 576653
No 21
>KOG0333|consensus
Probab=100.00 E-value=9.3e-46 Score=356.86 Aligned_cols=335 Identities=26% Similarity=0.403 Sum_probs=300.2
Q ss_pred cCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCc
Q psy1548 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150 (448)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~ 150 (448)
+|..++-+..+|++.+++.++++.+...+ |..|+++ |.+ ++|..+..+
T Consensus 236 kg~~lpnplrnwEE~~~P~e~l~~I~~~~-----------------------y~eptpI---qR~------aipl~lQ~r 283 (673)
T KOG0333|consen 236 KGGRLPNPLRNWEESGFPLELLSVIKKPG-----------------------YKEPTPI---QRQ------AIPLGLQNR 283 (673)
T ss_pred cCCCCCccccChhhcCCCHHHHHHHHhcC-----------------------CCCCchH---HHh------hccchhccC
Confidence 34555566778999999999999999999 9999999 999 999999999
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhc---------cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCccc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLET---------TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~---------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 221 (448)
|+|..+.||||||++|++|++..+.. ...++.+++++|||+|++|+.+.-.+|++.+ ++++..+.||...
T Consensus 284 D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf~~~l-g~r~vsvigg~s~ 362 (673)
T KOG0333|consen 284 DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKFGKPL-GIRTVSVIGGLSF 362 (673)
T ss_pred CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHhcccc-cceEEEEecccch
Confidence 99999999999999999999987632 3457899999999999999999999999998 8999999999999
Q ss_pred HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCC-------------
Q psy1548 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT------------- 288 (448)
Q Consensus 222 ~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~------------- 288 (448)
.++...+..+ |+|+|+||++|.+.+.+..+-++++.++|+||||+|++. +|.+++..++..+|..
T Consensus 363 EEq~fqls~g-ceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDm-gfE~dv~~iL~~mPssn~k~~tde~~~~~ 440 (673)
T KOG0333|consen 363 EEQGFQLSMG-CEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDM-GFEPDVQKILEQMPSSNAKPDTDEKEGEE 440 (673)
T ss_pred hhhhhhhhcc-ceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcc-cccHHHHHHHHhCCccccCCCccchhhHH
Confidence 9888888887 999999999999999999999999999999999999998 9999999999988731
Q ss_pred ------------CeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCe
Q psy1548 289 ------------KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQ 356 (448)
Q Consensus 289 ------------~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~ 356 (448)
+|.++||||+|+.+..+++.|+.+|+.+.+... ......++|.++.+..++|...|.+++.+.-..+
T Consensus 441 ~~~~~~~~~k~yrqT~mftatm~p~verlar~ylr~pv~vtig~~-gk~~~rveQ~v~m~~ed~k~kkL~eil~~~~~pp 519 (673)
T KOG0333|consen 441 RVRKNFSSSKKYRQTVMFTATMPPAVERLARSYLRRPVVVTIGSA-GKPTPRVEQKVEMVSEDEKRKKLIEILESNFDPP 519 (673)
T ss_pred HHHhhcccccceeEEEEEecCCChHHHHHHHHHhhCCeEEEeccC-CCCccchheEEEEecchHHHHHHHHHHHhCCCCC
Confidence 589999999999999999999999999999887 4456789999999999999999999999987779
Q ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--------------------------------
Q psy1548 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------- 404 (448)
Q Consensus 357 ~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~-------------------------------- 404 (448)
+|||+|+++.|+.||+.|.+.|+++..+||+-++++|..+++.|++|.
T Consensus 520 iIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksie 599 (673)
T KOG0333|consen 520 IIIFVNTKKGADALAKILEKAGYKVTTLHGGKSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIE 599 (673)
T ss_pred EEEEEechhhHHHHHHHHhhccceEEEeeCCccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHH
Confidence 999999999999999999999999999999999999999999999977
Q ss_pred --------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccc
Q psy1548 405 --------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 405 --------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~ 441 (448)
.|.+|+|+|..++.-+..-.+....-.....|.++.+
T Consensus 600 DYtHRIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l~es~~s~~P~Ela~ 650 (673)
T KOG0333|consen 600 DYTHRIGRTGRAGKSGTAISFLTPADTAVFYDLKQALRESVKSHCPPELAN 650 (673)
T ss_pred HHHHHhccccccccCceeEEEeccchhHHHHHHHHHHHHhhhccCChhhcc
Confidence 8999999999854444444555555555566666543
No 22
>KOG0346|consensus
Probab=100.00 E-value=1.2e-45 Score=349.51 Aligned_cols=291 Identities=25% Similarity=0.380 Sum_probs=266.1
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.+|+++++++.+++++.+.| |..|+.+ |+. +||.++.|+|++..|.||
T Consensus 19 ktFe~~gLD~RllkAi~~lG-----------------------~ekpTlI---Qs~------aIplaLEgKDvvarArTG 66 (569)
T KOG0346|consen 19 KTFEEFGLDSRLLKAITKLG-----------------------WEKPTLI---QSS------AIPLALEGKDVVARARTG 66 (569)
T ss_pred ccHHHhCCCHHHHHHHHHhC-----------------------cCCcchh---hhc------ccchhhcCcceeeeeccC
Confidence 58999999999999999999 9999999 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhcc------CCCeEEEEeeccHHHHHHHHHHHHHhhccCC-CceEEEEEcCcccHHhHHHHhcCC
Q psy1548 160 MGKTAVFVLATLQQLETT------DSNVYVLVMCHTRELAFQISKEYERFSKYMS-NIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~-~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
||||++|++|+++.+... ..++.++|++||+|||+|++..+.++..+.+ .+++.-+..+.+.......+...
T Consensus 67 SGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c~k~lr~~nl~s~~sdsv~~~~L~d~- 145 (569)
T KOG0346|consen 67 SGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYCSKDLRAINLASSMSDSVNSVALMDL- 145 (569)
T ss_pred CCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccchHHHHHHHccC-
Confidence 999999999999988543 3568999999999999999999999887764 57777777666655555556554
Q ss_pred CcEEEEcHHHHHHHHHCCC-CcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcC
Q psy1548 233 PQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~~-~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~ 311 (448)
|+|+|+||++++.++..+. ..+..++++|+||||.++.. ||..++..+.+.+|+..|.++||||+++++..+.+-++.
T Consensus 146 pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk~l~~~LPr~~Q~~LmSATl~dDv~~LKkL~l~ 224 (569)
T KOG0346|consen 146 PDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLKKLRSHLPRIYQCFLMSATLSDDVQALKKLFLH 224 (569)
T ss_pred CCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHHHHHHhCCchhhheeehhhhhhHHHHHHHHhcc
Confidence 9999999999999998876 67889999999999999998 999999999999999999999999999999999999999
Q ss_pred CCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 312 DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 312 ~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
+|+.+.....+...+..+.|+++.|++.+|+..++.+++.. -.+++|||+||..+|.+|.-.|.+.|++.+.++|.|+.
T Consensus 225 nPviLkl~e~el~~~dqL~Qy~v~cse~DKflllyallKL~LI~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~ 304 (569)
T KOG0346|consen 225 NPVILKLTEGELPNPDQLTQYQVKCSEEDKFLLLYALLKLRLIRGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPA 304 (569)
T ss_pred CCeEEEeccccCCCcccceEEEEEeccchhHHHHHHHHHHHHhcCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccc
Confidence 99999988876667788999999999999999999998753 46799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCC
Q psy1548 391 EERLKKYQEFKDFH 404 (448)
Q Consensus 391 ~eR~~~l~~F~~g~ 404 (448)
.-|.-++++|..|-
T Consensus 305 NSR~Hii~QFNkG~ 318 (569)
T KOG0346|consen 305 NSRCHIIEQFNKGL 318 (569)
T ss_pred cchhhHHHHhhCcc
Confidence 99999999999987
No 23
>KOG0339|consensus
Probab=100.00 E-value=8.6e-45 Score=348.56 Aligned_cols=333 Identities=26% Similarity=0.392 Sum_probs=302.0
Q ss_pred ccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC
Q psy1548 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g 149 (448)
+.|...+.+...|.+++++..|..++...- |..|+++ |.+ ++|.+++|
T Consensus 213 v~g~s~~rpvtsfeh~gfDkqLm~airk~E-----------------------y~kptpi---q~q------alptalsg 260 (731)
T KOG0339|consen 213 VSGSSPPRPVTSFEHFGFDKQLMTAIRKSE-----------------------YEKPTPI---QCQ------ALPTALSG 260 (731)
T ss_pred eccCCCCCCcchhhhcCchHHHHHHHhhhh-----------------------cccCCcc---ccc------cccccccc
Confidence 345555666778999999999999999998 9999999 999 99999999
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
++|+-.|.||||||.+|++|++.++... ..++..+|+|||++||.|++.++++|++.+ ++++.+++||.+..+|
T Consensus 261 rdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y-gl~~v~~ygGgsk~eQ 339 (731)
T KOG0339|consen 261 RDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY-GLRVVAVYGGGSKWEQ 339 (731)
T ss_pred ccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc-cceEEEeecCCcHHHH
Confidence 9999999999999999999999887432 457899999999999999999999999998 9999999999999999
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHH
Q psy1548 225 EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~ 304 (448)
...|+.+ +.|+|+||++|.++++.+..++.++.+|||||+++|++. +|..+++.|.....+.+|+++||||++..+..
T Consensus 340 ~k~Lk~g-~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdm-Gfe~qVrSI~~hirpdrQtllFsaTf~~kIe~ 417 (731)
T KOG0339|consen 340 SKELKEG-AEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDM-GFEPQVRSIKQHIRPDRQTLLFSATFKKKIEK 417 (731)
T ss_pred HHhhhcC-CeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhcc-ccHHHHHHHHhhcCCcceEEEeeccchHHHHH
Confidence 9999965 999999999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred HHHHhcCCCeEEEEcCcccccccceeEEEEEcCcc-hHHHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN-EKNKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 305 ~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
+++.++.+|+.+..... ......|.|.+..+.+. .|+.+|..-|.. ...+++|||+.-...++.++..|+-.|+++.
T Consensus 418 lard~L~dpVrvVqg~v-gean~dITQ~V~V~~s~~~Kl~wl~~~L~~f~S~gkvlifVTKk~~~e~i~a~Lklk~~~v~ 496 (731)
T KOG0339|consen 418 LARDILSDPVRVVQGEV-GEANEDITQTVSVCPSEEKKLNWLLRHLVEFSSEGKVLIFVTKKADAEEIAANLKLKGFNVS 496 (731)
T ss_pred HHHHHhcCCeeEEEeeh-hccccchhheeeeccCcHHHHHHHHHHhhhhccCCcEEEEEeccCCHHHHHHHhccccceee
Confidence 99999999999887765 44567788887777664 577777665544 3568999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChh
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGLAITFASDEN 416 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~ 416 (448)
.+||+|.+.+|.+++.+|+.+. .|++-+++|..
T Consensus 497 llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~kGvayTlvTeK- 575 (731)
T KOG0339|consen 497 LLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGEKGVAYTLVTEK- 575 (731)
T ss_pred eecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccccceeeEEechh-
Confidence 9999999999999999999996 89999999877
Q ss_pred hHHHHHHHHHHhcCCCCCCCccc
Q psy1548 417 DAKILNNVQDRFDVSISELPDEI 439 (448)
Q Consensus 417 d~~~l~~i~~~~~~~~~~~p~~~ 439 (448)
|......+-+.+.-..+.+|+.+
T Consensus 576 Da~fAG~LVnnLe~agQnVP~~l 598 (731)
T KOG0339|consen 576 DAEFAGHLVNNLEGAGQNVPDEL 598 (731)
T ss_pred hHHHhhHHHHHHhhccccCChHH
Confidence 77787888888888899999874
No 24
>KOG0332|consensus
Probab=100.00 E-value=6.7e-46 Score=344.78 Aligned_cols=328 Identities=27% Similarity=0.466 Sum_probs=298.5
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceeee
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILCQ 155 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli~ 155 (448)
....|+++.|+|++++++..++ |..|+.| |.. ++|.++.. +|+|.+
T Consensus 88 S~ksFeeL~LkPellkgly~M~-----------------------F~kPskI---Qe~------aLPlll~~Pp~nlIaQ 135 (477)
T KOG0332|consen 88 SAKSFEELRLKPELLKGLYAMK-----------------------FQKPSKI---QET------ALPLLLAEPPQNLIAQ 135 (477)
T ss_pred ccccHHhhCCCHHHHhHHHHhc-----------------------cCCcchH---HHh------hcchhhcCCchhhhhh
Confidence 4467999999999999999999 9999999 999 99999985 899999
Q ss_pred ccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcE
Q psy1548 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235 (448)
Q Consensus 156 apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~I 235 (448)
+..|+|||.||.+.+|.++......|+++.|+||++||.|+.+.+.+.+++. +++..+...+..... -..+ ..+|
T Consensus 136 sqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~-~ita~yair~sk~~r-G~~i---~eqI 210 (477)
T KOG0332|consen 136 SQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFT-ELTASYAIRGSKAKR-GNKL---TEQI 210 (477)
T ss_pred hcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCce-eeeEEEEecCccccc-CCcc---hhhe
Confidence 9999999999999999999988888999999999999999999999999998 888888876652111 1111 2589
Q ss_pred EEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 236 VVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 236 lV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
+|+||+.+.+++.. +.+.+..++.+|+||||.|++..||.++-..|++.+|+++|+++||||+...+..++...++++.
T Consensus 211 viGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~~~QllLFSATf~e~V~~Fa~kivpn~n 290 (477)
T KOG0332|consen 211 VIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPRNQQLLLFSATFVEKVAAFALKIVPNAN 290 (477)
T ss_pred eeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCCcceEEeeechhHHHHHHHHHHhcCCCc
Confidence 99999999999887 88899999999999999999877899999999999999999999999999999999999999999
Q ss_pred EEEEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHH
Q psy1548 315 EVYVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEER 393 (448)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR 393 (448)
.+.+..+ .....+|+|+|+.|.. ++|++.|.++.....-++.||||.|++.|..|+..|++.|..|.++||+|+-++|
T Consensus 291 ~i~Lk~e-el~L~~IkQlyv~C~~~~~K~~~l~~lyg~~tigqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R 369 (477)
T KOG0332|consen 291 VIILKRE-ELALDNIKQLYVLCACRDDKYQALVNLYGLLTIGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQR 369 (477)
T ss_pred eeeeehh-hccccchhhheeeccchhhHHHHHHHHHhhhhhhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHH
Confidence 9999888 7788999999999986 5799999999888888999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC----------------------------------------------------CceEEEEecChhhHHHH
Q psy1548 394 LKKYQEFKDFH----------------------------------------------------KGLAITFASDENDAKIL 421 (448)
Q Consensus 394 ~~~l~~F~~g~----------------------------------------------------~g~~I~~~t~~~d~~~l 421 (448)
..++++|++|+ +|++|+|+.+..+.+++
T Consensus 370 ~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGkkG~a~n~v~~~~s~~~m 449 (477)
T KOG0332|consen 370 AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGKKGLAINLVDDKDSMNIM 449 (477)
T ss_pred HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccccceEEEeecccCcHHHH
Confidence 99999999998 89999999999999999
Q ss_pred HHHHHHhcCCCCCC-Cccccccc
Q psy1548 422 NNVQDRFDVSISEL-PDEIDLST 443 (448)
Q Consensus 422 ~~i~~~~~~~~~~~-p~~~~~~~ 443 (448)
+.||+.|+..+..+ |++++.++
T Consensus 450 n~iq~~F~~~i~~~~~~d~~E~e 472 (477)
T KOG0332|consen 450 NKIQKHFNMKIKRLDPDDLDELE 472 (477)
T ss_pred HHHHHHHhhcceecCCccHHHHH
Confidence 99999998877766 55555443
No 25
>KOG0336|consensus
Probab=100.00 E-value=9.9e-46 Score=346.88 Aligned_cols=334 Identities=25% Similarity=0.381 Sum_probs=304.4
Q ss_pred eeeccCCcc-cCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCccee
Q psy1548 75 VSIHSSGFR-DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153 (448)
Q Consensus 75 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vl 153 (448)
.+.+.-.|+ .|+-.+++++.+.+.| |..|+|+ |.+ +||.++.|.|++
T Consensus 214 IPnP~ctFddAFq~~pevmenIkK~G-----------------------FqKPtPI---qSQ------aWPI~LQG~Dli 261 (629)
T KOG0336|consen 214 IPNPVCTFDDAFQCYPEVMENIKKTG-----------------------FQKPTPI---QSQ------AWPILLQGIDLI 261 (629)
T ss_pred CCCCcCcHHHHHhhhHHHHHHHHhcc-----------------------CCCCCcc---hhc------ccceeecCcceE
Confidence 344445565 4678899999999999 9999999 999 999999999999
Q ss_pred eeccCCChhHHHHHHHHHHhhhc------cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHH
Q psy1548 154 CQAKSGMGKTAVFVLATLQQLET------TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 227 (448)
Q Consensus 154 i~apTGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 227 (448)
..|.||+|||++|++|.+.++.. ...++.+|+++||++|+.|+.-++.+++-. +.+..+++|+.....+...
T Consensus 262 GVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kysyn--g~ksvc~ygggnR~eqie~ 339 (629)
T KOG0336|consen 262 GVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYSYN--GLKSVCVYGGGNRNEQIED 339 (629)
T ss_pred EEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhhhc--CcceEEEecCCCchhHHHH
Confidence 99999999999999998876643 235789999999999999999888887654 8899999999999999999
Q ss_pred HhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 228 LKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 228 l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
++.+ .+|+|+||++|.++...+.+++.++.++|+||||+|++. +|.+++.+++-...+++|+++.|||||+.++.++.
T Consensus 340 lkrg-veiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDM-gFEpqIrkilldiRPDRqtvmTSATWP~~VrrLa~ 417 (629)
T KOG0336|consen 340 LKRG-VEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDM-GFEPQIRKILLDIRPDRQTVMTSATWPEGVRRLAQ 417 (629)
T ss_pred HhcC-ceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcc-cccHHHHHHhhhcCCcceeeeecccCchHHHHHHH
Confidence 9987 999999999999999999999999999999999999998 99999999999999999999999999999999999
Q ss_pred HhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC
Q psy1548 308 KFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386 (448)
Q Consensus 308 ~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~ 386 (448)
.|+++|..+.+...+-...+.++|.++...+.+|...+..++... ...++||||..+..|+.|...|.-.|+.+-.+||
T Consensus 418 sY~Kep~~v~vGsLdL~a~~sVkQ~i~v~~d~~k~~~~~~f~~~ms~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG 497 (629)
T KOG0336|consen 418 SYLKEPMIVYVGSLDLVAVKSVKQNIIVTTDSEKLEIVQFFVANMSSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHG 497 (629)
T ss_pred HhhhCceEEEecccceeeeeeeeeeEEecccHHHHHHHHHHHHhcCCCceEEEEEechhhhhhccchhhhcccchhhccC
Confidence 999999999998886677788999998888889999999998876 4569999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 387 GMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+-.+.+|+.+++.|++|+ +-|+++|+-..+++ ++.+..++-.+++|-+++.+.++.||
T Consensus 498 ~r~Q~DrE~al~~~ksG~--vrILvaTDlaSRGl--Dv~DiTHV~NyDFP~nIeeYVHRvGr 555 (629)
T KOG0336|consen 498 NREQSDREMALEDFKSGE--VRILVATDLASRGL--DVPDITHVYNYDFPRNIEEYVHRVGR 555 (629)
T ss_pred ChhhhhHHHHHHhhhcCc--eEEEEEechhhcCC--CchhcceeeccCCCccHHHHHHHhcc
Confidence 999999999999999998 78888888766665 88899999999999999999988887
No 26
>KOG0342|consensus
Probab=100.00 E-value=6.7e-46 Score=356.27 Aligned_cols=332 Identities=27% Similarity=0.420 Sum_probs=296.2
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|.+..+++..++++.++| |...+++ |+. .+|.++.|+|+++.|.|
T Consensus 81 ~~~f~~~~LS~~t~kAi~~~G-----------------------F~~MT~V---Q~~------ti~pll~gkDvl~~AKT 128 (543)
T KOG0342|consen 81 TFRFEEGSLSPLTLKAIKEMG-----------------------FETMTPV---QQK------TIPPLLEGKDVLAAAKT 128 (543)
T ss_pred hhHhhccccCHHHHHHHHhcC-----------------------ccchhHH---HHh------hcCccCCCccceeeecc
Confidence 456889999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhcc----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCc
Q psy1548 159 GMGKTAVFVLATLQQLETT----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~ 234 (448)
|+|||++|++|+++.+... ..+..++|+||||+||.|++.+++.+..+.+...+..+.||.........+.. +++
T Consensus 129 GtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~~h~~~~v~~viGG~~~~~e~~kl~k-~~n 207 (543)
T KOG0342|consen 129 GTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLKYHESITVGIVIGGNNFSVEADKLVK-GCN 207 (543)
T ss_pred CCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHhhCCCcceEEEeCCccchHHHHHhhc-ccc
Confidence 9999999999999987543 35678999999999999999999999998878999999999999888888888 599
Q ss_pred EEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcC-C
Q psy1548 235 IVVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH-D 312 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~-~ 312 (448)
|+|+|||+|++++.+ +.+.+.+++++|+||||++++. +|+.++..|++.+|..+|.++||||.+++++++++-.+. +
T Consensus 208 iliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di~~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~~L~~d 286 (543)
T KOG0342|consen 208 ILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDVEQIIKILPKQRQTLLFSATQPSKVKDLARGALKRD 286 (543)
T ss_pred EEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHHHHHHHhccccceeeEeeCCCcHHHHHHHHHhhcCC
Confidence 999999999999987 4556688899999999999998 999999999999999999999999999999999987665 5
Q ss_pred CeEEEEcCcc-cccccceeEEEEEcCcchHHHHHHHHHhhCCC-CeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 313 PMEVYVDDEA-KLTLHGLQQHYVKLKENEKNKKLFELLDVLEF-NQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 313 ~~~i~~~~~~-~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~-~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
|..+.+.+.. ..+...+.|-|+.++...++-.+..+++.+.. .++||||+|...+..++..|+...++|..+||++++
T Consensus 287 ~~~v~~~d~~~~~The~l~Qgyvv~~~~~~f~ll~~~LKk~~~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q 366 (543)
T KOG0342|consen 287 PVFVNVDDGGERETHERLEQGYVVAPSDSRFSLLYTFLKKNIKRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQ 366 (543)
T ss_pred ceEeecCCCCCcchhhcccceEEeccccchHHHHHHHHHHhcCCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcc
Confidence 8888776553 35677899999999999899999999998866 799999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 391 EERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 391 ~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
..|..+..+|++.++ +|++||+-.-+++ ++-+.-++-=.+.|++...|-++.||
T Consensus 367 ~kRT~~~~~F~kaes--gIL~cTDVaARGl--D~P~V~~VvQ~~~P~d~~~YIHRvGR 420 (543)
T KOG0342|consen 367 NKRTSTFFEFCKAES--GILVCTDVAARGL--DIPDVDWVVQYDPPSDPEQYIHRVGR 420 (543)
T ss_pred cccchHHHHHhhccc--ceEEecchhhccC--CCCCceEEEEeCCCCCHHHHHHHhcc
Confidence 999999999999885 7888888755554 55555555556778888888888887
No 27
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=7.6e-44 Score=359.71 Aligned_cols=324 Identities=32% Similarity=0.546 Sum_probs=290.4
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|+++++++.+++++...+ |..|+++ |.+ +|+.++.|+|+++++||
T Consensus 27 ~~~~~~l~l~~~~~~~l~~~~-----------------------~~~~~~~---Q~~------ai~~i~~~~d~ii~apT 74 (401)
T PTZ00424 27 VDSFDALKLNEDLLRGIYSYG-----------------------FEKPSAI---QQR------GIKPILDGYDTIGQAQS 74 (401)
T ss_pred cCCHhhCCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCC
Confidence 467999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||++|++|+++.+.....+.++||++|+++|+.|+.+.+..+.... ++.+..+.|+.....+...+..+ ++|+|+
T Consensus 75 GsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~Ivv~ 152 (401)
T PTZ00424 75 GTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYL-KVRCHACVGGTVVRDDINKLKAG-VHMVVG 152 (401)
T ss_pred CChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhc-CceEEEEECCcCHHHHHHHHcCC-CCEEEE
Confidence 9999999999999988765566799999999999999999999998776 78888889998777666666665 899999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||+++.+++.++...+++++++|+||||++.++ ++...+..+++.+++..|++++|||+++.+..+...++.+|..+.+
T Consensus 153 Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 231 (401)
T PTZ00424 153 TPGRVYDMIDKRHLRVDDLKLFILDEADEMLSR-GFKGQIYDVFKKLPPDVQVALFSATMPNEILELTTKFMRDPKRILV 231 (401)
T ss_pred CcHHHHHHHHhCCcccccccEEEEecHHHHHhc-chHHHHHHHHhhCCCCcEEEEEEecCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999888888999999999999999998 8999999999999999999999999999999999999999988776
Q ss_pred cCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 319 DDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 319 ~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
... .....++.+++..+.. ..+...+..++......++||||+++++|+.+++.|...++.+..+||+|++++|..++
T Consensus 232 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~ 310 (401)
T PTZ00424 232 KKD-ELTLEGIRQFYVAVEKEEWKFDTLCDLYETLTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIM 310 (401)
T ss_pred CCC-CcccCCceEEEEecChHHHHHHHHHHHHHhcCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHH
Confidence 554 3456677777777765 34677788888777778999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
+.|++|+ .|.+++|+++. |...++.+++.++..
T Consensus 311 ~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~~G~~i~l~~~~-~~~~~~~~e~~~~~~ 389 (401)
T PTZ00424 311 REFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGRKGVAINFVTPD-DIEQLKEIERHYNTQ 389 (401)
T ss_pred HHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCCCceEEEEEcHH-HHHHHHHHHHHHCCc
Confidence 9999998 78899999876 889999999999999
Q ss_pred CCCCCccc
Q psy1548 432 ISELPDEI 439 (448)
Q Consensus 432 ~~~~p~~~ 439 (448)
+.++|...
T Consensus 390 ~~~~~~~~ 397 (401)
T PTZ00424 390 IEEMPMEV 397 (401)
T ss_pred ccccCcch
Confidence 99987664
No 28
>KOG0335|consensus
Probab=100.00 E-value=1.1e-45 Score=360.50 Aligned_cols=342 Identities=27% Similarity=0.394 Sum_probs=306.6
Q ss_pred hhccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeee
Q psy1548 68 KEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147 (448)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~ 147 (448)
.++.|.+.+.+..+|.+-.+...+...+...+ |..|+++ |+. +||.+.
T Consensus 62 v~~~G~~~p~~i~~f~~~~l~~~l~~ni~~~~-----------------------~~~ptpv---Qk~------sip~i~ 109 (482)
T KOG0335|consen 62 VKVSGRDVPPHIPTFDEAILGEALAGNIKRSG-----------------------YTKPTPV---QKY------SIPIIS 109 (482)
T ss_pred eeccCCccCCCcccccccchhHHHhhcccccc-----------------------ccCCCcc---eee------ccceee
Confidence 34567788888889998889999999999999 9999999 999 999999
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccC----------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEc
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTD----------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~----------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g 217 (448)
.|++++++|+||||||.+|++|++..+.... ..++++|++|||+||.|+++.++++.... .+++...+|
T Consensus 110 ~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~k~~~~s-~~~~~~~yg 188 (482)
T KOG0335|consen 110 GGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEARKFSYLS-GMKSVVVYG 188 (482)
T ss_pred cCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHHhhcccc-cceeeeeeC
Confidence 9999999999999999999999999875442 25899999999999999999999999887 899999999
Q ss_pred CcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC----CCeEEE
Q psy1548 218 GLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH----TKQVMM 293 (448)
Q Consensus 218 ~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~----~~q~i~ 293 (448)
+.+...+...+..+ ++|+|+||++|.+++..+.+.+.+++++|+||||+|++..+|.+++..++..+.. ..|.++
T Consensus 189 g~~~~~q~~~~~~g-cdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir~iv~~~~~~~~~~~qt~m 267 (482)
T KOG0335|consen 189 GTDLGAQLRFIKRG-CDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIRKIVEQLGMPPKNNRQTLL 267 (482)
T ss_pred CcchhhhhhhhccC-ccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHHHHhcccCCCCccceeEEE
Confidence 99888888888876 9999999999999999999999999999999999999944999999999988753 789999
Q ss_pred EeccCCccHHHHHHHhcCC-CeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCC----CC-----eEEEEECc
Q psy1548 294 FSATLSKEIRPVCKKFMHD-PMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE----FN-----QVVIFVKS 363 (448)
Q Consensus 294 ~SAT~~~~~~~~~~~~l~~-~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~----~~-----~~IIF~~s 363 (448)
||||+|..+..++..++.+ ...+.+... .....++.|...++.+.+|...|.+++.... .+ +++|||.+
T Consensus 268 FSAtfp~~iq~l~~~fl~~~yi~laV~rv-g~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt 346 (482)
T KOG0335|consen 268 FSATFPKEIQRLAADFLKDNYIFLAVGRV-GSTSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVET 346 (482)
T ss_pred EeccCChhhhhhHHHHhhccceEEEEeee-ccccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeec
Confidence 9999999999999988886 666666666 5577899999999999999999999997653 23 79999999
Q ss_pred cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccc
Q psy1548 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443 (448)
Q Consensus 364 ~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~ 443 (448)
++.|..++..|...++++..+||+.++.+|.+.++.|+.|+. -+.++|.-..+++ +|..--++...++|.+++.+.
T Consensus 347 ~~~~d~l~~~l~~~~~~~~sIhg~~tq~er~~al~~Fr~g~~--pvlVaT~VaaRGl--Di~~V~hVInyDmP~d~d~Yv 422 (482)
T KOG0335|consen 347 KRGADELAAFLSSNGYPAKSIHGDRTQIEREQALNDFRNGKA--PVLVATNVAARGL--DIPNVKHVINYDMPADIDDYV 422 (482)
T ss_pred cchhhHHHHHHhcCCCCceeecchhhhhHHHHHHHHhhcCCc--ceEEEehhhhcCC--CCCCCceeEEeecCcchhhHH
Confidence 999999999999999999999999999999999999999994 6778887655555 666667788999999999999
Q ss_pred cccCC
Q psy1548 444 YIEGR 448 (448)
Q Consensus 444 ~~~~~ 448 (448)
+++||
T Consensus 423 HRIGR 427 (482)
T KOG0335|consen 423 HRIGR 427 (482)
T ss_pred Hhccc
Confidence 99998
No 29
>KOG0341|consensus
Probab=100.00 E-value=4.2e-46 Score=347.26 Aligned_cols=339 Identities=25% Similarity=0.373 Sum_probs=301.4
Q ss_pred ccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC
Q psy1548 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g 149 (448)
++|...+.+..+|.++.++..+++.+.+.| +..|+++ |-+ -+|.+++|
T Consensus 160 veGd~ipPPIksF~eMKFP~~~L~~lk~KG-----------------------I~~PTpI---QvQ------GlPvvLsG 207 (610)
T KOG0341|consen 160 VEGDDIPPPIKSFKEMKFPKPLLRGLKKKG-----------------------IVHPTPI---QVQ------GLPVVLSG 207 (610)
T ss_pred eeCCCCCCchhhhhhccCCHHHHHHHHhcC-----------------------CCCCCce---eec------CcceEeec
Confidence 567788888899999999999999999999 9999999 999 99999999
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhc--------cCCCeEEEEeeccHHHHHHHHHHHHHhhccC-----CCceEEEEE
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLET--------TDSNVYVLVMCHTRELAFQISKEYERFSKYM-----SNIKVGVFF 216 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~--------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-----~~~~v~~~~ 216 (448)
+|+|..|-||||||++|.+|++..... ...++..||+||+|+||.|+++.+..+...+ |.+++.++.
T Consensus 208 RDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~~~~~L~e~g~P~lRs~Lci 287 (610)
T KOG0341|consen 208 RDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQYVAALQEAGYPELRSLLCI 287 (610)
T ss_pred CceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhh
Confidence 999999999999999999998765422 2457899999999999999999888776533 578999999
Q ss_pred cCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 217 g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
||.+...+....+.+ .||+|+||++|.+++..+.+++.-++++++||||+|++. +|..++..++..+...+|.++|||
T Consensus 288 GG~~v~eql~~v~~G-vHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDm-GFEddir~iF~~FK~QRQTLLFSA 365 (610)
T KOG0341|consen 288 GGVPVREQLDVVRRG-VHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDM-GFEDDIRTIFSFFKGQRQTLLFSA 365 (610)
T ss_pred cCccHHHHHHHHhcC-eeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhc-cchhhHHHHHHHHhhhhheeeeec
Confidence 999999999999887 999999999999999999999999999999999999998 999999999999999999999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHh
Q psy1548 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376 (448)
Q Consensus 297 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~ 376 (448)
|||..++.+++.-+..|+.+.+....... -++.|.+.++..+.|.-.|.+-+.+.. .+++|||..+..++.+.++|--
T Consensus 366 TMP~KIQ~FAkSALVKPvtvNVGRAGAAs-ldViQevEyVkqEaKiVylLeCLQKT~-PpVLIFaEkK~DVD~IhEYLLl 443 (610)
T KOG0341|consen 366 TMPKKIQNFAKSALVKPVTVNVGRAGAAS-LDVIQEVEYVKQEAKIVYLLECLQKTS-PPVLIFAEKKADVDDIHEYLLL 443 (610)
T ss_pred cccHHHHHHHHhhcccceEEecccccccc-hhHHHHHHHHHhhhhhhhHHHHhccCC-CceEEEeccccChHHHHHHHHH
Confidence 99999999999999999999998875443 445555556677777777777776543 5899999999999999999999
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 377 QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 377 ~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.|..+..+|||-.+++|...++.|+.|++ .++++|+-...++ ++.++-++-.+++|++++++.+++||
T Consensus 444 KGVEavaIHGGKDQedR~~ai~afr~gkK--DVLVATDVASKGL--DFp~iqHVINyDMP~eIENYVHRIGR 511 (610)
T KOG0341|consen 444 KGVEAVAIHGGKDQEDRHYAIEAFRAGKK--DVLVATDVASKGL--DFPDIQHVINYDMPEEIENYVHRIGR 511 (610)
T ss_pred ccceeEEeecCcchhHHHHHHHHHhcCCC--ceEEEecchhccC--CCccchhhccCCChHHHHHHHHHhcc
Confidence 99999999999999999999999999995 7777777544443 66777788889999999999999998
No 30
>KOG4284|consensus
Probab=100.00 E-value=5.5e-43 Score=344.18 Aligned_cols=297 Identities=29% Similarity=0.464 Sum_probs=277.6
Q ss_pred ceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcce
Q psy1548 73 AYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152 (448)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~v 152 (448)
+..+....+|+++.++.+++.+|...+ |..|+++ |.. +||.++.+.|+
T Consensus 18 DV~~~~~~~fe~l~l~r~vl~glrrn~-----------------------f~~ptki---Qaa------AIP~~~~kmDl 65 (980)
T KOG4284|consen 18 DVQSNCTPGFEQLALWREVLLGLRRNA-----------------------FALPTKI---QAA------AIPAIFSKMDL 65 (980)
T ss_pred ccccCCCCCHHHHHHHHHHHHHHHhhc-----------------------ccCCCch---hhh------hhhhhhcccce
Confidence 344556679999999999999999999 9999999 999 99999999999
Q ss_pred eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCC
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
||++..|+|||++|.+.+++.+..+...++++||+|||+++.|+.+.+.+++..+.+.+|.++.||++...+...++.
T Consensus 66 iVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g~~csvfIGGT~~~~d~~rlk~-- 143 (980)
T KOG4284|consen 66 IVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTGARCSVFIGGTAHKLDLIRLKQ-- 143 (980)
T ss_pred EEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccCcceEEEecCchhhhhhhhhhh--
Confidence 999999999999999999999988888899999999999999999999999998879999999999998888887776
Q ss_pred CcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCC
Q psy1548 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~ 312 (448)
++|+|||||++..++..+.+++++++++|+||||.+.+...|..++..|+..+|..+|++++|||.|..+...+.++|.+
T Consensus 144 ~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~slP~~rQv~a~SATYp~nLdn~Lsk~mrd 223 (980)
T KOG4284|consen 144 TRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINSLPQIRQVAAFSATYPRNLDNLLSKFMRD 223 (980)
T ss_pred ceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHhcchhheeeEEeccCchhHHHHHHHHhcc
Confidence 68999999999999999999999999999999999998548999999999999999999999999999999999999999
Q ss_pred CeEEEEcCcccccccceeEEEEEcCcc--------hHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEE
Q psy1548 313 PMEVYVDDEAKLTLHGLQQHYVKLKEN--------EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384 (448)
Q Consensus 313 ~~~i~~~~~~~~~~~~i~~~~~~~~~~--------~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~l 384 (448)
|..+..... ...+-+|+|+++.+.+- .|++.|..+++..+..++||||+...+|+-++.+|+..|++|.++
T Consensus 224 p~lVr~n~~-d~~L~GikQyv~~~~s~nnsveemrlklq~L~~vf~~ipy~QAlVF~~~~sra~~~a~~L~ssG~d~~~I 302 (980)
T KOG4284|consen 224 PALVRFNAD-DVQLFGIKQYVVAKCSPNNSVEEMRLKLQKLTHVFKSIPYVQALVFCDQISRAEPIATHLKSSGLDVTFI 302 (980)
T ss_pred cceeecccC-CceeechhheeeeccCCcchHHHHHHHHHHHHHHHhhCchHHHHhhhhhhhhhhHHHHHhhccCCCeEEe
Confidence 999998777 56778999998876543 388999999999999999999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCC
Q psy1548 385 HRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 385 h~~~~~~eR~~~l~~F~~g~ 404 (448)
.|.|++.+|..+++.++...
T Consensus 303 SgaM~Q~~Rl~a~~~lr~f~ 322 (980)
T KOG4284|consen 303 SGAMSQKDRLLAVDQLRAFR 322 (980)
T ss_pred ccccchhHHHHHHHHhhhce
Confidence 99999999999999999877
No 31
>KOG0334|consensus
Probab=100.00 E-value=8.6e-43 Score=362.06 Aligned_cols=336 Identities=27% Similarity=0.433 Sum_probs=305.3
Q ss_pred hhccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeee
Q psy1548 68 KEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147 (448)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~ 147 (448)
..+.+..++.+..+|.+.++...++..+++.+ |..|++| |.+ +||+++
T Consensus 353 i~v~g~~~pkpv~sW~q~gl~~~il~tlkkl~-----------------------y~k~~~I---Q~q------AiP~Im 400 (997)
T KOG0334|consen 353 IKVKGKECPKPVTSWTQCGLSSKILETLKKLG-----------------------YEKPTPI---QAQ------AIPAIM 400 (997)
T ss_pred eeeccCCCCcccchHhhCCchHHHHHHHHHhc-----------------------CCCCcch---hhh------hcchhc
Confidence 34566678888889999999999999999999 9999999 999 999999
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 222 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 222 (448)
+|+|||.+|.||||||++|++|++.++... ..||.+||++||++|+.|+.+.++.|.+.+ ++++.+++|+....
T Consensus 401 sGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l-~ir~v~vygg~~~~ 479 (997)
T KOG0334|consen 401 SGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLL-GIRVVCVYGGSGIS 479 (997)
T ss_pred cCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhc-CceEEEecCCccHH
Confidence 999999999999999999999999766332 358999999999999999999999999998 99999999999999
Q ss_pred HhHHHHhcCCCcEEEEcHHHHHHHHHCCCC---cCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 223 KDEEYLKTHNPQIVVGTPGRILALVRNKKL---NLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 223 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
.++..++++ +.|+||||+++.+++..+.- ++.++.++|+||||+|++. +|.+++..|+..+++.+|++++|||+|
T Consensus 480 ~qiaelkRg-~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfdm-gfePq~~~Ii~nlrpdrQtvlfSatfp 557 (997)
T KOG0334|consen 480 QQIAELKRG-AEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFDM-GFEPQITRILQNLRPDRQTVLFSATFP 557 (997)
T ss_pred HHHHHHhcC-CceEEeccchhhhhHhhcCCccccccccceeeechhhhhhee-ccCcccchHHhhcchhhhhhhhhhhhh
Confidence 999999998 99999999999998866544 4555569999999999987 999999999999999999999999999
Q ss_pred ccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcC-cchHHHHHHHHHhhC-CCCeEEEEECccHHHHHHHHHHHhC
Q psy1548 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK-ENEKNKKLFELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQ 377 (448)
Q Consensus 300 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~ 377 (448)
..++.+++..+..|+.+.+... ......+.+.+..+. +.+|+..|.++|... ..+++||||.+...|..+...|.+.
T Consensus 558 r~m~~la~~vl~~Pveiiv~~~-svV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~e~~~tiiFv~~qe~~d~l~~~L~~a 636 (997)
T KOG0334|consen 558 RSMEALARKVLKKPVEIIVGGR-SVVCKEVTQVVRVCAIENEKFLKLLELLGERYEDGKTIIFVDKQEKADALLRDLQKA 636 (997)
T ss_pred HHHHHHHHHhhcCCeeEEEccc-eeEeccceEEEEEecCchHHHHHHHHHHHHHhhcCCEEEEEcCchHHHHHHHHHHhc
Confidence 9999999999999999888766 556678889988888 789999999999764 5679999999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEE
Q psy1548 378 NFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGLAITF 411 (448)
Q Consensus 378 g~~~~~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~ 411 (448)
|+++..+||+.++.+|..++++|+++. +|.+++|
T Consensus 637 g~~~~slHGgv~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~gRTgragrkg~AvtF 716 (997)
T KOG0334|consen 637 GYNCDSLHGGVDQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRVGRTGRAGRKGAAVTF 716 (997)
T ss_pred CcchhhhcCCCchHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHhcccccCCccceeEEE
Confidence 999999999999999999999999998 8999999
Q ss_pred ecChhhHHHHHHHHHHhcCCCCCCCcccc
Q psy1548 412 ASDENDAKILNNVQDRFDVSISELPDEID 440 (448)
Q Consensus 412 ~t~~~d~~~l~~i~~~~~~~~~~~p~~~~ 440 (448)
++.. +..+.-.|.+.+...-+.+|..+.
T Consensus 717 i~p~-q~~~a~dl~~al~~~~~~~P~~l~ 744 (997)
T KOG0334|consen 717 ITPD-QLKYAGDLCKALELSKQPVPKLLQ 744 (997)
T ss_pred eChH-HhhhHHHHHHHHHhccCCCchHHH
Confidence 9984 778888999999888888887654
No 32
>KOG0347|consensus
Probab=100.00 E-value=4.6e-43 Score=339.80 Aligned_cols=329 Identities=28% Similarity=0.459 Sum_probs=284.4
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC-cceeeecc
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG-MDILCQAK 157 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g-~~vli~ap 157 (448)
.+.|..+.++.+++++|...| |..|++| |.. .+|.+..| .|++..|.
T Consensus 180 vsAW~~l~lp~~iL~aL~~~g-----------------------Fs~Pt~I---Qsl------~lp~ai~gk~DIlGaAe 227 (731)
T KOG0347|consen 180 VSAWKNLFLPMEILRALSNLG-----------------------FSRPTEI---QSL------VLPAAIRGKVDILGAAE 227 (731)
T ss_pred hHHHhcCCCCHHHHHHHHhcC-----------------------CCCCccc---hhh------cccHhhccchhcccccc
Confidence 456999999999999999999 9999999 999 99999999 79999999
Q ss_pred CCChhHHHHHHHHHHhhhcc-----------CCCeE--EEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 158 SGMGKTAVFVLATLQQLETT-----------DSNVY--VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~-----------~~~~~--~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
||||||++|.+|++..+... ..+++ +||++|||+||.|+.+.+..+.... ++++..++||.....|
T Consensus 228 TGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~~Hl~ai~~~t-~i~v~si~GGLavqKQ 306 (731)
T KOG0347|consen 228 TGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVKQHLKAIAEKT-QIRVASITGGLAVQKQ 306 (731)
T ss_pred cCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHHHHHHHhcccc-CeEEEEeechhHHHHH
Confidence 99999999999999955332 12344 9999999999999999999999987 9999999999999999
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHCCCC---cCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-----CCCeEEEEec
Q psy1548 225 EEYLKTHNPQIVVGTPGRILALVRNKKL---NLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-----HTKQVMMFSA 296 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~~l~~~~~---~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-----~~~q~i~~SA 296 (448)
.+.+.. +|+|+|+|||+|+.++..+.. .+++++++|+||+|+|++. +.-..+..+++.+. +..|.+.|||
T Consensus 307 qRlL~~-~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek-ghF~Els~lL~~L~e~~~~~qrQTlVFSA 384 (731)
T KOG0347|consen 307 QRLLNQ-RPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK-GHFEELSKLLKHLNEEQKNRQRQTLVFSA 384 (731)
T ss_pred HHHHhc-CCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh-ccHHHHHHHHHHhhhhhcccccceEEEEE
Confidence 888877 599999999999999988655 5788999999999999998 88888999888775 3569999999
Q ss_pred cCCc---------------------cHHHHHHH--hcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCC
Q psy1548 297 TLSK---------------------EIRPVCKK--FMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE 353 (448)
Q Consensus 297 T~~~---------------------~~~~~~~~--~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~ 353 (448)
|++- .++.++.. +...|..|...+. ..+...+....+.|+..+|.-.|+.+|..++
T Consensus 385 Tlt~~~~~~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkiiD~t~q-~~ta~~l~Es~I~C~~~eKD~ylyYfl~ryP 463 (731)
T KOG0347|consen 385 TLTLVLQQPLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKIIDLTPQ-SATASTLTESLIECPPLEKDLYLYYFLTRYP 463 (731)
T ss_pred EeehhhcChhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeEecCcc-hhHHHHHHHHhhcCCccccceeEEEEEeecC
Confidence 9643 12223222 3346777777666 5566777777888888888888888887765
Q ss_pred CCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCC
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS 433 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~ 433 (448)
|++|||||+...+.+|+-.|+..+++...+|+.|.+.+|.+.+++|++..+ +++++|+-.-+++ +|...-++..+
T Consensus 464 -GrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QKqRLknLEkF~~~~~--~VLiaTDVAARGL--DIp~V~HVIHY 538 (731)
T KOG0347|consen 464 -GRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQKQRLKNLEKFKQSPS--GVLIATDVAARGL--DIPGVQHVIHY 538 (731)
T ss_pred -CceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHHHHHHhHHHHhcCCC--eEEEeehhhhccC--CCCCcceEEEe
Confidence 689999999999999999999999999999999999999999999999774 7888888766666 88888899999
Q ss_pred CCCccccccccccCC
Q psy1548 434 ELPDEIDLSTYIEGR 448 (448)
Q Consensus 434 ~~p~~~~~~~~~~~~ 448 (448)
.+|-..+.|.++-||
T Consensus 539 qVPrtseiYVHRSGR 553 (731)
T KOG0347|consen 539 QVPRTSEIYVHRSGR 553 (731)
T ss_pred ecCCccceeEecccc
Confidence 999999999999887
No 33
>KOG0348|consensus
Probab=100.00 E-value=2e-42 Score=334.40 Aligned_cols=334 Identities=26% Similarity=0.391 Sum_probs=273.8
Q ss_pred eccCCcccCCCCHHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeee
Q psy1548 77 IHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155 (448)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ 155 (448)
+....|..+|+++.+...|.. ++ +..|+.+ |++ +||.++.|+|++|.
T Consensus 133 fts~~f~~LGL~~~lv~~L~~~m~-----------------------i~~pTsV---Qkq------~IP~lL~grD~lV~ 180 (708)
T KOG0348|consen 133 FTSAAFASLGLHPHLVSHLNTKMK-----------------------ISAPTSV---QKQ------AIPVLLEGRDALVR 180 (708)
T ss_pred cccccchhcCCCHHHHHHHHHHhc-----------------------cCccchH---hhc------chhhhhcCcceEEE
Confidence 456789999999999999965 46 8999999 999 99999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhc------cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 156 AKSGMGKTAVFVLATLQQLET------TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 156 apTGsGKT~~~~l~~l~~l~~------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
++||||||++|++|+++.+.. +..|+.+||++||||||.|+++.+.++.+.+-=+-.+.+.||.....+...++
T Consensus 181 aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~hWIVPg~lmGGEkkKSEKARLR 260 (708)
T KOG0348|consen 181 AQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPFHWIVPGVLMGGEKKKSEKARLR 260 (708)
T ss_pred cCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCceEEeeceeecccccccHHHHHh
Confidence 999999999999999998743 34678999999999999999999999988652345577889988888888888
Q ss_pred cCCCcEEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-------------CCCCeEEEEe
Q psy1548 230 THNPQIVVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-------------PHTKQVMMFS 295 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-------------~~~~q~i~~S 295 (448)
.| ++|+|+|||+|.+.+++ ..+.+++++|+|+||+|++++. ||..++..|++.+ |+..|-+++|
T Consensus 261 KG-iNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleL-Gfekdit~Il~~v~~~~~~e~~~~~lp~q~q~mLlS 338 (708)
T KOG0348|consen 261 KG-INILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLEL-GFEKDITQILKAVHSIQNAECKDPKLPHQLQNMLLS 338 (708)
T ss_pred cC-ceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhc-cchhhHHHHHHHHhhccchhcccccccHHHHhHhhh
Confidence 87 99999999999999987 6788999999999999999998 9999999998876 2245889999
Q ss_pred ccCCccHHHHHHHhcCCCeEEEEcCcc------------------------cccccceeEEEEEcCcchHHHHHHHHHhh
Q psy1548 296 ATLSKEIRPVCKKFMHDPMEVYVDDEA------------------------KLTLHGLQQHYVKLKENEKNKKLFELLDV 351 (448)
Q Consensus 296 AT~~~~~~~~~~~~l~~~~~i~~~~~~------------------------~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 351 (448)
||+++.+..+....++||+.|..+... ...+..+.|.|..+++.-++-.|..+|.+
T Consensus 339 ATLtd~V~rLa~~sLkDpv~I~ld~s~~~~~p~~~a~~ev~~~~~~~~l~~~~iPeqL~qry~vVPpKLRLV~Laa~L~~ 418 (708)
T KOG0348|consen 339 ATLTDGVNRLADLSLKDPVYISLDKSHSQLNPKDKAVQEVDDGPAGDKLDSFAIPEQLLQRYTVVPPKLRLVALAALLLN 418 (708)
T ss_pred hhhHHHHHHHhhccccCceeeeccchhhhcCcchhhhhhcCCcccccccccccCcHHhhhceEecCCchhHHHHHHHHHH
Confidence 999999999999999999988832110 12345678889999998888777777755
Q ss_pred C----CCCeEEEEECccHHHHHHHHHHHhC----------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCC
Q psy1548 352 L----EFNQVVIFVKSVTRCIALSTLLSEQ----------------------NFPAVSIHRGMTQEERLKKYQEFKDFHK 405 (448)
Q Consensus 352 ~----~~~~~IIF~~s~~~a~~l~~~L~~~----------------------g~~~~~lh~~~~~~eR~~~l~~F~~g~~ 405 (448)
. ...++|||+.+.+.++.=+..|... +..+.-+||+|++++|..+++.|...+.
T Consensus 419 ~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~~~ 498 (708)
T KOG0348|consen 419 KVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHSRR 498 (708)
T ss_pred HhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCchhHHHHHHHHHhhccccc
Confidence 3 4558999999999999988877642 3358899999999999999999999775
Q ss_pred ceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 406 g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+|++||+-.-+++ ++-+.-.+.-++-|...+.+.++.||
T Consensus 499 --~VLLcTDVAaRGL--DlP~V~~vVQYd~P~s~adylHRvGR 537 (708)
T KOG0348|consen 499 --AVLLCTDVAARGL--DLPHVGLVVQYDPPFSTADYLHRVGR 537 (708)
T ss_pred --eEEEehhhhhccC--CCCCcCeEEEeCCCCCHHHHHHHhhh
Confidence 6999998643332 22222222234446666677777776
No 34
>KOG0337|consensus
Probab=100.00 E-value=2.6e-40 Score=311.83 Aligned_cols=322 Identities=25% Similarity=0.384 Sum_probs=294.9
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
+.+|..++|+..+++++.+.| |+.|+|+ |+. .+|.++.|+|++..+-|
T Consensus 20 ~g~fqsmgL~~~v~raI~kkg-----------------------~~~ptpi---qRK------TipliLe~~dvv~mart 67 (529)
T KOG0337|consen 20 SGGFQSMGLDYKVLRAIHKKG-----------------------FNTPTPI---QRK------TIPLILEGRDVVGMART 67 (529)
T ss_pred CCCccccCCCHHHHHHHHHhh-----------------------cCCCCch---hcc------cccceeeccccceeeec
Confidence 678999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 159 GMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
|||||.||++|+++.+... ..+.+++++.||++|+.|+.+.++.+++.. ++++.+++|+....++...+..+ |||++
T Consensus 68 gsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt-~lr~s~~~ggD~~eeqf~~l~~n-pDii~ 145 (529)
T KOG0337|consen 68 GSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGT-KLRQSLLVGGDSIEEQFILLNEN-PDIII 145 (529)
T ss_pred CCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhcccc-chhhhhhcccchHHHHHHHhccC-CCEEE
Confidence 9999999999999998654 356899999999999999999999999998 99999999999999888888765 99999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||++++.+.-+-.+.++.+.|+|+||+|.+++. +|..++.+++..+|...|.++||||+|..+.++.+..+.+|..+.
T Consensus 146 ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l~rl~~~~QTllfSatlp~~lv~fakaGl~~p~lVR 224 (529)
T KOG0337|consen 146 ATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEILSRLPESRQTLLFSATLPRDLVDFAKAGLVPPVLVR 224 (529)
T ss_pred ecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHHHhCCCcceEEEEeccCchhhHHHHHccCCCCceEE
Confidence 9999999887776788999999999999999998 999999999999999999999999999999999999999999999
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCC-CCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLE-FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKK 396 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~-~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~ 396 (448)
++-+ ......++..+..+.+++|...|..++...- ..+++|||.|..+++.+...|+..|+.+..++|.|.+..|..-
T Consensus 225 ldve-tkise~lk~~f~~~~~a~K~aaLl~il~~~~~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~ 303 (529)
T KOG0337|consen 225 LDVE-TKISELLKVRFFRVRKAEKEAALLSILGGRIKDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKIN 303 (529)
T ss_pred eehh-hhcchhhhhheeeeccHHHHHHHHHHHhccccccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhc
Confidence 7776 4456778889999999999999999998763 4589999999999999999999999999999999999999999
Q ss_pred HHHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcC
Q psy1548 397 YQEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDV 430 (448)
Q Consensus 397 l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~ 430 (448)
+.+|+.++ .|.+.+|++.. |..++-+++.+++.
T Consensus 304 ~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragrtg~aYs~V~~~-~~~yl~DL~lflgr 382 (529)
T KOG0337|consen 304 GRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGRTGRAYSLVAST-DDPYLLDLQLFLGR 382 (529)
T ss_pred cccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccccceEEEEEecc-cchhhhhhhhhcCC
Confidence 99999988 78889999877 66677788888887
Q ss_pred CCCCCCc
Q psy1548 431 SISELPD 437 (448)
Q Consensus 431 ~~~~~p~ 437 (448)
++...+.
T Consensus 383 ~~~~~~~ 389 (529)
T KOG0337|consen 383 PLIFAIS 389 (529)
T ss_pred ceeeccc
Confidence 6655443
No 35
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=4.9e-39 Score=343.04 Aligned_cols=314 Identities=15% Similarity=0.212 Sum_probs=246.1
Q ss_pred CCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHH
Q psy1548 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~ 165 (448)
.+++.+.+++.+.| |..|+++ |.+ ++|.++.|+|+++++|||||||++
T Consensus 20 ~l~~~l~~~L~~~g-----------------------~~~p~~~---Q~~------ai~~il~G~nvvv~apTGSGKTla 67 (742)
T TIGR03817 20 WAHPDVVAALEAAG-----------------------IHRPWQH---QAR------AAELAHAGRHVVVATGTASGKSLA 67 (742)
T ss_pred cCCHHHHHHHHHcC-----------------------CCcCCHH---HHH------HHHHHHCCCCEEEECCCCCcHHHH
Confidence 37899999999999 9999999 999 999999999999999999999999
Q ss_pred HHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHH
Q psy1548 166 FVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245 (448)
Q Consensus 166 ~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~ 245 (448)
|++|+++.+... .+.++|||+||++|+.|+.+.++.+. .. ++++..+.|+.+. .+...+..+ ++|+|+||+++..
T Consensus 68 ~~LPiL~~l~~~-~~~~aL~l~PtraLa~q~~~~l~~l~-~~-~i~v~~~~Gdt~~-~~r~~i~~~-~~IivtTPd~L~~ 142 (742)
T TIGR03817 68 YQLPVLSALADD-PRATALYLAPTKALAADQLRAVRELT-LR-GVRPATYDGDTPT-EERRWAREH-ARYVLTNPDMLHR 142 (742)
T ss_pred HHHHHHHHHhhC-CCcEEEEEcChHHHHHHHHHHHHHhc-cC-CeEEEEEeCCCCH-HHHHHHhcC-CCEEEEChHHHHH
Confidence 999999998664 35699999999999999999999987 33 7888888888764 344455554 8999999999875
Q ss_pred HHHCC----CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH-------hCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 246 LVRNK----KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR-------SSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 246 ~l~~~----~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~-------~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
.+... ...+++++++|+||||.|.+ .|...+..+++ ..+.+.|++++|||+++.. +++.+++..|.
T Consensus 143 ~~L~~~~~~~~~l~~l~~vViDEah~~~g--~fg~~~~~il~rL~ri~~~~g~~~q~i~~SATi~n~~-~~~~~l~g~~~ 219 (742)
T TIGR03817 143 GILPSHARWARFLRRLRYVVIDECHSYRG--VFGSHVALVLRRLRRLCARYGASPVFVLASATTADPA-AAASRLIGAPV 219 (742)
T ss_pred hhccchhHHHHHHhcCCEEEEeChhhccC--ccHHHHHHHHHHHHHHHHhcCCCCEEEEEecCCCCHH-HHHHHHcCCCe
Confidence 43221 12378999999999999865 35555444433 3456789999999999875 46778888886
Q ss_pred EEEEcCcccccccceeEEEEEcCc-----------------chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC
Q psy1548 315 EVYVDDEAKLTLHGLQQHYVKLKE-----------------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377 (448)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~-----------------~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~ 377 (448)
.+. ... . .+....+...+.+. .++...+..+++. +.++||||+|++.|+.++..|++.
T Consensus 220 ~~i-~~~-~-~~~~~~~~~~~~p~~~~~~~~~~~~~r~~~~~~~~~~l~~l~~~--~~~~IVF~~sr~~ae~l~~~l~~~ 294 (742)
T TIGR03817 220 VAV-TED-G-SPRGARTVALWEPPLTELTGENGAPVRRSASAEAADLLADLVAE--GARTLTFVRSRRGAELVAAIARRL 294 (742)
T ss_pred EEE-CCC-C-CCcCceEEEEecCCccccccccccccccchHHHHHHHHHHHHHC--CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 543 222 1 12222222222211 2355566666664 569999999999999999998763
Q ss_pred --------CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 378 --------NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 378 --------g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+..+..+||+|++++|.+++++|++|+ +.+.++|+.-.+++ +|.+.--+-..++|.+...+.++.||
T Consensus 295 l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~~G~--i~vLVaTd~lerGI--DI~~vd~VI~~~~P~s~~~y~qRiGR 369 (742)
T TIGR03817 295 LGEVDPDLAERVAAYRAGYLPEDRRELERALRDGE--LLGVATTNALELGV--DISGLDAVVIAGFPGTRASLWQQAGR 369 (742)
T ss_pred HHhhccccccchhheecCCCHHHHHHHHHHHHcCC--ceEEEECchHhccC--CcccccEEEEeCCCCCHHHHHHhccc
Confidence 567899999999999999999999998 57888888655555 66666667788899999999999998
No 36
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.9e-36 Score=307.38 Aligned_cols=302 Identities=17% Similarity=0.164 Sum_probs=224.6
Q ss_pred eeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 118 ~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
..+++|..|+++ |++ +++.++.|+|+++++|||+|||++|++|++.. +..+||++|+++|+.|+.
T Consensus 4 ~~~~g~~~~r~~---Q~~------ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~~------~~~~lVi~P~~~L~~dq~ 68 (470)
T TIGR00614 4 KTVFGLSSFRPV---QLE------VINAVLLGRDCFVVMPTGGGKSLCYQLPALCS------DGITLVISPLISLMEDQV 68 (470)
T ss_pred HhhcCCCCCCHH---HHH------HHHHHHcCCCEEEEcCCCCcHhHHHHHHHHHc------CCcEEEEecHHHHHHHHH
Confidence 344568999998 999 99999999999999999999999999999863 347999999999999988
Q ss_pred HHHHHhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHH-HCCCC-cCCCeeEEEecchhHHHhh-
Q psy1548 198 KEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALV-RNKKL-NLSLLKHFILDECDKMLEQ- 271 (448)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l-~~~~~-~~~~i~~lViDEah~l~~~- 271 (448)
+.+..+ ++.+..+.++....... ..+..+.++|+++||+++.... ....+ ...+++++||||||++.+|
T Consensus 69 ~~l~~~-----gi~~~~l~~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g 143 (470)
T TIGR00614 69 LQLKAS-----GIPATFLNSSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWG 143 (470)
T ss_pred HHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccc
Confidence 887754 67777777776544322 2334556899999999975321 00111 4678999999999999987
Q ss_pred hhhHHHHHHH--HHhCCCCCeEEEEeccCCccHHHHHHHhc--CCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHH
Q psy1548 272 LEMRRDVQEI--FRSSPHTKQVMMFSATLSKEIRPVCKKFM--HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFE 347 (448)
Q Consensus 272 ~~~~~~~~~i--~~~l~~~~q~i~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ 347 (448)
.+|+..+..+ +....++.|++++|||+++.+...+...+ .+|..+..... .+++...... ........+..
T Consensus 144 ~~fr~~~~~l~~l~~~~~~~~~l~lTAT~~~~~~~di~~~l~l~~~~~~~~s~~----r~nl~~~v~~-~~~~~~~~l~~ 218 (470)
T TIGR00614 144 HDFRPDYKALGSLKQKFPNVPIMALTATASPSVREDILRQLNLKNPQIFCTSFD----RPNLYYEVRR-KTPKILEDLLR 218 (470)
T ss_pred cccHHHHHHHHHHHHHcCCCceEEEecCCCHHHHHHHHHHcCCCCCcEEeCCCC----CCCcEEEEEe-CCccHHHHHHH
Confidence 2477777665 23333577899999999998766655543 35554433222 2334322222 22234555666
Q ss_pred HHh-hCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHH
Q psy1548 348 LLD-VLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQD 426 (448)
Q Consensus 348 ll~-~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~ 426 (448)
++. ...+.++||||+|+++|+.++..|++.|+.+..+||+|++++|.+++++|++|+ +.|+++|+...+++ ++.+
T Consensus 219 ~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g~--~~vLVaT~~~~~GI--D~p~ 294 (470)
T TIGR00614 219 FIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRDE--IQVVVATVAFGMGI--NKPD 294 (470)
T ss_pred HHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcCC--CcEEEEechhhccC--Cccc
Confidence 665 445567799999999999999999999999999999999999999999999987 57788887543433 4444
Q ss_pred HhcCCCCCCCccccccccccCC
Q psy1548 427 RFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 427 ~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.--+-...+|.++..+.++.||
T Consensus 295 V~~VI~~~~P~s~~~y~Qr~GR 316 (470)
T TIGR00614 295 VRFVIHYSLPKSMESYYQESGR 316 (470)
T ss_pred ceEEEEeCCCCCHHHHHhhhcC
Confidence 4455667889999999999998
No 37
>KOG0344|consensus
Probab=100.00 E-value=7.9e-36 Score=293.27 Aligned_cols=336 Identities=25% Similarity=0.309 Sum_probs=282.7
Q ss_pred ccCceeeeccCCccc----CCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee
Q psy1548 70 VKGAYVSIHSSGFRD----FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~ 145 (448)
+.|...+.....|.+ +..++.+++.+.+.+ |..|+++ |.+ ++|.
T Consensus 122 v~G~~~~~~l~~f~~lt~~~~~~~~ll~nl~~~~-----------------------F~~Pt~i---q~~------aipv 169 (593)
T KOG0344|consen 122 VDGFHLPPPLLSFSDLTYDYSMNKRLLENLQELG-----------------------FDEPTPI---QKQ------AIPV 169 (593)
T ss_pred ccCCCCCCccccccccchhhhhcHHHHHhHhhCC-----------------------CCCCCcc---cch------hhhh
Confidence 345454555556664 667899999999999 9999999 999 9999
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhh--ccCCCceEEEEEcC
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFS--KYMSNIKVGVFFGG 218 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~--~~~~~~~v~~~~g~ 218 (448)
++.+++++.++|||+|||++|.+|+++++... ..+.+++|+.||++|+.|++.++.++. ... ..++..+...
T Consensus 170 fl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~~~~~t-~~~a~~~~~~ 248 (593)
T KOG0344|consen 170 FLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYSIDEGT-SLRAAQFSKP 248 (593)
T ss_pred hhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcCCCCCC-chhhhhcccc
Confidence 99999999999999999999999999988432 467899999999999999999999998 444 4444444333
Q ss_pred cccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC--CcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEe
Q psy1548 219 LPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK--LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFS 295 (448)
Q Consensus 219 ~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~S 295 (448)
.........+....++|+|+||-++..++..+. +++..+.++|+||+|++.+...|..++..|+..+. ++..+-+||
T Consensus 249 ~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~Qla~I~sac~s~~i~~a~FS 328 (593)
T KOG0344|consen 249 AYPSQKPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVEQLADIYSACQSPDIRVALFS 328 (593)
T ss_pred cchhhccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHHHHHHHHHHhcCcchhhhhhh
Confidence 221222222222237999999999999998865 78999999999999999886578999999988765 566788999
Q ss_pred ccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHH
Q psy1548 296 ATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374 (448)
Q Consensus 296 AT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L 374 (448)
||++..+++++...+.++..+.+... ......+.|..+.+.+ ..|.-++..++...-..+++||+.+.++|..|+..|
T Consensus 329 at~~~~VEE~~~~i~~~~~~vivg~~-~sa~~~V~QelvF~gse~~K~lA~rq~v~~g~~PP~lIfVQs~eRak~L~~~L 407 (593)
T KOG0344|consen 329 ATISVYVEEWAELIKSDLKRVIVGLR-NSANETVDQELVFCGSEKGKLLALRQLVASGFKPPVLIFVQSKERAKQLFEEL 407 (593)
T ss_pred ccccHHHHHHHHHhhccceeEEEecc-hhHhhhhhhhheeeecchhHHHHHHHHHhccCCCCeEEEEecHHHHHHHHHHh
Confidence 99999999999999999999988777 4456678787777765 568999999999887779999999999999999999
Q ss_pred -HhCCCcEEEEeCCCCHHHHHHHHHHHhcCC----------------------------------------------Cce
Q psy1548 375 -SEQNFPAVSIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGL 407 (448)
Q Consensus 375 -~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~ 407 (448)
.-.++++.++||+.++.+|.++++.|+.|+ .|.
T Consensus 408 ~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~g~ 487 (593)
T KOG0344|consen 408 EIYDNINVDVIHGERSQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRSGK 487 (593)
T ss_pred hhccCcceeeEecccchhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCCcc
Confidence 556899999999999999999999999999 899
Q ss_pred EEEEecChhhHHHHHHHHHHhcCCCCCCCcccc
Q psy1548 408 AITFASDENDAKILNNVQDRFDVSISELPDEID 440 (448)
Q Consensus 408 ~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~ 440 (448)
+|+|.|++ |.+.++.|........+++|.++.
T Consensus 488 Aitfytd~-d~~~ir~iae~~~~sG~evpe~~m 519 (593)
T KOG0344|consen 488 AITFYTDQ-DMPRIRSIAEVMEQSGCEVPEKIM 519 (593)
T ss_pred eEEEeccc-cchhhhhHHHHHHHcCCcchHHHH
Confidence 99999987 999999999999999999999864
No 38
>KOG0350|consensus
Probab=100.00 E-value=7.1e-36 Score=287.22 Aligned_cols=311 Identities=23% Similarity=0.312 Sum_probs=258.7
Q ss_pred ccCCCCchhhhhhhccccccceee---------eeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKA---------VLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTREL 192 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~---------~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L 192 (448)
...-+|+ |.. .+|.+ ..++|+.|.||||||||++|.+|+++.+..+ -+..+++||+||++|
T Consensus 157 is~~FPV---Q~a------Vlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L 227 (620)
T KOG0350|consen 157 ISRLFPV---QYA------VLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTREL 227 (620)
T ss_pred cccccch---HHH------HHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHH
Confidence 6777788 877 66555 3478999999999999999999999998766 355899999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCC----cEEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhH
Q psy1548 193 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP----QIVVGTPGRILALVRN-KKLNLSLLKHFILDECDK 267 (448)
Q Consensus 193 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~----~IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~ 267 (448)
+.|+++.+.++.... ++.|+.+.|..+...+...+....+ +|+|+||++|.+.+.+ +.+++++++++||||||+
T Consensus 228 ~~QV~~~f~~~~~~t-gL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADR 306 (620)
T KOG0350|consen 228 ALQVYDTFKRLNSGT-GLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADR 306 (620)
T ss_pred HHHHHHHHHHhccCC-ceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHH
Confidence 999999999999988 8999999999998888888876656 9999999999999984 789999999999999999
Q ss_pred HHhhhhhHHHHHHHHHhCC----------------------------------CCCeEEEEeccCCccHHHHHHHhcCCC
Q psy1548 268 MLEQLEMRRDVQEIFRSSP----------------------------------HTKQVMMFSATLSKEIRPVCKKFMHDP 313 (448)
Q Consensus 268 l~~~~~~~~~~~~i~~~l~----------------------------------~~~q~i~~SAT~~~~~~~~~~~~l~~~ 313 (448)
|++. .|-..+..++..+. +..+.+.+|||+...-..+...-+..|
T Consensus 307 ll~q-sfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l~~P 385 (620)
T KOG0350|consen 307 LLDQ-SFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTLHIP 385 (620)
T ss_pred HHHH-HHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhcCCC
Confidence 9987 66555555443322 122468899999888788887778888
Q ss_pred eEEEEcC---cccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHH----hCCCcEEEEeC
Q psy1548 314 MEVYVDD---EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLS----EQNFPAVSIHR 386 (448)
Q Consensus 314 ~~i~~~~---~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~----~~g~~~~~lh~ 386 (448)
....+.. .....+..+.++++.++...|.-.++.++......++|+|+++...+.+++..|+ +..+++..+.|
T Consensus 386 rl~~v~~~~~~ryslp~~l~~~~vv~~~~~kpl~~~~lI~~~k~~r~lcf~~S~~sa~Rl~~~L~v~~~~~~~~~s~~t~ 465 (620)
T KOG0350|consen 386 RLFHVSKPLIGRYSLPSSLSHRLVVTEPKFKPLAVYALITSNKLNRTLCFVNSVSSANRLAHVLKVEFCSDNFKVSEFTG 465 (620)
T ss_pred ceEEeecccceeeecChhhhhceeecccccchHhHHHHHHHhhcceEEEEecchHHHHHHHHHHHHHhccccchhhhhhh
Confidence 6555442 2234567788888888888899999999999989999999999999999999887 34678888999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 387 GMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++...|.+.++.|..|+ +-+++|++.--+++ ++-+.-++-.++.|.+.-.+.++.||
T Consensus 466 ~l~~k~r~k~l~~f~~g~--i~vLIcSD~laRGi--Dv~~v~~VINYd~P~~~ktyVHR~GR 523 (620)
T KOG0350|consen 466 QLNGKRRYKMLEKFAKGD--INVLICSDALARGI--DVNDVDNVINYDPPASDKTYVHRAGR 523 (620)
T ss_pred hhhHHHHHHHHHHHhcCC--ceEEEehhhhhcCC--cccccceEeecCCCchhhHHHHhhcc
Confidence 999999999999999977 78888888644443 66667777788899988888888887
No 39
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-35 Score=316.68 Aligned_cols=298 Identities=17% Similarity=0.162 Sum_probs=222.9
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|..++++ |++ +|+.++.|+|+++.+|||+|||+||++|++.. +..+|||+|+++|+.++...+..
T Consensus 458 ~~sFRp~---Q~e------aI~aiL~GrDVLVimPTGSGKSLcYQLPAL~~------~GiTLVISPLiSLmqDQV~~L~~ 522 (1195)
T PLN03137 458 NHSFRPN---QRE------IINATMSGYDVFVLMPTGGGKSLTYQLPALIC------PGITLVISPLVSLIQDQIMNLLQ 522 (1195)
T ss_pred CCCCCHH---HHH------HHHHHHcCCCEEEEcCCCccHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHh
Confidence 7778888 999 99999999999999999999999999999864 34799999999999865555544
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhc-----CCCcEEEEcHHHHHH---HHHC--CCCcCCCeeEEEecchhHHHhh-
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKT-----HNPQIVVGTPGRILA---LVRN--KKLNLSLLKHFILDECDKMLEQ- 271 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~-----~~~~IlV~Tp~~l~~---~l~~--~~~~~~~i~~lViDEah~l~~~- 271 (448)
. ++++..+.++.....+...+.. +.++|+|+||+++.. ++.. .......+.+|||||||++++|
T Consensus 523 ~-----GI~Aa~L~s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWG 597 (1195)
T PLN03137 523 A-----NIPAASLSAGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWG 597 (1195)
T ss_pred C-----CCeEEEEECCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcc
Confidence 2 7888899998887666554432 568999999999852 2221 1112345889999999999998
Q ss_pred hhhHHHHHHH--HHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcch-HHHHHHHH
Q psy1548 272 LEMRRDVQEI--FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-KNKKLFEL 348 (448)
Q Consensus 272 ~~~~~~~~~i--~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~l 348 (448)
++|++.+..+ ++...+..|++++|||++..+...+...+.....+..... ...+++... .+.... ....+..+
T Consensus 598 hDFRpdYr~L~~Lr~~fp~vPilALTATAT~~V~eDI~~~L~l~~~~vfr~S--f~RpNL~y~--Vv~k~kk~le~L~~~ 673 (1195)
T PLN03137 598 HDFRPDYQGLGILKQKFPNIPVLALTATATASVKEDVVQALGLVNCVVFRQS--FNRPNLWYS--VVPKTKKCLEDIDKF 673 (1195)
T ss_pred cchHHHHHHHHHHHHhCCCCCeEEEEecCCHHHHHHHHHHcCCCCcEEeecc--cCccceEEE--EeccchhHHHHHHHH
Confidence 3488888764 4444457889999999999888766655542222211111 223344322 222222 24556666
Q ss_pred HhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHH
Q psy1548 349 LDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDR 427 (448)
Q Consensus 349 l~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~ 427 (448)
+... ...+.||||+|++.|+.++..|++.|+.+..|||+|++++|..++++|++|+ +.|+++|....+++ ++.+.
T Consensus 674 I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~Ge--i~VLVATdAFGMGI--DkPDV 749 (1195)
T PLN03137 674 IKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKDE--INIICATVAFGMGI--NKPDV 749 (1195)
T ss_pred HHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcCC--CcEEEEechhhcCC--CccCC
Confidence 6543 3568999999999999999999999999999999999999999999999988 57778887643433 44444
Q ss_pred hcCCCCCCCccccccccccCC
Q psy1548 428 FDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 428 ~~~~~~~~p~~~~~~~~~~~~ 448 (448)
--|-...+|.+++.+.++.||
T Consensus 750 R~VIHydlPkSiEsYyQriGR 770 (1195)
T PLN03137 750 RFVIHHSLPKSIEGYHQECGR 770 (1195)
T ss_pred cEEEEcCCCCCHHHHHhhhcc
Confidence 446678889999999999998
No 40
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=4.5e-35 Score=318.53 Aligned_cols=318 Identities=19% Similarity=0.231 Sum_probs=226.7
Q ss_pred CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHH
Q psy1548 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
+++.+.+|+.+ + |..|+++ |.+ +||.++.|+|++++||||||||++|
T Consensus 18 l~~~v~~~~~~-~-----------------------~~~~tpi---Q~~------Ai~~il~g~nvli~APTGSGKTlaa 64 (876)
T PRK13767 18 LRPYVREWFKE-K-----------------------FGTFTPP---QRY------AIPLIHEGKNVLISSPTGSGKTLAA 64 (876)
T ss_pred cCHHHHHHHHH-c-----------------------cCCCCHH---HHH------HHHHHHcCCCEEEECCCCCcHHHHH
Confidence 56777777665 6 8889999 999 9999999999999999999999999
Q ss_pred HHHHHHhhhcc------CCCeEEEEeeccHHHHHHHHHHHHH-------hh----ccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 167 VLATLQQLETT------DSNVYVLVMCHTRELAFQISKEYER-------FS----KYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 167 ~l~~l~~l~~~------~~~~~~lil~Pt~~L~~q~~~~~~~-------~~----~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
.+|+++.+... ..+.++||++|+++|+.|+++.+.. +. ...+++++...+|+.+.......+.
T Consensus 65 ~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~ 144 (876)
T PRK13767 65 FLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLK 144 (876)
T ss_pred HHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHh
Confidence 99999887532 2457899999999999999876552 22 2333678899999988666655555
Q ss_pred cCCCcEEEEcHHHHHHHHHCCCC--cCCCeeEEEecchhHHHhhhhhHHHHH----HHHHhCCCCCeEEEEeccCCccHH
Q psy1548 230 THNPQIVVGTPGRILALVRNKKL--NLSLLKHFILDECDKMLEQLEMRRDVQ----EIFRSSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~~~--~~~~i~~lViDEah~l~~~~~~~~~~~----~i~~~l~~~~q~i~~SAT~~~~~~ 303 (448)
+ +++|+|+||+++..++....+ .++++++||+||+|.+.+. .+...+. .+....+...|++++|||+++. .
T Consensus 145 ~-~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~~-~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~-~ 221 (876)
T PRK13767 145 K-PPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAEN-KRGVHLSLSLERLEELAGGEFVRIGLSATIEPL-E 221 (876)
T ss_pred C-CCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhccC-ccHHHHHHHHHHHHHhcCCCCeEEEEecccCCH-H
Confidence 4 489999999999888866543 4789999999999999865 4444433 3444444678999999999763 3
Q ss_pred HHHHHhcC-------CCeEEEEcCcccccccceeEE-----EEEcCcch----HHHHHHHHHhhCCCCeEEEEECccHHH
Q psy1548 304 PVCKKFMH-------DPMEVYVDDEAKLTLHGLQQH-----YVKLKENE----KNKKLFELLDVLEFNQVVIFVKSVTRC 367 (448)
Q Consensus 304 ~~~~~~l~-------~~~~i~~~~~~~~~~~~i~~~-----~~~~~~~~----k~~~L~~ll~~~~~~~~IIF~~s~~~a 367 (448)
++..++.. .+..+. ... ......+... ........ ....+..+++. ++++||||||+..|
T Consensus 222 ~va~~L~~~~~~~~~r~~~iv-~~~-~~k~~~i~v~~p~~~l~~~~~~~~~~~l~~~L~~~i~~--~~~~LVF~nTr~~a 297 (876)
T PRK13767 222 EVAKFLVGYEDDGEPRDCEIV-DAR-FVKPFDIKVISPVDDLIHTPAEEISEALYETLHELIKE--HRTTLIFTNTRSGA 297 (876)
T ss_pred HHHHHhcCccccCCCCceEEE-ccC-CCccceEEEeccCccccccccchhHHHHHHHHHHHHhc--CCCEEEEeCCHHHH
Confidence 44443322 122221 111 0001111110 00111111 22334444433 56899999999999
Q ss_pred HHHHHHHHhC------CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccc
Q psy1548 368 IALSTLLSEQ------NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 368 ~~l~~~L~~~------g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~ 441 (448)
+.++..|++. +..+.++||+|++++|..+++.|++|+ +.+.+||+.-+.++ +|.+.--+-....|.+...
T Consensus 298 e~la~~L~~~~~~~~~~~~i~~hHg~ls~~~R~~ve~~fk~G~--i~vLVaTs~Le~GI--Dip~Vd~VI~~~~P~sv~~ 373 (876)
T PRK13767 298 ERVLYNLRKRFPEEYDEDNIGAHHSSLSREVRLEVEEKLKRGE--LKVVVSSTSLELGI--DIGYIDLVVLLGSPKSVSR 373 (876)
T ss_pred HHHHHHHHHhchhhccccceeeeeCCCCHHHHHHHHHHHHcCC--CeEEEECChHHhcC--CCCCCcEEEEeCCCCCHHH
Confidence 9999999873 467999999999999999999999998 57888887644443 3433333444567888888
Q ss_pred cccccCC
Q psy1548 442 STYIEGR 448 (448)
Q Consensus 442 ~~~~~~~ 448 (448)
+.++.||
T Consensus 374 ylQRiGR 380 (876)
T PRK13767 374 LLQRIGR 380 (876)
T ss_pred HHHhccc
Confidence 8888887
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=6.3e-35 Score=314.20 Aligned_cols=318 Identities=19% Similarity=0.237 Sum_probs=229.0
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeeccCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQAKSG 159 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~apTG 159 (448)
.|+++++++.+++++.+.| +..|+++ |.+ +++. +..|+|+++++|||
T Consensus 2 ~~~~l~lp~~~~~~l~~~g-----------------------~~~l~p~---Q~~------ai~~~~~~g~nvlv~APTG 49 (737)
T PRK02362 2 KIAELPLPEGVIEFYEAEG-----------------------IEELYPP---QAE------AVEAGLLDGKNLLAAIPTA 49 (737)
T ss_pred ChhhcCCCHHHHHHHHhCC-----------------------CCcCCHH---HHH------HHHHHHhCCCcEEEECCCc
Confidence 5889999999999999999 9999999 999 9987 77899999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
||||++|.+|++..+.. +.+++|++|+++|+.|+++.++.+.. + ++++..++|+...... .+ +.++|+|+|
T Consensus 50 SGKTlia~lail~~l~~---~~kal~i~P~raLa~q~~~~~~~~~~-~-g~~v~~~tGd~~~~~~--~l--~~~~IiV~T 120 (737)
T PRK02362 50 SGKTLIAELAMLKAIAR---GGKALYIVPLRALASEKFEEFERFEE-L-GVRVGISTGDYDSRDE--WL--GDNDIIVAT 120 (737)
T ss_pred chHHHHHHHHHHHHHhc---CCcEEEEeChHHHHHHHHHHHHHhhc-C-CCEEEEEeCCcCcccc--cc--CCCCEEEEC
Confidence 99999999999998853 45899999999999999999998754 3 7899999998754332 12 237999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh---CCCCCeEEEEeccCCccHHHHHHHhcCC----
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS---SPHTKQVMMFSATLSKEIRPVCKKFMHD---- 312 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~---l~~~~q~i~~SAT~~~~~~~~~~~~l~~---- 312 (448)
|+++..++++...++++++++|+||+|.+.+. +++..++.++.. .++..|++++|||+++. .++..++...
T Consensus 121 pek~~~llr~~~~~l~~v~lvViDE~H~l~d~-~rg~~le~il~rl~~~~~~~qii~lSATl~n~-~~la~wl~~~~~~~ 198 (737)
T PRK02362 121 SEKVDSLLRNGAPWLDDITCVVVDEVHLIDSA-NRGPTLEVTLAKLRRLNPDLQVVALSATIGNA-DELADWLDAELVDS 198 (737)
T ss_pred HHHHHHHHhcChhhhhhcCEEEEECccccCCC-cchHHHHHHHHHHHhcCCCCcEEEEcccCCCH-HHHHHHhCCCcccC
Confidence 99999999877677899999999999999876 777777766544 45678999999999763 4444443221
Q ss_pred ---CeEEE--EcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCC--------
Q psy1548 313 ---PMEVY--VDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN-------- 378 (448)
Q Consensus 313 ---~~~i~--~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g-------- 378 (448)
|+.+. +.......... .+..+.... ......+.+.+. .++++||||+|++.|+.++..|.+..
T Consensus 199 ~~rpv~l~~~v~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~ 275 (737)
T PRK02362 199 EWRPIDLREGVFYGGAIHFDD-SQREVEVPSKDDTLNLVLDTLE--EGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAE 275 (737)
T ss_pred CCCCCCCeeeEecCCeecccc-ccccCCCccchHHHHHHHHHHH--cCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHH
Confidence 11111 00000000000 011111111 223333444333 46799999999999999998886431
Q ss_pred ----------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHH---
Q psy1548 379 ----------------------------FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDR--- 427 (448)
Q Consensus 379 ----------------------------~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~--- 427 (448)
..+.++||+|++++|..+++.|++|. +.|+++|+.-..++ ++...
T Consensus 276 ~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHagl~~~eR~~ve~~Fr~G~--i~VLvaT~tla~Gv--nlPa~~VV 351 (737)
T PRK02362 276 RAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAGLSREHRELVEDAFRDRL--IKVISSTPTLAAGL--NLPARRVI 351 (737)
T ss_pred HHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCCCCHHHHHHHHHHHHcCC--CeEEEechhhhhhc--CCCceEEE
Confidence 35889999999999999999999988 67777777533332 11111
Q ss_pred ------hcCCCCCCCccccccccccCC
Q psy1548 428 ------FDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 428 ------~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|+-.....|-....+.+|.||
T Consensus 352 I~~~~~yd~~~g~~~~s~~~y~Qm~GR 378 (737)
T PRK02362 352 IRDYRRYDGGAGMQPIPVLEYHQMAGR 378 (737)
T ss_pred EecceeecCCCCceeCCHHHHHHHhhc
Confidence 111111235555567788887
No 42
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=100.00 E-value=1.5e-34 Score=303.63 Aligned_cols=298 Identities=17% Similarity=0.229 Sum_probs=221.5
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCc-ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEE-eeccHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLV-MCHTRELAFQISKEY 200 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~-~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~li-l~Pt~~L~~q~~~~~ 200 (448)
|. |+++ |.+ ++|.++.|+ ++++++|||||||.++.++++.. ......++.|+ ++|||+|+.|+++.+
T Consensus 14 ~~-Ptpi---Q~~------~i~~il~G~~~v~~~apTGSGKTaa~aafll~~-~~~~~~~~rLv~~vPtReLa~Qi~~~~ 82 (844)
T TIGR02621 14 YS-PFPW---QLS------LAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV-EIGAKVPRRLVYVVNRRTVVDQVTEEA 82 (844)
T ss_pred CC-CCHH---HHH------HHHHHHcCCCcceEecCCCCcccHHHHHhhccc-cccccccceEEEeCchHHHHHHHHHHH
Confidence 76 9998 999 999999998 68888999999999776555532 23333445555 679999999999999
Q ss_pred HHhhccCC----------------------CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC------
Q psy1548 201 ERFSKYMS----------------------NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL------ 252 (448)
Q Consensus 201 ~~~~~~~~----------------------~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~------ 252 (448)
+++++.++ ++++..++||.+...+...+..+ ++|+|+|++. +.++.+
T Consensus 83 ~~~~k~l~~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~-p~IIVgT~D~----i~sr~L~~gYg~ 157 (844)
T TIGR02621 83 EKIGERLPDVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHR-PAVIVGTVDM----IGSRLLFSGYGC 157 (844)
T ss_pred HHHHHHhcccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCC-CcEEEECHHH----HcCCcccccccc
Confidence 99998652 38899999999999998888775 8999999654 444443
Q ss_pred ----------cCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC--CCC---CeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 253 ----------NLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS--PHT---KQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 253 ----------~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l--~~~---~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
.+++++++|+|||| ++. +|...+..|++.+ ++. .|+++||||++.++.++...++.++..+.
T Consensus 158 ~~~~~pi~ag~L~~v~~LVLDEAD--Ld~-gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~l~~~~~~~p~~i~ 234 (844)
T TIGR02621 158 GFKSRPLHAGFLGQDALIVHDEAH--LEP-AFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPDRTTLLSAEDYKHP 234 (844)
T ss_pred ccccccchhhhhccceEEEEehhh--hcc-ccHHHHHHHHHhcccCcccccceEEEEecCCCccHHHHHHHHccCCceee
Confidence 26889999999999 565 8999999999965 432 69999999999998888888888887666
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHH---hhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELL---DVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll---~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
+... .....++.++ +.++...|...+...+ ....++++||||||++.|+.+++.|++.++ ..+||+|++.+|.
T Consensus 235 V~~~-~l~a~ki~q~-v~v~~e~Kl~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~g~--~lLHG~m~q~dR~ 310 (844)
T TIGR02621 235 VLKK-RLAAKKIVKL-VPPSDEKFLSTMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKEKF--ELLTGTLRGAERD 310 (844)
T ss_pred cccc-cccccceEEE-EecChHHHHHHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhcCC--eEeeCCCCHHHHh
Confidence 5443 4445566664 3444444544433322 123457899999999999999999999887 8999999999999
Q ss_pred -----HHHHHHhc----CC-----CceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 395 -----KKYQEFKD----FH-----KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 395 -----~~l~~F~~----g~-----~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++++|++ |+ .|..|+++|+--++++ +|.. +.-+.++. .++.+.++.||
T Consensus 311 ~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGL--DId~--d~VI~d~a-P~esyIQRiGR 373 (844)
T TIGR02621 311 DLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGV--NISA--DHLVCDLA-PFESMQQRFGR 373 (844)
T ss_pred hHHHHHHHHHHhccccccccccccccceEEeccchhhhcc--cCCc--ceEEECCC-CHHHHHHHhcc
Confidence 88999987 43 3456777776433333 3321 22222221 14566777776
No 43
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=100.00 E-value=6.1e-34 Score=297.57 Aligned_cols=285 Identities=20% Similarity=0.244 Sum_probs=225.1
Q ss_pred CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHH
Q psy1548 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
+++.+.+|+... |..|++. |.+ +||.+.+|+|+|+.||||||||+++
T Consensus 8 l~~~v~~~~~~~------------------------~~~~t~~---Q~~------a~~~i~~G~nvLiiAPTGsGKTeAA 54 (814)
T COG1201 8 LDPRVREWFKRK------------------------FTSLTPP---QRY------AIPEIHSGENVLIIAPTGSGKTEAA 54 (814)
T ss_pred cCHHHHHHHHHh------------------------cCCCCHH---HHH------HHHHHhCCCceEEEcCCCCChHHHH
Confidence 678888888775 7899999 999 9999999999999999999999999
Q ss_pred HHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHH
Q psy1548 167 VLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPG 241 (448)
Q Consensus 167 ~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~ 241 (448)
.+|+++.+... ..+..+|||+|.++|.+++.+.++.+...+ ++.+.+.+|+++..+..... ..+|||+|+||+
T Consensus 55 fLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~~-G~~v~vRhGDT~~~er~r~~-~~PPdILiTTPE 132 (814)
T COG1201 55 FLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLREL-GIEVAVRHGDTPQSEKQKML-KNPPHILITTPE 132 (814)
T ss_pred HHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHHc-CCccceecCCCChHHhhhcc-CCCCcEEEeChh
Confidence 99999988665 346899999999999999999999999998 99999999999866554444 447999999999
Q ss_pred HHHHHHHCCCC--cCCCeeEEEecchhHHHhhhhhHHHHH----HHHHhCCCCCeEEEEeccCCccHHHHHHHhcCC--C
Q psy1548 242 RILALVRNKKL--NLSLLKHFILDECDKMLEQLEMRRDVQ----EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD--P 313 (448)
Q Consensus 242 ~l~~~l~~~~~--~~~~i~~lViDEah~l~~~~~~~~~~~----~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~--~ 313 (448)
.|.-++....+ .+.+++++|+||+|.+.+. ..+.++. .+....+ +.|.|++|||..+ ..+..+++... +
T Consensus 133 sL~lll~~~~~r~~l~~vr~VIVDEiHel~~s-KRG~~Lsl~LeRL~~l~~-~~qRIGLSATV~~-~~~varfL~g~~~~ 209 (814)
T COG1201 133 SLAILLNSPKFRELLRDVRYVIVDEIHALAES-KRGVQLALSLERLRELAG-DFQRIGLSATVGP-PEEVAKFLVGFGDP 209 (814)
T ss_pred HHHHHhcCHHHHHHhcCCcEEEeehhhhhhcc-ccchhhhhhHHHHHhhCc-ccEEEeehhccCC-HHHHHHHhcCCCCc
Confidence 99988876433 4799999999999999876 5444444 3333334 8899999999974 45666665554 3
Q ss_pred eEEEEcCcccccccceeEEEEEcCc---------chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCC-CcEEE
Q psy1548 314 MEVYVDDEAKLTLHGLQQHYVKLKE---------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN-FPAVS 383 (448)
Q Consensus 314 ~~i~~~~~~~~~~~~i~~~~~~~~~---------~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g-~~~~~ 383 (448)
..|...... ............ ..-...+.++++.+. .+|||+||+..|+.++..|++.+ .++..
T Consensus 210 ~~Iv~~~~~----k~~~i~v~~p~~~~~~~~~~~~~~~~~i~~~v~~~~--ttLIF~NTR~~aE~l~~~L~~~~~~~i~~ 283 (814)
T COG1201 210 CEIVDVSAA----KKLEIKVISPVEDLIYDEELWAALYERIAELVKKHR--TTLIFTNTRSGAERLAFRLKKLGPDIIEV 283 (814)
T ss_pred eEEEEcccC----CcceEEEEecCCccccccchhHHHHHHHHHHHhhcC--cEEEEEeChHHHHHHHHHHHHhcCCceee
Confidence 444332221 122222222221 124556666776654 89999999999999999999986 89999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEEecChhh
Q psy1548 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDEND 417 (448)
Q Consensus 384 lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d 417 (448)
+||.++.+.|..+.++|++|+ +...+||+.-+
T Consensus 284 HHgSlSre~R~~vE~~lk~G~--lravV~TSSLE 315 (814)
T COG1201 284 HHGSLSRELRLEVEERLKEGE--LKAVVATSSLE 315 (814)
T ss_pred ecccccHHHHHHHHHHHhcCC--ceEEEEccchh
Confidence 999999999999999999998 67777777533
No 44
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=4.7e-34 Score=300.38 Aligned_cols=296 Identities=16% Similarity=0.153 Sum_probs=221.4
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|..|+++ |++ +++.++.|+|+++.+|||+|||++|++|++.. ...+||++|+++|+.|+.+.++.
T Consensus 23 ~~~~r~~---Q~~------ai~~il~g~dvlv~apTGsGKTl~y~lpal~~------~g~tlVisPl~sL~~dqv~~l~~ 87 (607)
T PRK11057 23 YQQFRPG---QQE------IIDAVLSGRDCLVVMPTGGGKSLCYQIPALVL------DGLTLVVSPLISLMKDQVDQLLA 87 (607)
T ss_pred CCCCCHH---HHH------HHHHHHcCCCEEEEcCCCchHHHHHHHHHHHc------CCCEEEEecHHHHHHHHHHHHHH
Confidence 8888888 999 99999999999999999999999999999864 23799999999999998888876
Q ss_pred hhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-hhhHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-LEMRRDV 278 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~~~ 278 (448)
+ ++.+..+.++....... ..+..+..+++++||+++........+...+++++||||||++.+| .+|++.+
T Consensus 88 ~-----gi~~~~~~s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y 162 (607)
T PRK11057 88 N-----GVAAACLNSTQTREQQLEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEY 162 (607)
T ss_pred c-----CCcEEEEcCCCCHHHHHHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHH
Confidence 4 56777777766544432 2344566899999999986422212233457899999999999987 2477776
Q ss_pred HHHH--HhCCCCCeEEEEeccCCccHHHHHHHhc--CCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCC
Q psy1548 279 QEIF--RSSPHTKQVMMFSATLSKEIRPVCKKFM--HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEF 354 (448)
Q Consensus 279 ~~i~--~~l~~~~q~i~~SAT~~~~~~~~~~~~l--~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~ 354 (448)
..+. ....++.+++++|||+++.....+...+ .+|...... . ..+++. +..+....+...+..++....+
T Consensus 163 ~~L~~l~~~~p~~~~v~lTAT~~~~~~~di~~~l~l~~~~~~~~~-~---~r~nl~--~~v~~~~~~~~~l~~~l~~~~~ 236 (607)
T PRK11057 163 AALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDPLIQISS-F---DRPNIR--YTLVEKFKPLDQLMRYVQEQRG 236 (607)
T ss_pred HHHHHHHHhCCCCcEEEEecCCChhHHHHHHHHhCCCCeEEEECC-C---CCCcce--eeeeeccchHHHHHHHHHhcCC
Confidence 5542 2223578899999999988765544433 455443321 1 123332 2233344456667777777778
Q ss_pred CeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCC
Q psy1548 355 NQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISE 434 (448)
Q Consensus 355 ~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~ 434 (448)
+++||||+|+++|+.++..|++.|+.+..+||+|++++|.++++.|++|+ +.|.++|+...+++ ++.+.--+-..+
T Consensus 237 ~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g~--~~VLVaT~a~~~GI--Dip~V~~VI~~d 312 (607)
T PRK11057 237 KSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRDD--LQIVVATVAFGMGI--NKPNVRFVVHFD 312 (607)
T ss_pred CCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCCC--CCEEEEechhhccC--CCCCcCEEEEeC
Confidence 89999999999999999999999999999999999999999999999987 56777777533332 333333344577
Q ss_pred CCccccccccccCC
Q psy1548 435 LPDEIDLSTYIEGR 448 (448)
Q Consensus 435 ~p~~~~~~~~~~~~ 448 (448)
+|.+++.+.++.||
T Consensus 313 ~P~s~~~y~Qr~GR 326 (607)
T PRK11057 313 IPRNIESYYQETGR 326 (607)
T ss_pred CCCCHHHHHHHhhh
Confidence 78888888898887
No 45
>PRK00254 ski2-like helicase; Provisional
Probab=100.00 E-value=1.3e-33 Score=303.33 Aligned_cols=287 Identities=14% Similarity=0.191 Sum_probs=220.6
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeeccCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQAKSG 159 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~apTG 159 (448)
.|+++++++.+.+.+.+.| |..|+++ |.+ +++. ++.|+|+++++|||
T Consensus 2 ~~~~l~l~~~~~~~l~~~g-----------------------~~~l~~~---Q~~------ai~~~~~~g~nvlv~apTG 49 (720)
T PRK00254 2 KVDELRVDERIKRVLKERG-----------------------IEELYPP---QAE------ALKSGVLEGKNLVLAIPTA 49 (720)
T ss_pred cHHHcCCCHHHHHHHHhCC-----------------------CCCCCHH---HHH------HHHHHHhCCCcEEEECCCC
Confidence 5788999999999999999 9999999 999 9986 78899999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
||||++|.+|++..+... +.++||++|+++|+.|+++.+..+.. + ++++..++|+.+.... .+ +.++|+|+|
T Consensus 50 sGKT~~~~l~il~~l~~~--~~~~l~l~P~~aLa~q~~~~~~~~~~-~-g~~v~~~~Gd~~~~~~--~~--~~~~IiV~T 121 (720)
T PRK00254 50 SGKTLVAEIVMVNKLLRE--GGKAVYLVPLKALAEEKYREFKDWEK-L-GLRVAMTTGDYDSTDE--WL--GKYDIIIAT 121 (720)
T ss_pred cHHHHHHHHHHHHHHHhc--CCeEEEEeChHHHHHHHHHHHHHHhh-c-CCEEEEEeCCCCCchh--hh--ccCCEEEEc
Confidence 999999999999887543 45899999999999999999988753 4 7899999998764332 22 248999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++..+++....++++++++|+||+|.+.+. ++...+..++..++...|++++|||+++. .++..+ +..+.... .
T Consensus 122 pe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~-~rg~~le~il~~l~~~~qiI~lSATl~n~-~~la~w-l~~~~~~~-~ 197 (720)
T PRK00254 122 AEKFDSLLRHGSSWIKDVKLVVADEIHLIGSY-DRGATLEMILTHMLGRAQILGLSATVGNA-EELAEW-LNAELVVS-D 197 (720)
T ss_pred HHHHHHHHhCCchhhhcCCEEEEcCcCccCCc-cchHHHHHHHHhcCcCCcEEEEEccCCCH-HHHHHH-hCCccccC-C
Confidence 99999999877777899999999999999887 88899999999998899999999999863 566554 33222111 0
Q ss_pred Ccccccc-cc-eeEEEEEcCcc-------hHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC-------------
Q psy1548 320 DEAKLTL-HG-LQQHYVKLKEN-------EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ------------- 377 (448)
Q Consensus 320 ~~~~~~~-~~-i~~~~~~~~~~-------~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~------------- 377 (448)
.. .... .. ..+.+...... .....+.+.+. .++++||||+|++.|+.++..|.+.
T Consensus 198 ~r-pv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~--~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~ 274 (720)
T PRK00254 198 WR-PVKLRKGVFYQGFLFWEDGKIERFPNSWESLVYDAVK--KGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRAL 274 (720)
T ss_pred CC-CCcceeeEecCCeeeccCcchhcchHHHHHHHHHHHH--hCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHH
Confidence 00 0000 00 11111111111 11233444444 3678999999999999888766421
Q ss_pred --------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 378 --------------------NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 378 --------------------g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
...+.++||+|++++|..+++.|++|. +.|.++|+.-
T Consensus 275 ~~~~~~~~~~~~~~~L~~~l~~gv~~hHagl~~~eR~~ve~~F~~G~--i~VLvaT~tL 331 (720)
T PRK00254 275 KELADSLEENPTNEKLKKALRGGVAFHHAGLGRTERVLIEDAFREGL--IKVITATPTL 331 (720)
T ss_pred HHHHHHHhcCCCcHHHHHHHhhCEEEeCCCCCHHHHHHHHHHHHCCC--CeEEEeCcHH
Confidence 235899999999999999999999987 6777777753
No 46
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=2.5e-34 Score=302.95 Aligned_cols=297 Identities=17% Similarity=0.217 Sum_probs=228.6
Q ss_pred eeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 121 ~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
|+|..++++ |.+ +++.++.|+|+++++|||+|||++|++|++.. +..++|++|+++|+.|+.+.+
T Consensus 9 fg~~~fr~~---Q~~------~i~~il~g~dvlv~~PTG~GKTl~y~lpal~~------~g~~lVisPl~sL~~dq~~~l 73 (591)
T TIGR01389 9 FGYDDFRPG---QEE------IISHVLDGRDVLVVMPTGGGKSLCYQVPALLL------KGLTVVISPLISLMKDQVDQL 73 (591)
T ss_pred cCCCCCCHH---HHH------HHHHHHcCCCEEEEcCCCccHhHHHHHHHHHc------CCcEEEEcCCHHHHHHHHHHH
Confidence 448888888 999 99999999999999999999999999999853 236899999999999988888
Q ss_pred HHhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-hhhHH
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-LEMRR 276 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~ 276 (448)
+.+ ++.+..+.++.+..... ..+..+..+|+++||+++........+...++++|||||||++.+| .+|++
T Consensus 74 ~~~-----gi~~~~~~s~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp 148 (591)
T TIGR01389 74 RAA-----GVAAAYLNSTLSAKEQQDIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRP 148 (591)
T ss_pred HHc-----CCcEEEEeCCCCHHHHHHHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHH
Confidence 774 67777888877655433 2345566899999999986543333344678899999999999887 34888
Q ss_pred HHHHHHH---hCCCCCeEEEEeccCCccHHHHHHHhcC--CCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhh
Q psy1548 277 DVQEIFR---SSPHTKQVMMFSATLSKEIRPVCKKFMH--DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV 351 (448)
Q Consensus 277 ~~~~i~~---~l~~~~q~i~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 351 (448)
.+..+.. .++ ..+++++|||++..+...+...+. ++..+.. . ....++. +.......+...+.+++..
T Consensus 149 ~y~~l~~l~~~~~-~~~vi~lTAT~~~~~~~~i~~~l~~~~~~~~~~-~---~~r~nl~--~~v~~~~~~~~~l~~~l~~ 221 (591)
T TIGR01389 149 EYQRLGSLAERFP-QVPRIALTATADAETRQDIRELLRLADANEFIT-S---FDRPNLR--FSVVKKNNKQKFLLDYLKK 221 (591)
T ss_pred HHHHHHHHHHhCC-CCCEEEEEeCCCHHHHHHHHHHcCCCCCCeEec-C---CCCCCcE--EEEEeCCCHHHHHHHHHHh
Confidence 7776643 343 456999999999988776666654 3333321 1 1223332 2233345567778888887
Q ss_pred CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 352 LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 352 ~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
..+.++||||+|++.|+.+++.|...|+++..+||+|++++|..+++.|++|+ +.|.++|....+++ ++.+.--+-
T Consensus 222 ~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g~--~~vlVaT~a~~~GI--D~p~v~~VI 297 (591)
T TIGR01389 222 HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYDD--VKVMVATNAFGMGI--DKPNVRFVI 297 (591)
T ss_pred cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcCC--CcEEEEechhhccC--cCCCCCEEE
Confidence 77789999999999999999999999999999999999999999999999987 67888887643333 333333455
Q ss_pred CCCCCccccccccccCC
Q psy1548 432 ISELPDEIDLSTYIEGR 448 (448)
Q Consensus 432 ~~~~p~~~~~~~~~~~~ 448 (448)
...+|.+++.+.++.||
T Consensus 298 ~~~~p~s~~~y~Q~~GR 314 (591)
T TIGR01389 298 HYDMPGNLESYYQEAGR 314 (591)
T ss_pred EcCCCCCHHHHhhhhcc
Confidence 67789999999999988
No 47
>PRK09401 reverse gyrase; Reviewed
Probab=100.00 E-value=6.1e-32 Score=298.00 Aligned_cols=259 Identities=20% Similarity=0.262 Sum_probs=202.9
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|+++ |+. ++|.++.|+|++++||||+|||+ |.++++..+.. .+.+++||+||++|+.|+.+.++.++
T Consensus 80 ~pt~i---Q~~------~i~~il~g~dv~i~ApTGsGKT~-f~l~~~~~l~~--~g~~alIL~PTreLa~Qi~~~l~~l~ 147 (1176)
T PRK09401 80 KPWSL---QRT------WAKRLLLGESFAIIAPTGVGKTT-FGLVMSLYLAK--KGKKSYIIFPTRLLVEQVVEKLEKFG 147 (1176)
T ss_pred CCcHH---HHH------HHHHHHCCCcEEEEcCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeccHHHHHHHHHHHHHHh
Confidence 78888 999 99999999999999999999996 55555554433 36689999999999999999999999
Q ss_pred ccCCCceEEEEEcCccc-----HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh--------
Q psy1548 205 KYMSNIKVGVFFGGLPI-----QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-------- 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~-----~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-------- 271 (448)
... ++.+..++|+... ......+..+.++|+|+||++|.+.+. .+...+++++|+||||+|+++
T Consensus 148 ~~~-~~~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 148 EKV-GCGVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred hhc-CceEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHH
Confidence 877 7888777776542 223344555669999999999998876 455667999999999999863
Q ss_pred --hhhH-HHHHHHHHhCCC------------------------CCeEEEEeccCCcc-HHHHHHHhcCCCeEEEEcCccc
Q psy1548 272 --LEMR-RDVQEIFRSSPH------------------------TKQVMMFSATLSKE-IRPVCKKFMHDPMEVYVDDEAK 323 (448)
Q Consensus 272 --~~~~-~~~~~i~~~l~~------------------------~~q~i~~SAT~~~~-~~~~~~~~l~~~~~i~~~~~~~ 323 (448)
.||. .++..++..++. ..|++++|||+++. +.. .++.++..+.+... .
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~---~l~~~ll~~~v~~~-~ 300 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRV---KLFRELLGFEVGSP-V 300 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHH---HHhhccceEEecCc-c
Confidence 2674 677777777654 67999999999875 332 22344444555444 3
Q ss_pred ccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHH---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Q psy1548 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR---CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~---a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F 400 (448)
....++.+.|+.++ +|...|..+++... .++||||+++.. |+.+++.|++.|+++..+||+| .+.+++|
T Consensus 301 ~~~rnI~~~yi~~~--~k~~~L~~ll~~l~-~~~LIFv~t~~~~~~ae~l~~~L~~~gi~v~~~hg~l-----~~~l~~F 372 (1176)
T PRK09401 301 FYLRNIVDSYIVDE--DSVEKLVELVKRLG-DGGLIFVPSDKGKEYAEELAEYLEDLGINAELAISGF-----ERKFEKF 372 (1176)
T ss_pred cccCCceEEEEEcc--cHHHHHHHHHHhcC-CCEEEEEecccChHHHHHHHHHHHHCCCcEEEEeCcH-----HHHHHHH
Confidence 45678888888766 67778888887664 579999999887 9999999999999999999999 2346999
Q ss_pred hcCCCceEEE
Q psy1548 401 KDFHKGLAIT 410 (448)
Q Consensus 401 ~~g~~g~~I~ 410 (448)
++|+..+.|.
T Consensus 373 ~~G~~~VLVa 382 (1176)
T PRK09401 373 EEGEVDVLVG 382 (1176)
T ss_pred HCCCCCEEEE
Confidence 9999544444
No 48
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=100.00 E-value=2.1e-31 Score=294.72 Aligned_cols=285 Identities=19% Similarity=0.216 Sum_probs=205.2
Q ss_pred eeccCCChhHHHHHHHHHHhhhcc----------CCCeEEEEeeccHHHHHHHHHHHHHhh-----------ccCCCceE
Q psy1548 154 CQAKSGMGKTAVFVLATLQQLETT----------DSNVYVLVMCHTRELAFQISKEYERFS-----------KYMSNIKV 212 (448)
Q Consensus 154 i~apTGsGKT~~~~l~~l~~l~~~----------~~~~~~lil~Pt~~L~~q~~~~~~~~~-----------~~~~~~~v 212 (448)
|++|||||||++|.+|+++.+... ..+.++|||+|+++|+.|+.+.++... ....++++
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999999999988543 235799999999999999999887521 11127899
Q ss_pred EEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhh----hHHHHHHHHHhCCC
Q psy1548 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLE----MRRDVQEIFRSSPH 287 (448)
Q Consensus 213 ~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~----~~~~~~~i~~~l~~ 287 (448)
...+|+++..++...+.+ +++|+|+||++|..++.++ ...++++++|||||+|.+.+. . +...+..+...++.
T Consensus 81 ~vrtGDt~~~eR~rll~~-ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~-kRG~~Lel~LeRL~~l~~~ 158 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRN-PPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGS-KRGAHLALSLERLDALLHT 158 (1490)
T ss_pred EEEECCCCHHHHHHHhcC-CCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhccc-ccccHHHHHHHHHHHhCCC
Confidence 999999987766555554 5899999999999987654 346899999999999999864 3 34455666666777
Q ss_pred CCeEEEEeccCCccHHHHHHHhcC-CCeEEEEcCcccccccceeEEEEEcCcchH--------------------H-HHH
Q psy1548 288 TKQVMMFSATLSKEIRPVCKKFMH-DPMEVYVDDEAKLTLHGLQQHYVKLKENEK--------------------N-KKL 345 (448)
Q Consensus 288 ~~q~i~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k--------------------~-~~L 345 (448)
+.|+|++|||+++ .+++++++.. .|..+..... .....+... +......+ . ...
T Consensus 159 ~~QrIgLSATI~n-~eevA~~L~g~~pv~Iv~~~~--~r~~~l~v~-vp~~d~~~~~~~~~~~~~~~~~~r~~~i~~~v~ 234 (1490)
T PRK09751 159 SAQRIGLSATVRS-ASDVAAFLGGDRPVTVVNPPA--MRHPQIRIV-VPVANMDDVSSVASGTGEDSHAGREGSIWPYIE 234 (1490)
T ss_pred CCeEEEEEeeCCC-HHHHHHHhcCCCCEEEECCCC--CcccceEEE-EecCchhhccccccccccccchhhhhhhhHHHH
Confidence 8999999999987 4566655443 3555533222 122223221 22111100 0 011
Q ss_pred HHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCC---------------------------------CcEEEEeCCCCHH
Q psy1548 346 FELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQN---------------------------------FPAVSIHRGMTQE 391 (448)
Q Consensus 346 ~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g---------------------------------~~~~~lh~~~~~~ 391 (448)
..++.. ...+++||||||+..|+.++..|++.. +.+..+||+|+++
T Consensus 235 ~~il~~i~~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGsLSke 314 (1490)
T PRK09751 235 TGILDEVLRHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGSVSKE 314 (1490)
T ss_pred HHHHHHHhcCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccccccceeeeeccccCCHH
Confidence 122222 235789999999999999999997641 1257899999999
Q ss_pred HHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 392 ERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 392 eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+|..+++.|++|+ +.+.+||+.-+.++ +|...-.+...+.|.++..+.+|.||
T Consensus 315 eR~~IE~~fK~G~--LrvLVATssLELGI--DIg~VDlVIq~gsP~sVas~LQRiGR 367 (1490)
T PRK09751 315 QRAITEQALKSGE--LRCVVATSSLELGI--DMGAVDLVIQVATPLSVASGLQRIGR 367 (1490)
T ss_pred HHHHHHHHHHhCC--ceEEEeCcHHHccC--CcccCCEEEEeCCCCCHHHHHHHhCC
Confidence 9999999999998 57888888654444 45555555556778888888999988
No 49
>PRK01172 ski2-like helicase; Provisional
Probab=100.00 E-value=1.6e-31 Score=285.76 Aligned_cols=283 Identities=15% Similarity=0.205 Sum_probs=210.0
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
.|+++++++++++++.+.+ |. ++++ |.+ +++.+..|+|+++++||||
T Consensus 2 ~~~~~~l~~~~~~~~~~~~-----------------------~~-l~~~---Q~~------ai~~l~~~~nvlv~apTGS 48 (674)
T PRK01172 2 KISDLGYDDEFLNLFTGND-----------------------FE-LYDH---QRM------AIEQLRKGENVIVSVPTAA 48 (674)
T ss_pred cHhhcCCCHHHHHHHhhCC-----------------------CC-CCHH---HHH------HHHHHhcCCcEEEECCCCc
Confidence 5788999999999999888 76 6777 999 9999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcH
Q psy1548 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP 240 (448)
Q Consensus 161 GKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp 240 (448)
|||+++.++++..+.. +.+++|++|+++|+.|+++.++++.. . +.++...+|+...... .+ . .++|+|+||
T Consensus 49 GKTl~a~lail~~l~~---~~k~v~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~--~~-~-~~dIiv~Tp 119 (674)
T PRK01172 49 GKTLIAYSAIYETFLA---GLKSIYIVPLRSLAMEKYEELSRLRS-L-GMRVKISIGDYDDPPD--FI-K-RYDVVILTS 119 (674)
T ss_pred hHHHHHHHHHHHHHHh---CCcEEEEechHHHHHHHHHHHHHHhh-c-CCeEEEEeCCCCCChh--hh-c-cCCEEEECH
Confidence 9999999999987754 34899999999999999999988753 3 7888888888654322 12 2 379999999
Q ss_pred HHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH---hCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR---SSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 241 ~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~---~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+++..++.+....+.+++++|+||+|.+.+. ++...++.++. ..++..|++++|||+++. .++.+++..... .
T Consensus 120 ek~~~l~~~~~~~l~~v~lvViDEaH~l~d~-~rg~~le~ll~~~~~~~~~~riI~lSATl~n~-~~la~wl~~~~~--~ 195 (674)
T PRK01172 120 EKADSLIHHDPYIINDVGLIVADEIHIIGDE-DRGPTLETVLSSARYVNPDARILALSATVSNA-NELAQWLNASLI--K 195 (674)
T ss_pred HHHHHHHhCChhHHhhcCEEEEecchhccCC-CccHHHHHHHHHHHhcCcCCcEEEEeCccCCH-HHHHHHhCCCcc--C
Confidence 9999998887777899999999999998876 66666666544 456788999999999763 555554322211 0
Q ss_pred EcCcccccccceeEEEE-----EcCcch-HHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHHhC-----C------
Q psy1548 318 VDDEAKLTLHGLQQHYV-----KLKENE-KNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLSEQ-----N------ 378 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~-----~~~~~~-k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~~~-----g------ 378 (448)
.. ..+..+..... ...... ....+..++.. ..++++||||++++.|+.++..|.+. .
T Consensus 196 --~~--~r~vpl~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~ 271 (674)
T PRK01172 196 --SN--FRPVPLKLGILYRKRLILDGYERSQVDINSLIKETVNDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSE 271 (674)
T ss_pred --CC--CCCCCeEEEEEecCeeeecccccccccHHHHHHHHHhCCCcEEEEeccHHHHHHHHHHHHHhhhhccccccccc
Confidence 00 00111111110 111111 11112233322 24679999999999999999988653 1
Q ss_pred --------------CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 379 --------------FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 379 --------------~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..+.++||+|++++|..+++.|++|. +.|.++|+.
T Consensus 272 ~~~~~~~~L~~~l~~gv~~~hagl~~~eR~~ve~~f~~g~--i~VLvaT~~ 320 (674)
T PRK01172 272 NNNVYDDSLNEMLPHGVAFHHAGLSNEQRRFIEEMFRNRY--IKVIVATPT 320 (674)
T ss_pred ccccccHHHHHHHhcCEEEecCCCCHHHHHHHHHHHHcCC--CeEEEecch
Confidence 24788999999999999999999987 577777764
No 50
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.98 E-value=8e-31 Score=282.89 Aligned_cols=263 Identities=17% Similarity=0.133 Sum_probs=202.7
Q ss_pred eeccCCCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHH
Q psy1548 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 194 (448)
Q Consensus 121 ~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 194 (448)
++|. |++. |+. +++.++.+ +|++++||||+|||.+|++|++..+.. +.+++|++||++||.
T Consensus 448 ~~f~-~T~~---Q~~------aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~---g~qvlvLvPT~~LA~ 514 (926)
T TIGR00580 448 FPFE-ETPD---QLK------AIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLD---GKQVAVLVPTTLLAQ 514 (926)
T ss_pred CCCC-CCHH---HHH------HHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHh---CCeEEEEeCcHHHHH
Confidence 3464 7888 999 99998875 799999999999999999999988754 358999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh
Q psy1548 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 195 q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~ 271 (448)
|+++.++++...+ ++++..++|+.+..++ ...+..+.++|+||||.. + .+.+.+++++++||||+|++..
T Consensus 515 Q~~~~f~~~~~~~-~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~l----l-~~~v~f~~L~llVIDEahrfgv- 587 (926)
T TIGR00580 515 QHFETFKERFANF-PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKL----L-QKDVKFKDLGLLIIDEEQRFGV- 587 (926)
T ss_pred HHHHHHHHHhccC-CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHH----h-hCCCCcccCCEEEeecccccch-
Confidence 9999999988877 7889889887764433 334556679999999943 2 3456789999999999997532
Q ss_pred hhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhh
Q psy1548 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV 351 (448)
Q Consensus 272 ~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~ 351 (448)
.....++.++.+.|+++||||+.+....+....+.++..+...+.. ...+..++...........+...+.
T Consensus 588 -----~~~~~L~~~~~~~~vL~~SATpiprtl~~~l~g~~d~s~I~~~p~~---R~~V~t~v~~~~~~~i~~~i~~el~- 658 (926)
T TIGR00580 588 -----KQKEKLKELRTSVDVLTLSATPIPRTLHMSMSGIRDLSIIATPPED---RLPVRTFVMEYDPELVREAIRRELL- 658 (926)
T ss_pred -----hHHHHHHhcCCCCCEEEEecCCCHHHHHHHHhcCCCcEEEecCCCC---ccceEEEEEecCHHHHHHHHHHHHH-
Confidence 2344556677789999999998777666666666677766654442 2235555443332211222222222
Q ss_pred CCCCeEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 352 LEFNQVVIFVKSVTRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 352 ~~~~~~IIF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
.+++++||||+++.++.+++.|++. ++++..+||+|++++|.+++++|++|+ ..|+++|+-
T Consensus 659 -~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~Gk--~~ILVaT~i 721 (926)
T TIGR00580 659 -RGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKGE--FQVLVCTTI 721 (926)
T ss_pred -cCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcCC--CCEEEECCh
Confidence 4679999999999999999999985 789999999999999999999999998 578888775
No 51
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=1.6e-29 Score=278.27 Aligned_cols=261 Identities=15% Similarity=0.133 Sum_probs=205.6
Q ss_pred eccCCCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 122 NYDMPEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 122 ~~~~p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
+| .|++. |++ +|+.++.+ +|++++++||+|||.+|+.+++..+. .+.+++|++||++||.|
T Consensus 598 ~~-~~T~~---Q~~------aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~---~g~qvlvLvPT~eLA~Q 664 (1147)
T PRK10689 598 PF-ETTPD---QAQ------AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE---NHKQVAVLVPTTLLAQQ 664 (1147)
T ss_pred CC-CCCHH---HHH------HHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH---cCCeEEEEeCcHHHHHH
Confidence 35 68888 999 99999887 89999999999999999988877653 35689999999999999
Q ss_pred HHHHHHHhhccCCCceEEEEEcCcccHHhHHH---HhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhh
Q psy1548 196 ISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY---LKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272 (448)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~---l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~ 272 (448)
+++.+++..... ++++..++|+.+..++... +..+.++|+||||+.+ . ..+.+++++++||||+|++..
T Consensus 665 ~~~~f~~~~~~~-~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL----~-~~v~~~~L~lLVIDEahrfG~-- 736 (1147)
T PRK10689 665 HYDNFRDRFANW-PVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLL----Q-SDVKWKDLGLLIVDEEHRFGV-- 736 (1147)
T ss_pred HHHHHHHhhccC-CceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHH----h-CCCCHhhCCEEEEechhhcch--
Confidence 999999877666 6888888888776665443 3445689999999643 2 345678999999999998722
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcc-hHHHHHHHHHhh
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN-EKNKKLFELLDV 351 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~ 351 (448)
. ....++.++.++|+++||||+.+....++...+.++..+...+... ..+++++...... .+...+.++.
T Consensus 737 ~----~~e~lk~l~~~~qvLl~SATpiprtl~l~~~gl~d~~~I~~~p~~r---~~v~~~~~~~~~~~~k~~il~el~-- 807 (1147)
T PRK10689 737 R----HKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDLSIIATPPARR---LAVKTFVREYDSLVVREAILREIL-- 807 (1147)
T ss_pred h----HHHHHHhcCCCCcEEEEcCCCCHHHHHHHHhhCCCcEEEecCCCCC---CCceEEEEecCcHHHHHHHHHHHh--
Confidence 2 2344577788999999999998888888888888888877655422 2344444433322 2333333443
Q ss_pred CCCCeEEEEECccHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 352 LEFNQVVIFVKSVTRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 352 ~~~~~~IIF~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
.+++++||||+++.++.+++.|++. +..+..+||+|++++|.+++++|++|+ ..|+++|+-
T Consensus 808 -r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~Gk--~~VLVaTdI 870 (1147)
T PRK10689 808 -RGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR--FNVLVCTTI 870 (1147)
T ss_pred -cCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhcC--CCEEEECch
Confidence 3679999999999999999999987 789999999999999999999999998 577777764
No 52
>PRK14701 reverse gyrase; Provisional
Probab=99.97 E-value=8.2e-30 Score=286.72 Aligned_cols=265 Identities=17% Similarity=0.173 Sum_probs=206.4
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
| .|+++ |++ ++|.++.|+|++++||||+|||++++++++... ..+.+++||+||++|+.|+.+.++.
T Consensus 78 ~-~pt~i---Q~~------~i~~il~G~d~li~APTGsGKTl~~~~~al~~~---~~g~~aLVl~PTreLa~Qi~~~l~~ 144 (1638)
T PRK14701 78 F-EFWSI---QKT------WAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA---LKGKKCYIILPTTLLVKQTVEKIES 144 (1638)
T ss_pred C-CCCHH---HHH------HHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH---hcCCeEEEEECHHHHHHHHHHHHHH
Confidence 8 59999 999 999999999999999999999997766665442 2356899999999999999999999
Q ss_pred hhccCC-CceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-------
Q psy1548 203 FSKYMS-NIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ------- 271 (448)
Q Consensus 203 ~~~~~~-~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~------- 271 (448)
++..++ ++++..++|+.+...+. ..+..+.++|+|+||+++.+.+... . ..+++++|+||||+|++|
T Consensus 145 l~~~~~~~v~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~~~knid~~ 222 (1638)
T PRK14701 145 FCEKANLDVRLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLKASKNIDRS 222 (1638)
T ss_pred HHhhcCCceeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccccccccchh
Confidence 987652 46777888988766553 3455666999999999998766532 1 267899999999999863
Q ss_pred ---hhhHHHHHH----HHH----------------------hCCCCCe-EEEEeccCCccHHHHHHHhcCCCeEEEEcCc
Q psy1548 272 ---LEMRRDVQE----IFR----------------------SSPHTKQ-VMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321 (448)
Q Consensus 272 ---~~~~~~~~~----i~~----------------------~l~~~~q-~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~ 321 (448)
.+|.+++.. +++ .+++..| ++++|||+++. .....++.++..+.+...
T Consensus 223 L~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r--~~~~~l~~~~l~f~v~~~ 300 (1638)
T PRK14701 223 LQLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAK--GDRVKLYRELLGFEVGSG 300 (1638)
T ss_pred hhcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCch--hHHHHHhhcCeEEEecCC
Confidence 378877764 332 2344555 67799999864 112234567777777665
Q ss_pred ccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHH---HHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy1548 322 AKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTR---CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 322 ~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~---a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~ 398 (448)
.....++.+.|+.+....| ..+..+++.. +.++||||+|++. |+.+++.|++.|+++..+||+ |..+++
T Consensus 301 -~~~lr~i~~~yi~~~~~~k-~~L~~ll~~~-g~~gIVF~~t~~~~e~ae~la~~L~~~Gi~a~~~h~~-----R~~~l~ 372 (1638)
T PRK14701 301 -RSALRNIVDVYLNPEKIIK-EHVRELLKKL-GKGGLIFVPIDEGAEKAEEIEKYLLEDGFKIELVSAK-----NKKGFD 372 (1638)
T ss_pred -CCCCCCcEEEEEECCHHHH-HHHHHHHHhC-CCCeEEEEeccccchHHHHHHHHHHHCCCeEEEecch-----HHHHHH
Confidence 4566788899887766655 5677888776 4689999999875 589999999999999999995 899999
Q ss_pred HHhcCCCceEEEEecC
Q psy1548 399 EFKDFHKGLAITFASD 414 (448)
Q Consensus 399 ~F~~g~~g~~I~~~t~ 414 (448)
+|++|+. .|+++|.
T Consensus 373 ~F~~G~~--~VLVaT~ 386 (1638)
T PRK14701 373 LFEEGEI--DYLIGVA 386 (1638)
T ss_pred HHHcCCC--CEEEEec
Confidence 9999994 5666663
No 53
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.97 E-value=6.8e-30 Score=233.63 Aligned_cols=200 Identities=38% Similarity=0.650 Sum_probs=181.1
Q ss_pred cccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCCh
Q psy1548 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMG 161 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsG 161 (448)
|+++++++.+.+.+.+.+ +..|++. |++ +++.+..|+|+++.+|||+|
T Consensus 1 ~~~~~~~~~i~~~l~~~~-----------------------~~~~~~~---Q~~------~~~~~~~~~~~li~~~TG~G 48 (203)
T cd00268 1 FEELGLSPELLRGIYALG-----------------------FEKPTPI---QAR------AIPPLLSGRDVIGQAQTGSG 48 (203)
T ss_pred CCcCCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhcCCcEEEECCCCCc
Confidence 678899999999999998 8888888 999 99999999999999999999
Q ss_pred hHHHHHHHHHHhhhcc--CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 162 KTAVFVLATLQQLETT--DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 162 KT~~~~l~~l~~l~~~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
||++|++|+++.+... ..+++++|++|+++|+.|+...++.+.... ++++..+.|+.+.......+.. .++|+|+|
T Consensus 49 KT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~iiv~T 126 (203)
T cd00268 49 KTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT-NLKVVVIYGGTSIDKQIRKLKR-GPHIVVAT 126 (203)
T ss_pred HHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHhcC-CCCEEEEC
Confidence 9999999999988776 467799999999999999999999998776 7899999999887666555553 48999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEE
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i 316 (448)
|+++.+++.+....+.+++++|+||+|.+.+. ++...+..+++.++..+|++++|||+++....++..++.+|..+
T Consensus 127 ~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~-~~~~~~~~~~~~l~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~ 202 (203)
T cd00268 127 PGRLLDLLERGKLDLSKVKYLVLDEADRMLDM-GFEDQIREILKLLPKDRQTLLFSATMPKEVRDLARKFLRNPVRI 202 (203)
T ss_pred hHHHHHHHHcCCCChhhCCEEEEeChHHhhcc-ChHHHHHHHHHhCCcccEEEEEeccCCHHHHHHHHHHCCCCEEe
Confidence 99999999888888899999999999999887 89999999999999999999999999999999999999988765
No 54
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.97 E-value=2.5e-29 Score=277.77 Aligned_cols=262 Identities=18% Similarity=0.289 Sum_probs=198.1
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
...|+++ |+. ++|.++.|+|++++||||+|||+ |.+|+...+.. .+++++|++||++||.|+.+.++.
T Consensus 76 g~~p~~i---Q~~------~i~~il~G~d~vi~ApTGsGKT~-f~l~~~~~l~~--~g~~vLIL~PTreLa~Qi~~~l~~ 143 (1171)
T TIGR01054 76 GSEPWSI---QKM------WAKRVLRGDSFAIIAPTGVGKTT-FGLAMSLFLAK--KGKRCYIILPTTLLVIQVAEKISS 143 (1171)
T ss_pred CCCCcHH---HHH------HHHHHhCCCeEEEECCCCCCHHH-HHHHHHHHHHh--cCCeEEEEeCHHHHHHHHHHHHHH
Confidence 4479999 999 99999999999999999999996 66777665543 356899999999999999999999
Q ss_pred hhccCCCceE---EEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-----
Q psy1548 203 FSKYMSNIKV---GVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ----- 271 (448)
Q Consensus 203 ~~~~~~~~~v---~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~----- 271 (448)
+.... ++.+ +.++|+.+...+ ...+.++.++|+|+||++|.+.+.. +.. +++++|+||||+|+++
T Consensus 144 l~~~~-~i~~~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~~~k~vd 219 (1171)
T TIGR01054 144 LAEKA-GVGTVNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLKASKNVD 219 (1171)
T ss_pred HHHhc-CCceeeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhhccccHH
Confidence 98766 5543 356788776554 2344556699999999999887764 212 8899999999999873
Q ss_pred -----hhhHHH-HHHH----------------------HHhCCCCCe--EEEEecc-CCccHHHHHHHhcCCCeEEEEcC
Q psy1548 272 -----LEMRRD-VQEI----------------------FRSSPHTKQ--VMMFSAT-LSKEIRPVCKKFMHDPMEVYVDD 320 (448)
Q Consensus 272 -----~~~~~~-~~~i----------------------~~~l~~~~q--~i~~SAT-~~~~~~~~~~~~l~~~~~i~~~~ 320 (448)
.||..+ +..+ ++.+++.+| ++++||| +|..+.. .++.++..+.+..
T Consensus 220 ~il~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~---~l~r~ll~~~v~~ 296 (1171)
T TIGR01054 220 KLLKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRA---KLFRELLGFEVGG 296 (1171)
T ss_pred HHHHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHH---HHcccccceEecC
Confidence 256653 4443 233455555 6778999 5655432 2344555566555
Q ss_pred cccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECcc---HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 321 EAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSV---TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 321 ~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~---~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
. .....++.+.|..... +...|.++++.. +.++||||+++ +.|+.+++.|++.|+++..+||+|++ .++
T Consensus 297 ~-~~~~r~I~~~~~~~~~--~~~~L~~ll~~l-~~~~IVFv~t~~~~~~a~~l~~~L~~~g~~a~~lhg~~~~----~~l 368 (1171)
T TIGR01054 297 G-SDTLRNVVDVYVEDED--LKETLLEIVKKL-GTGGIVYVSIDYGKEKAEEIAEFLENHGVKAVAYHATKPK----EDY 368 (1171)
T ss_pred c-cccccceEEEEEeccc--HHHHHHHHHHHc-CCCEEEEEeccccHHHHHHHHHHHHhCCceEEEEeCCCCH----HHH
Confidence 4 4456788888876554 345677777765 36799999999 99999999999999999999999973 789
Q ss_pred HHHhcCCCceEEEEec
Q psy1548 398 QEFKDFHKGLAITFAS 413 (448)
Q Consensus 398 ~~F~~g~~g~~I~~~t 413 (448)
++|++|+. .|+++|
T Consensus 369 ~~Fr~G~~--~vLVat 382 (1171)
T TIGR01054 369 EKFAEGEI--DVLIGV 382 (1171)
T ss_pred HHHHcCCC--CEEEEe
Confidence 99999995 455553
No 55
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.97 E-value=4.5e-29 Score=265.52 Aligned_cols=259 Identities=19% Similarity=0.182 Sum_probs=186.6
Q ss_pred CCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHH
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 199 (448)
|++. |++ +++.+..+ ++++++||||||||++|++|++..+. .+.+++|++||++||.|+++.
T Consensus 262 lt~~---Q~~------ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~---~g~q~lilaPT~~LA~Q~~~~ 329 (681)
T PRK10917 262 LTGA---QKR------VVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE---AGYQAALMAPTEILAEQHYEN 329 (681)
T ss_pred CCHH---HHH------HHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH---cCCeEEEEeccHHHHHHHHHH
Confidence 5555 999 99998886 48999999999999999999998774 356899999999999999999
Q ss_pred HHHhhccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHH
Q psy1548 200 YERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRR 276 (448)
Q Consensus 200 ~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~ 276 (448)
++++...+ ++++..++|+.+.... ...+..+.++|+||||+.+.. ...+++++++|+||+|++.. ..+.
T Consensus 330 l~~l~~~~-~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~--~qr~ 401 (681)
T PRK10917 330 LKKLLEPL-GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGV--EQRL 401 (681)
T ss_pred HHHHHhhc-CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhH--HHHH
Confidence 99999887 8999999999875433 345566679999999987643 34578999999999998643 2222
Q ss_pred HHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchH-HHHHHHHHhhCCCC
Q psy1548 277 DVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK-NKKLFELLDVLEFN 355 (448)
Q Consensus 277 ~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~~~~~~ 355 (448)
.+.......++++||||+.+....+......++..+...+. ....+...+.......+ .+.+...+ ..++
T Consensus 402 ----~l~~~~~~~~iL~~SATp~prtl~~~~~g~~~~s~i~~~p~---~r~~i~~~~~~~~~~~~~~~~i~~~~--~~g~ 472 (681)
T PRK10917 402 ----ALREKGENPHVLVMTATPIPRTLAMTAYGDLDVSVIDELPP---GRKPITTVVIPDSRRDEVYERIREEI--AKGR 472 (681)
T ss_pred ----HHHhcCCCCCEEEEeCCCCHHHHHHHHcCCCceEEEecCCC---CCCCcEEEEeCcccHHHHHHHHHHHH--HcCC
Confidence 23334556789999999876644433221122222221111 12234444433222222 12233333 2466
Q ss_pred eEEEEECcc--------HHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 356 QVVIFVKSV--------TRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 356 ~~IIF~~s~--------~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+++|||+.. ..++.+++.|++. ++++..+||+|++++|.+++++|++|+ +.|+++|+-
T Consensus 473 q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~--~~ILVaT~v 540 (681)
T PRK10917 473 QAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKAGE--IDILVATTV 540 (681)
T ss_pred cEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEECcc
Confidence 999999964 4566778888775 578999999999999999999999987 567777764
No 56
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.97 E-value=5.9e-29 Score=266.82 Aligned_cols=306 Identities=20% Similarity=0.221 Sum_probs=232.6
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
...+.+. |.+ ++..+.+|+|++|++|||||||.+|++|+++.+...+.. ++|+|.||++|++++.+.+++
T Consensus 68 ~~~lY~H---Q~~------A~~~~~~G~~vvVtTgTgSGKTe~FllPIld~~l~~~~a-~AL~lYPtnALa~DQ~~rl~~ 137 (851)
T COG1205 68 IERLYSH---QVD------ALRLIREGRNVVVTTGTGSGKTESFLLPILDHLLRDPSA-RALLLYPTNALANDQAERLRE 137 (851)
T ss_pred cccccHH---HHH------HHHHHHCCCCEEEECCCCCchhHHHHHHHHHHHhhCcCc-cEEEEechhhhHhhHHHHHHH
Confidence 5554444 999 999999999999999999999999999999999887655 899999999999999999999
Q ss_pred hhccCC-CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC----CcCCCeeEEEecchhHHHhhhhhHHH
Q psy1548 203 FSKYMS-NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK----LNLSLLKHFILDECDKMLEQLEMRRD 277 (448)
Q Consensus 203 ~~~~~~-~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~----~~~~~i~~lViDEah~l~~~~~~~~~ 277 (448)
+...++ ++.+..+.|+++..... .+..++|+|+++||++|..++.... ..++++++||+||+|..-. .|+..
T Consensus 138 ~~~~~~~~v~~~~y~Gdt~~~~r~-~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrG--v~GS~ 214 (851)
T COG1205 138 LISDLPGKVTFGRYTGDTPPEERR-AIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRG--VQGSE 214 (851)
T ss_pred HHHhCCCcceeeeecCCCChHHHH-HHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccc--cchhH
Confidence 999885 58888888988755544 4455569999999999988554422 3357899999999996644 45555
Q ss_pred HHHHHHh-------CCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcC---------cchH
Q psy1548 278 VQEIFRS-------SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK---------ENEK 341 (448)
Q Consensus 278 ~~~i~~~-------l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~~~k 341 (448)
+..+++. .+.+.|+|+.|||+.+. .+++..+........++.. ..+...+......+ ...+
T Consensus 215 vA~llRRL~~~~~~~~~~~q~i~~SAT~~np-~e~~~~l~~~~f~~~v~~~--g~~~~~~~~~~~~p~~~~~~~~~r~s~ 291 (851)
T COG1205 215 VALLLRRLLRRLRRYGSPLQIICTSATLANP-GEFAEELFGRDFEVPVDED--GSPRGLRYFVRREPPIRELAESIRRSA 291 (851)
T ss_pred HHHHHHHHHHHHhccCCCceEEEEeccccCh-HHHHHHhcCCcceeeccCC--CCCCCceEEEEeCCcchhhhhhcccch
Confidence 5555444 34578999999999766 5666777766666543333 23444555555544 1234
Q ss_pred HHHHHHHHhhC--CCCeEEEEECccHHHHHHH----HHHHhCC----CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEE
Q psy1548 342 NKKLFELLDVL--EFNQVVIFVKSVTRCIALS----TLLSEQN----FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITF 411 (448)
Q Consensus 342 ~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~----~~L~~~g----~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~ 411 (448)
...+..++... .+-++|+|+.++..++.++ ..+...+ ..+..++++|..++|.++..+|++|+ +.+.+
T Consensus 292 ~~~~~~~~~~~~~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~~~~g~--~~~~~ 369 (851)
T COG1205 292 LAELATLAALLVRNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAEFKEGE--LLGVI 369 (851)
T ss_pred HHHHHHHHHHHHHcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHHHhcCC--ccEEe
Confidence 44444444332 4569999999999999998 4454555 56899999999999999999999998 34445
Q ss_pred ecChhhHHHHHHHHHHhcCCCCCCCc-cccccccccCC
Q psy1548 412 ASDENDAKILNNVQDRFDVSISELPD-EIDLSTYIEGR 448 (448)
Q Consensus 412 ~t~~~d~~~l~~i~~~~~~~~~~~p~-~~~~~~~~~~~ 448 (448)
.|.. .+.--+|.+...+..+..|. ..-.+.++.||
T Consensus 370 st~A--lelgidiG~ldavi~~g~P~~s~~~~~Q~~GR 405 (851)
T COG1205 370 ATNA--LELGIDIGSLDAVIAYGYPGVSVLSFRQRAGR 405 (851)
T ss_pred cchh--hhhceeehhhhhHhhcCCCCchHHHHHHhhhh
Confidence 4554 44445889999999999999 66778888776
No 57
>KOG0349|consensus
Probab=99.96 E-value=6.2e-29 Score=235.44 Aligned_cols=258 Identities=25% Similarity=0.414 Sum_probs=204.7
Q ss_pred CeEEEEeeccHHHHHHHHHHHHHhhccC--CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCe
Q psy1548 180 NVYVLVMCHTRELAFQISKEYERFSKYM--SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257 (448)
Q Consensus 180 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~--~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i 257 (448)
.+.++|+-|+++|+.|.+..+++|..+. |.++..++.||.....|...++++ .+|+|+||+++.+++..+.+.+.++
T Consensus 286 ap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g-~~ivvGtpgRl~~~is~g~~~lt~c 364 (725)
T KOG0349|consen 286 APEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDG-THIVVGTPGRLLQPISKGLVTLTHC 364 (725)
T ss_pred CcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcC-ceeeecCchhhhhhhhccceeeeee
Confidence 4789999999999999999888877665 356777889998888899899887 8999999999999999999999999
Q ss_pred eEEEecchhHHHhhhhhHHHHHHHHHhCCC------CCeEEEEeccCCc-cHHHHHHHhcCCCeEEEEcCccccccccee
Q psy1548 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPH------TKQVMMFSATLSK-EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330 (448)
Q Consensus 258 ~~lViDEah~l~~~~~~~~~~~~i~~~l~~------~~q~i~~SAT~~~-~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~ 330 (448)
+++|+||++.++.. ++-+.+..+...+|+ ..|.+.+|||+.. ++.++..+.|.-|..+....+ ...+..+.
T Consensus 365 rFlvlDead~lL~q-gy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVkk~~ervmhfptwVdLkge-D~vpetvH 442 (725)
T KOG0349|consen 365 RFLVLDEADLLLGQ-GYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVKKVGERVMHFPTWVDLKGE-DLVPETVH 442 (725)
T ss_pred EEEEecchhhhhhc-ccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEeeehhhhhccCceeEecccc-cccchhhc
Confidence 99999999999997 888888888777663 4589999999864 577788888888988887666 34444444
Q ss_pred EEEEEcCcc----------------------------------h-----HHHHHHHHHhhCCCCeEEEEECccHHHHHHH
Q psy1548 331 QHYVKLKEN----------------------------------E-----KNKKLFELLDVLEFNQVVIFVKSVTRCIALS 371 (448)
Q Consensus 331 ~~~~~~~~~----------------------------------~-----k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~ 371 (448)
+....+.+. + |-+.-...++.+.-.++||||.|+..|+.|.
T Consensus 443 hvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLe 522 (725)
T KOG0349|consen 443 HVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLE 522 (725)
T ss_pred cceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhhccCceEEEEeccccchHHH
Confidence 443332210 0 1111122334445568999999999999999
Q ss_pred HHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCC--------------------------------------------
Q psy1548 372 TLLSEQN---FPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------------------- 404 (448)
Q Consensus 372 ~~L~~~g---~~~~~lh~~~~~~eR~~~l~~F~~g~-------------------------------------------- 404 (448)
+.|.+.| +.+.++||+..++||..-++.|+.+.
T Consensus 523 r~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~dvkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgra 602 (725)
T KOG0349|consen 523 RMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKFDVKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRA 602 (725)
T ss_pred HHHHHcCCccceeEEEecCCChhHHHHHHHhhhhcCeEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchh
Confidence 9998874 58999999999999999999999988
Q ss_pred --CceEEEEecCh-------------------------------hhHHHHHHHHHHhcCCCCCCCcccc
Q psy1548 405 --KGLAITFASDE-------------------------------NDAKILNNVQDRFDVSISELPDEID 440 (448)
Q Consensus 405 --~g~~I~~~t~~-------------------------------~d~~~l~~i~~~~~~~~~~~p~~~~ 440 (448)
.|++|+++.+. .+..+|.+||+.+++.|+++-.+++
T Consensus 603 ermglaislvat~~ekvwyh~c~srgr~c~nt~l~e~~gc~iwyne~~llaeve~hln~ti~qv~~~~~ 671 (725)
T KOG0349|consen 603 ERMGLAISLVATVPEKVWYHWCKSRGRSCNNTNLTEVRGCCIWYNEPNLLAEVEDHLNITIQQVDKTMD 671 (725)
T ss_pred hhcceeEEEeeccchheeehhhhccCCcccCCccccccceEEEeCchhHHHHHHHhhcceeeeeCCCCC
Confidence 56666666442 1577888999999999998876655
No 58
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.96 E-value=1.1e-29 Score=257.08 Aligned_cols=299 Identities=18% Similarity=0.173 Sum_probs=217.4
Q ss_pred eeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 121 ~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
++|....+- |++ +|..+++|+|+++..|||+|||+||.+|++-. ..-+|||+|..+|..++.+.+
T Consensus 13 fGy~~FR~g---Q~e------vI~~~l~g~d~lvvmPTGgGKSlCyQiPAll~------~G~TLVVSPLiSLM~DQV~~l 77 (590)
T COG0514 13 FGYASFRPG---QQE------IIDALLSGKDTLVVMPTGGGKSLCYQIPALLL------EGLTLVVSPLISLMKDQVDQL 77 (590)
T ss_pred hCccccCCC---HHH------HHHHHHcCCcEEEEccCCCCcchHhhhHHHhc------CCCEEEECchHHHHHHHHHHH
Confidence 346666677 999 99999999999999999999999999999875 227999999999999888888
Q ss_pred HHhhccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-hhhHH
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-LEMRR 276 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~ 276 (448)
+.. ++.+..+.+..+..+. ...+..+..++++-+|+++..---.+.+.-..+.++||||||++.+| ++|++
T Consensus 78 ~~~-----Gi~A~~lnS~l~~~e~~~v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP 152 (590)
T COG0514 78 EAA-----GIRAAYLNSTLSREERQQVLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRP 152 (590)
T ss_pred HHc-----CceeehhhcccCHHHHHHHHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCH
Confidence 775 6788888777654443 33456667899999999986432222222456778999999999999 45999
Q ss_pred HHHHHHHhCC--CCCeEEEEeccCCccHHHHHHHhcC--CCeEEEEcCcccccccceeEEEEEcC-cchHHHHHHHHHhh
Q psy1548 277 DVQEIFRSSP--HTKQVMMFSATLSKEIRPVCKKFMH--DPMEVYVDDEAKLTLHGLQQHYVKLK-ENEKNKKLFELLDV 351 (448)
Q Consensus 277 ~~~~i~~~l~--~~~q~i~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~ 351 (448)
.+..+-.... ++.+++++|||.++.+...+...+. .+..+.... ..+++........ ...+...+.+ ...
T Consensus 153 ~Y~~lg~l~~~~~~~p~~AlTATA~~~v~~DI~~~L~l~~~~~~~~sf----dRpNi~~~v~~~~~~~~q~~fi~~-~~~ 227 (590)
T COG0514 153 DYRRLGRLRAGLPNPPVLALTATATPRVRDDIREQLGLQDANIFRGSF----DRPNLALKVVEKGEPSDQLAFLAT-VLP 227 (590)
T ss_pred hHHHHHHHHhhCCCCCEEEEeCCCChHHHHHHHHHhcCCCcceEEecC----CCchhhhhhhhcccHHHHHHHHHh-hcc
Confidence 9998754332 3788999999999998887776554 443433322 2344433322222 2233333332 124
Q ss_pred CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 352 LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 352 ~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
...+..||||.|++.++.++++|...|+++..||+||+.++|..+.+.|..++ +.|.++|...=+++ +-.+.--+.
T Consensus 228 ~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~~--~~iiVAT~AFGMGI--dKpdVRfVi 303 (590)
T COG0514 228 QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLNDE--IKVMVATNAFGMGI--DKPDVRFVI 303 (590)
T ss_pred ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcCC--CcEEEEeccccCcc--CCCCceEEE
Confidence 45567999999999999999999999999999999999999999999999877 57777777421111 111111145
Q ss_pred CCCCCccccccccccCC
Q psy1548 432 ISELPDEIDLSTYIEGR 448 (448)
Q Consensus 432 ~~~~p~~~~~~~~~~~~ 448 (448)
+..+|.+++.+-+=.||
T Consensus 304 H~~lP~s~EsYyQE~GR 320 (590)
T COG0514 304 HYDLPGSIESYYQETGR 320 (590)
T ss_pred EecCCCCHHHHHHHHhh
Confidence 66778887766655554
No 59
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=1e-28 Score=261.57 Aligned_cols=265 Identities=20% Similarity=0.221 Sum_probs=199.4
Q ss_pred hhhhccccccceee-eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCce
Q psy1548 133 LHRVARAGRFGTKA-VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211 (448)
Q Consensus 133 Q~~~~~~~~~~~~~-~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 211 (448)
|++ ++... ..|+|+|+++|||||||+.+++.+++.+... +.+++|+||+++||.+.++.+++|... +++
T Consensus 36 qq~------av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~~~--~~k~vYivPlkALa~Ek~~~~~~~~~~--Gir 105 (766)
T COG1204 36 QQE------AVEKGLLSDENVLISAPTGSGKTLIALLAILSTLLEG--GGKVVYIVPLKALAEEKYEEFSRLEEL--GIR 105 (766)
T ss_pred HHH------HhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHHhc--CCcEEEEeChHHHHHHHHHHhhhHHhc--CCE
Confidence 777 55444 4469999999999999999999999988765 458999999999999999999955443 899
Q ss_pred EEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC---CC
Q psy1548 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP---HT 288 (448)
Q Consensus 212 v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~---~~ 288 (448)
+...+|+.+.... .+. .++|+|+||+++-.++++...+...++++|+||+|.+.+. ..++.++.+..... ..
T Consensus 106 V~~~TgD~~~~~~--~l~--~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~-~RG~~lE~iv~r~~~~~~~ 180 (766)
T COG1204 106 VGISTGDYDLDDE--RLA--RYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDR-TRGPVLESIVARMRRLNEL 180 (766)
T ss_pred EEEecCCcccchh--hhc--cCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCc-ccCceehhHHHHHHhhCcc
Confidence 9999999875442 222 3799999999999999998888999999999999988775 57777777766554 34
Q ss_pred CeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchH-------HHHHHHHHhhC-CCCeEEEE
Q psy1548 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEK-------NKKLFELLDVL-EFNQVVIF 360 (448)
Q Consensus 289 ~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-------~~~L~~ll~~~-~~~~~IIF 360 (448)
.|++++|||+|+. .+++.+.-.++......+..........+.+.......| ...+...+... .+++++||
T Consensus 181 ~rivgLSATlpN~-~evA~wL~a~~~~~~~rp~~l~~~v~~~~~~~~~~~~~k~~~~~~~~~~~~~v~~~~~~~~qvLvF 259 (766)
T COG1204 181 IRIVGLSATLPNA-EEVADWLNAKLVESDWRPVPLRRGVPYVGAFLGADGKKKTWPLLIDNLALELVLESLAEGGQVLVF 259 (766)
T ss_pred eEEEEEeeecCCH-HHHHHHhCCcccccCCCCcccccCCccceEEEEecCccccccccchHHHHHHHHHHHhcCCeEEEE
Confidence 7999999999865 567777666655333333322222333344443332222 23333333333 46799999
Q ss_pred ECccHHHHHHHHHHHhC---------------------C----------------CcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 361 VKSVTRCIALSTLLSEQ---------------------N----------------FPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~---------------------g----------------~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
|+|++.+...|+.|.+. + ..+.++|+||+.++|.-+.+.|+.|
T Consensus 260 v~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g 339 (766)
T COG1204 260 VHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKG 339 (766)
T ss_pred EecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcC
Confidence 99999999999999830 0 1278899999999999999999998
Q ss_pred CCceEEEEecCh
Q psy1548 404 HKGLAITFASDE 415 (448)
Q Consensus 404 ~~g~~I~~~t~~ 415 (448)
+ +.|.++|+.
T Consensus 340 ~--ikVlv~TpT 349 (766)
T COG1204 340 K--IKVLVSTPT 349 (766)
T ss_pred C--ceEEEechH
Confidence 8 677777764
No 60
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=240.05 Aligned_cols=283 Identities=20% Similarity=0.202 Sum_probs=226.2
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeec
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQA 156 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~a 156 (448)
+....+++.++++..+-+...| +....|+ |.. ++.. ++.|+|.++.+
T Consensus 192 ~r~~vdeLdipe~fk~~lk~~G-----------------------~~eLlPV---Q~l------aVe~GLLeG~nllVVS 239 (830)
T COG1202 192 ERVPVDELDIPEKFKRMLKREG-----------------------IEELLPV---QVL------AVEAGLLEGENLLVVS 239 (830)
T ss_pred ccccccccCCcHHHHHHHHhcC-----------------------cceecch---hhh------hhhhccccCCceEEEe
Confidence 3445788999999999999999 9999999 999 6643 67899999999
Q ss_pred cCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH---hcCCC
Q psy1548 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL---KTHNP 233 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l---~~~~~ 233 (448)
+|+||||++.-++-+..+... +.+.|+++|..+||+|-++.|+.-...+ ++++..-.|-..+....... ..-.+
T Consensus 240 aTasGKTLIgElAGi~~~l~~--g~KmlfLvPLVALANQKy~dF~~rYs~L-glkvairVG~srIk~~~~pv~~~t~~dA 316 (830)
T COG1202 240 ATASGKTLIGELAGIPRLLSG--GKKMLFLVPLVALANQKYEDFKERYSKL-GLKVAIRVGMSRIKTREEPVVVDTSPDA 316 (830)
T ss_pred ccCCCcchHHHhhCcHHHHhC--CCeEEEEehhHHhhcchHHHHHHHhhcc-cceEEEEechhhhcccCCccccCCCCCC
Confidence 999999999998888877654 3479999999999999999998766666 78887777755433321111 11137
Q ss_pred cEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHH---HHHHhCCCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 234 QIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ---EIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 234 ~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~---~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
||+|||.+-+-.+++.+ -.+.++..+||||+|.+-+. ..+..+. .-++.+-+..|+|.+|||+.+. .++++.+.
T Consensus 317 DIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~de-ERG~RLdGLI~RLr~l~~~AQ~i~LSATVgNp-~elA~~l~ 393 (830)
T COG1202 317 DIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDE-ERGPRLDGLIGRLRYLFPGAQFIYLSATVGNP-EELAKKLG 393 (830)
T ss_pred cEEEeechhHHHHHHcC-CcccccceEEeeeeeeccch-hcccchhhHHHHHHHhCCCCeEEEEEeecCCh-HHHHHHhC
Confidence 99999999999999887 56899999999999987664 4444444 4455566789999999999766 67777776
Q ss_pred CCCeEEEEcCcccccccceeEEEEEcC-cchHHHHHHHHHhhC--------CCCeEEEEECccHHHHHHHHHHHhCCCcE
Q psy1548 311 HDPMEVYVDDEAKLTLHGLQQHYVKLK-ENEKNKKLFELLDVL--------EFNQVVIFVKSVTRCIALSTLLSEQNFPA 381 (448)
Q Consensus 311 ~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~--------~~~~~IIF~~s~~~a~~l~~~L~~~g~~~ 381 (448)
..++.+. ..+..+..+.+.+. ..+|.+.+..+++.. -.+++|||++|+..|..++..|...|+++
T Consensus 394 a~lV~y~------~RPVplErHlvf~~~e~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA~~L~~kG~~a 467 (830)
T COG1202 394 AKLVLYD------ERPVPLERHLVFARNESEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELADALTGKGLKA 467 (830)
T ss_pred CeeEeec------CCCCChhHeeeeecCchHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHHHHhhcCCccc
Confidence 6665543 23445666666666 678888888877542 24699999999999999999999999999
Q ss_pred EEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 382 VSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 382 ~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
.+||+||+..+|..+...|.+++
T Consensus 468 ~pYHaGL~y~eRk~vE~~F~~q~ 490 (830)
T COG1202 468 APYHAGLPYKERKSVERAFAAQE 490 (830)
T ss_pred ccccCCCcHHHHHHHHHHHhcCC
Confidence 99999999999999999999998
No 61
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.96 E-value=3.3e-28 Score=257.20 Aligned_cols=260 Identities=22% Similarity=0.229 Sum_probs=183.9
Q ss_pred CCCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
.|++. |++ +++.++.+ .+.+++||||||||++|++|++..+.. +.+++|++||++||.|+++
T Consensus 235 ~lt~~---Q~~------ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~---g~qvlilaPT~~LA~Q~~~ 302 (630)
T TIGR00643 235 KLTRA---QKR------VVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEA---GYQVALMAPTEILAEQHYN 302 (630)
T ss_pred CCCHH---HHH------HHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHc---CCcEEEECCHHHHHHHHHH
Confidence 45666 999 99988876 368999999999999999999988753 5589999999999999999
Q ss_pred HHHHhhccCCCceEEEEEcCcccHH---hHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH
Q psy1548 199 EYERFSKYMSNIKVGVFFGGLPIQK---DEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g~~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 275 (448)
.++++...+ ++++..++|+..... ....+..+.++|+|+||+.+.+ ...+.+++++|+||+|++.. ..+
T Consensus 303 ~~~~l~~~~-gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~--~qr 374 (630)
T TIGR00643 303 SLRNLLAPL-GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGV--EQR 374 (630)
T ss_pred HHHHHhccc-CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccH--HHH
Confidence 999998877 899999999987654 3445566678999999987643 35578999999999998643 222
Q ss_pred HHHHHHHHhCC--CCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhh--
Q psy1548 276 RDVQEIFRSSP--HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV-- 351 (448)
Q Consensus 276 ~~~~~i~~~l~--~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~-- 351 (448)
..+. .... ...++++||||+.+....+.....-+...+...+. ....+...+. ....+ ..+...+..
T Consensus 375 ~~l~---~~~~~~~~~~~l~~SATp~prtl~l~~~~~l~~~~i~~~p~---~r~~i~~~~~--~~~~~-~~~~~~i~~~l 445 (630)
T TIGR00643 375 KKLR---EKGQGGFTPHVLVMSATPIPRTLALTVYGDLDTSIIDELPP---GRKPITTVLI--KHDEK-DIVYEFIEEEI 445 (630)
T ss_pred HHHH---HhcccCCCCCEEEEeCCCCcHHHHHHhcCCcceeeeccCCC---CCCceEEEEe--CcchH-HHHHHHHHHHH
Confidence 2222 2222 26789999999766543332211111111111111 1123333332 22223 333333332
Q ss_pred CCCCeEEEEECcc--------HHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 352 LEFNQVVIFVKSV--------TRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 352 ~~~~~~IIF~~s~--------~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..+++++|||+.. ..++.+++.|++. ++++..+||+|++++|..++++|++|+ ..|+++|+-
T Consensus 446 ~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~g~--~~ILVaT~v 517 (630)
T TIGR00643 446 AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEEFREGE--VDILVATTV 517 (630)
T ss_pred HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHHHHcCC--CCEEEECce
Confidence 2467899999876 4567788888764 788999999999999999999999988 466666664
No 62
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=1.7e-28 Score=244.10 Aligned_cols=255 Identities=18% Similarity=0.217 Sum_probs=171.5
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccH--------
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ-------- 222 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~-------- 222 (448)
++++++|||||||++|++|++..+... .+.+++|++|+++|+.|+++.+..+.+ ..++.++|+....
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~~~~-~~~~ii~v~P~~~L~~q~~~~l~~~f~----~~~~~~~~~~~~~~~~~~~~~ 75 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSIKSQ-KADRVIIALPTRATINAMYRRAKELFG----SNLGLLHSSSSFKRIKEMGDS 75 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHHhhC-CCCeEEEEeehHHHHHHHHHHHHHHhC----cccEEeeccHHHHHHhccCCc
Confidence 589999999999999999999876543 345899999999999999999998753 2344444433210
Q ss_pred ---HhH-HHHhc-----CCCcEEEEcHHHHHHHHHCCC----CcCC--CeeEEEecchhHHHhhhhhHHHHHHHHHhCC-
Q psy1548 223 ---KDE-EYLKT-----HNPQIVVGTPGRILALVRNKK----LNLS--LLKHFILDECDKMLEQLEMRRDVQEIFRSSP- 286 (448)
Q Consensus 223 ---~~~-~~l~~-----~~~~IlV~Tp~~l~~~l~~~~----~~~~--~i~~lViDEah~l~~~~~~~~~~~~i~~~l~- 286 (448)
... ..... ...+|+|+||+++...+.... ..+. ..+++|+||+|.+.+. ++.. +..+++.++
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~-~~~~-l~~~l~~l~~ 153 (358)
T TIGR01587 76 EEFEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEY-TLAL-ILAVLEVLKD 153 (358)
T ss_pred hhHHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHH-HHHH-HHHHHHHHHH
Confidence 000 00001 125799999999988765521 1111 2378999999999875 4333 555555554
Q ss_pred CCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEc--CcchHHHHHHHHHhhC-CCCeEEEEECc
Q psy1548 287 HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKL--KENEKNKKLFELLDVL-EFNQVVIFVKS 363 (448)
Q Consensus 287 ~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~--~~~~k~~~L~~ll~~~-~~~~~IIF~~s 363 (448)
.+.|++++|||+|+.+.+++..+...+........ . ......+.+..+ ....+...+..+++.. .++++||||+|
T Consensus 154 ~~~~~i~~SATlp~~l~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~lVf~~t 231 (358)
T TIGR01587 154 NDVPILLMSATLPKFLKEYAEKIGYVEFNEPLDLK-E-ERRFERHRFIKIESDKVGEISSLERLLEFIKKGGKIAIIVNT 231 (358)
T ss_pred cCCCEEEEecCchHHHHHHHhcCCCcccccCCCCc-c-ccccccccceeeccccccCHHHHHHHHHHhhCCCeEEEEECC
Confidence 47899999999997777776655433221111111 0 000112222222 2234555666666543 46799999999
Q ss_pred cHHHHHHHHHHHhCCC--cEEEEeCCCCHHHHHHH----HHHHhcCCCceEEEEecChh
Q psy1548 364 VTRCIALSTLLSEQNF--PAVSIHRGMTQEERLKK----YQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 364 ~~~a~~l~~~L~~~g~--~~~~lh~~~~~~eR~~~----l~~F~~g~~g~~I~~~t~~~ 416 (448)
+++|+.+++.|++.+. .+..+||+|++.+|.++ ++.|++|+ ..|.++|+.-
T Consensus 232 ~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~~--~~ilvaT~~~ 288 (358)
T TIGR01587 232 VDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKNE--KFVIVATQVI 288 (358)
T ss_pred HHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCCC--CeEEEECcch
Confidence 9999999999998766 59999999999999764 89999877 4667777643
No 63
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.96 E-value=7.3e-28 Score=251.87 Aligned_cols=302 Identities=17% Similarity=0.200 Sum_probs=205.4
Q ss_pred CCHHHHHHHhhcccee-EeeccccCCcccccceeEeeccCCCCc---------hhhhhhhccccccceeeeeCcceeeec
Q psy1548 87 LKPEILRAIVDCWRIL-VATNLFGRGMDIERVNIVFNYDMPEDS---------DTYLHRVARAGRFGTKAVLGMDILCQA 156 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~~v~~~~~p~~~---------~~yQ~~~~~~~~~~~~~~~g~~vli~a 156 (448)
++..+++++.+.|..+ +-++-.+.-.+...+ |..|.|. ...|++ +++.+++|++++++|
T Consensus 118 ~~~~~~~g~~~~~n~~~~~~~~~~~~~~~~~~-----~~n~~~~~~~~l~~~~~~iQ~q------il~~i~~gkdvIv~A 186 (675)
T PHA02653 118 FDEYILRGLVEGGNALGIFSNNVGSKKDTIGI-----LGNPEPFSKIPLASLQPDVQLK------IFEAWISRKPVVLTG 186 (675)
T ss_pred ccHHHHhhHhhcCceeeeeccCcccccccccc-----cCCCCccccccCCchhHHHHHH------HHHHHHhCCCEEEEC
Confidence 4578888888776322 333333322211111 2222221 234788 999999999999999
Q ss_pred cCCChhHHH---------HHHHHHHhhh---ccCCCeEEEEeeccHHHHHHHHHHHHHhhcc--CCCceEEEEEcCcccH
Q psy1548 157 KSGMGKTAV---------FVLATLQQLE---TTDSNVYVLVMCHTRELAFQISKEYERFSKY--MSNIKVGVFFGGLPIQ 222 (448)
Q Consensus 157 pTGsGKT~~---------~~l~~l~~l~---~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~--~~~~~v~~~~g~~~~~ 222 (448)
+||||||.+ |++|.+..+. ....+.++++++|+++||.|+...+.+..++ .++..+.+.+|+.+.
T Consensus 187 ~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~vg~~~~~g~~v~v~~Gg~~~- 265 (675)
T PHA02653 187 GTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKSLGFDEIDGSPISLKYGSIPD- 265 (675)
T ss_pred CCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHHhCccccCCceEEEEECCcch-
Confidence 999999987 4455555442 2334568999999999999999988876654 236778888999862
Q ss_pred HhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCcc
Q psy1548 223 KDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKE 301 (448)
Q Consensus 223 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~ 301 (448)
........ ..+|+|+|++. ....+++++++|+||||.+... + +.+..+++..+ ..+|+++||||++.+
T Consensus 266 ~~~~t~~k-~~~Ilv~T~~L-------~l~~L~~v~~VVIDEaHEr~~~-~--DllL~llk~~~~~~rq~ILmSATl~~d 334 (675)
T PHA02653 266 ELINTNPK-PYGLVFSTHKL-------TLNKLFDYGTVIIDEVHEHDQI-G--DIIIAVARKHIDKIRSLFLMTATLEDD 334 (675)
T ss_pred HHhhcccC-CCCEEEEeCcc-------cccccccCCEEEccccccCccc-h--hHHHHHHHHhhhhcCEEEEEccCCcHh
Confidence 22122222 37899999752 1124788999999999998664 2 44555555443 345999999999988
Q ss_pred HHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcC----------cchHHHHHHHHHhh--CCCCeEEEEECccHHHHH
Q psy1548 302 IRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK----------ENEKNKKLFELLDV--LEFNQVVIFVKSVTRCIA 369 (448)
Q Consensus 302 ~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~----------~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~ 369 (448)
+..+ ..++.+|..+.+... +...++++|.... ...+...+..+... ..++++||||+++.+|+.
T Consensus 335 v~~l-~~~~~~p~~I~I~gr---t~~pV~~~yi~~~~~~~~~~~y~~~~k~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~ 410 (675)
T PHA02653 335 RDRI-KEFFPNPAFVHIPGG---TLFPISEVYVKNKYNPKNKRAYIEEEKKNIVTALKKYTPPKGSSGIVFVASVSQCEE 410 (675)
T ss_pred HHHH-HHHhcCCcEEEeCCC---cCCCeEEEEeecCcccccchhhhHHHHHHHHHHHHHhhcccCCcEEEEECcHHHHHH
Confidence 8776 578888888876432 3456777776433 12233333333322 235689999999999999
Q ss_pred HHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHH-hcCCCceEEEEecChhhHH
Q psy1548 370 LSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEF-KDFHKGLAITFASDENDAK 419 (448)
Q Consensus 370 l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F-~~g~~g~~I~~~t~~~d~~ 419 (448)
+++.|++. ++.+..+||+|++. .+++++| ++|+ ..|.++|+-.+.+
T Consensus 411 l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~~gk--~kILVATdIAERG 459 (675)
T PHA02653 411 YKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYSSKN--PSIIISTPYLESS 459 (675)
T ss_pred HHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhccCc--eeEEeccChhhcc
Confidence 99999987 79999999999985 5677887 5655 4677777754443
No 64
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=2.8e-27 Score=233.90 Aligned_cols=291 Identities=15% Similarity=0.111 Sum_probs=195.2
Q ss_pred hhhhhccccccceeeeeCcc--eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC--
Q psy1548 132 YLHRVARAGRFGTKAVLGMD--ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-- 207 (448)
Q Consensus 132 yQ~~~~~~~~~~~~~~~g~~--vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-- 207 (448)
+|.+ +++.+..+.+ +++.+|||||||.+|++|++.. ..++++++|+++|++|+++.++.+...+
T Consensus 1 hQ~~------~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~~------~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~ 68 (357)
T TIGR03158 1 HQVA------TFEALQSKDADIIFNTAPTGAGKTLAWLTPLLHG------ENDTIALYPTNALIEDQTEAIKEFVDVFKP 68 (357)
T ss_pred CHHH------HHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHHc------CCCEEEEeChHHHHHHHHHHHHHHHHhcCC
Confidence 4888 8999998874 7899999999999999999852 2368999999999999999999887543
Q ss_pred -CCceEEEEEcCcccHHh-------------------HHHHhcCCCcEEEEcHHHHHHHHHCC----C-C---cCCCeeE
Q psy1548 208 -SNIKVGVFFGGLPIQKD-------------------EEYLKTHNPQIVVGTPGRILALVRNK----K-L---NLSLLKH 259 (448)
Q Consensus 208 -~~~~v~~~~g~~~~~~~-------------------~~~l~~~~~~IlV~Tp~~l~~~l~~~----~-~---~~~~i~~ 259 (448)
.+..+..+.|....... ........++|+++||+.+..+++.. . . .+.++++
T Consensus 69 ~~~~~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~ 148 (357)
T TIGR03158 69 ERDVNLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFST 148 (357)
T ss_pred CCCceEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCE
Confidence 14556666665322100 01112235899999999998776531 1 1 2478999
Q ss_pred EEecchhHHHhhh----hhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHh--cCCCeEEEEcCcc-----------
Q psy1548 260 FILDECDKMLEQL----EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF--MHDPMEVYVDDEA----------- 322 (448)
Q Consensus 260 lViDEah~l~~~~----~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~--l~~~~~i~~~~~~----------- 322 (448)
+|+||+|.+..+. -+.-....+++......+++++|||+++.+...+... +..|.........
T Consensus 149 iV~DE~H~~~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~ 228 (357)
T TIGR03158 149 VIFDEFHLYDAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDPALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEAD 228 (357)
T ss_pred EEEecccccCcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCHHHHHHHHhccccCceeeeecCcccccCCChhhhcc
Confidence 9999999875430 1112333444444445799999999998877777664 4444433222200
Q ss_pred ------cccccceeEEEEEcCcchHHHHHHHHHh-------hCCCCeEEEEECccHHHHHHHHHHHhCC--CcEEEEeCC
Q psy1548 323 ------KLTLHGLQQHYVKLKENEKNKKLFELLD-------VLEFNQVVIFVKSVTRCIALSTLLSEQN--FPAVSIHRG 387 (448)
Q Consensus 323 ------~~~~~~i~~~~~~~~~~~k~~~L~~ll~-------~~~~~~~IIF~~s~~~a~~l~~~L~~~g--~~~~~lh~~ 387 (448)
....+.+.+.+.. ....|...+..+++ ...++++||||||++.|+.++..|++.| +.+..+||.
T Consensus 229 ~~~~~~~~~~~~i~~~~~~-~~~~~~~~l~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~~~~~~~~~~l~g~ 307 (357)
T TIGR03158 229 NKTQSFRPVLPPVELELIP-APDFKEEELSELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQQGLGDDIGRITGF 307 (357)
T ss_pred ccccccceeccceEEEEEe-CCchhHHHHHHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhhhCCCceEEeeecC
Confidence 0111355555554 33344443333222 2356799999999999999999999864 578899999
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 388 MTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 388 ~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++.+|.++. ...|.++|+--++++ +|... .+ +.+ |.+.+.+.++.||
T Consensus 308 ~~~~~R~~~~--------~~~iLVaTdv~~rGi--Di~~~-~v-i~~-p~~~~~yiqR~GR 355 (357)
T TIGR03158 308 APKKDRERAM--------QFDILLGTSTVDVGV--DFKRD-WL-IFS-ARDAAAFWQRLGR 355 (357)
T ss_pred CCHHHHHHhc--------cCCEEEEecHHhccc--CCCCc-eE-EEC-CCCHHHHhhhccc
Confidence 9999997653 247888887544443 33322 12 233 7778888899998
No 65
>PHA02558 uvsW UvsW helicase; Provisional
Probab=99.96 E-value=4.8e-27 Score=242.40 Aligned_cols=292 Identities=15% Similarity=0.121 Sum_probs=188.2
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
..++||++ +++.++.+++.++++|||+|||+++...+...+. ....++||++||++|+.|+.+.++++....
T Consensus 114 ~~r~~Q~~------av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~--~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~ 185 (501)
T PHA02558 114 EPHWYQYD------AVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE--NYEGKVLIIVPTTSLVTQMIDDFVDYRLFP 185 (501)
T ss_pred CCCHHHHH------HHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECcHHHHHHHHHHHHHhcccc
Confidence 45666999 9999999999999999999999976543222222 233489999999999999999999987543
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
...+..+.+|.... ...+|+|+||+++.+... ..+++++++|+||||++... . +..++..+++
T Consensus 186 -~~~~~~i~~g~~~~--------~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~----~~~il~~~~~ 248 (501)
T PHA02558 186 -REAMHKIYSGTAKD--------TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-S----LTSIITKLDN 248 (501)
T ss_pred -ccceeEEecCcccC--------CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-h----HHHHHHhhhc
Confidence 45565666665422 136899999999876432 24678999999999988664 3 4566677777
Q ss_pred CCeEEEEeccCCccHHHHHH-HhcCCCeEEEEcCcc-----cccccceeEEE---------------------EEcCcch
Q psy1548 288 TKQVMMFSATLSKEIRPVCK-KFMHDPMEVYVDDEA-----KLTLHGLQQHY---------------------VKLKENE 340 (448)
Q Consensus 288 ~~q~i~~SAT~~~~~~~~~~-~~l~~~~~i~~~~~~-----~~~~~~i~~~~---------------------~~~~~~~ 340 (448)
..++++||||+++....... ..+-.|....+.... ......+.... .......
T Consensus 249 ~~~~lGLTATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 328 (501)
T PHA02558 249 CKFKFGLTGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLKGEDYQEEIKYITSHTK 328 (501)
T ss_pred cceEEEEeccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhcccchHHHHHHHhccHH
Confidence 78999999998654221111 001112222211100 00000000000 0112223
Q ss_pred HHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC-hhh
Q psy1548 341 KNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD-END 417 (448)
Q Consensus 341 k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~-~~d 417 (448)
+...+..++... .+.+++|||++.++|+.+++.|++.|.++..+||+|++++|..+++.|++|+. .++++|. --.
T Consensus 329 Rn~~I~~~~~~~~~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~~~--~vLvaT~~~l~ 406 (501)
T PHA02558 329 RNKWIANLALKLAKKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGGKG--IIIVASYGVFS 406 (501)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCCCC--eEEEEEcceec
Confidence 444444444332 35689999999999999999999999999999999999999999999998763 4555552 111
Q ss_pred HHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 418 AKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 418 ~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++. ++.+.-.+-+...|.+...+.|+.||
T Consensus 407 eG~--Dip~ld~vIl~~p~~s~~~~~QriGR 435 (501)
T PHA02558 407 TGI--SIKNLHHVIFAHPSKSKIIVLQSIGR 435 (501)
T ss_pred ccc--ccccccEEEEecCCcchhhhhhhhhc
Confidence 111 22222222223334445556677776
No 66
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.95 E-value=4e-27 Score=252.34 Aligned_cols=255 Identities=16% Similarity=0.201 Sum_probs=191.0
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh-hccCCCceEEEEEcCcc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF-SKYMSNIKVGVFFGGLP 220 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~-~~~~~~~~v~~~~g~~~ 220 (448)
.+..+.++++++++||||||||.+|.+++++.... ..+++++.|+|++|.|+.+.+... .... +..++..+++..
T Consensus 13 i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~~~~~---~~~ilvlqPrR~aA~qia~rva~~l~~~~-g~~VGy~vr~~~ 88 (812)
T PRK11664 13 LLTALKTAPQVLLKAPTGAGKSTWLPLQLLQHGGI---NGKIIMLEPRRLAARNVAQRLAEQLGEKP-GETVGYRMRAES 88 (812)
T ss_pred HHHHHHhCCCEEEEcCCCCCHHHHHHHHHHHcCCc---CCeEEEECChHHHHHHHHHHHHHHhCccc-CceEEEEecCcc
Confidence 45566678999999999999999999999976422 248999999999999999988654 3333 677777776653
Q ss_pred cHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhH-HHhhhhh-HHHHHHHHHhCCCCCeEEEEeccC
Q psy1548 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK-MLEQLEM-RRDVQEIFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 221 ~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~~~-~~~~~~i~~~l~~~~q~i~~SAT~ 298 (448)
... . ..+|+|+||+++++++..+ ..++++++|||||+|. .++. ++ ...+..+++.++++.|+++||||+
T Consensus 89 ~~~------~-~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~-Dl~L~ll~~i~~~lr~~lqlilmSATl 159 (812)
T PRK11664 89 KVG------P-NTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQA-DLALALLLDVQQGLRDDLKLLIMSATL 159 (812)
T ss_pred ccC------C-CCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCcccccc-chHHHHHHHHHHhCCccceEEEEecCC
Confidence 221 1 2689999999999988764 4689999999999996 3332 22 223445667778889999999999
Q ss_pred CccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHH-----HHHHHHhhCCCCeEEEEECccHHHHHHHHH
Q psy1548 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNK-----KLFELLDVLEFNQVVIFVKSVTRCIALSTL 373 (448)
Q Consensus 299 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~-----~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~ 373 (448)
+.+ . ...++.++..+..... ...++++|..++..++.. .+..++.. ..+++||||++..+++.+++.
T Consensus 160 ~~~--~-l~~~~~~~~~I~~~gr----~~pV~~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~ei~~l~~~ 231 (812)
T PRK11664 160 DND--R-LQQLLPDAPVIVSEGR----SFPVERRYQPLPAHQRFDEAVARATAELLRQ-ESGSLLLFLPGVGEIQRVQEQ 231 (812)
T ss_pred CHH--H-HHHhcCCCCEEEecCc----cccceEEeccCchhhhHHHHHHHHHHHHHHh-CCCCEEEEcCCHHHHHHHHHH
Confidence 865 2 3466666555544322 234677777666555543 34444443 357899999999999999999
Q ss_pred HHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHH
Q psy1548 374 LSE---QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAK 419 (448)
Q Consensus 374 L~~---~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~ 419 (448)
|++ .++.+..+||+|++++|.++++.|++|+ ..|.++|+-.+.+
T Consensus 232 L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G~--rkVlvATnIAErs 278 (812)
T PRK11664 232 LASRVASDVLLCPLYGALSLAEQQKAILPAPAGR--RKVVLATNIAETS 278 (812)
T ss_pred HHHhccCCceEEEeeCCCCHHHHHHHhccccCCC--eEEEEecchHHhc
Confidence 987 5788999999999999999999999887 5788888754443
No 67
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.95 E-value=6.7e-27 Score=250.14 Aligned_cols=255 Identities=14% Similarity=0.180 Sum_probs=190.2
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh-ccCCCceEEEEEcCcc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS-KYMSNIKVGVFFGGLP 220 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~~~~v~~~~g~~~ 220 (448)
.+..+..+.+++++|+||||||.+|.+++++... .+.+++++.|+|++|.|+.+.+.... ... +..++...++..
T Consensus 10 i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~~~---~~~~ilvlqPrR~aA~qiA~rva~~~~~~~-g~~VGy~vr~~~ 85 (819)
T TIGR01970 10 LRDALAAHPQVVLEAPPGAGKSTAVPLALLDAPG---IGGKIIMLEPRRLAARSAAQRLASQLGEAV-GQTVGYRVRGEN 85 (819)
T ss_pred HHHHHHcCCcEEEECCCCCCHHHHHHHHHHHhhc---cCCeEEEEeCcHHHHHHHHHHHHHHhCCCc-CcEEEEEEcccc
Confidence 4555667889999999999999999999998752 24589999999999999999885443 333 566666655432
Q ss_pred cHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhH-HHhhhhhHH-HHHHHHHhCCCCCeEEEEeccC
Q psy1548 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK-MLEQLEMRR-DVQEIFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 221 ~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~~~~~-~~~~i~~~l~~~~q~i~~SAT~ 298 (448)
. ... ..+|+|+||++|++++..+ ..++++++|||||+|. +++. ++.- .+..+...++++.|+++||||+
T Consensus 86 ~------~s~-~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~-Dl~L~ll~~i~~~lr~dlqlIlmSATl 156 (819)
T TIGR01970 86 K------VSR-RTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDA-DLGLALALDVQSSLREDLKILAMSATL 156 (819)
T ss_pred c------cCC-CCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhcc-chHHHHHHHHHHhcCCCceEEEEeCCC
Confidence 1 112 3789999999999998764 4689999999999994 6664 5433 3345566678889999999999
Q ss_pred CccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHH-----HHHHHHHhhCCCCeEEEEECccHHHHHHHHH
Q psy1548 299 SKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKN-----KKLFELLDVLEFNQVVIFVKSVTRCIALSTL 373 (448)
Q Consensus 299 ~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~-----~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~ 373 (448)
+... ...++.++..+.+... ...++++|......++. ..+..++.. ..+++||||++..+++.+++.
T Consensus 157 ~~~~---l~~~l~~~~vI~~~gr----~~pVe~~y~~~~~~~~~~~~v~~~l~~~l~~-~~g~iLVFlpg~~eI~~l~~~ 228 (819)
T TIGR01970 157 DGER---LSSLLPDAPVVESEGR----SFPVEIRYLPLRGDQRLEDAVSRAVEHALAS-ETGSILVFLPGQAEIRRVQEQ 228 (819)
T ss_pred CHHH---HHHHcCCCcEEEecCc----ceeeeeEEeecchhhhHHHHHHHHHHHHHHh-cCCcEEEEECCHHHHHHHHHH
Confidence 8653 3566666555554332 23466777666554442 233444443 357899999999999999999
Q ss_pred HHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHH
Q psy1548 374 LSE---QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAK 419 (448)
Q Consensus 374 L~~---~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~ 419 (448)
|++ .++.+..+||+|++++|.++++.|++|+ ..|.++|+-.+.+
T Consensus 229 L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G~--rkVlVATnIAErg 275 (819)
T TIGR01970 229 LAERLDSDVLICPLYGELSLAAQDRAIKPDPQGR--RKVVLATNIAETS 275 (819)
T ss_pred HHhhcCCCcEEEEecCCCCHHHHHHHHhhcccCC--eEEEEecchHhhc
Confidence 987 4789999999999999999999999987 4677777754433
No 68
>KOG0952|consensus
Probab=99.95 E-value=1.1e-26 Score=240.76 Aligned_cols=265 Identities=22% Similarity=0.308 Sum_probs=200.3
Q ss_pred EeeccCCCCchhhhhhhccccccceeeee-CcceeeeccCCChhHHHHHHHHHHhhhc-------cCCCeEEEEeeccHH
Q psy1548 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLET-------TDSNVYVLVMCHTRE 191 (448)
Q Consensus 120 v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~-g~~vli~apTGsGKT~~~~l~~l~~l~~-------~~~~~~~lil~Pt~~ 191 (448)
+++|...+.+ |.+ ++|.+.. ..|+||+||||+|||..|++.+|..+.. .++..+++||+|+++
T Consensus 105 ~f~f~~fN~i---QS~------vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKA 175 (1230)
T KOG0952|consen 105 FFSFEEFNRI---QSE------VFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKA 175 (1230)
T ss_pred cccHHHHHHH---HHH------hhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHH
Confidence 4567788888 999 9998876 5799999999999999999999998864 235679999999999
Q ss_pred HHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC---CcCCCeeEEEecchhHH
Q psy1548 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK---LNLSLLKHFILDECDKM 268 (448)
Q Consensus 192 L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~---~~~~~i~~lViDEah~l 268 (448)
||.++.+.+.+=...+ +++|..++|++...... ... ++|+|+||+++--..++.. -.++.++++||||+|.+
T Consensus 176 La~Em~~~~~kkl~~~-gi~v~ELTGD~ql~~te--i~~--tqiiVTTPEKwDvvTRk~~~d~~l~~~V~LviIDEVHlL 250 (1230)
T KOG0952|consen 176 LAAEMVDKFSKKLAPL-GISVRELTGDTQLTKTE--IAD--TQIIVTTPEKWDVVTRKSVGDSALFSLVRLVIIDEVHLL 250 (1230)
T ss_pred HHHHHHHHHhhhcccc-cceEEEecCcchhhHHH--HHh--cCEEEecccceeeeeeeeccchhhhhheeeEEeeeehhh
Confidence 9999776665544444 89999999998766544 332 7999999999754443322 23578999999999977
Q ss_pred HhhhhhHHHHHHHHHhC-------CCCCeEEEEeccCCccHHHHHHHhcCCCeE-EEEcCcccccccceeEEEEEcCcc-
Q psy1548 269 LEQLEMRRDVQEIFRSS-------PHTKQVMMFSATLSKEIRPVCKKFMHDPME-VYVDDEAKLTLHGLQQHYVKLKEN- 339 (448)
Q Consensus 269 ~~~~~~~~~~~~i~~~l-------~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~-i~~~~~~~~~~~~i~~~~~~~~~~- 339 (448)
.+ ..++.++.|+.++ ....+++++|||+|+- .+++.++-.+|.. +...+. ...+..+.+.++..+..
T Consensus 251 hd--~RGpvlEtiVaRtlr~vessqs~IRivgLSATlPN~-eDvA~fL~vn~~~glfsFd~-~yRPvpL~~~~iG~k~~~ 326 (1230)
T KOG0952|consen 251 HD--DRGPVLETIVARTLRLVESSQSMIRIVGLSATLPNY-EDVARFLRVNPYAGLFSFDQ-RYRPVPLTQGFIGIKGKK 326 (1230)
T ss_pred cC--cccchHHHHHHHHHHHHHhhhhheEEEEeeccCCCH-HHHHHHhcCCCccceeeecc-cccccceeeeEEeeeccc
Confidence 66 6777787776554 3466899999999865 5666666555433 333333 45667778877776654
Q ss_pred --h--------HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC----C-------------------CcEEEEeC
Q psy1548 340 --E--------KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ----N-------------------FPAVSIHR 386 (448)
Q Consensus 340 --~--------k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~----g-------------------~~~~~lh~ 386 (448)
. ..+.+.+.+. .+.+++|||.+++.+...|+.|.+. | .....+|+
T Consensus 327 ~~~~~~~~d~~~~~kv~e~~~--~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~~iHhA 404 (1230)
T KOG0952|consen 327 NRQQKKNIDEVCYDKVVEFLQ--EGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGMGIHHA 404 (1230)
T ss_pred chhhhhhHHHHHHHHHHHHHH--cCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhhhhccc
Confidence 1 1222333333 4679999999999999999998652 1 12678999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy1548 387 GMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~ 404 (448)
||...+|..+...|+.|.
T Consensus 405 Gm~r~DR~l~E~~F~~G~ 422 (1230)
T KOG0952|consen 405 GMLRSDRQLVEKEFKEGH 422 (1230)
T ss_pred ccchhhHHHHHHHHhcCC
Confidence 999999999999999998
No 69
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.1e-26 Score=219.40 Aligned_cols=160 Identities=17% Similarity=0.253 Sum_probs=134.1
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
..+.||.. ....++.+ |.||+.|||.|||+.+++-+...+.+.++ ++|+++||+.|+.|..+.|+++.+..
T Consensus 15 e~R~YQ~~------i~a~al~~-NtLvvlPTGLGKT~IA~~V~~~~l~~~~~--kvlfLAPTKPLV~Qh~~~~~~v~~ip 85 (542)
T COG1111 15 EPRLYQLN------IAAKALFK-NTLVVLPTGLGKTFIAAMVIANRLRWFGG--KVLFLAPTKPLVLQHAEFCRKVTGIP 85 (542)
T ss_pred cHHHHHHH------HHHHHhhc-CeEEEecCCccHHHHHHHHHHHHHHhcCC--eEEEecCCchHHHHHHHHHHHHhCCC
Confidence 44888998 55555544 99999999999999999999888877654 89999999999999999999998765
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
.-.+..++|..+..+....+.+ .+|+|+||+.+.+-+..+.+++.++.++|+||||+-.+. ..+..+.+......+
T Consensus 86 -~~~i~~ltGev~p~~R~~~w~~--~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGn-yAYv~Va~~y~~~~k 161 (542)
T COG1111 86 -EDEIAALTGEVRPEEREELWAK--KKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGN-YAYVFVAKEYLRSAK 161 (542)
T ss_pred -hhheeeecCCCChHHHHHHHhh--CCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCc-chHHHHHHHHHHhcc
Confidence 6788999999987766665555 589999999999999999999999999999999998887 555555555555567
Q ss_pred CCeEEEEeccCCc
Q psy1548 288 TKQVMMFSATLSK 300 (448)
Q Consensus 288 ~~q~i~~SAT~~~ 300 (448)
++.++++|||...
T Consensus 162 ~~~ilgLTASPGs 174 (542)
T COG1111 162 NPLILGLTASPGS 174 (542)
T ss_pred CceEEEEecCCCC
Confidence 7789999999644
No 70
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.94 E-value=6.6e-26 Score=200.79 Aligned_cols=165 Identities=27% Similarity=0.465 Sum_probs=140.9
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
++|++ +++.+..|+++++.+|||+|||++|++|+++.+... ...++++++|+++|+.|+.+.+..+.... ++
T Consensus 2 ~~Q~~------~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~~~~-~~~~~lii~P~~~l~~q~~~~~~~~~~~~-~~ 73 (169)
T PF00270_consen 2 PLQQE------AIEAIISGKNVLISAPTGSGKTLAYILPALNRLQEG-KDARVLIIVPTRALAEQQFERLRKFFSNT-NV 73 (169)
T ss_dssp HHHHH------HHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHHHTT-SSSEEEEEESSHHHHHHHHHHHHHHTTTT-TS
T ss_pred HHHHH------HHHHHHcCCCEEEECCCCCccHHHHHHHHHhhhccC-CCceEEEEeeccccccccccccccccccc-cc
Confidence 35999 999999999999999999999999999999988776 44599999999999999999999998875 78
Q ss_pred eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC--CC
Q psy1548 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP--HT 288 (448)
Q Consensus 211 ~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~--~~ 288 (448)
++..++|+............+.++|+|+||+++.+++.....++.+++++|+||+|.+..+ .+...+..++..+. .+
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~~~~~~ 152 (169)
T PF00270_consen 74 RVVLLHGGQSISEDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRLKRFKN 152 (169)
T ss_dssp SEEEESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHSHTTTT
T ss_pred ccccccccccccccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHhcCCCC
Confidence 9999999887553333222434899999999999999986667788999999999999997 88888999888873 36
Q ss_pred CeEEEEeccCCccHHH
Q psy1548 289 KQVMMFSATLSKEIRP 304 (448)
Q Consensus 289 ~q~i~~SAT~~~~~~~ 304 (448)
.|++++|||+++.+++
T Consensus 153 ~~~i~~SAT~~~~~~~ 168 (169)
T PF00270_consen 153 IQIILLSATLPSNVEK 168 (169)
T ss_dssp SEEEEEESSSTHHHHH
T ss_pred CcEEEEeeCCChhHhh
Confidence 8999999999966554
No 71
>PRK13766 Hef nuclease; Provisional
Probab=99.93 E-value=1.3e-24 Score=236.52 Aligned_cols=272 Identities=21% Similarity=0.305 Sum_probs=191.4
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
.++||++ +...++.+ |+++++|||+|||+++++++...+. ..+.++|||+||++|+.|+.+.++.+....
T Consensus 16 ~r~yQ~~------~~~~~l~~-n~lv~~ptG~GKT~~a~~~i~~~l~--~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~- 85 (773)
T PRK13766 16 ARLYQQL------LAATALKK-NTLVVLPTGLGKTAIALLVIAERLH--KKGGKVLILAPTKPLVEQHAEFFRKFLNIP- 85 (773)
T ss_pred ccHHHHH------HHHHHhcC-CeEEEcCCCccHHHHHHHHHHHHHH--hCCCeEEEEeCcHHHHHHHHHHHHHHhCCC-
Confidence 4788999 77666666 9999999999999999999888763 234589999999999999999999887543
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCC
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~ 288 (448)
+.++..++|+.+..... .+... .+|+|+||+.+...+..+.+.+.+++++|+||||++... .....+...+....+.
T Consensus 86 ~~~v~~~~g~~~~~~r~-~~~~~-~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~-~~~~~i~~~~~~~~~~ 162 (773)
T PRK13766 86 EEKIVVFTGEVSPEKRA-ELWEK-AKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGN-YAYVYIAERYHEDAKN 162 (773)
T ss_pred CceEEEEeCCCCHHHHH-HHHhC-CCEEEECHHHHHHHHHcCCCChhhCcEEEEECCcccccc-ccHHHHHHHHHhcCCC
Confidence 45788888887655433 33333 689999999998888888888899999999999998765 3334444445455556
Q ss_pred CeEEEEeccCCcc---HHHHHHHhcCCCeEEEEcCc--------------------cc----------------------
Q psy1548 289 KQVMMFSATLSKE---IRPVCKKFMHDPMEVYVDDE--------------------AK---------------------- 323 (448)
Q Consensus 289 ~q~i~~SAT~~~~---~~~~~~~~l~~~~~i~~~~~--------------------~~---------------------- 323 (448)
.++++||||+... +..++..+......+..... ..
T Consensus 163 ~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l~~~ 242 (773)
T PRK13766 163 PLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKLKEL 242 (773)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 7899999997433 22223332211111000000 00
Q ss_pred -cc--cc-------------ceeEE-------------------------------------------------------
Q psy1548 324 -LT--LH-------------GLQQH------------------------------------------------------- 332 (448)
Q Consensus 324 -~~--~~-------------~i~~~------------------------------------------------------- 332 (448)
.. .. .+...
T Consensus 243 ~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~~~~ 322 (773)
T PRK13766 243 GVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGGSKA 322 (773)
T ss_pred CCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCCcHH
Confidence 00 00 00000
Q ss_pred -----------------EEEcCcchHHHHHHHHHhh----CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCC----
Q psy1548 333 -----------------YVKLKENEKNKKLFELLDV----LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG---- 387 (448)
Q Consensus 333 -----------------~~~~~~~~k~~~L~~ll~~----~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~---- 387 (448)
........|...|.++++. ..++++||||+++..|+.|++.|...|+++..+||.
T Consensus 323 ~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~~~~ 402 (773)
T PRK13766 323 SKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQASKD 402 (773)
T ss_pred HHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEcccccc
Confidence 0001112356666666644 456799999999999999999999999999999986
Q ss_pred ----CCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 388 ----MTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 388 ----~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
|++.+|.++++.|++|+ ..++++|+.
T Consensus 403 ~~~~~~~~~r~~~~~~F~~g~--~~vLvaT~~ 432 (773)
T PRK13766 403 GDKGMSQKEQIEILDKFRAGE--FNVLVSTSV 432 (773)
T ss_pred ccCCCCHHHHHHHHHHHHcCC--CCEEEECCh
Confidence 99999999999999987 456666654
No 72
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=7.5e-25 Score=226.06 Aligned_cols=300 Identities=19% Similarity=0.169 Sum_probs=216.2
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
-.|+++ |.. ++|.++.|+ |+.+.||+|||++|.+|++..... +..++|++||++||.|.++.+..+
T Consensus 102 ~~p~~V---Q~~------~~~~ll~G~--Iae~~TGeGKTla~~lp~~~~al~---G~~v~VvTptreLA~qdae~~~~l 167 (656)
T PRK12898 102 QRHFDV---QLM------GGLALLSGR--LAEMQTGEGKTLTATLPAGTAALA---GLPVHVITVNDYLAERDAELMRPL 167 (656)
T ss_pred CCCChH---HHH------HHHHHhCCC--eeeeeCCCCcHHHHHHHHHHHhhc---CCeEEEEcCcHHHHHHHHHHHHHH
Confidence 378899 999 999999999 999999999999999999987543 458999999999999999999999
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCCC-------------------------CcCCCe
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNKK-------------------------LNLSLL 257 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~~-------------------------~~~~~i 257 (448)
...+ ++++++++|+.+.. ...... .++|+|||...+ .++|+.+. .-...+
T Consensus 168 ~~~l-Glsv~~i~gg~~~~--~r~~~y-~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~ 243 (656)
T PRK12898 168 YEAL-GLTVGCVVEDQSPD--ERRAAY-GADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGL 243 (656)
T ss_pred Hhhc-CCEEEEEeCCCCHH--HHHHHc-CCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhccccc
Confidence 9988 99999999997633 333333 389999999887 44443321 113557
Q ss_pred eEEEecchhHHHhh--------------h---hhHHHHHHHHHhC--------------------------------C--
Q psy1548 258 KHFILDECDKMLEQ--------------L---EMRRDVQEIFRSS--------------------------------P-- 286 (448)
Q Consensus 258 ~~lViDEah~l~~~--------------~---~~~~~~~~i~~~l--------------------------------~-- 286 (448)
.+.|+||+|.++=+ . .+......+.+.+ +
T Consensus 244 ~~aIvDEvDSiLiDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~~~~e~~~~~l~~~ 323 (656)
T PRK12898 244 HFAIVDEADSVLIDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGRARIAELAESLPPA 323 (656)
T ss_pred ceeEeecccceeeccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHHHHHHHHhCcchhh
Confidence 78999999965321 0 0100001010000 0
Q ss_pred ----------------------CC--------------------------------------------------------
Q psy1548 287 ----------------------HT-------------------------------------------------------- 288 (448)
Q Consensus 287 ----------------------~~-------------------------------------------------------- 288 (448)
.+
T Consensus 324 ~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~ 403 (656)
T PRK12898 324 WRGAVRREELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQR 403 (656)
T ss_pred cccchHHHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHH
Confidence 00
Q ss_pred -----CeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEE
Q psy1548 289 -----KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFV 361 (448)
Q Consensus 289 -----~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~ 361 (448)
.++.+||||.+....++...|..++..|..... ......+.++.+...+|...|..++... .+.++||||
T Consensus 404 ~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp---~~r~~~~~~v~~t~~~K~~aL~~~i~~~~~~~~pvLIft 480 (656)
T PRK12898 404 FFRRYLRLAGMTGTAREVAGELWSVYGLPVVRIPTNRP---SQRRHLPDEVFLTAAAKWAAVAARVRELHAQGRPVLVGT 480 (656)
T ss_pred HHHhhHHHhcccCcChHHHHHHHHHHCCCeEEeCCCCC---ccceecCCEEEeCHHHHHHHHHHHHHHHHhcCCCEEEEe
Confidence 135799999998888888888888766655443 2233445567777888999999998764 256899999
Q ss_pred CccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHH----HHHHH--HHhcCCCCCC
Q psy1548 362 KSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI----LNNVQ--DRFDVSISEL 435 (448)
Q Consensus 362 ~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~----l~~i~--~~~~~~~~~~ 435 (448)
+|++.++.++..|.+.|+++..+||++.+.+ +.+..|+.++ | .|+++|+-.-+++ ...+. .-+.+-..++
T Consensus 481 ~t~~~se~L~~~L~~~gi~~~~Lhg~~~~rE--~~ii~~ag~~-g-~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~ 556 (656)
T PRK12898 481 RSVAASERLSALLREAGLPHQVLNAKQDAEE--AAIVARAGQR-G-RITVATNMAGRGTDIKLEPGVAARGGLHVILTER 556 (656)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEeeCCcHHHH--HHHHHHcCCC-C-cEEEEccchhcccCcCCccchhhcCCCEEEEcCC
Confidence 9999999999999999999999999966544 4455554333 3 4778877432332 11221 1135777889
Q ss_pred CccccccccccCC
Q psy1548 436 PDEIDLSTYIEGR 448 (448)
Q Consensus 436 p~~~~~~~~~~~~ 448 (448)
|++...+.++.||
T Consensus 557 P~s~r~y~hr~GR 569 (656)
T PRK12898 557 HDSARIDRQLAGR 569 (656)
T ss_pred CCCHHHHHHhccc
Confidence 9998888888887
No 73
>KOG0351|consensus
Probab=99.93 E-value=1.3e-25 Score=239.83 Aligned_cols=294 Identities=15% Similarity=0.101 Sum_probs=210.4
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
++.|++ ++...+.|+|+++.+|||.||++||.+|++-. ++.+|||.|..+|++.+...+... +
T Consensus 266 R~~Q~e------aI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l~------~gitvVISPL~SLm~DQv~~L~~~-----~ 328 (941)
T KOG0351|consen 266 RPNQLE------AINATLSGKDCFVLMPTGGGKSLCYQLPALLL------GGVTVVISPLISLMQDQVTHLSKK-----G 328 (941)
T ss_pred ChhHHH------HHHHHHcCCceEEEeecCCceeeEeecccccc------CCceEEeccHHHHHHHHHHhhhhc-----C
Confidence 344999 99999999999999999999999999998753 338999999999998865555321 7
Q ss_pred ceEEEEEcCcccHHhH---HHHhcC--CCcEEEEcHHHHHHH--HHCCCCcCCC---eeEEEecchhHHHhh-hhhHHHH
Q psy1548 210 IKVGVFFGGLPIQKDE---EYLKTH--NPQIVVGTPGRILAL--VRNKKLNLSL---LKHFILDECDKMLEQ-LEMRRDV 278 (448)
Q Consensus 210 ~~v~~~~g~~~~~~~~---~~l~~~--~~~IlV~Tp~~l~~~--l~~~~~~~~~---i~~lViDEah~l~~~-~~~~~~~ 278 (448)
+....+.++.....+. ..+..+ ..+|++.||+++... +......+.. +.++||||||++..| ++||+.+
T Consensus 329 I~a~~L~s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Y 408 (941)
T KOG0351|consen 329 IPACFLSSIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSY 408 (941)
T ss_pred cceeeccccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHH
Confidence 8888888887765433 234444 579999999998542 1222222333 889999999999999 6799999
Q ss_pred HHHHHhC--CCCCeEEEEeccCCccHHHHHHHhcC--CCeEEEEcCcccccccceeEEEEEcCcchH-HHHHHHHHhhCC
Q psy1548 279 QEIFRSS--PHTKQVMMFSATLSKEIRPVCKKFMH--DPMEVYVDDEAKLTLHGLQQHYVKLKENEK-NKKLFELLDVLE 353 (448)
Q Consensus 279 ~~i~~~l--~~~~q~i~~SAT~~~~~~~~~~~~l~--~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k-~~~L~~ll~~~~ 353 (448)
..+.... .+.+.+|++|||.+..+++.+...+. +|..+.. .....|+...+..-..... ...+...-..++
T Consensus 409 k~l~~l~~~~~~vP~iALTATAT~~v~~DIi~~L~l~~~~~~~~----sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~ 484 (941)
T KOG0351|consen 409 KRLGLLRIRFPGVPFIALTATATERVREDVIRSLGLRNPELFKS----SFNRPNLKYEVSPKTDKDALLDILEESKLRHP 484 (941)
T ss_pred HHHHHHHhhCCCCCeEEeehhccHHHHHHHHHHhCCCCcceecc----cCCCCCceEEEEeccCccchHHHHHHhhhcCC
Confidence 9874433 23478999999999988887666554 5553332 2335666555544432222 333333334456
Q ss_pred CCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCC
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS 433 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~ 433 (448)
...+||||.++..|+.++..|++.|+.+..||+||+..+|..+.+.|..++. -|.++|=. .++.-+-.+.--+...
T Consensus 485 ~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~~~--~VivATVA--FGMGIdK~DVR~ViH~ 560 (941)
T KOG0351|consen 485 DQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSDKI--RVIVATVA--FGMGIDKPDVRFVIHY 560 (941)
T ss_pred CCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcCCC--eEEEEEee--ccCCCCCCceeEEEEC
Confidence 7799999999999999999999999999999999999999999999999983 33333322 1111111222235667
Q ss_pred CCCccccccccccCC
Q psy1548 434 ELPDEIDLSTYIEGR 448 (448)
Q Consensus 434 ~~p~~~~~~~~~~~~ 448 (448)
.+|.+++.+-+=.||
T Consensus 561 ~lPks~E~YYQE~GR 575 (941)
T KOG0351|consen 561 SLPKSFEGYYQEAGR 575 (941)
T ss_pred CCchhHHHHHHhccc
Confidence 778887766554444
No 74
>KOG0354|consensus
Probab=99.92 E-value=1.2e-23 Score=215.82 Aligned_cols=167 Identities=16% Similarity=0.200 Sum_probs=131.0
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|..+.++|+||.+ ....++ |+|+||++|||+|||++++..+++.+++.+. .++++++|++.|+.|+...+..
T Consensus 57 ~p~~~~lR~YQ~e------ivq~AL-gkNtii~lPTG~GKTfIAa~Vm~nh~rw~p~-~KiVF~aP~~pLv~QQ~a~~~~ 128 (746)
T KOG0354|consen 57 YPTNLELRNYQEE------LVQPAL-GKNTIIALPTGSGKTFIAAVIMKNHFEWRPK-GKVVFLAPTRPLVNQQIACFSI 128 (746)
T ss_pred ccCcccccHHHHH------HhHHhh-cCCeEEEeecCCCccchHHHHHHHHHhcCCc-ceEEEeeCCchHHHHHHHHHhh
Confidence 6667778999999 887888 9999999999999999999999999998877 5999999999999998755554
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCc-CCCeeEEEecchhHHHhhhhhHHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLN-LSLLKHFILDECDKMLEQLEMRRDVQEI 281 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~-~~~i~~lViDEah~l~~~~~~~~~~~~i 281 (448)
++. ...+....||.........+.. ..+|+|+||+.+.+.+.++... ++.+.++||||||+-...+.+...+...
T Consensus 129 ~~~---~~~~T~~l~~~~~~~~r~~i~~-s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~ 204 (746)
T KOG0354|consen 129 YLI---PYSVTGQLGDTVPRSNRGEIVA-SKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREY 204 (746)
T ss_pred ccC---cccceeeccCccCCCchhhhhc-ccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHH
Confidence 443 2455555666433333333333 3799999999999999876554 5999999999999988875566666666
Q ss_pred HHhCCCCCeEEEEeccCCcc
Q psy1548 282 FRSSPHTKQVMMFSATLSKE 301 (448)
Q Consensus 282 ~~~l~~~~q~i~~SAT~~~~ 301 (448)
+..-....|++++|||+..+
T Consensus 205 l~~k~~~~qILgLTASpG~~ 224 (746)
T KOG0354|consen 205 LDLKNQGNQILGLTASPGSK 224 (746)
T ss_pred HHhhhccccEEEEecCCCcc
Confidence 66655566999999996553
No 75
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=1.8e-23 Score=220.28 Aligned_cols=298 Identities=16% Similarity=0.156 Sum_probs=205.4
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|+++ |.. +++.+..|+ ++.+.||+|||+++++|++..... +..++|++||+.||.|.++.+..+.
T Consensus 78 ~p~~v---Ql~------~~~~l~~G~--Iaem~TGeGKTL~a~lp~~l~al~---G~~v~VvTpt~~LA~qd~e~~~~l~ 143 (790)
T PRK09200 78 RPYDV---QLI------GALVLHEGN--IAEMQTGEGKTLTATMPLYLNALE---GKGVHLITVNDYLAKRDAEEMGQVY 143 (790)
T ss_pred CCchH---HHH------hHHHHcCCc--eeeecCCCcchHHHHHHHHHHHHc---CCCeEEEeCCHHHHHHHHHHHHHHH
Confidence 78888 999 888888887 999999999999999999855443 4579999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCCC------CcCCCeeEEEecchhHHHhh------
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNKK------LNLSLLKHFILDECDKMLEQ------ 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~~~------ 271 (448)
..+ +++++++.|+.+...+..... .++|+||||+++ .+++.... ..+..+.++|+||||.|+=+
T Consensus 144 ~~l-Gl~v~~i~g~~~~~~~r~~~y--~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiDea~tpl 220 (790)
T PRK09200 144 EFL-GLTVGLNFSDIDDASEKKAIY--EADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLDEAQTPL 220 (790)
T ss_pred hhc-CCeEEEEeCCCCcHHHHHHhc--CCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceeccCCCce
Confidence 998 999999999987433333332 389999999999 55554322 34578899999999977522
Q ss_pred ---------hhhHHHHHHHHHhCCCC--------C---------------------------------------------
Q psy1548 272 ---------LEMRRDVQEIFRSSPHT--------K--------------------------------------------- 289 (448)
Q Consensus 272 ---------~~~~~~~~~i~~~l~~~--------~--------------------------------------------- 289 (448)
.........+...+... .
T Consensus 221 iisg~~~~~~~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~ 300 (790)
T PRK09200 221 IISGKPRVQSNLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFK 300 (790)
T ss_pred eeeCCCccccHHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhh
Confidence 01122222222222110 0
Q ss_pred ----------------------------------------------------------------eEEEEeccCCccHHHH
Q psy1548 290 ----------------------------------------------------------------QVMMFSATLSKEIRPV 305 (448)
Q Consensus 290 ----------------------------------------------------------------q~i~~SAT~~~~~~~~ 305 (448)
++.+||.|......++
T Consensus 301 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~ 380 (790)
T PRK09200 301 RDVDYIVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEF 380 (790)
T ss_pred cCCcEEEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHH
Confidence 2244444443333333
Q ss_pred HHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEE
Q psy1548 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383 (448)
Q Consensus 306 ~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~ 383 (448)
...|.- ++ +.+++. ......-....+.+...+|...+...+... .+.++||||+|++.++.++..|.+.|+++..
T Consensus 381 ~~~Y~l-~v-~~IPt~-kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~ 457 (790)
T PRK09200 381 FEVYNM-EV-VQIPTN-RPIIRIDYPDKVFVTLDEKYKAVIEEVKERHETGRPVLIGTGSIEQSETFSKLLDEAGIPHNL 457 (790)
T ss_pred HHHhCC-cE-EECCCC-CCcccccCCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEE
Confidence 332221 11 111111 110010111234456678999998888653 5679999999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHH---HHH-----hcCCCCCCCccccccccccCC
Q psy1548 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNV---QDR-----FDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 384 lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i---~~~-----~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+||++.+.++..+...++.| .|+++|+-.-+++ +| ... +.+-..++|.+...+.++.||
T Consensus 458 L~~~~~~~e~~~i~~ag~~g----~VlIATdmAgRG~--DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GR 524 (790)
T PRK09200 458 LNAKNAAKEAQIIAEAGQKG----AVTVATNMAGRGT--DIKLGEGVHELGGLAVIGTERMESRRVDLQLRGR 524 (790)
T ss_pred ecCCccHHHHHHHHHcCCCC----eEEEEccchhcCc--CCCcccccccccCcEEEeccCCCCHHHHHHhhcc
Confidence 99999998888777776543 5788877432332 33 122 356677899998888888887
No 76
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=4.9e-23 Score=213.83 Aligned_cols=300 Identities=19% Similarity=0.201 Sum_probs=204.3
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
-.|+++ |.. ..+.+..|+ ++.++||+|||++|.+|++..... +..+.|++||..||.|..+.+..+
T Consensus 55 ~~p~~v---Qli------g~~~l~~G~--Iaem~TGeGKTLva~lpa~l~aL~---G~~V~VvTpt~~LA~qdae~~~~l 120 (745)
T TIGR00963 55 MRPFDV---QLI------GGIALHKGK--IAEMKTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAEWMGQV 120 (745)
T ss_pred CCccch---HHh------hhhhhcCCc--eeeecCCCccHHHHHHHHHHHHHh---CCCEEEEcCCHHHHHHHHHHHHHH
Confidence 368888 999 877777776 999999999999999999533332 336999999999999999999999
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHHhh-----
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKMLEQ----- 271 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~~~----- 271 (448)
...+ ++++++++|+.+...+...+ .++|+||||+++ .++++.+ ...+..+.++|+||+|.|+-+
T Consensus 121 ~~~L-GLsv~~i~g~~~~~~r~~~y---~~dIvyGT~~rlgfDyLrd~~~~~~~~~~~r~l~~aIIDEaDs~LIDeaRtp 196 (745)
T TIGR00963 121 YRFL-GLSVGLILSGMSPEERREAY---ACDITYGTNNELGFDYLRDNMAHSKEEKVQRPFHFAIIDEVDSILIDEARTP 196 (745)
T ss_pred hccC-CCeEEEEeCCCCHHHHHHhc---CCCEEEECCCchhhHHHhcccccchhhhhccccceeEeecHHHHhHHhhhhH
Confidence 9998 89999999998765444333 379999999999 8888765 346788999999999988652
Q ss_pred ---hh-------hHHHHHHHHHhCCC---------C--------------------------------------------
Q psy1548 272 ---LE-------MRRDVQEIFRSSPH---------T-------------------------------------------- 288 (448)
Q Consensus 272 ---~~-------~~~~~~~i~~~l~~---------~-------------------------------------------- 288 (448)
.+ .......+.+.+.. .
T Consensus 197 Liisg~~~~~~~ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~ 276 (745)
T TIGR00963 197 LIISGPAEKSTELYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELF 276 (745)
T ss_pred HhhcCCCCCchHHHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 00 01111111111110 0
Q ss_pred ----------------------------------------------------------------CeEEEEeccCCccHHH
Q psy1548 289 ----------------------------------------------------------------KQVMMFSATLSKEIRP 304 (448)
Q Consensus 289 ----------------------------------------------------------------~q~i~~SAT~~~~~~~ 304 (448)
.++.+||.|...+..+
T Consensus 277 ~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 356 (745)
T TIGR00963 277 EKDVDYIVRDGEVVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEE 356 (745)
T ss_pred hcCCcEEEECCEEEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHH
Confidence 0234455554433333
Q ss_pred HHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 305 ~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
+...|.-+-+. +++........ ....+.....+|..++...+.. ..+.++||||+|.+.++.++..|.+.|++..
T Consensus 357 ~~~iY~l~vv~--IPtnkp~~R~d-~~d~i~~t~~~k~~ai~~~i~~~~~~grpvLV~t~si~~se~ls~~L~~~gi~~~ 433 (745)
T TIGR00963 357 FEKIYNLEVVV--VPTNRPVIRKD-LSDLVYKTEEEKWKAVVDEIKERHAKGQPVLVGTTSVEKSELLSNLLKERGIPHN 433 (745)
T ss_pred HHHHhCCCEEE--eCCCCCeeeee-CCCeEEcCHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHcCCCeE
Confidence 33333222111 11110000011 1112344556788887776633 3567999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHH---HHHHHH--HhcCCCCCCCccccccccccCC
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI---LNNVQD--RFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~---l~~i~~--~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.+|++ +.+|...+..|..+. ..|+++|+-.-++. +..+.. -+.+...++|++.....++.||
T Consensus 434 ~Lna~--q~~rEa~ii~~ag~~--g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GR 500 (745)
T TIGR00963 434 VLNAK--NHEREAEIIAQAGRK--GAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGR 500 (745)
T ss_pred EeeCC--hHHHHHHHHHhcCCC--ceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhcc
Confidence 99999 889999999998766 37777776322221 011211 3567777888887777787777
No 77
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.91 E-value=5.2e-23 Score=214.92 Aligned_cols=259 Identities=16% Similarity=0.106 Sum_probs=173.2
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcc-
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP- 220 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~- 220 (448)
..+.+..| .++.++||+|||++|++|++..... +..++|++|+++||.|+.+.+..+...+ ++++++++++..
T Consensus 78 g~l~l~~G--~Iaem~TGeGKTLta~Lpa~l~aL~---g~~V~VVTpn~yLA~Rdae~m~~l~~~L-GLsv~~~~~~s~~ 151 (762)
T TIGR03714 78 GAIVLHQG--NIAEMKTGEGKTLTATMPLYLNALT---GKGAMLVTTNDYLAKRDAEEMGPVYEWL-GLTVSLGVVDDPD 151 (762)
T ss_pred HHHHhcCC--ceeEecCCcchHHHHHHHHHHHhhc---CCceEEeCCCHHHHHHHHHHHHHHHhhc-CCcEEEEECCCCc
Confidence 44444444 7999999999999999998766543 3369999999999999999999999998 999998887632
Q ss_pred --cHHhHHHHhcCCCcEEEEcHHHH-HHHHHC------CCCcCCCeeEEEecchhHHHhh---------------hhhHH
Q psy1548 221 --IQKDEEYLKTHNPQIVVGTPGRI-LALVRN------KKLNLSLLKHFILDECDKMLEQ---------------LEMRR 276 (448)
Q Consensus 221 --~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~------~~~~~~~i~~lViDEah~l~~~---------------~~~~~ 276 (448)
...+...... .++|++|||+++ .+++.. ....+..+.++|+||||.|+-+ .....
T Consensus 152 ~~~~~~~rr~~y-~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~~~~~~~y~ 230 (762)
T TIGR03714 152 EEYDANEKRKIY-NSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAPRVQSNLYH 230 (762)
T ss_pred cccCHHHHHHhC-CCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhccCcCCeeeeCCCccchHHHH
Confidence 2222222223 489999999999 455532 2344678999999999988643 11222
Q ss_pred HHHHHHHhCCCC--------------------------------------------------------------------
Q psy1548 277 DVQEIFRSSPHT-------------------------------------------------------------------- 288 (448)
Q Consensus 277 ~~~~i~~~l~~~-------------------------------------------------------------------- 288 (448)
....+.+.+...
T Consensus 231 ~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~i 310 (762)
T TIGR03714 231 IADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFKRNKDYVVTNGEVVL 310 (762)
T ss_pred HHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHhcCCceEEECCEEEE
Confidence 222222222210
Q ss_pred -------------------------------------------------CeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 289 -------------------------------------------------KQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 289 -------------------------------------------------~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
.++.+||.|...+..++...|.- ++ +.++
T Consensus 311 vD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l-~v-~~IP 388 (762)
T TIGR03714 311 LDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSL-SV-VKIP 388 (762)
T ss_pred EECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCC-CE-EEcC
Confidence 02345555543333444333221 11 1111
Q ss_pred CcccccccceeEEEEEcCcchHHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 320 DEAKLTLHGLQQHYVKLKENEKNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
+. ......-....+.....+|..++...+.. ..+.++||||+|++.++.++..|.+.|+++..+||++.+.+|..+.
T Consensus 389 t~-kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~a~~~~~E~~ii~ 467 (762)
T TIGR03714 389 TN-KPIIRIDYPDKIYATLPEKLMATLEDVKEYHETGQPVLLITGSVEMSEIYSELLLREGIPHNLLNAQNAAKEAQIIA 467 (762)
T ss_pred CC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHhhCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCCChHHHHHHHH
Confidence 11 10000111124556677899999888865 3567999999999999999999999999999999999999987777
Q ss_pred HHHhcCCCceEEEEecC
Q psy1548 398 QEFKDFHKGLAITFASD 414 (448)
Q Consensus 398 ~~F~~g~~g~~I~~~t~ 414 (448)
+.++.| .|+++|+
T Consensus 468 ~ag~~g----~VlIATd 480 (762)
T TIGR03714 468 EAGQKG----AVTVATS 480 (762)
T ss_pred HcCCCC----eEEEEcc
Confidence 666554 4666655
No 78
>KOG0352|consensus
Probab=99.91 E-value=4e-24 Score=202.78 Aligned_cols=264 Identities=13% Similarity=0.165 Sum_probs=188.2
Q ss_pred CCCCchhhhhhhccccccceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
+-+++ |.+ ++..+..+ +||.+++|||+||++||.+|.|.. +..+||+.|..+|..++.+.+.++
T Consensus 20 FKs~L---QE~------A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL~~------~gITIV~SPLiALIkDQiDHL~~L 84 (641)
T KOG0352|consen 20 FKSRL---QEQ------AINCIVKRKCDVYVSMPTGAGKSLCYQLPALVH------GGITIVISPLIALIKDQIDHLKRL 84 (641)
T ss_pred hcChH---HHH------HHHHHHhccCcEEEeccCCCchhhhhhchHHHh------CCeEEEehHHHHHHHHHHHHHHhc
Confidence 55678 999 88887776 699999999999999999999874 238999999999999988888876
Q ss_pred hccCCCceEEEEEcCcccHHhHH---HHhcC--CCcEEEEcHHHHHH-----HHHCCCCcCCCeeEEEecchhHHHhh-h
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEE---YLKTH--NPQIVVGTPGRILA-----LVRNKKLNLSLLKHFILDECDKMLEQ-L 272 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~---~l~~~--~~~IlV~Tp~~l~~-----~l~~~~~~~~~i~~lViDEah~l~~~-~ 272 (448)
.+.+..+.+..+..+... .+... ...+++-||+.... +|+ ...+-.-+.++|+||||++..| +
T Consensus 85 -----KVp~~SLNSKlSt~ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn-~L~~r~~L~Y~vVDEAHCVSQWGH 158 (641)
T KOG0352|consen 85 -----KVPCESLNSKLSTVERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLN-GLANRDVLRYIVVDEAHCVSQWGH 158 (641)
T ss_pred -----CCchhHhcchhhHHHHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHH-HHhhhceeeeEEechhhhHhhhcc
Confidence 455555555544333322 23222 35689999987532 222 1222345789999999999999 6
Q ss_pred hhHHHHHHHHHh--CCCCCeEEEEeccCCccHHHHHHH--hcCCCeEEEEcCcccccccceeEEEEEcC-cchHHHHHHH
Q psy1548 273 EMRRDVQEIFRS--SPHTKQVMMFSATLSKEIRPVCKK--FMHDPMEVYVDDEAKLTLHGLQQHYVKLK-ENEKNKKLFE 347 (448)
Q Consensus 273 ~~~~~~~~i~~~--l~~~~q~i~~SAT~~~~~~~~~~~--~l~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ 347 (448)
+|++++..+-.. .-+.+..++++||.++.+++.+-. -+++|+.+.-.+... .++-......+ -.+-+..|.+
T Consensus 159 DFRPDYL~LG~LRS~~~~vpwvALTATA~~~VqEDi~~qL~L~~PVAiFkTP~FR---~NLFYD~~~K~~I~D~~~~LaD 235 (641)
T KOG0352|consen 159 DFRPDYLTLGSLRSVCPGVPWVALTATANAKVQEDIAFQLKLRNPVAIFKTPTFR---DNLFYDNHMKSFITDCLTVLAD 235 (641)
T ss_pred ccCcchhhhhhHHhhCCCCceEEeecccChhHHHHHHHHHhhcCcHHhccCcchh---hhhhHHHHHHHHhhhHhHhHHH
Confidence 799999887443 335778999999999998886554 356888776544421 11100000000 0123344444
Q ss_pred HHhhC-------------CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 348 LLDVL-------------EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 348 ll~~~-------------~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
+.... ..+..||||.|+++|+.++-.|...|+++..||+|+...||.++.+.|-+++ +-|+.+|.
T Consensus 236 F~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~--~PvI~AT~ 313 (641)
T KOG0352|consen 236 FSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNNE--IPVIAATV 313 (641)
T ss_pred HHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcCC--CCEEEEEe
Confidence 44332 1246899999999999999999999999999999999999999999999998 34444443
No 79
>KOG0947|consensus
Probab=99.90 E-value=5.3e-23 Score=211.29 Aligned_cols=297 Identities=17% Similarity=0.181 Sum_probs=217.1
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
+..|+.++.||++ ++-.+..|.+|+|.|+|.+|||+++-.++.-.- ..+.+++|.+|-++|.+|-++.|+.
T Consensus 292 ~~~pFelD~FQk~------Ai~~lerg~SVFVAAHTSAGKTvVAEYAialaq---~h~TR~iYTSPIKALSNQKfRDFk~ 362 (1248)
T KOG0947|consen 292 LIYPFELDTFQKE------AIYHLERGDSVFVAAHTSAGKTVVAEYAIALAQ---KHMTRTIYTSPIKALSNQKFRDFKE 362 (1248)
T ss_pred hhCCCCccHHHHH------HHHHHHcCCeEEEEecCCCCcchHHHHHHHHHH---hhccceEecchhhhhccchHHHHHH
Confidence 5678999999999 999999999999999999999998766554321 3466999999999999997777766
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
-.+ .+++++|+.....+ +.++|+|.+.|.+|+-++.--..++.++|+||+|.+.+. ..+..+++++
T Consensus 363 tF~-----DvgLlTGDvqinPe--------AsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~-eRGvVWEEVi 428 (1248)
T KOG0947|consen 363 TFG-----DVGLLTGDVQINPE--------ASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDV-ERGVVWEEVI 428 (1248)
T ss_pred hcc-----ccceeecceeeCCC--------cceEeehHHHHHHHHhcccchhhccceEEEeeeeecccc-cccccceeee
Confidence 443 23489999876554 689999999999999998887899999999999999887 8999999999
Q ss_pred HhCCCCCeEEEEeccCCccHHHHHHHhcC-CCeEEEEcCcccccccceeEEEEEcC------------------------
Q psy1548 283 RSSPHTKQVMMFSATLSKEIRPVCKKFMH-DPMEVYVDDEAKLTLHGLQQHYVKLK------------------------ 337 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT~~~~~~~~~~~~l~-~~~~i~~~~~~~~~~~~i~~~~~~~~------------------------ 337 (448)
-++|+++++|++|||+|+. .+++.|... ....|++... ...+..+++++..-.
T Consensus 429 IMlP~HV~~IlLSATVPN~-~EFA~WIGRtK~K~IyViST-~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~ 506 (1248)
T KOG0947|consen 429 IMLPRHVNFILLSATVPNT-LEFADWIGRTKQKTIYVIST-SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSL 506 (1248)
T ss_pred eeccccceEEEEeccCCCh-HHHHHHhhhccCceEEEEec-CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhh
Confidence 9999999999999999886 355555432 1111111111 011122222211100
Q ss_pred ---------------------------------------cchHH--HHHHHHH---hhCCCCeEEEEECccHHHHHHHHH
Q psy1548 338 ---------------------------------------ENEKN--KKLFELL---DVLEFNQVVIFVKSVTRCIALSTL 373 (448)
Q Consensus 338 ---------------------------------------~~~k~--~~L~~ll---~~~~~~~~IIF~~s~~~a~~l~~~ 373 (448)
..++. ....+++ +...--++|+||-+++.|+..++.
T Consensus 507 ~~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~ 586 (1248)
T KOG0947|consen 507 KKEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADY 586 (1248)
T ss_pred cccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHH
Confidence 00011 1122333 222333799999999999999999
Q ss_pred HHhCCC---------------------------------------cEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 374 LSEQNF---------------------------------------PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 374 L~~~g~---------------------------------------~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
|...++ .++.+|||+-+--+.-+...|+.|- +-|+|+|.
T Consensus 587 L~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrGl--VKVLFATE 664 (1248)
T KOG0947|consen 587 LTNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRGL--VKVLFATE 664 (1248)
T ss_pred HhccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcCc--eEEEeehh
Confidence 974322 1788999999999999999999988 78888887
Q ss_pred hhhHHH--------HHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 415 ENDAKI--------LNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 415 ~~d~~~--------l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
..-+++ ...+.++-|....+|-+. .++||.||
T Consensus 665 TFAMGVNMPARtvVF~Sl~KhDG~efR~L~PG--EytQMAGR 704 (1248)
T KOG0947|consen 665 TFAMGVNMPARTVVFSSLRKHDGNEFRELLPG--EYTQMAGR 704 (1248)
T ss_pred hhhhhcCCCceeEEeeehhhccCcceeecCCh--hHHhhhcc
Confidence 543332 334667777777776443 58999988
No 80
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=6.5e-22 Score=212.04 Aligned_cols=283 Identities=17% Similarity=0.145 Sum_probs=172.6
Q ss_pred eeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 121 ~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
++...|+++ |+. +......+..+++.+|||+|||.+++..+...+. .....+++|..||+++++|+++.+
T Consensus 282 ~~~~~p~p~---Q~~------~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~-~~~~~gi~~aLPT~Atan~m~~Rl 351 (878)
T PRK09694 282 DNGYQPRQL---QTL------VDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID-QGLADSIIFALPTQATANAMLSRL 351 (878)
T ss_pred cCCCCChHH---HHH------HHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH-hCCCCeEEEECcHHHHHHHHHHHH
Confidence 334467777 998 4333234677999999999999998776654433 333458999999999999999998
Q ss_pred HHhhcc-CCCceEEEEEcCcccHHhH---------------------HHHhc-----CCCcEEEEcHHHHHHHH-HCCCC
Q psy1548 201 ERFSKY-MSNIKVGVFFGGLPIQKDE---------------------EYLKT-----HNPQIVVGTPGRILALV-RNKKL 252 (448)
Q Consensus 201 ~~~~~~-~~~~~v~~~~g~~~~~~~~---------------------~~l~~-----~~~~IlV~Tp~~l~~~l-~~~~~ 252 (448)
..+... +++..+.+.+|........ ..+.. .-.+|+|||+.+++..+ ..+..
T Consensus 352 ~~~~~~~f~~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~ 431 (878)
T PRK09694 352 EALASKLFPSPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHR 431 (878)
T ss_pred HHHHHHhcCCCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchH
Confidence 875542 2245666776654322110 11110 11589999999887543 22222
Q ss_pred cCCCe----eEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCccHHHHH-HHhcCC---------CeEEE
Q psy1548 253 NLSLL----KHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIRPVC-KKFMHD---------PMEVY 317 (448)
Q Consensus 253 ~~~~i----~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~~~~~~-~~~l~~---------~~~i~ 317 (448)
.+..+ ++|||||+|.+ +. .+...+..+++.+. ....+|+||||+|...++.+ ..+-.. |....
T Consensus 432 ~lR~~~La~svvIiDEVHAy-D~-ym~~lL~~~L~~l~~~g~~vIllSATLP~~~r~~L~~a~~~~~~~~~~~~YPlvt~ 509 (878)
T PRK09694 432 FIRGFGLGRSVLIVDEVHAY-DA-YMYGLLEAVLKAQAQAGGSVILLSATLPATLKQKLLDTYGGHDPVELSSAYPLITW 509 (878)
T ss_pred HHHHHhhccCeEEEechhhC-CH-HHHHHHHHHHHHHHhcCCcEEEEeCCCCHHHHHHHHHHhccccccccccccccccc
Confidence 22222 47999999966 43 45556666666543 35679999999998866543 333211 10000
Q ss_pred EcCc--ccc----------cccceeEEEEEcCc-chHHHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCC---Cc
Q psy1548 318 VDDE--AKL----------TLHGLQQHYVKLKE-NEKNKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQN---FP 380 (448)
Q Consensus 318 ~~~~--~~~----------~~~~i~~~~~~~~~-~~k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g---~~ 380 (448)
.... ... ....+.-....... ......+..+++. ..+++++|||||++.|+.+++.|++.+ .+
T Consensus 510 ~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~~~g~~vLVf~NTV~~Aq~ly~~L~~~~~~~~~ 589 (878)
T PRK09694 510 RGVNGAQRFDLSAHPEQLPARFTIQLEPICLADMLPDLTLLQRMIAAANAGAQVCLICNLVDDAQKLYQRLKELNNTQVD 589 (878)
T ss_pred cccccceeeeccccccccCcceEEEEEeeccccccCHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhhCCCCce
Confidence 0000 000 00111111111111 1122333444443 246789999999999999999999864 67
Q ss_pred EEEEeCCCCHHHH----HHHHHHH-hcCCCc-eEEEEecCh
Q psy1548 381 AVSIHRGMTQEER----LKKYQEF-KDFHKG-LAITFASDE 415 (448)
Q Consensus 381 ~~~lh~~~~~~eR----~~~l~~F-~~g~~g-~~I~~~t~~ 415 (448)
+..+||+++..+| .++++.| ++|+.. ..|.++|.-
T Consensus 590 v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQV 630 (878)
T PRK09694 590 IDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQV 630 (878)
T ss_pred EEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcc
Confidence 9999999999999 4678888 555421 256666653
No 81
>KOG0353|consensus
Probab=99.89 E-value=1.5e-22 Score=189.53 Aligned_cols=278 Identities=14% Similarity=0.189 Sum_probs=206.2
Q ss_pred ccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChh
Q psy1548 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGK 162 (448)
++++.+.+....+++.. |.+...|+ |.. +|...+.|+++++..|||.||
T Consensus 74 d~fpws~e~~~ilk~~f----------------------~lekfrpl---q~~------ain~~ma~ed~~lil~tgggk 122 (695)
T KOG0353|consen 74 DDFPWSDEAKDILKEQF----------------------HLEKFRPL---QLA------AINATMAGEDAFLILPTGGGK 122 (695)
T ss_pred CCCCCchHHHHHHHHHh----------------------hHHhcChh---HHH------HhhhhhccCceEEEEeCCCcc
Confidence 35666666666665543 46777888 999 999999999999999999999
Q ss_pred HHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH---HH--hcCCCcEEE
Q psy1548 163 TAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE---YL--KTHNPQIVV 237 (448)
Q Consensus 163 T~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~---~l--~~~~~~IlV 237 (448)
++||.+|+|.. ...+|++||...|+.++.-+++.+ ++....+....+.....+ .+ ++....+++
T Consensus 123 slcyqlpal~a------dg~alvi~plislmedqil~lkql-----gi~as~lnansske~~k~v~~~i~nkdse~kliy 191 (695)
T KOG0353|consen 123 SLCYQLPALCA------DGFALVICPLISLMEDQILQLKQL-----GIDASMLNANSSKEEAKRVEAAITNKDSEFKLIY 191 (695)
T ss_pred chhhhhhHHhc------CCceEeechhHHHHHHHHHHHHHh-----CcchhhccCcccHHHHHHHHHHHcCCCceeEEEE
Confidence 99999999874 347999999999999888888887 455455544444322111 11 222467999
Q ss_pred EcHHHHHH---HHH--CCCCcCCCeeEEEecchhHHHhh-hhhHHHHHHH--HHhCCCCCeEEEEeccCCccHHHHHHHh
Q psy1548 238 GTPGRILA---LVR--NKKLNLSLLKHFILDECDKMLEQ-LEMRRDVQEI--FRSSPHTKQVMMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 238 ~Tp~~l~~---~l~--~~~~~~~~i~~lViDEah~l~~~-~~~~~~~~~i--~~~l~~~~q~i~~SAT~~~~~~~~~~~~ 309 (448)
.||+++.. ++. ++.+....++++.+||+|+...| ++|++++..+ ++.--++..+++++||.++.+.+.++..
T Consensus 192 vtpekiaksk~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ilkrqf~~~~iigltatatn~vl~d~k~i 271 (695)
T KOG0353|consen 192 VTPEKIAKSKKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALGILKRQFKGAPIIGLTATATNHVLDDAKDI 271 (695)
T ss_pred ecHHHHHHHHHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHHHHHHhCCCCceeeeehhhhcchhhHHHHH
Confidence 99999853 221 24455678899999999999998 6799988864 5555578889999999999887777766
Q ss_pred cCCCeEEEEcCcccccccceeEEEEEcCcc--hHHHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC
Q psy1548 310 MHDPMEVYVDDEAKLTLHGLQQHYVKLKEN--EKNKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386 (448)
Q Consensus 310 l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~--~k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~ 386 (448)
+.-...+..... ...+++...+...+.. +-.+-+..+++. ..+...||||-+++.|++++..|+.+|+.+..+|+
T Consensus 272 l~ie~~~tf~a~--fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha 349 (695)
T KOG0353|consen 272 LCIEAAFTFRAG--FNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHA 349 (695)
T ss_pred HhHHhhheeecc--cCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCcccccccc
Confidence 543222222222 3445665555544432 233444555543 35668999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC
Q psy1548 387 GMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~ 404 (448)
.|.+++|.-+-+.|-.|+
T Consensus 350 ~lep~dks~~hq~w~a~e 367 (695)
T KOG0353|consen 350 NLEPEDKSGAHQGWIAGE 367 (695)
T ss_pred ccCccccccccccccccc
Confidence 999999999999999998
No 82
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.88 E-value=3e-22 Score=209.16 Aligned_cols=250 Identities=16% Similarity=0.130 Sum_probs=163.7
Q ss_pred cCCCCchhhhhhhccccccceeeee-C--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVL-G--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~-g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
.....+++||++ ++..++. | ++.++++|||+|||++.+..+.. + +.++|||||+..|+.||.+.+
T Consensus 251 ~~~~~LRpYQ~e------Al~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~-l-----~k~tLILvps~~Lv~QW~~ef 318 (732)
T TIGR00603 251 KPTTQIRPYQEK------SLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACT-V-----KKSCLVLCTSAVSVEQWKQQF 318 (732)
T ss_pred ccCCCcCHHHHH------HHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHH-h-----CCCEEEEeCcHHHHHHHHHHH
Confidence 344668999999 7766653 4 47899999999999997655433 2 236999999999999999999
Q ss_pred HHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCC--------CCcCCCeeEEEecchhHHHhhh
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK--------KLNLSLLKHFILDECDKMLEQL 272 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--------~~~~~~i~~lViDEah~l~~~~ 272 (448)
.++.... ...+..++|+..... .....|+|+|++.+.....+. .+.-..+.++|+||||++...
T Consensus 319 ~~~~~l~-~~~I~~~tg~~k~~~------~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~- 390 (732)
T TIGR00603 319 KMWSTID-DSQICRFTSDAKERF------HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA- 390 (732)
T ss_pred HHhcCCC-CceEEEEecCccccc------ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-
Confidence 9987543 456677777642111 112579999998875432221 122245779999999988654
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEeccCCccHH--HHHHHhcCCCeEEEEcCcc-----cccccceeEEEE-----------
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSATLSKEIR--PVCKKFMHDPMEVYVDDEA-----KLTLHGLQQHYV----------- 334 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~--~~~~~~l~~~~~i~~~~~~-----~~~~~~i~~~~~----------- 334 (448)
.|+ .++..++ ....+++|||+..+-. ..+. ++-.|..+...... ...........+
T Consensus 391 ~fr----~il~~l~-a~~RLGLTATP~ReD~~~~~L~-~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl 464 (732)
T TIGR00603 391 MFR----RVLTIVQ-AHCKLGLTATLVREDDKITDLN-FLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL 464 (732)
T ss_pred HHH----HHHHhcC-cCcEEEEeecCcccCCchhhhh-hhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH
Confidence 433 3444443 3346999999864321 1222 22334443332210 111111100111
Q ss_pred ----------EcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 335 ----------KLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 335 ----------~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
......|+..+..+++.+ .+.++||||++...++.++..|. +..+||++++.+|.++++.|++
T Consensus 465 ~~~~~~k~~l~~~np~K~~~~~~Li~~he~~g~kiLVF~~~~~~l~~~a~~L~-----~~~I~G~ts~~ER~~il~~Fr~ 539 (732)
T TIGR00603 465 RENSRKRMLLYVMNPNKFRACQFLIRFHEQRGDKIIVFSDNVFALKEYAIKLG-----KPFIYGPTSQQERMQILQNFQH 539 (732)
T ss_pred HhcchhhhHHhhhChHHHHHHHHHHHHHhhcCCeEEEEeCCHHHHHHHHHHcC-----CceEECCCCHHHHHHHHHHHHh
Confidence 111224666666777655 66799999999999999998873 4568999999999999999997
Q ss_pred CC
Q psy1548 403 FH 404 (448)
Q Consensus 403 g~ 404 (448)
|.
T Consensus 540 ~~ 541 (732)
T TIGR00603 540 NP 541 (732)
T ss_pred CC
Confidence 63
No 83
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.88 E-value=3e-21 Score=211.18 Aligned_cols=258 Identities=17% Similarity=0.209 Sum_probs=166.7
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec----cHHHHHHHHHHHH
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH----TRELAFQISKEYE 201 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P----t~~L~~q~~~~~~ 201 (448)
--|+..+-.+ .+..+..+..++++|+||||||. .+|.+...........+++.-| +++||.++.+.+.
T Consensus 72 ~LPi~~~r~~------Il~ai~~~~VviI~GeTGSGKTT--qlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 72 NLPVSQKKQD------ILEAIRDHQVVIVAGETGSGKTT--QLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred CCCHHHHHHH------HHHHHHhCCeEEEECCCCCCHHH--HHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 3455555555 55566566778889999999998 4784432211111123344446 5678888877776
Q ss_pred HhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchh-HHHhhhhhHHH-HH
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD-KMLEQLEMRRD-VQ 279 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah-~l~~~~~~~~~-~~ 279 (448)
.-. +-.+++-... ..+. .. .++|+|+||++|++.+..+.. ++++++||||||| ++++. +|... +.
T Consensus 144 ~~l----G~~VGY~vrf---~~~~---s~-~t~I~v~TpG~LL~~l~~d~~-Ls~~~~IIIDEAHERsLn~-DfLLg~Lk 210 (1294)
T PRK11131 144 TEL----GGCVGYKVRF---NDQV---SD-NTMVKLMTDGILLAEIQQDRL-LMQYDTIIIDEAHERSLNI-DFILGYLK 210 (1294)
T ss_pred hhh----cceeceeecC---cccc---CC-CCCEEEEChHHHHHHHhcCCc-cccCcEEEecCcccccccc-chHHHHHH
Confidence 421 2222222111 1111 12 379999999999999886644 8999999999999 46665 66543 33
Q ss_pred HHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcc------hHHHHHHHHHh---
Q psy1548 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN------EKNKKLFELLD--- 350 (448)
Q Consensus 280 ~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~------~k~~~L~~ll~--- 350 (448)
.++.. .++.|+|+||||++. ..+.+.|...|. +.+... ...+..+|...... +....+...+.
T Consensus 211 ~lL~~-rpdlKvILmSATid~--e~fs~~F~~apv-I~V~Gr----~~pVei~y~p~~~~~~~~~~d~l~~ll~~V~~l~ 282 (1294)
T PRK11131 211 ELLPR-RPDLKVIITSATIDP--ERFSRHFNNAPI-IEVSGR----TYPVEVRYRPIVEEADDTERDQLQAIFDAVDELG 282 (1294)
T ss_pred Hhhhc-CCCceEEEeeCCCCH--HHHHHHcCCCCE-EEEcCc----cccceEEEeecccccchhhHHHHHHHHHHHHHHh
Confidence 33322 246799999999974 466666666664 444332 13355666655332 12233333222
Q ss_pred hCCCCeEEEEECccHHHHHHHHHHHhCCCc---EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 351 VLEFNQVVIFVKSVTRCIALSTLLSEQNFP---AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 351 ~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~---~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
....+.+||||++..+++.+++.|++.+++ +..+||+|++++|.++++.+ | +..|.++|+-.
T Consensus 283 ~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~~--g--~rkIIVATNIA 347 (1294)
T PRK11131 283 REGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQSH--S--GRRIVLATNVA 347 (1294)
T ss_pred cCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhccc--C--CeeEEEeccHH
Confidence 234678999999999999999999988764 77899999999999998863 3 34677777643
No 84
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.88 E-value=2.2e-21 Score=206.48 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=201.7
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
..|..+++||++ ++..+..|.+|+++||||+|||++...++...+..+ .+++|.+|.++|.+|.++.+...
T Consensus 115 ~~~F~LD~fQ~~------a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~~~---qrviYTsPIKALsNQKyrdl~~~ 185 (1041)
T COG4581 115 EYPFELDPFQQE------AIAILERGESVLVCAPTSSGKTVVAEYAIALALRDG---QRVIYTSPIKALSNQKYRDLLAK 185 (1041)
T ss_pred hCCCCcCHHHHH------HHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHHcC---CceEeccchhhhhhhHHHHHHHH
Confidence 367788999999 999999999999999999999999888877766443 36999999999999998888776
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
.+.. .-.+++++|+...+.. +.++|.|.+.|.+++..+...+..+.++|+||+|.|.+. ..+..+++++.
T Consensus 186 fgdv-~~~vGL~TGDv~IN~~--------A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~-eRG~VWEE~Ii 255 (1041)
T COG4581 186 FGDV-ADMVGLMTGDVSINPD--------APCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDR-ERGVVWEEVII 255 (1041)
T ss_pred hhhh-hhhccceecceeeCCC--------CceEEeeHHHHHHHhccCcccccccceEEEEeeeecccc-ccchhHHHHHH
Confidence 5432 2346889999876543 689999999999999999889999999999999999997 88999999999
Q ss_pred hCCCCCeEEEEeccCCccHHHHHHHhc---CCCeEEEEcCcccccccceeEEEEEc-------CcchH------------
Q psy1548 284 SSPHTKQVMMFSATLSKEIRPVCKKFM---HDPMEVYVDDEAKLTLHGLQQHYVKL-------KENEK------------ 341 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~~~~~~~~~~l---~~~~~i~~~~~~~~~~~~i~~~~~~~-------~~~~k------------ 341 (448)
.+|...|+++||||+|+. .++..|+. ..|..+..... .+..+.+++..- +...+
T Consensus 256 ~lP~~v~~v~LSATv~N~-~EF~~Wi~~~~~~~~~vv~t~~---RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~ 331 (1041)
T COG4581 256 LLPDHVRFVFLSATVPNA-EEFAEWIQRVHSQPIHVVSTEH---RPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRS 331 (1041)
T ss_pred hcCCCCcEEEEeCCCCCH-HHHHHHHHhccCCCeEEEeecC---CCCCeEEEEecCCceeeeecccccchhhcchhhhhh
Confidence 999999999999999876 34444433 34554443333 233344443221 11110
Q ss_pred -----------------------------------HHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC---------
Q psy1548 342 -----------------------------------NKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ--------- 377 (448)
Q Consensus 342 -----------------------------------~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~--------- 377 (448)
...+...+.....-++|+|+-++..|+..+..+...
T Consensus 332 l~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~e 411 (1041)
T COG4581 332 LSCFSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDKDNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEKE 411 (1041)
T ss_pred hhccchhccccCccccccccccccccCCcccccccchHHHhhhhhhcCCceEEEEEchhhHHHHHHHhcccccccCCcHH
Confidence 001122222223447999999999999999877511
Q ss_pred -------------------CCc-------------EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 378 -------------------NFP-------------AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 378 -------------------g~~-------------~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+++ ..++|+||-+..|..+...|+.|- +-+.|+|..
T Consensus 412 ~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~GL--vkvvFaTeT 479 (1041)
T COG4581 412 RAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEGL--VKVVFATET 479 (1041)
T ss_pred HHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhccc--eeEEeehhh
Confidence 111 458999999999999999999998 566666654
No 85
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.88 E-value=6.5e-21 Score=200.73 Aligned_cols=259 Identities=17% Similarity=0.183 Sum_probs=176.9
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |-. ..-.+..|+ |..++||+|||++|.+|++.....+ ..++|++||+.||.|..+.+..+.
T Consensus 82 ~~ydv---Qli------Gg~~Lh~G~--Iaem~TGeGKTL~a~Lpa~~~al~G---~~V~VvTpn~yLA~qd~e~m~~l~ 147 (896)
T PRK13104 82 RHFDV---QLI------GGMVLHEGN--IAEMRTGEGKTLVATLPAYLNAISG---RGVHIVTVNDYLAKRDSQWMKPIY 147 (896)
T ss_pred CcchH---HHh------hhhhhccCc--cccccCCCCchHHHHHHHHHHHhcC---CCEEEEcCCHHHHHHHHHHHHHHh
Confidence 56677 777 222334444 8899999999999999999776543 359999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC-CCcC-----CCeeEEEecchhHHHhh------
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK-KLNL-----SLLKHFILDECDKMLEQ------ 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~i~~lViDEah~l~~~------ 271 (448)
..+ ++++++++|+.+...+...+ .++|+||||+++ .++++.+ .+++ ..+.++|+||||.|+-+
T Consensus 148 ~~l-GLtv~~i~gg~~~~~r~~~y---~~dIvygT~grlgfDyLrd~~~~~~~~~v~r~l~~~IvDEaDsiLIDeArtPL 223 (896)
T PRK13104 148 EFL-GLTVGVIYPDMSHKEKQEAY---KADIVYGTNNEYGFDYLRDNMAFSLTDKVQRELNFAIVDEVDSILIDEARTPL 223 (896)
T ss_pred ccc-CceEEEEeCCCCHHHHHHHh---CCCEEEECChhhhHHHHhcCCccchHhhhccccceEEeccHhhhhhhccCCce
Confidence 998 89999999998766655444 389999999999 8888876 3334 58899999999988633
Q ss_pred ---------hhhHHHHHHHHHhCCCC--------------CeEEEEec--------------------------------
Q psy1548 272 ---------LEMRRDVQEIFRSSPHT--------------KQVMMFSA-------------------------------- 296 (448)
Q Consensus 272 ---------~~~~~~~~~i~~~l~~~--------------~q~i~~SA-------------------------------- 296 (448)
......+..+...+... .+.+.+|-
T Consensus 224 IISg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~dy~idek~~~v~Lte~G~~~~e~~~~~~~il~~~~~l~~~~~~~~~~ 303 (896)
T PRK13104 224 IISGAAEDSSELYIKINSLIPQLKKQEEEGDEGDYTIDEKQKQAHLTDAGHLHIEELLTKAKLLDPGESLYHASNIMLMH 303 (896)
T ss_pred eeeCCCccchHHHHHHHHHHHHHHhccccCCCCCEEEEcCCCceEEchHHHHHHHHHHHhCCccCCcccccCchhhhHHH
Confidence 11222222232222111 11222222
Q ss_pred --------------------------------------------------------------------------------
Q psy1548 297 -------------------------------------------------------------------------------- 296 (448)
Q Consensus 297 -------------------------------------------------------------------------------- 296 (448)
T Consensus 304 ~i~~aL~A~~lf~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~GLHQaiEaKE~v~i~~e~~t~AsIT~Qn~Fr~Y~kLs 383 (896)
T PRK13104 304 HVNAALKAHAMFHRDIDYIVKDNQVVIVDEHTGRTMPGRRWSEGLHQAVEAKEGVPIQNENQTLASITFQNFFRMYNKLS 383 (896)
T ss_pred HHHHHHHHHHHhcCCCceEEECCEEEEEECCCCCcCCCCCcChHHHHHHHHHcCCCCCCCceeeeeehHHHHHHhcchhc
Confidence
Q ss_pred ----cCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHH
Q psy1548 297 ----TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIAL 370 (448)
Q Consensus 297 ----T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l 370 (448)
|...+..++...|--+-+ .+.+. ......-....++.....|..++.+.+... .+.++||||+|++.++.+
T Consensus 384 GMTGTa~te~~Ef~~iY~l~Vv--~IPtn-kp~~R~d~~d~v~~t~~~k~~av~~~i~~~~~~g~PVLVgt~Sie~sE~l 460 (896)
T PRK13104 384 GMTGTADTEAYEFQQIYNLEVV--VIPTN-RSMIRKDEADLVYLTQADKFQAIIEDVRECGVRKQPVLVGTVSIEASEFL 460 (896)
T ss_pred cCCCCChhHHHHHHHHhCCCEE--ECCCC-CCcceecCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHH
Confidence 111111111111110000 00000 000000011234455667888887777443 567999999999999999
Q ss_pred HHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 371 ~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+..|++.|++...+|+.+.+.+|..+.+.|+.|.
T Consensus 461 s~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G~ 494 (896)
T PRK13104 461 SQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPGA 494 (896)
T ss_pred HHHHHHcCCCeEeecCCCChHHHHHHHhCCCCCc
Confidence 9999999999999999999999999999999986
No 86
>KOG0951|consensus
Probab=99.87 E-value=1.1e-21 Score=206.30 Aligned_cols=262 Identities=21% Similarity=0.303 Sum_probs=192.5
Q ss_pred cceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccC--------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceE
Q psy1548 142 FGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTD--------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212 (448)
Q Consensus 142 ~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~--------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 212 (448)
..+.++.+ .|+++|||||+|||..+++.+|+.+..+. ...+++|++|+++|++.+...+.+....+ +++|
T Consensus 317 v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla~~-GI~V 395 (1674)
T KOG0951|consen 317 VYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLAPL-GITV 395 (1674)
T ss_pred HHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcccc-CcEE
Confidence 66677765 69999999999999999999999986543 23589999999999999988888877777 9999
Q ss_pred EEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC--CcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-----
Q psy1548 213 GVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK--LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS----- 285 (448)
Q Consensus 213 ~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l----- 285 (448)
.-.+|+.....+. +. ..+|+||||++.--.-+++. ...+-++++|+||.|.+.+ +.++.++.+..+.
T Consensus 396 ~ElTgD~~l~~~q--ie--eTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhD--dRGpvLESIVaRt~r~se 469 (1674)
T KOG0951|consen 396 LELTGDSQLGKEQ--IE--ETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHD--DRGPVLESIVARTFRRSE 469 (1674)
T ss_pred EEecccccchhhh--hh--cceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhccc--ccchHHHHHHHHHHHHhh
Confidence 9999987644332 11 36899999999755444422 2235678899999996655 5777776665433
Q ss_pred --CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcch---HHHHHHH-----HHhhCCCC
Q psy1548 286 --PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE---KNKKLFE-----LLDVLEFN 355 (448)
Q Consensus 286 --~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~---k~~~L~~-----ll~~~~~~ 355 (448)
...++++++|||+|+- .+....+..++..+...+. ...+..++|.|+.+...+ +.+++.+ ++.....+
T Consensus 470 s~~e~~RlVGLSATLPNy-~DV~~Fl~v~~~glf~fd~-syRpvPL~qq~Igi~ek~~~~~~qamNe~~yeKVm~~agk~ 547 (1674)
T KOG0951|consen 470 STEEGSRLVGLSATLPNY-EDVASFLRVDPEGLFYFDS-SYRPVPLKQQYIGITEKKPLKRFQAMNEACYEKVLEHAGKN 547 (1674)
T ss_pred hcccCceeeeecccCCch-hhhHHHhccCcccccccCc-ccCcCCccceEeccccCCchHHHHHHHHHHHHHHHHhCCCC
Confidence 3467999999999986 3444333344533433333 467788999999887653 3333333 33444557
Q ss_pred eEEEEECccHHHHHHHHHHHhC-------------------------------------CCcEEEEeCCCCHHHHHHHHH
Q psy1548 356 QVVIFVKSVTRCIALSTLLSEQ-------------------------------------NFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 356 ~~IIF~~s~~~a~~l~~~L~~~-------------------------------------g~~~~~lh~~~~~~eR~~~l~ 398 (448)
++|||+.+++++-+.|+.++.. .+.++.+|+||+..+|..+.+
T Consensus 548 qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~Ed 627 (1674)
T KOG0951|consen 548 QVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVED 627 (1674)
T ss_pred cEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHH
Confidence 9999999999999999888721 123789999999999999999
Q ss_pred HHhcCCCceEEEEecC
Q psy1548 399 EFKDFHKGLAITFASD 414 (448)
Q Consensus 399 ~F~~g~~g~~I~~~t~ 414 (448)
.|..|+ +.+.++|.
T Consensus 628 Lf~~g~--iqvlvsta 641 (1674)
T KOG0951|consen 628 LFADGH--IQVLVSTA 641 (1674)
T ss_pred HHhcCc--eeEEEeeh
Confidence 999999 44444444
No 87
>KOG0948|consensus
Probab=99.87 E-value=6.3e-21 Score=191.85 Aligned_cols=254 Identities=20% Similarity=0.204 Sum_probs=197.5
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+|..+++||.. ++..+-++.+|+++|.|.+|||.++-.++.+.+... -|+||..|-++|.+|-++.+..=
T Consensus 125 ~YPF~LDpFQ~~------aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr~k---QRVIYTSPIKALSNQKYREl~~E 195 (1041)
T KOG0948|consen 125 TYPFTLDPFQST------AIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLREK---QRVIYTSPIKALSNQKYRELLEE 195 (1041)
T ss_pred CCCcccCchHhh------hhhhhcCCceEEEEeecCCCcchHHHHHHHHHHHhc---CeEEeeChhhhhcchhHHHHHHH
Confidence 468889999999 999999999999999999999999988888776543 38999999999999988777653
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
.+ .|++.+|+...... +..+|+|.+.|.+++-++.--+..+.|+|+||+|.|-+. ..+-.+++-+-
T Consensus 196 F~-----DVGLMTGDVTInP~--------ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDk-ERGVVWEETII 261 (1041)
T KOG0948|consen 196 FK-----DVGLMTGDVTINPD--------ASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDK-ERGVVWEETII 261 (1041)
T ss_pred hc-----ccceeecceeeCCC--------CceeeeHHHHHHHHHhccchHhheeeeEEeeeehhcccc-ccceeeeeeEE
Confidence 32 56788999876654 679999999999999998888999999999999999886 77788888888
Q ss_pred hCCCCCeEEEEeccCCccHHHHHHH---hcCCCeEEEEcCcccccccceeEEEEE---------cCcc-----hHHHH--
Q psy1548 284 SSPHTKQVMMFSATLSKEIRPVCKK---FMHDPMEVYVDDEAKLTLHGLQQHYVK---------LKEN-----EKNKK-- 344 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~~~~~~~~~---~l~~~~~i~~~~~~~~~~~~i~~~~~~---------~~~~-----~k~~~-- 344 (448)
.+|++.+.+++|||+|+. .+++.| .-+.|..+...+- .+..++||.+. +++. +.+..
T Consensus 262 llP~~vr~VFLSATiPNA-~qFAeWI~~ihkQPcHVVYTdy---RPTPLQHyifP~ggdGlylvVDek~~FrednF~~am 337 (1041)
T KOG0948|consen 262 LLPDNVRFVFLSATIPNA-RQFAEWICHIHKQPCHVVYTDY---RPTPLQHYIFPAGGDGLYLVVDEKGKFREDNFQKAM 337 (1041)
T ss_pred eccccceEEEEeccCCCH-HHHHHHHHHHhcCCceEEeecC---CCCcceeeeecCCCCeeEEEEecccccchHHHHHHH
Confidence 999999999999999986 344444 4456766554333 23445555222 2221 11222
Q ss_pred ------------------------------------HHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCc--------
Q psy1548 345 ------------------------------------LFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP-------- 380 (448)
Q Consensus 345 ------------------------------------L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~-------- 380 (448)
+...+-.....++|||+-++++|+.+|-.+.+..++
T Consensus 338 ~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V 417 (1041)
T KOG0948|consen 338 SVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIMERNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELV 417 (1041)
T ss_pred HHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHhhcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHH
Confidence 222222233458999999999999999988765443
Q ss_pred -------------------------------EEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 381 -------------------------------AVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 381 -------------------------------~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+..+|+|+-+--+.-+.=.|++|-
T Consensus 418 ~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGL 472 (1041)
T KOG0948|consen 418 ETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGL 472 (1041)
T ss_pred HHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccH
Confidence 788999999998888888999987
No 88
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.86 E-value=4.2e-20 Score=196.31 Aligned_cols=255 Identities=20% Similarity=0.188 Sum_probs=170.5
Q ss_pred CCCCchhhhhhhccccccceeeeeC---cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLG---MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g---~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
.|..+.++|++ +++.+..+ +++++.++||||||.+|+.++...+.. +.++||++|+++|+.|+.+.++
T Consensus 141 ~~~~Lt~~Q~~------ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~---g~~vLvLvPt~~L~~Q~~~~l~ 211 (679)
T PRK05580 141 EPPTLNPEQAA------AVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQ---GKQALVLVPEIALTPQMLARFR 211 (679)
T ss_pred CCCCCCHHHHH------HHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHH
Confidence 45556777999 88888774 789999999999999998887776643 4589999999999999998888
Q ss_pred HhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhh----h
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE----M 274 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~----~ 274 (448)
+.. +.++..++|+.+..+.. ..+..+.++|+|||++.+. ..+++++++|+||+|...-... +
T Consensus 212 ~~f----g~~v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~-------~p~~~l~liVvDEeh~~s~~~~~~p~y 280 (679)
T PRK05580 212 ARF----GAPVAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALF-------LPFKNLGLIIVDEEHDSSYKQQEGPRY 280 (679)
T ss_pred HHh----CCCEEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhc-------ccccCCCEEEEECCCccccccCcCCCC
Confidence 754 56788899987755443 3345566899999998763 4478899999999996532201 1
Q ss_pred -HHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcc-cccccceeEEEEEcCcch-------HHHHH
Q psy1548 275 -RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA-KLTLHGLQQHYVKLKENE-------KNKKL 345 (448)
Q Consensus 275 -~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~-------k~~~L 345 (448)
..++ .+++....+.+++++|||.+.+....+.. +....+...... ....+.+ ..+...... -...+
T Consensus 281 ~~r~v-a~~ra~~~~~~~il~SATps~~s~~~~~~--g~~~~~~l~~r~~~~~~p~v--~~id~~~~~~~~~~~~ls~~l 355 (679)
T PRK05580 281 HARDL-AVVRAKLENIPVVLGSATPSLESLANAQQ--GRYRLLRLTKRAGGARLPEV--EIIDMRELLRGENGSFLSPPL 355 (679)
T ss_pred cHHHH-HHHHhhccCCCEEEEcCCCCHHHHHHHhc--cceeEEEeccccccCCCCeE--EEEechhhhhhcccCCCCHHH
Confidence 1122 23344457889999999977554443321 122222222210 0111111 111111100 11223
Q ss_pred HHHHhh-C-CCCeEEEEECcc-----------------------------------------------------------
Q psy1548 346 FELLDV-L-EFNQVVIFVKSV----------------------------------------------------------- 364 (448)
Q Consensus 346 ~~ll~~-~-~~~~~IIF~~s~----------------------------------------------------------- 364 (448)
.+.++. . .++++|||+|++
T Consensus 356 ~~~i~~~l~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~Cg~~~l~~~ 435 (679)
T PRK05580 356 LEAIKQRLERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQEPIPKACPECGSTDLVPV 435 (679)
T ss_pred HHHHHHHHHcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCCCCCCCCCCCCcCCeeEEe
Confidence 333332 2 355899998753
Q ss_pred -HHHHHHHHHHHhC--CCcEEEEeCCCC--HHHHHHHHHHHhcCC
Q psy1548 365 -TRCIALSTLLSEQ--NFPAVSIHRGMT--QEERLKKYQEFKDFH 404 (448)
Q Consensus 365 -~~a~~l~~~L~~~--g~~~~~lh~~~~--~~eR~~~l~~F~~g~ 404 (448)
..++++++.|++. +.++..+|++++ ++++.+++++|++|+
T Consensus 436 g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g~ 480 (679)
T PRK05580 436 GPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARGE 480 (679)
T ss_pred eccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcCC
Confidence 2567888888886 789999999997 468999999999987
No 89
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.86 E-value=1.9e-20 Score=197.01 Aligned_cols=153 Identities=18% Similarity=0.246 Sum_probs=132.4
Q ss_pred ccCCCCHHHHHHHh-----hccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 83 RDFLLKPEILRAIV-----DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 83 ~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+.+.+..++.+.+. ..| |..|+.+.+||.+ ++|.+..+++++++++
T Consensus 65 eafal~re~~~r~lg~~~~~~G-----------------------~~~p~~~tp~qvQ------~I~~i~l~~gvIAeaq 115 (970)
T PRK12899 65 EAYGVVKNVCRRLAGTPVEVSG-----------------------YHQQWDMVPYDVQ------ILGAIAMHKGFITEMQ 115 (970)
T ss_pred HHhCCCHHHHHHHhcccccccc-----------------------ccCCCCCChHHHH------HhhhhhcCCCeEEEeC
Confidence 46778888888876 456 9999777777999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
||+|||++|++|++..+..+. .++||+||++||.|+.+.+..+.+.+ ++++++++||.+...+...+ .++|+|
T Consensus 116 TGeGKTLAf~LP~l~~aL~g~---~v~IVTpTrELA~Qdae~m~~L~k~l-GLsV~~i~GG~~~~eq~~~y---~~DIVy 188 (970)
T PRK12899 116 TGEGKTLTAVMPLYLNALTGK---PVHLVTVNDYLAQRDCEWVGSVLRWL-GLTTGVLVSGSPLEKRKEIY---QCDVVY 188 (970)
T ss_pred CCCChHHHHHHHHHHHHhhcC---CeEEEeCCHHHHHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHc---CCCEEE
Confidence 999999999999998775432 48899999999999999999999988 89999999999888776554 389999
Q ss_pred EcHHHH-HHHHHCCCCcCC-------CeeEEEecchhHHHhh
Q psy1548 238 GTPGRI-LALVRNKKLNLS-------LLKHFILDECDKMLEQ 271 (448)
Q Consensus 238 ~Tp~~l-~~~l~~~~~~~~-------~i~~lViDEah~l~~~ 271 (448)
|||+++ .++++.+.+.++ .+.++|+||||.|+-+
T Consensus 189 gTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLiD 230 (970)
T PRK12899 189 GTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILID 230 (970)
T ss_pred ECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhhh
Confidence 999999 999998766665 4589999999988654
No 90
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=99.85 E-value=5.9e-20 Score=186.28 Aligned_cols=248 Identities=18% Similarity=0.154 Sum_probs=160.5
Q ss_pred Cchhhhhhhccccccceeeee----CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~----g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+++||++ ++..+.. ++..++++|||+|||.+++..+... ...+|||||+++|+.|+.+.+.+.
T Consensus 36 ~lr~yQ~~------al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~------~~~~Lvlv~~~~L~~Qw~~~~~~~ 103 (442)
T COG1061 36 ELRPYQEE------ALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL------KRSTLVLVPTKELLDQWAEALKKF 103 (442)
T ss_pred CCcHHHHH------HHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh------cCCEEEEECcHHHHHHHHHHHHHh
Confidence 46888999 7767666 8999999999999998876655443 123999999999999998777776
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
... +..++.+.|+...... ..|.|+|.+.+........+......+||+||||++... .++.....+
T Consensus 104 ~~~--~~~~g~~~~~~~~~~~--------~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~-- 170 (442)
T COG1061 104 LLL--NDEIGIYGGGEKELEP--------AKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELL-- 170 (442)
T ss_pred cCC--ccccceecCceeccCC--------CcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhh--
Confidence 532 1234444444321110 259999999887642112233346889999999998775 443333332
Q ss_pred hCCCCCeEEEEeccCCccHHH---HHHHhcCCCeEEEEcCcc-----cccccceeEEEE---------------------
Q psy1548 284 SSPHTKQVMMFSATLSKEIRP---VCKKFMHDPMEVYVDDEA-----KLTLHGLQQHYV--------------------- 334 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~~~~~---~~~~~l~~~~~i~~~~~~-----~~~~~~i~~~~~--------------------- 334 (448)
.....++++|||++..-.. .+..++ .|..+...... ...+..+.....
T Consensus 171 --~~~~~~LGLTATp~R~D~~~~~~l~~~~-g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~~~~~~~~~~~ 247 (442)
T COG1061 171 --SAAYPRLGLTATPEREDGGRIGDLFDLI-GPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYAKESARFRELL 247 (442)
T ss_pred --hcccceeeeccCceeecCCchhHHHHhc-CCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhhhhhhhhhhhh
Confidence 2222289999997643211 111122 23333332110 111111111111
Q ss_pred ---------------EcCcchHHHHHHHHHhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy1548 335 ---------------KLKENEKNKKLFELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 335 ---------------~~~~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~ 398 (448)
......+...+..++..+ .+.+++|||.+..+++.++..|...|+ +..+.+..+..+|..+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lif~~~~~~a~~i~~~~~~~~~-~~~it~~t~~~eR~~il~ 326 (442)
T COG1061 248 RARGTLRAENEARRIAIASERKIAAVRGLLLKHARGDKTLIFASDVEHAYEIAKLFLAPGI-VEAITGETPKEEREAILE 326 (442)
T ss_pred hhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhcCCCcEEEEeccHHHHHHHHHHhcCCCc-eEEEECCCCHHHHHHHHH
Confidence 001112334444455444 366999999999999999999999888 899999999999999999
Q ss_pred HHhcCC
Q psy1548 399 EFKDFH 404 (448)
Q Consensus 399 ~F~~g~ 404 (448)
.|+.|.
T Consensus 327 ~fr~g~ 332 (442)
T COG1061 327 RFRTGG 332 (442)
T ss_pred HHHcCC
Confidence 999987
No 91
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.84 E-value=2.1e-19 Score=189.26 Aligned_cols=264 Identities=20% Similarity=0.197 Sum_probs=184.7
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHH-HhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATL-QQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.|..+ |-. ..-.+..|+ |..++||+|||+++.+|++ +.+ .+ ..+-|++||..||.|..+.+..+
T Consensus 81 ~~~dv---Qli------g~l~L~~G~--Iaem~TGeGKTLva~lpa~l~aL-~G---~~V~IvTpn~yLA~rd~e~~~~l 145 (830)
T PRK12904 81 RHFDV---QLI------GGMVLHEGK--IAEMKTGEGKTLVATLPAYLNAL-TG---KGVHVVTVNDYLAKRDAEWMGPL 145 (830)
T ss_pred CCCcc---HHH------hhHHhcCCc--hhhhhcCCCcHHHHHHHHHHHHH-cC---CCEEEEecCHHHHHHHHHHHHHH
Confidence 67788 888 443445564 8999999999999999996 544 32 24679999999999999999999
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCCC------CcCCCeeEEEecchhHHHhh-----
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNKK------LNLSLLKHFILDECDKMLEQ----- 271 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~~~----- 271 (448)
...+ ++++++++|+.+...+...+ .++|++|||+.+ .++++.+. .....+.++|+||||.|+=+
T Consensus 146 ~~~L-Glsv~~i~~~~~~~er~~~y---~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLIDeArtp 221 (830)
T PRK12904 146 YEFL-GLSVGVILSGMSPEERREAY---AADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILIDEARTP 221 (830)
T ss_pred Hhhc-CCeEEEEcCCCCHHHHHHhc---CCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheeccCCCc
Confidence 9999 99999999998877665554 379999999999 88887654 23678899999999987532
Q ss_pred ----------hhhHHHHHHHHHhCCCC--------C--------------------------------------------
Q psy1548 272 ----------LEMRRDVQEIFRSSPHT--------K-------------------------------------------- 289 (448)
Q Consensus 272 ----------~~~~~~~~~i~~~l~~~--------~-------------------------------------------- 289 (448)
......+..+...+... .
T Consensus 222 LiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~ 301 (830)
T PRK12904 222 LIISGPAEDSSELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGIENLYDPENIALVHHLNQALRAHELF 301 (830)
T ss_pred eeeECCCCcccHHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCCccccChhhhHHHHHHHHHHHHHHHH
Confidence 11223333333333110 0
Q ss_pred -----------------------------------------------------------------eEEEEeccCCccHHH
Q psy1548 290 -----------------------------------------------------------------QVMMFSATLSKEIRP 304 (448)
Q Consensus 290 -----------------------------------------------------------------q~i~~SAT~~~~~~~ 304 (448)
++.+||.|...+..+
T Consensus 302 ~~d~dYiV~dg~V~ivDe~TGR~~~gr~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E 381 (830)
T PRK12904 302 KRDVDYIVKDGEVVIVDEFTGRLMPGRRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEE 381 (830)
T ss_pred hcCCcEEEECCEEEEEECCCCccCCCCccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHH
Confidence 224444444433333
Q ss_pred HHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 305 ~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
+...|.-+-+.| ++. ......-....+.....+|..++...+.. ..+.++||||+|++.++.++..|.+.|+++.
T Consensus 382 ~~~iY~l~vv~I--Ptn-kp~~r~d~~d~i~~t~~~K~~aI~~~I~~~~~~grpVLIft~Si~~se~Ls~~L~~~gi~~~ 458 (830)
T PRK12904 382 FREIYNLDVVVI--PTN-RPMIRIDHPDLIYKTEKEKFDAVVEDIKERHKKGQPVLVGTVSIEKSELLSKLLKKAGIPHN 458 (830)
T ss_pred HHHHhCCCEEEc--CCC-CCeeeeeCCCeEEECHHHHHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHCCCceE
Confidence 333332221111 111 10000001123444566799999998865 4667999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
.+|+. +.+|...+..|+.++ ..|+++|+
T Consensus 459 vLnak--q~eREa~Iia~Ag~~--g~VtIATN 486 (830)
T PRK12904 459 VLNAK--NHEREAEIIAQAGRP--GAVTIATN 486 (830)
T ss_pred eccCc--hHHHHHHHHHhcCCC--ceEEEecc
Confidence 99996 889999999998877 25666655
No 92
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.83 E-value=2.6e-19 Score=181.58 Aligned_cols=262 Identities=21% Similarity=0.221 Sum_probs=185.5
Q ss_pred CCCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
.|+.+-..|+. ++..+... .+-|++|.-|||||++++++++..+. .|.++..++||.-||.|-+.
T Consensus 259 LPF~LT~aQ~~------vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~---~G~Q~ALMAPTEILA~QH~~ 329 (677)
T COG1200 259 LPFKLTNAQKR------VIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE---AGYQAALMAPTEILAEQHYE 329 (677)
T ss_pred CCCCccHHHHH------HHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH---cCCeeEEeccHHHHHHHHHH
Confidence 45555566888 77766653 57899999999999999999998875 45689999999999999999
Q ss_pred HHHHhhccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH
Q psy1548 199 EYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 275 (448)
.+.++...+ ++++..++|....... ...+.++..+|+|||.. +-.+...++++.++|+||-|+..-
T Consensus 330 ~~~~~l~~~-~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHA-----LiQd~V~F~~LgLVIiDEQHRFGV----- 398 (677)
T COG1200 330 SLRKWLEPL-GIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHA-----LIQDKVEFHNLGLVIIDEQHRFGV----- 398 (677)
T ss_pred HHHHHhhhc-CCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcch-----hhhcceeecceeEEEEeccccccH-----
Confidence 999999988 8999999998765443 44567788999999975 334566789999999999996533
Q ss_pred HHHHHHHHhCCC-CCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHh-hC-
Q psy1548 276 RDVQEIFRSSPH-TKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLD-VL- 352 (448)
Q Consensus 276 ~~~~~i~~~l~~-~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~- 352 (448)
.-+..+..... ...++.||||.-+....+. ...+-. +.+-++--.-...|..+.+.. +.+ ..+++.++ ..
T Consensus 399 -~QR~~L~~KG~~~Ph~LvMTATPIPRTLAlt--~fgDld-vS~IdElP~GRkpI~T~~i~~--~~~-~~v~e~i~~ei~ 471 (677)
T COG1200 399 -HQRLALREKGEQNPHVLVMTATPIPRTLALT--AFGDLD-VSIIDELPPGRKPITTVVIPH--ERR-PEVYERIREEIA 471 (677)
T ss_pred -HHHHHHHHhCCCCCcEEEEeCCCchHHHHHH--Hhcccc-chhhccCCCCCCceEEEEecc--ccH-HHHHHHHHHHHH
Confidence 23333444444 5678999999766544433 232221 222222011122344444332 222 22333332 22
Q ss_pred CCCeEEEEECccH--------HHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 353 EFNQVVIFVKSVT--------RCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 353 ~~~~~IIF~~s~~--------~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
.+.++.+.|+-.+ .|+.+++.|+.. ++++..+||.|+.+++.+++++|++|+ +.|+++|+-
T Consensus 472 ~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~Fk~~e--~~ILVaTTV 542 (677)
T COG1200 472 KGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAFKEGE--IDILVATTV 542 (677)
T ss_pred cCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHHHcCC--CcEEEEeeE
Confidence 5678999998654 456677777754 677999999999999999999999998 577777764
No 93
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.82 E-value=1.5e-18 Score=190.86 Aligned_cols=264 Identities=16% Similarity=0.206 Sum_probs=171.8
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|...-|+..+..+ .+..+..+..++++|+||||||.. +|.+..-.......++++.-|.|--|..+...+..
T Consensus 62 ~~~~LPi~~~~~~------Il~~l~~~~vvii~g~TGSGKTTq--lPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~ 133 (1283)
T TIGR01967 62 YPDNLPVSAKRED------IAEAIAENQVVIIAGETGSGKTTQ--LPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAE 133 (1283)
T ss_pred CCCCCCHHHHHHH------HHHHHHhCceEEEeCCCCCCcHHH--HHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHH
Confidence 5555677555556 555665667889999999999984 56544322212223566667888777766655544
Q ss_pred hhccCCCceEEEEEcCc-ccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchh-HHHhhhhhHHH-HH
Q psy1548 203 FSKYMSNIKVGVFFGGL-PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD-KMLEQLEMRRD-VQ 279 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~-~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah-~l~~~~~~~~~-~~ 279 (448)
-. +..++...|.. ....+. . ...+|.|+|+|.|+..+..+. .+.++++||||||| ++++. ++.-. +.
T Consensus 134 el----g~~lG~~VGY~vR~~~~~---s-~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~-D~LL~lLk 203 (1283)
T TIGR01967 134 EL----GTPLGEKVGYKVRFHDQV---S-SNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNI-DFLLGYLK 203 (1283)
T ss_pred Hh----CCCcceEEeeEEcCCccc---C-CCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccc-hhHHHHHH
Confidence 33 34444444431 111111 1 237899999999999887654 37899999999999 47775 66554 55
Q ss_pred HHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCc------chHHHHHHHHHhh--
Q psy1548 280 EIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE------NEKNKKLFELLDV-- 351 (448)
Q Consensus 280 ~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~------~~k~~~L~~ll~~-- 351 (448)
.++... ++.|+|+||||++. ..+.+.|...|. +.+... ...+..+|..... .++...+...+..
T Consensus 204 ~il~~r-pdLKlIlmSATld~--~~fa~~F~~apv-I~V~Gr----~~PVev~Y~~~~~~~~~~~~~~~~~i~~~I~~l~ 275 (1283)
T TIGR01967 204 QLLPRR-PDLKIIITSATIDP--ERFSRHFNNAPI-IEVSGR----TYPVEVRYRPLVEEQEDDDLDQLEAILDAVDELF 275 (1283)
T ss_pred HHHhhC-CCCeEEEEeCCcCH--HHHHHHhcCCCE-EEECCC----cccceeEEecccccccchhhhHHHHHHHHHHHHH
Confidence 554443 57899999999964 466666655554 443322 1234445543322 1233334333332
Q ss_pred -CCCCeEEEEECccHHHHHHHHHHHhCC---CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 352 -LEFNQVVIFVKSVTRCIALSTLLSEQN---FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 352 -~~~~~~IIF~~s~~~a~~l~~~L~~~g---~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
...+.+|||+++..+++.+++.|++.+ +.+..+||+|++++|.++++.+ .+..|.++|+-.
T Consensus 276 ~~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~----~~rkIVLATNIA 340 (1283)
T TIGR01967 276 AEGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH----SGRRIVLATNVA 340 (1283)
T ss_pred hhCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC----CCceEEEeccHH
Confidence 245789999999999999999999864 4588999999999999986543 234677777653
No 94
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=99.82 E-value=6.8e-19 Score=190.12 Aligned_cols=304 Identities=17% Similarity=0.155 Sum_probs=187.6
Q ss_pred chhhhhhhccccccceeeee--CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 129 SDTYLHRVARAGRFGTKAVL--GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~--g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
+.+||.. ....++. ...+|+...+|.|||..+.+.+...+..+ ...++|||||. .|..||..++.+..
T Consensus 153 l~pHQl~------~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~~g-~~~rvLIVvP~-sL~~QW~~El~~kF-- 222 (956)
T PRK04914 153 LIPHQLY------IAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLLTG-RAERVLILVPE-TLQHQWLVEMLRRF-- 222 (956)
T ss_pred CCHHHHH------HHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHHcC-CCCcEEEEcCH-HHHHHHHHHHHHHh--
Confidence 3455888 4333332 35789999999999988766555444433 33489999998 79999988886543
Q ss_pred CCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHH-CCCCcCCCeeEEEecchhHHHhhh-hhHHHHHHH
Q psy1548 207 MSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVR-NKKLNLSLLKHFILDECDKMLEQL-EMRRDVQEI 281 (448)
Q Consensus 207 ~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~-~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~~i 281 (448)
++.+.++.++...... ...+. ..+++|+|.+.+...-. ...+.-...+++|+||||++-... .-...+..+
T Consensus 223 --~l~~~i~~~~~~~~~~~~~~~pf~--~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~~v 298 (956)
T PRK04914 223 --NLRFSLFDEERYAEAQHDADNPFE--TEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQVV 298 (956)
T ss_pred --CCCeEEEcCcchhhhcccccCccc--cCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHHHH
Confidence 4444444333211000 00011 25799999887754110 011222467899999999985210 011112222
Q ss_pred HHhCCCCCeEEEEeccCCc-c------------------HHHHH------------------------------HHhcCC
Q psy1548 282 FRSSPHTKQVMMFSATLSK-E------------------IRPVC------------------------------KKFMHD 312 (448)
Q Consensus 282 ~~~l~~~~q~i~~SAT~~~-~------------------~~~~~------------------------------~~~l~~ 312 (448)
.........++++|||+-. . ...+. ..++++
T Consensus 299 ~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll~~ 378 (956)
T PRK04914 299 EQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELLGE 378 (956)
T ss_pred HHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHhcc
Confidence 2222233468999999421 0 00110 011100
Q ss_pred C---------------------------------eEEEEcCcc----cccccceeEEEE---------------------
Q psy1548 313 P---------------------------------MEVYVDDEA----KLTLHGLQQHYV--------------------- 334 (448)
Q Consensus 313 ~---------------------------------~~i~~~~~~----~~~~~~i~~~~~--------------------- 334 (448)
. ..+...... ......+....+
T Consensus 379 ~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y~~~~~~~~~~~~~~~ 458 (956)
T PRK04914 379 QDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQYQTAIKVSLEARARDM 458 (956)
T ss_pred cchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHHHHHHHHhHHHHHHhh
Confidence 0 000000000 000000000000
Q ss_pred ---------------EcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCCCHHHHHHHHH
Q psy1548 335 ---------------KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLS-EQNFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 335 ---------------~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~-~~g~~~~~lh~~~~~~eR~~~l~ 398 (448)
+...+.|...|.++++.....|+||||+++..+..+++.|+ +.|+++..+||+|++.+|.++++
T Consensus 459 l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~eR~~~~~ 538 (956)
T PRK04914 459 LYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSHRSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIERDRAAA 538 (956)
T ss_pred cCHHHHHHHHhhhhhccccCHHHHHHHHHHHhcCCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHHHHHHHH
Confidence 11223467788888888778899999999999999999994 56999999999999999999999
Q ss_pred HHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 399 EFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 399 ~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.|++++.+..|+++|+..-++. +++..-.+-..++|.+.+.+++++||
T Consensus 539 ~F~~~~~~~~VLIsTdvgseGl--Nlq~a~~VInfDlP~nP~~~eQRIGR 586 (956)
T PRK04914 539 YFADEEDGAQVLLCSEIGSEGR--NFQFASHLVLFDLPFNPDLLEQRIGR 586 (956)
T ss_pred HHhcCCCCccEEEechhhccCC--CcccccEEEEecCCCCHHHHHHHhcc
Confidence 9999877788888887644443 56766677888999999999999998
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.82 E-value=2.6e-18 Score=176.56 Aligned_cols=233 Identities=19% Similarity=0.201 Sum_probs=149.8
Q ss_pred eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh---HHHHh
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYLK 229 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~ 229 (448)
|+.||||||||.+|+..+...+.. +.++||++|+++|+.|+.+.+++.. +.++..++|+.+..+. +..+.
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~---g~~vLvlvP~i~L~~Q~~~~l~~~f----~~~v~vlhs~~~~~er~~~~~~~~ 73 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLAL---GKSVLVLVPEIALTPQMIQRFKYRF----GSQVAVLHSGLSDSEKLQAWRKVK 73 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHHHHHHHh----CCcEEEEECCCCHHHHHHHHHHHH
Confidence 578999999999997665554432 4489999999999999998888754 5667788887765443 33445
Q ss_pred cCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhh--h--h-HHHHHHHHHhCCCCCeEEEEeccCCccHHH
Q psy1548 230 THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL--E--M-RRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~--~--~-~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~ 304 (448)
.+.++|+|||+..+. ..++++++|||||.|...-+. . + ..++. +++....+.+++++|||.+.+...
T Consensus 74 ~g~~~IVVGTrsalf-------~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a-~~ra~~~~~~vil~SATPsles~~ 145 (505)
T TIGR00595 74 NGEILVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVA-VYRAKKFNCPVVLGSATPSLESYH 145 (505)
T ss_pred cCCCCEEECChHHHc-------CcccCCCEEEEECCCccccccccCCCCcHHHHH-HHHHHhcCCCEEEEeCCCCHHHHH
Confidence 566899999998663 347889999999999764320 1 1 11222 233334578899999996644333
Q ss_pred HHHHhcCCCeEEEEcCcc-cccccceeEEEEEcCcch----HHHHHHHHHhh-C-CCCeEEEEECccHH-----------
Q psy1548 305 VCKKFMHDPMEVYVDDEA-KLTLHGLQQHYVKLKENE----KNKKLFELLDV-L-EFNQVVIFVKSVTR----------- 366 (448)
Q Consensus 305 ~~~~~l~~~~~i~~~~~~-~~~~~~i~~~~~~~~~~~----k~~~L~~ll~~-~-~~~~~IIF~~s~~~----------- 366 (448)
.+. .+....+...... ....+.+ .++...... -...+.+.++. . .++++|||+|++..
T Consensus 146 ~~~--~g~~~~~~l~~r~~~~~~p~v--~vid~~~~~~~~~ls~~l~~~i~~~l~~g~qvLvflnrrGya~~~~C~~Cg~ 221 (505)
T TIGR00595 146 NAK--QKAYRLLVLTRRVSGRKPPEV--KLIDMRKEPRQSFLSPELITAIEQTLAAGEQSILFLNRRGYSKNLLCRSCGY 221 (505)
T ss_pred HHh--cCCeEEeechhhhcCCCCCeE--EEEecccccccCCccHHHHHHHHHHHHcCCcEEEEEeCCcCCCeeEhhhCcC
Confidence 322 1222222221110 1111111 122222111 11223333322 2 35689999887653
Q ss_pred -------------------------------------------------HHHHHHHHHhC--CCcEEEEeCCCCHHHH--
Q psy1548 367 -------------------------------------------------CIALSTLLSEQ--NFPAVSIHRGMTQEER-- 393 (448)
Q Consensus 367 -------------------------------------------------a~~l~~~L~~~--g~~~~~lh~~~~~~eR-- 393 (448)
++++++.|++. +.++..+|++++..++
T Consensus 222 ~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~~e~l~~~fp~~~v~~~d~d~~~~~~~~ 301 (505)
T TIGR00595 222 ILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQVEEELAKLFPGARIARIDSDTTSRKGAH 301 (505)
T ss_pred ccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHHHHHHHhhCCCCcEEEEecccccCccHH
Confidence 58888888886 7899999999987766
Q ss_pred HHHHHHHhcCC
Q psy1548 394 LKKYQEFKDFH 404 (448)
Q Consensus 394 ~~~l~~F~~g~ 404 (448)
.+++++|++|+
T Consensus 302 ~~~l~~f~~g~ 312 (505)
T TIGR00595 302 EALLNQFANGK 312 (505)
T ss_pred HHHHHHHhcCC
Confidence 89999999987
No 96
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.81 E-value=2e-18 Score=155.88 Aligned_cols=186 Identities=28% Similarity=0.441 Sum_probs=148.9
Q ss_pred ccCCCCchhhhhhhccccccceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
+..|++. |.+ +++.+..+ +++++.+|||+|||.+++.+++..+.... ..++++++|+..++.|+...+.
T Consensus 6 ~~~~~~~---Q~~------~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~~~~-~~~~l~~~p~~~~~~~~~~~~~ 75 (201)
T smart00487 6 FEPLRPY---QKE------AIEALLSGLRDVILAAPTGSGKTLAALLPALEALKRGK-GKRVLVLVPTRELAEQWAEELK 75 (201)
T ss_pred CCCCCHH---HHH------HHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhcccC-CCcEEEEeCCHHHHHHHHHHHH
Confidence 4455555 999 99998888 99999999999999999999988776543 3479999999999999999998
Q ss_pred HhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHH
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i 281 (448)
.+.... ........++.........+..+..+++++|++.+.+.+.........++++|+||+|.+... .+...+..+
T Consensus 76 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~ 153 (201)
T smart00487 76 KLGPSL-GLKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKL 153 (201)
T ss_pred HHhccC-CeEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHH
Confidence 887654 323444455544344445555553499999999999999887777788999999999999875 678888888
Q ss_pred HHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcC
Q psy1548 282 FRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320 (448)
Q Consensus 282 ~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~ 320 (448)
+..+++..+++++|||+++........+..+...+....
T Consensus 154 ~~~~~~~~~~v~~saT~~~~~~~~~~~~~~~~~~~~~~~ 192 (201)
T smart00487 154 LKLLPKNVQLLLLSATPPEEIENLLELFLNDPVFIDVGP 192 (201)
T ss_pred HHhCCccceEEEEecCCchhHHHHHHHhcCCCEEEeCCc
Confidence 888888899999999999998888888888666665443
No 97
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=3.9e-18 Score=179.38 Aligned_cols=129 Identities=21% Similarity=0.225 Sum_probs=101.9
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |-. ..-.+..| -|..++||.|||+++.+|++.....+. .+.||+|+..||.+..+++..+.
T Consensus 82 ~~ydV---Qli------Ggl~L~~G--~IaEm~TGEGKTL~a~lp~~l~al~g~---~VhIvT~ndyLA~RD~e~m~~l~ 147 (908)
T PRK13107 82 RHFDV---QLL------GGMVLDSN--RIAEMRTGEGKTLTATLPAYLNALTGK---GVHVITVNDYLARRDAENNRPLF 147 (908)
T ss_pred CcCch---HHh------cchHhcCC--ccccccCCCCchHHHHHHHHHHHhcCC---CEEEEeCCHHHHHHHHHHHHHHH
Confidence 56777 877 22233334 488999999999999999987765443 49999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC-CCcC-----CCeeEEEecchhHHHhh
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK-KLNL-----SLLKHFILDECDKMLEQ 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~-~~~~-----~~i~~lViDEah~l~~~ 271 (448)
..+ +++++++.++.+.... .....++|++|||+.+ .++|+.+ .+.. ..+.++|+||+|.++-+
T Consensus 148 ~~l-Glsv~~i~~~~~~~~r---~~~Y~~dI~YgT~~e~gfDyLrdnm~~~~~~~vqr~~~~aIvDEvDsiLiD 217 (908)
T PRK13107 148 EFL-GLTVGINVAGLGQQEK---KAAYNADITYGTNNEFGFDYLRDNMAFSPQERVQRPLHYALIDEVDSILID 217 (908)
T ss_pred Hhc-CCeEEEecCCCCHHHH---HhcCCCCeEEeCCCcccchhhhccCccchhhhhccccceeeecchhhhccc
Confidence 998 9999999998775332 2333489999999999 8888765 3333 77889999999987644
No 98
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.76 E-value=3.8e-18 Score=183.03 Aligned_cols=281 Identities=20% Similarity=0.219 Sum_probs=170.9
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHH--
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY-- 227 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~-- 227 (448)
.+++.||||+|||.+.+.+++..+.. .....+++++.|++.+++++++.++.+.... .+......|..........
T Consensus 216 ~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~-~~~~~~~h~~~~~~~~~~~~~ 294 (733)
T COG1203 216 LVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLF-SVIGKSLHSSSKEPLLLEPDQ 294 (733)
T ss_pred cEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhccc-ccccccccccccchhhhcccc
Confidence 88999999999999999999887766 3456799999999999999999999877654 3322212222221110000
Q ss_pred -----------HhcCCCcEEEEcHHHHHHHHH-CCCCc-C--CCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeE
Q psy1548 228 -----------LKTHNPQIVVGTPGRILALVR-NKKLN-L--SLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQV 291 (448)
Q Consensus 228 -----------l~~~~~~IlV~Tp~~l~~~l~-~~~~~-~--~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~ 291 (448)
....-..+.++||..+..... ..... + -....+|+||+|.+.+. .....+..++..+. .+..+
T Consensus 295 ~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~S~vIlDE~h~~~~~-~~~~~l~~~i~~l~~~g~~i 373 (733)
T COG1203 295 DILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGFKFEFLALLLTSLVILDEVHLYADE-TMLAALLALLEALAEAGVPV 373 (733)
T ss_pred ccceeEEecccccceeccccccCHhHhhhhhccccchHHHHHHHhhchhhccHHhhccc-chHHHHHHHHHHHHhCCCCE
Confidence 000113455556655444211 11111 1 11246999999987664 24555555544443 36789
Q ss_pred EEEeccCCccHHHHHHHhcCCCeEEEEcCcc--cccccceeEEEEE-cCcchHHHHHHHHH-hhCCCCeEEEEECccHHH
Q psy1548 292 MMFSATLSKEIRPVCKKFMHDPMEVYVDDEA--KLTLHGLQQHYVK-LKENEKNKKLFELL-DVLEFNQVVIFVKSVTRC 367 (448)
Q Consensus 292 i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~--~~~~~~i~~~~~~-~~~~~k~~~L~~ll-~~~~~~~~IIF~~s~~~a 367 (448)
+++|||+|+..++.+...+.....+...... ......+.+.... .............. ....+++++|.|||+..|
T Consensus 374 ll~SATlP~~~~~~l~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kvlvI~NTV~~A 453 (733)
T COG1203 374 LLMSATLPPFLKEKLKKALGKGREVVENAKFCPKEDEPGLKRKERVDVEDGPQEELIELISEEVKEGKKVLVIVNTVDRA 453 (733)
T ss_pred EEEecCCCHHHHHHHHHHHhcccceeccccccccccccccccccchhhhhhhhHhhhhcchhhhccCCcEEEEEecHHHH
Confidence 9999999999999888877655544432110 0000111111000 00000001111111 223467999999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC--CCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccc
Q psy1548 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF--HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 368 ~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g--~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~ 441 (448)
..++..|+..+.++.++||.++..+|.+.++++++- ..+-.|.++|. -||..+++...-+.+++.+
T Consensus 454 ie~Y~~Lk~~~~~v~LlHSRf~~~dR~~ke~~l~~~~~~~~~~IvVaTQ--------VIEagvDidfd~mITe~aP 521 (733)
T COG1203 454 IELYEKLKEKGPKVLLLHSRFTLKDREEKERELKKLFKQNEGFIVVATQ--------VIEAGVDIDFDVLITELAP 521 (733)
T ss_pred HHHHHHHHhcCCCEEEEecccchhhHHHHHHHHHHHHhccCCeEEEEee--------EEEEEeccccCeeeecCCC
Confidence 999999999887899999999999999999977752 22224444443 3444555555555555443
No 99
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.76 E-value=1.1e-17 Score=184.45 Aligned_cols=264 Identities=14% Similarity=0.175 Sum_probs=153.1
Q ss_pred CCchhhhhhhccccccceeee----eC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 127 EDSDTYLHRVARAGRFGTKAV----LG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~~----~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
...++||.+ ++..+. .| +.++++++||||||.+++ .++..+.......++|+|+|+++|+.|+.+.++
T Consensus 412 ~~lR~YQ~~------AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai-~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~ 484 (1123)
T PRK11448 412 LGLRYYQED------AIQAVEKAIVEGQREILLAMATGTGKTRTAI-ALMYRLLKAKRFRRILFLVDRSALGEQAEDAFK 484 (1123)
T ss_pred CCCCHHHHH------HHHHHHHHHHhccCCeEEEeCCCCCHHHHHH-HHHHHHHhcCccCeEEEEecHHHHHHHHHHHHH
Confidence 356889999 665554 33 679999999999998854 344444444445699999999999999999888
Q ss_pred HhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC-----CCCcCCCeeEEEecchhHHHhh-----
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN-----KKLNLSLLKHFILDECDKMLEQ----- 271 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~-----~~~~~~~i~~lViDEah~l~~~----- 271 (448)
.+.... ......+++..... ........+|+|+|.+++...+.. ....+.++++||+||||+-...
T Consensus 485 ~~~~~~-~~~~~~i~~i~~L~---~~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~ 560 (1123)
T PRK11448 485 DTKIEG-DQTFASIYDIKGLE---DKFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMS 560 (1123)
T ss_pred hccccc-ccchhhhhchhhhh---hhcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccc
Confidence 764221 11111112111101 111122368999999999876532 1245678899999999985310
Q ss_pred ---------hhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH--------------HhcCC---CeEEEEcCccc-c
Q psy1548 272 ---------LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK--------------KFMHD---PMEVYVDDEAK-L 324 (448)
Q Consensus 272 ---------~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~--------------~~l~~---~~~i~~~~~~~-~ 324 (448)
.++...+..++.++. ...|+||||+......+.. .++.+ |..+...-... .
T Consensus 561 ~~~~~~~~~~~~~~~yr~iL~yFd--A~~IGLTATP~r~t~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi 638 (1123)
T PRK11448 561 EGELQFRDQLDYVSKYRRVLDYFD--AVKIGLTATPALHTTEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGI 638 (1123)
T ss_pred cchhccchhhhHHHHHHHHHhhcC--ccEEEEecCCccchhHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEeccccc
Confidence 022456777777553 4579999998643322111 11110 12221100000 0
Q ss_pred cccc------eeE---EE--EEcCcc--------h-------HH----HHHHHHHhhCCCCeEEEEECccHHHHHHHHHH
Q psy1548 325 TLHG------LQQ---HY--VKLKEN--------E-------KN----KKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374 (448)
Q Consensus 325 ~~~~------i~~---~~--~~~~~~--------~-------k~----~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L 374 (448)
.... +.. .+ ...+.. + .. ..+...+....++++||||.++.+|+.+++.|
T Consensus 639 ~~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L 718 (1123)
T PRK11448 639 HFEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLL 718 (1123)
T ss_pred cccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHH
Confidence 0000 000 00 000000 0 00 11122222223479999999999999999887
Q ss_pred HhC------CC---cEEEEeCCCCHHHHHHHHHHHhcCCC
Q psy1548 375 SEQ------NF---PAVSIHRGMTQEERLKKYQEFKDFHK 405 (448)
Q Consensus 375 ~~~------g~---~~~~lh~~~~~~eR~~~l~~F~~g~~ 405 (448)
.+. +. .+..+||+++ ++.+++++|++++.
T Consensus 719 ~~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~ 756 (1123)
T PRK11448 719 KEAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERL 756 (1123)
T ss_pred HHHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCC
Confidence 653 22 4567899975 46789999999764
No 100
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.75 E-value=1.9e-16 Score=169.20 Aligned_cols=254 Identities=19% Similarity=0.142 Sum_probs=196.7
Q ss_pred hhhhccccccceeeee----C--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 133 LHRVARAGRFGTKAVL----G--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~----g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
|.. +|..+.. + .|-|+||.-|.|||.+++=++...+. .|.++.+++||.-||+|-++.|+.=...
T Consensus 599 Ql~------AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~---~GKQVAvLVPTTlLA~QHy~tFkeRF~~ 669 (1139)
T COG1197 599 QLK------AIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVM---DGKQVAVLVPTTLLAQQHYETFKERFAG 669 (1139)
T ss_pred HHH------HHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhc---CCCeEEEEcccHHhHHHHHHHHHHHhcC
Confidence 777 7766554 3 58999999999999998888776654 3469999999999999988888877777
Q ss_pred CCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 207 MSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 207 ~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
+ .+++..+..-.+..++ ...+..|..||+|||.. +-++.+.++++.++||||=|+ |+-.-++-++
T Consensus 670 f-PV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHr-----LL~kdv~FkdLGLlIIDEEqR------FGVk~KEkLK 737 (1139)
T COG1197 670 F-PVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHR-----LLSKDVKFKDLGLLIIDEEQR------FGVKHKEKLK 737 (1139)
T ss_pred C-CeeEEEecccCCHHHHHHHHHHHhcCCccEEEechH-----hhCCCcEEecCCeEEEechhh------cCccHHHHHH
Confidence 7 6888888766554544 44567889999999973 334567789999999999995 4444566777
Q ss_pred hCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEEC
Q psy1548 284 SSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVK 362 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~ 362 (448)
.+..++-++-+|||.-+....+....+++-..|...+.+. ..++.++...++.- +...+.++. ++|++-..+|
T Consensus 738 ~Lr~~VDvLTLSATPIPRTL~Msm~GiRdlSvI~TPP~~R---~pV~T~V~~~d~~~ireAI~REl~---RgGQvfYv~N 811 (1139)
T COG1197 738 ELRANVDVLTLSATPIPRTLNMSLSGIRDLSVIATPPEDR---LPVKTFVSEYDDLLIREAILRELL---RGGQVFYVHN 811 (1139)
T ss_pred HHhccCcEEEeeCCCCcchHHHHHhcchhhhhccCCCCCC---cceEEEEecCChHHHHHHHHHHHh---cCCEEEEEec
Confidence 7778889999999998888888888888777777666633 23444433333322 233333333 4789999999
Q ss_pred ccHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 363 SVTRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 363 s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
.++..+.++..|++. ...+...||.|+..+-.+++.+|-+|+ -.|++||+-
T Consensus 812 rV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~--~dVLv~TTI 864 (1139)
T COG1197 812 RVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGE--YDVLVCTTI 864 (1139)
T ss_pred chhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCC--CCEEEEeee
Confidence 999999999999986 567899999999999999999999998 477777774
No 101
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.71 E-value=1.9e-15 Score=157.97 Aligned_cols=262 Identities=19% Similarity=0.243 Sum_probs=177.9
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|++. |.. ....+..|++.-+.||||.|||..-++..+... ..+.++++++||..|+.|+++.+.++.
T Consensus 82 ~~ws~---QR~------WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a---~kgkr~yii~PT~~Lv~Q~~~kl~~~~ 149 (1187)
T COG1110 82 RPWSA---QRV------WAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA---KKGKRVYIIVPTTTLVRQVYERLKKFA 149 (1187)
T ss_pred CchHH---HHH------HHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH---hcCCeEEEEecCHHHHHHHHHHHHHHH
Confidence 77777 888 667789999999999999999955443333322 234699999999999999999999998
Q ss_pred ccCCCceEEE-EEcCcccHH---hHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh---------
Q psy1548 205 KYMSNIKVGV-FFGGLPIQK---DEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ--------- 271 (448)
Q Consensus 205 ~~~~~~~v~~-~~g~~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~--------- 271 (448)
.......+.. .++..+... -...+.++..||+|+|.+-|...... +.-.+++++++|++|.++..
T Consensus 150 e~~~~~~~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~~e~--L~~~kFdfifVDDVDA~LkaskNvDriL~ 227 (1187)
T COG1110 150 EDAGSLDVLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKRFEE--LSKLKFDFIFVDDVDAILKASKNVDRLLR 227 (1187)
T ss_pred hhcCCcceeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhhHHH--hcccCCCEEEEccHHHHHhccccHHHHHH
Confidence 7652244444 334333332 34556778899999999877654432 11245788999999977654
Q ss_pred -hhhHHH-------HHHHHHhC------------------------CCCCeEEEEeccCCccH--HHHHHHhcCCCeEEE
Q psy1548 272 -LEMRRD-------VQEIFRSS------------------------PHTKQVMMFSATLSKEI--RPVCKKFMHDPMEVY 317 (448)
Q Consensus 272 -~~~~~~-------~~~i~~~l------------------------~~~~q~i~~SAT~~~~~--~~~~~~~l~~~~~i~ 317 (448)
.||... +..+...+ .+..+++..|||..+.- ..+.+.++.-.
T Consensus 228 LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFe---- 303 (1187)
T COG1110 228 LLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFE---- 303 (1187)
T ss_pred HcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCc----
Confidence 122211 11111111 12358899999986542 23455555421
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECc---cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKS---VTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s---~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
+... .....||...|...+ -...+.++++.... -.|||++. ++.|+.+++.|+++|+++..+|+. ..
T Consensus 304 vG~~-~~~LRNIvD~y~~~~---~~e~~~elvk~lG~-GgLIfV~~d~G~e~aeel~e~Lr~~Gi~a~~~~a~-----~~ 373 (1187)
T COG1110 304 VGSG-GEGLRNIVDIYVESE---SLEKVVELVKKLGD-GGLIFVPIDYGREKAEELAEYLRSHGINAELIHAE-----KE 373 (1187)
T ss_pred cCcc-chhhhheeeeeccCc---cHHHHHHHHHHhCC-CeEEEEEcHHhHHHHHHHHHHHHhcCceEEEeecc-----ch
Confidence 1111 334567777776653 34445666666644 48999999 899999999999999999999994 37
Q ss_pred HHHHHHhcCCCceEEEEecC
Q psy1548 395 KKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 395 ~~l~~F~~g~~g~~I~~~t~ 414 (448)
+.++.|.+|+-.+.|-+++-
T Consensus 374 ~~le~F~~GeidvLVGvAsy 393 (1187)
T COG1110 374 EALEDFEEGEVDVLVGVASY 393 (1187)
T ss_pred hhhhhhccCceeEEEEeccc
Confidence 89999999996555555554
No 102
>KOG0950|consensus
Probab=99.69 E-value=3e-16 Score=163.09 Aligned_cols=260 Identities=17% Similarity=0.239 Sum_probs=178.2
Q ss_pred hhhhhhhccccccc--eeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 130 DTYLHRVARAGRFG--TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~--~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
.++|.+ |+ |.++.++|.+..+||+.|||+++-+-++..+....+ .++.+.|..+.++.-...+..+...+
T Consensus 225 fewq~e------cls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~~rr--~~llilp~vsiv~Ek~~~l~~~~~~~ 296 (1008)
T KOG0950|consen 225 FEWQAE------CLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLCRRR--NVLLILPYVSIVQEKISALSPFSIDL 296 (1008)
T ss_pred HHHHHH------HhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHHHhh--ceeEecceeehhHHHHhhhhhhcccc
Confidence 556888 76 677889999999999999999999988887655433 58899999999988888888888887
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC--CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN--KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
++.+...+|..+...... .-++.|+|.++-..+++. ..-.+..+.++|+||.|.+.+. +....++.++..+
T Consensus 297 -G~~ve~y~g~~~p~~~~k-----~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~-~rg~~lE~~l~k~ 369 (1008)
T KOG0950|consen 297 -GFPVEEYAGRFPPEKRRK-----RESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDK-GRGAILELLLAKI 369 (1008)
T ss_pred -CCcchhhcccCCCCCccc-----ceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeecc-ccchHHHHHHHHH
Confidence 889888887766543321 257999999998766644 2334667889999999988887 7777777776543
Q ss_pred -----CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEE----EEcCcchHHHHHHHH--------
Q psy1548 286 -----PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHY----VKLKENEKNKKLFEL-------- 348 (448)
Q Consensus 286 -----~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~----~~~~~~~k~~~L~~l-------- 348 (448)
....|+|+||||+++. .++..|+.... +.... .+..+..+. ...... +...+..+
T Consensus 370 ~y~~~~~~~~iIGMSATi~N~--~lL~~~L~A~~--y~t~f---RPv~L~E~ik~G~~i~~~~-r~~~lr~ia~l~~~~~ 441 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPNN--SLLQDWLDAFV--YTTRF---RPVPLKEYIKPGSLIYESS-RNKVLREIANLYSSNL 441 (1008)
T ss_pred HHhccccceeEeeeecccCCh--HHHHHHhhhhh--eeccc---CcccchhccCCCcccccch-hhHHHHHhhhhhhhhc
Confidence 2346899999999875 33333332111 11000 011111110 000000 22222222
Q ss_pred -----------HhhC--CCCeEEEEECccHHHHHHHHHHHhC--------------------------------------
Q psy1548 349 -----------LDVL--EFNQVVIFVKSVTRCIALSTLLSEQ-------------------------------------- 377 (448)
Q Consensus 349 -----------l~~~--~~~~~IIF~~s~~~a~~l~~~L~~~-------------------------------------- 377 (448)
+... .+.++||||++++.|+.+|..+...
T Consensus 442 g~~dpD~~v~L~tet~~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti 521 (1008)
T KOG0950|consen 442 GDEDPDHLVGLCTETAPEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTI 521 (1008)
T ss_pred ccCCCcceeeehhhhhhcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheec
Confidence 2111 2446999999999999999665321
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 378 g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
.+.+.++|+|++.++|..+...|++|. +.|..+|+
T Consensus 522 ~~GvAyHhaGLT~eER~~iE~afr~g~--i~vl~aTS 556 (1008)
T KOG0950|consen 522 PYGVAYHHAGLTSEEREIIEAAFREGN--IFVLVATS 556 (1008)
T ss_pred cccceecccccccchHHHHHHHHHhcC--eEEEEecc
Confidence 113889999999999999999999988 45555554
No 103
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.69 E-value=1.4e-15 Score=129.15 Aligned_cols=144 Identities=38% Similarity=0.533 Sum_probs=107.2
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
+++++.+|||+|||.+++..+....... ...++++++|++.++.|+.+.+..+... ...+..+.+...........
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~-~~~~~lv~~p~~~l~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~- 76 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSL-KGGQVLVLAPTRELANQVAERLKELFGE--GIKVGYLIGGTSIKQQEKLL- 76 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcc-cCCCEEEEcCcHHHHHHHHHHHHHHhhC--CcEEEEEecCcchhHHHHHh-
Confidence 4689999999999999888887766542 3458999999999999999988887643 35666666665444333222
Q ss_pred cCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccC
Q psy1548 230 THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~ 298 (448)
....+|+++|++.+..............+++|+||+|.+... .................+++++|||+
T Consensus 77 ~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~-~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 77 SGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQ-GFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred cCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhc-chHHHHHHHHhhCCccceEEEEeccC
Confidence 335899999999998887766555667889999999988775 33333223344456778899999995
No 104
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=6.8e-16 Score=162.28 Aligned_cols=299 Identities=16% Similarity=0.161 Sum_probs=193.8
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |.. ..-.+..|+ |....||+|||+++.+|++.....+ ..+-+++|+.-||.|=++.+..+.
T Consensus 80 ~~~dv---Qli------g~l~l~~G~--iaEm~TGEGKTLvA~l~a~l~al~G---~~v~vvT~neyLA~Rd~e~~~~~~ 145 (796)
T PRK12906 80 RPFDV---QII------GGIVLHEGN--IAEMKTGEGKTLTATLPVYLNALTG---KGVHVVTVNEYLSSRDATEMGELY 145 (796)
T ss_pred CCchh---HHH------HHHHHhcCC--cccccCCCCCcHHHHHHHHHHHHcC---CCeEEEeccHHHHHhhHHHHHHHH
Confidence 67788 888 333445666 9999999999999999988766543 468999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHH-HHHHCC------CCcCCCeeEEEecchhHHHhh------
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNK------KLNLSLLKHFILDECDKMLEQ------ 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~~~------ 271 (448)
..+ +++++++.++.+.......+ .++|+++|...+- ++|+.+ ......+.+.|+||+|.++=+
T Consensus 146 ~~L-Gl~vg~i~~~~~~~~r~~~y---~~dI~Y~t~~e~gfDyLRD~m~~~~~~~v~r~~~~aIvDEvDSiLiDeartPL 221 (796)
T PRK12906 146 RWL-GLTVGLNLNSMSPDEKRAAY---NCDITYSTNSELGFDYLRDNMVVYKEQMVQRPLNYAIVDEVDSILIDEARTPL 221 (796)
T ss_pred Hhc-CCeEEEeCCCCCHHHHHHHh---cCCCeecCCccccccchhhccccchhhhhccCcceeeeccchheeeccCCCce
Confidence 999 99999999887655444333 3799999998773 344332 112345678999999966422
Q ss_pred ---------hhhHHHHHHHHHhCCC--------------------CC---------------------------------
Q psy1548 272 ---------LEMRRDVQEIFRSSPH--------------------TK--------------------------------- 289 (448)
Q Consensus 272 ---------~~~~~~~~~i~~~l~~--------------------~~--------------------------------- 289 (448)
......+..+...+.. .+
T Consensus 222 iisg~~~~~~~~y~~~~~~v~~l~~~~~~~~~~~~~~~dy~id~~~k~v~lte~G~~~~e~~~~i~~l~~~~~~~~~~~i 301 (796)
T PRK12906 222 IISGQAEKATDLYIRADRFVKTLIKDEAEDGDDDEDTGDYKIDEKTKTISLTEQGIRKAEKLFGLDNLYDSENTALAHHI 301 (796)
T ss_pred ecCCCCCcchHHHHHHHHHHHHHHhhhhccccccCCCCceEEEcccCceeecHHHHHHHHHHcCCccccCchhhhHHHHH
Confidence 0111111222111110 00
Q ss_pred ---------------------------------------------------------------------------eEEEE
Q psy1548 290 ---------------------------------------------------------------------------QVMMF 294 (448)
Q Consensus 290 ---------------------------------------------------------------------------q~i~~ 294 (448)
++.+|
T Consensus 302 ~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~ws~GLHQaieaKe~v~i~~e~~t~a~It~qnfFr~Y~kl~Gm 381 (796)
T PRK12906 302 DQALRANYIMLKDIDYVVQDGEVLIVDEFTGRVMEGRRYSDGLHQAIEAKEGVKIQEENQTLATITYQNFFRMYKKLSGM 381 (796)
T ss_pred HHHHHHHHHHhcCCcEEEECCEEEEEeCCCCCcCCCCccChHHHHHHHHhcCCCcCCCceeeeeehHHHHHHhcchhhcc
Confidence 12344
Q ss_pred eccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHH
Q psy1548 295 SATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALST 372 (448)
Q Consensus 295 SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~ 372 (448)
|.|...+..++...|.- ++. .+++. ......-....+......|...+...+... .+.++||||+|+..++.++.
T Consensus 382 TGTa~~e~~Ef~~iY~l-~vv-~IPtn-kp~~r~d~~d~i~~t~~~K~~al~~~i~~~~~~g~pvLI~t~si~~se~ls~ 458 (796)
T PRK12906 382 TGTAKTEEEEFREIYNM-EVI-TIPTN-RPVIRKDSPDLLYPTLDSKFNAVVKEIKERHAKGQPVLVGTVAIESSERLSH 458 (796)
T ss_pred CCCCHHHHHHHHHHhCC-CEE-EcCCC-CCeeeeeCCCeEEcCHHHHHHHHHHHHHHHHhCCCCEEEEeCcHHHHHHHHH
Confidence 44443332222222221 111 11111 100000111234445667888888888543 67799999999999999999
Q ss_pred HHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC----hhhHHHHHHHHH--HhcCCCCCCCcccccccccc
Q psy1548 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD----ENDAKILNNVQD--RFDVSISELPDEIDLSTYIE 446 (448)
Q Consensus 373 ~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~----~~d~~~l~~i~~--~~~~~~~~~p~~~~~~~~~~ 446 (448)
.|.+.|++...+|+++...++..+.+.++.|. |+++|+ ..|..+-..+.+ -+.|...++|++.....++.
T Consensus 459 ~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g~----VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~ 534 (796)
T PRK12906 459 LLDEAGIPHAVLNAKNHAKEAEIIMNAGQRGA----VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLR 534 (796)
T ss_pred HHHHCCCCeeEecCCcHHHHHHHHHhcCCCce----EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHh
Confidence 99999999999999999888888888776665 555555 223221112232 25677788888887777877
Q ss_pred CC
Q psy1548 447 GR 448 (448)
Q Consensus 447 ~~ 448 (448)
||
T Consensus 535 GR 536 (796)
T PRK12906 535 GR 536 (796)
T ss_pred hh
Confidence 77
No 105
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.66 E-value=6.9e-15 Score=137.11 Aligned_cols=254 Identities=15% Similarity=0.162 Sum_probs=164.5
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
-++|+.++.+ .+..+.+.++.|+.|-||+|||... .+.++.... .|.++.+.+|....+.+++..++.-. ++
T Consensus 99 s~~Q~~as~~--l~q~i~~k~~~lv~AV~GaGKTEMi-f~~i~~al~--~G~~vciASPRvDVclEl~~Rlk~aF---~~ 170 (441)
T COG4098 99 SPGQKKASNQ--LVQYIKQKEDTLVWAVTGAGKTEMI-FQGIEQALN--QGGRVCIASPRVDVCLELYPRLKQAF---SN 170 (441)
T ss_pred ChhHHHHHHH--HHHHHHhcCcEEEEEecCCCchhhh-HHHHHHHHh--cCCeEEEecCcccchHHHHHHHHHhh---cc
Confidence 3347774443 3344555789999999999999774 444444433 35589999999999999888777654 36
Q ss_pred ceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCC
Q psy1548 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTK 289 (448)
Q Consensus 210 ~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~ 289 (448)
..+.+++|+.+...+ .+++|+|.-.|++.- +.+++++|||+|...=. .-......+-+....+.
T Consensus 171 ~~I~~Lyg~S~~~fr--------~plvVaTtHQLlrFk-------~aFD~liIDEVDAFP~~-~d~~L~~Av~~ark~~g 234 (441)
T COG4098 171 CDIDLLYGDSDSYFR--------APLVVATTHQLLRFK-------QAFDLLIIDEVDAFPFS-DDQSLQYAVKKARKKEG 234 (441)
T ss_pred CCeeeEecCCchhcc--------ccEEEEehHHHHHHH-------hhccEEEEecccccccc-CCHHHHHHHHHhhcccC
Confidence 788899998754322 579999998887653 45678999999965221 11111122233344556
Q ss_pred eEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcch-HH------HHHHHHHhhC--CCCeEEEE
Q psy1548 290 QVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-KN------KKLFELLDVL--EFNQVVIF 360 (448)
Q Consensus 290 q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~------~~L~~ll~~~--~~~~~IIF 360 (448)
-.|.+|||.++.++.-+..-- -..+.+....+..+- ....+++...-. ++ ..|...++.. .+.+++||
T Consensus 235 ~~IylTATp~k~l~r~~~~g~--~~~~klp~RfH~~pL-pvPkf~w~~~~~k~l~r~kl~~kl~~~lekq~~~~~P~liF 311 (441)
T COG4098 235 ATIYLTATPTKKLERKILKGN--LRILKLPARFHGKPL-PVPKFVWIGNWNKKLQRNKLPLKLKRWLEKQRKTGRPVLIF 311 (441)
T ss_pred ceEEEecCChHHHHHHhhhCC--eeEeecchhhcCCCC-CCCceEEeccHHHHhhhccCCHHHHHHHHHHHhcCCcEEEE
Confidence 789999999877665544322 222233222222211 222333443322 21 2456666554 35689999
Q ss_pred ECccHHHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 361 VKSVTRCIALSTLLSEQ-N-FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~-g-~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
+++....++++..|++. + .....+|+. ...|.+.++.|++|+ +.+++.|+
T Consensus 312 ~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~--d~~R~EkV~~fR~G~--~~lLiTTT 363 (441)
T COG4098 312 FPEIETMEQVAAALKKKLPKETIASVHSE--DQHRKEKVEAFRDGK--ITLLITTT 363 (441)
T ss_pred ecchHHHHHHHHHHHhhCCccceeeeecc--CccHHHHHHHHHcCc--eEEEEEee
Confidence 99999999999999653 3 345778876 567999999999999 34444444
No 106
>KOG1123|consensus
Probab=99.64 E-value=2.5e-16 Score=152.75 Aligned_cols=253 Identities=17% Similarity=0.162 Sum_probs=171.7
Q ss_pred eccCCCCchhhhhhhccccccceeeee-C--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 122 NYDMPEDSDTYLHRVARAGRFGTKAVL-G--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 122 ~~~~p~~~~~yQ~~~~~~~~~~~~~~~-g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
+..+.+.+++||.. ++..+.. | ++.+|+.|.|+|||++-+-++.. + ..++|++|.+---+.||..
T Consensus 296 dLKPst~iRpYQEk------sL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~t-i-----kK~clvLcts~VSVeQWkq 363 (776)
T KOG1123|consen 296 DLKPSTQIRPYQEK------SLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACT-I-----KKSCLVLCTSAVSVEQWKQ 363 (776)
T ss_pred CcCcccccCchHHH------HHHHHhCCCcccCceEEEecCCCCceeeeeeeee-e-----cccEEEEecCccCHHHHHH
Confidence 34556678999999 8887774 3 78999999999999886544432 2 2379999999999999999
Q ss_pred HHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCC--------CCcCCCeeEEEecchhHHHh
Q psy1548 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK--------KLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~--------~~~~~~i~~lViDEah~l~~ 270 (448)
+++.|+..- +-.++.++++.... . ...+.|+|+|..++..--++. .+.-....++++||+|.+..
T Consensus 364 Qfk~wsti~-d~~i~rFTsd~Ke~-----~-~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA 436 (776)
T KOG1123|consen 364 QFKQWSTIQ-DDQICRFTSDAKER-----F-PSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA 436 (776)
T ss_pred HHHhhcccC-ccceEEeecccccc-----C-CCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH
Confidence 999998776 56777777765321 1 224789999986653221111 01124456899999998877
Q ss_pred hhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH-HhcCCCeEEEEcCccc--------------------------
Q psy1548 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK-KFMHDPMEVYVDDEAK-------------------------- 323 (448)
Q Consensus 271 ~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~-~~l~~~~~i~~~~~~~-------------------------- 323 (448)
. -|+..+.-+-..+ -++++||+-.+-.++.. +|+-.|..+..+--+-
T Consensus 437 ~-MFRRVlsiv~aHc-----KLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eY 510 (776)
T KOG1123|consen 437 K-MFRRVLSIVQAHC-----KLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREY 510 (776)
T ss_pred H-HHHHHHHHHHHHh-----hccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHH
Confidence 5 6666665554444 38999998554333322 3444444433221100
Q ss_pred ccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHh
Q psy1548 324 LTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFK 401 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~ 401 (448)
.....-+...+.+..-.|+....-+++.+ ++.++|||..++-.....|-.|.+ -+++|..++.||.++++.|+
T Consensus 511 L~~~t~kr~lLyvMNP~KFraCqfLI~~HE~RgDKiIVFsDnvfALk~YAikl~K-----pfIYG~Tsq~ERm~ILqnFq 585 (776)
T KOG1123|consen 511 LRENTRKRMLLYVMNPNKFRACQFLIKFHERRGDKIIVFSDNVFALKEYAIKLGK-----PFIYGPTSQNERMKILQNFQ 585 (776)
T ss_pred HhhhhhhhheeeecCcchhHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHcCC-----ceEECCCchhHHHHHHHhcc
Confidence 01111122233334445777766677654 577999999999988888887765 46899999999999999999
Q ss_pred cCC
Q psy1548 402 DFH 404 (448)
Q Consensus 402 ~g~ 404 (448)
-+.
T Consensus 586 ~n~ 588 (776)
T KOG1123|consen 586 TNP 588 (776)
T ss_pred cCC
Confidence 887
No 107
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.63 E-value=9e-15 Score=158.97 Aligned_cols=269 Identities=15% Similarity=0.145 Sum_probs=163.8
Q ss_pred Cchhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 128 DSDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
.+++||.+ .+..+. .|.+.|++..+|.|||+..+ .++..+.. ......+|||||.. +..+|.+.+.+
T Consensus 169 ~Lr~YQle------GlnWLi~l~~~g~gGILADEMGLGKTlQaI-alL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~k 240 (1033)
T PLN03142 169 KMRDYQLA------GLNWLIRLYENGINGILADEMGLGKTLQTI-SLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRR 240 (1033)
T ss_pred chHHHHHH------HHHHHHHHHhcCCCEEEEeCCCccHHHHHH-HHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHH
Confidence 47999999 665543 57889999999999998754 33333322 22234689999975 56788888998
Q ss_pred hhccCCCceEEEEEcCcccHHhH--HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDE--EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~--~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~ 280 (448)
|+ |.+++..++|........ ..+..+..+|+|+|++.+..... .+.--..++||+||||++-.. ......
T Consensus 241 w~---p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~---~Sklsk 312 (1033)
T PLN03142 241 FC---PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNE---NSLLSK 312 (1033)
T ss_pred HC---CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCH---HHHHHH
Confidence 87 467777787765422221 11223457999999998865332 122234578999999988553 233444
Q ss_pred HHHhCCCCCeEEEEeccCC-ccHHHH---HHHhcCC--------------------------------CeEEEE-cCccc
Q psy1548 281 IFRSSPHTKQVMMFSATLS-KEIRPV---CKKFMHD--------------------------------PMEVYV-DDEAK 323 (448)
Q Consensus 281 i~~~l~~~~q~i~~SAT~~-~~~~~~---~~~~l~~--------------------------------~~~i~~-~~~~~ 323 (448)
.++.+... ..+++|+|+- +.+.++ +..+..+ |..+.- ...-.
T Consensus 313 alr~L~a~-~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~ 391 (1033)
T PLN03142 313 TMRLFSTN-YRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE 391 (1033)
T ss_pred HHHHhhcC-cEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 45555443 3578899942 222221 1111000 000000 00000
Q ss_pred ccccceeEEEEEc---------------------------------------------------------------Ccch
Q psy1548 324 LTLHGLQQHYVKL---------------------------------------------------------------KENE 340 (448)
Q Consensus 324 ~~~~~i~~~~~~~---------------------------------------------------------------~~~~ 340 (448)
...+......+.+ ....
T Consensus 392 ~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~Sg 471 (1033)
T PLN03142 392 KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSG 471 (1033)
T ss_pred hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhh
Confidence 0000000000000 1123
Q ss_pred HHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEec
Q psy1548 341 KNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFAS 413 (448)
Q Consensus 341 k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t 413 (448)
|...|..++... .+.++|||+........|...|...|++...+||+++..+|..+++.|+....+..+.+++
T Consensus 472 Kl~lLdkLL~~Lk~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLS 546 (1033)
T PLN03142 472 KMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLS 546 (1033)
T ss_pred HHHHHHHHHHHHHhcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEe
Confidence 455555555443 4569999999999999999999999999999999999999999999998765443333333
No 108
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.59 E-value=1.2e-14 Score=130.08 Aligned_cols=153 Identities=18% Similarity=0.183 Sum_probs=100.6
Q ss_pred chhhhhhhccccccceeeee-------CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 129 SDTYLHRVARAGRFGTKAVL-------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~-------g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
+++||.+ ++..+.. ++++++.+|||+|||.+++..+..... ++++++|+..|+.|+.+.+.
T Consensus 4 lr~~Q~~------ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~------~~l~~~p~~~l~~Q~~~~~~ 71 (184)
T PF04851_consen 4 LRPYQQE------AIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR------KVLIVAPNISLLEQWYDEFD 71 (184)
T ss_dssp E-HHHHH------HHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC------EEEEEESSHHHHHHHHHHHH
T ss_pred CCHHHHH------HHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc------ceeEecCHHHHHHHHHHHHH
Confidence 4788999 7777764 589999999999999998765555432 89999999999999999997
Q ss_pred HhhccCCCce---------EEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC-----------CcCCCeeEEE
Q psy1548 202 RFSKYMSNIK---------VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-----------LNLSLLKHFI 261 (448)
Q Consensus 202 ~~~~~~~~~~---------v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~-----------~~~~~i~~lV 261 (448)
.+........ ......................+++++|.+.+........ ......+++|
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI 151 (184)
T PF04851_consen 72 DFGSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVI 151 (184)
T ss_dssp HHSTTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEE
T ss_pred HhhhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEE
Confidence 6654321110 0001111111112222333457899999999988765311 2345678999
Q ss_pred ecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 262 iDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
+||||++... .- +..++. .+...+++||||+.
T Consensus 152 ~DEaH~~~~~-~~---~~~i~~--~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 152 IDEAHHYPSD-SS---YREIIE--FKAAFILGLTATPF 183 (184)
T ss_dssp EETGGCTHHH-HH---HHHHHH--SSCCEEEEEESS-S
T ss_pred EehhhhcCCH-HH---HHHHHc--CCCCeEEEEEeCcc
Confidence 9999988665 21 444444 55677999999975
No 109
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.59 E-value=2.3e-13 Score=144.77 Aligned_cols=263 Identities=13% Similarity=0.138 Sum_probs=169.5
Q ss_pred CCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
-|+..+..+ .+..+....-++|+||||||||...=.-+++.-. ..+..+.+.-|.|--|..+.+.+..-.+.
T Consensus 49 LPv~~~~~~------i~~ai~~~~vvii~getGsGKTTqlP~~lle~g~--~~~g~I~~tQPRRlAArsvA~RvAeel~~ 120 (845)
T COG1643 49 LPVTAVRDE------ILKAIEQNQVVIIVGETGSGKTTQLPQFLLEEGL--GIAGKIGCTQPRRLAARSVAERVAEELGE 120 (845)
T ss_pred CCcHHHHHH------HHHHHHhCCEEEEeCCCCCChHHHHHHHHHhhhc--ccCCeEEecCchHHHHHHHHHHHHHHhCC
Confidence 345444555 5556666788999999999999763332333222 33446777789986666665555443322
Q ss_pred CCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH-HHHHHHHHhC
Q psy1548 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR-RDVQEIFRSS 285 (448)
Q Consensus 207 ~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~-~~~~~i~~~l 285 (448)
.++-.|++-.-..+.. .....|-++|.|.|++.+..+.. ++.++++|+||+|.-.-+.++. ..+..++...
T Consensus 121 ~~G~~VGY~iRfe~~~-------s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~r 192 (845)
T COG1643 121 KLGETVGYSIRFESKV-------SPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLNTDILLGLLKDLLARR 192 (845)
T ss_pred CcCceeeEEEEeeccC-------CCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHHHHHHHHHHHHHHhhc
Confidence 2244454443322211 11267999999999999987655 8899999999999643222433 3344456667
Q ss_pred CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcC-cch-HHHHHHHHHhh---CCCCeEEEE
Q psy1548 286 PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK-ENE-KNKKLFELLDV---LEFNQVVIF 360 (448)
Q Consensus 286 ~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~-~~~-k~~~L~~ll~~---~~~~~~IIF 360 (448)
++..++|.||||+..+ ++...|..-|+ +.+... ...++.+|.... .+. -.+.+...+.. ...|.++||
T Consensus 193 r~DLKiIimSATld~~--rfs~~f~~apv-i~i~GR----~fPVei~Y~~~~~~d~~l~~ai~~~v~~~~~~~~GdILvF 265 (845)
T COG1643 193 RDDLKLIIMSATLDAE--RFSAYFGNAPV-IEIEGR----TYPVEIRYLPEAEADYILLDAIVAAVDIHLREGSGSILVF 265 (845)
T ss_pred CCCceEEEEecccCHH--HHHHHcCCCCE-EEecCC----ccceEEEecCCCCcchhHHHHHHHHHHHhccCCCCCEEEE
Confidence 7778999999998654 55554443444 333222 233455553332 333 33444444433 356799999
Q ss_pred ECccHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 361 VKSVTRCIALSTLLSE----QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
.+...+.+.+++.|.+ ....+..+||.|+.+++.++++--..|+. .|.++|+
T Consensus 266 LpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~~R--KVVlATN 321 (845)
T COG1643 266 LPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGGKR--KVVLATN 321 (845)
T ss_pred CCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCCcc--eEEEEcc
Confidence 9999999999999998 35789999999999999998877766642 2445444
No 110
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.58 E-value=2.3e-14 Score=147.80 Aligned_cols=253 Identities=16% Similarity=0.165 Sum_probs=153.3
Q ss_pred chhhhhhhccccccceeeeeCc-ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~-~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
.+.||+.|-+. .+.++..|+ .+|+++.||+|||.++ +.++.++.+.....++|+|+-+++|+.|.+..+..+..
T Consensus 166 ~RyyQ~~AI~r--v~Eaf~~g~~raLlvMATGTGKTrTA-iaii~rL~r~~~~KRVLFLaDR~~Lv~QA~~af~~~~P-- 240 (875)
T COG4096 166 PRYYQIIAIRR--VIEAFSKGQNRALLVMATGTGKTRTA-IAIIDRLIKSGWVKRVLFLADRNALVDQAYGAFEDFLP-- 240 (875)
T ss_pred chHHHHHHHHH--HHHHHhcCCceEEEEEecCCCcceeH-HHHHHHHHhcchhheeeEEechHHHHHHHHHHHHHhCC--
Confidence 48889993221 334455563 5999999999999875 56777777766677999999999999999888777764
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCC-----CCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-----KLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~-----~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
+........+..... .++|.++|.+.+...+... .+....+++||+||||+ +.......++
T Consensus 241 -~~~~~n~i~~~~~~~--------s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHR-----gi~~~~~~I~ 306 (875)
T COG4096 241 -FGTKMNKIEDKKGDT--------SSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHR-----GIYSEWSSIL 306 (875)
T ss_pred -CccceeeeecccCCc--------ceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhh-----hHHhhhHHHH
Confidence 333333332222111 3689999999998877654 45567799999999996 4444555676
Q ss_pred HhCCCCCeEEEEeccCCccHHHHHHHhc-CCCeE------------------EEEcCcc---cccccc-----------e
Q psy1548 283 RSSPHTKQVMMFSATLSKEIRPVCKKFM-HDPME------------------VYVDDEA---KLTLHG-----------L 329 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT~~~~~~~~~~~~l-~~~~~------------------i~~~~~~---~~~~~~-----------i 329 (448)
.++..-. ++++||+......---.|. ..|+. +.+.... -..+.. +
T Consensus 307 dYFdA~~--~gLTATP~~~~d~~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~~~~~serek~~g~~i 384 (875)
T COG4096 307 DYFDAAT--QGLTATPKETIDRSTYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWKPDAGSEREKLQGEAI 384 (875)
T ss_pred HHHHHHH--HhhccCcccccccccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcCcCccchhhhhhcccc
Confidence 6654333 3448887653222211222 33322 2211110 000000 0
Q ss_pred --e-EEEEEcC-------c---chHHHHHHHHHhhC----CCCeEEEEECccHHHHHHHHHHHhC-----CCcEEEEeCC
Q psy1548 330 --Q-QHYVKLK-------E---NEKNKKLFELLDVL----EFNQVVIFVKSVTRCIALSTLLSEQ-----NFPAVSIHRG 387 (448)
Q Consensus 330 --~-~~~~~~~-------~---~~k~~~L~~ll~~~----~~~~~IIF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~ 387 (448)
. +.+-..+ . ..-...+.+.+... ..+|+||||.+..+|+.+...|... |--+..+.|+
T Consensus 385 ~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d 464 (875)
T COG4096 385 DEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNEYPEYNGRYAMKITGD 464 (875)
T ss_pred CcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHhCccccCceEEEEecc
Confidence 0 0000000 0 00122334444441 1458999999999999999999764 3447777777
Q ss_pred CCHHHHHHHHHHHhcCC
Q psy1548 388 MTQEERLKKYQEFKDFH 404 (448)
Q Consensus 388 ~~~~eR~~~l~~F~~g~ 404 (448)
-.+. ...+..|...+
T Consensus 465 ~~~~--q~~Id~f~~ke 479 (875)
T COG4096 465 AEQA--QALIDNFIDKE 479 (875)
T ss_pred chhh--HHHHHHHHhcC
Confidence 5444 45667776644
No 111
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.56 E-value=8.9e-13 Score=144.57 Aligned_cols=84 Identities=18% Similarity=0.204 Sum_probs=62.2
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH-HHHHhhccCC-
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK-EYERFSKYMS- 208 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~-~~~~~~~~~~- 208 (448)
+.|.++..+ ....+..|+++++.||||+|||++|++|++.... .+.+++|.+||++|..|+.. .+..+.+.++
T Consensus 248 ~~Q~~~~~~--i~~~~~~~~~~~~eA~TG~GKT~ayLlp~~~~~~---~~~~vvi~t~t~~Lq~Ql~~~~~~~l~~~~~~ 322 (850)
T TIGR01407 248 PEQLKLAEL--VLDQLTHSEKSLIEAPTGTGKTLGYLLPALYYAI---TEKPVVISTNTKVLQSQLLEKDIPLLNEILNF 322 (850)
T ss_pred HHHHHHHHH--HHHHhccCCcEEEECCCCCchhHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHHHHHHHHcCC
Confidence 338873332 2335667899999999999999999999988765 23489999999999999865 5666655442
Q ss_pred CceEEEEEcCc
Q psy1548 209 NIKVGVFFGGL 219 (448)
Q Consensus 209 ~~~v~~~~g~~ 219 (448)
++++..+.|+.
T Consensus 323 ~~~~~~~kG~~ 333 (850)
T TIGR01407 323 KINAALIKGKS 333 (850)
T ss_pred CceEEEEEcch
Confidence 36777777654
No 112
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.53 E-value=4.9e-13 Score=142.42 Aligned_cols=136 Identities=20% Similarity=0.220 Sum_probs=88.5
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
+..++..+||||||++.+..+...+ .....+++|+|+|+.+|..|+.+.+..+.... . .+..+...-...+.
T Consensus 264 ~~gli~~~TGsGKT~t~~~la~~l~-~~~~~~~vl~lvdR~~L~~Q~~~~f~~~~~~~--~-----~~~~s~~~L~~~l~ 335 (667)
T TIGR00348 264 RGGLIWHTQGSGKTLTMLFAARKAL-ELLKNPKVFFVVDRRELDYQLMKEFQSLQKDC--A-----ERIESIAELKRLLE 335 (667)
T ss_pred ceeEEEEecCCCccHHHHHHHHHHH-hhcCCCeEEEEECcHHHHHHHHHHHHhhCCCC--C-----cccCCHHHHHHHHh
Confidence 5799999999999988766554433 33456799999999999999999998875321 0 11111122223333
Q ss_pred cCCCcEEEEcHHHHHHHHHCC--CCcCCCe-eEEEecchhHHHhhhhhHHHHHHHH-HhCCCCCeEEEEeccCC
Q psy1548 230 THNPQIVVGTPGRILALVRNK--KLNLSLL-KHFILDECDKMLEQLEMRRDVQEIF-RSSPHTKQVMMFSATLS 299 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~--~~~~~~i-~~lViDEah~l~~~~~~~~~~~~i~-~~l~~~~q~i~~SAT~~ 299 (448)
....+|+|+|.+++...+... ......- -+||+||||+.... . +...+ +.+| +...++||||+-
T Consensus 336 ~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~----~~~~l~~~~p-~a~~lGfTaTP~ 403 (667)
T TIGR00348 336 KDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-E----LAKNLKKALK-NASFFGFTGTPI 403 (667)
T ss_pred CCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-H----HHHHHHhhCC-CCcEEEEeCCCc
Confidence 334689999999998654331 1111111 27999999976443 3 33333 3444 567899999974
No 113
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.49 E-value=1e-14 Score=148.56 Aligned_cols=136 Identities=23% Similarity=0.280 Sum_probs=112.5
Q ss_pred ccccccCCCcee--eeecCceeEEeecCCCccccccccC---CCccccccccccccccchhhhhhhhccCceeeeccCCc
Q psy1548 8 QEKLSCGSGNVF--LFFRAFIRFSSSFPHSKMADNDDLL---DYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82 (448)
Q Consensus 8 ~~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (448)
.+.|.++.+++| ||+|+||+|.+..-.+...+...+. .......+.|..++...+..+.+....|.....+|.+.
T Consensus 185 ~~~L~l~~~~~~~~sfdRpNi~~~v~~~~~~~~q~~fi~~~~~~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl 264 (590)
T COG0514 185 REQLGLQDANIFRGSFDRPNLALKVVEKGEPSDQLAFLATVLPQLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGL 264 (590)
T ss_pred HHHhcCCCcceEEecCCCchhhhhhhhcccHHHHHHHHHhhccccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCC
Confidence 357888888899 9999999999887543333333444 34456679999999988888888888888888888887
Q ss_pred ccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
+.-........++.+..+|+|||++||||||+++||+|+||+.|..++.|.|++|||||..
T Consensus 265 ~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG 325 (590)
T COG0514 265 SNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDG 325 (590)
T ss_pred CHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCC
Confidence 7666666666777788899999999999999999999999999999999999999999954
No 114
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.46 E-value=1.4e-11 Score=133.74 Aligned_cols=83 Identities=23% Similarity=0.264 Sum_probs=63.2
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHH-HHHHHHhhccCCC
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI-SKEYERFSKYMSN 209 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~-~~~~~~~~~~~~~ 209 (448)
+-|.+.+.+ ....+..++.+++.|+||+|||++|++|++... .+.+++|++||++|++|+ .+.+..+.+.+ +
T Consensus 248 ~~Q~~ma~~--V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~~----~~~~vvI~t~T~~Lq~Ql~~~~i~~l~~~~-~ 320 (820)
T PRK07246 248 PKQESFAKL--VGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQS----DQRQIIVSVPTKILQDQIMAEEVKAIQEVF-H 320 (820)
T ss_pred HHHHHHHHH--HHHHHhCCCcEEEECCCCCcHHHHHHHHHHHhc----CCCcEEEEeCcHHHHHHHHHHHHHHHHHhc-C
Confidence 336664442 333445678999999999999999999988754 245899999999999999 46777777776 6
Q ss_pred ceEEEEEcCcc
Q psy1548 210 IKVGVFFGGLP 220 (448)
Q Consensus 210 ~~v~~~~g~~~ 220 (448)
+++..+.|+.+
T Consensus 321 ~~~~~~kg~~~ 331 (820)
T PRK07246 321 IDCHSLKGPQN 331 (820)
T ss_pred CcEEEEECCcc
Confidence 77777776543
No 115
>KOG0385|consensus
Probab=99.42 E-value=3.4e-12 Score=130.09 Aligned_cols=271 Identities=17% Similarity=0.243 Sum_probs=168.8
Q ss_pred Cchhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 128 DSDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
.+++||-+ -+.++. .|-|.|+....|.|||+.. ++++..+.. ..-...-||+||...|.+. .+.+++
T Consensus 167 ~lr~YQve------GlnWLi~l~engingILaDEMGLGKTlQt-Is~l~yl~~~~~~~GPfLVi~P~StL~NW-~~Ef~r 238 (971)
T KOG0385|consen 167 ELRDYQLE------GLNWLISLYENGINGILADEMGLGKTLQT-ISLLGYLKGRKGIPGPFLVIAPKSTLDNW-MNEFKR 238 (971)
T ss_pred ccchhhhc------cHHHHHHHHhcCcccEeehhcccchHHHH-HHHHHHHHHhcCCCCCeEEEeeHhhHHHH-HHHHHH
Confidence 35888998 555544 4889999999999999774 444444433 2223358999999988654 455666
Q ss_pred hhccCCCceEEEEEcCcccHHh--HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKD--EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~--~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~ 280 (448)
|+ |++++.+++|+...... ...+..+..+|+|+|.+..+.- ...+.--..+++||||||++-.. ...+..
T Consensus 239 f~---P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~---~s~L~~ 310 (971)
T KOG0385|consen 239 FT---PSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNE---KSKLSK 310 (971)
T ss_pred hC---CCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcch---hhHHHH
Confidence 65 78999999998642221 1223445689999999987653 11222234579999999998554 344556
Q ss_pred HHHhCCCCCeEEEEecc-CCccHHH---HHHHhcCC--------------------------------------------
Q psy1548 281 IFRSSPHTKQVMMFSAT-LSKEIRP---VCKKFMHD-------------------------------------------- 312 (448)
Q Consensus 281 i~~~l~~~~q~i~~SAT-~~~~~~~---~~~~~l~~-------------------------------------------- 312 (448)
+++.+....+ +++|.| +-+.+.+ ++...+.+
T Consensus 311 ~lr~f~~~nr-LLlTGTPLQNNL~ELWaLLnFllPdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dVe 389 (971)
T KOG0385|consen 311 ILREFKTDNR-LLLTGTPLQNNLHELWALLNFLLPDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDVE 389 (971)
T ss_pred HHHHhcccce-eEeeCCcccccHHHHHHHHHhhchhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhHh
Confidence 6666654444 444555 2221111 11111100
Q ss_pred -----C--eEEEEcCc------------------------cccccc--------ceeEEEEE---------------cCc
Q psy1548 313 -----P--MEVYVDDE------------------------AKLTLH--------GLQQHYVK---------------LKE 338 (448)
Q Consensus 313 -----~--~~i~~~~~------------------------~~~~~~--------~i~~~~~~---------------~~~ 338 (448)
. ..+.+.-. ....+. ...|-|+. +..
T Consensus 390 ~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~n 469 (971)
T KOG0385|consen 390 KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTN 469 (971)
T ss_pred hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhc
Confidence 0 00110000 000000 01111211 112
Q ss_pred chHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC------------
Q psy1548 339 NEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH------------ 404 (448)
Q Consensus 339 ~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~------------ 404 (448)
..|...|..+|..+ .+.++|||.....-.+-|-.+.--+|+...-+.|.++-++|...++.|....
T Consensus 470 SGKm~vLDkLL~~Lk~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlLSTRA 549 (971)
T KOG0385|consen 470 SGKMLVLDKLLPKLKEQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLLSTRA 549 (971)
T ss_pred CcceehHHHHHHHHHhCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEEeccc
Confidence 33666676666554 4679999998888888888877778999999999999999999999998876
Q ss_pred CceEEEEecCh
Q psy1548 405 KGLAITFASDE 415 (448)
Q Consensus 405 ~g~~I~~~t~~ 415 (448)
.|+||.+++.+
T Consensus 550 GGLGINL~aAD 560 (971)
T KOG0385|consen 550 GGLGINLTAAD 560 (971)
T ss_pred ccccccccccc
Confidence 67787777653
No 116
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.36 E-value=4.5e-11 Score=123.91 Aligned_cols=127 Identities=17% Similarity=0.113 Sum_probs=97.1
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |.. ..-.++.|+ +....||.|||+++.+|++..... |..+.+++|+.-||.+=++.+..+.
T Consensus 78 r~ydv---Qli------g~l~Ll~G~--VaEM~TGEGKTLvA~l~a~l~AL~---G~~VhvvT~NdyLA~RDae~m~~ly 143 (764)
T PRK12326 78 RPFDV---QLL------GALRLLAGD--VIEMATGEGKTLAGAIAAAGYALQ---GRRVHVITVNDYLARRDAEWMGPLY 143 (764)
T ss_pred CcchH---HHH------HHHHHhCCC--cccccCCCCHHHHHHHHHHHHHHc---CCCeEEEcCCHHHHHHHHHHHHHHH
Confidence 67778 888 555556663 779999999999999998876544 3468999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHH-HHHHCC------CCcCCCeeEEEecchhHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNK------KLNLSLLKHFILDECDKML 269 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~-~~l~~~------~~~~~~i~~lViDEah~l~ 269 (448)
..+ +++++++.++.+.......+ .++|+++|..-+- ++|+.+ ......+.+.|+||+|.++
T Consensus 144 ~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 144 EAL-GLTVGWITEESTPEERRAAY---ACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred Hhc-CCEEEEECCCCCHHHHHHHH---cCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhe
Confidence 998 99999999887755444444 3799999987762 333322 1223557789999999765
No 117
>KOG0922|consensus
Probab=99.34 E-value=1.5e-10 Score=117.33 Aligned_cols=251 Identities=16% Similarity=0.178 Sum_probs=152.5
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHH-HHhhhccCCCeEEEEeeccHHHHHHHHHHHH-Hhhc
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLAT-LQQLETTDSNVYVLVMCHTRELAFQISKEYE-RFSK 205 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~-l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~-~~~~ 205 (448)
|+..|-.+ .+..+.+..-+++.|+||||||.. +|= |........| ++-+.-|.|--|..+.+... ....
T Consensus 51 PI~~~r~~------il~~ve~nqvlIviGeTGsGKSTQ--ipQyL~eaG~~~~g-~I~~TQPRRVAavslA~RVAeE~~~ 121 (674)
T KOG0922|consen 51 PIYKYRDQ------ILYAVEDNQVLIVIGETGSGKSTQ--IPQYLAEAGFASSG-KIACTQPRRVAAVSLAKRVAEEMGC 121 (674)
T ss_pred CHHHHHHH------HHHHHHHCCEEEEEcCCCCCcccc--HhHHHHhcccccCC-cEEeecCchHHHHHHHHHHHHHhCC
Confidence 45444555 666666778899999999999965 442 2222222333 46777788876666554433 2333
Q ss_pred cCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhh-hHHHHHHHHHh
Q psy1548 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE-MRRDVQEIFRS 284 (448)
Q Consensus 206 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~-~~~~~~~i~~~ 284 (448)
.+ +-.|+...--.+... ....|.+.|-|.|++-+..+.. ++..++||+||||.-.-..+ ....++++++.
T Consensus 122 ~l-G~~VGY~IRFed~ts-------~~TrikymTDG~LLRE~l~Dp~-LskYsvIIlDEAHERsl~TDiLlGlLKki~~~ 192 (674)
T KOG0922|consen 122 QL-GEEVGYTIRFEDSTS-------KDTRIKYMTDGMLLREILKDPL-LSKYSVIILDEAHERSLHTDILLGLLKKILKK 192 (674)
T ss_pred Cc-CceeeeEEEecccCC-------CceeEEEecchHHHHHHhcCCc-cccccEEEEechhhhhhHHHHHHHHHHHHHhc
Confidence 33 445544432211111 1267999999999887665443 68899999999995321101 22223333332
Q ss_pred CCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcch-HHHHHHHHH---hhCCCCeEEEE
Q psy1548 285 SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENE-KNKKLFELL---DVLEFNQVVIF 360 (448)
Q Consensus 285 l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll---~~~~~~~~IIF 360 (448)
.+..++|++|||+..+ .+...|..-|+... ... ...++..|..-+..+ -.+.+...+ ...+.+-+|||
T Consensus 193 -R~~LklIimSATlda~--kfS~yF~~a~i~~i-~GR----~fPVei~y~~~p~~dYv~a~~~tv~~Ih~~E~~GDILvF 264 (674)
T KOG0922|consen 193 -RPDLKLIIMSATLDAE--KFSEYFNNAPILTI-PGR----TFPVEILYLKEPTADYVDAALITVIQIHLTEPPGDILVF 264 (674)
T ss_pred -CCCceEEEEeeeecHH--HHHHHhcCCceEee-cCC----CCceeEEeccCCchhhHHHHHHHHHHHHccCCCCCEEEE
Confidence 3456899999998643 44444444344333 222 234555555433332 223333333 33466789999
Q ss_pred ECccHHHHHHHHHHHhC----CC----cEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 361 VKSVTRCIALSTLLSEQ----NF----PAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~----g~----~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
...+++.+.+++.|.+. +- -+..+||.|+.+++.++++.--.|.
T Consensus 265 LtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g~ 316 (674)
T KOG0922|consen 265 LTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPGK 316 (674)
T ss_pred eCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCCc
Confidence 99999999999999874 11 2478999999999999988766554
No 118
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.33 E-value=1.2e-10 Score=122.52 Aligned_cols=152 Identities=22% Similarity=0.230 Sum_probs=107.2
Q ss_pred hhhhhhhccccccceeeeeC----cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 130 DTYLHRVARAGRFGTKAVLG----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g----~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
..-|+. +...+... +..++.+.||||||.+|+-.+-..+.. |.++|+++|-.+|..|+...++...
T Consensus 200 n~~Q~~------a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~---GkqvLvLVPEI~Ltpq~~~rf~~rF- 269 (730)
T COG1198 200 NQEQQA------AVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQ---GKQVLVLVPEIALTPQLLARFKARF- 269 (730)
T ss_pred CHHHHH------HHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHc---CCEEEEEeccccchHHHHHHHHHHh-
Confidence 344777 55554433 678999999999999998776666643 3589999999999999888777765
Q ss_pred cCCCceEEEEEcCcccHH---hHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHH--hh--hhhHHHH
Q psy1548 206 YMSNIKVGVFFGGLPIQK---DEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML--EQ--LEMRRDV 278 (448)
Q Consensus 206 ~~~~~~v~~~~g~~~~~~---~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~--~~--~~~~~~~ 278 (448)
+.++..++++.+..+ .+.....+...|+|||-..+. ..++++.+||+||=|.-. .. ..+...-
T Consensus 270 ---g~~v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF-------~Pf~~LGLIIvDEEHD~sYKq~~~prYhARd 339 (730)
T COG1198 270 ---GAKVAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALF-------LPFKNLGLIIVDEEHDSSYKQEDGPRYHARD 339 (730)
T ss_pred ---CCChhhhcccCChHHHHHHHHHHhcCCceEEEEechhhc-------CchhhccEEEEeccccccccCCcCCCcCHHH
Confidence 577888887766543 344556788999999965442 357899999999999431 10 0122222
Q ss_pred HHHHHhCCCCCeEEEEeccCCcc
Q psy1548 279 QEIFRSSPHTKQVMMFSATLSKE 301 (448)
Q Consensus 279 ~~i~~~l~~~~q~i~~SAT~~~~ 301 (448)
-.+++.-..++++|+-|||.+-+
T Consensus 340 vA~~Ra~~~~~pvvLgSATPSLE 362 (730)
T COG1198 340 VAVLRAKKENAPVVLGSATPSLE 362 (730)
T ss_pred HHHHHHHHhCCCEEEecCCCCHH
Confidence 23444445688999999996544
No 119
>KOG0920|consensus
Probab=99.32 E-value=1e-10 Score=124.38 Aligned_cols=252 Identities=14% Similarity=0.143 Sum_probs=160.8
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCccc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 221 (448)
.+..+.+..-++|+|.||+|||...---+|+.....+...++++.-|.|--|..+.+++..=.....+-.|+.-.+....
T Consensus 181 Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~VGYqvrl~~~ 260 (924)
T KOG0920|consen 181 ILDAIEENQVVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGEEVGYQVRLESK 260 (924)
T ss_pred HHHHHHhCceEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCeeeEEEeeecc
Confidence 55566667789999999999998755556665544445667777779988887777766553333224444444333221
Q ss_pred HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCcc
Q psy1548 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKE 301 (448)
Q Consensus 222 ~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~ 301 (448)
.. . ...+++||.|.|++.+.. .-.+..+.++|+||+|.-.-..+|.-.+.+.+-...++.++|+||||+..+
T Consensus 261 ~s------~-~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~LkvILMSAT~dae 332 (924)
T KOG0920|consen 261 RS------R-ETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDLKVILMSATLDAE 332 (924)
T ss_pred cC------C-ceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCceEEEeeeecchH
Confidence 11 1 257999999999999987 445788999999999965433355555555555556889999999998733
Q ss_pred HHHHHHHhcCCCeEEEEcCc-ccc--------------cccceeEE------------EEEcCcchHHHHHHHHHhh---
Q psy1548 302 IRPVCKKFMHDPMEVYVDDE-AKL--------------TLHGLQQH------------YVKLKENEKNKKLFELLDV--- 351 (448)
Q Consensus 302 ~~~~~~~~l~~~~~i~~~~~-~~~--------------~~~~i~~~------------~~~~~~~~k~~~L~~ll~~--- 351 (448)
.+..-|...|+ +.+... ... ......++ ......+-....+..++..
T Consensus 333 --~fs~YF~~~pv-i~i~grtfpV~~~fLEDil~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~Li~~li~~I~~ 409 (924)
T KOG0920|consen 333 --LFSDYFGGCPV-ITIPGRTFPVKEYFLEDILSKTGYVSEDDSARSGPERSQLRLARLKLWEPEIDYDLIEDLIEYIDE 409 (924)
T ss_pred --HHHHHhCCCce-EeecCCCcchHHHHHHHHHHHhcccccccccccccccCccccccchhccccccHHHHHHHHHhccc
Confidence 33333333333 322111 000 00000000 0000111233444444433
Q ss_pred -CCCCeEEEEECccHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 352 -LEFNQVVIFVKSVTRCIALSTLLSEQ-------NFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 352 -~~~~~~IIF~~s~~~a~~l~~~L~~~-------g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
...+.+|||.+...++..+.+.|... .+-+..+|+.|+..++..+...--.|.
T Consensus 410 ~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~eQ~~VF~~pp~g~ 470 (924)
T KOG0920|consen 410 REFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEEQQAVFKRPPKGT 470 (924)
T ss_pred CCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHHHHHhcCCCCCCc
Confidence 34678999999999999999999752 256889999999999999988877764
No 120
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.30 E-value=1.1e-10 Score=123.74 Aligned_cols=127 Identities=19% Similarity=0.165 Sum_probs=96.2
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |-..|. .+. .--|....||.|||+++.+|++..... |..+.+++|+.-||.+-++.+..+.
T Consensus 82 ~~ydV---QliGg~------~Lh--~G~iaEM~TGEGKTLvA~l~a~l~al~---G~~VhvvT~ndyLA~RD~e~m~~l~ 147 (913)
T PRK13103 82 RHFDV---QLIGGM------TLH--EGKIAEMRTGEGKTLVGTLAVYLNALS---GKGVHVVTVNDYLARRDANWMRPLY 147 (913)
T ss_pred Ccchh---HHHhhh------Hhc--cCccccccCCCCChHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHHHh
Confidence 56677 777322 222 345788999999999999998865544 3468999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCCC------CcCCCeeEEEecchhHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNKK------LNLSLLKHFILDECDKML 269 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~ 269 (448)
..+ +++++++.++.+.......+. ++|++||..-+ .++|+.+. .....+.+.||||+|.++
T Consensus 148 ~~l-Gl~v~~i~~~~~~~err~~Y~---~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 148 EFL-GLSVGIVTPFQPPEEKRAAYA---ADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred ccc-CCEEEEECCCCCHHHHHHHhc---CCEEEEcccccccchhhccceechhhhcccccceeEechhhhee
Confidence 998 999999988876555444442 79999999876 33333321 123778899999999764
No 121
>KOG0951|consensus
Probab=99.30 E-value=1.8e-10 Score=122.99 Aligned_cols=267 Identities=15% Similarity=0.177 Sum_probs=166.2
Q ss_pred CCcccccceeEeeccCCCCchhhhhhhccccccceeeee-CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 110 RGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 110 ~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~-g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
.+++-++...+|... .++ |.+ .++.+-+ ..++++.+|+|||||+|+-++++. .....+++++.|
T Consensus 1130 ~~l~N~~~~~lf~~~--n~i---qtq------Vf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~----~~~~~~~vyi~p 1194 (1674)
T KOG0951|consen 1130 SALRNPSFETLFQDF--NPI---QTQ------VFTSLYNTNDNVLVGAPNGSGKTACAELALLR----PDTIGRAVYIAP 1194 (1674)
T ss_pred hccCCcchhhhcccc--CCc---eEE------EEeeeecccceEEEecCCCCchhHHHHHHhcC----CccceEEEEecc
Confidence 344444444444322 677 888 8888776 578999999999999999888876 234569999999
Q ss_pred cHHHHHHHHHHHH-HhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhH
Q psy1548 189 TRELAFQISKEYE-RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267 (448)
Q Consensus 189 t~~L~~q~~~~~~-~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 267 (448)
..+.+..+++.+. +|.... +..+..++|...... ..+.. .+|+|+||+++..+ + ....++++|.||+|.
T Consensus 1195 ~~~i~~~~~~~w~~~f~~~~-G~~~~~l~ge~s~~l--kl~~~--~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~ 1264 (1674)
T KOG0951|consen 1195 LEEIADEQYRDWEKKFSKLL-GLRIVKLTGETSLDL--KLLQK--GQVIISTPEQWDLL-Q----SIQQVDLFIVDELHL 1264 (1674)
T ss_pred hHHHHHHHHHHHHHhhcccc-CceEEecCCccccch--HHhhh--cceEEechhHHHHH-h----hhhhcceEeeehhhh
Confidence 9999977666544 455444 788888888775443 23333 48999999998665 2 567889999999997
Q ss_pred HHhhhh----hHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCc-chHH
Q psy1548 268 MLEQLE----MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE-NEKN 342 (448)
Q Consensus 268 l~~~~~----~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~ 342 (448)
+.+..+ ....+..+-..+-++.+++++|..+.+. +++ ..+.....+...+.....+-.+.-.-+.... ....
T Consensus 1265 igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana-~d~--ig~s~~~v~Nf~p~~R~~Pl~i~i~~~~~~~~~~~~ 1341 (1674)
T KOG0951|consen 1265 IGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANA-RDL--IGASSSGVFNFSPSVRPVPLEIHIQSVDISHFESRM 1341 (1674)
T ss_pred hcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccc-hhh--ccccccceeecCcccCCCceeEEEEEeccchhHHHH
Confidence 764311 0111445555566677899999988654 333 1222222233333322222222211111111 1111
Q ss_pred H-----HHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHh----------------------CCCcEEEEeCCCCHHHHH
Q psy1548 343 K-----KLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSE----------------------QNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 343 ~-----~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~----------------------~g~~~~~lh~~~~~~eR~ 394 (448)
. ....+.+. ..+++++||++++++|..++..|-. ...+...=|.+|+..+..
T Consensus 1342 ~am~~~~~~ai~~~a~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~ 1421 (1674)
T KOG0951|consen 1342 LAMTKPTYTAIVRHAGNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQE 1421 (1674)
T ss_pred HHhhhhHHHHHHHHhcCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHH
Confidence 1 11112211 2466899999999999988865421 011112228899999988
Q ss_pred HHHHHHhcCC
Q psy1548 395 KKYQEFKDFH 404 (448)
Q Consensus 395 ~~l~~F~~g~ 404 (448)
-+-.-|..|.
T Consensus 1422 iv~~l~e~g~ 1431 (1674)
T KOG0951|consen 1422 IVQQLFEAGA 1431 (1674)
T ss_pred HHHHHHhcCc
Confidence 8888888887
No 122
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.23 E-value=4.7e-10 Score=118.56 Aligned_cols=127 Identities=20% Similarity=0.206 Sum_probs=94.2
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |-. .. +...+.-|..+.||.|||+++.+|++-.... |..+.|++++..||.+-.+++..+.
T Consensus 76 r~ydv---Qli------g~--l~L~~G~IaEm~TGEGKTL~a~l~ayl~aL~---G~~VhVvT~NdyLA~RD~e~m~pvy 141 (870)
T CHL00122 76 RHFDV---QLI------GG--LVLNDGKIAEMKTGEGKTLVATLPAYLNALT---GKGVHIVTVNDYLAKRDQEWMGQIY 141 (870)
T ss_pred CCCch---Hhh------hh--HhhcCCccccccCCCCchHHHHHHHHHHHhc---CCceEEEeCCHHHHHHHHHHHHHHH
Confidence 46777 777 22 2224567999999999999999998643332 4468999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHH-HHHHCCC------CcCCCeeEEEecchhHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRIL-ALVRNKK------LNLSLLKHFILDECDKML 269 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~-~~l~~~~------~~~~~i~~lViDEah~l~ 269 (448)
..+ ++.++++.++.+.......+ .++|+++|..-+- ++|+.+. .....+.+.|+||+|.++
T Consensus 142 ~~L-GLsvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 142 RFL-GLTVGLIQEGMSSEERKKNY---LKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred HHc-CCceeeeCCCCChHHHHHhc---CCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhe
Confidence 999 99999998887765544433 3799999997653 3333221 123567899999999764
No 123
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=99.22 E-value=8.2e-11 Score=122.67 Aligned_cols=75 Identities=24% Similarity=0.300 Sum_probs=58.0
Q ss_pred ceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh-ccCC-CceEEEEEcC
Q psy1548 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS-KYMS-NIKVGVFFGG 218 (448)
Q Consensus 143 ~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~-~~~~-~~~v~~~~g~ 218 (448)
...+..++.+++.||||+|||++|++|++..+... .+.++||++||++|+.|+.+.+..+. +.++ .+++..+.|.
T Consensus 10 ~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~~~-~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i~~~~lkGr 86 (636)
T TIGR03117 10 LTSLRQKRIGMLEASTGVGKTLAMIMAALTMLKER-PDQKIAIAVPTLALMGQLWSELERLTAEGLAGPVQAGFFPGS 86 (636)
T ss_pred HHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHHhc-cCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCeeEEEEECC
Confidence 34455688999999999999999999999876532 24589999999999999999988887 3321 4555555543
No 124
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.21 E-value=2.8e-09 Score=112.78 Aligned_cols=73 Identities=11% Similarity=0.145 Sum_probs=60.6
Q ss_pred hHHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 340 EKNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 340 ~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
.+...|...++. ..+.++||||+|++.|+.+++.|.+.|+++..+||++++.+|.++++.|+.|+ +.|+++++
T Consensus 426 ~qi~~Ll~eI~~~~~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G~--i~VLV~t~ 500 (655)
T TIGR00631 426 GQVDDLLSEIRQRVARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLGE--FDVLVGIN 500 (655)
T ss_pred chHHHHHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcCC--ceEEEEcC
Confidence 345555555543 24678999999999999999999999999999999999999999999999987 45555554
No 125
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.21 E-value=1.2e-09 Score=115.38 Aligned_cols=127 Identities=17% Similarity=0.180 Sum_probs=93.6
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |-..|. .+ ..--|..+.||-|||+++.+|++-....+ ..+-||+++--||..=.+++..+.
T Consensus 85 r~ydV---QliGgl------~L--h~G~IAEM~TGEGKTL~atlpaylnAL~G---kgVhVVTvNdYLA~RDae~m~~vy 150 (939)
T PRK12902 85 RHFDV---QLIGGM------VL--HEGQIAEMKTGEGKTLVATLPSYLNALTG---KGVHVVTVNDYLARRDAEWMGQVH 150 (939)
T ss_pred Ccchh---HHHhhh------hh--cCCceeeecCCCChhHHHHHHHHHHhhcC---CCeEEEeCCHHHHHhHHHHHHHHH
Confidence 57777 777222 22 34458899999999999999987654443 358999999999999899999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHC------CCCcCCCeeEEEecchhHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRN------KKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~------~~~~~~~i~~lViDEah~l~ 269 (448)
..+ ++.|+++.++.+........ .+||++||+..+ .++|+. .......+.+.||||+|.++
T Consensus 151 ~~L-GLtvg~i~~~~~~~err~aY---~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 151 RFL-GLSVGLIQQDMSPEERKKNY---ACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred HHh-CCeEEEECCCCChHHHHHhc---CCCeEEecCCcccccchhhhhcccccccccCccceEEEeccccee
Confidence 888 99999998877654443333 489999999887 222221 22334677889999999764
No 126
>KOG0949|consensus
Probab=99.18 E-value=5.7e-11 Score=123.93 Aligned_cols=158 Identities=14% Similarity=0.134 Sum_probs=109.4
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
.+|.+ .+...-.+++++|+|||.+|||.+--. ++..+.+......+|+++|+++|++|+...+..-....--.
T Consensus 514 ~WQ~e------lLDsvDr~eSavIVAPTSaGKTfisfY-~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 514 EWQRE------LLDSVDRNESAVIVAPTSAGKTFISFY-AIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred HHHHH------HhhhhhcccceEEEeeccCCceeccHH-HHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 44888 777777899999999999999977443 33444444445589999999999999877666543211012
Q ss_pred eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC---CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN---KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 211 ~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
+...+.|......+.. .-.|+|+|+-|+.+.+++.. ...+.++++++|+||+|.+... .-.-.++.++-. -
T Consensus 587 rg~sl~g~ltqEYsin---p~nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~-ed~l~~Eqll~l--i 660 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSIN---PWNCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNE-EDGLLWEQLLLL--I 660 (1330)
T ss_pred cchhhHhhhhHHhcCC---chhceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhcccc-ccchHHHHHHHh--c
Confidence 2333444443333322 11489999999999998877 4566799999999999988654 333334444333 3
Q ss_pred CCeEEEEeccCCcc
Q psy1548 288 TKQVMMFSATLSKE 301 (448)
Q Consensus 288 ~~q~i~~SAT~~~~ 301 (448)
.|.++++|||+.+.
T Consensus 661 ~CP~L~LSATigN~ 674 (1330)
T KOG0949|consen 661 PCPFLVLSATIGNP 674 (1330)
T ss_pred CCCeeEEecccCCH
Confidence 56799999999664
No 127
>KOG0387|consensus
Probab=99.17 E-value=2.3e-10 Score=117.40 Aligned_cols=257 Identities=18% Similarity=0.226 Sum_probs=152.1
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
+.+||++..+ +.|.....+.--|+....|.|||... +..|..+... .-...+|||||.. +..||.+++..|.
T Consensus 206 Lf~yQreGV~--WL~~L~~q~~GGILgDeMGLGKTIQi-isFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w~--- 278 (923)
T KOG0387|consen 206 LFPYQREGVQ--WLWELYCQRAGGILGDEMGLGKTIQI-ISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTWW--- 278 (923)
T ss_pred hhHHHHHHHH--HHHHHHhccCCCeecccccCccchhH-HHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHhC---
Confidence 4788999221 12233344677899999999999542 2222222222 2224799999986 6678888888887
Q ss_pred CCceEEEEEcCcccHH---------hHHHH---hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH
Q psy1548 208 SNIKVGVFFGGLPIQK---------DEEYL---KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~---------~~~~l---~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 275 (448)
|..++..++|...... ....+ .....+|+|+|.+.+.- ....+.-...+++|+||.|++-.. .
T Consensus 279 p~~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~--~~d~l~~~~W~y~ILDEGH~IrNp---n 353 (923)
T KOG0387|consen 279 PPFRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRI--QGDDLLGILWDYVILDEGHRIRNP---N 353 (923)
T ss_pred cceEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhcc--cCcccccccccEEEecCcccccCC---c
Confidence 4678888877655210 01111 11124799999876532 223333445679999999987543 2
Q ss_pred HHHHHHHHhCCCCCeEEEEecc-CCccHHHHH------------------------------------------------
Q psy1548 276 RDVQEIFRSSPHTKQVMMFSAT-LSKEIRPVC------------------------------------------------ 306 (448)
Q Consensus 276 ~~~~~i~~~l~~~~q~i~~SAT-~~~~~~~~~------------------------------------------------ 306 (448)
..+...++.++...+ |++|.| +-+.+.++-
T Consensus 354 s~islackki~T~~R-iILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~~L 432 (923)
T KOG0387|consen 354 SKISLACKKIRTVHR-IILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAVAL 432 (923)
T ss_pred cHHHHHHHhccccce-EEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHHHH
Confidence 333334444443333 344444 222211111
Q ss_pred -----------------------------------------HHhcC--------------------------CCeEEEEc
Q psy1548 307 -----------------------------------------KKFMH--------------------------DPMEVYVD 319 (448)
Q Consensus 307 -----------------------------------------~~~l~--------------------------~~~~i~~~ 319 (448)
..|+. +|..+.-.
T Consensus 433 r~lI~PylLRR~K~dv~~~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll~~~ 512 (923)
T KOG0387|consen 433 RDLISPYLLRRMKSDVKGLKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLLDRR 512 (923)
T ss_pred HHHhHHHHHHHHHHHhhhccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccccCc
Confidence 11100 00000000
Q ss_pred CcccccccceeE--EE-EEcCcchHHHHHHHHHhh--CCCCeEEEEECccHHHHHHHHHHH-hCCCcEEEEeCCCCHHHH
Q psy1548 320 DEAKLTLHGLQQ--HY-VKLKENEKNKKLFELLDV--LEFNQVVIFVKSVTRCIALSTLLS-EQNFPAVSIHRGMTQEER 393 (448)
Q Consensus 320 ~~~~~~~~~i~~--~~-~~~~~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a~~l~~~L~-~~g~~~~~lh~~~~~~eR 393 (448)
++ ...+ .+ -.++...|...+..++.. ..+.++|+|..++....-+-..|. ..|+.+.-+.|..+...|
T Consensus 513 ~~------~~~~~~D~~g~~k~sGKm~vl~~ll~~W~kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R 586 (923)
T KOG0387|consen 513 DE------DEKQGPDYEGDPKRSGKMKVLAKLLKDWKKQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALR 586 (923)
T ss_pred cc------ccccCCCcCCChhhcchHHHHHHHHHHHhhCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchh
Confidence 00 0000 00 111223367777777643 256699999999999999999998 579999999999999999
Q ss_pred HHHHHHHhcCC
Q psy1548 394 LKKYQEFKDFH 404 (448)
Q Consensus 394 ~~~l~~F~~g~ 404 (448)
..++++|.++.
T Consensus 587 ~~lVd~Fne~~ 597 (923)
T KOG0387|consen 587 QKLVDRFNEDE 597 (923)
T ss_pred hHHHHhhcCCC
Confidence 99999999988
No 128
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=99.11 E-value=1.7e-08 Score=100.56 Aligned_cols=258 Identities=16% Similarity=0.185 Sum_probs=171.3
Q ss_pred CCeEEEEeeccHHHHHHHHHHHHHhhccCCCc----eEEEEEc--------------CcccHHhHHHHhc----------
Q psy1548 179 SNVYVLVMCHTRELAFQISKEYERFSKYMSNI----KVGVFFG--------------GLPIQKDEEYLKT---------- 230 (448)
Q Consensus 179 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~----~v~~~~g--------------~~~~~~~~~~l~~---------- 230 (448)
..+++|||+|+|..|.++.+.+..+......+ +...-+| ......+...+..
T Consensus 36 tRPkVLIL~P~R~~A~~~V~~Li~l~~~~~~~~nk~RF~~efg~~~~~~~~~~~~~~~~~kP~D~~~~F~GN~DD~FrlG 115 (442)
T PF06862_consen 36 TRPKVLILLPFRNSALRIVETLISLLPPGKQVENKKRFEEEFGLPEDEDDDEEPPEFKKSKPEDFKALFSGNNDDCFRLG 115 (442)
T ss_pred CCceEEEEcccHHHHHHHHHHHHHHcCccchHHHHHHHHHHcCCCccccchhhhccccCCCchhHHHhcCCCccceEEEe
Confidence 45899999999999999888888776541000 0000011 0001111111111
Q ss_pred --------------CCCcEEEEcHHHHHHHHHC------CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC---C
Q psy1548 231 --------------HNPQIVVGTPGRILALVRN------KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP---H 287 (448)
Q Consensus 231 --------------~~~~IlV~Tp~~l~~~l~~------~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~---~ 287 (448)
...||+|++|=-|...+.. ....+++|.++|+|.||.++. ..+..+..++..+. .
T Consensus 116 ik~trk~ikLys~Fy~SDIIiASPLGLr~~i~~~~~~~~d~DFLSSIEv~iiD~ad~l~M--QNW~Hv~~v~~~lN~~P~ 193 (442)
T PF06862_consen 116 IKFTRKSIKLYSDFYSSDIIIASPLGLRMIIGEEGEKKRDYDFLSSIEVLIIDQADVLLM--QNWEHVLHVFEHLNLQPK 193 (442)
T ss_pred EEEecCeeeeecccccCCEEEEChHHHHHHhccccccccccchhheeeeEeechhhHHHH--hhHHHHHHHHHHhccCCC
Confidence 1368999999888877763 234579999999999998776 46677777766553 2
Q ss_pred C---------------------CeEEEEeccCCccHHHHHHHhcCCCe---EEEEcCc----ccccccceeEEEEEcCcc
Q psy1548 288 T---------------------KQVMMFSATLSKEIRPVCKKFMHDPM---EVYVDDE----AKLTLHGLQQHYVKLKEN 339 (448)
Q Consensus 288 ~---------------------~q~i~~SAT~~~~~~~~~~~~l~~~~---~i~~~~~----~~~~~~~i~~~~~~~~~~ 339 (448)
. +|+|++|+...+++..+....+.+.. .+..... .......+.|.+...+..
T Consensus 194 ~~~~~DfsRVR~w~Ldg~a~~~RQtii~S~~~~pe~~slf~~~~~N~~G~v~~~~~~~~~g~i~~v~~~v~Q~F~r~~~~ 273 (442)
T PF06862_consen 194 KSHDTDFSRVRPWYLDGQAKYYRQTIIFSSFQTPEINSLFNRHCQNYAGKVRLKPPYEASGVISQVVVQVRQVFQRFDCS 273 (442)
T ss_pred CCCCCCHHHHHHHHHcCcchheeEeEEecCCCCHHHHHHHHhhCcCccceEEEeeccccceeeeccccCCceEEEEecCC
Confidence 1 39999999999999999888665432 2221111 023445677887765432
Q ss_pred -------hHHHHHHH----HHh-hCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCce
Q psy1548 340 -------EKNKKLFE----LLD-VLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGL 407 (448)
Q Consensus 340 -------~k~~~L~~----ll~-~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~ 407 (448)
.+++.... -+. ....+.+|||++|--.=-.+.++|++.++....+|.-.+..+-.++-..|.+|+ .
T Consensus 274 s~~~~~d~Rf~yF~~~iLP~l~~~~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G~--~ 351 (442)
T PF06862_consen 274 SPADDPDARFKYFTKKILPQLKRDSKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHGR--K 351 (442)
T ss_pred CcchhhhHHHHHHHHHHHHHhhhccCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcCC--c
Confidence 23333333 222 334568999999999999999999999999999999999999999999999998 5
Q ss_pred EEEEecChhhHHHHHHHHHHhcCCCCCCCcccc
Q psy1548 408 AITFASDENDAKILNNVQDRFDVSISELPDEID 440 (448)
Q Consensus 408 ~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~ 440 (448)
.|+++|.....-.--.|...-++-+..+|+...
T Consensus 352 ~iLL~TER~HFfrRy~irGi~~viFY~~P~~p~ 384 (442)
T PF06862_consen 352 PILLYTERFHFFRRYRIRGIRHVIFYGPPENPQ 384 (442)
T ss_pred eEEEEEhHHhhhhhceecCCcEEEEECCCCChh
Confidence 777777753222222344444455666666644
No 129
>KOG4150|consensus
Probab=99.11 E-value=1.5e-10 Score=114.52 Aligned_cols=300 Identities=14% Similarity=0.003 Sum_probs=193.4
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceE
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 212 (448)
|.+ ++..+..|+++++...|.+||+++|.+.....+...+ ....+++.|+.++++...+.+.-.....|..+.
T Consensus 291 ~~~------~~~~~~~G~~~~~~~~~~~GK~~~~~~~s~~~~~~~~-~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 291 SLE------LLKFASEGRADGGNEARQAGKGTCPTSGSRKFQTLCH-ATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred hHH------HHhhhhhcccccccchhhcCCccCcccchhhhhhcCc-ccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 888 8889999999999999999999999988877655443 346889999999998765544333322222322
Q ss_pred EEE-EcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC----cCCCeeEEEecchhHHHhhhhhHHHHH----HHHH
Q psy1548 213 GVF-FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL----NLSLLKHFILDECDKMLEQLEMRRDVQ----EIFR 283 (448)
Q Consensus 213 ~~~-~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~----~~~~i~~lViDEah~l~~~~~~~~~~~----~i~~ 283 (448)
.++ +.+........++.+.+.+++++.|..+...+.-+.. .+-...+.+.||+|..... +..... .+.+
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~L~~~~~~~~~~~~~~~~~~~~~~~Y~~~--~~~~~~~~~R~L~~ 441 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAALAKSLCYNVPVFEELCKDTNSCALYLFP--TKALAQDQLRALSD 441 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHHhhhccccccHHHHHHHhcccceeeeecc--hhhHHHHHHHHHHH
Confidence 222 2222234445556555689999999988765533222 2344567999999976542 333333 3333
Q ss_pred hC-----CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcc------hHHHHHH---HHH
Q psy1548 284 SS-----PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKEN------EKNKKLF---ELL 349 (448)
Q Consensus 284 ~l-----~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~------~k~~~L~---~ll 349 (448)
.+ ..+.|++-.+||+...++....-+.-+...+...+. .+..-++.+++.++. +|...+. .++
T Consensus 442 L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li~~DG---SPs~~K~~V~WNP~~~P~~~~~~~~~i~E~s~~~ 518 (1034)
T KOG4150|consen 442 LIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELVTIDG---SPSSEKLFVLWNPSAPPTSKSEKSSKVVEVSHLF 518 (1034)
T ss_pred HHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEEEecC---CCCccceEEEeCCCCCCcchhhhhhHHHHHHHHH
Confidence 22 347799999999988876655544444444333333 355667777776531 2222222 222
Q ss_pred hh--CCCCeEEEEECccHHHHHHHHHHHhC----CC----cEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHH
Q psy1548 350 DV--LEFNQVVIFVKSVTRCIALSTLLSEQ----NF----PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAK 419 (448)
Q Consensus 350 ~~--~~~~~~IIF~~s~~~a~~l~~~L~~~----g~----~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~ 419 (448)
.. ..+-++|.||.+++-|+.+...-++. |- .+..+.||.+.++|.++..+.-.|+ +.=.++|..-+.+
T Consensus 519 ~~~i~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DRRKIE~~~F~G~--L~giIaTNALELG 596 (1034)
T KOG4150|consen 519 AEMVQHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDRRKIESDLFGGK--LCGIIATNALELG 596 (1034)
T ss_pred HHHHHcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhHHHHHHHhhCCe--eeEEEecchhhhc
Confidence 21 13458999999999999887655432 22 3677899999999999999999888 3344455543333
Q ss_pred HHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 420 ILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 420 ~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
. +|...-.+-...+|.++.+.++-.||
T Consensus 597 I--DIG~LDAVl~~GFP~S~aNl~QQ~GR 623 (1034)
T KOG4150|consen 597 I--DIGHLDAVLHLGFPGSIANLWQQAGR 623 (1034)
T ss_pred c--ccccceeEEEccCchhHHHHHHHhcc
Confidence 2 55555556667778887777766655
No 130
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.09 E-value=2.1e-09 Score=114.71 Aligned_cols=111 Identities=20% Similarity=0.183 Sum_probs=83.5
Q ss_pred EEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEE
Q psy1548 334 VKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITF 411 (448)
Q Consensus 334 ~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~ 411 (448)
++....+|...+...+... .+.++||||+|++.++.|+..|++.|++...+|+ .+.+|...+-.|..+. ..|++
T Consensus 576 vy~t~~eK~~Ali~~I~~~~~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~~--g~VtI 651 (1025)
T PRK12900 576 VYKTRREKYNAIVLKVEELQKKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQK--GAVTI 651 (1025)
T ss_pred EecCHHHHHHHHHHHHHHHhhCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCCC--CeEEE
Confidence 3445567999999988654 5779999999999999999999999999999997 6889999999998876 37777
Q ss_pred ecCh----hhHHHHHHHHHH--hcCCCCCCCccccccccccCC
Q psy1548 412 ASDE----NDAKILNNVQDR--FDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 412 ~t~~----~d~~~l~~i~~~--~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+|+- .|......+... +.+...+.|++.....++.||
T Consensus 652 ATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GR 694 (1025)
T PRK12900 652 ATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGR 694 (1025)
T ss_pred eccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhh
Confidence 7763 233332233332 344566777776666777776
No 131
>KOG0351|consensus
Probab=99.08 E-value=8.6e-11 Score=126.82 Aligned_cols=133 Identities=22% Similarity=0.270 Sum_probs=106.5
Q ss_pred cccccCCCcee--eeecCceeEEeecCCCcccccc---ccCC-CccccccccccccccchhhhhhhhccCceeeeccCCc
Q psy1548 9 EKLSCGSGNVF--LFFRAFIRFSSSFPHSKMADND---DLLD-YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82 (448)
Q Consensus 9 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (448)
..|.++.+.+| ||.|+||.|+|.....+....+ .... ..++..+.|...+...+.........+.....+|.|.
T Consensus 440 ~~L~l~~~~~~~~sfnR~NL~yeV~~k~~~~~~~~~~~~~~~~~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl 519 (941)
T KOG0351|consen 440 RSLGLRNPELFKSSFNRPNLKYEVSPKTDKDALLDILEESKLRHPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGL 519 (941)
T ss_pred HHhCCCCcceecccCCCCCceEEEEeccCccchHHHHHHhhhcCCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCC
Confidence 45788889999 9999999999999885432222 2222 2456778898888777766666666666677778877
Q ss_pred ccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
.......-+..|+...-+|.|||-+||||||++|||.|+||..|..++.|.|++|||||
T Consensus 520 ~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~GRAGR 578 (941)
T KOG0351|consen 520 PPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAGRAGR 578 (941)
T ss_pred CHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhccccCc
Confidence 77666666677777778999999999999999999999999999999999999999999
No 132
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.07 E-value=7e-10 Score=92.84 Aligned_cols=136 Identities=18% Similarity=0.193 Sum_probs=79.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
|+--++...+|+|||--.+.-++..-.. .+.++|+|.|||.++..+.+.++.. .+++.. .-.. . .
T Consensus 4 g~~~~~d~hpGaGKTr~vlp~~~~~~i~--~~~rvLvL~PTRvva~em~~aL~~~-----~~~~~t--~~~~-~---~-- 68 (148)
T PF07652_consen 4 GELTVLDLHPGAGKTRRVLPEIVREAIK--RRLRVLVLAPTRVVAEEMYEALKGL-----PVRFHT--NARM-R---T-- 68 (148)
T ss_dssp TEEEEEE--TTSSTTTTHHHHHHHHHHH--TT--EEEEESSHHHHHHHHHHTTTS-----SEEEES--TTSS--------
T ss_pred CceeEEecCCCCCCcccccHHHHHHHHH--ccCeEEEecccHHHHHHHHHHHhcC-----CcccCc--eeee-c---c--
Confidence 5556788999999998755545543322 3458999999999999988777643 222211 1100 0 0
Q ss_pred hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-hhhHHHHHHHHHhCCCCCeEEEEeccCCccH
Q psy1548 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-LEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~ 302 (448)
..+..-|-++|...+...+.+ .....+.+++|+||||..-.. ..++..+...-. . ..+.+|++|||.|...
T Consensus 69 ~~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~-~-g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 69 HFGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTDPTSIAARGYLRELAE-S-GEAKVIFMTATPPGSE 140 (148)
T ss_dssp --SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHH-T-TS-EEEEEESS-TT--
T ss_pred ccCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCCHHHHhhheeHHHhhh-c-cCeeEEEEeCCCCCCC
Confidence 112356888999998887766 555789999999999964221 123333333322 1 3467999999998664
No 133
>KOG1000|consensus
Probab=99.07 E-value=4.9e-09 Score=102.61 Aligned_cols=254 Identities=13% Similarity=0.114 Sum_probs=154.9
Q ss_pred hhhhhhhccccccce-eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 130 DTYLHRVARAGRFGT-KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~-~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
-+||.+ -.. ++..|..+++....|.|||..++.-+... .. ..-.||+||.. +-..|.+.+.+|....
T Consensus 200 lPFQre------Gv~faL~RgGR~llADeMGLGKTiQAlaIA~yy-ra---EwplliVcPAs-vrftWa~al~r~lps~- 267 (689)
T KOG1000|consen 200 LPFQRE------GVIFALERGGRILLADEMGLGKTIQALAIARYY-RA---EWPLLIVCPAS-VRFTWAKALNRFLPSI- 267 (689)
T ss_pred Cchhhh------hHHHHHhcCCeEEEecccccchHHHHHHHHHHH-hh---cCcEEEEecHH-HhHHHHHHHHHhcccc-
Confidence 445877 332 44568899999999999998865333322 11 22589999986 5567788888887543
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCC
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~ 288 (448)
..+.++.++.+..... -. ...|.|.+.+.+..+-. .+.-...+.+|+||+|.+-+ +-......++..+...
T Consensus 268 -~pi~vv~~~~D~~~~~---~t-~~~v~ivSye~ls~l~~--~l~~~~~~vvI~DEsH~Lk~--sktkr~Ka~~dllk~a 338 (689)
T KOG1000|consen 268 -HPIFVVDKSSDPLPDV---CT-SNTVAIVSYEQLSLLHD--ILKKEKYRVVIFDESHMLKD--SKTKRTKAATDLLKVA 338 (689)
T ss_pred -cceEEEecccCCcccc---cc-CCeEEEEEHHHHHHHHH--HHhcccceEEEEechhhhhc--cchhhhhhhhhHHHHh
Confidence 2355555554432211 11 24688989887754322 12223467899999997755 3344456666666666
Q ss_pred CeEEEEeccCC-------------------ccHHHHHHHhcCCC-eEEEEcCcc-------------------------c
Q psy1548 289 KQVMMFSATLS-------------------KEIRPVCKKFMHDP-MEVYVDDEA-------------------------K 323 (448)
Q Consensus 289 ~q~i~~SAT~~-------------------~~~~~~~~~~l~~~-~~i~~~~~~-------------------------~ 323 (448)
.++|++|.|.. +...++...|.... +.+..+... .
T Consensus 339 khvILLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~ 418 (689)
T KOG1000|consen 339 KHVILLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLK 418 (689)
T ss_pred hheEEecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence 77899999931 11222333332211 111111000 0
Q ss_pred ccccceeEEEEEcCc-------------------------------------chHHHHHHHHHhh------CCCCeEEEE
Q psy1548 324 LTLHGLQQHYVKLKE-------------------------------------NEKNKKLFELLDV------LEFNQVVIF 360 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~-------------------------------------~~k~~~L~~ll~~------~~~~~~IIF 360 (448)
..+..-.+..+.+.. .-|...+.+.+.. .++.+.+||
T Consensus 419 qLPpKrr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVF 498 (689)
T KOG1000|consen 419 QLPPKRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVF 498 (689)
T ss_pred hCCccceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEE
Confidence 001111111111110 0133333333333 135589999
Q ss_pred ECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
|....-.+.+...+.+.++..+-+.|..+..+|....+.|+..+
T Consensus 499 aHH~~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~se 542 (689)
T KOG1000|consen 499 AHHQIVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSE 542 (689)
T ss_pred ehhHHHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhcccc
Confidence 99999999999999999999999999999999999999999987
No 134
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.06 E-value=6.4e-08 Score=96.01 Aligned_cols=52 Identities=13% Similarity=0.167 Sum_probs=50.4
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
.+.+++|-+-|++-|+.|.++|.+.|+++.++|++...-+|.+++.+.+.|.
T Consensus 445 ~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G~ 496 (663)
T COG0556 445 KNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLGE 496 (663)
T ss_pred cCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcCC
Confidence 4679999999999999999999999999999999999999999999999999
No 135
>KOG0392|consensus
Probab=99.06 E-value=4.6e-09 Score=112.20 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=95.1
Q ss_pred ccCCCC----chhhhhhhccccccceeee--e--CcceeeeccCCChhHHHHHHHHHH-hhhccC-----CCeEEEEeec
Q psy1548 123 YDMPED----SDTYLHRVARAGRFGTKAV--L--GMDILCQAKSGMGKTAVFVLATLQ-QLETTD-----SNVYVLVMCH 188 (448)
Q Consensus 123 ~~~p~~----~~~yQ~~~~~~~~~~~~~~--~--g~~vli~apTGsGKT~~~~l~~l~-~l~~~~-----~~~~~lil~P 188 (448)
|.-|.+ +|.||++ -+.++. . +-+.|++...|-|||+..+--+.. ....+. ...-.|||||
T Consensus 966 y~Ip~pI~a~LRkYQqE------GVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCP 1039 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQE------GVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCP 1039 (1549)
T ss_pred cccccchhHHHHHHHHh------ccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECC
Confidence 445555 4999999 554443 2 468999999999999876433332 222211 2234899999
Q ss_pred cHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHH
Q psy1548 189 TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268 (448)
Q Consensus 189 t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l 268 (448)
.. |+--|..++.+|.. -+++....|+.......+.-.+ ..+|+|++.+.+.+-+.. +.-....|+|+||-|.+
T Consensus 1040 sT-LtGHW~~E~~kf~p---fL~v~~yvg~p~~r~~lR~q~~-~~~iiVtSYDv~RnD~d~--l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1040 ST-LTGHWKSEVKKFFP---FLKVLQYVGPPAERRELRDQYK-NANIIVTSYDVVRNDVDY--LIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred ch-hhhHHHHHHHHhcc---hhhhhhhcCChHHHHHHHhhcc-ccceEEeeHHHHHHHHHH--HHhcccceEEecCccee
Confidence 86 77777777777764 4577667766433222222222 369999999887643321 11123458999999976
Q ss_pred HhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 269 ~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
-+. ...+.+..+.+..+.+ +++|.|
T Consensus 1113 kN~---ktkl~kavkqL~a~hR-LILSGT 1137 (1549)
T KOG0392|consen 1113 KNS---KTKLTKAVKQLRANHR-LILSGT 1137 (1549)
T ss_pred cch---HHHHHHHHHHHhhcce-EEeeCC
Confidence 442 3334444444444444 455666
No 136
>KOG0389|consensus
Probab=99.04 E-value=3.8e-09 Score=108.54 Aligned_cols=131 Identities=17% Similarity=0.170 Sum_probs=86.7
Q ss_pred chhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 129 SDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+.+||.- -+.++. .+-+.|+....|-|||.. .++.+..+........-|||||+..|-++ .+++.+|+
T Consensus 400 LkdYQlv------GvNWL~Llyk~~l~gILADEMGLGKTiQ-vIaFlayLkq~g~~gpHLVVvPsSTleNW-lrEf~kwC 471 (941)
T KOG0389|consen 400 LKDYQLV------GVNWLLLLYKKKLNGILADEMGLGKTIQ-VIAFLAYLKQIGNPGPHLVVVPSSTLENW-LREFAKWC 471 (941)
T ss_pred ccchhhh------hHHHHHHHHHccccceehhhccCcchhH-HHHHHHHHHHcCCCCCcEEEecchhHHHH-HHHHHHhC
Confidence 5788888 555443 356789999999999955 44555555444444568999999987554 44566666
Q ss_pred ccCCCceEEEEEcCcccHHhHHHH-hcC--CCcEEEEcHHHHHHHHH-CCCCcCCCeeEEEecchhHHHh
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYL-KTH--NPQIVVGTPGRILALVR-NKKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l-~~~--~~~IlV~Tp~~l~~~l~-~~~~~~~~i~~lViDEah~l~~ 270 (448)
|.+++..++|......+.+.. ..+ ..+|+++|......--. +.-+.-.++.++|+||+|.+-+
T Consensus 472 ---Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN 538 (941)
T KOG0389|consen 472 ---PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKN 538 (941)
T ss_pred ---CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhc
Confidence 788999999998655444433 222 58999999865531100 0112235567899999996644
No 137
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.04 E-value=1.9e-07 Score=99.54 Aligned_cols=99 Identities=14% Similarity=0.191 Sum_probs=85.1
Q ss_pred HHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--------------
Q psy1548 341 KNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------- 404 (448)
Q Consensus 341 k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~-------------- 404 (448)
+...+...+... .+.++||||+|.+.|+.+++.|.+.|+++..+||++++.+|..+++.|+.|+
T Consensus 431 q~~~L~~~L~~~~~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g~i~vlV~t~~L~rGf 510 (652)
T PRK05298 431 QVDDLLSEIRKRVAKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLGEFDVLVGINLLREGL 510 (652)
T ss_pred cHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcCCceEEEEeCHHhCCc
Confidence 344555555432 4678999999999999999999999999999999999999999999999988
Q ss_pred ------------------------------------CceEEEEecC--------hhhHHHHHHHHHHhcCCCCCCCccc
Q psy1548 405 ------------------------------------KGLAITFASD--------ENDAKILNNVQDRFDVSISELPDEI 439 (448)
Q Consensus 405 ------------------------------------~g~~I~~~t~--------~~d~~~l~~i~~~~~~~~~~~p~~~ 439 (448)
.|.+|++++. ..+...+++||..++.++..+|..+
T Consensus 511 dlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~ 589 (652)
T PRK05298 511 DIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKITDSMQKAIDETERRREIQIAYNEEHGITPKTI 589 (652)
T ss_pred cccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCCCHHHHHHHHHHHHHHHHHHHhhhccCCCChhH
Confidence 7888999984 2478889999999999999999885
No 138
>KOG0390|consensus
Probab=99.03 E-value=2e-08 Score=105.58 Aligned_cols=160 Identities=14% Similarity=0.092 Sum_probs=95.8
Q ss_pred CCchhhhhhhccc------cccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCC-----eEEEEeeccHHHHHH
Q psy1548 127 EDSDTYLHRVARA------GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN-----VYVLVMCHTRELAFQ 195 (448)
Q Consensus 127 ~~~~~yQ~~~~~~------~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~-----~~~lil~Pt~~L~~q 195 (448)
..++++|+++.+. |...| ....-+|++-..|+|||+..+ +.+..+...... .+.|||+|.. |+..
T Consensus 237 ~~LrPHQ~EG~~FL~knl~g~~~~--~~~~GCImAd~~GlGKTlq~I-sflwtlLrq~P~~~~~~~k~lVV~P~s-Lv~n 312 (776)
T KOG0390|consen 237 KILRPHQREGFEFLYKNLAGLIRP--KNSGGCIMADEPGLGKTLQCI-SFIWTLLRQFPQAKPLINKPLVVAPSS-LVNN 312 (776)
T ss_pred hhcCchHHHHHHHHHhhhhccccc--CCCCceEeeCCCCcchHHHHH-HHHHHHHHhCcCccccccccEEEccHH-HHHH
Confidence 3357779996552 22222 122346777788999998754 444444333333 5899999986 7888
Q ss_pred HHHHHHHhhccCCCceEEEEEcCccc--HHhHHHH----hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 196 ISKEYERFSKYMSNIKVGVFFGGLPI--QKDEEYL----KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 196 ~~~~~~~~~~~~~~~~v~~~~g~~~~--~~~~~~l----~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
|.+++.+|.... .+....++|.... ......+ ......|++-+.+.+.+.... +....++++|+||.|++-
T Consensus 313 WkkEF~KWl~~~-~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~~--il~~~~glLVcDEGHrlk 389 (776)
T KOG0390|consen 313 WKKEFGKWLGNH-RINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASDYCRK--ILLIRPGLLVCDEGHRLK 389 (776)
T ss_pred HHHHHHHhcccc-ccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHHHHHH--HhcCCCCeEEECCCCCcc
Confidence 999999998753 5677777777652 1111111 111245788888888655442 335677899999999764
Q ss_pred hhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 270 EQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 270 ~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
.. ...+...+..+.-. +-|++|.|
T Consensus 390 N~---~s~~~kaL~~l~t~-rRVLLSGT 413 (776)
T KOG0390|consen 390 NS---DSLTLKALSSLKTP-RRVLLTGT 413 (776)
T ss_pred ch---hhHHHHHHHhcCCC-ceEEeeCC
Confidence 42 12222233333222 34566777
No 139
>KOG0924|consensus
Probab=99.02 E-value=9.9e-09 Score=103.89 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=134.3
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH-hhccCCCceEEEEEcCcccHHhHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER-FSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
...-++|.+.||||||....--++. ..-.....+-+.-|.|.-|..+.+.+.. +...+ +-.|+....-.+..
T Consensus 370 ~n~vvvivgETGSGKTTQl~QyL~e--dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~l-G~~VGYsIRFEdvT---- 442 (1042)
T KOG0924|consen 370 ENQVVVIVGETGSGKTTQLAQYLYE--DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTL-GDTVGYSIRFEDVT---- 442 (1042)
T ss_pred hCcEEEEEecCCCCchhhhHHHHHh--cccccCCeeeecCchHHHHHHHHHHHHHHhCCcc-ccccceEEEeeecC----
Confidence 3456889999999999763211111 1111222444555888877776555443 22222 33333222111111
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~ 306 (448)
.....|-+.|-+.|++-.... -.+.+...+|+||||.-.-+.+..-.+.+..-.-..+.++|.+||||.. +++.
T Consensus 443 ---~~~T~IkymTDGiLLrEsL~d-~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~a--~kf~ 516 (1042)
T KOG0924|consen 443 ---SEDTKIKYMTDGILLRESLKD-RDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMDA--QKFS 516 (1042)
T ss_pred ---CCceeEEEeccchHHHHHhhh-hhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeeccccH--HHHH
Confidence 112568899999987643322 2367788999999996432212111111111122346789999999864 4777
Q ss_pred HHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHH-HHHHHHhhC---CCCeEEEEECccHHHHHHHHHHHhC-----
Q psy1548 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNK-KLFELLDVL---EFNQVVIFVKSVTRCIALSTLLSEQ----- 377 (448)
Q Consensus 307 ~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~-~L~~ll~~~---~~~~~IIF~~s~~~a~~l~~~L~~~----- 377 (448)
..|..-|....-... ..+.-.|...+.++-.+ ++-..+.-+ ..|-++||....+..+..+..++..
T Consensus 517 nfFgn~p~f~IpGRT-----yPV~~~~~k~p~eDYVeaavkq~v~Ihl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~ 591 (1042)
T KOG0924|consen 517 NFFGNCPQFTIPGRT-----YPVEIMYTKTPVEDYVEAAVKQAVQIHLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLD 591 (1042)
T ss_pred HHhCCCceeeecCCc-----cceEEEeccCchHHHHHHHHhhheEeeccCCCCCEEEecCCCcchhHHHHHHHHHHHhhh
Confidence 766656654332222 22333444444433222 233333222 4568999999887766666555431
Q ss_pred -----CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 378 -----NFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 378 -----g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
++.+..+++.|+.+-+.++++.--.|.
T Consensus 592 ~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~v 623 (1042)
T KOG0924|consen 592 SAPTTDLAVLPIYSQLPADLQAKIFQKAEGGV 623 (1042)
T ss_pred cCCCCceEEEeehhhCchhhhhhhcccCCCCc
Confidence 677999999999998888766544443
No 140
>KOG0384|consensus
Probab=99.01 E-value=7.3e-10 Score=118.44 Aligned_cols=270 Identities=18% Similarity=0.243 Sum_probs=164.1
Q ss_pred CCchhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhccC-CCeEEEEeeccHHHHHHHHHHHH
Q psy1548 127 EDSDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
..+++||.+ -+..++ .+.|+|+.-..|.|||..- +..|..+.... -.+-.|||+|...+. .+.+.+.
T Consensus 369 ~~LRdyQLe------GlNWl~~~W~~~~n~ILADEmgLgktvqt-i~fl~~l~~~~~~~gpflvvvplst~~-~W~~ef~ 440 (1373)
T KOG0384|consen 369 NELRDYQLE------GLNWLLYSWYKRNNCILADEMGLGKTVQT-ITFLSYLFHSLQIHGPFLVVVPLSTIT-AWEREFE 440 (1373)
T ss_pred chhhhhhcc------cchhHHHHHHhcccceehhhcCCCcchHH-HHHHHHHHHhhhccCCeEEEeehhhhH-HHHHHHH
Confidence 457999999 776655 4789999999999999652 33333332211 122478888987665 4566788
Q ss_pred HhhccCCCceEEEEEcCcccHHhHHHHh---cC-----CCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhh
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLK---TH-----NPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~~~l~---~~-----~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~ 273 (448)
.|. +.++.+++|.......+.... .. .++++++|.+.++.--. .+.--...++++||||++-..
T Consensus 441 ~w~----~mn~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk~--~L~~i~w~~~~vDeahrLkN~-- 512 (1373)
T KOG0384|consen 441 TWT----DMNVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDKA--ELSKIPWRYLLVDEAHRLKND-- 512 (1373)
T ss_pred HHh----hhceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccHh--hhccCCcceeeecHHhhcCch--
Confidence 887 678888888876444333221 11 37899999988754221 111223457999999998643
Q ss_pred hHHHHHHHHHhCCCCCeEEEEecc-CCccHHHHHH--HhcCCCeE-----------------------------------
Q psy1548 274 MRRDVQEIFRSSPHTKQVMMFSAT-LSKEIRPVCK--KFMHDPME----------------------------------- 315 (448)
Q Consensus 274 ~~~~~~~i~~~l~~~~q~i~~SAT-~~~~~~~~~~--~~l~~~~~----------------------------------- 315 (448)
...+-..+..+.-+.++++ |.| +-+.++++.. .|+ .|..
T Consensus 513 -~~~l~~~l~~f~~~~rlli-tgTPlQNsikEL~sLl~Fl-~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~k 589 (1373)
T KOG0384|consen 513 -ESKLYESLNQFKMNHRLLI-TGTPLQNSLKELWSLLHFL-MPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLK 589 (1373)
T ss_pred -HHHHHHHHHHhcccceeee-cCCCccccHHHHHHHhccc-CCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHH
Confidence 2223333444444444444 455 3344433321 111 0100
Q ss_pred --------------EEEcCc------------------------cccccc--------ceeEEEEEcCcchH--------
Q psy1548 316 --------------VYVDDE------------------------AKLTLH--------GLQQHYVKLKENEK-------- 341 (448)
Q Consensus 316 --------------i~~~~~------------------------~~~~~~--------~i~~~~~~~~~~~k-------- 341 (448)
+.+.-. .....- .-.|-|+.-..+++
T Consensus 590 kdvekslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~ 669 (1373)
T KOG0384|consen 590 KDVEKSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDK 669 (1373)
T ss_pred hhhccCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhc
Confidence 000000 000000 00222333222221
Q ss_pred --HHHHHHHHhh-------------C--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 342 --NKKLFELLDV-------------L--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 342 --~~~L~~ll~~-------------~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
...|..+|.. + .++++|||...+.-.+-|+++|...+++.--+.|.+.-+-|..++..|....
T Consensus 670 ~~d~~L~~lI~sSGKlVLLDKLL~rLk~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 670 MRDEALQALIQSSGKLVLLDKLLPRLKEGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred chHHHHHHHHHhcCcEEeHHHHHHHHhcCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence 1234343322 1 4579999999999999999999999999999999999999999999998876
Q ss_pred ------------CceEEEEecCh
Q psy1548 405 ------------KGLAITFASDE 415 (448)
Q Consensus 405 ------------~g~~I~~~t~~ 415 (448)
.|+||++.|.+
T Consensus 750 SddFvFLLSTRAGGLGINLatAD 772 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATAD 772 (1373)
T ss_pred CCceEEEEecccCcccccccccc
Confidence 78888887764
No 141
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=99.00 E-value=2.5e-09 Score=102.74 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC---CeEEEEeeccHHHHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
+|...++.|.+.+++ ....+..|+++++.+|||+|||++|++|++..+...+. +.+++|.++|..+..|....++
T Consensus 5 FPy~~r~~Q~~~m~~--v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYEPYPIQYEFMEE--LKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHH--HHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 344445669996654 44555678999999999999999999999876654332 2489999999999998877777
Q ss_pred Hh
Q psy1548 202 RF 203 (448)
Q Consensus 202 ~~ 203 (448)
++
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 142
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=99.00 E-value=2.5e-09 Score=102.74 Aligned_cols=77 Identities=14% Similarity=0.133 Sum_probs=59.1
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC---CeEEEEeeccHHHHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
+|...++.|.+.+++ ....+..|+++++.+|||+|||++|++|++..+...+. +.+++|.++|..+..|....++
T Consensus 5 FPy~~r~~Q~~~m~~--v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYEPYPIQYEFMEE--LKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHH--HHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 344445669996654 44555678999999999999999999999876654332 2489999999999998877777
Q ss_pred Hh
Q psy1548 202 RF 203 (448)
Q Consensus 202 ~~ 203 (448)
++
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 65
No 143
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=98.99 E-value=7.3e-09 Score=109.26 Aligned_cols=127 Identities=20% Similarity=0.214 Sum_probs=91.3
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |.. ..-.+..|+ |....||-|||+++.+|++-.... |..+-|++..--||..=.+++..+.
T Consensus 78 r~ydV---Qli------GglvLh~G~--IAEMkTGEGKTLvAtLpayLnAL~---GkgVhVVTvNdYLA~RDae~mg~vy 143 (925)
T PRK12903 78 RPYDV---QII------GGIILDLGS--VAEMKTGEGKTITSIAPVYLNALT---GKGVIVSTVNEYLAERDAEEMGKVF 143 (925)
T ss_pred CcCch---HHH------HHHHHhcCC--eeeecCCCCccHHHHHHHHHHHhc---CCceEEEecchhhhhhhHHHHHHHH
Confidence 67788 888 333344553 799999999999999998654333 2347777888889887777888888
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCCC------CcCCCeeEEEecchhHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNKK------LNLSLLKHFILDECDKML 269 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~~------~~~~~i~~lViDEah~l~ 269 (448)
..+ +++|++...+.+.......+ .++|++||..-+ .++|+.+- .-...+.+.|+||+|.++
T Consensus 144 ~fL-GLsvG~i~~~~~~~~rr~aY---~~DItYgTn~E~gFDYLRDnm~~~~~~~vqR~~~faIVDEVDSIL 211 (925)
T PRK12903 144 NFL-GLSVGINKANMDPNLKREAY---ACDITYSVHSELGFDYLRDNMVSSKEEKVQRGLNFCLIDEVDSIL 211 (925)
T ss_pred HHh-CCceeeeCCCCChHHHHHhc---cCCCeeecCcccchhhhhhcccccHHHhcCcccceeeeccchhee
Confidence 888 99999998876655444433 379999998876 34444321 123567789999999764
No 144
>KOG0926|consensus
Probab=98.99 E-value=4.1e-09 Score=108.33 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=150.1
Q ss_pred eEeeccCCCCchhhhhhhc------cccccceeeeeCcceeeeccCCChhHHHHHHHH-HHhhhc----cCCCeEEEEee
Q psy1548 119 IVFNYDMPEDSDTYLHRVA------RAGRFGTKAVLGMDILCQAKSGMGKTAVFVLAT-LQQLET----TDSNVYVLVMC 187 (448)
Q Consensus 119 ~v~~~~~p~~~~~yQ~~~~------~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~-l~~l~~----~~~~~~~lil~ 187 (448)
+++....|..+ |..-- +-.+.+.++...--+||+|.||||||.. +|- |..... ...+.-+=|.-
T Consensus 238 ~yV~V~R~~EI---Q~sR~~LPI~aeEq~IMEaIn~n~vvIIcGeTGsGKTTQ--vPQFLYEAGf~s~~~~~~gmIGITq 312 (1172)
T KOG0926|consen 238 FYVIVSRPAEI---QESRLDLPIVAEEQRIMEAINENPVVIICGETGSGKTTQ--VPQFLYEAGFASEQSSSPGMIGITQ 312 (1172)
T ss_pred EEEEecCcHHH---HHHHhcCchhHHHHHHHHHhhcCCeEEEecCCCCCcccc--chHHHHHcccCCccCCCCCeeeecC
Confidence 45667788888 76510 0112444455556689999999999975 342 221111 11233566677
Q ss_pred ccHHHHHHHHHHHH-HhhccC-CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecch
Q psy1548 188 HTRELAFQISKEYE-RFSKYM-SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265 (448)
Q Consensus 188 Pt~~L~~q~~~~~~-~~~~~~-~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEa 265 (448)
|.|--|..+.+... .++. + ..+...+-+.++-.. ...|.++|-|.|+.-+.++ +.+.....||+|||
T Consensus 313 PRRVAaiamAkRVa~EL~~-~~~eVsYqIRfd~ti~e---------~T~IkFMTDGVLLrEi~~D-flL~kYSvIIlDEA 381 (1172)
T KOG0926|consen 313 PRRVAAIAMAKRVAFELGV-LGSEVSYQIRFDGTIGE---------DTSIKFMTDGVLLREIEND-FLLTKYSVIILDEA 381 (1172)
T ss_pred chHHHHHHHHHHHHHHhcc-CccceeEEEEeccccCC---------CceeEEecchHHHHHHHHh-HhhhhceeEEechh
Confidence 88876665554433 3333 3 123333334443211 2579999999998877654 34788889999999
Q ss_pred hHHHhh----hhhHHHHHHHHHhCCC------CCeEEEEeccCCccHHHHH--HHhcC-CCeEEEEcCcccccccceeEE
Q psy1548 266 DKMLEQ----LEMRRDVQEIFRSSPH------TKQVMMFSATLSKEIRPVC--KKFMH-DPMEVYVDDEAKLTLHGLQQH 332 (448)
Q Consensus 266 h~l~~~----~~~~~~~~~i~~~l~~------~~q~i~~SAT~~~~~~~~~--~~~l~-~~~~i~~~~~~~~~~~~i~~~ 332 (448)
|.-.-. .|+...+-.+-..+.+ ..++|+||||+.-. ++. +.++. -|-.+.++.. + -+..| |+
T Consensus 382 HERSvnTDILiGmLSRiV~LR~k~~ke~~~~kpLKLIIMSATLRVs--DFtenk~LFpi~pPlikVdAR-Q-fPVsI-HF 456 (1172)
T KOG0926|consen 382 HERSVNTDILIGMLSRIVPLRQKYYKEQCQIKPLKLIIMSATLRVS--DFTENKRLFPIPPPLIKVDAR-Q-FPVSI-HF 456 (1172)
T ss_pred hhccchHHHHHHHHHHHHHHHHHHhhhhcccCceeEEEEeeeEEec--ccccCceecCCCCceeeeecc-c-CceEE-Ee
Confidence 964221 1333333333333322 44789999997422 332 11222 2334444433 1 11222 22
Q ss_pred EEEcCcch---HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEE
Q psy1548 333 YVKLKENE---KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409 (448)
Q Consensus 333 ~~~~~~~~---k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I 409 (448)
--..+.+. -+...+.+=+.++.|-+|||+-...++..|++.|++. ++. .|++..-+.--+..+++++....+++
T Consensus 457 ~krT~~DYi~eAfrKtc~IH~kLP~G~ILVFvTGQqEV~qL~~kLRK~-~p~--~f~~~k~~k~~k~~~e~k~~~s~~~~ 533 (1172)
T KOG0926|consen 457 NKRTPDDYIAEAFRKTCKIHKKLPPGGILVFVTGQQEVDQLCEKLRKR-FPE--SFGGVKMKKNVKAFKELKENPSDIGD 533 (1172)
T ss_pred ccCCCchHHHHHHHHHHHHhhcCCCCcEEEEEeChHHHHHHHHHHHhh-Ccc--ccccchhhhhhhhccccccchhhhcc
Confidence 12222222 2333344445568889999999999999999999885 222 45655544445555666654433444
Q ss_pred EEec
Q psy1548 410 TFAS 413 (448)
Q Consensus 410 ~~~t 413 (448)
+--+
T Consensus 534 ~~k~ 537 (1172)
T KOG0926|consen 534 SNKT 537 (1172)
T ss_pred Cccc
Confidence 4333
No 145
>KOG0923|consensus
Probab=98.98 E-value=1.3e-08 Score=102.93 Aligned_cols=246 Identities=14% Similarity=0.134 Sum_probs=147.0
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHH-HhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATL-QQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLP 220 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l-~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~ 220 (448)
.+.++....-++|.|.||||||.. +|-. ......+++.++-+.-|.|--|..+...+.. .+ +++.+--+|-.-
T Consensus 273 ll~av~e~QVLiI~GeTGSGKTTQ--iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~---EM-gvkLG~eVGYsI 346 (902)
T KOG0923|consen 273 LLKAVKEHQVLIIVGETGSGKTTQ--IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAE---EM-GVKLGHEVGYSI 346 (902)
T ss_pred HHHHHHhCcEEEEEcCCCCCcccc--ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHH---Hh-CcccccccceEE
Confidence 444455566788999999999975 5532 2212223444566777998877776554432 22 333222222110
Q ss_pred cHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 221 ~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
.-++. -....-|-++|-|+|++-+.. ..++.+..+++|||||.-.-..+..-.+..-+....+.-++++.|||+..
T Consensus 347 RFEdc---TSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLKllIsSAT~DA 422 (902)
T KOG0923|consen 347 RFEDC---TSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLKLLISSATMDA 422 (902)
T ss_pred Eeccc---cCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcceEEeeccccCH
Confidence 00000 001245889999999875543 33478899999999995422112211122222334577889999999864
Q ss_pred cHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHH-HHHHHhhC---CCCeEEEEECccHHHHHHHHHHHh
Q psy1548 301 EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKK-LFELLDVL---EFNQVVIFVKSVTRCIALSTLLSE 376 (448)
Q Consensus 301 ~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~-L~~ll~~~---~~~~~IIF~~s~~~a~~l~~~L~~ 376 (448)
+ ++...|-.-|+...... ...+.-+|...++.+=.++ +..++.-+ +.+-+|||....++.+...+.|.+
T Consensus 423 e--kFS~fFDdapIF~iPGR-----RyPVdi~Yt~~PEAdYldAai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~ 495 (902)
T KOG0923|consen 423 E--KFSAFFDDAPIFRIPGR-----RYPVDIFYTKAPEADYLDAAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKE 495 (902)
T ss_pred H--HHHHhccCCcEEeccCc-----ccceeeecccCCchhHHHHHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHH
Confidence 4 55554444444333222 2345556666666554443 33444332 567899999999998888887765
Q ss_pred C---------CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 377 Q---------NFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 377 ~---------g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
. .+-+..+|++++.+.+.++++--=.|.
T Consensus 496 ~~~~LGski~eliv~PiYaNLPselQakIFePtP~ga 532 (902)
T KOG0923|consen 496 RCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPGA 532 (902)
T ss_pred HHHHhccccceEEEeeccccCChHHHHhhcCCCCCCc
Confidence 3 234789999999999999887655543
No 146
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=98.96 E-value=2.4e-09 Score=103.50 Aligned_cols=143 Identities=15% Similarity=0.157 Sum_probs=81.3
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCC---CeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDS---NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~---~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
..+.+++...+|+|||...+..+. .+..... ...+|||||. .+..|+..++.++.... ..++..+.|.......
T Consensus 24 ~~~g~lL~de~GlGKT~~~i~~~~-~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~~~~~~-~~~v~~~~~~~~~~~~ 100 (299)
T PF00176_consen 24 PPRGGLLADEMGLGKTITAIALIS-YLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEKWFDPD-SLRVIIYDGDSERRRL 100 (299)
T ss_dssp TT-EEEE---TTSSHHHHHHHHHH-HHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHHHSGT--TS-EEEESSSCHHHHT
T ss_pred CCCCEEEEECCCCCchhhhhhhhh-hhhhccccccccceeEeecc-chhhhhhhhhccccccc-cccccccccccccccc
Confidence 346889999999999987654443 3322221 1259999999 77889999999998643 5666666665511111
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHC---CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccC
Q psy1548 225 EEYLKTHNPQIVVGTPGRILALVRN---KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~~l~~---~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~ 298 (448)
... .....+++|+|.+.+...... ..+..-+.+++|+||+|.+-+. .......+..+. ....+++|||+
T Consensus 101 ~~~-~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~---~s~~~~~l~~l~-~~~~~lLSgTP 172 (299)
T PF00176_consen 101 SKN-QLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNK---DSKRYKALRKLR-ARYRWLLSGTP 172 (299)
T ss_dssp TSS-SCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTT---TSHHHHHHHCCC-ECEEEEE-SS-
T ss_pred ccc-ccccceeeeccccccccccccccccccccccceeEEEecccccccc---cccccccccccc-cceEEeecccc
Confidence 111 112478999999998811000 1111234789999999988432 222333333354 56678899995
No 147
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=98.94 E-value=4.8e-10 Score=121.62 Aligned_cols=135 Identities=21% Similarity=0.207 Sum_probs=96.4
Q ss_pred cccccCCCcee--eeecCceeEEeecCCCcc-ccccccCC--CccccccccccccccchhhhhhhhccCceeeeccCCcc
Q psy1548 9 EKLSCGSGNVF--LFFRAFIRFSSSFPHSKM-ADNDDLLD--YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFR 83 (448)
Q Consensus 9 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (448)
..|.+....+| +|.|+|+.|.+.....+. .+...+.. ..++..+.|...+...+.........+.....+|.+..
T Consensus 636 ~~L~l~~~~vfr~Sf~RpNL~y~Vv~k~kk~le~L~~~I~~~~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs 715 (1195)
T PLN03137 636 QALGLVNCVVFRQSFNRPNLWYSVVPKTKKCLEDIDKFIKENHFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMD 715 (1195)
T ss_pred HHcCCCCcEEeecccCccceEEEEeccchhHHHHHHHHHHhcccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCC
Confidence 35666677777 999999999887654331 11111211 12456678887777666666666666766777776654
Q ss_pred cCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 84 DFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.-....-+..+.....+|+|||+++|||||+++|++|+||..|..++.|.|++|||||..
T Consensus 716 ~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAGRDG 775 (1195)
T PLN03137 716 PAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAGRDG 775 (1195)
T ss_pred HHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccCCCC
Confidence 433333333444455699999999999999999999999999999999999999999943
No 148
>KOG0953|consensus
Probab=98.89 E-value=5.8e-09 Score=103.49 Aligned_cols=223 Identities=17% Similarity=0.141 Sum_probs=147.4
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
=++-+|||.||||.- +|+++...+ ..++--|.|-||.++++.+... ++.|-+++|......... .
T Consensus 193 Ii~H~GPTNSGKTy~----ALqrl~~ak---sGvycGPLrLLA~EV~~r~na~-----gipCdL~TGeE~~~~~~~---~ 257 (700)
T KOG0953|consen 193 IIMHVGPTNSGKTYR----ALQRLKSAK---SGVYCGPLRLLAHEVYDRLNAL-----GIPCDLLTGEERRFVLDN---G 257 (700)
T ss_pred EEEEeCCCCCchhHH----HHHHHhhhc---cceecchHHHHHHHHHHHhhhc-----CCCccccccceeeecCCC---C
Confidence 355679999999965 567765544 4678899999999999988876 677778887643222211 1
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
+.++.+-||-++..- -..+++.||||+++|-+...-+...+.++.....+..+++= +.+.++.++.+
T Consensus 258 ~~a~hvScTVEM~sv--------~~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdEiHLCGe-----psvldlV~~i~ 324 (700)
T KOG0953|consen 258 NPAQHVSCTVEMVSV--------NTPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADEIHLCGE-----PSVLDLVRKIL 324 (700)
T ss_pred CcccceEEEEEEeec--------CCceEEEEehhHHhhcCcccchHHHHHHHhhhhhhhhccCC-----chHHHHHHHHH
Confidence 235677777664321 23467899999999877622233444555554445444442 44556666655
Q ss_pred C---CCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeC
Q psy1548 311 H---DPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHR 386 (448)
Q Consensus 311 ~---~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~ 386 (448)
. +.+.+ +.|....+-.-.+.+..-++....|-+|| |-|++..-.+...+.+.|.. ++.++|
T Consensus 325 k~TGd~vev--------------~~YeRl~pL~v~~~~~~sl~nlk~GDCvV-~FSkk~I~~~k~kIE~~g~~k~aVIYG 389 (700)
T KOG0953|consen 325 KMTGDDVEV--------------REYERLSPLVVEETALGSLSNLKPGDCVV-AFSKKDIFTVKKKIEKAGNHKCAVIYG 389 (700)
T ss_pred hhcCCeeEE--------------EeecccCcceehhhhhhhhccCCCCCeEE-EeehhhHHHHHHHHHHhcCcceEEEec
Confidence 3 22221 12222222222234555566666665554 55788889999999988766 999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 387 GMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
+++++.|...-..|.+......|.++|+.-
T Consensus 390 sLPPeTr~aQA~~FNd~~~e~dvlVAsDAI 419 (700)
T KOG0953|consen 390 SLPPETRLAQAALFNDPSNECDVLVASDAI 419 (700)
T ss_pred CCCCchhHHHHHHhCCCCCccceEEeeccc
Confidence 999999999999999977667888887753
No 149
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=98.85 E-value=1.6e-08 Score=111.80 Aligned_cols=79 Identities=15% Similarity=0.212 Sum_probs=54.5
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHH----HHHhhccCC
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE----YERFSKYMS 208 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~----~~~~~~~~~ 208 (448)
|.+.+.+ ....+..++.+++.||||+|||++|++|++..... .+.+++|-++|+.|-+|+... ++++...
T Consensus 262 Q~~m~~~--v~~~l~~~~~~~iEA~TGtGKTlaYLlpa~~~a~~--~~~~vvIsT~T~~LQ~Ql~~kDiP~L~~~~~~-- 335 (928)
T PRK08074 262 QQEMMKE--VYTALRDSEHALIEAGTGTGKSLAYLLPAAYFAKK--KEEPVVISTYTIQLQQQLLEKDIPLLQKIFPF-- 335 (928)
T ss_pred HHHHHHH--HHHHHhcCCCEEEECCCCCchhHHHHHHHHHHhhc--cCCeEEEEcCCHHHHHHHHHhhHHHHHHHcCC--
Confidence 6663331 22344457889999999999999999999875432 245899999999999997652 3433321
Q ss_pred CceEEEEEc
Q psy1548 209 NIKVGVFFG 217 (448)
Q Consensus 209 ~~~v~~~~g 217 (448)
++++.++-|
T Consensus 336 ~~~~~~lKG 344 (928)
T PRK08074 336 PVEAALLKG 344 (928)
T ss_pred CceEEEEEc
Confidence 455555554
No 150
>KOG1002|consensus
Probab=98.84 E-value=1e-07 Score=93.48 Aligned_cols=126 Identities=22% Similarity=0.231 Sum_probs=84.9
Q ss_pred chhhhhhhccccccceeeeeC-----cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 129 SDTYLHRVARAGRFGTKAVLG-----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g-----~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
+-+||.+ .+.++... .-.++....|+|||...+..++..+ .+..+||++|+.+|. |+.+.+.++
T Consensus 185 LL~fQkE------~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~----~ra~tLVvaP~VAlm-QW~nEI~~~ 253 (791)
T KOG1002|consen 185 LLPFQKE------GLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEV----DRAPTLVVAPTVALM-QWKNEIERH 253 (791)
T ss_pred chhhhHH------HHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhcc----ccCCeeEEccHHHHH-HHHHHHHHh
Confidence 4567888 44444332 3457788999999988665555532 334599999999985 677888888
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-------------cCCCee--EEEecchhHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-------------NLSLLK--HFILDECDKM 268 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~~i~--~lViDEah~l 268 (448)
... ..++...+|. ........+.+ ++++.+|...+.+..++... .+.+++ .+|+||||.+
T Consensus 254 T~g--slkv~~YhG~-~R~~nikel~~--YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~I 328 (791)
T KOG1002|consen 254 TSG--SLKVYIYHGA-KRDKNIKELMN--YDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNI 328 (791)
T ss_pred ccC--ceEEEEEecc-cccCCHHHhhc--CcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhccc
Confidence 763 5666665554 44556666665 79999999988776654211 133344 4999999966
Q ss_pred Hh
Q psy1548 269 LE 270 (448)
Q Consensus 269 ~~ 270 (448)
-+
T Consensus 329 K~ 330 (791)
T KOG1002|consen 329 KD 330 (791)
T ss_pred cc
Confidence 43
No 151
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.83 E-value=4.5e-07 Score=95.37 Aligned_cols=233 Identities=15% Similarity=0.182 Sum_probs=139.5
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcC
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 231 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~ 231 (448)
.++.+|.|||||.+..-++-+.+. ....++|+|+..+.|+.+....++...-. +.....-.++.. +...
T Consensus 52 ~vVRSpMGTGKTtaLi~wLk~~l~--~~~~~VLvVShRrSL~~sL~~rf~~~~l~--gFv~Y~d~~~~~-------i~~~ 120 (824)
T PF02399_consen 52 LVVRSPMGTGKTTALIRWLKDALK--NPDKSVLVVSHRRSLTKSLAERFKKAGLS--GFVNYLDSDDYI-------IDGR 120 (824)
T ss_pred EEEECCCCCCcHHHHHHHHHHhcc--CCCCeEEEEEhHHHHHHHHHHHHhhcCCC--cceeeecccccc-------cccc
Confidence 578899999999765443333322 23458999999999999988887754210 222111111111 1111
Q ss_pred CCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHH------H-HHHhCCCCCeEEEEeccCCccHHH
Q psy1548 232 NPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQ------E-IFRSSPHTKQVMMFSATLSKEIRP 304 (448)
Q Consensus 232 ~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~------~-i~~~l~~~~q~i~~SAT~~~~~~~ 304 (448)
+.+-++++.++|.++.. -.+.+.++|||||+-..+.. -+.+.++ . +...+.....+|++-|+++...-+
T Consensus 121 ~~~rLivqIdSL~R~~~---~~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~~tvd 196 (824)
T PF02399_consen 121 PYDRLIVQIDSLHRLDG---SLLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLNDQTVD 196 (824)
T ss_pred ccCeEEEEehhhhhccc---ccccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCHHHHH
Confidence 24677778777765532 23567899999999988775 3322222 2 233445667899999999999999
Q ss_pred HHHHhcCCCe-EEEEcCccccc-ccceeEEEEE----------------------------------cCcchHHHHHHHH
Q psy1548 305 VCKKFMHDPM-EVYVDDEAKLT-LHGLQQHYVK----------------------------------LKENEKNKKLFEL 348 (448)
Q Consensus 305 ~~~~~l~~~~-~i~~~~~~~~~-~~~i~~~~~~----------------------------------~~~~~k~~~L~~l 348 (448)
++..+.++.. .+....- ... ..+-...++. ....+.......+
T Consensus 197 Fl~~~Rp~~~i~vI~n~y-~~~~fs~R~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~~~L 275 (824)
T PF02399_consen 197 FLASCRPDENIHVIVNTY-ASPGFSNRRCTFLRSLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFFSEL 275 (824)
T ss_pred HHHHhCCCCcEEEEEeee-ecCCcccceEEEecccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHHHHH
Confidence 9888765433 3322211 100 0000000000 0001123334444
Q ss_pred HhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 349 LDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 349 l~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+... .++++-||++|...++.+++.....+..+..++|.-+..+. +.|++-.
T Consensus 276 ~~~L~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~dv----~~W~~~~ 328 (824)
T PF02399_consen 276 LARLNAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLEDV----ESWKKYD 328 (824)
T ss_pred HHHHhCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcccc----cccccee
Confidence 4443 35678899999999999999888888888888887666522 4576654
No 152
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=98.80 E-value=3.3e-07 Score=98.82 Aligned_cols=153 Identities=18% Similarity=0.177 Sum_probs=93.1
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH---
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE--- 225 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~--- 225 (448)
|-=++-.|.||+|||++= .-+++.+.....+.|..|-.-.|.|-.|.-+.+++-.+.. +-...++.|+....+--
T Consensus 431 GfF~vNMASTGcGKT~aN-ARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L~-~ddLAVlIGs~Av~~L~e~~ 508 (1110)
T TIGR02562 431 GAFGVNMASTGCGKTLAN-ARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNLS-DDDLAVLIGGTAVQTLFDLS 508 (1110)
T ss_pred CeEEEEecCCCcchHHHH-HHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCCC-ccceEEEECHHHHHHHHHHH
Confidence 334566799999999874 4455566666677788888888888888888877654332 44445555543211000
Q ss_pred ----------------------------------------HHHhc-------CCCcEEEEcHHHHHHHHHC---CCCcCC
Q psy1548 226 ----------------------------------------EYLKT-------HNPQIVVGTPGRILALVRN---KKLNLS 255 (448)
Q Consensus 226 ----------------------------------------~~l~~-------~~~~IlV~Tp~~l~~~l~~---~~~~~~ 255 (448)
..+.. -...++|||++.++..... +...+.
T Consensus 509 ~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V~TIDQlL~a~~~~r~~~~~l~ 588 (1110)
T TIGR02562 509 KEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLVCTIDHLIPATESHRGGHHIAP 588 (1110)
T ss_pred hhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEEecHHHHHHHhhhcccchhHHH
Confidence 00000 0246999999999877622 122111
Q ss_pred C----eeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCccHHHH
Q psy1548 256 L----LKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 256 ~----i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~~~~~ 305 (448)
. =+.|||||+|.+-. .....+..++..+. -..+++++|||+|+.+...
T Consensus 589 ll~La~svlVlDEVHaYD~--~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~~~ 641 (1110)
T TIGR02562 589 MLRLMSSDLILDEPDDYEP--EDLPALLRLVQLAGLLGSRVLLSSATLPPALVKT 641 (1110)
T ss_pred HHHhcCCCEEEECCccCCH--HHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHH
Confidence 1 13699999995433 33334444444322 2567999999999975443
No 153
>KOG0925|consensus
Probab=98.71 E-value=2.3e-07 Score=90.94 Aligned_cols=256 Identities=16% Similarity=0.139 Sum_probs=144.1
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|...+.++.-.+-+.+.. .. |+..|+.+ .+..+....-++++|.|
T Consensus 24 ~Npf~~~p~s~rY~~ilk~R~------------------------~L--Pvw~~k~~------F~~~l~~nQ~~v~vGet 71 (699)
T KOG0925|consen 24 INPFNGKPYSQRYYDILKKRR------------------------EL--PVWEQKEE------FLKLLLNNQIIVLVGET 71 (699)
T ss_pred cCCCCCCcCcHHHHHHHHHHh------------------------cC--chHHhHHH------HHHHHhcCceEEEEecC
Confidence 345788888888777776643 22 45555666 66677778889999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||...--..+....... ..+...-|.|--|.++... .+..+ ++..+--.|-.-..++.. ....-+-++
T Consensus 72 gsGKttQiPq~~~~~~~~~~--~~v~CTQprrvaamsva~R---VadEM-Dv~lG~EVGysIrfEdC~---~~~T~Lky~ 142 (699)
T KOG0925|consen 72 GSGKTTQIPQFVLEYELSHL--TGVACTQPRRVAAMSVAQR---VADEM-DVTLGEEVGYSIRFEDCT---SPNTLLKYC 142 (699)
T ss_pred CCCccccCcHHHHHHHHhhc--cceeecCchHHHHHHHHHH---HHHHh-ccccchhccccccccccC---ChhHHHHHh
Confidence 99999652212222222211 2455566888777775443 33344 555544444321111100 000012234
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhh-hhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQL-EMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~-~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
|-+.|++-.-+.. .+.+..++|+||||.-.-.. -....++.+...- ++.++|.+|||+... ++ +.|..++-.+.
T Consensus 143 tDgmLlrEams~p-~l~~y~viiLDeahERtlATDiLmGllk~v~~~r-pdLk~vvmSatl~a~--Kf-q~yf~n~Pll~ 217 (699)
T KOG0925|consen 143 TDGMLLREAMSDP-LLGRYGVIILDEAHERTLATDILMGLLKEVVRNR-PDLKLVVMSATLDAE--KF-QRYFGNAPLLA 217 (699)
T ss_pred cchHHHHHHhhCc-ccccccEEEechhhhhhHHHHHHHHHHHHHHhhC-CCceEEEeecccchH--HH-HHHhCCCCeee
Confidence 5555544333222 36788999999999642110 2233344444444 488999999997533 44 44555555554
Q ss_pred EcCcccccccceeEEEEEcCcchHH-HHHHHHHhh---CCCCeEEEEECccHHHHHHHHHHHhC---------CCcEEEE
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKN-KKLFELLDV---LEFNQVVIFVKSVTRCIALSTLLSEQ---------NFPAVSI 384 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~-~~L~~ll~~---~~~~~~IIF~~s~~~a~~l~~~L~~~---------g~~~~~l 384 (448)
+... +.++.+|..-.+.+-+ .++...+.- ...|-+++|....++.+..++.+.+. ...|..+
T Consensus 218 vpg~-----~PvEi~Yt~e~erDylEaairtV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PL 292 (699)
T KOG0925|consen 218 VPGT-----HPVEIFYTPEPERDYLEAAIRTVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPL 292 (699)
T ss_pred cCCC-----CceEEEecCCCChhHHHHHHHHHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEec
Confidence 4322 2333344333333333 333333333 35678999999999999999888743 2457888
Q ss_pred e
Q psy1548 385 H 385 (448)
Q Consensus 385 h 385 (448)
|
T Consensus 293 y 293 (699)
T KOG0925|consen 293 Y 293 (699)
T ss_pred C
Confidence 8
No 154
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=98.68 E-value=1.4e-07 Score=79.14 Aligned_cols=114 Identities=25% Similarity=0.255 Sum_probs=86.1
Q ss_pred eEEEEEcCcchHHHHHHHHHhhCC--CCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCce
Q psy1548 330 QQHYVKLKENEKNKKLFELLDVLE--FNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGL 407 (448)
Q Consensus 330 ~~~~~~~~~~~k~~~L~~ll~~~~--~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~ 407 (448)
.+.+...+ +.|...+..++.... ++++||||++...++.+++.|.+.+.++..+||+++..+|..+++.|+++. .
T Consensus 3 ~~~~~~~~-~~k~~~i~~~i~~~~~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~--~ 79 (131)
T cd00079 3 KQYVLPVE-DEKLEALLELLKEHLKKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREGE--I 79 (131)
T ss_pred EEEEEECC-HHHHHHHHHHHHhcccCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcCC--C
Confidence 34444433 368888888887663 779999999999999999999998999999999999999999999999987 5
Q ss_pred EEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 408 AITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 408 ~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.|+++|.....++ ++...-.+-+...|.+...+.++.||
T Consensus 80 ~ili~t~~~~~G~--d~~~~~~vi~~~~~~~~~~~~Q~~GR 118 (131)
T cd00079 80 VVLVATDVIARGI--DLPNVSVVINYDLPWSPSSYLQRIGR 118 (131)
T ss_pred cEEEEcChhhcCc--ChhhCCEEEEeCCCCCHHHheecccc
Confidence 6666666432222 34433334445556667777788887
No 155
>KOG0353|consensus
Probab=98.62 E-value=2.7e-08 Score=94.44 Aligned_cols=116 Identities=17% Similarity=0.215 Sum_probs=85.9
Q ss_pred eeecCceeEEeec-CCCcccccccc-----CCCccccccccccccccchhhhhhhhccCceeeeccCCcccCCCCHHHHH
Q psy1548 20 LFFRAFIRFSSSF-PHSKMADNDDL-----LDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILR 93 (448)
Q Consensus 20 ~~~r~~~~~~~~~-~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (448)
+|.|+||+|.+.. |.+..+-.+++ -+|...+.+.|....+..+.........|.....++...+-...+.--..
T Consensus 283 ~fnr~nl~yev~qkp~n~dd~~edi~k~i~~~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~ 362 (695)
T KOG0353|consen 283 GFNRPNLKYEVRQKPGNEDDCIEDIAKLIKGDFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQG 362 (695)
T ss_pred ccCCCCceeEeeeCCCChHHHHHHHHHHhccccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccc
Confidence 8999999998765 55542222222 23455677888887777777666666666666556665554444444566
Q ss_pred HHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhh
Q psy1548 94 AIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135 (448)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~ 135 (448)
|+...-+|.|+|-+||||||+|+||+|+|-..|.+++.|.+.
T Consensus 363 w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyqa 404 (695)
T KOG0353|consen 363 WIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQA 404 (695)
T ss_pred ccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHHH
Confidence 777777999999999999999999999999999999998885
No 156
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.59 E-value=3.3e-07 Score=86.10 Aligned_cols=130 Identities=23% Similarity=0.239 Sum_probs=92.3
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
..|..+ |.. ++-.+..|+ |++..||-|||++..+|+.-.... |..+-|++.+.-||..=.+.+..+
T Consensus 76 ~~p~~v---Qll------~~l~L~~G~--laEm~TGEGKTli~~l~a~~~AL~---G~~V~vvT~NdyLA~RD~~~~~~~ 141 (266)
T PF07517_consen 76 LRPYDV---QLL------GALALHKGR--LAEMKTGEGKTLIAALPAALNALQ---GKGVHVVTSNDYLAKRDAEEMRPF 141 (266)
T ss_dssp ----HH---HHH------HHHHHHTTS--EEEESTTSHHHHHHHHHHHHHHTT---SS-EEEEESSHHHHHHHHHHHHHH
T ss_pred CcccHH---HHh------hhhhcccce--eEEecCCCCcHHHHHHHHHHHHHh---cCCcEEEeccHHHhhccHHHHHHH
Confidence 367777 888 444444444 999999999999998887665543 346888999999999988899999
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHH-HHHCC----C--CcCCCeeEEEecchhHHHhh
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA-LVRNK----K--LNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~-~l~~~----~--~~~~~i~~lViDEah~l~~~ 271 (448)
...+ +++++..+++.+......... ++|+++|...+.- .++.. . .....+.++|+||+|.++=+
T Consensus 142 y~~L-Glsv~~~~~~~~~~~r~~~Y~---~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~LiD 212 (266)
T PF07517_consen 142 YEFL-GLSVGIITSDMSSEERREAYA---ADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSILID 212 (266)
T ss_dssp HHHT-T--EEEEETTTEHHHHHHHHH---SSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHTTT
T ss_pred HHHh-hhccccCccccCHHHHHHHHh---CcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEEEe
Confidence 9998 999999999987554433343 5899999998853 44321 1 11467889999999987643
No 157
>PRK14873 primosome assembly protein PriA; Provisional
Probab=98.57 E-value=8.5e-07 Score=93.97 Aligned_cols=140 Identities=16% Similarity=0.127 Sum_probs=94.4
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh---HHHH
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD---EEYL 228 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l 228 (448)
.+..+.+|||||.+|+-.+-..+.. |.++|+++|...|..|+.+.++...+ +..+..++++.+..+. +...
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~~---Gk~vLvLvPEi~lt~q~~~rl~~~f~---~~~v~~lhS~l~~~~R~~~w~~~ 236 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLRA---GRGALVVVPDQRDVDRLEAALRALLG---AGDVAVLSAGLGPADRYRRWLAV 236 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHHc---CCeEEEEecchhhHHHHHHHHHHHcC---CCcEEEECCCCCHHHHHHHHHHH
Confidence 3444446999999998776665543 44799999999999999888887653 2567778877665543 3445
Q ss_pred hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHH-hh-hhhH---HHHHHHHHhCCCCCeEEEEeccCCccHH
Q psy1548 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML-EQ-LEMR---RDVQEIFRSSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~-~~-~~~~---~~~~~i~~~l~~~~q~i~~SAT~~~~~~ 303 (448)
..+..+|+|||-.-+. ..++++.+||+||=|.-. .. ...+ .++ .+++....+..+|+.|||.+-+..
T Consensus 237 ~~G~~~IViGtRSAvF-------aP~~~LgLIIvdEEhd~sykq~~~p~yhaRdv-A~~Ra~~~~~~lvLgSaTPSles~ 308 (665)
T PRK14873 237 LRGQARVVVGTRSAVF-------APVEDLGLVAIWDDGDDLLAEPRAPYPHAREV-ALLRAHQHGCALLIGGHARTAEAQ 308 (665)
T ss_pred hCCCCcEEEEcceeEE-------eccCCCCEEEEEcCCchhhcCCCCCCccHHHH-HHHHHHHcCCcEEEECCCCCHHHH
Confidence 6777899999964432 347889999999998431 11 0111 122 223333467789999999775544
Q ss_pred HH
Q psy1548 304 PV 305 (448)
Q Consensus 304 ~~ 305 (448)
..
T Consensus 309 ~~ 310 (665)
T PRK14873 309 AL 310 (665)
T ss_pred HH
Confidence 33
No 158
>KOG4439|consensus
Probab=98.56 E-value=1.3e-06 Score=89.31 Aligned_cols=116 Identities=20% Similarity=0.249 Sum_probs=74.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhc-----c--CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCccc
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLET-----T--DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~-----~--~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 221 (448)
+.-.|+....|-|||+..+-.++.+-.. . .....+|||||.. |..||..++.+-.... .++|.+++|....
T Consensus 345 ~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~~Ev~~rl~~n-~LsV~~~HG~n~r 422 (901)
T KOG4439|consen 345 PSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWEAEVARRLEQN-ALSVYLYHGPNKR 422 (901)
T ss_pred CCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHHHHHHHHHhhc-ceEEEEecCCccc
Confidence 4567889999999999765555543211 1 1112599999987 6677777766544433 5788888887754
Q ss_pred HHhHHHHhcCCCcEEEEcHHHHHH----HHHCC--CCcCCCe--eEEEecchhHH
Q psy1548 222 QKDEEYLKTHNPQIVVGTPGRILA----LVRNK--KLNLSLL--KHFILDECDKM 268 (448)
Q Consensus 222 ~~~~~~l~~~~~~IlV~Tp~~l~~----~l~~~--~~~~~~i--~~lViDEah~l 268 (448)
.-....+.. +||||+|..-+.. -+... .-.+-+| ..||+||||.+
T Consensus 423 ~i~~~~L~~--YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~I 475 (901)
T KOG4439|consen 423 EISAKELRK--YDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNI 475 (901)
T ss_pred cCCHHHHhh--cceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhh
Confidence 445555655 7999999876544 11111 1112233 35999999965
No 159
>KOG0952|consensus
Probab=98.54 E-value=3.3e-08 Score=104.69 Aligned_cols=240 Identities=18% Similarity=0.208 Sum_probs=144.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
..++++-+|||+|||++|.+.+...+...+. .++++++|..+|+..-.+........ +++++.-+.|+.... ...+
T Consensus 943 d~~~~~g~ptgsgkt~~ae~a~~~~~~~~p~-~kvvyIap~kalvker~~Dw~~r~~~-~g~k~ie~tgd~~pd--~~~v 1018 (1230)
T KOG0952|consen 943 DLNFLLGAPTGSGKTVVAELAIFRALSYYPG-SKVVYIAPDKALVKERSDDWSKRDEL-PGIKVIELTGDVTPD--VKAV 1018 (1230)
T ss_pred chhhhhcCCccCcchhHHHHHHHHHhccCCC-ccEEEEcCCchhhcccccchhhhccc-CCceeEeccCccCCC--hhhe
Confidence 5789999999999999999998877655544 69999999999988755555544333 378888888887544 2233
Q ss_pred hcCCCcEEEEcHHHHHHHHHC--CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh-------CCCCCeEEEEeccCC
Q psy1548 229 KTHNPQIVVGTPGRILALVRN--KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS-------SPHTKQVMMFSATLS 299 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~-------l~~~~q~i~~SAT~~ 299 (448)
. .++++|+||+++-...++ ..-.+.++..+|+||.|++.+ +..+.++.+... +++.++.+++|.-+
T Consensus 1019 ~--~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~--~rgPVle~ivsr~n~~s~~t~~~vr~~glsta~- 1093 (1230)
T KOG0952|consen 1019 R--EADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGE--DRGPVLEVIVSRMNYISSQTEEPVRYLGLSTAL- 1093 (1230)
T ss_pred e--cCceEEcccccccCccccccchhhhccccceeecccccccC--CCcceEEEEeeccccCccccCcchhhhhHhhhh-
Confidence 3 278999999998777663 334578899999999997766 555544443322 22344666664433
Q ss_pred ccHHHHHHHhcCCCeEEEEcCcccccccce---------eEEEEEcCcchHHHHHHHHHhh-CCCCeEEEEECccHHHHH
Q psy1548 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGL---------QQHYVKLKENEKNKKLFELLDV-LEFNQVVIFVKSVTRCIA 369 (448)
Q Consensus 300 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i---------~~~~~~~~~~~k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~ 369 (448)
....++.++....+. ....+. ..+..+ .+++....+.+|. ....++. .+..+++||+.++.+...
T Consensus 1094 ~na~dla~wl~~~~~-~nf~~s--vrpvp~~~~i~gfp~~~~cprm~smnkp--a~qaik~~sp~~p~lifv~srrqtrl 1168 (1230)
T KOG0952|consen 1094 ANANDLADWLNIKDM-YNFRPS--VRPVPLEVHIDGFPGQHYCPRMMSMNKP--AFQAIKTHSPIKPVLIFVSSRRQTRL 1168 (1230)
T ss_pred hccHHHHHHhCCCCc-CCCCcc--cccCCceEeecCCCchhcchhhhhcccH--HHHHHhcCCCCCceEEEeeccccccc
Confidence 334555555443332 111000 011111 2233333333332 2333444 456789999999877655
Q ss_pred HHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 370 LSTLLSE----QNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 370 l~~~L~~----~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
-+..|-. ..-+--+++.+ ..+-+-++..-++..
T Consensus 1169 ta~~li~~~~~~~~p~~fl~~d--e~e~e~~~~~~~d~~ 1205 (1230)
T KOG0952|consen 1169 TALDLIASCATEDNPKQFLNMD--ELELEIIMSKVRDTN 1205 (1230)
T ss_pred chHhHHhhccCCCCchhccCCC--HHHHHHHHHHhcccc
Confidence 5544432 22233344333 555555665555543
No 160
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=98.53 E-value=5.7e-08 Score=103.09 Aligned_cols=134 Identities=29% Similarity=0.385 Sum_probs=86.6
Q ss_pred cccccCCCcee--eeecCceeEEeecCCCccccccccC-CCccccccccccccccchhhhhhhhccCceeeeccCCcccC
Q psy1548 9 EKLSCGSGNVF--LFFRAFIRFSSSFPHSKMADNDDLL-DYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDF 85 (448)
Q Consensus 9 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (448)
+.|.++.+.+| +|.|+|+.|.+....++.....+.+ .........+.......+.........+.....+|.+...-
T Consensus 182 ~~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~l~~~l~~~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~ 261 (591)
T TIGR01389 182 ELLRLADANEFITSFDRPNLRFSVVKKNNKQKFLLDYLKKHRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNK 261 (591)
T ss_pred HHcCCCCCCeEecCCCCCCcEEEEEeCCCHHHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHH
Confidence 35666667666 8999999998876554422221221 11234455666655555544444444444444444433321
Q ss_pred CCCHHHHHHH-hhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 86 LLKPEILRAI-VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 86 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
. ...+++.+ ....+|+|||++++||||++++++|+|+..|..++.|.|++|||||..
T Consensus 262 ~-R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 262 V-RAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG 319 (591)
T ss_pred H-HHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCC
Confidence 1 12222222 234589999999999999999999999999999999999999999943
No 161
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=98.51 E-value=7.3e-08 Score=102.23 Aligned_cols=142 Identities=22% Similarity=0.321 Sum_probs=91.9
Q ss_pred cccccCCCcee--eeecCceeEEeecCCCccccccccCCC----ccccccccccccccchhhhhhhhccCceeeeccCCc
Q psy1548 9 EKLSCGSGNVF--LFFRAFIRFSSSFPHSKMADNDDLLDY----EDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82 (448)
Q Consensus 9 ~~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (448)
+.+.+..+.++ +|.|+|+.|.+...... .+.+..+ .......+.......+.........+..+...+.+.
T Consensus 194 ~~l~l~~~~~~~~~~~r~nl~~~v~~~~~~---~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l 270 (607)
T PRK11057 194 RLLGLNDPLIQISSFDRPNIRYTLVEKFKP---LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGL 270 (607)
T ss_pred HHhCCCCeEEEECCCCCCcceeeeeeccch---HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCC
Confidence 45566666666 89999999876543322 2222222 223445666555545554545545555555555544
Q ss_pred ccCCCCHHHHHHH-hhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 83 RDFLLKPEILRAI-VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 83 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
..-.. ..+++.+ ....+|+|||++++||||+++++.|+||+.|..++.|.|++|||||.. ..|..+++..|
T Consensus 271 ~~~~R-~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G---~~~~~ill~~~ 342 (607)
T PRK11057 271 DNDVR-ADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG---LPAEAMLFYDP 342 (607)
T ss_pred CHHHH-HHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC---CCceEEEEeCH
Confidence 33221 2233333 233489999999999999999999999999999999999999999944 23455555554
No 162
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.47 E-value=8.3e-07 Score=95.43 Aligned_cols=47 Identities=23% Similarity=0.327 Sum_probs=39.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
++.++|.||||+|||++|++|++...... +.+++|-++|+.|-+|+.
T Consensus 49 ~~~lviEAgTGtGKTlaYLlPai~~A~~~--~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 49 GRILVIEAGTGVGKTLSYLLAGIPIARAE--KKKLVISTATVALQEQLV 95 (697)
T ss_pred cceEEEECCCCcchhHHHHHHHHHHHHHc--CCeEEEEcCCHHHHHHHH
Confidence 36789999999999999999998754433 347999999999998875
No 163
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.45 E-value=1.4e-07 Score=97.26 Aligned_cols=131 Identities=20% Similarity=0.293 Sum_probs=85.7
Q ss_pred ccccCCCcee--eeecCceeEEeecCCCccccccccCC-----CccccccccccccccchhhhhhhhccCceeeeccCCc
Q psy1548 10 KLSCGSGNVF--LFFRAFIRFSSSFPHSKMADNDDLLD-----YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGF 82 (448)
Q Consensus 10 ~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (448)
.+.+..+.++ +|.|+|+.|.+.....+. .+++.+ ........+.......+.........+..+...+.+.
T Consensus 183 ~l~l~~~~~~~~s~~r~nl~~~v~~~~~~~--~~~l~~~l~~~~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l 260 (470)
T TIGR00614 183 QLNLKNPQIFCTSFDRPNLYYEVRRKTPKI--LEDLLRFIRKEFKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGL 260 (470)
T ss_pred HcCCCCCcEEeCCCCCCCcEEEEEeCCccH--HHHHHHHHHHhcCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCC
Confidence 4556666666 899999999876544221 112221 1222335666555555555545544455455555544
Q ss_pred ccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 83 RDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..-....-+..+.....+|+|||++++||||+++++.|+||..|..+..|.|++|||||.
T Consensus 261 ~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~ 320 (470)
T TIGR00614 261 EISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRD 320 (470)
T ss_pred CHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCC
Confidence 332222222233334458999999999999999999999999999999999999999993
No 164
>COG4889 Predicted helicase [General function prediction only]
Probab=98.40 E-value=3.2e-07 Score=95.52 Aligned_cols=136 Identities=15% Similarity=0.141 Sum_probs=89.0
Q ss_pred ccCCCCchhhhhhhccccccceeeeeC----cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLG----MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g----~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
...|...++||++ ++..+..| ...=+.+.+|+|||+..+ -+...+.. .++|+++|+.+|..|..+
T Consensus 156 l~~~kk~R~hQq~------Aid~a~~~F~~n~RGkLIMAcGTGKTfTsL-kisEala~----~~iL~LvPSIsLLsQTlr 224 (1518)
T COG4889 156 LKKPKKPRPHQQT------AIDAAKEGFSDNDRGKLIMACGTGKTFTSL-KISEALAA----ARILFLVPSISLLSQTLR 224 (1518)
T ss_pred cCCCCCCChhHHH------HHHHHHhhcccccCCcEEEecCCCccchHH-HHHHHHhh----hheEeecchHHHHHHHHH
Confidence 4466777889999 88777765 223344668999998854 33343332 589999999999999766
Q ss_pred HHHHhhccCCCceEEEEEcCcccHHh-----------------------HHH-HhcCCCcEEEEcHHHHHHHHHCCCCcC
Q psy1548 199 EYERFSKYMSNIKVGVFFGGLPIQKD-----------------------EEY-LKTHNPQIVVGTPGRILALVRNKKLNL 254 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g~~~~~~~-----------------------~~~-l~~~~~~IlV~Tp~~l~~~l~~~~~~~ 254 (448)
.+..-.. + +++...++++...... ... -+...--|+++|.+.+...-......+
T Consensus 225 ew~~~~~-l-~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 225 EWTAQKE-L-DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHhhccC-c-cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 6554322 2 4555555554332111 000 111234689999999877665555567
Q ss_pred CCeeEEEecchhHHHhh
Q psy1548 255 SLLKHFILDECDKMLEQ 271 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~ 271 (448)
..++++|.||||+-...
T Consensus 303 ~~fDliicDEAHRTtGa 319 (1518)
T COG4889 303 DEFDLIICDEAHRTTGA 319 (1518)
T ss_pred CCccEEEecchhccccc
Confidence 88999999999986543
No 165
>KOG0352|consensus
Probab=98.36 E-value=6.3e-08 Score=93.40 Aligned_cols=133 Identities=17% Similarity=0.170 Sum_probs=98.3
Q ss_pred ccccCC-Ccee--eeecCceeEEeecCCCccccccccCCC-----------------ccccccccccccccchhhhhhhh
Q psy1548 10 KLSCGS-GNVF--LFFRAFIRFSSSFPHSKMADNDDLLDY-----------------EDEENTEQIVADGAGDALAKQKE 69 (448)
Q Consensus 10 ~~~~~~-~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~ 69 (448)
.|.+.. .++| -=+|.||.|++.+.....++...|-|+ -..-.++|.+++.+.+..+-...
T Consensus 197 qL~L~~PVAiFkTP~FR~NLFYD~~~K~~I~D~~~~LaDF~~~~LG~~~~~~~~~K~~~GCGIVYCRTR~~cEq~AI~l~ 276 (641)
T KOG0352|consen 197 QLKLRNPVAIFKTPTFRDNLFYDNHMKSFITDCLTVLADFSSSNLGKHEKASQNKKTFTGCGIVYCRTRNECEQVAIMLE 276 (641)
T ss_pred HHhhcCcHHhccCcchhhhhhHHHHHHHHhhhHhHhHHHHHHHhcCChhhhhcCCCCcCcceEEEeccHHHHHHHHHHhh
Confidence 344533 3666 446899999988877654443333222 12345778877776665554444
Q ss_pred ccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..|...-.++.|++.-....-+-.|+.....|.++|+.||||.|+++||+|+||+.|..+--|.|+-|||||.
T Consensus 277 ~~Gi~A~AYHAGLK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESGRAGRD 349 (641)
T KOG0352|consen 277 IAGIPAMAYHAGLKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESGRAGRD 349 (641)
T ss_pred hcCcchHHHhcccccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhccccccC
Confidence 5566566677888877776777777888889999999999999999999999999999999999999999983
No 166
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.32 E-value=2.9e-06 Score=91.83 Aligned_cols=146 Identities=16% Similarity=0.181 Sum_probs=87.1
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH------HhhccCCC--ceEEEEEcCc-
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE------RFSKYMSN--IKVGVFFGGL- 219 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~------~~~~~~~~--~~v~~~~g~~- 219 (448)
..++.+.++||+|||.+|+-.++..... -+..+.||+||+.++...+...+. .|...+.+ +....+.++.
T Consensus 59 ~~n~~~~M~TGtGKT~~~~~~i~~l~~~-~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~ 137 (986)
T PRK15483 59 KANIDIKMETGTGKTYVYTRLMYELHQK-YGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDK 137 (986)
T ss_pred cceEEEEeCCCCCHHHHHHHHHHHHHHH-cCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCcc
Confidence 4689999999999999998877765433 234589999999998877765544 12211212 3333333332
Q ss_pred ------ccHHhHHHHhcC------CCcEEEEcHHHHHHHHH-CC---------C-CcCCCe----eEEEecchhHHHhhh
Q psy1548 220 ------PIQKDEEYLKTH------NPQIVVGTPGRILALVR-NK---------K-LNLSLL----KHFILDECDKMLEQL 272 (448)
Q Consensus 220 ------~~~~~~~~l~~~------~~~IlV~Tp~~l~~~l~-~~---------~-~~~~~i----~~lViDEah~l~~~~ 272 (448)
........+... ..+|+|.|.+.+..-.. .. . ..+..+ -.+|+||+|++...
T Consensus 138 ~k~gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~PivIiDEPh~~~~~- 216 (986)
T PRK15483 138 KKSGRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRPVVIIDEPHRFPRD- 216 (986)
T ss_pred cccccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCCEEEEECCCCCCcc-
Confidence 112333333221 37899999998855211 10 0 111111 26999999988542
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
...+..+ ..+.+.+ ++.+|||.+.
T Consensus 217 --~k~~~~i-~~lnpl~-~lrysAT~~~ 240 (986)
T PRK15483 217 --NKFYQAI-EALKPQM-IIRFGATFPD 240 (986)
T ss_pred --hHHHHHH-HhcCccc-EEEEeeecCC
Confidence 1233444 3343333 5679999986
No 167
>KOG2340|consensus
Probab=98.31 E-value=5.9e-06 Score=82.09 Aligned_cols=294 Identities=15% Similarity=0.155 Sum_probs=174.5
Q ss_pred cceeeeeCcceeeeccC-CChh--HHHHHHHHHHhhhc----------------------------cCCCeEEEEeeccH
Q psy1548 142 FGTKAVLGMDILCQAKS-GMGK--TAVFVLATLQQLET----------------------------TDSNVYVLVMCHTR 190 (448)
Q Consensus 142 ~~~~~~~g~~vli~apT-GsGK--T~~~~l~~l~~l~~----------------------------~~~~~~~lil~Pt~ 190 (448)
.+..+.+.+|++.--.| +.|+ +-.|++-+++++.. +-..+++|||||+|
T Consensus 224 L~~~m~~YrDl~y~~~s~kn~~e~R~lYclH~lNHi~K~r~~IL~Nn~r~~Sqk~g~~~~~~frDQG~tRpkVLivvpfR 303 (698)
T KOG2340|consen 224 LFKIMFNYRDLLYPTRSQKNGEEYRSLYCLHALNHILKTRDLILGNNRRLASQKEGENPDESFRDQGFTRPKVLIVVPFR 303 (698)
T ss_pred HHHHHHhhhhhccccccccccchhhhhHHHHHHHHHHHHHHHHhcchHhhhhhhcCCCCchhhhhcCCCCceEEEEecch
Confidence 55556667887754322 3344 45678888877621 01247999999999
Q ss_pred HHHHHHHHHHHHhhccCCCce--------EEEEEcC----------------------cccH--------HhHHHHh--c
Q psy1548 191 ELAFQISKEYERFSKYMSNIK--------VGVFFGG----------------------LPIQ--------KDEEYLK--T 230 (448)
Q Consensus 191 ~L~~q~~~~~~~~~~~~~~~~--------v~~~~g~----------------------~~~~--------~~~~~l~--~ 230 (448)
+-|..+.+.+..+......-+ ..--+++ ++.. .....+. -
T Consensus 304 e~A~riVn~lis~l~G~~q~k~~V~Nk~RF~~eys~~te~~~~~~~kP~D~~~lf~GNtDD~FriGl~ftkKtikLys~f 383 (698)
T KOG2340|consen 304 ESAYRIVNLLISLLSGDDQGKSEVWNKKRFEGEYSGPTELPPPRAKKPEDFEELFSGNTDDAFRIGLAFTKKTIKLYSKF 383 (698)
T ss_pred HHHHHHHHHHHHHhcCccccchhhhhhhhhchhcCCCcccCCCCCCCchhHHHHhcCCCcchhhhhHHHHHHHHHHHhhh
Confidence 999999988888733221101 1111121 1100 0000110 1
Q ss_pred CCCcEEEEcHHHHHHHHHCC------CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC---CC-------------
Q psy1548 231 HNPQIVVGTPGRILALVRNK------KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP---HT------------- 288 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~------~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~---~~------------- 288 (448)
...||+||+|--|.-++.+. .-.+++|.++|||-||.|+. ..+..+..++..+. ..
T Consensus 384 y~SDIlVaSPLGLRmil~n~gdkkrd~dfLSSIEl~iIDQa~~~l~--QNwEhl~~ifdHLn~~P~k~h~~DfSRVR~wy 461 (698)
T KOG2340|consen 384 YKSDILVASPLGLRMILGNTGDKKRDFDFLSSIELLIIDQADIMLM--QNWEHLLHIFDHLNLQPSKQHDVDFSRVRMWY 461 (698)
T ss_pred cccCeEEecchhhhhhhcCCCcccccchhhhhhhhhhhhhHHHHHH--hhHHHHHHHHHHhhcCcccccCCChhheehhe
Confidence 24689999998877666521 12368899999999998877 46777787877653 21
Q ss_pred --------CeEEEEeccCCccHHHHHHHhcCCCeE-EEEcCc--c---cccccceeEEEEE--cC-----cchHHHHHHH
Q psy1548 289 --------KQVMMFSATLSKEIRPVCKKFMHDPME-VYVDDE--A---KLTLHGLQQHYVK--LK-----ENEKNKKLFE 347 (448)
Q Consensus 289 --------~q~i~~SAT~~~~~~~~~~~~l~~~~~-i~~~~~--~---~~~~~~i~~~~~~--~~-----~~~k~~~L~~ 347 (448)
+|+++||+--.+....+...++.+-.- +..... . ......+.|.+.. ++ .+.++.....
T Consensus 462 L~~qsr~~rQtl~Fs~y~~~~~nS~fn~~c~N~~Gkv~~~~~~~~gsi~~v~~~l~Qvf~ri~~~si~~~~D~RFkyFv~ 541 (698)
T KOG2340|consen 462 LDGQSRYFRQTLLFSRYSHPLFNSLFNQYCQNMAGKVKARNLQSGGSISNVGIPLCQVFQRIEVKSIIETPDARFKYFVD 541 (698)
T ss_pred eccHHHHHHHHHHHHhhccHHHHHHHHHhhhhhcceeeeccccCCCchhhccchhhhhhhheeccCcccCchHHHHHHHH
Confidence 277888887777666666665543211 111100 0 0111112222211 21 2334444433
Q ss_pred HHh-hC---CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHH
Q psy1548 348 LLD-VL---EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNN 423 (448)
Q Consensus 348 ll~-~~---~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~ 423 (448)
-+- .. ...-++||.++--.--++.+++++.++....+|.-.++..-.++-+-|..|. ..++++|.....-.-..
T Consensus 542 ~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qgr--~~vlLyTER~hffrR~~ 619 (698)
T KOG2340|consen 542 KIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQGR--KSVLLYTERAHFFRRYH 619 (698)
T ss_pred hhchhhcccccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhcC--ceEEEEehhhhhhhhhe
Confidence 321 11 1234799999999999999999999999888888888888888888999877 47777776532222223
Q ss_pred HHHHhcCCCCCCCccc
Q psy1548 424 VQDRFDVSISELPDEI 439 (448)
Q Consensus 424 i~~~~~~~~~~~p~~~ 439 (448)
|...-++.++++|...
T Consensus 620 ikGVk~vVfYqpP~~P 635 (698)
T KOG2340|consen 620 IKGVKNVVFYQPPNNP 635 (698)
T ss_pred ecceeeEEEecCCCCc
Confidence 4444445556666553
No 168
>KOG0391|consensus
Probab=98.25 E-value=6e-06 Score=88.51 Aligned_cols=152 Identities=13% Similarity=0.191 Sum_probs=99.7
Q ss_pred chhhhhhhccccccceeeee----CcceeeeccCCChhHHHHHHHHHHhhhc--cCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 129 SDTYLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~----g~~vli~apTGsGKT~~~~l~~l~~l~~--~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
+++||.. -+.++.. .-|.|+....|.|||.. .|.+|.++.- +.-| --|||+||..+.++ .-.+++
T Consensus 616 LReYQki------GLdWLatLYeknlNGILADEmGLGKTIQ-tISllAhLACeegnWG-PHLIVVpTsviLnW-EMElKR 686 (1958)
T KOG0391|consen 616 LREYQKI------GLDWLATLYEKNLNGILADEMGLGKTIQ-TISLLAHLACEEGNWG-PHLIVVPTSVILNW-EMELKR 686 (1958)
T ss_pred HHHHHHh------hHHHHHHHHHhcccceehhhhcccchhH-HHHHHHHHHhcccCCC-CceEEeechhhhhh-hHHHhh
Confidence 4899998 5555432 45889999999999966 3555555532 2334 36888899876654 557888
Q ss_pred hhccCCCceEEEEEcCcccHHhHH--HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEE--YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~--~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~ 280 (448)
|+ |++++..++|.....+... ..+.+..||.|++...+.+-+.. +.-++.+|+|+||||.+-++ -...++.
T Consensus 687 wc---PglKILTYyGs~kErkeKRqgW~kPnaFHVCItSYklv~qd~~A--FkrkrWqyLvLDEaqnIKnf--ksqrWQA 759 (1958)
T KOG0391|consen 687 WC---PGLKILTYYGSHKERKEKRQGWAKPNAFHVCITSYKLVFQDLTA--FKRKRWQYLVLDEAQNIKNF--KSQRWQA 759 (1958)
T ss_pred hC---CcceEeeecCCHHHHHHHhhcccCCCeeEEeehhhHHHHhHHHH--HHhhccceeehhhhhhhcch--hHHHHHH
Confidence 88 5889999999864322221 12334579999998877665432 23356789999999998664 2344555
Q ss_pred HHHhCCCCCeEEEEeccC
Q psy1548 281 IFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 281 i~~~l~~~~q~i~~SAT~ 298 (448)
++.. ... +.++++.|.
T Consensus 760 llnf-nsq-rRLLLtgTP 775 (1958)
T KOG0391|consen 760 LLNF-NSQ-RRLLLTGTP 775 (1958)
T ss_pred Hhcc-chh-heeeecCCc
Confidence 5543 233 345666663
No 169
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=98.24 E-value=8.4e-06 Score=90.26 Aligned_cols=141 Identities=20% Similarity=0.150 Sum_probs=93.5
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 227 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 227 (448)
.++..+|.--+|||||++....+-..+ .....+.+++|+-.++|-.|+.+.+..+..... ... ...+...-...
T Consensus 272 ~~~~G~IWHtqGSGKTlTm~~~A~~l~-~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~~~~--~~~---~~~s~~~Lk~~ 345 (962)
T COG0610 272 DGKGGYIWHTQGSGKTLTMFKLARLLL-ELPKNPKVLFVVDRKDLDDQTSDEFQSFGKVAF--NDP---KAESTSELKEL 345 (962)
T ss_pred cCCceEEEeecCCchHHHHHHHHHHHH-hccCCCeEEEEechHHHHHHHHHHHHHHHHhhh--hcc---cccCHHHHHHH
Confidence 356799999999999998665544333 336778999999999999999999999875431 111 22333333444
Q ss_pred HhcCCCcEEEEcHHHHHHHHHCC-CCcCCC-eeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 228 LKTHNPQIVVGTPGRILALVRNK-KLNLSL-LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 228 l~~~~~~IlV~Tp~~l~~~l~~~-~~~~~~-i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
+..+.-.|+|+|.+++....... .....+ =-.+|+||||+--.. .....+ -..+ ++...++||.|+-
T Consensus 346 l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~~---~~~~-~~a~~~gFTGTPi 414 (962)
T COG0610 346 LEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKLL---KKAL-KKAIFIGFTGTPI 414 (962)
T ss_pred HhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHHH---HHHh-ccceEEEeeCCcc
Confidence 55444489999999998877654 111222 126899999975332 222222 3333 3377899999963
No 170
>KOG0386|consensus
Probab=98.17 E-value=4.5e-06 Score=88.56 Aligned_cols=65 Identities=18% Similarity=0.158 Sum_probs=54.8
Q ss_pred hHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 340 EKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 340 ~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
-|+..|-.++-++ .+++++.||....-..-+-.+|.-.++....+.|....++|-..++.|....
T Consensus 710 GKfELLDRiLPKLkatgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~Pd 776 (1157)
T KOG0386|consen 710 GKFELLDRILPKLKATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNAPD 776 (1157)
T ss_pred cHHHHHHhhhHHHHhcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcCCC
Confidence 3666666666554 4779999998888888888888888999999999999999999999999887
No 171
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.12 E-value=2.4e-05 Score=72.42 Aligned_cols=66 Identities=20% Similarity=0.246 Sum_probs=48.2
Q ss_pred hhhhhhhccccccceeeeeCcc-eeeeccCCChhHHHHHHHHHHhh------hccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMD-ILCQAKSGMGKTAVFVLATLQQL------ETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~-vli~apTGsGKT~~~~l~~l~~l------~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
...|.+ ++..++.... .+|+||.|+|||.+.. .++..+ .....+.++|+++|+..-+.++.+.+.+
T Consensus 3 n~~Q~~------Ai~~~~~~~~~~~i~GpPGTGKT~~l~-~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 3 NESQRE------AIQSALSSNGITLIQGPPGTGKTTTLA-SIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp -HHHHH------HHHHHCTSSE-EEEE-STTSSHHHHHH-HHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CHHHHH------HHHHHHcCCCCEEEECCCCCChHHHHH-HHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 345888 8888888888 9999999999995433 333333 1234566899999999999998888777
No 172
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.02 E-value=4.7e-05 Score=82.30 Aligned_cols=114 Identities=22% Similarity=0.206 Sum_probs=77.4
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
.--|..+.||-|||+++.+|++-....++ .+-||+..-=||..=.+++..+...+ ++.|+++..............
T Consensus 183 ~G~IAEM~TGEGKTLvAtlp~yLnAL~Gk---gVHvVTVNDYLA~RDaewmgply~fL-GLsvg~i~~~~~~~~~rr~aY 258 (1112)
T PRK12901 183 QGKIAEMATGEGKTLVATLPVYLNALTGN---GVHVVTVNDYLAKRDSEWMGPLYEFH-GLSVDCIDKHQPNSEARRKAY 258 (1112)
T ss_pred CCceeeecCCCCchhHHHHHHHHHHHcCC---CcEEEEechhhhhccHHHHHHHHHHh-CCceeecCCCCCCHHHHHHhC
Confidence 44578899999999999999876655443 35666666678876667777777777 999998866332233322222
Q ss_pred cCCCcEEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHH
Q psy1548 230 THNPQIVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKML 269 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~ 269 (448)
.+||.++|..-+ .++|+.+ ......+.+.|+||+|.++
T Consensus 259 --~~DItYgTn~EfGFDYLRDnm~~~~~~~vqR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 259 --NADITYGTNNEFGFDYLRDNMAHSPEDLVQRKHNYAIVDEVDSVL 303 (1112)
T ss_pred --CCcceecCCCccccccchhccccchHhhhCcCCceeEeechhhhh
Confidence 379999998765 2333321 1223557789999999765
No 173
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.97 E-value=4.1e-05 Score=75.99 Aligned_cols=109 Identities=16% Similarity=0.252 Sum_probs=67.5
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
-++|.|..|||||+.++ -++..+.....+..++++++..+|...+.+.+..-... .
T Consensus 3 v~~I~G~aGTGKTvla~-~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~~-----------~------------ 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLAL-NLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYNP-----------K------------ 58 (352)
T ss_pred EEEEEecCCcCHHHHHH-HHHHHhhccccCCceEEEEecchHHHHHHHHHhhhccc-----------c------------
Confidence 36899999999998754 34444422334568999999999998877766553200 0
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh------hhhHHHHHHHHHh
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ------LEMRRDVQEIFRS 284 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~------~~~~~~~~~i~~~ 284 (448)
.....+..|..+...+..........+++|+||||++... ......+..+++.
T Consensus 59 -~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~~~~~~~~~~~~~~L~~i~~~ 117 (352)
T PF09848_consen 59 -LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRTKGDQYNNFSEPNQLDEIIKR 117 (352)
T ss_pred -hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhhccccccccccHHHHHHHHhc
Confidence 0122333444443333222344577899999999999772 0124566666665
No 174
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=97.95 E-value=0.00019 Score=79.87 Aligned_cols=133 Identities=17% Similarity=0.155 Sum_probs=84.9
Q ss_pred Cchhhhhhhccccccceeee-----eCcceeeeccCCChhHHHHHHHHHHhhhccCC-CeEEEEeeccHHHHHHHHHHHH
Q psy1548 128 DSDTYLHRVARAGRFGTKAV-----LGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~-----~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~-~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
.+++||.. .+..+. .+.+.++....|.|||+..+..+......... .+.++++||+.. +.++.+.+.
T Consensus 338 ~lr~yq~~------g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s~-~~nw~~e~~ 410 (866)
T COG0553 338 ELRPYQLE------GVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPASL-LSNWKREFE 410 (866)
T ss_pred hhHHHHHH------HHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHHH-HHHHHHHHh
Confidence 35888988 554433 26788888999999997765544442222222 357999999974 556666777
Q ss_pred HhhccCCCce-EEEEEcCccc----HHhHHHHhcC----CCcEEEEcHHHHHHHH-HCCCCcCCCeeEEEecchhHHHh
Q psy1548 202 RFSKYMSNIK-VGVFFGGLPI----QKDEEYLKTH----NPQIVVGTPGRILALV-RNKKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 202 ~~~~~~~~~~-v~~~~g~~~~----~~~~~~l~~~----~~~IlV~Tp~~l~~~l-~~~~~~~~~i~~lViDEah~l~~ 270 (448)
++.. .++ +....|.... ......+... ..+++++|.+.+.... ....+.-....++|+||+|.+-+
T Consensus 411 k~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn 486 (866)
T COG0553 411 KFAP---DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKN 486 (866)
T ss_pred hhCc---cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhh
Confidence 7764 445 6666666541 2222222221 1689999999887632 11233345567899999998644
No 175
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.86 E-value=1.7e-05 Score=85.95 Aligned_cols=79 Identities=16% Similarity=0.170 Sum_probs=64.1
Q ss_pred eeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 121 FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 121 ~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
|+|..+.+. |.+.+++ ++..+..|+++++.+|||+|||++.+.|+|......+...+++|.+.|..-..|+.+++
T Consensus 6 FPy~~~y~~---Q~~~m~~--v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~El 80 (705)
T TIGR00604 6 FPYEKIYPE---QRSYMRD--LKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEEL 80 (705)
T ss_pred cCCCCCCHH---HHHHHHH--HHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHH
Confidence 445555555 9886664 55666679999999999999999999999987765554568999999999999999999
Q ss_pred HHhh
Q psy1548 201 ERFS 204 (448)
Q Consensus 201 ~~~~ 204 (448)
+++.
T Consensus 81 k~~~ 84 (705)
T TIGR00604 81 RKLM 84 (705)
T ss_pred Hhhh
Confidence 9854
No 176
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=97.82 E-value=4.6e-05 Score=70.87 Aligned_cols=87 Identities=30% Similarity=0.407 Sum_probs=71.3
Q ss_pred CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCc-ccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCC
Q psy1548 178 DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGL-PIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256 (448)
Q Consensus 178 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~-~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 256 (448)
.+.|.+||||.+---|..+.+.++.|... +..+.-+++.. ...++...+..+..+|.||||+++..++..+.+.+++
T Consensus 124 ~gsP~~lvvs~SalRa~dl~R~l~~~~~k--~~~v~KLFaKH~Kl~eqv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 124 KGSPHVLVVSSSALRAADLIRALRSFKGK--DCKVAKLFAKHIKLEEQVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCCEEEEEcchHHHHHHHHHHHHhhccC--CchHHHHHHhhccHHHHHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 45789999999988888888888887532 34444444443 6678888888878999999999999999999999999
Q ss_pred eeEEEecchh
Q psy1548 257 LKHFILDECD 266 (448)
Q Consensus 257 i~~lViDEah 266 (448)
+++||||--|
T Consensus 202 l~~ivlD~s~ 211 (252)
T PF14617_consen 202 LKRIVLDWSY 211 (252)
T ss_pred CeEEEEcCCc
Confidence 9999999865
No 177
>KOG0333|consensus
Probab=97.81 E-value=1.6e-05 Score=79.01 Aligned_cols=95 Identities=36% Similarity=0.509 Sum_probs=68.6
Q ss_pred cccccccccccccchhhhhhhhccCceeeeccCCcccCCCCHHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCC
Q psy1548 48 DEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMP 126 (448)
Q Consensus 48 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p 126 (448)
+...+......+..+..++..+..+-.+.-.|.+ +...-....+..+.. .+.|+|||++++||||.++|..|+||+++
T Consensus 517 ~ppiIIFvN~kk~~d~lAk~LeK~g~~~~tlHg~-k~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydma 595 (673)
T KOG0333|consen 517 DPPIIIFVNTKKGADALAKILEKAGYKVTTLHGG-KSQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMA 595 (673)
T ss_pred CCCEEEEEechhhHHHHHHHHhhccceEEEeeCC-ccHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchh
Confidence 4444555555566666676666655433333321 222233455666666 67999999999999999999999999999
Q ss_pred CCchhhhhhhccccccc
Q psy1548 127 EDSDTYLHRVARAGRFG 143 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~ 143 (448)
..+++|=+.+||+|||.
T Consensus 596 ksieDYtHRIGRTgRAG 612 (673)
T KOG0333|consen 596 KSIEDYTHRIGRTGRAG 612 (673)
T ss_pred hhHHHHHHHhccccccc
Confidence 99999999999999943
No 178
>KOG0388|consensus
Probab=97.73 E-value=0.00014 Score=74.75 Aligned_cols=151 Identities=17% Similarity=0.201 Sum_probs=96.2
Q ss_pred chhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhccC-CCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 129 SDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
+..||.. .+.++. .|-|.|+....|.|||... +.++.++.... --+--|||+|...|-+. .+.+.+
T Consensus 568 LKEYQlk------GLnWLvnlYdqGiNGILADeMGLGKTVQs-isvlAhLaE~~nIwGPFLVVtpaStL~NW-aqEisr- 638 (1185)
T KOG0388|consen 568 LKEYQLK------GLNWLVNLYDQGINGILADEMGLGKTVQS-ISVLAHLAETHNIWGPFLVVTPASTLHNW-AQEISR- 638 (1185)
T ss_pred hHHHhhc------cHHHHHHHHHccccceehhhhccchhHHH-HHHHHHHHHhccCCCceEEeehHHHHhHH-HHHHHH-
Confidence 4778888 555544 4889999999999999775 45555553332 12247889998877544 334444
Q ss_pred hccCCCceEEEEEcCcccHHhHHHH--------hcCCCcEEEEcHHHHHH---HHHCCCCcCCCeeEEEecchhHHHhhh
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYL--------KTHNPQIVVGTPGRILA---LVRNKKLNLSLLKHFILDECDKMLEQL 272 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l--------~~~~~~IlV~Tp~~l~~---~l~~~~~~~~~i~~lViDEah~l~~~~ 272 (448)
++|.+++..++|+.........+ .+.+.||+|+|.+.+.. ++++ -...+.|+|||+.+-+
T Consensus 639 --FlP~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtDeky~qk-----vKWQYMILDEAQAIKS-- 709 (1185)
T KOG0388|consen 639 --FLPSFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTDEKYLQK-----VKWQYMILDEAQAIKS-- 709 (1185)
T ss_pred --hCccceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeechHHHHHh-----hhhhheehhHHHHhhh--
Confidence 45789999999997654433331 23357999998876532 2221 2235799999998866
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
.....+..++...- +-.++++.|.-
T Consensus 710 SsS~RWKtLLsF~c--RNRLLLTGTPI 734 (1185)
T KOG0388|consen 710 SSSSRWKTLLSFKC--RNRLLLTGTPI 734 (1185)
T ss_pred hhhhHHHHHhhhhc--cceeeecCCcc
Confidence 34445555554321 22467777753
No 179
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.67 E-value=0.00063 Score=72.60 Aligned_cols=114 Identities=21% Similarity=0.288 Sum_probs=82.0
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
...-+.-..||-|||+++.+|+.-....++ .+.+++..-=||.--..++..+...+ ++.+++...+.+.......+
T Consensus 93 h~g~iaEM~TGEGKTL~atlp~ylnaL~gk---gVhvVTvNdYLA~RDae~m~~l~~~L-GlsvG~~~~~m~~~ek~~aY 168 (822)
T COG0653 93 HLGDIAEMRTGEGKTLVATLPAYLNALAGK---GVHVVTVNDYLARRDAEWMGPLYEFL-GLSVGVILAGMSPEEKRAAY 168 (822)
T ss_pred cCCceeeeecCCchHHHHHHHHHHHhcCCC---CcEEeeehHHhhhhCHHHHHHHHHHc-CCceeeccCCCChHHHHHHH
Confidence 345577889999999999999865444433 46777777778887788888888888 99999999988766555554
Q ss_pred hcCCCcEEEEcHHHH-HHHHHC------CCCcCCCeeEEEecchhHHH
Q psy1548 229 KTHNPQIVVGTPGRI-LALVRN------KKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l-~~~l~~------~~~~~~~i~~lViDEah~l~ 269 (448)
.+||.++|-..+ .+.++. .......+.+.|+||+|.++
T Consensus 169 ---~~DItY~TnnElGFDYLRDNm~~~~ee~vqr~~~faIvDEvDSIL 213 (822)
T COG0653 169 ---ACDITYGTNNELGFDYLRDNMVTSQEEKVQRGLNFAIVDEVDSIL 213 (822)
T ss_pred ---hcCceeccccccCcchhhhhhhccHHHhhhccCCeEEEcchhhee
Confidence 379999998776 222221 11223457788999999664
No 180
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.62 E-value=0.00012 Score=66.23 Aligned_cols=139 Identities=13% Similarity=0.152 Sum_probs=68.7
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
..|.. ++..++...-+++.||.|+|||+.++..+++.+..+. ..+++++-|..+.... + +++|+-
T Consensus 7 ~~Q~~------~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v~~g~-~~kiii~Rp~v~~~~~----l----GflpG~ 71 (205)
T PF02562_consen 7 EEQKF------ALDALLNNDLVIVNGPAGTGKTFLALAAALELVKEGE-YDKIIITRPPVEAGED----L----GFLPGD 71 (205)
T ss_dssp HHHHH------HHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHHHTTS--SEEEEEE-S--TT------------SS---
T ss_pred HHHHH------HHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHHHhCC-CcEEEEEecCCCCccc----c----ccCCCC
Confidence 34888 7778887788999999999999999999988887633 3477888787753111 1 111110
Q ss_pred ---eEEEEEc-------CcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHH
Q psy1548 211 ---KVGVFFG-------GLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280 (448)
Q Consensus 211 ---~v~~~~g-------~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~ 280 (448)
+...+.. ..-.......+... ..|-+..+..+ +-. .+.+ .++|+|||+.+. ..++..
T Consensus 72 ~~eK~~p~~~p~~d~l~~~~~~~~~~~~~~~-~~Ie~~~~~~i----RGr--t~~~-~~iIvDEaQN~t-----~~~~k~ 138 (205)
T PF02562_consen 72 LEEKMEPYLRPIYDALEELFGKEKLEELIQN-GKIEIEPLAFI----RGR--TFDN-AFIIVDEAQNLT-----PEELKM 138 (205)
T ss_dssp ------TTTHHHHHHHTTTS-TTCHHHHHHT-TSEEEEEGGGG----TT----B-S-EEEEE-SGGG-------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhChHhHHHHhhc-CeEEEEehhhh----cCc--cccc-eEEEEecccCCC-----HHHHHH
Confidence 0000000 00000111111111 23444443321 111 2222 689999999653 456778
Q ss_pred HHHhCCCCCeEEEEecc
Q psy1548 281 IFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 281 i~~~l~~~~q~i~~SAT 297 (448)
++.+...+++++++.-.
T Consensus 139 ilTR~g~~skii~~GD~ 155 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDP 155 (205)
T ss_dssp HHTTB-TT-EEEEEE--
T ss_pred HHcccCCCcEEEEecCc
Confidence 88888888888887543
No 181
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.61 E-value=0.00025 Score=67.22 Aligned_cols=146 Identities=17% Similarity=0.169 Sum_probs=90.8
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
..-.++--.||.||--...--+++....+ ..+.|+++.+..|..+..+.++.++.. .+.+..+..-.. . ....+
T Consensus 62 R~Gf~lGDGtGvGKGR~iAgiI~~n~l~G--r~r~vwvS~s~dL~~Da~RDl~DIG~~--~i~v~~l~~~~~-~-~~~~~ 135 (303)
T PF13872_consen 62 RAGFFLGDGTGVGKGRQIAGIILENWLRG--RKRAVWVSVSNDLKYDAERDLRDIGAD--NIPVHPLNKFKY-G-DIIRL 135 (303)
T ss_pred CcEEEeccCCCcCccchhHHHHHHHHHcC--CCceEEEECChhhhhHHHHHHHHhCCC--cccceechhhcc-C-cCCCC
Confidence 34567778899999876655566665543 337999999999999999999988754 333333322110 0 00112
Q ss_pred hcCCCcEEEEcHHHHHHHHHCC---CCcC---------CCeeEEEecchhHHHhhh-------hhHHHHHHHHHhCCCCC
Q psy1548 229 KTHNPQIVVGTPGRILALVRNK---KLNL---------SLLKHFILDECDKMLEQL-------EMRRDVQEIFRSSPHTK 289 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~---~~~~---------~~i~~lViDEah~l~~~~-------~~~~~~~~i~~~l~~~~ 289 (448)
.-.|+++|...|..--..+ ...+ ..=.+||+||||.+.+.. .....+..+-+.+|. .
T Consensus 136 ---~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~~sk~g~avl~LQ~~LP~-A 211 (303)
T PF13872_consen 136 ---KEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKKPSKTGIAVLELQNRLPN-A 211 (303)
T ss_pred ---CCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCccccHHHHHHHHHHHhCCC-C
Confidence 2359999998876654211 1100 112379999999886541 122445556666754 4
Q ss_pred eEEEEeccCCccHHH
Q psy1548 290 QVMMFSATLSKEIRP 304 (448)
Q Consensus 290 q~i~~SAT~~~~~~~ 304 (448)
+++.+|||--.+.+.
T Consensus 212 RvvY~SATgasep~N 226 (303)
T PF13872_consen 212 RVVYASATGASEPRN 226 (303)
T ss_pred cEEEecccccCCCce
Confidence 599999997655433
No 182
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=97.59 E-value=0.0002 Score=75.38 Aligned_cols=147 Identities=13% Similarity=0.224 Sum_probs=79.1
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH----h-hccCCCceEEEEEcCcccHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER----F-SKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~----~-~~~~~~~~v~~~~g~~~~~~~ 224 (448)
-++=|.+.||+|||.||+-.+...- ..-+-.+-|||+||.+.-.-+....+. | .+.+.+.+...+.-+......
T Consensus 75 lNiDI~METGTGKTy~YlrtmfeLh-k~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~ 153 (985)
T COG3587 75 LNIDILMETGTGKTYTYLRTMFELH-KKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKF 153 (985)
T ss_pred ceeeEEEecCCCceeeHHHHHHHHH-HHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHH
Confidence 4778899999999999987665432 222335789999999976543333222 2 222223344333332211111
Q ss_pred HHHHhcCCCcEEEEcHHHHHH------HHHCCCCcC--------------CCe-eEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 225 EEYLKTHNPQIVVGTPGRILA------LVRNKKLNL--------------SLL-KHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~------~l~~~~~~~--------------~~i-~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
..-.++.|.+++.|...+.. ++.+..... ..+ -.+|+||-|+|.........+..+
T Consensus 154 -~~~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rPIvIvDEPh~f~~~~k~~~~i~~l-- 230 (985)
T COG3587 154 -KFKSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRPIVIVDEPHRFLGDDKTYGAIKQL-- 230 (985)
T ss_pred -hhccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCCEEEecChhhcccchHHHHHHHhh--
Confidence 11123347777777654421 222211111 111 269999999997731233333322
Q ss_pred hCCCCCeEEEEeccCCccHH
Q psy1548 284 SSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~~~~ 303 (448)
.| .-++=++||+++...
T Consensus 231 -~p--l~ilRfgATfkd~y~ 247 (985)
T COG3587 231 -NP--LLILRFGATFKDEYN 247 (985)
T ss_pred -Cc--eEEEEecccchhhhc
Confidence 21 236779999987643
No 183
>PF13245 AAA_19: Part of AAA domain
Probab=97.55 E-value=0.00016 Score=54.57 Aligned_cols=52 Identities=27% Similarity=0.367 Sum_probs=37.1
Q ss_pred Ccc-eeeeccCCChhHHHHHHHHHHhhh-ccCCCeEEEEeeccHHHHHHHHHHH
Q psy1548 149 GMD-ILCQAKSGMGKTAVFVLATLQQLE-TTDSNVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 149 g~~-vli~apTGsGKT~~~~l~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~ 200 (448)
+.+ ++|.+|.|||||...+-.+...+. ....+.++++++|++..+..+.+.+
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 444 556999999999665544444442 1222568999999999999987777
No 184
>PRK10536 hypothetical protein; Provisional
Probab=97.53 E-value=0.00058 Score=63.60 Aligned_cols=145 Identities=11% Similarity=0.086 Sum_probs=78.2
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHH---------
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA--------- 193 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~--------- 193 (448)
+....+....|.. .+..+..+..+++.||+|+|||+.....+++.+... .-.++++.-|+.+..
T Consensus 54 ~~~i~p~n~~Q~~------~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~~~-~~~kIiI~RP~v~~ge~LGfLPG~ 126 (262)
T PRK10536 54 TSPILARNEAQAH------YLKAIESKQLIFATGEAGCGKTWISAAKAAEALIHK-DVDRIIVTRPVLQADEDLGFLPGD 126 (262)
T ss_pred CccccCCCHHHHH------HHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHhcC-CeeEEEEeCCCCCchhhhCcCCCC
Confidence 3344455555888 777777788899999999999988777777655432 233455555665421
Q ss_pred --HHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH-hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHh
Q psy1548 194 --FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL-KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 194 --~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 270 (448)
+.+.-.+..+...+ .. +.|. .....+ ....-.|-|... .+++...+ . -.++|+|||+.+.
T Consensus 127 ~~eK~~p~~~pi~D~L-~~----~~~~----~~~~~~~~~~~~~Iei~~l----~ymRGrtl--~-~~~vIvDEaqn~~- 189 (262)
T PRK10536 127 IAEKFAPYFRPVYDVL-VR----RLGA----SFMQYCLRPEIGKVEIAPF----AYMRGRTF--E-NAVVILDEAQNVT- 189 (262)
T ss_pred HHHHHHHHHHHHHHHH-HH----HhCh----HHHHHHHHhccCcEEEecH----HHhcCCcc--c-CCEEEEechhcCC-
Confidence 11111111111111 00 0011 111111 111123444432 23333332 2 2689999999652
Q ss_pred hhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 271 QLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 271 ~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+..++..++.+.++|+..
T Consensus 190 ----~~~~k~~ltR~g~~sk~v~~G 210 (262)
T PRK10536 190 ----AAQMKMFLTRLGENVTVIVNG 210 (262)
T ss_pred ----HHHHHHHHhhcCCCCEEEEeC
Confidence 266778888888888887764
No 185
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=97.46 E-value=0.00011 Score=79.22 Aligned_cols=72 Identities=22% Similarity=0.265 Sum_probs=54.6
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
..++.|.+++.+ ....+..|+.+++.||||+|||++|++|++......+ .+++|.++|+.|-.|+.+....+
T Consensus 15 ~~r~~Q~~~~~~--v~~a~~~~~~~~iEapTGtGKTl~yL~~al~~~~~~~--~~viist~t~~lq~q~~~~~~~~ 86 (654)
T COG1199 15 EPRPEQREMAEA--VAEALKGGEGLLIEAPTGTGKTLAYLLPALAYAREEG--KKVIISTRTKALQEQLLEEDLPI 86 (654)
T ss_pred CCCHHHHHHHHH--HHHHHcCCCcEEEECCCCccHHHHHHHHHHHHHHHcC--CcEEEECCCHHHHHHHHHhhcch
Confidence 334449885553 2234445667999999999999999999998765543 57999999999999988776554
No 186
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.44 E-value=0.00067 Score=61.98 Aligned_cols=110 Identities=20% Similarity=0.193 Sum_probs=65.4
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
|+-|.+++++ .+ .-.+|+|.+.+.-+|.|||.+ ++|++..+..++.. -+.+++| ++|..|..+.+..-.+..-+
T Consensus 25 R~~Q~~ia~~--mi-~~~~~~n~v~QlnMGeGKTsV-I~Pmla~~LAdg~~-LvrviVp-k~Ll~q~~~~L~~~lg~l~~ 98 (229)
T PF12340_consen 25 RPVQVEIARE--MI-SPPSGKNSVMQLNMGEGKTSV-IVPMLALALADGSR-LVRVIVP-KALLEQMRQMLRSRLGGLLN 98 (229)
T ss_pred eHHHHHHHHH--Hh-CCCCCCCeEeeecccCCccch-HHHHHHHHHcCCCc-EEEEEcC-HHHHHHHHHHHHHHHHHHhC
Confidence 4447774442 12 223689999999999999966 68888877765543 4455555 46888888877754332214
Q ss_pred ceEEEE--EcCcccHH-h---HH----HHhcCCCcEEEEcHHHHHHH
Q psy1548 210 IKVGVF--FGGLPIQK-D---EE----YLKTHNPQIVVGTPGRILAL 246 (448)
Q Consensus 210 ~~v~~~--~g~~~~~~-~---~~----~l~~~~~~IlV~Tp~~l~~~ 246 (448)
-++..+ .-..+... . .. ..... -.|+++||+.++++
T Consensus 99 r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~-~gill~~PEhilSf 144 (229)
T PF12340_consen 99 RRIYHLPFSRSTPLTPETLEKIRQLLEECMRS-GGILLATPEHILSF 144 (229)
T ss_pred CeeEEecccCCCCCCHHHHHHHHHHHHHHHHc-CCEEEeChHHHHHH
Confidence 344333 22222111 1 11 11122 46999999998764
No 187
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.40 E-value=0.00084 Score=70.70 Aligned_cols=140 Identities=14% Similarity=0.190 Sum_probs=82.3
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHH--HHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVF--VLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~--~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
+.|+. ++..++..+-.++.|+.|+|||.+. ++..+..........++++.+||-.-+..+.+.+......+
T Consensus 148 ~~Qk~------A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l- 220 (586)
T TIGR01447 148 NWQKV------AVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNL- 220 (586)
T ss_pred HHHHH------HHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccc-
Confidence 45988 8888888899999999999999763 22223222211123579999999987777666555432221
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC------CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN------KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~------~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
... .. .... ..+-..|-.+++..... ..-+...+++||||||-++ +. ..+..++
T Consensus 221 ~~~-----------~~---~~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMv-d~----~l~~~ll 280 (586)
T TIGR01447 221 AAA-----------EA---LIAA-LPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMV-DL----PLMAKLL 280 (586)
T ss_pred ccc-----------hh---hhhc-cccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccC-CH----HHHHHHH
Confidence 100 00 0000 11123343333322110 1112345789999999844 32 3466678
Q ss_pred HhCCCCCeEEEEecc
Q psy1548 283 RSSPHTKQVMMFSAT 297 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT 297 (448)
+.+++..++|++.=.
T Consensus 281 ~al~~~~rlIlvGD~ 295 (586)
T TIGR01447 281 KALPPNTKLILLGDK 295 (586)
T ss_pred HhcCCCCEEEEECCh
Confidence 888888998887654
No 188
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.38 E-value=3.6e-05 Score=58.36 Aligned_cols=73 Identities=22% Similarity=0.246 Sum_probs=52.5
Q ss_pred HHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 372 TLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 372 ~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+.|++.|+++..+||++++++|..++++|++++. .|+++|.....++ ++...-.+-+.+.|.+...+.|+.||
T Consensus 1 ~~L~~~~~~~~~i~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi--d~~~~~~vi~~~~~~~~~~~~Q~~GR 73 (78)
T PF00271_consen 1 KFLEKKGIKVAIIHGDMSQKERQEILKKFNSGEI--RVLIATDILGEGI--DLPDASHVIFYDPPWSPEEYIQRIGR 73 (78)
T ss_dssp HHHHHTTSSEEEESTTSHHHHHHHHHHHHHTTSS--SEEEESCGGTTSS--TSTTESEEEESSSESSHHHHHHHHTT
T ss_pred CChHHCCCcEEEEECCCCHHHHHHHHHHhhccCc--eEEEeeccccccc--cccccccccccccCCCHHHHHHHhhc
Confidence 4688899999999999999999999999999985 6777776533332 23322333444556666667777776
No 189
>KOG0331|consensus
Probab=97.37 E-value=0.00012 Score=74.31 Aligned_cols=43 Identities=44% Similarity=0.915 Sum_probs=41.8
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..|+|||+.++||+|.++|+.|+||++|..+++|=+..||+||
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTGR 434 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTGR 434 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCcccc
Confidence 4899999999999999999999999999999999999999998
No 190
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.37 E-value=0.00037 Score=63.11 Aligned_cols=118 Identities=18% Similarity=0.204 Sum_probs=66.0
Q ss_pred hhhhccccccceeeeeCc--ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 133 LHRVARAGRFGTKAVLGM--DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~--~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
|.+ ++..++... -.+++||.|+|||.+ +-.+...+... +.++++++||...+..+.+.. +.
T Consensus 6 Q~~------a~~~~l~~~~~~~~l~G~aGtGKT~~-l~~~~~~~~~~--g~~v~~~apT~~Aa~~L~~~~--------~~ 68 (196)
T PF13604_consen 6 QRE------AVRAILTSGDRVSVLQGPAGTGKTTL-LKALAEALEAA--GKRVIGLAPTNKAAKELREKT--------GI 68 (196)
T ss_dssp HHH------HHHHHHHCTCSEEEEEESTTSTHHHH-HHHHHHHHHHT--T--EEEEESSHHHHHHHHHHH--------TS
T ss_pred HHH------HHHHHHhcCCeEEEEEECCCCCHHHH-HHHHHHHHHhC--CCeEEEECCcHHHHHHHHHhh--------Cc
Confidence 888 777776543 477889999999975 33444444433 468999999998877754431 11
Q ss_pred eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC----CcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC
Q psy1548 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK----LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP 286 (448)
Q Consensus 211 ~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~----~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~ 286 (448)
.+ .|-.+++....... ..+...+++||||+-.+.. ..+..++...+
T Consensus 69 ~a-------------------------~Ti~~~l~~~~~~~~~~~~~~~~~~vliVDEasmv~~-----~~~~~ll~~~~ 118 (196)
T PF13604_consen 69 EA-------------------------QTIHSFLYRIPNGDDEGRPELPKKDVLIVDEASMVDS-----RQLARLLRLAK 118 (196)
T ss_dssp -E-------------------------EEHHHHTTEECCEECCSSCC-TSTSEEEESSGGG-BH-----HHHHHHHHHS-
T ss_pred ch-------------------------hhHHHHHhcCCcccccccccCCcccEEEEecccccCH-----HHHHHHHHHHH
Confidence 11 12111111111100 0144556899999996533 34566666666
Q ss_pred C-CCeEEEEecc
Q psy1548 287 H-TKQVMMFSAT 297 (448)
Q Consensus 287 ~-~~q~i~~SAT 297 (448)
. ..+++++.=+
T Consensus 119 ~~~~klilvGD~ 130 (196)
T PF13604_consen 119 KSGAKLILVGDP 130 (196)
T ss_dssp T-T-EEEEEE-T
T ss_pred hcCCEEEEECCc
Confidence 5 6777777654
No 191
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.33 E-value=0.0028 Score=67.02 Aligned_cols=139 Identities=14% Similarity=0.160 Sum_probs=82.2
Q ss_pred hhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc--cCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 131 TYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET--TDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~--~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
+.|+. ++...+..+-.+|.|+.|+|||.+. ..++..+.. .....++.+.+||..-|..+.+.+......+
T Consensus 155 d~Qk~------Av~~a~~~~~~vItGgpGTGKTt~v-~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~- 226 (615)
T PRK10875 155 DWQKV------AAAVALTRRISVISGGPGTGKTTTV-AKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQL- 226 (615)
T ss_pred HHHHH------HHHHHhcCCeEEEEeCCCCCHHHHH-HHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhcc-
Confidence 56999 8888888889999999999999663 223322222 1223578889999988877766555433222
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC------CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN------KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~------~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
+. .... ... ...-..|-.+++..... ...+.-..+++|+||+-++ + ...+..++
T Consensus 227 ~~-----------~~~~---~~~-~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIvDEaSMv-d----~~lm~~ll 286 (615)
T PRK10875 227 PL-----------TDEQ---KKR-IPEEASTLHRLLGAQPGSQRLRYHAGNPLHLDVLVVDEASMV-D----LPMMARLI 286 (615)
T ss_pred cc-----------chhh---hhc-CCCchHHHHHHhCcCCCccchhhccccCCCCCeEEEChHhcc-c----HHHHHHHH
Confidence 11 0000 000 01112233333222111 1112344689999999944 4 24566778
Q ss_pred HhCCCCCeEEEEecc
Q psy1548 283 RSSPHTKQVMMFSAT 297 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT 297 (448)
+.+++..++|++.=.
T Consensus 287 ~al~~~~rlIlvGD~ 301 (615)
T PRK10875 287 DALPPHARVIFLGDR 301 (615)
T ss_pred HhcccCCEEEEecch
Confidence 888999999888655
No 192
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=97.32 E-value=0.00016 Score=73.61 Aligned_cols=45 Identities=51% Similarity=0.953 Sum_probs=42.5
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+++++|||+++++.|++|+.|.....|-+.+||+||..
T Consensus 306 ~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~GR~gR~G 350 (423)
T PRK04837 306 LDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRIGRTGRAG 350 (423)
T ss_pred CcEEEEechhhcCCCccccCEEEEeCCCCchhheEeccccccCCC
Confidence 489999999999999999999999999999999999999999943
No 193
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=97.31 E-value=0.00026 Score=53.60 Aligned_cols=76 Identities=25% Similarity=0.295 Sum_probs=54.9
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 369 ~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.++..|++.++.+..+||+++.++|..+++.|+++.. .|.++|.....+. ++...-.+-+...|.+...+.++.||
T Consensus 2 ~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~~~~--~vli~t~~~~~Gi--~~~~~~~vi~~~~~~~~~~~~Q~~gR 77 (82)
T smart00490 2 ELAELLKELGIKVARLHGGLSQEEREEILEKFNNGKI--KVLVATDVAERGL--DLPGVDLVIIYDLPWSPASYIQRIGR 77 (82)
T ss_pred HHHHHHHHCCCeEEEEECCCCHHHHHHHHHHHHcCCC--eEEEECChhhCCc--ChhcCCEEEEeCCCCCHHHHHHhhcc
Confidence 5678888889999999999999999999999999874 6666665322222 34433344445556666677788777
No 194
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.28 E-value=0.0059 Score=60.94 Aligned_cols=132 Identities=12% Similarity=0.177 Sum_probs=73.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
++.+++.||||+|||.+..--+...... ...+.++.+++ +.|.-+.. +++.++..+ ++.+.
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~e---QL~~~a~~l-gvpv~------------ 237 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKK---QIQTYGDIM-GIPVK------------ 237 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHH---HHHHHhhcC-CcceE------------
Confidence 4678999999999997764333222111 11233444443 44444443 355555544 44331
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCC-CeEEEEeccCCc-cHH
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT-KQVMMFSATLSK-EIR 303 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~-~q~i~~SAT~~~-~~~ 303 (448)
.+-++..+...+.. +.+.+++++|++.+..........+..++...... ..++.+|||... .+.
T Consensus 238 ----------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~~~ 303 (388)
T PRK12723 238 ----------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSDVK 303 (388)
T ss_pred ----------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHH
Confidence 11234444444432 35678999999997754312345556666655433 467889999864 355
Q ss_pred HHHHHhc
Q psy1548 304 PVCKKFM 310 (448)
Q Consensus 304 ~~~~~~l 310 (448)
+....|.
T Consensus 304 ~~~~~~~ 310 (388)
T PRK12723 304 EIFHQFS 310 (388)
T ss_pred HHHHHhc
Confidence 5556553
No 195
>KOG1802|consensus
Probab=97.25 E-value=0.00061 Score=69.92 Aligned_cols=83 Identities=18% Similarity=0.060 Sum_probs=61.0
Q ss_pred eEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 119 IVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 119 ~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
.++++...+.- |.. |..+++...=.||++|.|+|||.+..--+++.+.. ....+|+.+|+.--+.|+.+
T Consensus 404 s~~~lpkLN~S---Q~~------AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~--~~~~VLvcApSNiAVDqLae 472 (935)
T KOG1802|consen 404 SVPNLPKLNAS---QSN------AVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ--HAGPVLVCAPSNIAVDQLAE 472 (935)
T ss_pred cCCCchhhchH---HHH------HHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh--cCCceEEEcccchhHHHHHH
Confidence 34444444555 888 77788888888999999999998865555554443 34479999999998899888
Q ss_pred HHHHhhccCCCceEEEEEc
Q psy1548 199 EYERFSKYMSNIKVGVFFG 217 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g 217 (448)
.+.+. ++++..++.
T Consensus 473 KIh~t-----gLKVvRl~a 486 (935)
T KOG1802|consen 473 KIHKT-----GLKVVRLCA 486 (935)
T ss_pred HHHhc-----CceEeeeeh
Confidence 77764 567766654
No 196
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.20 E-value=0.0009 Score=55.96 Aligned_cols=19 Identities=21% Similarity=0.295 Sum_probs=12.9
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
++.++|.||+|+|||.+..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~ 22 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIK 22 (131)
T ss_dssp ---EEEEE-TTSSHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHH
Confidence 4678999999999997643
No 197
>KOG0989|consensus
Probab=97.19 E-value=0.0021 Score=60.60 Aligned_cols=58 Identities=24% Similarity=0.451 Sum_probs=41.5
Q ss_pred CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc---cHHHHHHHhc
Q psy1548 251 KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK---EIRPVCKKFM 310 (448)
Q Consensus 251 ~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~---~~~~~~~~~l 310 (448)
....+.++.||+||||.|.. +-+..+...+...+....+++.+.-+.. .+..-+.+|.
T Consensus 124 ~~~~~~fKiiIlDEcdsmts--daq~aLrr~mE~~s~~trFiLIcnylsrii~pi~SRC~Kfr 184 (346)
T KOG0989|consen 124 GYPCPPFKIIILDECDSMTS--DAQAALRRTMEDFSRTTRFILICNYLSRIIRPLVSRCQKFR 184 (346)
T ss_pred CCCCCcceEEEEechhhhhH--HHHHHHHHHHhccccceEEEEEcCChhhCChHHHhhHHHhc
Confidence 34456678999999999877 5777788888888888888888776543 3333344443
No 198
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=97.17 E-value=0.00035 Score=52.87 Aligned_cols=46 Identities=37% Similarity=0.720 Sum_probs=42.6
Q ss_pred hhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 96 VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 96 ~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
.....|+++|+++++|+|.+.+..|+.+..|.....|.|.+||++|
T Consensus 31 ~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R 76 (78)
T PF00271_consen 31 SGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGR 76 (78)
T ss_dssp TTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSST
T ss_pred ccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCC
Confidence 3356999999999999999999999999999999999999999887
No 199
>KOG1803|consensus
Probab=97.13 E-value=0.00055 Score=69.75 Aligned_cols=68 Identities=16% Similarity=0.123 Sum_probs=49.8
Q ss_pred CCCCchhhhhhhccccccceeeeeCc-ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~-~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
.|..+++-|.. ++..+.+.+ -.+++||.|+|||.+...-+.+.+..+ .++|+.+||..-+..+.+.+.
T Consensus 182 ~~~~ln~SQk~------Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk~~---k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 182 FNKNLNSSQKA------AVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVKQK---KRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CCccccHHHHH------HHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHHcC---CeEEEEcCchHHHHHHHHHhc
Confidence 34455666888 777766664 468899999999988666555555433 489999999998888777543
No 200
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=97.06 E-value=0.00053 Score=71.43 Aligned_cols=56 Identities=45% Similarity=0.784 Sum_probs=47.7
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
..|+|||++++||||++++..|+||+.|...+.|=+.+||+||+. ..|..+.+..|
T Consensus 324 ~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTgRaG---~~G~ai~fv~~ 379 (513)
T COG0513 324 LRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTGRAG---RKGVAISFVTE 379 (513)
T ss_pred CCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccccCC---CCCeEEEEeCc
Confidence 499999999999999999999999999999999999999999955 34444444444
No 201
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=97.03 E-value=0.00042 Score=71.32 Aligned_cols=44 Identities=45% Similarity=0.867 Sum_probs=41.9
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+|+|||+++++|+|+++++.|++|..|.....|-+.+||+||+
T Consensus 296 ~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GRaGR~ 339 (456)
T PRK10590 296 IRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGRTGRA 339 (456)
T ss_pred CcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccccccC
Confidence 47999999999999999999999999999999999999999994
No 202
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=97.03 E-value=0.00052 Score=70.15 Aligned_cols=45 Identities=51% Similarity=0.885 Sum_probs=42.2
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
...|+|||+++++|+|.+++..|++|+.|.....|.+.+||+||.
T Consensus 295 ~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~gR~ 339 (434)
T PRK11192 295 RVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTGRA 339 (434)
T ss_pred CCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccccC
Confidence 348999999999999999999999999999999999999999993
No 203
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=97.01 E-value=0.00043 Score=72.34 Aligned_cols=45 Identities=42% Similarity=0.818 Sum_probs=42.4
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..|+|||++++||+|+++++.|++|+.|..+..|-+.+|||||..
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRaGR~g 463 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRASRMG 463 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhccccccCC
Confidence 389999999999999999999999999999999999999999943
No 204
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.97 E-value=0.017 Score=57.07 Aligned_cols=138 Identities=17% Similarity=0.247 Sum_probs=75.7
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
..++-+.+.||||-|||.+.+--+.......+.....||-+-|--.. ..++++.++..+ ++.+.++...........
T Consensus 201 ~~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIG--A~EQLk~Ya~im-~vp~~vv~~~~el~~ai~ 277 (407)
T COG1419 201 EQKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIG--AVEQLKTYADIM-GVPLEVVYSPKELAEAIE 277 (407)
T ss_pred ccCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhh--HHHHHHHHHHHh-CCceEEecCHHHHHHHHH
Confidence 44788999999999999775432222221222333455555444332 234566776666 666666555554444444
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc-cHHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK-EIRPV 305 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~-~~~~~ 305 (448)
.+.+. -.|+|-|.| +-..+......+..++.......-.+.+|||... ++++.
T Consensus 278 ~l~~~-d~ILVDTaG-------------------------rs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlkei 331 (407)
T COG1419 278 ALRDC-DVILVDTAG-------------------------RSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLKEI 331 (407)
T ss_pred HhhcC-CEEEEeCCC-------------------------CCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHHHH
Confidence 44432 334444443 2111113344555555555444556788888754 46667
Q ss_pred HHHhcCCC
Q psy1548 306 CKKFMHDP 313 (448)
Q Consensus 306 ~~~~l~~~ 313 (448)
+..|-.-|
T Consensus 332 ~~~f~~~~ 339 (407)
T COG1419 332 IKQFSLFP 339 (407)
T ss_pred HHHhccCC
Confidence 77665433
No 205
>KOG0336|consensus
Probab=96.95 E-value=0.0005 Score=66.66 Aligned_cols=43 Identities=51% Similarity=0.958 Sum_probs=41.1
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
+|+|+|++++||+|.+++..|+||++|..++.|-+..||+||+
T Consensus 517 rILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrtGRa 559 (629)
T KOG0336|consen 517 RILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRTGRA 559 (629)
T ss_pred EEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhcccccC
Confidence 8899999999999999999999999999999999999998884
No 206
>PTZ00110 helicase; Provisional
Probab=96.94 E-value=0.00067 Score=71.26 Aligned_cols=64 Identities=31% Similarity=0.616 Sum_probs=50.0
Q ss_pred HHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 91 ILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+++.+.+ ...|+|||+++++|+|+++++.|++|+.|..+.+|-|.+||+||+-. .|..+.+..+
T Consensus 419 il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtGR~G~---~G~ai~~~~~ 483 (545)
T PTZ00110 419 VLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTGRAGA---KGASYTFLTP 483 (545)
T ss_pred HHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCC---CceEEEEECc
Confidence 3444433 34799999999999999999999999999999999999999999532 3444444433
No 207
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.94 E-value=0.0032 Score=68.20 Aligned_cols=124 Identities=15% Similarity=0.126 Sum_probs=73.1
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
+.+-|.+ ++..+..++-+++.|+.|+|||.+. -.++..+....+...+++++||..-+..+.+. .
T Consensus 324 l~~~Q~~------Ai~~~~~~~~~iitGgpGTGKTt~l-~~i~~~~~~~~~~~~v~l~ApTg~AA~~L~e~----~---- 388 (720)
T TIGR01448 324 LSEEQKQ------ALDTAIQHKVVILTGGPGTGKTTIT-RAIIELAEELGGLLPVGLAAPTGRAAKRLGEV----T---- 388 (720)
T ss_pred CCHHHHH------HHHHHHhCCeEEEECCCCCCHHHHH-HHHHHHHHHcCCCceEEEEeCchHHHHHHHHh----c----
Confidence 3444999 7777777888999999999999653 34444443322224688889998766543221 1
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC-----CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN-----KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~-----~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
+... .|..+++..... ..-.....+++|+|||+++-. ..+..+++
T Consensus 389 g~~a-------------------------~Tih~lL~~~~~~~~~~~~~~~~~~~llIvDEaSMvd~-----~~~~~Ll~ 438 (720)
T TIGR01448 389 GLTA-------------------------STIHRLLGYGPDTFRHNHLEDPIDCDLLIVDESSMMDT-----WLALSLLA 438 (720)
T ss_pred CCcc-------------------------ccHHHHhhccCCccchhhhhccccCCEEEEeccccCCH-----HHHHHHHH
Confidence 1110 011111110000 001123567999999996533 23466677
Q ss_pred hCCCCCeEEEEecc
Q psy1548 284 SSPHTKQVMMFSAT 297 (448)
Q Consensus 284 ~l~~~~q~i~~SAT 297 (448)
.++...+++++.-+
T Consensus 439 ~~~~~~rlilvGD~ 452 (720)
T TIGR01448 439 ALPDHARLLLVGDT 452 (720)
T ss_pred hCCCCCEEEEECcc
Confidence 78888888887654
No 208
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=96.91 E-value=0.00073 Score=69.64 Aligned_cols=44 Identities=39% Similarity=0.757 Sum_probs=41.9
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+|+|||+.+++|+|.+++..|++|..|...+.|.+.+||+||+
T Consensus 293 ~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~ 336 (460)
T PRK11776 293 CSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRA 336 (460)
T ss_pred CcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCC
Confidence 48999999999999999999999999999999999999999994
No 209
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.89 E-value=0.012 Score=49.42 Aligned_cols=17 Identities=29% Similarity=0.467 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHH
Q psy1548 149 GMDILCQAKSGMGKTAV 165 (448)
Q Consensus 149 g~~vli~apTGsGKT~~ 165 (448)
++.+++.||+|+|||..
T Consensus 19 ~~~v~i~G~~G~GKT~l 35 (151)
T cd00009 19 PKNLLLYGPPGTGKTTL 35 (151)
T ss_pred CCeEEEECCCCCCHHHH
Confidence 67899999999999964
No 210
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.89 E-value=0.0051 Score=55.61 Aligned_cols=131 Identities=14% Similarity=0.168 Sum_probs=67.2
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
-+++.||||+|||.+..--+...... +.++.+++ ..|.=+.+ +++.++..+ ++.+.......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~---~~~v~lis~D~~R~ga~e---QL~~~a~~l-~vp~~~~~~~~--------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLK---GKKVALISADTYRIGAVE---QLKTYAEIL-GVPFYVARTES--------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHT---T--EEEEEESTSSTHHHH---HHHHHHHHH-TEEEEESSTTS---------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhc---cccceeecCCCCCccHHH---HHHHHHHHh-ccccchhhcch---------
Confidence 36789999999997754333332222 22444444 34544443 455555544 55443322111
Q ss_pred hcCCCcEEEEcHHHH-HHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 229 KTHNPQIVVGTPGRI-LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l-~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
.|..+ .+.+.. ...++.++++||-+-+..........+..++....+..-++.+|||...+......
T Consensus 67 ----------~~~~~~~~~l~~--~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~~~~~~ 134 (196)
T PF00448_consen 67 ----------DPAEIAREALEK--FRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQEDLEQAL 134 (196)
T ss_dssp ----------CHHHHHHHHHHH--HHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHHHHHHH
T ss_pred ----------hhHHHHHHHHHH--HhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHHHHHHH
Confidence 11111 111111 11234566778877544332245566777777766666678899998766444444
Q ss_pred Hh
Q psy1548 308 KF 309 (448)
Q Consensus 308 ~~ 309 (448)
.+
T Consensus 135 ~~ 136 (196)
T PF00448_consen 135 AF 136 (196)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 211
>PRK06526 transposase; Provisional
Probab=96.86 E-value=0.0083 Score=56.54 Aligned_cols=24 Identities=17% Similarity=0.202 Sum_probs=19.1
Q ss_pred eeeeeCcceeeeccCCChhHHHHH
Q psy1548 144 TKAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 144 ~~~~~g~~vli~apTGsGKT~~~~ 167 (448)
..+..+.++++.||+|+|||....
T Consensus 93 ~fi~~~~nlll~Gp~GtGKThLa~ 116 (254)
T PRK06526 93 DFVTGKENVVFLGPPGTGKTHLAI 116 (254)
T ss_pred chhhcCceEEEEeCCCCchHHHHH
Confidence 334467899999999999996654
No 212
>KOG0342|consensus
Probab=96.85 E-value=0.0015 Score=64.86 Aligned_cols=64 Identities=36% Similarity=0.554 Sum_probs=51.2
Q ss_pred HHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
..+.......|+|||+.+.||+|+|+|.+|+.|..|...++|=+.+||+|| .--.|+.+|+.+|
T Consensus 373 ~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHRvGRTaR---~gk~G~alL~l~p 436 (543)
T KOG0342|consen 373 FFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHRVGRTAR---EGKEGKALLLLAP 436 (543)
T ss_pred HHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHHhccccc---cCCCceEEEEeCh
Confidence 344455666899999999999999999999999999999999999999888 3233444444444
No 213
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=96.83 E-value=0.01 Score=54.69 Aligned_cols=108 Identities=16% Similarity=0.245 Sum_probs=60.3
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
.+++.||+|+|||-. +-++.+.+.....+.+++++... +........++.
T Consensus 36 ~l~l~G~~G~GKTHL-L~Ai~~~~~~~~~~~~v~y~~~~-~f~~~~~~~~~~---------------------------- 85 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHL-LQAIANEAQKQHPGKRVVYLSAE-EFIREFADALRD---------------------------- 85 (219)
T ss_dssp EEEEEESTTSSHHHH-HHHHHHHHHHHCTTS-EEEEEHH-HHHHHHHHHHHT----------------------------
T ss_pred ceEEECCCCCCHHHH-HHHHHHHHHhccccccceeecHH-HHHHHHHHHHHc----------------------------
Confidence 478999999999963 45555555444345566666432 343333222221
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEEeccCCccH
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMFSATLSKEI 302 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~SAT~~~~~ 302 (448)
.....+.+. +...++++||++|.+.........+-.++..+ ..+.++|+.|...|..+
T Consensus 86 -------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~~~~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 86 -------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLFNRLIESGKQLILTSDRPPSEL 144 (219)
T ss_dssp -------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHHHHHHHTTSEEEEEESS-TTTT
T ss_pred -------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHHHHHHhhCCeEEEEeCCCCccc
Confidence 011222222 34678899999998865422334444444443 34668887777776654
No 214
>KOG0341|consensus
Probab=96.81 E-value=0.00091 Score=64.48 Aligned_cols=44 Identities=43% Similarity=0.835 Sum_probs=42.1
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..|+|+|+.+++|+|++++..|+||++|..+++|-+.+||+||+
T Consensus 472 KDVLVATDVASKGLDFp~iqHVINyDMP~eIENYVHRIGRTGRs 515 (610)
T KOG0341|consen 472 KDVLVATDVASKGLDFPDIQHVINYDMPEEIENYVHRIGRTGRS 515 (610)
T ss_pred CceEEEecchhccCCCccchhhccCCChHHHHHHHHHhcccCCC
Confidence 47999999999999999999999999999999999999999993
No 215
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=96.80 E-value=0.001 Score=70.87 Aligned_cols=62 Identities=44% Similarity=0.820 Sum_probs=49.1
Q ss_pred HHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeee
Q psy1548 91 ILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155 (448)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ 155 (448)
+++.+.. ...|+|||+++++|+|.+++..|++|+.|...+.|.|.+||+||+-. .|..+++.
T Consensus 287 il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRaGr---~G~ai~~v 349 (629)
T PRK11634 287 TLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRAGR---AGRALLFV 349 (629)
T ss_pred HHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCCCC---cceEEEEe
Confidence 3344433 34799999999999999999999999999999999999999999432 24444444
No 216
>PRK08181 transposase; Validated
Probab=96.79 E-value=0.0075 Score=57.24 Aligned_cols=46 Identities=24% Similarity=0.250 Sum_probs=27.9
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 196 (448)
..++++++.||+|+|||.... ++...+.. .+..++++ +..+|+.++
T Consensus 104 ~~~~nlll~Gp~GtGKTHLa~-Aia~~a~~--~g~~v~f~-~~~~L~~~l 149 (269)
T PRK08181 104 AKGANLLLFGPPGGGKSHLAA-AIGLALIE--NGWRVLFT-RTTDLVQKL 149 (269)
T ss_pred hcCceEEEEecCCCcHHHHHH-HHHHHHHH--cCCceeee-eHHHHHHHH
Confidence 367899999999999995543 23332222 23345444 455666554
No 217
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.77 E-value=0.0011 Score=70.02 Aligned_cols=52 Identities=40% Similarity=0.783 Sum_probs=44.9
Q ss_pred HHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 91 ILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
+++.+.. ...|+|||+++++|||+++++.|++|+.|.....|-+.+||+||.
T Consensus 299 il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRiGRaGR~ 351 (572)
T PRK04537 299 LLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRIGRTARL 351 (572)
T ss_pred HHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhhcccccC
Confidence 3444433 348999999999999999999999999999999999999999983
No 218
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.77 E-value=0.0026 Score=61.65 Aligned_cols=63 Identities=17% Similarity=0.132 Sum_probs=48.1
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
++.. ...+++|.|+.|||||.+.+--++..+... -...++|++++|+..+..+...+......
T Consensus 8 ~i~~--~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l~~ 71 (315)
T PF00580_consen 8 IIRS--TEGPLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELLEE 71 (315)
T ss_dssp HHHS---SSEEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHhC--CCCCEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhcCc
Confidence 5555 678999999999999998766666655444 34458999999999999999988886543
No 219
>PRK04296 thymidine kinase; Provisional
Probab=96.76 E-value=0.0033 Score=56.55 Aligned_cols=37 Identities=19% Similarity=0.132 Sum_probs=23.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
|.=.++.||+|+|||... +-++...... +.+++++-|
T Consensus 2 g~i~litG~~GsGKTT~~-l~~~~~~~~~--g~~v~i~k~ 38 (190)
T PRK04296 2 AKLEFIYGAMNSGKSTEL-LQRAYNYEER--GMKVLVFKP 38 (190)
T ss_pred cEEEEEECCCCCHHHHHH-HHHHHHHHHc--CCeEEEEec
Confidence 344688999999999654 3444443322 446777766
No 220
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=96.76 E-value=0.0062 Score=63.77 Aligned_cols=109 Identities=13% Similarity=0.168 Sum_probs=57.4
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
..+++.|++|+|||.. +-++.+.+.....+.+++++. ..+++.+....+.. +
T Consensus 315 NpL~LyG~sGsGKTHL-L~AIa~~a~~~~~g~~V~Yit-aeef~~el~~al~~------~-------------------- 366 (617)
T PRK14086 315 NPLFIYGESGLGKTHL-LHAIGHYARRLYPGTRVRYVS-SEEFTNEFINSIRD------G-------------------- 366 (617)
T ss_pred CcEEEECCCCCCHHHH-HHHHHHHHHHhCCCCeEEEee-HHHHHHHHHHHHHh------c--------------------
Confidence 3489999999999954 334444443333344566554 44455443222211 0
Q ss_pred cCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCccH
Q psy1548 230 THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEI 302 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~~ 302 (448)
..+.+... +.++++||||++|.+.........+-.++..+. .++++|+.|-..|..+
T Consensus 367 ---------~~~~f~~~-------y~~~DLLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL 424 (617)
T PRK14086 367 ---------KGDSFRRR-------YREMDILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQL 424 (617)
T ss_pred ---------cHHHHHHH-------hhcCCEEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhh
Confidence 00111111 345688999999987553122333444554443 3567776555555443
No 221
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=96.73 E-value=0.0013 Score=68.13 Aligned_cols=44 Identities=48% Similarity=0.936 Sum_probs=42.1
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+++|||+++++|||.++++.|++|..|..+..|-|++|||||.
T Consensus 386 ~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRaGR~ 429 (475)
T PRK01297 386 IRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRTGRA 429 (475)
T ss_pred CcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCccCCC
Confidence 48999999999999999999999999999999999999999994
No 222
>KOG0348|consensus
Probab=96.71 E-value=0.0012 Score=66.28 Aligned_cols=44 Identities=39% Similarity=0.716 Sum_probs=41.0
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..|++||+.++||+|.|.|++|+.|+.|....+|=+.+||+.|+
T Consensus 498 ~~VLLcTDVAaRGLDlP~V~~vVQYd~P~s~adylHRvGRTARa 541 (708)
T KOG0348|consen 498 RAVLLCTDVAARGLDLPHVGLVVQYDPPFSTADYLHRVGRTARA 541 (708)
T ss_pred ceEEEehhhhhccCCCCCcCeEEEeCCCCCHHHHHHHhhhhhhc
Confidence 36999999999999999999999999999999999999887773
No 223
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.70 E-value=0.0058 Score=59.07 Aligned_cols=136 Identities=15% Similarity=0.203 Sum_probs=79.8
Q ss_pred cceeeeeC--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc---eEEEEE
Q psy1548 142 FGTKAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI---KVGVFF 216 (448)
Q Consensus 142 ~~~~~~~g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~---~v~~~~ 216 (448)
++..++.. .=|.+.++.|||||+.++.+.+.+....+...++|+.=|+..+.+++ +++|+. +...+.
T Consensus 236 ALdlLld~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dI--------GfLPG~eEeKm~PWm 307 (436)
T COG1875 236 ALDLLLDDDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDI--------GFLPGTEEEKMGPWM 307 (436)
T ss_pred HHHHhcCCCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccccc--------CcCCCchhhhccchH
Confidence 66666654 34677899999999999988888877666666788887887765332 122221 111111
Q ss_pred cCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCe----------eEEEecchhHHHhhhhhHHHHHHHHHhCC
Q psy1548 217 GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL----------KHFILDECDKMLEQLEMRRDVQEIFRSSP 286 (448)
Q Consensus 217 g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i----------~~lViDEah~l~~~~~~~~~~~~i~~~l~ 286 (448)
+. ..+..+.+... ==++-+.+...+.++.+.+..+ .++|||||+.+- ..++..++.+..
T Consensus 308 q~--i~DnLE~L~~~----~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLT-----pheikTiltR~G 376 (436)
T COG1875 308 QA--IFDNLEVLFSP----NEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLT-----PHELKTILTRAG 376 (436)
T ss_pred HH--HHhHHHHHhcc----cccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccC-----HHHHHHHHHhcc
Confidence 11 11122222211 0012344555554444332222 369999999653 456788888888
Q ss_pred CCCeEEEEec
Q psy1548 287 HTKQVMMFSA 296 (448)
Q Consensus 287 ~~~q~i~~SA 296 (448)
+..+++++.-
T Consensus 377 ~GsKIVl~gd 386 (436)
T COG1875 377 EGSKIVLTGD 386 (436)
T ss_pred CCCEEEEcCC
Confidence 8888887643
No 224
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=96.68 E-value=0.0051 Score=51.24 Aligned_cols=41 Identities=24% Similarity=0.186 Sum_probs=25.2
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
+..+++.||+|+|||..... ++..+.... ..++++.+....
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~-l~~~~~~~~--~~~~~~~~~~~~ 42 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARA-LARELGPPG--GGVIYIDGEDIL 42 (148)
T ss_pred CCEEEEECCCCCcHHHHHHH-HHhccCCCC--CCEEEECCEEcc
Confidence 56789999999999976432 333322211 246666666543
No 225
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.62 E-value=0.025 Score=56.03 Aligned_cols=136 Identities=13% Similarity=0.168 Sum_probs=66.9
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
+..|..+++.||||+|||.....-+....... +..++.++. +-..-.--.+.++.|+..+ ++.+..
T Consensus 134 ~~~g~ii~lvGptGvGKTTtiakLA~~~~~~~-G~~~V~lit-~D~~R~ga~EqL~~~a~~~-gv~~~~----------- 199 (374)
T PRK14722 134 MERGGVFALMGPTGVGKTTTTAKLAARCVMRF-GASKVALLT-TDSYRIGGHEQLRIFGKIL-GVPVHA----------- 199 (374)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEe-cccccccHHHHHHHHHHHc-CCceEe-----------
Confidence 34578999999999999977543332222221 112343333 2111111123455555444 433322
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCcc-HHH
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKE-IRP 304 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~-~~~ 304 (448)
+-+++.+...+.. +.+.++++||.+-...........+..+.....+...++.+|||...+ +.+
T Consensus 200 -----------~~~~~~l~~~l~~----l~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~l~e 264 (374)
T PRK14722 200 -----------VKDGGDLQLALAE----LRNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDTLNE 264 (374)
T ss_pred -----------cCCcccHHHHHHH----hcCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHHHHH
Confidence 2333333333321 344577889988644222122333333322223334578889998654 344
Q ss_pred HHHHhc
Q psy1548 305 VCKKFM 310 (448)
Q Consensus 305 ~~~~~l 310 (448)
.+..|.
T Consensus 265 vi~~f~ 270 (374)
T PRK14722 265 VVQAYR 270 (374)
T ss_pred HHHHHH
Confidence 555554
No 226
>KOG0335|consensus
Probab=96.59 E-value=0.0013 Score=65.95 Aligned_cols=43 Identities=56% Similarity=0.958 Sum_probs=41.3
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.++|||+++.||+|.+.|+.|++|+.|..+++|=+.+||+||+
T Consensus 389 pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d~YvHRIGRTGR~ 431 (482)
T KOG0335|consen 389 PVLVATNVAARGLDIPNVKHVINYDMPADIDDYVHRIGRTGRV 431 (482)
T ss_pred ceEEEehhhhcCCCCCCCceeEEeecCcchhhHHHhccccccC
Confidence 8999999999999999999999999999999999999998883
No 227
>PRK14974 cell division protein FtsY; Provisional
Probab=96.57 E-value=0.024 Score=55.47 Aligned_cols=55 Identities=11% Similarity=0.215 Sum_probs=41.8
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
..+++++|.+.++.........+..+.+...+..-++.++|+...+....++.|.
T Consensus 222 ~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~ 276 (336)
T PRK14974 222 GIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFN 276 (336)
T ss_pred CCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHH
Confidence 4568999999988643367777888877777777788999998777666666654
No 228
>PTZ00424 helicase 45; Provisional
Probab=96.53 E-value=0.002 Score=65.02 Aligned_cols=43 Identities=44% Similarity=1.025 Sum_probs=41.2
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..|+|||+.+++|+|.++++.|++++.|.....|-|.+|||||
T Consensus 318 ~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR 360 (401)
T PTZ00424 318 TRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGR 360 (401)
T ss_pred CCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeeccccccc
Confidence 4899999999999999999999999999999999999999998
No 229
>KOG0330|consensus
Probab=96.52 E-value=0.0024 Score=61.75 Aligned_cols=65 Identities=38% Similarity=0.707 Sum_probs=51.2
Q ss_pred cCCcccCCCCHHHHHHH---------hhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 79 SSGFRDFLLKPEILRAI---------VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..+|...+++-++.... .....|+|||++++||+|.+-|+.|+||+.|....+|=+..||++|+.
T Consensus 322 ~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 322 NLGFQAIPLHGQMSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred hcCcceecccchhhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 34666666665543321 122389999999999999999999999999999999999988888744
No 230
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.51 E-value=0.044 Score=55.65 Aligned_cols=132 Identities=17% Similarity=0.224 Sum_probs=68.3
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
.|+.+++.+|||+|||.+..--+....... .+.++.++. |.+.-+. +.++.+.... ++.+
T Consensus 220 ~~~~i~~vGptGvGKTTt~~kLA~~~~~~~-~g~~V~li~~D~~r~~a~---eqL~~~a~~~-~vp~------------- 281 (424)
T PRK05703 220 QGGVVALVGPTGVGKTTTLAKLAARYALLY-GKKKVALITLDTYRIGAV---EQLKTYAKIM-GIPV------------- 281 (424)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhc-CCCeEEEEECCccHHHHH---HHHHHHHHHh-CCce-------------
Confidence 467899999999999976543222221011 223444444 3333222 2344444333 3322
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh-CCCCCeEEEEeccCCc-cHH
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS-SPHTKQVMMFSATLSK-EIR 303 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~-l~~~~q~i~~SAT~~~-~~~ 303 (448)
..+.++..+...+.. +.+.++++||.+-+..........+..++.. ..+....+.+|||... .+.
T Consensus 282 ---------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~~l~ 348 (424)
T PRK05703 282 ---------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYEDLK 348 (424)
T ss_pred ---------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHHHHH
Confidence 222344445554442 2356889999885432221334455555552 2233457888998764 455
Q ss_pred HHHHHhc
Q psy1548 304 PVCKKFM 310 (448)
Q Consensus 304 ~~~~~~l 310 (448)
+....|-
T Consensus 349 ~~~~~f~ 355 (424)
T PRK05703 349 DIYKHFS 355 (424)
T ss_pred HHHHHhC
Confidence 5555553
No 231
>KOG0921|consensus
Probab=96.40 E-value=0.011 Score=62.91 Aligned_cols=247 Identities=16% Similarity=0.150 Sum_probs=128.2
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCC--eEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSN--VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~--~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
...-++|.+.||+|||.-+.--+|..+..+..+ .-+.+--|++-.+..+.+.+-+-. ...++-.+|-.......
T Consensus 392 dn~v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er----~e~~g~tvgy~vRf~Sa 467 (1282)
T KOG0921|consen 392 ENRVVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANER----GEEVGETCGYNVRFDSA 467 (1282)
T ss_pred cCceeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhh----HHhhccccccccccccc
Confidence 345678899999999998888888776555432 234444577776666555444321 11222222222111111
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCcc----
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKE---- 301 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~---- 301 (448)
..... --|+.+|-+-+++++.... ..+.++++||.|..--..+|...+..=+....+...++++|||+..+
T Consensus 468 ~prpy--g~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdTd~f~~ 542 (1282)
T KOG0921|consen 468 TPRPY--GSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDTDLFTN 542 (1282)
T ss_pred ccccc--cceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccchhhhhh
Confidence 00111 2599999999999887654 34567999999964322234333333333333344445555554321
Q ss_pred ----------------HHHHHHHhcCCCeEEE-----------EcCcccccccc--eeEEEEEcC---------------
Q psy1548 302 ----------------IRPVCKKFMHDPMEVY-----------VDDEAKLTLHG--LQQHYVKLK--------------- 337 (448)
Q Consensus 302 ----------------~~~~~~~~l~~~~~i~-----------~~~~~~~~~~~--i~~~~~~~~--------------- 337 (448)
+..++......+.... .++. ...... -+..-..+.
T Consensus 543 ~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~-~~~~~ddK~~n~n~~~dd~~~~~~~~am~~~s 621 (1282)
T KOG0921|consen 543 FFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDE-EDEEVDDKGRNMNILCDPSYNESTRTAMSRLS 621 (1282)
T ss_pred hhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccc-cCchhhhcccccccccChhhcchhhhhhhcch
Confidence 1122221111111000 0000 000000 000000000
Q ss_pred cch----HHHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhC-------CCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 338 ENE----KNKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQ-------NFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 338 ~~~----k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~-------g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+.+ -.+++...+.. .-.+-+++|.+-=...-.|...|... -.+...+|+.++..+..++.+....|.
T Consensus 622 e~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~gv 700 (1282)
T KOG0921|consen 622 EKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPEGV 700 (1282)
T ss_pred hhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccccc
Confidence 000 11222222211 12456888988888888888877653 346888999999999999999888877
No 232
>KOG0298|consensus
Probab=96.39 E-value=0.013 Score=64.72 Aligned_cols=154 Identities=17% Similarity=0.151 Sum_probs=92.0
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc---------------cCCCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET---------------TDSNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~---------------~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
+......|+++++.-..|+|||.+-+...+..... ....+-+|||||.- +..||..++..-...
T Consensus 367 ~~~~~~~g~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~ 445 (1394)
T KOG0298|consen 367 CSGDKKHGKRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISS 445 (1394)
T ss_pred hcCCccCCcceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhccc
Confidence 44555668899999999999998866555443211 01234689999985 567877777665532
Q ss_pred CCCceEEEEEcCcccHHh-HHHHhcCCCcEEEEcHHHHHHHHHCC--------------CCcC----CCee--EEEecch
Q psy1548 207 MSNIKVGVFFGGLPIQKD-EEYLKTHNPQIVVGTPGRILALVRNK--------------KLNL----SLLK--HFILDEC 265 (448)
Q Consensus 207 ~~~~~v~~~~g~~~~~~~-~~~l~~~~~~IlV~Tp~~l~~~l~~~--------------~~~~----~~i~--~lViDEa 265 (448)
.+++....|-...... ...+- ++||++||...|..-+... ...+ -.+. .|++|||
T Consensus 446 --~lKv~~Y~Girk~~~~~~~el~--~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEa 521 (1394)
T KOG0298|consen 446 --LLKVLLYFGIRKTFWLSPFELL--QYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEA 521 (1394)
T ss_pred --cceEEEEechhhhcccCchhhh--ccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHH
Confidence 4577776664321111 11121 4899999999986544221 1111 1111 2899999
Q ss_pred hHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHH
Q psy1548 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRP 304 (448)
Q Consensus 266 h~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~ 304 (448)
+++-. ......++..+++.. -..+.|.|+-..+.+
T Consensus 522 QMves---ssS~~a~M~~rL~~i-n~W~VTGTPiq~Idd 556 (1394)
T KOG0298|consen 522 QMVES---SSSAAAEMVRRLHAI-NRWCVTGTPIQKIDD 556 (1394)
T ss_pred Hhhcc---hHHHHHHHHHHhhhh-ceeeecCCchhhhhh
Confidence 95533 344555566666543 357788885433333
No 233
>KOG0345|consensus
Probab=96.39 E-value=0.0028 Score=62.76 Aligned_cols=53 Identities=30% Similarity=0.640 Sum_probs=44.5
Q ss_pred HHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 90 EILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..++...+ ...|+.||+.+.||||++++++|++|+.|.....|-+..||++|+
T Consensus 298 k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~GRTaR~ 351 (567)
T KOG0345|consen 298 KVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRCGRTARA 351 (567)
T ss_pred HHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhcchhhhc
Confidence 34444444 457999999999999999999999999999998888888887773
No 234
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=96.37 E-value=0.15 Score=43.79 Aligned_cols=38 Identities=26% Similarity=0.318 Sum_probs=23.2
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
+++.||+|+|||.....-+.. ... .+..++++.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~-~~~--~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALN-IAT--KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHH-HHh--cCCEEEEEECCcch
Confidence 578999999999764333322 222 34467777655443
No 235
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.37 E-value=0.0081 Score=61.36 Aligned_cols=152 Identities=16% Similarity=0.220 Sum_probs=77.9
Q ss_pred eeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH-hhccCCCceEEEEEcCcccHH-hHHHH--h
Q psy1548 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER-FSKYMSNIKVGVFFGGLPIQK-DEEYL--K 229 (448)
Q Consensus 154 i~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~v~~~~g~~~~~~-~~~~l--~ 229 (448)
..+.||||||++.+-.+|.....+ ...-|+.+............+.. ++..+ -..-.+.+++....- ....+ .
T Consensus 2 f~matgsgkt~~ma~lil~~y~kg--yr~flffvnq~nilekt~~nftd~~s~ky-lf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKG--YRNFLFFVNQANILEKTKLNFTDSVSSKY-LFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhc--hhhEEEEecchhHHHHHHhhcccchhhhH-hhhhhhhcCCceeeeeeecccCcc
Confidence 467899999999877777766443 23466666665555443322221 00000 000011112211110 00111 1
Q ss_pred cCCCcEEEEcHHHHHHHHHC---CCCc---CCCee-EEEecchhHHHhh--------hhhHHHHHHHHH-h--CCCCCeE
Q psy1548 230 THNPQIVVGTPGRILALVRN---KKLN---LSLLK-HFILDECDKMLEQ--------LEMRRDVQEIFR-S--SPHTKQV 291 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~---~~~~---~~~i~-~lViDEah~l~~~--------~~~~~~~~~i~~-~--l~~~~q~ 291 (448)
+....|.++|.+.|...+.+ ..+. +.+.+ .++-||||++... ......++..+. . -.+..-+
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~ 158 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLL 158 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCcee
Confidence 22367999999999887744 3333 34444 3667999998654 112222222221 1 1234457
Q ss_pred EEEeccCCccHHHHHHHh
Q psy1548 292 MMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 292 i~~SAT~~~~~~~~~~~~ 309 (448)
+.+|||.|.+ .....+|
T Consensus 159 lef~at~~k~-k~v~~ky 175 (812)
T COG3421 159 LEFSATIPKE-KSVEDKY 175 (812)
T ss_pred ehhhhcCCcc-ccHHHHh
Confidence 8899999843 4444444
No 236
>KOG1132|consensus
Probab=96.36 E-value=0.014 Score=62.28 Aligned_cols=68 Identities=18% Similarity=0.165 Sum_probs=45.4
Q ss_pred hhhhccccccceeeee----CcceeeeccCCChhHHHHHHHHHHhh---h-----------c--------c---------
Q psy1548 133 LHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQL---E-----------T--------T--------- 177 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~----g~~vli~apTGsGKT~~~~l~~l~~l---~-----------~--------~--------- 177 (448)
|.. .+..++. +.+.++.+|||+|||++.+-..|... . . .
T Consensus 26 Q~a------~M~rvl~~L~~~q~~llESPTGTGKSLsLLCS~LAW~q~~k~~~~~~~~s~~~~~~~p~~~s~~~g~~s~e 99 (945)
T KOG1132|consen 26 QLA------FMTRVLSCLDRKQNGLLESPTGTGKSLSLLCSTLAWQQHLKSRKPKGKISERKAGFIPTQPSDSGGEKSEE 99 (945)
T ss_pred HHH------HHHHHHHHHHHhhhhhccCCCCCCccHHHHHHHHHHHHHhhccccccchhhhhccccCCCCccCCCCchhh
Confidence 777 5555444 57899999999999988665554332 1 0 0
Q ss_pred ---C-----CCeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 178 ---D-----SNVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 178 ---~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
. +.+++.|-.-|..-..|+.+++++..-.
T Consensus 100 ~~e~~~~~~~ipkIyyaSRTHsQltQvvrElrrT~Y~ 136 (945)
T KOG1132|consen 100 AGEPIACYTGIPKIYYASRTHSQLTQVVRELRRTGYR 136 (945)
T ss_pred hcCccccccCCceEEEecchHHHHHHHHHHHhhcCCC
Confidence 0 1356677777777778888888876543
No 237
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.062 Score=53.40 Aligned_cols=132 Identities=17% Similarity=0.198 Sum_probs=69.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
++.+.+.||||+|||.....-+.. +... +.++.++. |.|.-+.+ +++.+.... ++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~-L~~~--GkkVglI~aDt~RiaAvE---QLk~yae~l-gip--------------- 298 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQ-FHGK--KKTVGFITTDHSRIGTVQ---QLQDYVKTI-GFE--------------- 298 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHH-HHHc--CCcEEEEecCCcchHHHH---HHHHHhhhc-CCc---------------
Confidence 367899999999999765443332 2222 23444443 34422222 233333222 222
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC-ccHHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS-KEIRPV 305 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~-~~~~~~ 305 (448)
-+.+.+|..+.+.+..-.- -.+.++++||-+=+..........+..+++...+..-++.+|||.. .++...
T Consensus 299 -------v~v~~d~~~L~~aL~~lk~-~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d~~~i 370 (436)
T PRK11889 299 -------VIAVRDEAAMTRALTYFKE-EARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIEI 370 (436)
T ss_pred -------EEecCCHHHHHHHHHHHHh-ccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHHHHHH
Confidence 2223466666555432110 1146788888886654332334455555554444444677898765 455677
Q ss_pred HHHhc
Q psy1548 306 CKKFM 310 (448)
Q Consensus 306 ~~~~l 310 (448)
++.|-
T Consensus 371 ~~~F~ 375 (436)
T PRK11889 371 ITNFK 375 (436)
T ss_pred HHHhc
Confidence 76664
No 238
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=96.31 E-value=0.017 Score=59.38 Aligned_cols=44 Identities=16% Similarity=0.229 Sum_probs=27.2
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
..+++.||+|+|||... -++.+.+.....+.+++++ +...+..+
T Consensus 149 ~~l~l~G~~G~GKThL~-~ai~~~~~~~~~~~~v~yi-~~~~~~~~ 192 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLL-HAIGNYILEKNPNAKVVYV-TSEKFTND 192 (450)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhCCCCeEEEE-EHHHHHHH
Confidence 56899999999999653 3444444433334456666 44445444
No 239
>KOG1001|consensus
Probab=96.27 E-value=0.022 Score=60.78 Aligned_cols=110 Identities=20% Similarity=0.234 Sum_probs=69.0
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccC------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTD------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 223 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 223 (448)
+-.|+.-..|-|||...+..++..-...+ .....|++||+.. ..|+..++.+..... .+.+.+++| ...
T Consensus 153 ~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s~-~~qW~~elek~~~~~-~l~v~v~~g---r~k 227 (674)
T KOG1001|consen 153 RGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTSL-LTQWKTELEKVTEED-KLSIYVYHG---RTK 227 (674)
T ss_pred ccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchHH-HHHHHHHHhccCCcc-ceEEEEecc---ccc
Confidence 34677888999999876555443322222 3456899999864 456666666665543 667777776 122
Q ss_pred hHHHHhcCCCcEEEEcHHHHHH-HHHCCCCcCCCeeEEEecchhHHHhh
Q psy1548 224 DEEYLKTHNPQIVVGTPGRILA-LVRNKKLNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 224 ~~~~l~~~~~~IlV~Tp~~l~~-~l~~~~~~~~~i~~lViDEah~l~~~ 271 (448)
....+. .++|+++|++.+.. .+.. -..-.+|+||+|.+...
T Consensus 228 d~~el~--~~dVVltTy~il~~~~l~~-----i~w~Riildea~~ikn~ 269 (674)
T KOG1001|consen 228 DKSELN--SYDVVLTTYDILKNSPLVK-----IKWLRIVLDEAHTIKNK 269 (674)
T ss_pred ccchhc--CCceEEeeHHHhhcccccc-----eeEEEEEeccccccCCc
Confidence 222222 37899999998764 1111 12235999999987664
No 240
>KOG0328|consensus
Probab=96.24 E-value=0.0053 Score=57.00 Aligned_cols=44 Identities=41% Similarity=0.979 Sum_probs=41.3
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..+|+++|+...||||.+.|..|+||+.|...+.|=+.+||+||
T Consensus 316 ~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGR 359 (400)
T KOG0328|consen 316 KSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGR 359 (400)
T ss_pred CceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccc
Confidence 35999999999999999999999999999999899999999888
No 241
>PRK05642 DNA replication initiation factor; Validated
Probab=96.21 E-value=0.015 Score=54.22 Aligned_cols=45 Identities=13% Similarity=0.235 Sum_probs=26.3
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
+.+++|+|++|.+.........+-.++..+......++++++.++
T Consensus 97 ~~d~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p 141 (234)
T PRK05642 97 QYELVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSP 141 (234)
T ss_pred hCCEEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCH
Confidence 456899999997743213344466666555443334555666543
No 242
>KOG1015|consensus
Probab=96.16 E-value=0.2 Score=54.20 Aligned_cols=149 Identities=13% Similarity=0.181 Sum_probs=79.1
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhh-cc-CCCeEEEEeeccHHHHHHHHHHHHHhhccCC---CceEEEEEcCcccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLE-TT-DSNVYVLVMCHTRELAFQISKEYERFSKYMS---NIKVGVFFGGLPIQK 223 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~-~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~v~~~~g~~~~~~ 223 (448)
|--+|+.-=.|.|||+.. +..++.+. .. -+-.++|||||...+ ..|...|.+|...+. .+.|..+..-.....
T Consensus 696 GsGcILAHcMGLGKTlQV-vtflhTvL~c~klg~ktaLvV~PlNt~-~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~ 773 (1567)
T KOG1015|consen 696 GSGCILAHCMGLGKTLQV-VTFLHTVLLCDKLGFKTALVVCPLNTA-LNWMNEFEKWMEGLEDDEKLEVSELATVKRPEE 773 (1567)
T ss_pred CcchHHHHhhcccceehh-hHHHHHHHHhhccCCceEEEEcchHHH-HHHHHHHHHhcccccccccceeehhhhccChHH
Confidence 445666667899999763 33333321 11 234589999998865 456778888876431 234443333222233
Q ss_pred hHHHH---hcCCCcEEEEcHHHHHHHHHCCCC-------------cCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 224 DEEYL---KTHNPQIVVGTPGRILALVRNKKL-------------NLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 224 ~~~~l---~~~~~~IlV~Tp~~l~~~l~~~~~-------------~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
....| ... -.|.|.-...+..+...+.. --..-+++|+||+|.+-.. ...+...+.....
T Consensus 774 R~~~L~~W~~~-ggVmIiGYdmyRnLa~gr~vk~rk~ke~f~k~lvdpGPD~vVCDE~HiLKNe---ksa~Skam~~irt 849 (1567)
T KOG1015|consen 774 RSYMLQRWQED-GGVMIIGYDMYRNLAQGRNVKSRKLKEIFNKALVDPGPDFVVCDEGHILKNE---KSAVSKAMNSIRT 849 (1567)
T ss_pred HHHHHHHHHhc-CCEEEEehHHHHHHhcccchhhhHHHHHHHHhccCCCCCeEEecchhhhccc---hHHHHHHHHHHHh
Confidence 32222 222 25766666665554432211 1134578999999976443 3333333443333
Q ss_pred CCeEEEEecc-CCccHHH
Q psy1548 288 TKQVMMFSAT-LSKEIRP 304 (448)
Q Consensus 288 ~~q~i~~SAT-~~~~~~~ 304 (448)
.++ |++|.| +-+++.+
T Consensus 850 kRR-I~LTGTPLQNNLmE 866 (1567)
T KOG1015|consen 850 KRR-IILTGTPLQNNLME 866 (1567)
T ss_pred hee-EEeecCchhhhhHH
Confidence 444 555555 4444333
No 243
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=96.15 E-value=0.087 Score=53.36 Aligned_cols=37 Identities=19% Similarity=0.278 Sum_probs=24.4
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
..+++.||+|+|||... ..+.+.+.....+..++++.
T Consensus 137 n~l~l~G~~G~GKThL~-~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLL-HAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred CeEEEECCCCCcHHHHH-HHHHHHHHHhCCCCcEEEEE
Confidence 46899999999999654 44555544433345666664
No 244
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=96.15 E-value=0.012 Score=64.13 Aligned_cols=44 Identities=27% Similarity=0.392 Sum_probs=41.8
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
+++|||+++++|||.++++.|++|..|..+..|-|++|||||..
T Consensus 331 ~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRiGRaGR~G 374 (742)
T TIGR03817 331 LGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQAGRAGRRG 374 (742)
T ss_pred eEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhccccCCCC
Confidence 78999999999999999999999999999999999999999953
No 245
>PRK06893 DNA replication initiation factor; Validated
Probab=96.07 E-value=0.02 Score=53.16 Aligned_cols=47 Identities=17% Similarity=0.246 Sum_probs=28.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCcc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKE 301 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~ 301 (448)
.+.+++|+||+|.+.........+..++.... ...+++++|++.++.
T Consensus 90 ~~~dlLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~ 137 (229)
T PRK06893 90 EQQDLVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPH 137 (229)
T ss_pred ccCCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChH
Confidence 45678999999987543123334445554443 345677777876544
No 246
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=95.99 E-value=0.046 Score=56.03 Aligned_cols=48 Identities=27% Similarity=0.279 Sum_probs=30.3
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~ 199 (448)
..+++.|++|+|||.. +-++.+.+.....+.+++++.+ .++..++...
T Consensus 142 npl~i~G~~G~GKTHL-l~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~ 189 (450)
T PRK14087 142 NPLFIYGESGMGKTHL-LKAAKNYIESNFSDLKVSYMSG-DEFARKAVDI 189 (450)
T ss_pred CceEEECCCCCcHHHH-HHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHH
Confidence 4689999999999954 3455555544444556766654 4555554433
No 247
>PHA02533 17 large terminase protein; Provisional
Probab=95.96 E-value=0.031 Score=58.30 Aligned_cols=151 Identities=13% Similarity=0.119 Sum_probs=86.5
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..++++|.. .+..+..++-.++..+-..|||.+....++...... .+..+++++|+..-|..+.+.++.+.
T Consensus 56 ~Pf~L~p~Q~~------i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~~~-~~~~v~i~A~~~~QA~~vF~~ik~~i 128 (534)
T PHA02533 56 IKVQMRDYQKD------MLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVCFN-KDKNVGILAHKASMAAEVLDRTKQAI 128 (534)
T ss_pred eecCCcHHHHH------HHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHHhC-CCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 47778888999 555444456668999999999988765454433333 34589999999999999988888776
Q ss_pred ccCCCc-eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 205 KYMSNI-KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 205 ~~~~~~-~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
...|.. +....... .....+.++ ..|.+.|.+ .+...-.+..++++||+|.+.+. ...+..+..
T Consensus 129 e~~P~l~~~~i~~~~----~~~I~l~NG-S~I~~lss~-------~~t~rG~~~~~liiDE~a~~~~~---~e~~~ai~p 193 (534)
T PHA02533 129 ELLPDFLQPGIVEWN----KGSIELENG-SKIGAYASS-------PDAVRGNSFAMIYIDECAFIPNF---IDFWLAIQP 193 (534)
T ss_pred HhCHHHhhcceeecC----ccEEEeCCC-CEEEEEeCC-------CCccCCCCCceEEEeccccCCCH---HHHHHHHHH
Confidence 655432 11111100 011111233 445444422 11122235568999999976432 222333333
Q ss_pred hCCC--CCeEEEEecc
Q psy1548 284 SSPH--TKQVMMFSAT 297 (448)
Q Consensus 284 ~l~~--~~q~i~~SAT 297 (448)
.+.. ..+++.+|++
T Consensus 194 ~lasg~~~r~iiiSTp 209 (534)
T PHA02533 194 VISSGRSSKIIITSTP 209 (534)
T ss_pred HHHcCCCceEEEEECC
Confidence 2222 2356666655
No 248
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.92 E-value=0.097 Score=46.52 Aligned_cols=48 Identities=19% Similarity=0.129 Sum_probs=30.7
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
+++.||+|+|||...+--+...+. .+..++|++. .+-..++.+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~---~g~~v~~~s~-e~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA---RGEPGLYVTL-EESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH---CCCcEEEEEC-CCCHHHHHHHHHHc
Confidence 689999999999764433333332 2346777764 44566766666665
No 249
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.92 E-value=0.046 Score=55.03 Aligned_cols=36 Identities=22% Similarity=0.393 Sum_probs=23.0
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEe
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVM 186 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil 186 (448)
.++++.||+|+|||.+. --++..+.....+..++++
T Consensus 56 ~~~lI~G~~GtGKT~l~-~~v~~~l~~~~~~~~~v~i 91 (394)
T PRK00411 56 LNVLIYGPPGTGKTTTV-KKVFEELEEIAVKVVYVYI 91 (394)
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHHHHhcCCcEEEEE
Confidence 67999999999999763 3444444333223445555
No 250
>KOG0343|consensus
Probab=95.90 E-value=0.0061 Score=61.62 Aligned_cols=61 Identities=36% Similarity=0.543 Sum_probs=49.1
Q ss_pred HhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 95 ~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
.....-|+.||++++||+|+|.|.+|+.++-|..+++|=+.+||+.| .--.|+++++..|.
T Consensus 362 ~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPedv~tYIHRvGRtAR---~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 362 VRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPEDVDTYIHRVGRTAR---YKERGESLLMLTPS 422 (758)
T ss_pred HHhcceEEEeehhhhccCCCcccceEEEecCchhHHHHHHHhhhhhc---ccCCCceEEEEcch
Confidence 34455799999999999999999999999999999999988887655 44456666665554
No 251
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=95.88 E-value=0.048 Score=55.07 Aligned_cols=147 Identities=13% Similarity=0.172 Sum_probs=78.6
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH-HHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE-LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~-L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
.++.|+.|||||.+..+-++..+...+.+.+++++-|+.. |...+...+......+ ++....-....+. .. .+..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~-g~~~~~~~~~~~~--~i-~~~~ 79 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIE-GINYEFKKSKSSM--EI-KILN 79 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHc-CChhheeecCCcc--EE-EecC
Confidence 5778999999999988887777666423468899989887 6666777777655544 3321111111110 00 0111
Q ss_pred CCCcEEEEcH-HHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHh
Q psy1548 231 HNPQIVVGTP-GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 231 ~~~~IlV~Tp-~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~ 309 (448)
.+..|++..- +...+ ++ ....+.++.+|||..+.. .....+..-++. +...+.+++|.+++....-+.+.|
T Consensus 80 ~g~~i~f~g~~d~~~~-ik----~~~~~~~~~idEa~~~~~--~~~~~l~~rlr~-~~~~~~i~~t~NP~~~~~w~~~~f 151 (396)
T TIGR01547 80 TGKKFIFKGLNDKPNK-LK----SGAGIAIIWFEEASQLTF--EDIKELIPRLRE-TGGKKFIIFSSNPESPLHWVKKRF 151 (396)
T ss_pred CCeEEEeecccCChhH-hh----CcceeeeehhhhhhhcCH--HHHHHHHHHhhc-cCCccEEEEEcCcCCCccHHHHHH
Confidence 0134555433 21111 11 123368899999998744 322333222322 122224677777655433444444
Q ss_pred c
Q psy1548 310 M 310 (448)
Q Consensus 310 l 310 (448)
.
T Consensus 152 ~ 152 (396)
T TIGR01547 152 I 152 (396)
T ss_pred H
Confidence 4
No 252
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=95.88 E-value=0.0021 Score=56.63 Aligned_cols=125 Identities=20% Similarity=0.192 Sum_probs=52.4
Q ss_pred eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCC
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
++.|+-|-|||.+..+.+...+... ..+++|.+|+.+=++.+++.+..-.... +.+.. ..........+....
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~--~~~I~vtAP~~~~~~~lf~~~~~~l~~~-~~~~~----~~~~~~~~~~~~~~~ 73 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKG--KIRILVTAPSPENVQTLFEFAEKGLKAL-GYKEE----KKKRIGQIIKLRFNK 73 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-------EEEE-SS--S-HHHHHCC-------------------------------C
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhc--CceEEEecCCHHHHHHHHHHHHhhcccc-ccccc----ccccccccccccccc
Confidence 4789999999987665554433222 2579999999987777666554433222 22210 000000011111123
Q ss_pred CcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
..|-+..|+.+...- ...+++|||||=.+.- +.+..+++.. ..++||.|+..
T Consensus 74 ~~i~f~~Pd~l~~~~-------~~~DlliVDEAAaIp~-----p~L~~ll~~~----~~vv~stTi~G 125 (177)
T PF05127_consen 74 QRIEFVAPDELLAEK-------PQADLLIVDEAAAIPL-----PLLKQLLRRF----PRVVFSTTIHG 125 (177)
T ss_dssp CC--B--HHHHCCT-----------SCEEECTGGGS-H-----HHHHHHHCCS----SEEEEEEEBSS
T ss_pred ceEEEECCHHHHhCc-------CCCCEEEEechhcCCH-----HHHHHHHhhC----CEEEEEeeccc
Confidence 567777787654321 2347899999985533 2344443322 35677888753
No 253
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.85 E-value=0.025 Score=52.68 Aligned_cols=18 Identities=17% Similarity=0.327 Sum_probs=15.2
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.||+|+|||-..
T Consensus 45 ~~~l~l~Gp~G~GKThLl 62 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLL 62 (235)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 468999999999999553
No 254
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=95.80 E-value=0.0082 Score=63.49 Aligned_cols=47 Identities=36% Similarity=0.425 Sum_probs=42.1
Q ss_pred hccceeEeeccccCCcccc---cce-----eEeeccCCCCchhhhhhhccccccc
Q psy1548 97 DCWRILVATNLFGRGMDIE---RVN-----IVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 97 ~~~~~~~~~~~~~~~~d~~---~~~-----~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..+.|+||||+++||+|++ +|. .|++++.|...+.|.+.+||+||..
T Consensus 520 ~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG 574 (656)
T PRK12898 520 QRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQG 574 (656)
T ss_pred CCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCC
Confidence 3468999999999999999 676 8999999999999999999999943
No 255
>KOG0326|consensus
Probab=95.80 E-value=0.0066 Score=57.36 Aligned_cols=43 Identities=58% Similarity=1.126 Sum_probs=41.3
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
+.+|||+++.||||...+..|+||++|...+.|-+.+||+||.
T Consensus 374 rnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRF 416 (459)
T KOG0326|consen 374 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRF 416 (459)
T ss_pred ceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccC
Confidence 7899999999999999999999999999999999999999983
No 256
>KOG0329|consensus
Probab=95.77 E-value=0.0041 Score=56.87 Aligned_cols=41 Identities=98% Similarity=1.509 Sum_probs=39.2
Q ss_pred eEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 102 ~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.|+|+++|||+|...+..++||+.|..-+.|-+..+||||.
T Consensus 302 ~vat~lfgrgmdiervNi~~NYdmp~~~DtYlHrv~rAgrf 342 (387)
T KOG0329|consen 302 LVATDLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 342 (387)
T ss_pred hHHhhhhccccCcccceeeeccCCCCCchHHHHHhhhhhcc
Confidence 79999999999999999999999999999999999999883
No 257
>KOG0350|consensus
Probab=95.77 E-value=0.0058 Score=61.02 Aligned_cols=60 Identities=32% Similarity=0.592 Sum_probs=46.2
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHH
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTA 164 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~ 164 (448)
.|+||+++..||||..++..|+||+.|-....|=+.+||++||... | ..+..-++-|+++
T Consensus 485 ~vLIcSD~laRGiDv~~v~~VINYd~P~~~ktyVHR~GRTARAgq~---G--~a~tll~~~~~r~ 544 (620)
T KOG0350|consen 485 NVLICSDALARGIDVNDVDNVINYDPPASDKTYVHRAGRTARAGQD---G--YAITLLDKHEKRL 544 (620)
T ss_pred eEEEehhhhhcCCcccccceEeecCCCchhhHHHHhhcccccccCC---c--eEEEeeccccchH
Confidence 8999999999999999999999999999998888887776664322 1 2233445556664
No 258
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=95.76 E-value=0.028 Score=58.17 Aligned_cols=135 Identities=13% Similarity=0.153 Sum_probs=77.7
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhh-ccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLE-TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~-~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
+.+++..|-|.|||......++..+. ....+..+++.+++++-|..+++.++.+....|.+.... +. .. .
T Consensus 23 ~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~~~~~l~~~~--~~-----~~--~ 93 (477)
T PF03354_consen 23 REVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIEASPELRKRK--KP-----KI--I 93 (477)
T ss_pred EEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHHhChhhccch--hh-----hh--h
Confidence 56788899999999776555554443 334567899999999999999999998877654332110 00 00 0
Q ss_pred hcCCCcEEEEcHHHHHHHHHC--CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 229 KTHNPQIVVGTPGRILALVRN--KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
....-.|.....+.....+.. +..+-.+..++|+||+|.+-+. .....+..-+... ++.+++..|
T Consensus 94 ~~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~-~~~~~l~~g~~~r-~~pl~~~IS 160 (477)
T PF03354_consen 94 KSNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDD-ELYDALESGMGAR-PNPLIIIIS 160 (477)
T ss_pred hhhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCH-HHHHHHHhhhccC-CCceEEEEe
Confidence 000012222221222222211 2233345689999999988664 4555555544443 344555443
No 259
>PLN03025 replication factor C subunit; Provisional
Probab=95.75 E-value=0.11 Score=50.81 Aligned_cols=39 Identities=21% Similarity=0.261 Sum_probs=25.6
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++++||+|.|... ....+...+...+..+.+++.+
T Consensus 98 ~~~kviiiDE~d~lt~~--aq~aL~~~lE~~~~~t~~il~~ 136 (319)
T PLN03025 98 GRHKIVILDEADSMTSG--AQQALRRTMEIYSNTTRFALAC 136 (319)
T ss_pred CCeEEEEEechhhcCHH--HHHHHHHHHhcccCCceEEEEe
Confidence 35789999999988663 3444555566555566655543
No 260
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.70 E-value=0.059 Score=58.81 Aligned_cols=118 Identities=14% Similarity=0.102 Sum_probs=67.6
Q ss_pred hhhhhhccccccceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 131 TYLHRVARAGRFGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
+-|.. ++..++.+ +-+++.|+.|+|||... -.+...+.. .+.+++.++||-.-+..+. .-. +
T Consensus 355 ~~Q~~------Av~~i~~s~~~~il~G~aGTGKTtll-~~i~~~~~~--~g~~V~~~ApTg~Aa~~L~----~~~----g 417 (744)
T TIGR02768 355 EEQYE------AVRHVTGSGDIAVVVGRAGTGKSTML-KAAREAWEA--AGYRVIGAALSGKAAEGLQ----AES----G 417 (744)
T ss_pred HHHHH------HHHHHhcCCCEEEEEecCCCCHHHHH-HHHHHHHHh--CCCeEEEEeCcHHHHHHHH----hcc----C
Confidence 33888 88777764 56799999999999653 334333332 2457999999986554432 111 1
Q ss_pred ceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh-CCCC
Q psy1548 210 IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS-SPHT 288 (448)
Q Consensus 210 ~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~-l~~~ 288 (448)
+.. .|..+++.-.......+...++|||||+-++... .+ ..++.. ....
T Consensus 418 ~~a-------------------------~Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~~-~~----~~Ll~~~~~~~ 467 (744)
T TIGR02768 418 IES-------------------------RTLASLEYAWANGRDLLSDKDVLVIDEAGMVGSR-QM----ARVLKEAEEAG 467 (744)
T ss_pred Cce-------------------------eeHHHHHhhhccCcccCCCCcEEEEECcccCCHH-HH----HHHHHHHHhcC
Confidence 111 1222221111222233567789999999966443 33 334442 2356
Q ss_pred CeEEEEe
Q psy1548 289 KQVMMFS 295 (448)
Q Consensus 289 ~q~i~~S 295 (448)
.++|++.
T Consensus 468 ~kliLVG 474 (744)
T TIGR02768 468 AKVVLVG 474 (744)
T ss_pred CEEEEEC
Confidence 6777766
No 261
>PRK06921 hypothetical protein; Provisional
Probab=95.68 E-value=0.051 Score=51.61 Aligned_cols=45 Identities=24% Similarity=0.124 Sum_probs=27.5
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
.+.++++.|++|+|||... .++...+... .+..++++. ..++..+
T Consensus 116 ~~~~l~l~G~~G~GKThLa-~aia~~l~~~-~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLL-TAAANELMRK-KGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CCCeEEEECCCCCcHHHHH-HHHHHHHhhh-cCceEEEEE-HHHHHHH
Confidence 3678999999999999653 3444444332 134556554 4444444
No 262
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.66 E-value=0.039 Score=51.97 Aligned_cols=51 Identities=16% Similarity=0.303 Sum_probs=33.9
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
..++++++.||+|+|||..+. ++.+.+. ..+ ..++.+++.+|+.++...+.
T Consensus 103 ~~~~nl~l~G~~G~GKThLa~-Ai~~~l~--~~g-~sv~f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 103 ERGENLVLLGPPGVGKTHLAI-AIGNELL--KAG-ISVLFITAPDLLSKLKAAFD 153 (254)
T ss_pred ccCCcEEEECCCCCcHHHHHH-HHHHHHH--HcC-CeEEEEEHHHHHHHHHHHHh
Confidence 378999999999999997643 3444444 223 34555677778777554433
No 263
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=95.62 E-value=0.14 Score=52.48 Aligned_cols=38 Identities=13% Similarity=0.250 Sum_probs=25.0
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
..+++.||+|+|||... -++.+.+.....+.+++++..
T Consensus 131 n~l~lyG~~G~GKTHLl-~ai~~~l~~~~~~~~v~yi~~ 168 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLL-QSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_pred CeEEEEcCCCCcHHHHH-HHHHHHHHHhCCCCeEEEEEH
Confidence 46899999999999653 344454444333446776653
No 264
>PRK08727 hypothetical protein; Validated
Probab=95.53 E-value=0.058 Score=50.16 Aligned_cols=35 Identities=17% Similarity=0.080 Sum_probs=21.0
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
..+++.||+|+|||-... ++...+... +.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~-a~~~~~~~~--~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLAL-ALCAAAEQA--GRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHH-HHHHHHHHc--CCcEEEEe
Confidence 358999999999995433 333333222 33566654
No 265
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=95.53 E-value=0.061 Score=59.85 Aligned_cols=118 Identities=13% Similarity=0.060 Sum_probs=69.1
Q ss_pred hhhhccccccceeeeeCcc-eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCce
Q psy1548 133 LHRVARAGRFGTKAVLGMD-ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~-vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 211 (448)
|.+ ++..++.+++ ++++|+.|+|||.+ +-++...+.. .+.+++.++||-.-+..+. . .. ++.
T Consensus 351 Qr~------Av~~il~s~~v~vv~G~AGTGKTT~-l~~~~~~~e~--~G~~V~~~ApTGkAA~~L~----e---~t-Gi~ 413 (988)
T PRK13889 351 QAD------ALAHVTDGRDLGVVVGYAGTGKSAM-LGVAREAWEA--AGYEVRGAALSGIAAENLE----G---GS-GIA 413 (988)
T ss_pred HHH------HHHHHhcCCCeEEEEeCCCCCHHHH-HHHHHHHHHH--cCCeEEEecCcHHHHHHHh----h---cc-Ccc
Confidence 888 8888887654 68999999999976 3344443332 3557999999986554332 1 11 111
Q ss_pred EEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCe
Q psy1548 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQ 290 (448)
Q Consensus 212 v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q 290 (448)
. .|..+++.-...+...+...++|||||+-++... .+..+++.. +...+
T Consensus 414 a-------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~~-----~m~~LL~~a~~~gar 463 (988)
T PRK13889 414 S-------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGTR-----QLERVLSHAADAGAK 463 (988)
T ss_pred h-------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCHH-----HHHHHHHhhhhCCCE
Confidence 0 1222222111122233556689999999955433 334455433 45677
Q ss_pred EEEEecc
Q psy1548 291 VMMFSAT 297 (448)
Q Consensus 291 ~i~~SAT 297 (448)
+|++.=+
T Consensus 464 vVLVGD~ 470 (988)
T PRK13889 464 VVLVGDP 470 (988)
T ss_pred EEEECCH
Confidence 8777655
No 266
>KOG0347|consensus
Probab=95.51 E-value=0.0087 Score=60.50 Aligned_cols=58 Identities=31% Similarity=0.576 Sum_probs=48.5
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
.-|++||+.+.||+|.+.|..|+||.-|...+-|=+.-||+.| +-..|-.+++++|--
T Consensus 514 ~~VLiaTDVAARGLDIp~V~HVIHYqVPrtseiYVHRSGRTAR---A~~~Gvsvml~~P~e 571 (731)
T KOG0347|consen 514 SGVLIATDVAARGLDIPGVQHVIHYQVPRTSEIYVHRSGRTAR---ANSEGVSVMLCGPQE 571 (731)
T ss_pred CeEEEeehhhhccCCCCCcceEEEeecCCccceeEeccccccc---ccCCCeEEEEeChHH
Confidence 3799999999999999999999999999999777777666555 555677888888865
No 267
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.50 E-value=0.056 Score=55.19 Aligned_cols=19 Identities=21% Similarity=0.343 Sum_probs=15.3
Q ss_pred cceeeeccCCChhHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l 168 (448)
+.+|+.||.|+|||.++.+
T Consensus 41 ha~Lf~GP~GtGKTTlAri 59 (484)
T PRK14956 41 HAYIFFGPRGVGKTTIARI 59 (484)
T ss_pred eEEEEECCCCCCHHHHHHH
Confidence 3479999999999977543
No 268
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=95.50 E-value=0.09 Score=53.75 Aligned_cols=50 Identities=8% Similarity=0.207 Sum_probs=28.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEEeccCCccHHH
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMFSATLSKEIRP 304 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~SAT~~~~~~~ 304 (448)
.+.++++|||+|.+.........+..++..+ ....|+++.|.+.|..+..
T Consensus 201 ~~~dvLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~ 251 (445)
T PRK12422 201 RNVDALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKA 251 (445)
T ss_pred ccCCEEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhh
Confidence 3567899999998754312233333444332 2356666666555555443
No 269
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.48 E-value=0.21 Score=53.87 Aligned_cols=131 Identities=10% Similarity=0.162 Sum_probs=66.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec-c-HHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH-T-RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P-t-~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
|+-+.+.||||+|||.+...-+...... .++.++.++.- + +.=+ .++++.+...+ ++.+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~-~G~kkV~lit~Dt~RigA---~eQL~~~a~~~-gvpv-------------- 245 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAR-EGADQLALLTTDSFRIGA---LEQLRIYGRIL-GVPV-------------- 245 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHH-cCCCeEEEecCcccchHH---HHHHHHHHHhC-CCCc--------------
Confidence 5668899999999997754333222112 22224444432 2 2112 23445554443 3322
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc-cHHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK-EIRPV 305 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~-~~~~~ 305 (448)
.++.+|..+...+.. +.+.++++||=+=+..........+..+.....+...++.+|||... .+.+.
T Consensus 246 --------~~~~~~~~l~~al~~----~~~~D~VLIDTAGRs~~d~~l~eel~~l~~~~~p~e~~LVLsAt~~~~~l~~i 313 (767)
T PRK14723 246 --------HAVKDAADLRFALAA----LGDKHLVLIDTVGMSQRDRNVSEQIAMLCGVGRPVRRLLLLNAASHGDTLNEV 313 (767)
T ss_pred --------cccCCHHHHHHHHHH----hcCCCEEEEeCCCCCccCHHHHHHHHHHhccCCCCeEEEEECCCCcHHHHHHH
Confidence 223356655555542 23446777877765433212333344444344445567788888654 34455
Q ss_pred HHHhc
Q psy1548 306 CKKFM 310 (448)
Q Consensus 306 ~~~~l 310 (448)
++.|-
T Consensus 314 ~~~f~ 318 (767)
T PRK14723 314 VHAYR 318 (767)
T ss_pred HHHHh
Confidence 55553
No 270
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=95.45 E-value=0.044 Score=63.26 Aligned_cols=97 Identities=21% Similarity=0.141 Sum_probs=63.7
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~ 179 (448)
++.|||+...+|||.++++.|+++..|..+..|.|.+||||+. ..|....+..|+. -+-+.....++..+..+.-
T Consensus 329 rvLVATssLELGIDIg~VDlVIq~gsP~sVas~LQRiGRAGR~----~gg~s~gli~p~~-r~dlle~~~~ve~~l~g~i 403 (1490)
T PRK09751 329 RCVVATSSLELGIDMGAVDLVIQVATPLSVASGLQRIGRAGHQ----VGGVSKGLFFPRT-RRDLVDSAVIVECMFAGRL 403 (1490)
T ss_pred eEEEeCcHHHccCCcccCCEEEEeCCCCCHHHHHHHhCCCCCC----CCCccEEEEEeCc-HHHHHhhHHHHHHHhcCCC
Confidence 8999999999999999999999999999999999999999984 2233333334443 2222222333444433333
Q ss_pred CeEEEEeeccHHHHHHHHHHHH
Q psy1548 180 NVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 180 ~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
......-.|.--|++|+...+.
T Consensus 404 E~~~~p~nplDVLaqqiva~a~ 425 (1490)
T PRK09751 404 ENLTPPHNPLDVLAQQTVAAAA 425 (1490)
T ss_pred CccCCCCChHHHHHHHHHHHHh
Confidence 3323333455556888766544
No 271
>KOG0338|consensus
Probab=95.45 E-value=0.012 Score=59.11 Aligned_cols=56 Identities=41% Similarity=0.698 Sum_probs=45.4
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
-.|+|||++++||+|...|.-|+||..|..++.|-+..||+.|+. ..|++|-+++.
T Consensus 477 idvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTARAG---RaGrsVtlvgE 532 (691)
T KOG0338|consen 477 IDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTARAG---RAGRSVTLVGE 532 (691)
T ss_pred CCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhhcc---cCcceEEEecc
Confidence 378999999999999999999999999999999999888866533 33555554443
No 272
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=95.44 E-value=0.1 Score=49.36 Aligned_cols=18 Identities=28% Similarity=0.512 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
..++++.||+|+|||..+
T Consensus 42 ~~~vll~GppGtGKTtlA 59 (261)
T TIGR02881 42 VLHMIFKGNPGTGKTTVA 59 (261)
T ss_pred cceEEEEcCCCCCHHHHH
Confidence 468999999999999765
No 273
>PRK12377 putative replication protein; Provisional
Probab=95.42 E-value=0.085 Score=49.44 Aligned_cols=45 Identities=16% Similarity=0.222 Sum_probs=27.4
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
..++++.||+|+|||... .++.+.+... +..+ +..+..+|..++.
T Consensus 101 ~~~l~l~G~~GtGKThLa-~AIa~~l~~~--g~~v-~~i~~~~l~~~l~ 145 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLA-AAIGNRLLAK--GRSV-IVVTVPDVMSRLH 145 (248)
T ss_pred CCeEEEECCCCCCHHHHH-HHHHHHHHHc--CCCe-EEEEHHHHHHHHH
Confidence 368999999999999553 3444444332 3234 4445556665543
No 274
>PRK08116 hypothetical protein; Validated
Probab=95.40 E-value=0.087 Score=50.10 Aligned_cols=43 Identities=23% Similarity=0.268 Sum_probs=26.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 196 (448)
..+++.|++|+|||..+ .++.+.+... +..++++ +..++...+
T Consensus 115 ~gl~l~G~~GtGKThLa-~aia~~l~~~--~~~v~~~-~~~~ll~~i 157 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLA-ACIANELIEK--GVPVIFV-NFPQLLNRI 157 (268)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHHc--CCeEEEE-EHHHHHHHH
Confidence 45999999999999664 3455555443 3344444 455555543
No 275
>PRK13767 ATP-dependent helicase; Provisional
Probab=95.38 E-value=0.026 Score=62.73 Aligned_cols=43 Identities=26% Similarity=0.518 Sum_probs=41.3
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
++.|||+.+++|||.++++.|+++..|..+..|-|.+|||||.
T Consensus 342 ~vLVaTs~Le~GIDip~Vd~VI~~~~P~sv~~ylQRiGRaGR~ 384 (876)
T PRK13767 342 KVVVSSTSLELGIDIGYIDLVVLLGSPKSVSRLLQRIGRAGHR 384 (876)
T ss_pred eEEEECChHHhcCCCCCCcEEEEeCCCCCHHHHHHhcccCCCC
Confidence 8999999999999999999999999999999999999999984
No 276
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=95.38 E-value=0.096 Score=48.20 Aligned_cols=20 Identities=20% Similarity=0.169 Sum_probs=16.5
Q ss_pred eCcceeeeccCCChhHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~ 167 (448)
.+.++++.||+|+|||....
T Consensus 37 ~~~~lll~G~~G~GKT~la~ 56 (226)
T TIGR03420 37 GDRFLYLWGESGSGKSHLLQ 56 (226)
T ss_pred CCCeEEEECCCCCCHHHHHH
Confidence 35789999999999996643
No 277
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.38 E-value=0.17 Score=51.42 Aligned_cols=132 Identities=12% Similarity=0.130 Sum_probs=65.0
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
...++++|++|+|||.+..--+. .+... +.++++++ +.+.-+ .++++.++... ++.+.......
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~-~L~~~--g~kV~lV~~D~~R~aa---~eQL~~la~~~-gvp~~~~~~~~------- 160 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLAR-YFKKK--GLKVGLVAADTYRPAA---YDQLKQLAEKI-GVPFYGDPDNK------- 160 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHH-HHHHc--CCeEEEecCCCCCHHH---HHHHHHHHHHc-CCcEEecCCcc-------
Confidence 45688999999999977543332 33322 23455444 223322 23344444433 33321111000
Q ss_pred HHhcCCCcEEEEcHHH-HHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHH
Q psy1548 227 YLKTHNPQIVVGTPGR-ILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~-l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~ 305 (448)
.|.. +.+.+.. ....+++|+|.+-+..........+..+.....+..-++.++|+...+..+.
T Consensus 161 ------------d~~~i~~~al~~----~~~~DvVIIDTAGr~~~d~~lm~El~~l~~~~~pdevlLVvda~~gq~av~~ 224 (437)
T PRK00771 161 ------------DAVEIAKEGLEK----FKKADVIIVDTAGRHALEEDLIEEMKEIKEAVKPDEVLLVIDATIGQQAKNQ 224 (437)
T ss_pred ------------CHHHHHHHHHHH----hhcCCEEEEECCCcccchHHHHHHHHHHHHHhcccceeEEEeccccHHHHHH
Confidence 1111 1222222 1112678888884332221445555566555555556777777776655555
Q ss_pred HHHhc
Q psy1548 306 CKKFM 310 (448)
Q Consensus 306 ~~~~l 310 (448)
++.|.
T Consensus 225 a~~F~ 229 (437)
T PRK00771 225 AKAFH 229 (437)
T ss_pred HHHHH
Confidence 55543
No 278
>KOG0340|consensus
Probab=95.35 E-value=0.016 Score=55.65 Aligned_cols=43 Identities=49% Similarity=0.852 Sum_probs=40.1
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
-+|.+||+.++||+|.|.|..|+||+.|...++|=+..||+.|
T Consensus 305 ~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRtAR 347 (442)
T KOG0340|consen 305 ARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRTAR 347 (442)
T ss_pred ccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcchhc
Confidence 4899999999999999999999999999999999999888655
No 279
>KOG0332|consensus
Probab=95.33 E-value=0.017 Score=55.77 Aligned_cols=72 Identities=33% Similarity=0.608 Sum_probs=51.2
Q ss_pred hccCceeeeccCCcccCCCCHHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCc------hhhhhhhccccc
Q psy1548 69 EVKGAYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDS------DTYLHRVARAGR 141 (448)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~------~~yQ~~~~~~~~ 141 (448)
...|..++.-+.+...-.. ..++....+ ..+|+|+||...||||...|..|+||+.|... +.|=+.+||+||
T Consensus 351 ~~~Gh~V~~l~G~l~~~~R-~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGR 429 (477)
T KOG0332|consen 351 RAEGHQVSLLHGDLTVEQR-AAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGR 429 (477)
T ss_pred HhcCceeEEeeccchhHHH-HHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHhccccc
Confidence 3446666665554443322 233333333 34999999999999999999999999999764 667788888887
No 280
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=95.33 E-value=0.012 Score=63.69 Aligned_cols=46 Identities=39% Similarity=0.467 Sum_probs=42.5
Q ss_pred ccceeEeeccccCCccc---ccce-----eEeeccCCCCchhhhhhhccccccc
Q psy1548 98 CWRILVATNLFGRGMDI---ERVN-----IVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~---~~~~-----~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.|.|+|||+++|||+|+ ++|. .|+++..|...+.|.+..||+||..
T Consensus 476 ~g~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G 529 (790)
T PRK09200 476 KGAVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQG 529 (790)
T ss_pred CCeEEEEccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCC
Confidence 46999999999999999 6898 9999999999999999999999944
No 281
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=95.26 E-value=0.16 Score=49.44 Aligned_cols=40 Identities=20% Similarity=0.409 Sum_probs=28.0
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
...+++++||||.|.. +....+...+..-+.+..+++.+-
T Consensus 108 ~~~kviiidead~mt~--~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 108 GGYKVVIIDEADKLTE--DAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred CCceEEEeCcHHHHhH--HHHHHHHHHhccCCCCeEEEEEcC
Confidence 6788999999998877 455555666666566666665543
No 282
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.24 E-value=0.027 Score=60.24 Aligned_cols=65 Identities=17% Similarity=0.082 Sum_probs=48.4
Q ss_pred chhhhhhhccccccceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 129 SDTYLHRVARAGRFGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
+...|.. ++..++.. ..++|+||+|+|||.+..-.+.+.+. .+.++|+++||..-+.++.+.+..
T Consensus 158 ln~~Q~~------Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~---~g~~VLv~a~sn~Avd~l~e~l~~ 223 (637)
T TIGR00376 158 LNESQKE------AVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK---RGLRVLVTAPSNIAVDNLLERLAL 223 (637)
T ss_pred CCHHHHH------HHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH---cCCCEEEEcCcHHHHHHHHHHHHh
Confidence 4556999 88777765 67889999999999664433333332 234899999999998888777765
No 283
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.17 E-value=0.043 Score=54.67 Aligned_cols=46 Identities=26% Similarity=0.364 Sum_probs=31.9
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
..|.++.+.|+-|+|||..+ -.+.+.+.. .+..+++++||-.-|..
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~-~~i~~~~~~--~~~~~~~~a~tg~AA~~ 65 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLI-KAIIDYLRS--RGKKVLVTAPTGIAAFN 65 (364)
T ss_pred cCCcEEEEEcCCCCChhHHH-HHHHHHhcc--ccceEEEecchHHHHHh
Confidence 56889999999999999764 223333322 34578889999765443
No 284
>PRK09183 transposase/IS protein; Provisional
Probab=95.16 E-value=0.13 Score=48.72 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=18.6
Q ss_pred eeeCcceeeeccCCChhHHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~ 167 (448)
+..|.++++.||+|+|||....
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~ 120 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAI 120 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHH
Confidence 5678999999999999996543
No 285
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=95.13 E-value=0.088 Score=48.61 Aligned_cols=139 Identities=14% Similarity=0.140 Sum_probs=69.3
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC----CceEEEEEcCcc
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS----NIKVGVFFGGLP 220 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~----~~~v~~~~g~~~ 220 (448)
-+..|..+++.|++|+|||...+--+.+.+... +-++++++- .+-..++.+.++.+.-... .-....+... +
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~--ge~vlyvs~-ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~-~ 90 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF--GEKVLYVSF-EEPPEELIENMKSFGWDLEEYEDSGKLKIIDAF-P 90 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH--T--EEEEES-SS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESS-G
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc--CCcEEEEEe-cCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecc-c
Confidence 455678999999999999966544444444431 225777773 3344666666666542110 0011111111 0
Q ss_pred cHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHh---hhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 221 IQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE---QLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 221 ~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~---~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
..... . -..++.+...+....- -...+.+|||-...+.. ...++..+..+...+.....+.++++.
T Consensus 91 ~~~~~--------~--~~~~~~l~~~i~~~i~-~~~~~~vVIDsls~l~~~~~~~~~r~~l~~l~~~l~~~~~t~llt~~ 159 (226)
T PF06745_consen 91 ERIGW--------S--PNDLEELLSKIREAIE-ELKPDRVVIDSLSALLLYDDPEELRRFLRALIKFLKSRGVTTLLTSE 159 (226)
T ss_dssp GGST---------T--SCCHHHHHHHHHHHHH-HHTSSEEEEETHHHHTTSSSGGGHHHHHHHHHHHHHHTTEEEEEEEE
T ss_pred ccccc--------c--ccCHHHHHHHHHHHHH-hcCCCEEEEECHHHHhhcCCHHHHHHHHHHHHHHHHHCCCEEEEEEc
Confidence 00000 0 1133333333322100 11227899999998721 124566677676666555556666666
Q ss_pred C
Q psy1548 298 L 298 (448)
Q Consensus 298 ~ 298 (448)
.
T Consensus 160 ~ 160 (226)
T PF06745_consen 160 M 160 (226)
T ss_dssp E
T ss_pred c
Confidence 3
No 286
>PF13173 AAA_14: AAA domain
Probab=95.13 E-value=0.25 Score=41.07 Aligned_cols=38 Identities=8% Similarity=0.150 Sum_probs=25.0
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
.-.+++|||+|.+.+| ...+..+.... ++.++++.+..
T Consensus 61 ~~~~i~iDEiq~~~~~---~~~lk~l~d~~-~~~~ii~tgS~ 98 (128)
T PF13173_consen 61 GKKYIFIDEIQYLPDW---EDALKFLVDNG-PNIKIILTGSS 98 (128)
T ss_pred CCcEEEEehhhhhccH---HHHHHHHHHhc-cCceEEEEccc
Confidence 4457999999988554 55555555544 45677665554
No 287
>CHL00181 cbbX CbbX; Provisional
Probab=95.07 E-value=0.19 Score=48.34 Aligned_cols=20 Identities=30% Similarity=0.499 Sum_probs=17.0
Q ss_pred eCcceeeeccCCChhHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~ 167 (448)
.|.++++.||+|+|||.++-
T Consensus 58 ~~~~ill~G~pGtGKT~lAr 77 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVAL 77 (287)
T ss_pred CCceEEEECCCCCCHHHHHH
Confidence 46789999999999997754
No 288
>KOG0344|consensus
Probab=95.03 E-value=0.022 Score=58.11 Aligned_cols=58 Identities=40% Similarity=0.785 Sum_probs=46.2
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
-|++||++.+||||+.+++.|+||+.|...-.|=+.+||.||+.+. |+-+.+-..+++
T Consensus 440 wvLicTdll~RGiDf~gvn~VInyD~p~s~~syihrIGRtgRag~~---g~Aitfytd~d~ 497 (593)
T KOG0344|consen 440 WVLICTDLLARGIDFKGVNLVINYDFPQSDLSYIHRIGRTGRAGRS---GKAITFYTDQDM 497 (593)
T ss_pred eEEEehhhhhccccccCcceEEecCCCchhHHHHHHhhccCCCCCC---cceEEEeccccc
Confidence 5679999999999999999999999999997788888888885544 444444444443
No 289
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.02 E-value=0.16 Score=49.37 Aligned_cols=40 Identities=15% Similarity=0.230 Sum_probs=27.6
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..+++||||+|.+... .....+..++...+..+++|+.|.
T Consensus 100 ~~~vliiDe~d~l~~~-~~~~~L~~~le~~~~~~~~Ilt~n 139 (316)
T PHA02544 100 GGKVIIIDEFDRLGLA-DAQRHLRSFMEAYSKNCSFIITAN 139 (316)
T ss_pred CCeEEEEECcccccCH-HHHHHHHHHHHhcCCCceEEEEcC
Confidence 4578999999988333 445566666777777777776543
No 290
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.97 E-value=0.34 Score=48.89 Aligned_cols=135 Identities=11% Similarity=0.177 Sum_probs=64.6
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
..|.-+.+.||||+|||.....-+-..+.........++.+.+.-.. ..+++..++..+ ++.+...
T Consensus 189 ~~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rig--alEQL~~~a~il-Gvp~~~v----------- 254 (420)
T PRK14721 189 EQGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIG--GHEQLRIYGKLL-GVSVRSI----------- 254 (420)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchh--HHHHHHHHHHHc-CCceecC-----------
Confidence 35677899999999999775433222222212122345555553332 222344444443 4433222
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCcc-HHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKE-IRPV 305 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~-~~~~ 305 (448)
.++..+...+.. +.+.+.+.+|.+=+..........+..+.....+...++.+|||.... +.+.
T Consensus 255 -----------~~~~dl~~al~~----l~~~d~VLIDTaGrsqrd~~~~~~l~~l~~~~~~~~~~LVl~at~~~~~~~~~ 319 (420)
T PRK14721 255 -----------KDIADLQLMLHE----LRGKHMVLIDTVGMSQRDQMLAEQIAMLSQCGTQVKHLLLLNATSSGDTLDEV 319 (420)
T ss_pred -----------CCHHHHHHHHHH----hcCCCEEEecCCCCCcchHHHHHHHHHHhccCCCceEEEEEcCCCCHHHHHHH
Confidence 223333222221 344566777775322111022233333322223345678899997544 5555
Q ss_pred HHHhc
Q psy1548 306 CKKFM 310 (448)
Q Consensus 306 ~~~~l 310 (448)
...|-
T Consensus 320 ~~~f~ 324 (420)
T PRK14721 320 ISAYQ 324 (420)
T ss_pred HHHhc
Confidence 65554
No 291
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=94.94 E-value=0.14 Score=52.66 Aligned_cols=152 Identities=14% Similarity=0.067 Sum_probs=87.1
Q ss_pred cCCCCchhhhhhhccccccceeeee------C----cceeeeccCCChhHHHHH-HHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVL------G----MDILCQAKSGMGKTAVFV-LATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~------g----~~vli~apTGsGKT~~~~-l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
..|.++.+||+- .+-.++- | +-.+|..|-+-|||.... +.....+.....+....|++|+.+-
T Consensus 57 ~~p~~l~PwQkF------iia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~q 130 (546)
T COG4626 57 GFPESLEPWQKF------IVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQ 130 (546)
T ss_pred CCccccchHHHH------HHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHH
Confidence 468888999999 5544441 1 467999999999996654 3333333333566789999999999
Q ss_pred HHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC--CCCcCCCeeEEEecchhHHHh
Q psy1548 193 AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN--KKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 193 ~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~--~~~~~~~i~~lViDEah~l~~ 270 (448)
+.+....++......++++.. .........|...--......+.. +..+-.+..+.|+||.|....
T Consensus 131 a~~~F~~ar~mv~~~~~l~~~------------~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~ 198 (546)
T COG4626 131 AANSFNPARDMVKRDDDLRDL------------CNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGK 198 (546)
T ss_pred HHHhhHHHHHHHHhCcchhhh------------hccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcC
Confidence 999888888766554211110 000111011222111111222222 334445567899999997655
Q ss_pred hhhhHHHHHHHHHhC--CCCCeEEEEec
Q psy1548 271 QLEMRRDVQEIFRSS--PHTKQVMMFSA 296 (448)
Q Consensus 271 ~~~~~~~~~~i~~~l--~~~~q~i~~SA 296 (448)
. + ..+..+..-+ .++.+++..|.
T Consensus 199 ~-~--~~~~~~~~g~~ar~~~l~~~ITT 223 (546)
T COG4626 199 Q-E--DMYSEAKGGLGARPEGLVVYITT 223 (546)
T ss_pred H-H--HHHHHHHhhhccCcCceEEEEec
Confidence 3 2 4444443333 24566776665
No 292
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.93 E-value=0.3 Score=46.88 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.5
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.++++.||+|+|||.++
T Consensus 57 ~~~~vll~G~pGTGKT~lA 75 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVA 75 (284)
T ss_pred CCceEEEEcCCCCCHHHHH
Confidence 4568999999999999765
No 293
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.90 E-value=0.14 Score=56.28 Aligned_cols=39 Identities=23% Similarity=0.304 Sum_probs=28.5
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
.+.+++||||+|+|... -...+.++++..+..+.+|+.+
T Consensus 119 ~~~KV~IIDEad~lt~~--a~NaLLK~LEEpP~~~~fIl~t 157 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQ--GFNALLKIVEEPPEHLKFIFAT 157 (824)
T ss_pred CCceEEEEechhhcCHH--HHHHHHHHHhCCCCCeEEEEEe
Confidence 56789999999998763 4445666777777777777654
No 294
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=94.90 E-value=0.022 Score=60.88 Aligned_cols=52 Identities=27% Similarity=0.264 Sum_probs=44.5
Q ss_pred HHHHhhccceeEeeccccCCccccc-------ceeEeeccCCCCchhhhhhhccccccc
Q psy1548 92 LRAIVDCWRILVATNLFGRGMDIER-------VNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~~d~~~-------~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
...-...+.|.||||++|||.|+.. ...|+++..|...+.|.|..||+||..
T Consensus 447 i~~ag~~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG 505 (745)
T TIGR00963 447 IAQAGRKGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQG 505 (745)
T ss_pred HHhcCCCceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCC
Confidence 3333455799999999999999998 459999999999999999999999944
No 295
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=94.89 E-value=0.13 Score=50.43 Aligned_cols=40 Identities=15% Similarity=0.326 Sum_probs=26.6
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
...+++|+||+|.+.. .....+..++...+...++|+.+.
T Consensus 124 ~~~~vlilDe~~~l~~--~~~~~L~~~le~~~~~~~~Il~~~ 163 (337)
T PRK12402 124 ADYKTILLDNAEALRE--DAQQALRRIMEQYSRTCRFIIATR 163 (337)
T ss_pred CCCcEEEEeCcccCCH--HHHHHHHHHHHhccCCCeEEEEeC
Confidence 4457899999997754 334456666666666676666443
No 296
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.88 E-value=0.49 Score=49.00 Aligned_cols=133 Identities=14% Similarity=0.176 Sum_probs=64.8
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 222 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 222 (448)
.+..|+.+.+.||||+|||.....-+...... ..+.++.++. +.+.-+.+ +++.+...+ ++.+..
T Consensus 346 ~l~~G~vIaLVGPtGvGKTTtaakLAa~la~~-~~gkkVaLIdtDtyRigA~E---QLk~ya~iL-gv~v~~-------- 412 (559)
T PRK12727 346 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQ-HAPRDVALVTTDTQRVGGRE---QLHSYGRQL-GIAVHE-------- 412 (559)
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHHHHHHh-cCCCceEEEecccccccHHH---HHHHhhccc-CceeEe--------
Confidence 34457889999999999997653322222222 1122344443 23433322 334433332 222211
Q ss_pred HhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc-c
Q psy1548 223 KDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK-E 301 (448)
Q Consensus 223 ~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~-~ 301 (448)
+.+++.+...+.. +.+.++|+||.+-...........+..+... .....+++++++... +
T Consensus 413 --------------a~d~~~L~~aL~~----l~~~DLVLIDTaG~s~~D~~l~eeL~~L~aa-~~~a~lLVLpAtss~~D 473 (559)
T PRK12727 413 --------------ADSAESLLDLLER----LRDYKLVLIDTAGMGQRDRALAAQLNWLRAA-RQVTSLLVLPANAHFSD 473 (559)
T ss_pred --------------cCcHHHHHHHHHH----hccCCEEEecCCCcchhhHHHHHHHHHHHHh-hcCCcEEEEECCCChhH
Confidence 1133444444442 3456789999987543221222233333222 233456777887643 4
Q ss_pred HHHHHHHh
Q psy1548 302 IRPVCKKF 309 (448)
Q Consensus 302 ~~~~~~~~ 309 (448)
+.+.++.|
T Consensus 474 l~eii~~f 481 (559)
T PRK12727 474 LDEVVRRF 481 (559)
T ss_pred HHHHHHHH
Confidence 55555554
No 297
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=94.79 E-value=0.18 Score=53.16 Aligned_cols=134 Identities=13% Similarity=0.103 Sum_probs=79.8
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC-CCceEEEEEcCcccHHhHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM-SNIKVGVFFGGLPIQKDEEY 227 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~v~~~~g~~~~~~~~~~ 227 (448)
.+-.++..|--.|||+... +++..+...-.+.++++++|.+..++.+++.+....... +.-.+....| ... ...
T Consensus 254 qk~tVflVPRR~GKTwivv-~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkG-e~I---~i~ 328 (738)
T PHA03368 254 QRATVFLVPRRHGKTWFLV-PLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKG-ETI---SFS 328 (738)
T ss_pred ccceEEEecccCCchhhHH-HHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecC-cEE---EEE
Confidence 3567899999999998655 665554444447799999999999999998888765431 1111222222 111 001
Q ss_pred HhcCC-CcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 228 LKTHN-PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 228 l~~~~-~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
+.++. ..|.++|. -..+...-..++++|+|||+-+-+. .+...+ -.+ ...+.++|.+|.|
T Consensus 329 f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l--~~~n~k~I~ISS~ 389 (738)
T PHA03368 329 FPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFL--NQTNCKIIFVSST 389 (738)
T ss_pred ecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHH--hccCccEEEEecC
Confidence 11221 24555432 1123344457889999999977553 222222 222 2247788999988
No 298
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.77 E-value=0.19 Score=54.99 Aligned_cols=43 Identities=12% Similarity=0.248 Sum_probs=27.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
...+++||||+|+|.. .....+.+.+..-|..+.+|+. +|-+.
T Consensus 118 gk~KViIIDEAh~LT~--eAqNALLKtLEEPP~~vrFILa-TTe~~ 160 (944)
T PRK14949 118 GRFKVYLIDEVHMLSR--SSFNALLKTLEEPPEHVKFLLA-TTDPQ 160 (944)
T ss_pred CCcEEEEEechHhcCH--HHHHHHHHHHhccCCCeEEEEE-CCCch
Confidence 4568899999998865 3344455566665666666664 44333
No 299
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.77 E-value=0.16 Score=54.55 Aligned_cols=40 Identities=10% Similarity=0.293 Sum_probs=26.4
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
.+.+++||||+|.|... . ...+.+++..-+.+..+|+.|.
T Consensus 118 gr~KVIIIDEah~LT~~-A-~NALLKtLEEPP~~v~FILaTt 157 (830)
T PRK07003 118 ARFKVYMIDEVHMLTNH-A-FNAMLKTLEEPPPHVKFILATT 157 (830)
T ss_pred CCceEEEEeChhhCCHH-H-HHHHHHHHHhcCCCeEEEEEEC
Confidence 45689999999988664 3 3344455666666666666543
No 300
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=94.75 E-value=0.067 Score=58.42 Aligned_cols=67 Identities=13% Similarity=0.167 Sum_probs=58.2
Q ss_pred CcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 233 PQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
..|+++||..+..-+..+.+++..+..+|+||||++.+. .....+..+++...+..-+.+|||....
T Consensus 8 ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~-~~eaFI~rlyr~~n~~gfIkafSdsP~~ 74 (814)
T TIGR00596 8 GGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIES-SQEAFILRLYRQKNKTGFIKAFSDNPEA 74 (814)
T ss_pred CCEEEEechhhHhHHhcCCCCHHHccEEEEeeccccccc-ccHHHHHHHHHHhCCCcceEEecCCCcc
Confidence 469999999999888889999999999999999999887 6777777888777777789999999654
No 301
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=94.75 E-value=0.41 Score=39.48 Aligned_cols=15 Identities=40% Similarity=0.587 Sum_probs=13.0
Q ss_pred eeeeccCCChhHHHH
Q psy1548 152 ILCQAKSGMGKTAVF 166 (448)
Q Consensus 152 vli~apTGsGKT~~~ 166 (448)
+++.||.|+|||...
T Consensus 1 ill~G~~G~GKT~l~ 15 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLA 15 (132)
T ss_dssp EEEESSTTSSHHHHH
T ss_pred CEEECcCCCCeeHHH
Confidence 589999999999764
No 302
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=94.75 E-value=0.11 Score=49.57 Aligned_cols=39 Identities=13% Similarity=0.222 Sum_probs=23.9
Q ss_pred CCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCC--eEEEE
Q psy1548 255 SLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTK--QVMMF 294 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~--q~i~~ 294 (448)
-.++++||||+|.++.. .. ...+...++.+.... .++++
T Consensus 144 ~~vrmLIIDE~H~lLaG-s~~~qr~~Ln~LK~L~NeL~ipiV~v 186 (302)
T PF05621_consen 144 LGVRMLIIDEFHNLLAG-SYRKQREFLNALKFLGNELQIPIVGV 186 (302)
T ss_pred cCCcEEEeechHHHhcc-cHHHHHHHHHHHHHHhhccCCCeEEe
Confidence 46789999999998875 32 223334455554433 44544
No 303
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=94.74 E-value=0.17 Score=44.11 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=31.2
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccC
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~ 298 (448)
...+.+||||||.|.. .....+.+.+..-|.+..++++|...
T Consensus 101 ~~~KviiI~~ad~l~~--~a~NaLLK~LEepp~~~~fiL~t~~~ 142 (162)
T PF13177_consen 101 GKYKVIIIDEADKLTE--EAQNALLKTLEEPPENTYFILITNNP 142 (162)
T ss_dssp SSSEEEEEETGGGS-H--HHHHHHHHHHHSTTTTEEEEEEES-G
T ss_pred CCceEEEeehHhhhhH--HHHHHHHHHhcCCCCCEEEEEEECCh
Confidence 5688999999999877 46666777777777787777776554
No 304
>KOG0991|consensus
Probab=94.73 E-value=0.054 Score=49.36 Aligned_cols=44 Identities=20% Similarity=0.242 Sum_probs=31.0
Q ss_pred CcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 252 LNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 252 ~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
+...+.+.+|+||||.|.+ +.-..++..+....+.+++.+...+
T Consensus 109 lp~grhKIiILDEADSMT~--gAQQAlRRtMEiyS~ttRFalaCN~ 152 (333)
T KOG0991|consen 109 LPPGRHKIIILDEADSMTA--GAQQALRRTMEIYSNTTRFALACNQ 152 (333)
T ss_pred CCCCceeEEEeeccchhhh--HHHHHHHHHHHHHcccchhhhhhcc
Confidence 3457788999999999977 5666666666666666666554444
No 305
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.72 E-value=0.4 Score=45.50 Aligned_cols=131 Identities=17% Similarity=0.205 Sum_probs=69.0
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccH-HHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTR-ELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~-~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
+..+.+.+|+|+|||..+..-+... .. . +.++.++. +.+ ..+.|+ +.+.... ++.+
T Consensus 75 ~~~i~~~G~~g~GKTtl~~~l~~~l-~~-~-~~~v~~i~~D~~ri~~~~ql----~~~~~~~-~~~~------------- 133 (270)
T PRK06731 75 VQTIALIGPTGVGKTTTLAKMAWQF-HG-K-KKTVGFITTDHSRIGTVQQL----QDYVKTI-GFEV------------- 133 (270)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHH-HH-c-CCeEEEEecCCCCHHHHHHH----HHHhhhc-CceE-------------
Confidence 4678999999999998765433332 21 1 22344443 222 334443 3333222 2222
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC-ccHHH
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS-KEIRP 304 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~-~~~~~ 304 (448)
+...+|..+...+..- -...+.+++++|-+=+..........+..++....+..-++.+|||.. .+..+
T Consensus 134 ---------~~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d~~~ 203 (270)
T PRK06731 134 ---------IAVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKDMIE 203 (270)
T ss_pred ---------EecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHHHHH
Confidence 1113454444433210 011346789999986653221334445555555545445778999865 46777
Q ss_pred HHHHhc
Q psy1548 305 VCKKFM 310 (448)
Q Consensus 305 ~~~~~l 310 (448)
.++.|-
T Consensus 204 ~~~~f~ 209 (270)
T PRK06731 204 IITNFK 209 (270)
T ss_pred HHHHhC
Confidence 777764
No 306
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.62 E-value=0.22 Score=51.19 Aligned_cols=21 Identities=24% Similarity=0.218 Sum_probs=17.0
Q ss_pred eCcceeeeccCCChhHHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l 168 (448)
.|+-+.+.||||+|||.+...
T Consensus 255 ~g~Vi~LvGpnGvGKTTTiaK 275 (484)
T PRK06995 255 RGGVFALMGPTGVGKTTTTAK 275 (484)
T ss_pred CCcEEEEECCCCccHHHHHHH
Confidence 466788999999999987543
No 307
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=94.60 E-value=0.031 Score=41.88 Aligned_cols=44 Identities=41% Similarity=0.786 Sum_probs=40.2
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
...+.++|+..+.|+|.+.+..|+.+..|.....|+|.+||++|
T Consensus 37 ~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~~Q~~gR~~R 80 (82)
T smart00490 37 KIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASYIQRIGRAGR 80 (82)
T ss_pred CCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHHHHhhccccc
Confidence 34899999999999999999999999999999899999999877
No 308
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.57 E-value=0.36 Score=46.85 Aligned_cols=39 Identities=13% Similarity=0.288 Sum_probs=25.9
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..+++++||+|.+... ....+..++...+....+|+.+.
T Consensus 102 ~~~vviiDe~~~l~~~--~~~~L~~~le~~~~~~~lIl~~~ 140 (319)
T PRK00440 102 PFKIIFLDEADNLTSD--AQQALRRTMEMYSQNTRFILSCN 140 (319)
T ss_pred CceEEEEeCcccCCHH--HHHHHHHHHhcCCCCCeEEEEeC
Confidence 4578999999987553 33455666666666666666543
No 309
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.56 E-value=0.39 Score=52.38 Aligned_cols=17 Identities=29% Similarity=0.374 Sum_probs=13.8
Q ss_pred eeeeccCCChhHHHHHH
Q psy1548 152 ILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 152 vli~apTGsGKT~~~~l 168 (448)
++|.|+||+|||++.-.
T Consensus 784 LYIyG~PGTGKTATVK~ 800 (1164)
T PTZ00112 784 LYISGMPGTGKTATVYS 800 (1164)
T ss_pred EEEECCCCCCHHHHHHH
Confidence 35999999999987543
No 310
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.55 E-value=0.19 Score=46.44 Aligned_cols=18 Identities=11% Similarity=0.233 Sum_probs=15.2
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.||+|+|||...
T Consensus 42 ~~~~~l~G~~G~GKT~La 59 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLL 59 (227)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999543
No 311
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.54 E-value=0.24 Score=49.25 Aligned_cols=24 Identities=33% Similarity=0.499 Sum_probs=17.9
Q ss_pred cceeeeccCCChhHHHHHHHHHHhh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l 174 (448)
.++++.||+|+|||.+. -.++..+
T Consensus 41 ~~i~I~G~~GtGKT~l~-~~~~~~l 64 (365)
T TIGR02928 41 SNVFIYGKTGTGKTAVT-KYVMKEL 64 (365)
T ss_pred CcEEEECCCCCCHHHHH-HHHHHHH
Confidence 57999999999999664 3444444
No 312
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.50 E-value=0.29 Score=43.72 Aligned_cols=39 Identities=13% Similarity=0.265 Sum_probs=24.9
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
....+++||||+|.+... ....+...+...++..-+++.
T Consensus 94 ~~~~kviiide~~~l~~~--~~~~Ll~~le~~~~~~~~il~ 132 (188)
T TIGR00678 94 ESGRRVVIIEDAERMNEA--AANALLKTLEEPPPNTLFILI 132 (188)
T ss_pred cCCeEEEEEechhhhCHH--HHHHHHHHhcCCCCCeEEEEE
Confidence 356789999999988663 334455555554545555544
No 313
>KOG1805|consensus
Probab=94.47 E-value=0.075 Score=57.47 Aligned_cols=120 Identities=22% Similarity=0.137 Sum_probs=69.0
Q ss_pred hhhhccccccceeeeeCcc-eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCce
Q psy1548 133 LHRVARAGRFGTKAVLGMD-ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK 211 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~-vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~ 211 (448)
|++ |+-.++..+| .+|.|-.|+|||..... ++..+.. .+.++|..+-|..-+..+.-.++.+. +.
T Consensus 674 Qr~------A~~k~L~aedy~LI~GMPGTGKTTtI~~-LIkiL~~--~gkkVLLtsyThsAVDNILiKL~~~~-----i~ 739 (1100)
T KOG1805|consen 674 QRQ------ALLKALAAEDYALILGMPGTGKTTTISL-LIKILVA--LGKKVLLTSYTHSAVDNILIKLKGFG-----IY 739 (1100)
T ss_pred HHH------HHHHHHhccchheeecCCCCCchhhHHH-HHHHHHH--cCCeEEEEehhhHHHHHHHHHHhccC-----cc
Confidence 888 8877777655 78899999999976432 2222222 23478888888876666655555442 22
Q ss_pred EEEEEcCcccHHhH-----------------HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh
Q psy1548 212 VGVFFGGLPIQKDE-----------------EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 212 v~~~~g~~~~~~~~-----------------~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~ 271 (448)
+..+-.+....++. .... +.+.|+.+|==.+.. ..+....+++.|+|||-.+...
T Consensus 740 ~lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~-~~~~IVa~TClgi~~----plf~~R~FD~cIiDEASQI~lP 811 (1100)
T KOG1805|consen 740 ILRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFL-DQTSIVACTCLGINH----PLFVNRQFDYCIIDEASQILLP 811 (1100)
T ss_pred eeecCCccccchHHHHHhcccccchhhHHHHHHHh-CCCcEEEEEccCCCc----hhhhccccCEEEEccccccccc
Confidence 22111111111111 1122 246788777432222 2233466889999999977543
No 314
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=94.45 E-value=0.54 Score=44.60 Aligned_cols=42 Identities=24% Similarity=0.229 Sum_probs=27.0
Q ss_pred eeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 144 ~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
-.+..|.-+++.|++|+|||....--+.+.... .+..++++.
T Consensus 25 gG~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~--~g~~vl~iS 66 (271)
T cd01122 25 KGLRKGELIILTAGTGVGKTTFLREYALDLITQ--HGVRVGTIS 66 (271)
T ss_pred EEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHh--cCceEEEEE
Confidence 355567889999999999996544333333222 134677776
No 315
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.40 E-value=0.69 Score=46.59 Aligned_cols=128 Identities=15% Similarity=0.161 Sum_probs=64.4
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
+.-+++.+|+|+|||....--+...... .+.++.++. +.+..+.+ +++.++... ++...
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~~~~--~G~~V~Lit~Dt~R~aA~e---QLk~yAe~l-gvp~~------------- 283 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKYFLH--MGKSVSLYTTDNYRIAAIE---QLKRYADTM-GMPFY------------- 283 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHh--cCCeEEEecccchhhhHHH---HHHHHHHhc-CCCee-------------
Confidence 3457899999999997754433322111 122444443 44444443 344443332 32211
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC---CCCeEEEEeccCCc-cH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP---HTKQVMMFSATLSK-EI 302 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~---~~~q~i~~SAT~~~-~~ 302 (448)
.+..+..+...+.. ...++++||=+-+..........+..++.... +...++.+|||... .+
T Consensus 284 ---------~~~~~~~l~~~l~~-----~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~ 349 (432)
T PRK12724 284 ---------PVKDIKKFKETLAR-----DGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHHT 349 (432)
T ss_pred ---------ehHHHHHHHHHHHh-----CCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHHH
Confidence 11112233333331 34567888866544222133444455554431 23457888999876 45
Q ss_pred HHHHHHh
Q psy1548 303 RPVCKKF 309 (448)
Q Consensus 303 ~~~~~~~ 309 (448)
....+.|
T Consensus 350 ~~~~~~f 356 (432)
T PRK12724 350 LTVLKAY 356 (432)
T ss_pred HHHHHHh
Confidence 5566555
No 316
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.34 E-value=0.3 Score=51.74 Aligned_cols=39 Identities=10% Similarity=0.272 Sum_probs=26.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|+|... ....+.+.+...+....+|+.+
T Consensus 117 gk~KV~IIDEVh~LS~~--A~NALLKtLEEPP~~v~FILaT 155 (702)
T PRK14960 117 GRFKVYLIDEVHMLSTH--SFNALLKTLEEPPEHVKFLFAT 155 (702)
T ss_pred CCcEEEEEechHhcCHH--HHHHHHHHHhcCCCCcEEEEEE
Confidence 35689999999977653 3344555666666666666644
No 317
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.32 E-value=0.28 Score=50.55 Aligned_cols=18 Identities=28% Similarity=0.396 Sum_probs=14.7
Q ss_pred ceeeeccCCChhHHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l 168 (448)
.+|+.||.|+|||..+.+
T Consensus 38 ~~Lf~GPpGtGKTTlA~~ 55 (472)
T PRK14962 38 AYIFAGPRGTGKTTVARI 55 (472)
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 469999999999976543
No 318
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.31 E-value=0.53 Score=46.14 Aligned_cols=44 Identities=20% Similarity=0.203 Sum_probs=27.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 196 (448)
+.++++.||||+|||... .++...+... +..++++ +..+|..++
T Consensus 183 ~~~Lll~G~~GtGKThLa-~aIa~~l~~~--g~~V~y~-t~~~l~~~l 226 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLS-NCIAKELLDR--GKSVIYR-TADELIEIL 226 (329)
T ss_pred CCcEEEECCCCCcHHHHH-HHHHHHHHHC--CCeEEEE-EHHHHHHHH
Confidence 588999999999999654 3444444332 3345554 445555443
No 319
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.31 E-value=0.41 Score=44.76 Aligned_cols=42 Identities=19% Similarity=0.271 Sum_probs=25.2
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
..+++.|++|+|||..+ ..+...+... +..++++ +..+|...
T Consensus 100 ~~~~l~G~~GtGKThLa-~aia~~l~~~--g~~v~~i-t~~~l~~~ 141 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLA-AAICNELLLR--GKSVLII-TVADIMSA 141 (244)
T ss_pred ceEEEECCCCCCHHHHH-HHHHHHHHhc--CCeEEEE-EHHHHHHH
Confidence 47899999999999654 3444444332 3345544 44444433
No 320
>PHA02653 RNA helicase NPH-II; Provisional
Probab=94.28 E-value=0.031 Score=59.90 Aligned_cols=53 Identities=25% Similarity=0.415 Sum_probs=41.8
Q ss_pred HHHHHHh--hccceeEeeccccCCcccccceeEeecc---CCC---------Cchhhhhhhcccccc
Q psy1548 90 EILRAIV--DCWRILVATNLFGRGMDIERVNIVFNYD---MPE---------DSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~--~~~~~~~~~~~~~~~~d~~~~~~v~~~~---~p~---------~~~~yQ~~~~~~~~~ 142 (448)
+.++.+. ...+|.|||+++++|+|.++++.|+++. .|. +-..|.|.+|||||.
T Consensus 436 q~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~ 502 (675)
T PHA02653 436 EILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRV 502 (675)
T ss_pred HHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCC
Confidence 3445553 2348999999999999999999999997 554 345778999999995
No 321
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.24 E-value=0.31 Score=51.61 Aligned_cols=41 Identities=10% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
.+.+++||||+|+|... .+. .+.+.+..-+.++.+|+.|.-
T Consensus 123 gr~KViIIDEah~Ls~~-AaN-ALLKTLEEPP~~v~FILaTte 163 (700)
T PRK12323 123 GRFKVYMIDEVHMLTNH-AFN-AMLKTLEEPPEHVKFILATTD 163 (700)
T ss_pred CCceEEEEEChHhcCHH-HHH-HHHHhhccCCCCceEEEEeCC
Confidence 45789999999988764 443 344445555667777766543
No 322
>PF05729 NACHT: NACHT domain
Probab=94.21 E-value=0.36 Score=41.56 Aligned_cols=39 Identities=21% Similarity=0.291 Sum_probs=24.3
Q ss_pred EEEecchhHHHhhhh------hHHHHHHHHHh-CCCCCeEEEEecc
Q psy1548 259 HFILDECDKMLEQLE------MRRDVQEIFRS-SPHTKQVMMFSAT 297 (448)
Q Consensus 259 ~lViDEah~l~~~~~------~~~~~~~i~~~-l~~~~q~i~~SAT 297 (448)
++|+|-+|.+..... +...+..++.. ++++.++++.|.+
T Consensus 84 llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~ 129 (166)
T PF05729_consen 84 LLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRP 129 (166)
T ss_pred EEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcC
Confidence 389999998876311 33445555554 4567777776654
No 323
>KOG4284|consensus
Probab=94.20 E-value=0.033 Score=57.56 Aligned_cols=44 Identities=59% Similarity=1.054 Sum_probs=42.1
Q ss_pred ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
+|+|+|++-.||||.+.+..|+|++.|.....|-+.+|||||..
T Consensus 324 rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRFG 367 (980)
T KOG4284|consen 324 RILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRFG 367 (980)
T ss_pred EEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhccccc
Confidence 89999999999999999999999999999999999999999943
No 324
>TIGR02785 addA_Gpos recombination helicase AddA, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species.
Probab=94.15 E-value=0.24 Score=57.33 Aligned_cols=118 Identities=22% Similarity=0.163 Sum_probs=72.8
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceE
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKV 212 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v 212 (448)
|++ +|. ..|++++|.|..|||||.+..--++..+..+....++++|+=|++-+..+.+.+..-.... +.
T Consensus 6 Q~~------ai~--~~~~~~lv~A~AGsGKT~~lv~r~~~~~~~~~~~~~il~~tFt~~aa~e~~~ri~~~l~~~--~~- 74 (1232)
T TIGR02785 6 QWQ------AIY--TRGQNILVSASAGSGKTAVLVERIIKKILRGVDIDRLLVVTFTNAAAREMKERIEEALQKA--LQ- 74 (1232)
T ss_pred HHH------HHh--CCCCCEEEEecCCCcHHHHHHHHHHHHHhcCCCHhhEEEEeccHHHHHHHHHHHHHHHHHH--Hh-
Confidence 888 775 3689999999999999988766666665444333469999999999999888877644321 10
Q ss_pred EEEEcCcccHHhH-HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCe--eEEEecchhH
Q psy1548 213 GVFFGGLPIQKDE-EYLKTHNPQIVVGTPGRILALVRNKKLNLSLL--KHFILDECDK 267 (448)
Q Consensus 213 ~~~~g~~~~~~~~-~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i--~~lViDEah~ 267 (448)
..+..... ..+.. -...-|+|-..++..+-+.....-++ .+=|.||...
T Consensus 75 -----~~p~~~~L~~q~~~-~~~~~i~Tihsf~~~~~~~~~~~l~ldP~F~i~de~e~ 126 (1232)
T TIGR02785 75 -----QEPNSKHLRRQLAL-LNTANISTLHSFCLKVIRKHYYLLDLDPSFRILTDTEQ 126 (1232)
T ss_pred -----cCchhHHHHHHHhh-ccCCeEeeHHHHHHHHHHHhhhhcCCCCCceeCCHHHH
Confidence 00111111 11111 24678999988865443322211111 2345888875
No 325
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=94.14 E-value=0.32 Score=51.59 Aligned_cols=40 Identities=13% Similarity=0.226 Sum_probs=27.0
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
+...+++||||+|.|... -...+.+.+...+..+.+|+.+
T Consensus 130 ~a~~KVvIIDEad~Ls~~--a~naLLKtLEePp~~~~fIl~t 169 (598)
T PRK09111 130 SARYKVYIIDEVHMLSTA--AFNALLKTLEEPPPHVKFIFAT 169 (598)
T ss_pred cCCcEEEEEEChHhCCHH--HHHHHHHHHHhCCCCeEEEEEe
Confidence 456789999999988653 3344445566666677776654
No 326
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=94.06 E-value=0.26 Score=55.51 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=69.1
Q ss_pred chhhhhhhccccccceeeee-CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 129 SDTYLHRVARAGRFGTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~-g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
+.+=|.+ ++..+.. ++-++++|+.|+|||.+. -++...+.. .+.+++.++||-.-+..+ ..-.
T Consensus 382 Ls~eQ~~------Av~~i~~~~r~~~v~G~AGTGKTt~l-~~~~~~~e~--~G~~V~g~ApTgkAA~~L----~e~~--- 445 (1102)
T PRK13826 382 LSDEQKT------AIEHVAGPARIAAVVGRAGAGKTTMM-KAAREAWEA--AGYRVVGGALAGKAAEGL----EKEA--- 445 (1102)
T ss_pred CCHHHHH------HHHHHhccCCeEEEEeCCCCCHHHHH-HHHHHHHHH--cCCeEEEEcCcHHHHHHH----HHhh---
Confidence 3334888 6666544 456889999999999653 344443332 345789999998655443 2211
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP- 286 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~- 286 (448)
++.. .|..+++-....+...+..-++|||||+-++.. ..+..+++..+
T Consensus 446 -Gi~a-------------------------~TIas~ll~~~~~~~~l~~~~vlVIDEAsMv~~-----~~m~~Ll~~~~~ 494 (1102)
T PRK13826 446 -GIQS-------------------------RTLSSWELRWNQGRDQLDNKTVFVLDEAGMVAS-----RQMALFVEAVTR 494 (1102)
T ss_pred -CCCe-------------------------eeHHHHHhhhccCccCCCCCcEEEEECcccCCH-----HHHHHHHHHHHh
Confidence 2221 122222111111223345567899999995533 23444555554
Q ss_pred CCCeEEEEecc
Q psy1548 287 HTKQVMMFSAT 297 (448)
Q Consensus 287 ~~~q~i~~SAT 297 (448)
...+++++.=+
T Consensus 495 ~garvVLVGD~ 505 (1102)
T PRK13826 495 AGAKLVLVGDP 505 (1102)
T ss_pred cCCEEEEECCH
Confidence 46778877655
No 327
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=94.06 E-value=1.6 Score=52.74 Aligned_cols=231 Identities=10% Similarity=0.073 Sum_probs=118.7
Q ss_pred hhhhccccccceeeeeC--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 133 LHRVARAGRFGTKAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
|.+ ++..++.. +=.+++++.|+|||.+ +-.++..+.. .+.+++.++||..-+..+.+... .
T Consensus 434 Q~~------Av~~il~s~~~v~ii~G~aGTGKTt~-l~~l~~~~~~--~G~~V~~lAPTgrAA~~L~e~~g--------~ 496 (1960)
T TIGR02760 434 NKD------AVSTLFTSTKRFIIINGFGGTGSTEI-AQLLLHLASE--QGYEIQIITAGSLSAQELRQKIP--------R 496 (1960)
T ss_pred HHH------HHHHHHhCCCCeEEEEECCCCCHHHH-HHHHHHHHHh--cCCeEEEEeCCHHHHHHHHHHhc--------c
Confidence 888 77777764 5678999999999965 3344443332 35689999999976555433211 1
Q ss_pred eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCC
Q psy1548 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTK 289 (448)
Q Consensus 211 ~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~ 289 (448)
.... .......+.. ..-..|...++ .....+..-++||||||-++.. ..+..+++.. +.+.
T Consensus 497 ~A~T------i~~~l~~l~~---~~~~~tv~~fl----~~~~~l~~~~vlIVDEAsMl~~-----~~~~~Ll~~a~~~ga 558 (1960)
T TIGR02760 497 LAST------FITWVKNLFN---DDQDHTVQGLL----DKSSPFSNKDIFVVDEANKLSN-----NELLKLIDKAEQHNS 558 (1960)
T ss_pred hhhh------HHHHHHhhcc---cccchhHHHhh----cccCCCCCCCEEEEECCCCCCH-----HHHHHHHHHHhhcCC
Confidence 1000 0000111111 11122333332 1222345667999999995533 3345555544 4678
Q ss_pred eEEEEecc--CCc----cHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC--CCCeEEEEE
Q psy1548 290 QVMMFSAT--LSK----EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL--EFNQVVIFV 361 (448)
Q Consensus 290 q~i~~SAT--~~~----~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~ 361 (448)
++|++.=+ ++. .+..++.... -+... .... ......+ .........+...+.+.+-.. ...+++|+.
T Consensus 559 rvVlvGD~~QL~sV~aG~~f~~L~~~g-v~t~~-l~~i-~rq~~~v--~i~~~~~~~r~~~ia~~y~~L~~~r~~tliv~ 633 (1960)
T TIGR02760 559 KLILLNDSAQRQGMSAGSAIDLLKEGG-VTTYA-WVDT-KQQKASV--EISEAVDKLRVDYIASAWLDLTPDRQNSQVLA 633 (1960)
T ss_pred EEEEEcChhhcCccccchHHHHHHHCC-CcEEE-eecc-cccCcce--eeeccCchHHHHHHHHHHHhcccccCceEEEc
Confidence 88887665 222 2333333321 12221 1111 1111112 122222233444444444332 233589999
Q ss_pred CccHHHHHHHHHHHh----CC------CcEEEEe-CCCCHHHHHHHHHHHhcCC
Q psy1548 362 KSVTRCIALSTLLSE----QN------FPAVSIH-RGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 362 ~s~~~a~~l~~~L~~----~g------~~~~~lh-~~~~~~eR~~~l~~F~~g~ 404 (448)
.+.+....|....+. .| .....+. ..|+..++... ..|+.|.
T Consensus 634 ~t~~dr~~Ln~~iR~~L~~~G~L~~~~~~~~~L~p~~lt~~e~r~~-~~Yr~Gd 686 (1960)
T TIGR02760 634 TTHREQQDLTQIIRNALKQEGQLSRQEVTVPTLKPVNLTGIQRRNA-AHYKQGM 686 (1960)
T ss_pred CCcHHHHHHHHHHHHHHHHcCCcCCCceEEEEeccCCCCHHHHhhH-hhcCCCC
Confidence 998888888876654 22 2233333 46888888744 6666655
No 328
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.06 E-value=0.6 Score=46.37 Aligned_cols=24 Identities=25% Similarity=0.185 Sum_probs=18.4
Q ss_pred eeCcceeeeccCCChhHHHHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLAT 170 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~ 170 (448)
..++-+++.||+|+|||....--+
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA 227 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLG 227 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHH
Confidence 346788999999999997654433
No 329
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=94.05 E-value=0.067 Score=52.12 Aligned_cols=46 Identities=17% Similarity=0.312 Sum_probs=32.1
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 193 (448)
..+++++++|+||||||.. +-.++..+...+...+++.+=.+.||.
T Consensus 142 ~~~~nilI~G~tGSGKTTl-l~aL~~~i~~~~~~~rivtiEd~~El~ 187 (323)
T PRK13833 142 DSRLNIVISGGTGSGKTTL-ANAVIAEIVASAPEDRLVILEDTAEIQ 187 (323)
T ss_pred HcCCeEEEECCCCCCHHHH-HHHHHHHHhcCCCCceEEEecCCcccc
Confidence 3478999999999999954 455666554333344777777777763
No 330
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=94.02 E-value=0.39 Score=51.70 Aligned_cols=42 Identities=10% Similarity=0.289 Sum_probs=37.4
Q ss_pred eEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 258 ~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
-++|+|+.|.+.+. .....+..++++.|++...++.|-+-|.
T Consensus 131 l~LVlDDyHli~~~-~l~~~l~fLl~~~P~~l~lvv~SR~rP~ 172 (894)
T COG2909 131 LYLVLDDYHLISDP-ALHEALRFLLKHAPENLTLVVTSRSRPQ 172 (894)
T ss_pred eEEEeccccccCcc-cHHHHHHHHHHhCCCCeEEEEEeccCCC
Confidence 58999999999887 8889999999999999999999887554
No 331
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=93.99 E-value=1.1 Score=40.05 Aligned_cols=145 Identities=13% Similarity=0.111 Sum_probs=76.5
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 227 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 227 (448)
...++++..++|.|||.+++--++..+.. +.+++++-=.+--. -......+.. ++++.....-.+.....+
T Consensus 21 ~~g~v~v~~g~GkGKtt~a~g~a~ra~g~---G~~V~ivQFlKg~~--~~GE~~~l~~-l~~v~~~~~g~~~~~~~~--- 91 (191)
T PRK05986 21 EKGLLIVHTGNGKGKSTAAFGMALRAVGH---GKKVGVVQFIKGAW--STGERNLLEF-GGGVEFHVMGTGFTWETQ--- 91 (191)
T ss_pred cCCeEEEECCCCCChHHHHHHHHHHHHHC---CCeEEEEEEecCCC--ccCHHHHHhc-CCCcEEEECCCCCcccCC---
Confidence 45789999999999998876555554433 34566654222110 0011222211 123333322111111000
Q ss_pred HhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCCeEEEEeccCCccHHHH
Q psy1548 228 LKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 228 l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~ 305 (448)
. ..--.......+...+ ..+.-..++++|+||+-..++. ++ ...+..+++..|...-+|+..-..|+++.+.
T Consensus 92 ---~-~~e~~~~~~~~~~~a~-~~l~~~~ydlvVLDEi~~Al~~-gli~~eevi~~L~~rp~~~evVlTGR~~p~~Lie~ 165 (191)
T PRK05986 92 ---D-RERDIAAAREGWEEAK-RMLADESYDLVVLDELTYALKY-GYLDVEEVLEALNARPGMQHVVITGRGAPRELIEA 165 (191)
T ss_pred ---C-cHHHHHHHHHHHHHHH-HHHhCCCCCEEEEehhhHHHHC-CCccHHHHHHHHHcCCCCCEEEEECCCCCHHHHHh
Confidence 0 0000001111111111 1122356788999999988776 54 5677778888888888888888888877666
Q ss_pred HH
Q psy1548 306 CK 307 (448)
Q Consensus 306 ~~ 307 (448)
+.
T Consensus 166 AD 167 (191)
T PRK05986 166 AD 167 (191)
T ss_pred Cc
Confidence 54
No 332
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=0.41 Score=48.16 Aligned_cols=46 Identities=7% Similarity=0.288 Sum_probs=27.9
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHH
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~ 303 (448)
...++++|||+|.|... ....+.+.+..-+++..+|+.|.+ +..+.
T Consensus 116 ~~~kViiIDead~m~~~--aanaLLk~LEep~~~~~fIL~a~~-~~~ll 161 (394)
T PRK07940 116 GRWRIVVIEDADRLTER--AANALLKAVEEPPPRTVWLLCAPS-PEDVL 161 (394)
T ss_pred CCcEEEEEechhhcCHH--HHHHHHHHhhcCCCCCeEEEEECC-hHHCh
Confidence 56688999999999764 334455555554555555554444 44433
No 333
>PRK11054 helD DNA helicase IV; Provisional
Probab=93.96 E-value=0.098 Score=56.38 Aligned_cols=72 Identities=18% Similarity=0.122 Sum_probs=51.6
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.+++.+-|++ ++-. ...+++|.|..|||||.+..--+...+... ..+.++|+++.|+..|..+.+.+....
T Consensus 194 ~~~L~~~Q~~------av~~--~~~~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 194 SSPLNPSQAR------AVVN--GEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCCHHHHH------HHhC--CCCCeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 4667777888 5532 235689999999999988655544444332 234589999999999999998887655
Q ss_pred c
Q psy1548 205 K 205 (448)
Q Consensus 205 ~ 205 (448)
+
T Consensus 266 g 266 (684)
T PRK11054 266 G 266 (684)
T ss_pred C
Confidence 4
No 334
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.96 E-value=0.39 Score=50.01 Aligned_cols=39 Identities=10% Similarity=0.323 Sum_probs=27.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
.+.+++||||+|.|... .+ ..+.+.+...|..+.+|+.+
T Consensus 118 ~~~kV~iIDE~~~ls~~-a~-naLLk~LEepp~~~~fIlat 156 (509)
T PRK14958 118 GRFKVYLIDEVHMLSGH-SF-NALLKTLEEPPSHVKFILAT 156 (509)
T ss_pred CCcEEEEEEChHhcCHH-HH-HHHHHHHhccCCCeEEEEEE
Confidence 45689999999988664 33 44555666666777777654
No 335
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.96 E-value=0.086 Score=50.97 Aligned_cols=45 Identities=31% Similarity=0.436 Sum_probs=32.3
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
..+++++++|+||||||.. +-.++..+.......+++++-.+.|+
T Consensus 130 ~~~~~ilI~G~tGSGKTTl-l~al~~~i~~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 130 LARKNILVVGGTGSGKTTL-ANALLAEIAKNDPTDRVVIIEDTREL 174 (299)
T ss_pred HcCCeEEEECCCCCCHHHH-HHHHHHHhhccCCCceEEEECCchhh
Confidence 3468999999999999954 45566665443334478888777776
No 336
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.94 E-value=0.14 Score=51.85 Aligned_cols=26 Identities=27% Similarity=0.339 Sum_probs=21.5
Q ss_pred cceeeeeCcceeeeccCCChhHHHHH
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~ 167 (448)
.+..+..++++++.+|+|+|||..+.
T Consensus 187 l~~~L~~~~~iil~GppGtGKT~lA~ 212 (459)
T PRK11331 187 ILKRLTIKKNIILQGPPGVGKTFVAR 212 (459)
T ss_pred HHHHHhcCCCEEEECCCCCCHHHHHH
Confidence 45566679999999999999997653
No 337
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=93.93 E-value=0.82 Score=42.38 Aligned_cols=55 Identities=15% Similarity=0.089 Sum_probs=33.4
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+..|.-+++.+++|+|||...+--+...+. .+.++++++.. +-..+..+.+..+.
T Consensus 21 i~~g~~~~i~G~~G~GKTtl~~~~~~~~~~---~g~~~~yi~~e-~~~~~~~~~~~~~g 75 (230)
T PRK08533 21 IPAGSLILIEGDESTGKSILSQRLAYGFLQ---NGYSVSYVSTQ-LTTTEFIKQMMSLG 75 (230)
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHHHh---CCCcEEEEeCC-CCHHHHHHHHHHhC
Confidence 344788999999999999664333333222 23467888743 33455555555543
No 338
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=93.88 E-value=0.63 Score=49.34 Aligned_cols=54 Identities=9% Similarity=0.181 Sum_probs=40.7
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
+-.++.+|-|.|||.+..+.+...+.. .+.+++|.+|...-+.++++.++.+..
T Consensus 188 ~~tV~taPRqrGKS~iVgi~l~~La~f--~Gi~IlvTAH~~~ts~evF~rv~~~le 241 (752)
T PHA03333 188 CYTAATVPRRCGKTTIMAIILAAMISF--LEIDIVVQAQRKTMCLTLYNRVETVVH 241 (752)
T ss_pred cceEEEeccCCCcHHHHHHHHHHHHHh--cCCeEEEECCChhhHHHHHHHHHHHHH
Confidence 456788999999998765554433322 256899999999999998888777665
No 339
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=93.83 E-value=0.87 Score=43.37 Aligned_cols=134 Identities=16% Similarity=0.255 Sum_probs=63.9
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
++-+++.+|+|+|||.+..--+.. +.. .+.+++++. +.|.-+.+ +++.|.... ++.+ +..+....
T Consensus 72 ~~vi~l~G~~G~GKTTt~akLA~~-l~~--~g~~V~li~~D~~r~~a~~---ql~~~~~~~-~i~~--~~~~~~~d---- 138 (272)
T TIGR00064 72 PNVILFVGVNGVGKTTTIAKLANK-LKK--QGKSVLLAAGDTFRAAAIE---QLEEWAKRL-GVDV--IKQKEGAD---- 138 (272)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH-HHh--cCCEEEEEeCCCCCHHHHH---HHHHHHHhC-CeEE--EeCCCCCC----
Confidence 356778899999999765443332 222 233566665 34443332 444444443 4332 22211100
Q ss_pred HHhcCCCcEEEEcHHH-HHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC------CCCeEEEEeccCC
Q psy1548 227 YLKTHNPQIVVGTPGR-ILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP------HTKQVMMFSATLS 299 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~-l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~------~~~q~i~~SAT~~ 299 (448)
|.. ....+.. ....+.+++++|=+-++.........+..+.+..+ +.--++.++|+..
T Consensus 139 -------------p~~~~~~~l~~--~~~~~~D~ViIDT~G~~~~d~~~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~ 203 (272)
T TIGR00064 139 -------------PAAVAFDAIQK--AKARNIDVVLIDTAGRLQNKVNLMDELKKIKRVIKKVDKDAPDEVLLVLDATTG 203 (272)
T ss_pred -------------HHHHHHHHHHH--HHHCCCCEEEEeCCCCCcchHHHHHHHHHHHHHHhcccCCCCceEEEEEECCCC
Confidence 111 1111110 00133456666666544322134445555554443 4556788899876
Q ss_pred ccHHHHHHHhc
Q psy1548 300 KEIRPVCKKFM 310 (448)
Q Consensus 300 ~~~~~~~~~~l 310 (448)
.+....+..|.
T Consensus 204 ~~~~~~~~~f~ 214 (272)
T TIGR00064 204 QNALEQAKVFN 214 (272)
T ss_pred HHHHHHHHHHH
Confidence 55444444444
No 340
>PRK13342 recombination factor protein RarA; Reviewed
Probab=93.81 E-value=0.47 Score=48.15 Aligned_cols=18 Identities=22% Similarity=0.314 Sum_probs=15.0
Q ss_pred cceeeeccCCChhHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~ 167 (448)
.++++.||+|+|||..+.
T Consensus 37 ~~ilL~GppGtGKTtLA~ 54 (413)
T PRK13342 37 SSMILWGPPGTGKTTLAR 54 (413)
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 478999999999996643
No 341
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=93.81 E-value=0.29 Score=43.57 Aligned_cols=106 Identities=16% Similarity=0.165 Sum_probs=58.2
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
|+=-++.+|..||||.-.+-.+-. .. -.+.++++..|-..- ++. .-.+..-.|-.
T Consensus 4 g~l~~i~gpM~SGKT~eLl~r~~~-~~--~~g~~v~vfkp~iD~---------R~~----~~~V~Sr~G~~--------- 58 (201)
T COG1435 4 GWLEFIYGPMFSGKTEELLRRARR-YK--EAGMKVLVFKPAIDT---------RYG----VGKVSSRIGLS--------- 58 (201)
T ss_pred EEEEEEEccCcCcchHHHHHHHHH-HH--HcCCeEEEEeccccc---------ccc----cceeeeccCCc---------
Confidence 344578999999999753332222 22 234577887776431 111 11111111211
Q ss_pred hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
.+-++|-.+..+...+......+. ++++.||||+-+ +. ..-..+..+...+
T Consensus 59 ---~~A~~i~~~~~i~~~i~~~~~~~~-~~~v~IDEaQF~-~~-~~v~~l~~lad~l 109 (201)
T COG1435 59 ---SEAVVIPSDTDIFDEIAALHEKPP-VDCVLIDEAQFF-DE-ELVYVLNELADRL 109 (201)
T ss_pred ---ccceecCChHHHHHHHHhcccCCC-cCEEEEehhHhC-CH-HHHHHHHHHHhhc
Confidence 134666677777777765433332 789999999944 33 4445555555543
No 342
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=93.81 E-value=0.052 Score=58.62 Aligned_cols=47 Identities=32% Similarity=0.401 Sum_probs=42.5
Q ss_pred hccceeEeeccccCCcccc---cce-----eEeeccCCCCchhhhhhhccccccc
Q psy1548 97 DCWRILVATNLFGRGMDIE---RVN-----IVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 97 ~~~~~~~~~~~~~~~~d~~---~~~-----~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..|.|.||||++|||.|+. .|. .|+++..|...+-|.|..|||||..
T Consensus 487 ~~g~VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG 541 (796)
T PRK12906 487 QRGAVTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQG 541 (796)
T ss_pred CCceEEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCC
Confidence 4579999999999999994 788 9999999999999999999999943
No 343
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.79 E-value=0.56 Score=48.39 Aligned_cols=39 Identities=13% Similarity=0.284 Sum_probs=25.4
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.+... .+ ..+.+.+..-|+...+|+.+
T Consensus 115 ~~~KVvIIDEah~Ls~~-A~-NaLLK~LEePp~~v~fIlat 153 (491)
T PRK14964 115 SKFKVYIIDEVHMLSNS-AF-NALLKTLEEPAPHVKFILAT 153 (491)
T ss_pred CCceEEEEeChHhCCHH-HH-HHHHHHHhCCCCCeEEEEEe
Confidence 56789999999977653 33 34455555555666666544
No 344
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=93.74 E-value=0.21 Score=54.56 Aligned_cols=65 Identities=17% Similarity=0.123 Sum_probs=49.9
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. ...+++|.|..|||||.+..--+...+.. +-...++|+++.|+.-|..+.+.+.++..
T Consensus 9 Q~~------av~~--~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 9 QRE------AVAA--PPGNLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred HHH------HHcC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 888 6543 24689999999999998865555555543 22345899999999999999999988765
No 345
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=93.74 E-value=0.054 Score=53.78 Aligned_cols=61 Identities=21% Similarity=0.347 Sum_probs=42.5
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChh
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGK 162 (448)
..++|||+++++|+|.+ +..++++.. +++.|-|.+||+||.......+.++++--+...++
T Consensus 279 ~~ilvaT~~~~~GiDi~-~~~vi~~~~--~~~~~iqr~GR~gR~g~~~~~~~~~~v~~~~~~~~ 339 (358)
T TIGR01587 279 KFVIVATQVIEASLDIS-ADVMITELA--PIDSLIQRLGRLHRYGRKNGENFEVYIITIAPEGK 339 (358)
T ss_pred CeEEEECcchhceeccC-CCEEEEcCC--CHHHHHHHhccccCCCCCCCCCCeEEEEeecCCCC
Confidence 36999999999999995 677777644 47889999999999654322223555444433333
No 346
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=93.68 E-value=0.37 Score=48.27 Aligned_cols=157 Identities=14% Similarity=0.161 Sum_probs=76.6
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCccHHHH---HHHhcCCCeEEEEcCcccccccceeE
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIRPV---CKKFMHDPMEVYVDDEAKLTLHGLQQ 331 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~~~~~---~~~~l~~~~~i~~~~~~~~~~~~i~~ 331 (448)
++++++||.++.+.........+-.++..+. ...|+++.|...|.++..+ ++.-+.--..+.+.+
T Consensus 175 ~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~~~kqIvltsdr~P~~l~~~~~rL~SR~~~Gl~~~I~~----------- 243 (408)
T COG0593 175 SLDLLLIDDIQFLAGKERTQEEFFHTFNALLENGKQIVLTSDRPPKELNGLEDRLRSRLEWGLVVEIEP----------- 243 (408)
T ss_pred ccCeeeechHhHhcCChhHHHHHHHHHHHHHhcCCEEEEEcCCCchhhccccHHHHHHHhceeEEeeCC-----------
Confidence 6788999999977554122333444444443 4558888888877764422 221111112222211
Q ss_pred EEEEcCcchHHHHHHHHHhhCCC---CeEEEE-----ECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 332 HYVKLKENEKNKKLFELLDVLEF---NQVVIF-----VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 332 ~~~~~~~~~k~~~L~~ll~~~~~---~~~IIF-----~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
...+.+...|......... ..++-| ..+..+.+...+.|.. -+......++.+--.++++++...
T Consensus 244 ----Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~~l~~---~a~~~~~~iTi~~v~e~L~~~~~~ 316 (408)
T COG0593 244 ----PDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALNRLDA---FALFTKRAITIDLVKEILKDLLRA 316 (408)
T ss_pred ----CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHHHHHH---HHHhcCccCcHHHHHHHHHHhhcc
Confidence 1223344444443322110 011111 1222223332222221 122223367777777788777664
Q ss_pred CCceEEEEecChhhHHHHHHHHHHhcCCCCCCCcc
Q psy1548 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDE 438 (448)
Q Consensus 404 ~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~ 438 (448)
.. . +|. ...++.+-+.|+++..++-..
T Consensus 317 ~~----~-iti---e~I~~~Va~~y~v~~~dl~s~ 343 (408)
T COG0593 317 GE----K-ITI---EDIQKIVAEYYNVKVSDLLSK 343 (408)
T ss_pred cc----c-CCH---HHHHHHHHHHhCCCHHHhhcc
Confidence 43 2 332 356677888888888776443
No 347
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=93.65 E-value=0.22 Score=45.61 Aligned_cols=56 Identities=11% Similarity=0.230 Sum_probs=29.9
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHH-h---hhhhHHHHHHHHHhCCC-CCeEEEEeccC
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKML-E---QLEMRRDVQEIFRSSPH-TKQVMMFSATL 298 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~-~---~~~~~~~~~~i~~~l~~-~~q~i~~SAT~ 298 (448)
+...+...+...... -+||+||+|.+. . ...+...+..++..... ....+.++++-
T Consensus 105 ~l~~~~~~l~~~~~~----~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~v~~~S~ 165 (234)
T PF01637_consen 105 ALERLLEKLKKKGKK----VIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLLSQQNVSIVITGSS 165 (234)
T ss_dssp -HHHHHHHHHHCHCC----EEEEEETGGGGGBCTTTTHHHHHHHHHHHHH----TTEEEEEEESS
T ss_pred HHHHHHHHHHhcCCc----EEEEEecHHHHhhcccchHHHHHHHHHHHhhccccCCceEEEECCc
Confidence 344455555443221 579999999998 1 12566667777666332 22334445543
No 348
>KOG0327|consensus
Probab=93.63 E-value=0.069 Score=51.88 Aligned_cols=76 Identities=33% Similarity=0.604 Sum_probs=59.0
Q ss_pred hhccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 68 KEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
....+..++.-+...++.....-+.+.-....+|+|.|...+||||...+..|++|..|.....|=+.+||+||+.
T Consensus 283 L~~~~~~~s~~~~d~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~g 358 (397)
T KOG0327|consen 283 LRAHGFTVSAIHGDMEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRFG 358 (397)
T ss_pred HhhCCceEEEeecccchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhcccccccC
Confidence 3344555555555556655555555555666799999999999999999999999999999988888888888843
No 349
>COG3972 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=93.62 E-value=0.29 Score=49.42 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=48.0
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+..|.. +.-..-.|+. .|.+-.|||||...+.-+.. +......-++++.+-|+.|+.++...+.+|.
T Consensus 164 D~~Q~k------aa~~~~~G~q-rIrGLAGSGKT~~La~Kaa~-lh~knPd~~I~~Tfftk~L~s~~r~lv~~F~ 230 (660)
T COG3972 164 DTDQTK------AAFQSGFGKQ-RIRGLAGSGKTELLAHKAAE-LHSKNPDSRIAFTFFTKILASTMRTLVPEFF 230 (660)
T ss_pred cchhhe------eeeecCCchh-hhhcccCCCchhHHHHHHHH-HhcCCCCceEEEEeehHHHHHHHHHHHHHHH
Confidence 444777 4445555666 78899999999875544433 3333344589999999999999988888776
No 350
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=93.58 E-value=0.25 Score=53.90 Aligned_cols=65 Identities=18% Similarity=0.164 Sum_probs=49.4
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. ...+++|.|+.|||||.+..--+...+.. +-...++|+|+-|+.-|.++.+.+.++.+
T Consensus 14 Q~~------av~~--~~g~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 14 QRE------AVAA--PLGNMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred HHH------HHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 888 5543 24689999999999998865555555432 22345799999999999999999988764
No 351
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.53 E-value=1 Score=44.81 Aligned_cols=26 Identities=31% Similarity=0.526 Sum_probs=18.5
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhc
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLET 176 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~ 176 (448)
.|+++.|+||+|||.+.-. ++..+..
T Consensus 43 ~n~~iyG~~GTGKT~~~~~-v~~~l~~ 68 (366)
T COG1474 43 SNIIIYGPTGTGKTATVKF-VMEELEE 68 (366)
T ss_pred ccEEEECCCCCCHhHHHHH-HHHHHHh
Confidence 4799999999999977433 3344433
No 352
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.45 E-value=0.48 Score=49.39 Aligned_cols=39 Identities=15% Similarity=0.319 Sum_probs=27.8
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||||.|... ....+.+.+...|+...+|+.+
T Consensus 116 ~~~KVvIIDEad~Lt~~--A~NALLK~LEEpp~~t~FIL~t 154 (535)
T PRK08451 116 ARFKIFIIDEVHMLTKE--AFNALLKTLEEPPSYVKFILAT 154 (535)
T ss_pred CCeEEEEEECcccCCHH--HHHHHHHHHhhcCCceEEEEEE
Confidence 56789999999988663 3445555666667777777665
No 353
>PRK11823 DNA repair protein RadA; Provisional
Probab=93.36 E-value=0.45 Score=48.78 Aligned_cols=56 Identities=27% Similarity=0.334 Sum_probs=35.3
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
-+..|.-+++.+++|+|||...+--+. .... .+.+++|+.- .+-..|+...+.++.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~-~~a~--~g~~vlYvs~-Ees~~qi~~ra~rlg 131 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAA-RLAA--AGGKVLYVSG-EESASQIKLRAERLG 131 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHH-HHHh--cCCeEEEEEc-cccHHHHHHHHHHcC
Confidence 344567889999999999965433332 2221 2447888874 445567766666654
No 354
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.091 Score=53.00 Aligned_cols=58 Identities=29% Similarity=0.532 Sum_probs=46.7
Q ss_pred ccCCCCHHHHHHHhhc-----cceeEeeccccCCcccccceeEeecc-CCCCchhhhhhhccccc
Q psy1548 83 RDFLLKPEILRAIVDC-----WRILVATNLFGRGMDIERVNIVFNYD-MPEDSDTYLHRVARAGR 141 (448)
Q Consensus 83 ~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~d~~~~~~v~~~~-~p~~~~~yQ~~~~~~~~ 141 (448)
.+.|+++..++.+.+. ..|+|||++...|+|.|+++.|+=|+ -|++|+.-|.. ||+||
T Consensus 405 ~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlVifYEpvpSeIR~IQR~-GRTGR 468 (542)
T COG1111 405 GDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLVIFYEPVPSEIRSIQRK-GRTGR 468 (542)
T ss_pred cccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEEEEecCCcHHHHHHHhh-Ccccc
Confidence 3467777666555433 48999999999999999999998776 78889888988 88877
No 355
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=93.34 E-value=0.94 Score=41.76 Aligned_cols=55 Identities=18% Similarity=0.208 Sum_probs=32.7
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+..|..+++.+++|+|||....--+...+.. +..+++++- .+...++.+.++.+.
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~---g~~~~~is~-e~~~~~i~~~~~~~g 71 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRD---GDPVIYVTT-EESRESIIRQAAQFG 71 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEEc-cCCHHHHHHHHHHhC
Confidence 4457899999999999996544333333322 335666663 333455555555443
No 356
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=93.22 E-value=1.1 Score=45.36 Aligned_cols=59 Identities=17% Similarity=0.138 Sum_probs=31.9
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEE
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVF 215 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~ 215 (448)
.-++++|++|+|||.+..--+. .+.. .+.++++++ |.|.-+.+ +++.++... ++.+...
T Consensus 101 ~vi~lvG~~GvGKTTtaaKLA~-~l~~--~G~kV~lV~~D~~R~aA~e---QLk~~a~~~-~vp~~~~ 161 (429)
T TIGR01425 101 NVIMFVGLQGSGKTTTCTKLAY-YYQR--KGFKPCLVCADTFRAGAFD---QLKQNATKA-RIPFYGS 161 (429)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHH--CCCCEEEEcCcccchhHHH---HHHHHhhcc-CCeEEee
Confidence 3578999999999966432222 2222 233555555 45554444 444455443 5554433
No 357
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=93.20 E-value=3.1 Score=40.91 Aligned_cols=147 Identities=15% Similarity=0.087 Sum_probs=63.0
Q ss_pred eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH---HHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK---EYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~---~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
++.++.|+|||.+..+.++..+...+....+++...+..+...+.. .+..+................ .. +.
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-----~~ 74 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPSWFEIKFNEWNDRK-II-----LP 74 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-TTTS--EEEE-SSE-EE-----ET
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHHhcCcccccCCCCc-EE-----ec
Confidence 4678999999999887777776665544456666444444443332 222322221011111111111 00 02
Q ss_pred cCCCcEEEEcHHHH--HHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC--ccHHHH
Q psy1548 230 THNPQIVVGTPGRI--LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS--KEIRPV 305 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l--~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~--~~~~~~ 305 (448)
++ ..|.+.+-..- ..-+. -..++++++||+-.+.+. .+...+........... .+.+|.|.. .....+
T Consensus 75 nG-~~i~~~~~~~~~~~~~~~-----G~~~~~i~iDE~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~s~p~~~~~~~~~~ 146 (384)
T PF03237_consen 75 NG-SRIQFRGADSPDSGDNIR-----GFEYDLIIIDEAAKVPDD-AFSELIRRLRATWGGSI-RMYISTPPNPGGWFYEI 146 (384)
T ss_dssp TS--EEEEES-----SHHHHH-----TS--SEEEEESGGGSTTH-HHHHHHHHHHHCSTT---EEEEEE---SSSHHHHH
T ss_pred Cc-eEEEEecccccccccccc-----ccccceeeeeecccCchH-HHHHHHHhhhhcccCcc-eEEeecCCCCCCceeee
Confidence 33 45666653321 11222 155678999999877554 44444433333332222 224444432 235555
Q ss_pred HHHhcCCC
Q psy1548 306 CKKFMHDP 313 (448)
Q Consensus 306 ~~~~l~~~ 313 (448)
......+.
T Consensus 147 ~~~~~~~~ 154 (384)
T PF03237_consen 147 FQRNLDDD 154 (384)
T ss_dssp HHHHHCTS
T ss_pred eehhhcCC
Confidence 55555444
No 358
>PF02572 CobA_CobO_BtuR: ATP:corrinoid adenosyltransferase BtuR/CobO/CobP; InterPro: IPR003724 ATP:cob(I)alamin (or ATP:corrinoid) adenosyltransferases (2.5.1.17 from EC), catalyse the conversion of cobalamin (vitamin B12) into its coenzyme form, adenosylcobalamin (coenzyme B12) []. Adenosylcobalamin (AdoCbl) is required for the ativity of certain enzymes. AdoCbl contains an adenosyl moiety liganded to the cobalt ion of cobalamin via a covalent Co-C bond, and its synthesis is unique to certain prokaryotes. ATP:cob(I)alamin adenosyltransferases are classed into three groups: CobA-type [], EutT-type [] and PduO-type []. Each of the three enzyme types appears to be specialised for particular AdoCbl-dependent enzymes or for the de novo synthesis AdoCbl. PduO and EutT are distantly related, sharing short conserved motifs, while CobA is evolutionarily unrelated and is an example of convergent evolution. This entry represents the ATP:cob(I)alamin adenosyltransferases CobA (Salmonella typhimurium), CobO (Pseudomonas denitrificans), and ButR (Escherichia coli). There is a high degree of sequence identity between these proteins []. CobA is responsible for attaching the adenosyl moiety from ATP to the cobalt ion of the corrin ring, necessary for the convertion of cobalamin to adenosylcobalamin [, ]. ; GO: 0005524 ATP binding, 0008817 cob(I)yrinic acid a,c-diamide adenosyltransferase activity, 0009236 cobalamin biosynthetic process; PDB: 1G64_A 1G5T_A 1G5R_A.
Probab=93.19 E-value=2.2 Score=37.47 Aligned_cols=141 Identities=18% Similarity=0.259 Sum_probs=64.2
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcC
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTH 231 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~ 231 (448)
+.+-...|-|||.+++=-++..+ ..+.+++++-=.+- ..-......+.. ++++.+...--+-........
T Consensus 6 i~vytG~GKGKTTAAlGlalRA~---G~G~rV~ivQFlKg--~~~~GE~~~l~~-l~~~~~~~~g~~f~~~~~~~~---- 75 (172)
T PF02572_consen 6 IQVYTGDGKGKTTAALGLALRAA---GHGMRVLIVQFLKG--GRYSGELKALKK-LPNVEIERFGKGFVWRMNEEE---- 75 (172)
T ss_dssp EEEEESSSS-HHHHHHHHHHHHH---CTT--EEEEESS----SS--HHHHHHGG-GT--EEEE--TT----GGGHH----
T ss_pred EEEEeCCCCCchHHHHHHHHHHH---hCCCEEEEEEEecC--CCCcCHHHHHHh-CCeEEEEEcCCcccccCCCcH----
Confidence 45667889999987665555443 34557777764443 011122233222 224333222111110000000
Q ss_pred CCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 232 NPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 232 ~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
.+ .......++..+ ..+.-...+++|+||+-..++. ++ ...+..+++..|...-+|+..-.+|+++.+.+.
T Consensus 76 -~~--~~~~~~~~~~a~-~~i~~~~~dlvILDEi~~a~~~-gll~~~~v~~~l~~rp~~~evVlTGR~~~~~l~e~AD 148 (172)
T PF02572_consen 76 -ED--RAAAREGLEEAK-EAISSGEYDLVILDEINYAVDY-GLLSEEEVLDLLENRPESLEVVLTGRNAPEELIEAAD 148 (172)
T ss_dssp -HH--HHHHHHHHHHHH-HHTT-TT-SEEEEETHHHHHHT-TSS-HHHHHHHHHTS-TT-EEEEE-SS--HHHHHH-S
T ss_pred -HH--HHHHHHHHHHHH-HHHhCCCCCEEEEcchHHHhHC-CCccHHHHHHHHHcCCCCeEEEEECCCCCHHHHHhCC
Confidence 00 000111122211 2223456789999999988776 54 566777888888888888888888887776654
No 359
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.18 E-value=0.48 Score=47.22 Aligned_cols=39 Identities=13% Similarity=0.357 Sum_probs=24.9
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.+... .+ ..+.+.+...|....+|+.+
T Consensus 118 ~~~kviIIDEa~~l~~~-a~-naLLk~lEe~~~~~~fIl~t 156 (363)
T PRK14961 118 SRFKVYLIDEVHMLSRH-SF-NALLKTLEEPPQHIKFILAT 156 (363)
T ss_pred CCceEEEEEChhhcCHH-HH-HHHHHHHhcCCCCeEEEEEc
Confidence 45679999999988653 22 33444455555566666654
No 360
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=93.15 E-value=0.28 Score=47.00 Aligned_cols=20 Identities=30% Similarity=0.385 Sum_probs=16.6
Q ss_pred eCcceeeeccCCChhHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~ 167 (448)
.++.+++.||||+|||....
T Consensus 193 ~~~vi~~vGptGvGKTTt~~ 212 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLA 212 (282)
T ss_pred CCeEEEEECCCCCCHHHHHH
Confidence 46788999999999997654
No 361
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=93.14 E-value=0.087 Score=51.36 Aligned_cols=46 Identities=26% Similarity=0.352 Sum_probs=31.9
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
+..+++++++|+|||||| .++-.++..+...+...+++++-.+.||
T Consensus 145 v~~~~~ilI~G~tGSGKT-Tll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 145 VRAHRNILVIGGTGSGKT-TLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred HHcCCeEEEECCCCCCHH-HHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 345789999999999999 4455555544322334477777777776
No 362
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=93.10 E-value=0.45 Score=50.72 Aligned_cols=38 Identities=11% Similarity=0.294 Sum_probs=25.2
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
...+++||||+|+|... . ...+.+.+..-|..+.+|+.
T Consensus 118 g~~KV~IIDEah~Ls~~-a-~NALLKtLEEPp~~v~FIL~ 155 (647)
T PRK07994 118 GRFKVYLIDEVHMLSRH-S-FNALLKTLEEPPEHVKFLLA 155 (647)
T ss_pred CCCEEEEEechHhCCHH-H-HHHHHHHHHcCCCCeEEEEe
Confidence 46789999999988764 3 34444455655666666665
No 363
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=93.08 E-value=0.17 Score=54.78 Aligned_cols=65 Identities=14% Similarity=0.042 Sum_probs=49.1
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. ...+++|.|+.|||||.+...-+...+.. +-...++|+++.|+.-|.++.+.+..+.+
T Consensus 7 Q~~------av~~--~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~ 72 (672)
T PRK10919 7 QQQ------AVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLG 72 (672)
T ss_pred HHH------HHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhC
Confidence 777 5543 24678899999999998866666665543 22345799999999999999998887654
No 364
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.07 E-value=0.55 Score=49.58 Aligned_cols=39 Identities=18% Similarity=0.241 Sum_probs=26.4
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... -...+.+.+...|....+|+.+
T Consensus 117 ~~~KVvIIDEah~Lt~~--A~NALLK~LEEpp~~~~fIL~t 155 (584)
T PRK14952 117 SRYRIFIVDEAHMVTTA--GFNALLKIVEEPPEHLIFIFAT 155 (584)
T ss_pred CCceEEEEECCCcCCHH--HHHHHHHHHhcCCCCeEEEEEe
Confidence 56789999999988663 3344455566666666666655
No 365
>PRK06904 replicative DNA helicase; Validated
Probab=93.05 E-value=0.54 Score=48.53 Aligned_cols=117 Identities=21% Similarity=0.131 Sum_probs=55.4
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKD 224 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 224 (448)
+..|.=+++.|.+|+|||... +-+...+... .+..+++++. ..-..|+...+-.... ++....+ .|..-...+
T Consensus 218 l~~G~LiiIaarPg~GKTafa-lnia~~~a~~-~g~~Vl~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~g~~l~~~e 291 (472)
T PRK06904 218 LQPSDLIIVAARPSMGKTTFA-MNLCENAAMA-SEKPVLVFSL-EMPAEQIMMRMLASLS---RVDQTKIRTGQNLDQQD 291 (472)
T ss_pred cCCCcEEEEEeCCCCChHHHH-HHHHHHHHHh-cCCeEEEEec-cCCHHHHHHHHHHhhC---CCCHHHhccCCCCCHHH
Confidence 344566788999999999644 4333333221 1335666652 2333444433332222 2222222 221111111
Q ss_pred HH-------HHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 225 EE-------YLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 225 ~~-------~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
.. .+... +++.|- |+..+...+++-......++++|||-.+.|.
T Consensus 292 ~~~~~~a~~~l~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 292 WAKISSTVGMFKQK-PNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHHHHHHHHhcC-CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 11 22222 446663 5555554443211111357899999999774
No 366
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=92.87 E-value=0.77 Score=47.68 Aligned_cols=19 Identities=26% Similarity=0.268 Sum_probs=15.7
Q ss_pred cceeeeccCCChhHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l 168 (448)
+.+|++||.|+|||.++.+
T Consensus 44 ~a~Lf~Gp~G~GKTT~Ari 62 (507)
T PRK06645 44 GGYLLTGIRGVGKTTSARI 62 (507)
T ss_pred ceEEEECCCCCCHHHHHHH
Confidence 4689999999999977543
No 367
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=92.87 E-value=1.2 Score=42.09 Aligned_cols=18 Identities=33% Similarity=0.357 Sum_probs=14.7
Q ss_pred cceeeeccCCChhHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~ 167 (448)
..+++.||+|+|||....
T Consensus 44 ~~~~l~G~~G~GKTtl~~ 61 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIR 61 (269)
T ss_pred CEEEEEcCCCCCHHHHHH
Confidence 368899999999996643
No 368
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=92.86 E-value=1.3 Score=38.98 Aligned_cols=52 Identities=17% Similarity=0.273 Sum_probs=40.6
Q ss_pred CCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 255 SLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
..++++|+||+-..++. ++ ...+..+++..|+..-+|+..-..|+.+.+.+.
T Consensus 96 ~~~DlvVLDEi~~A~~~-gli~~~~v~~lL~~rp~~~evVlTGR~~p~~l~e~AD 149 (173)
T TIGR00708 96 PELDLVLLDELTYALKY-GYLDVEEVVEALQERPGHQHVIITGRGCPQDLLELAD 149 (173)
T ss_pred CCCCEEEehhhHHHHHC-CCcCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCc
Confidence 56789999999987775 43 456777888888888888888888887766654
No 369
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=92.86 E-value=0.66 Score=51.80 Aligned_cols=80 Identities=13% Similarity=0.198 Sum_probs=63.0
Q ss_pred CeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCC
Q psy1548 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256 (448)
Q Consensus 180 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 256 (448)
+.+++|+||+.+-+..+.+.++++. |+.++..++|+.+..... ..+.++..+|+|+|. +-...+++.+
T Consensus 660 g~qv~if~n~i~~~e~l~~~L~~~~---p~~~v~~lHG~m~~~eRe~im~~F~~Gk~~ILVaT~------iie~GIDIp~ 730 (926)
T TIGR00580 660 GGQVFYVHNRIESIEKLATQLRELV---PEARIAIAHGQMTENELEEVMLEFYKGEFQVLVCTT------IIETGIDIPN 730 (926)
T ss_pred CCeEEEEECCcHHHHHHHHHHHHhC---CCCeEEEecCCCCHHHHHHHHHHHHcCCCCEEEECC------hhhccccccc
Confidence 4589999999998888877777653 478999999998755443 345677799999996 3456788999
Q ss_pred eeEEEecchhHH
Q psy1548 257 LKHFILDECDKM 268 (448)
Q Consensus 257 i~~lViDEah~l 268 (448)
++++|++.++..
T Consensus 731 v~~VIi~~a~~~ 742 (926)
T TIGR00580 731 ANTIIIERADKF 742 (926)
T ss_pred CCEEEEecCCCC
Confidence 999999999853
No 370
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=92.86 E-value=1.3 Score=45.09 Aligned_cols=59 Identities=20% Similarity=0.194 Sum_probs=30.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEE
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGV 214 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~ 214 (448)
.-+++++++|+|||.+..--+.. +... .+.+++++. +.|.-+.+ +++.++... ++.+..
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~-l~~~-~g~kV~lV~~D~~R~~a~~---QL~~~a~~~-gvp~~~ 160 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYY-LKKK-QGKKVLLVACDLYRPAAIE---QLKVLGQQV-GVPVFA 160 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHHh-CCCeEEEEeccccchHHHH---HHHHHHHhc-CCceEe
Confidence 35789999999999775433333 2211 123455554 34444433 344444433 454433
No 371
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=92.84 E-value=0.6 Score=46.21 Aligned_cols=40 Identities=15% Similarity=0.273 Sum_probs=27.3
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
...+++||||||.|... ....+.+.+...+....++++|.
T Consensus 140 g~~rVviIDeAd~l~~~--aanaLLk~LEEpp~~~~fiLit~ 179 (351)
T PRK09112 140 GNWRIVIIDPADDMNRN--AANAILKTLEEPPARALFILISH 179 (351)
T ss_pred CCceEEEEEchhhcCHH--HHHHHHHHHhcCCCCceEEEEEC
Confidence 45689999999998764 34446666666556666666653
No 372
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.84 E-value=0.46 Score=50.46 Aligned_cols=39 Identities=13% Similarity=0.324 Sum_probs=24.3
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|+|... .+ ..+.+.+..-|....+|+.+
T Consensus 123 g~~KV~IIDEvh~Ls~~-a~-NaLLKtLEEPP~~~~fIL~T 161 (618)
T PRK14951 123 GRFKVFMIDEVHMLTNT-AF-NAMLKTLEEPPEYLKFVLAT 161 (618)
T ss_pred CCceEEEEEChhhCCHH-HH-HHHHHhcccCCCCeEEEEEE
Confidence 46789999999988764 33 23334444445555665544
No 373
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=92.81 E-value=0.29 Score=45.53 Aligned_cols=49 Identities=22% Similarity=0.171 Sum_probs=30.4
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee---ccHHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC---HTRELAFQ 195 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~---Pt~~L~~q 195 (448)
-+..|.-+++.|++|+|||...+--+++..... +..+++++ |..+++..
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~--g~~vly~s~E~~~~~~~~r 60 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQ--GKPVLFFSLEMSKEQLLQR 60 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhC--CCceEEEeCCCCHHHHHHH
Confidence 445678899999999999965443334433321 34677777 44444443
No 374
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.80 E-value=0.41 Score=46.94 Aligned_cols=41 Identities=7% Similarity=0.139 Sum_probs=27.3
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+.+||||||.|... ....+.+.+..-|.+..+|+.|..
T Consensus 105 ~~~kv~iI~~a~~m~~~--aaNaLLK~LEEPp~~~~fiL~t~~ 145 (328)
T PRK05707 105 GGRKVVLIEPAEAMNRN--AANALLKSLEEPSGDTVLLLISHQ 145 (328)
T ss_pred CCCeEEEECChhhCCHH--HHHHHHHHHhCCCCCeEEEEEECC
Confidence 45678999999999773 445555566665556666655443
No 375
>KOG0391|consensus
Probab=92.78 E-value=0.24 Score=54.76 Aligned_cols=74 Identities=23% Similarity=0.292 Sum_probs=62.8
Q ss_pred hHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-----------Cc
Q psy1548 340 EKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-----------KG 406 (448)
Q Consensus 340 ~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~-----------~g 406 (448)
.|+..|..+|+++ .+.++|||....+-.+-|...|.-+|+-..-+.|..+-++|...++.|+... .|
T Consensus 1260 GKLQtLAiLLqQLk~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTrSgg 1339 (1958)
T KOG0391|consen 1260 GKLQTLAILLQQLKSEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTRSGG 1339 (1958)
T ss_pred chHHHHHHHHHHHHhcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEeccCCc
Confidence 4667777777654 4679999999999999999999999999999999999999999999999887 56
Q ss_pred eEEEEec
Q psy1548 407 LAITFAS 413 (448)
Q Consensus 407 ~~I~~~t 413 (448)
++|++..
T Consensus 1340 vGiNLtg 1346 (1958)
T KOG0391|consen 1340 VGINLTG 1346 (1958)
T ss_pred ccccccc
Confidence 6666543
No 376
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.77 E-value=0.48 Score=49.26 Aligned_cols=17 Identities=29% Similarity=0.372 Sum_probs=14.2
Q ss_pred ceeeeccCCChhHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFV 167 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~ 167 (448)
-+|+.||.|+|||.++.
T Consensus 38 a~Lf~GppGtGKTTlA~ 54 (504)
T PRK14963 38 AYLFSGPRGVGKTTTAR 54 (504)
T ss_pred EEEEECCCCCCHHHHHH
Confidence 35999999999997754
No 377
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=92.77 E-value=0.19 Score=56.03 Aligned_cols=45 Identities=20% Similarity=0.426 Sum_probs=42.0
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||++.++|+|+..+..|++|+.|.....|.|.+||++|..
T Consensus 547 ~~VLIsTdvgseGlNlq~a~~VInfDlP~nP~~~eQRIGR~~RiG 591 (956)
T PRK04914 547 AQVLLCSEIGSEGRNFQFASHLVLFDLPFNPDLLEQRIGRLDRIG 591 (956)
T ss_pred ccEEEechhhccCCCcccccEEEEecCCCCHHHHHHHhcccccCC
Confidence 479999999999999999999999999999999999999998843
No 378
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=92.75 E-value=0.76 Score=45.73 Aligned_cols=41 Identities=15% Similarity=0.280 Sum_probs=27.3
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+++||||+|.|.. .....+.+.+...+....+|++|..
T Consensus 140 ~~~kVviIDead~m~~--~aanaLLK~LEepp~~~~~IL~t~~ 180 (365)
T PRK07471 140 GGWRVVIVDTADEMNA--NAANALLKVLEEPPARSLFLLVSHA 180 (365)
T ss_pred CCCEEEEEechHhcCH--HHHHHHHHHHhcCCCCeEEEEEECC
Confidence 5677899999998865 3444555666665556656665544
No 379
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.71 E-value=0.77 Score=46.37 Aligned_cols=40 Identities=10% Similarity=0.169 Sum_probs=24.0
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
+...+++||||+|.|... . ...+.+.+...++...+|+.+
T Consensus 125 ~~~~kvvIIdea~~l~~~-~-~~~LLk~LEep~~~t~~Il~t 164 (397)
T PRK14955 125 KGRYRVYIIDEVHMLSIA-A-FNAFLKTLEEPPPHAIFIFAT 164 (397)
T ss_pred cCCeEEEEEeChhhCCHH-H-HHHHHHHHhcCCCCeEEEEEe
Confidence 456789999999988653 2 233444445444444455443
No 380
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=92.71 E-value=0.8 Score=49.00 Aligned_cols=39 Identities=13% Similarity=0.280 Sum_probs=26.2
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... ....+.+.+...+..+.+|+.+
T Consensus 118 gk~KVIIIDEad~Ls~~--A~NALLKtLEEPp~~v~fILaT 156 (709)
T PRK08691 118 GKYKVYIIDEVHMLSKS--AFNAMLKTLEEPPEHVKFILAT 156 (709)
T ss_pred CCcEEEEEECccccCHH--HHHHHHHHHHhCCCCcEEEEEe
Confidence 45689999999977553 3344555566556677776655
No 381
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.70 E-value=0.61 Score=49.39 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=15.9
Q ss_pred cceeeeccCCChhHHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLA 169 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~ 169 (448)
..+|+.+|.|+|||.++.+-
T Consensus 39 ha~Lf~GPpG~GKTtiAril 58 (624)
T PRK14959 39 PAYLFSGTRGVGKTTIARIF 58 (624)
T ss_pred ceEEEECCCCCCHHHHHHHH
Confidence 35789999999999876443
No 382
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=92.69 E-value=1.9 Score=37.36 Aligned_cols=53 Identities=17% Similarity=0.252 Sum_probs=41.1
Q ss_pred CCCeeEEEecchhHHHhhhh--hHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 254 LSLLKHFILDECDKMLEQLE--MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~--~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
....+++|+||+-..+.. + -...+..+++..|...-+|+.+-.+|+++.+.+.
T Consensus 93 ~~~~dLlVLDEi~~a~~~-gli~~~~v~~ll~~rp~~~evIlTGr~~p~~l~e~AD 147 (159)
T cd00561 93 SGEYDLVILDEINYALGY-GLLDVEEVVDLLKAKPEDLELVLTGRNAPKELIEAAD 147 (159)
T ss_pred cCCCCEEEEechHhHhhC-CCCCHHHHHHHHHcCCCCCEEEEECCCCCHHHHHhCc
Confidence 456789999999977665 4 3567777888888888889988888887766653
No 383
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=92.64 E-value=0.098 Score=51.48 Aligned_cols=44 Identities=20% Similarity=0.271 Sum_probs=30.8
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 193 (448)
+..+++++++||||||||.. +-.++..+.. ..+++.+-.+.||.
T Consensus 159 v~~~~nilI~G~tGSGKTTl-l~aLl~~i~~---~~rivtiEd~~El~ 202 (344)
T PRK13851 159 VVGRLTMLLCGPTGSGKTTM-SKTLISAIPP---QERLITIEDTLELV 202 (344)
T ss_pred HHcCCeEEEECCCCccHHHH-HHHHHcccCC---CCCEEEECCCcccc
Confidence 33578999999999999954 4555555432 33677777777763
No 384
>KOG0738|consensus
Probab=92.60 E-value=0.6 Score=45.93 Aligned_cols=17 Identities=29% Similarity=0.399 Sum_probs=15.1
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+.+|..+|.|+|||+.+
T Consensus 246 kgvLm~GPPGTGKTlLA 262 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLA 262 (491)
T ss_pred ceeeeeCCCCCcHHHHH
Confidence 78999999999999754
No 385
>PRK10867 signal recognition particle protein; Provisional
Probab=92.57 E-value=1.5 Score=44.56 Aligned_cols=58 Identities=19% Similarity=0.188 Sum_probs=31.2
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEE
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVG 213 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~ 213 (448)
.-+++++++|+|||.+..--+.. +... .+.+++++. +.|.-+.. +++.++... ++.+.
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~-l~~~-~G~kV~lV~~D~~R~aa~e---QL~~~a~~~-gv~v~ 160 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKY-LKKK-KKKKVLLVAADVYRPAAIE---QLKTLGEQI-GVPVF 160 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHH-HHHh-cCCcEEEEEccccchHHHH---HHHHHHhhc-CCeEE
Confidence 35788999999999765433332 2222 133455554 45554432 344444443 55543
No 386
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.51 E-value=0.83 Score=48.46 Aligned_cols=39 Identities=18% Similarity=0.281 Sum_probs=26.2
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... -...+.+.+...|....+|+.+
T Consensus 118 ~~~KVvIIdev~~Lt~~--a~naLLk~LEepp~~~~fIl~t 156 (576)
T PRK14965 118 SRYKIFIIDEVHMLSTN--AFNALLKTLEEPPPHVKFIFAT 156 (576)
T ss_pred CCceEEEEEChhhCCHH--HHHHHHHHHHcCCCCeEEEEEe
Confidence 56789999999987653 3345555566656666666544
No 387
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=92.49 E-value=0.77 Score=49.87 Aligned_cols=44 Identities=11% Similarity=0.181 Sum_probs=25.5
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHH
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~ 305 (448)
.-.+++|||+|.+... . . ..++..+ .+.++++.++|-++....+
T Consensus 109 ~~~IL~IDEIh~Ln~~-q-Q---daLL~~l-E~g~IiLI~aTTenp~~~l 152 (725)
T PRK13341 109 KRTILFIDEVHRFNKA-Q-Q---DALLPWV-ENGTITLIGATTENPYFEV 152 (725)
T ss_pred CceEEEEeChhhCCHH-H-H---HHHHHHh-cCceEEEEEecCCChHhhh
Confidence 3457999999987553 1 1 2223322 3456788888765443333
No 388
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=92.45 E-value=0.62 Score=49.19 Aligned_cols=43 Identities=14% Similarity=0.247 Sum_probs=24.7
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
....+++||||+|.|... .+ ..+.+.+...|....+|+ .+|-+
T Consensus 117 ~~~~kViIIDE~~~Lt~~-a~-naLLKtLEepp~~~ifIl-att~~ 159 (559)
T PRK05563 117 EAKYKVYIIDEVHMLSTG-AF-NALLKTLEEPPAHVIFIL-ATTEP 159 (559)
T ss_pred cCCeEEEEEECcccCCHH-HH-HHHHHHhcCCCCCeEEEE-EeCCh
Confidence 356789999999988663 33 333344444444444444 34533
No 389
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=92.39 E-value=1.1 Score=44.74 Aligned_cols=31 Identities=23% Similarity=0.156 Sum_probs=21.6
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhcc
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT 177 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~ 177 (448)
+-.|.-+++.||+|+|||... ..+...+..+
T Consensus 165 ig~Gq~~~IvG~~g~GKTtL~-~~i~~~I~~n 195 (415)
T TIGR00767 165 IGKGQRGLIVAPPKAGKTVLL-QKIAQAITRN 195 (415)
T ss_pred eCCCCEEEEECCCCCChhHHH-HHHHHhhccc
Confidence 345889999999999999653 3344444333
No 390
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=92.37 E-value=0.89 Score=45.35 Aligned_cols=55 Identities=25% Similarity=0.309 Sum_probs=34.0
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+..|.-+++.+++|+|||...+-- ...+.. .+.+++|+.-. +-..|+...+.++.
T Consensus 79 i~~GslvLI~G~pG~GKStLllq~-a~~~a~--~g~~VlYvs~E-Es~~qi~~Ra~rlg 133 (372)
T cd01121 79 LVPGSVILIGGDPGIGKSTLLLQV-AARLAK--RGGKVLYVSGE-ESPEQIKLRADRLG 133 (372)
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHH-HHHHHh--cCCeEEEEECC-cCHHHHHHHHHHcC
Confidence 445678899999999999654333 333222 23478888754 33456665555553
No 391
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=92.34 E-value=0.56 Score=47.74 Aligned_cols=41 Identities=24% Similarity=0.170 Sum_probs=25.4
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+..|.=+++.|++|+|||...+--+.+.... .+..+++++
T Consensus 190 G~~~g~liviag~pg~GKT~~al~ia~~~a~~--~g~~v~~fS 230 (421)
T TIGR03600 190 GLVKGDLIVIGARPSMGKTTLALNIAENVALR--EGKPVLFFS 230 (421)
T ss_pred CCCCCceEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEE
Confidence 44556778999999999996544333333212 233567776
No 392
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=92.21 E-value=0.39 Score=51.99 Aligned_cols=65 Identities=14% Similarity=0.053 Sum_probs=49.2
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. ...+++|.|+.|||||.+..--+...+.. .....++++|+.|+.-+.++.+.+.+..+
T Consensus 6 Q~~------av~~--~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~ 71 (664)
T TIGR01074 6 QQE------AVEY--VTGPCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLG 71 (664)
T ss_pred HHH------HHhC--CCCCEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhC
Confidence 777 5533 35689999999999998876666666543 22445799999999999999998887654
No 393
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.17 E-value=0.17 Score=44.88 Aligned_cols=48 Identities=21% Similarity=0.205 Sum_probs=27.6
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQI 196 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 196 (448)
.+-.++++++.||+|+|||..+. ++...+.. .+..+++ ++..+|...+
T Consensus 43 ~~~~~~~l~l~G~~G~GKThLa~-ai~~~~~~--~g~~v~f-~~~~~L~~~l 90 (178)
T PF01695_consen 43 FIENGENLILYGPPGTGKTHLAV-AIANEAIR--KGYSVLF-ITASDLLDEL 90 (178)
T ss_dssp S-SC--EEEEEESTTSSHHHHHH-HHHHHHHH--TT--EEE-EEHHHHHHHH
T ss_pred CcccCeEEEEEhhHhHHHHHHHH-HHHHHhcc--CCcceeE-eecCceeccc
Confidence 34468899999999999997643 34443333 2334555 4555666553
No 394
>KOG2170|consensus
Probab=92.13 E-value=0.5 Score=44.88 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=35.5
Q ss_pred eEEEecchhHHHhhhhhHHHHHHHHHhCCC-------CCeEEEEeccCCccHHHHHHHhc
Q psy1548 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPH-------TKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 258 ~~lViDEah~l~~~~~~~~~~~~i~~~l~~-------~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
.++|+||+|.|.. +..+.+.-.+.+.|. ..-+|++|.+-..++-+++..+.
T Consensus 180 slFIFDE~DKmp~--gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~~~aL~~~ 237 (344)
T KOG2170|consen 180 SLFIFDEVDKLPP--GLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIARIALENA 237 (344)
T ss_pred ceEEechhhhcCH--hHHHHHhhhhccccccccccccceEEEEEcCCcchHHHHHHHHHH
Confidence 4799999999877 566666666665442 33578999887776665555444
No 395
>KOG1133|consensus
Probab=92.12 E-value=0.089 Score=54.91 Aligned_cols=51 Identities=18% Similarity=0.216 Sum_probs=37.3
Q ss_pred eccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhh
Q psy1548 122 NYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 122 ~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l 174 (448)
+|.+|....+.|.++++. ....+-.|+=.|+.+|||+|||+..+-+++.++
T Consensus 9 ~F~fPy~PYdIQ~~lM~e--lyrvLe~GkIgIfESPTGTGKSLSLiCaaltWL 59 (821)
T KOG1133|consen 9 EFPFPYTPYDIQEDLMRE--LYRVLEEGKIGIFESPTGTGKSLSLICAALTWL 59 (821)
T ss_pred ccCCCCCchhHHHHHHHH--HHHHHhcCCeeeeeCCCCCCchHHHHHHHHHHH
Confidence 355565555559996664 223444689889999999999998887777776
No 396
>PRK08006 replicative DNA helicase; Provisional
Probab=92.09 E-value=1 Score=46.43 Aligned_cols=142 Identities=18% Similarity=0.094 Sum_probs=64.8
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKD 224 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 224 (448)
+..|.=+++.|.+|+|||..++--+.+.... .+..++|++.- .-..|+...+-.... ++....+ .|..+ ..+
T Consensus 221 l~~G~LiiIaarPgmGKTafalnia~~~a~~--~g~~V~~fSlE-M~~~ql~~Rlla~~~---~v~~~~i~~~~l~-~~e 293 (471)
T PRK08006 221 LQPSDLIIVAARPSMGKTTFAMNLCENAAML--QDKPVLIFSLE-MPGEQIMMRMLASLS---RVDQTRIRTGQLD-DED 293 (471)
T ss_pred CCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--cCCeEEEEecc-CCHHHHHHHHHHHhc---CCCHHHhhcCCCC-HHH
Confidence 3345667889999999995543333332222 23356666422 223343333332211 2222112 22222 122
Q ss_pred HH-------HHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh---hhhHHHHHHHHHhCC---
Q psy1548 225 EE-------YLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKMLEQ---LEMRRDVQEIFRSSP--- 286 (448)
Q Consensus 225 ~~-------~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~---~~~~~~~~~i~~~l~--- 286 (448)
+. .+... ..+.|- |+..+...+++-......++++|||=.|.|... ......+..+.+.+.
T Consensus 294 ~~~~~~a~~~~~~~-~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~~~~~~~~r~~ei~~isr~LK~lA 372 (471)
T PRK08006 294 WARISGTMGILLEK-RNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMRVPSLSDNRTLEIAEISRSLKALA 372 (471)
T ss_pred HHHHHHHHHHHHhc-CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHccCCCCCCCcHHHHHHHHHHHHHHH
Confidence 11 12121 345553 455554444321111135789999999977421 012233444433332
Q ss_pred --CCCeEEEEe
Q psy1548 287 --HTKQVMMFS 295 (448)
Q Consensus 287 --~~~q~i~~S 295 (448)
-++.+|++|
T Consensus 373 kel~ipVi~Ls 383 (471)
T PRK08006 373 KELQVPVVALS 383 (471)
T ss_pred HHhCCeEEEEE
Confidence 256677775
No 397
>PRK04195 replication factor C large subunit; Provisional
Probab=92.08 E-value=0.45 Score=49.35 Aligned_cols=18 Identities=28% Similarity=0.412 Sum_probs=15.4
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||...
T Consensus 39 ~~~lLL~GppG~GKTtla 56 (482)
T PRK04195 39 KKALLLYGPPGVGKTSLA 56 (482)
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 467999999999999664
No 398
>KOG0058|consensus
Probab=92.07 E-value=0.24 Score=52.40 Aligned_cols=39 Identities=28% Similarity=0.319 Sum_probs=28.9
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEE
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMM 293 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~ 293 (448)
+++-+.+|+|||-.-+|. .....+++.+..+..++-++.
T Consensus 620 lr~P~VLILDEATSALDa-eSE~lVq~aL~~~~~~rTVlv 658 (716)
T KOG0058|consen 620 LRNPRVLILDEATSALDA-ESEYLVQEALDRLMQGRTVLV 658 (716)
T ss_pred hcCCCEEEEechhhhcch-hhHHHHHHHHHHhhcCCeEEE
Confidence 355678999999988887 777778888877766644443
No 399
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.06 E-value=0.9 Score=47.59 Aligned_cols=39 Identities=13% Similarity=0.273 Sum_probs=27.2
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|+|... ....+.+.+...|....+|+.+
T Consensus 118 g~~kViIIDEa~~ls~~--a~naLLK~LEepp~~v~fIL~T 156 (546)
T PRK14957 118 GRYKVYLIDEVHMLSKQ--SFNALLKTLEEPPEYVKFILAT 156 (546)
T ss_pred CCcEEEEEechhhccHH--HHHHHHHHHhcCCCCceEEEEE
Confidence 45689999999988663 3445556666666677676655
No 400
>KOG0741|consensus
Probab=92.05 E-value=1.2 Score=45.70 Aligned_cols=44 Identities=16% Similarity=0.477 Sum_probs=26.3
Q ss_pred CCeeEEEecchhHHHhhhh----hHH----HHHHHHHhCC-CCCeEEEEeccC
Q psy1548 255 SLLKHFILDECDKMLEQLE----MRR----DVQEIFRSSP-HTKQVMMFSATL 298 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~----~~~----~~~~i~~~l~-~~~q~i~~SAT~ 298 (448)
+.+.++|+|+..++++|.. |.. .+.-+++..| +.++++.+..|=
T Consensus 597 S~lsiivvDdiErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS 649 (744)
T KOG0741|consen 597 SPLSIIVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTS 649 (744)
T ss_pred CcceEEEEcchhhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEeccc
Confidence 4567899999999998822 222 2222334444 355677766653
No 401
>PRK08939 primosomal protein DnaI; Reviewed
Probab=92.05 E-value=1.1 Score=43.36 Aligned_cols=27 Identities=19% Similarity=0.240 Sum_probs=19.4
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhh
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLE 175 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~ 175 (448)
.++.+++.||+|+|||.... ++.+.+.
T Consensus 155 ~~~gl~L~G~~G~GKThLa~-Aia~~l~ 181 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLA-AIANELA 181 (306)
T ss_pred CCCeEEEECCCCCCHHHHHH-HHHHHHH
Confidence 35789999999999996643 4444443
No 402
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=92.04 E-value=0.13 Score=55.27 Aligned_cols=45 Identities=24% Similarity=0.265 Sum_probs=38.8
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCC-Cchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPE-DSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~-~~~~yQ~~~~~~~~~ 142 (448)
..+|+|||+++++|+|.++++.|+++..|. .+..+.|.+||+||.
T Consensus 508 ~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 553 (630)
T TIGR00643 508 EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRG 553 (630)
T ss_pred CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccC
Confidence 348999999999999999999999998775 566677888999983
No 403
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=92.00 E-value=0.26 Score=53.36 Aligned_cols=44 Identities=23% Similarity=0.274 Sum_probs=37.8
Q ss_pred cceeEeeccccCCcccccceeEeeccCCC-Cchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPE-DSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~-~~~~yQ~~~~~~~~~ 142 (448)
..|+|||+++++|+|.++++.|+++..|. .+..+-|.+||+||.
T Consensus 532 ~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~ 576 (681)
T PRK10917 532 IDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRG 576 (681)
T ss_pred CCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCC
Confidence 38999999999999999999999998875 455667788999983
No 404
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=91.97 E-value=0.26 Score=45.11 Aligned_cols=18 Identities=28% Similarity=0.399 Sum_probs=14.4
Q ss_pred cceeeeccCCChhHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~ 167 (448)
.++|+.||.|.|||..+.
T Consensus 51 ~h~lf~GPPG~GKTTLA~ 68 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLAR 68 (233)
T ss_dssp -EEEEESSTTSSHHHHHH
T ss_pred ceEEEECCCccchhHHHH
Confidence 368999999999996543
No 405
>PHA00729 NTP-binding motif containing protein
Probab=91.92 E-value=0.87 Score=41.88 Aligned_cols=75 Identities=9% Similarity=0.082 Sum_probs=35.9
Q ss_pred cEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH----HHHHHHHHhCCCCCeEEEEeccCCccHHHHHHH
Q psy1548 234 QIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR----RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKK 308 (448)
Q Consensus 234 ~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~----~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~ 308 (448)
..++.+.+.+...+....-....++++|+||+=.-.....+. .....+...+.+.++++.+...-+.++...++.
T Consensus 60 ~~~fid~~~Ll~~L~~a~~~~~~~dlLIIDd~G~~~~~~~wh~~~~~~yf~L~~aLrSR~~l~il~~ls~edL~~~Lr~ 138 (226)
T PHA00729 60 NSYFFELPDALEKIQDAIDNDYRIPLIIFDDAGIWLSKYVWYEDYMKTFYKIYALIRTRVSAVIFTTPSPEDLAFYLRE 138 (226)
T ss_pred cEEEEEHHHHHHHHHHHHhcCCCCCEEEEeCCchhhcccchhhhccchHHHHHHHHHhhCcEEEEecCCHHHHHHHHHh
Confidence 455556666655554311112345789999943221110011 122223333344556677766655555555554
No 406
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=91.89 E-value=0.61 Score=44.24 Aligned_cols=29 Identities=28% Similarity=0.416 Sum_probs=25.0
Q ss_pred CccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 362 KSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 362 ~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
.|+.-|+.|++.|++.|..+..-|-+|.+
T Consensus 255 RSV~iae~La~~L~~~~~~v~v~HRdl~k 283 (284)
T PF03668_consen 255 RSVAIAERLAERLREKGYTVVVRHRDLEK 283 (284)
T ss_pred cHHHHHHHHHHHHHhcCCcceEEcCCCCC
Confidence 34677999999999999999999998864
No 407
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=91.72 E-value=4.2 Score=35.55 Aligned_cols=54 Identities=13% Similarity=0.223 Sum_probs=27.7
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHh
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~ 309 (448)
..+++|+|..............+..+........-++.++|..+.+..+....+
T Consensus 82 ~~d~viiDt~g~~~~~~~~l~~l~~l~~~~~~~~~~lVv~~~~~~~~~~~~~~~ 135 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEELKKIKRVVKPDEVLLVVDAMTGQDAVNQAKAF 135 (173)
T ss_pred CCCEEEEECcccchhhHHHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHH
Confidence 456788888875421113334444444333344456666666554444444444
No 408
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=91.69 E-value=0.16 Score=54.86 Aligned_cols=46 Identities=30% Similarity=0.406 Sum_probs=38.8
Q ss_pred hccceeEeeccccCCcccc---------cceeEeeccCCCCchhhhhhhccccccc
Q psy1548 97 DCWRILVATNLFGRGMDIE---------RVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 97 ~~~~~~~~~~~~~~~~d~~---------~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..|.|.||||++|||+|++ .+..|++|..|+.-.+ -+..||+||..
T Consensus 471 ~~g~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG 525 (762)
T TIGR03714 471 QKGAVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQG 525 (762)
T ss_pred CCCeEEEEccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCC
Confidence 3469999999999999999 8899999999987444 77789998844
No 409
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=91.66 E-value=0.17 Score=48.04 Aligned_cols=42 Identities=24% Similarity=0.330 Sum_probs=29.8
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
.+.+++++|+||||||.. +-.++..+... ..+++++-.+.|+
T Consensus 126 ~~~~ili~G~tGSGKTT~-l~all~~i~~~--~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTL-LNALLEEIPPE--DERIVTIEDPPEL 167 (270)
T ss_dssp TTEEEEEEESTTSSHHHH-HHHHHHHCHTT--TSEEEEEESSS-S
T ss_pred cceEEEEECCCccccchH-HHHHhhhcccc--ccceEEeccccce
Confidence 368999999999999955 45666665444 3477777766665
No 410
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=91.64 E-value=0.34 Score=52.01 Aligned_cols=126 Identities=16% Similarity=0.157 Sum_probs=71.5
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
-+++.|.-|=|||.+.-+.+........ ..+++|.+|+.+=++.+...+.+-...+ +.+-.+..... ........
T Consensus 233 ~~vlTAdRGRGKSA~lGi~~~~~~~~~~-~~~iiVTAP~~~nv~~Lf~fa~~~l~~l-g~~~~v~~d~~---g~~~~~~~ 307 (758)
T COG1444 233 ALVLTADRGRGKSAALGIALAAAARLAG-SVRIIVTAPTPANVQTLFEFAGKGLEFL-GYKRKVAPDAL---GEIREVSG 307 (758)
T ss_pred eEEEEcCCCCcHhHHHhHHHHHHHHhcC-CceEEEeCCCHHHHHHHHHHHHHhHHHh-CCccccccccc---cceeeecC
Confidence 6788999999999988877643322222 5689999999998877766555433333 32211111110 00000010
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
....|=+.+|.... .. -+++|+|||=.+.- +.+..++... +.++||.|+..
T Consensus 308 ~~~~i~y~~P~~a~---------~~-~DllvVDEAAaIpl-----plL~~l~~~~----~rv~~sTTIhG 358 (758)
T COG1444 308 DGFRIEYVPPDDAQ---------EE-ADLLVVDEAAAIPL-----PLLHKLLRRF----PRVLFSTTIHG 358 (758)
T ss_pred CceeEEeeCcchhc---------cc-CCEEEEehhhcCCh-----HHHHHHHhhc----CceEEEeeecc
Confidence 11235556665432 11 56899999985532 3344444443 35888999754
No 411
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=91.61 E-value=0.46 Score=50.08 Aligned_cols=126 Identities=11% Similarity=0.064 Sum_probs=71.3
Q ss_pred chhhhhhhccccccceeeee--CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH-HHHHHhhc
Q psy1548 129 SDTYLHRVARAGRFGTKAVL--GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS-KEYERFSK 205 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~--g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~-~~~~~~~~ 205 (448)
.-+||.+ .+..+.. -+.|.+..++-+|||.+.+..+...+...+. .+|++.||.++|.+.. ..+..+..
T Consensus 17 ~~Py~~e------imd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~--~~l~v~Pt~~~a~~~~~~rl~Pmi~ 88 (557)
T PF05876_consen 17 RTPYLRE------IMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSIDQDPG--PMLYVQPTDDAAKDFSKERLDPMIR 88 (557)
T ss_pred CChhHHH------HHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEEeCCC--CEEEEEEcHHHHHHHHHHHHHHHHH
Confidence 3456888 4444443 2689999999999999655555445544443 5999999999998765 45555555
Q ss_pred cCCCceEEEEE---cCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHh
Q psy1548 206 YMSNIKVGVFF---GGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 206 ~~~~~~v~~~~---g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~ 270 (448)
..|.++-.+-- ...........+. + ..+.++.... -..+.-..++++++||+|.+..
T Consensus 89 ~sp~l~~~~~~~~~~~~~~t~~~k~f~-g-g~l~~~ga~S------~~~l~s~~~r~~~~DEvD~~p~ 148 (557)
T PF05876_consen 89 ASPVLRRKLSPSKSRDSGNTILYKRFP-G-GFLYLVGANS------PSNLRSRPARYLLLDEVDRYPD 148 (557)
T ss_pred hCHHHHHHhCchhhcccCCchhheecC-C-CEEEEEeCCC------CcccccCCcCEEEEechhhccc
Confidence 44433311111 0000011111111 2 2343333211 1233346688999999998843
No 412
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=91.57 E-value=1.2 Score=47.09 Aligned_cols=39 Identities=13% Similarity=0.227 Sum_probs=23.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|.. +....+...+...|...-+|+++
T Consensus 118 ~~~KVIIIDEad~Lt~--~A~NaLLKtLEEPp~~tvfIL~T 156 (605)
T PRK05896 118 FKYKVYIIDEAHMLST--SAWNALLKTLEEPPKHVVFIFAT 156 (605)
T ss_pred CCcEEEEEechHhCCH--HHHHHHHHHHHhCCCcEEEEEEC
Confidence 3467899999998755 33344555555555555444443
No 413
>PRK02362 ski2-like helicase; Provisional
Probab=91.55 E-value=0.17 Score=55.40 Aligned_cols=72 Identities=22% Similarity=0.347 Sum_probs=50.8
Q ss_pred cCCCCHHHHHHHhhc---c--ceeEeeccccCCcccccceeEee----cc-----CCCCchhhhhhhccccccceeeeeC
Q psy1548 84 DFLLKPEILRAIVDC---W--RILVATNLFGRGMDIERVNIVFN----YD-----MPEDSDTYLHRVARAGRFGTKAVLG 149 (448)
Q Consensus 84 ~~~~~~~~~~~~~~~---~--~~~~~~~~~~~~~d~~~~~~v~~----~~-----~p~~~~~yQ~~~~~~~~~~~~~~~g 149 (448)
.-++++...+.+.+. | +|+|||+.+++|+|.|..+.|++ |+ .|.+..+|+|.+|||||.-.. -.|
T Consensus 310 Hagl~~~eR~~ve~~Fr~G~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d-~~G 388 (737)
T PRK02362 310 HAGLSREHRELVEDAFRDRLIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLD-PYG 388 (737)
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCC-CCc
Confidence 335555544444333 2 89999999999999999998886 54 577889999999999994321 125
Q ss_pred cceeeec
Q psy1548 150 MDILCQA 156 (448)
Q Consensus 150 ~~vli~a 156 (448)
..++++.
T Consensus 389 ~~ii~~~ 395 (737)
T PRK02362 389 EAVLLAK 395 (737)
T ss_pred eEEEEec
Confidence 5555553
No 414
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=91.52 E-value=0.15 Score=42.06 Aligned_cols=55 Identities=42% Similarity=0.782 Sum_probs=45.0
Q ss_pred HHHHHHHhhcc-ceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 89 PEILRAIVDCW-RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 89 ~~~~~~~~~~~-~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..+...+.+.. .+.++|+.++.|+|.+....++.+..|.....+.|.+||++|..
T Consensus 68 ~~~~~~f~~~~~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~ 123 (131)
T cd00079 68 EEVLKDFREGEIVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAG 123 (131)
T ss_pred HHHHHHHHcCCCcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCC
Confidence 33444444433 79999999999999999999999999999988899999998843
No 415
>KOG0339|consensus
Probab=91.50 E-value=0.2 Score=50.61 Aligned_cols=106 Identities=31% Similarity=0.392 Sum_probs=73.6
Q ss_pred hhhhhccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccce
Q psy1548 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144 (448)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~ 144 (448)
......++..+...+..-..-.....|.+.-.....|.|+|+.+.+|.|.++.+.|++|+....++.|-+.+||.||+..
T Consensus 485 ~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrtgRag~ 564 (731)
T KOG0339|consen 485 AANLKLKGFNVSLLHGDKDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRTGRAGE 564 (731)
T ss_pred HHHhccccceeeeecCchhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhcccccc
Confidence 44455556566655554444444445555555667999999999999999999999999999999999999999999554
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhcc
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETT 177 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~ 177 (448)
. | +.-..- +-|-..|.-++++.+..-
T Consensus 565 k---G--vayTlv--TeKDa~fAG~LVnnLe~a 590 (731)
T KOG0339|consen 565 K---G--VAYTLV--TEKDAEFAGHLVNNLEGA 590 (731)
T ss_pred c---c--eeeEEe--chhhHHHhhHHHHHHhhc
Confidence 3 2 111111 234456777777776543
No 416
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=91.42 E-value=0.87 Score=44.98 Aligned_cols=38 Identities=13% Similarity=0.256 Sum_probs=21.9
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
..-+++|+||+|.+... . ...+...+...|....+|+.
T Consensus 116 ~~~~vviidea~~l~~~-~-~~~Ll~~le~~~~~~~lIl~ 153 (355)
T TIGR02397 116 GKYKVYIIDEVHMLSKS-A-FNALLKTLEEPPEHVVFILA 153 (355)
T ss_pred CCceEEEEeChhhcCHH-H-HHHHHHHHhCCccceeEEEE
Confidence 45678999999988553 2 22333344444445444443
No 417
>PRK14701 reverse gyrase; Provisional
Probab=91.42 E-value=0.14 Score=60.17 Aligned_cols=40 Identities=18% Similarity=0.278 Sum_probs=34.4
Q ss_pred hhccceeEee----ccccCCccccc-ceeEeeccCCC---Cchhhhhh
Q psy1548 96 VDCWRILVAT----NLFGRGMDIER-VNIVFNYDMPE---DSDTYLHR 135 (448)
Q Consensus 96 ~~~~~~~~~~----~~~~~~~d~~~-~~~v~~~~~p~---~~~~yQ~~ 135 (448)
.....|+|+| ++++||||+|+ |++|+||+.|. +++.|++.
T Consensus 376 ~G~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~~~ 423 (1638)
T PRK14701 376 EGEIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLEDPT 423 (1638)
T ss_pred cCCCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcccc
Confidence 3445899999 57889999998 99999999999 88777766
No 418
>PRK08840 replicative DNA helicase; Provisional
Probab=91.39 E-value=1.3 Score=45.69 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=23.9
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+..|.=+++.|.+|+|||...+ -+....... .+..+++++
T Consensus 213 G~~~g~LiviaarPg~GKTafal-nia~~~a~~-~~~~v~~fS 253 (464)
T PRK08840 213 GLQGSDLIIVAARPSMGKTTFAM-NLCENAAMD-QDKPVLIFS 253 (464)
T ss_pred CCCCCceEEEEeCCCCchHHHHH-HHHHHHHHh-CCCeEEEEe
Confidence 34446678889999999996543 333322211 233566665
No 419
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=91.37 E-value=0.22 Score=45.93 Aligned_cols=14 Identities=29% Similarity=0.598 Sum_probs=12.2
Q ss_pred eeeeccCCChhHHH
Q psy1548 152 ILCQAKSGMGKTAV 165 (448)
Q Consensus 152 vli~apTGsGKT~~ 165 (448)
++|.|+.|+|||..
T Consensus 1 ~vv~G~pGsGKSt~ 14 (234)
T PF01443_consen 1 IVVHGVPGSGKSTL 14 (234)
T ss_pred CEEEcCCCCCHHHH
Confidence 47899999999964
No 420
>PRK04841 transcriptional regulator MalT; Provisional
Probab=91.31 E-value=1.5 Score=49.19 Aligned_cols=42 Identities=14% Similarity=0.348 Sum_probs=33.9
Q ss_pred eEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 258 ~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
-++|||++|.+-+. .....+..+++..|.+..+++.|-+.|+
T Consensus 123 ~~lvlDD~h~~~~~-~~~~~l~~l~~~~~~~~~lv~~sR~~~~ 164 (903)
T PRK04841 123 LYLVIDDYHLITNP-EIHEAMRFFLRHQPENLTLVVLSRNLPP 164 (903)
T ss_pred EEEEEeCcCcCCCh-HHHHHHHHHHHhCCCCeEEEEEeCCCCC
Confidence 47999999987554 6677888889999999999888877543
No 421
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=91.30 E-value=0.2 Score=49.15 Aligned_cols=41 Identities=20% Similarity=0.295 Sum_probs=28.6
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
.+++++++|+||||||.. +-.++..+.. ..+++.+=-+.||
T Consensus 159 ~~~nili~G~tgSGKTTl-l~aL~~~ip~---~~ri~tiEd~~El 199 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTF-TNAALREIPA---IERLITVEDAREI 199 (332)
T ss_pred cCCcEEEECCCCCCHHHH-HHHHHhhCCC---CCeEEEecCCCcc
Confidence 478999999999999954 4556665533 3366666555555
No 422
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=91.30 E-value=2.3 Score=39.32 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=33.7
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+-.|.-+++.+++|+|||.....-+...+. .+.+++++.--.. ..++.+.+..+.
T Consensus 22 ~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~---~g~~~~y~~~e~~-~~~~~~~~~~~g 76 (234)
T PRK06067 22 IPFPSLILIEGDHGTGKSVLSQQFVYGALK---QGKKVYVITTENT-SKSYLKQMESVK 76 (234)
T ss_pred CcCCcEEEEECCCCCChHHHHHHHHHHHHh---CCCEEEEEEcCCC-HHHHHHHHHHCC
Confidence 334678899999999999654433333332 2446777765433 345555566553
No 423
>KOG2228|consensus
Probab=91.24 E-value=2.5 Score=41.02 Aligned_cols=44 Identities=23% Similarity=0.263 Sum_probs=25.4
Q ss_pred HHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 241 GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 241 ~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
..++..++.+....+.--.+|+||+|..... ..-..+-.++...
T Consensus 122 ~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-~rQtllYnlfDis 165 (408)
T KOG2228|consen 122 SKLLEALKKGDETTSGKVIFILDEFDLFAPH-SRQTLLYNLFDIS 165 (408)
T ss_pred HHHHHHHhcCCCCCCceEEEEeehhhccccc-hhhHHHHHHHHHH
Confidence 4566667665554444457999999955443 3333344444443
No 424
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=91.23 E-value=1.2 Score=47.23 Aligned_cols=39 Identities=18% Similarity=0.275 Sum_probs=25.4
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
++-+++|+|||..-+|. .....+.+.+..+.+++.++..
T Consensus 482 ~~~~ILILDEaTSalD~-~tE~~I~~~l~~l~~~rT~iiI 520 (567)
T COG1132 482 RNPPILILDEATSALDT-ETEALIQDALKKLLKGRTTLII 520 (567)
T ss_pred cCCCEEEEeccccccCH-HhHHHHHHHHHHHhcCCEEEEE
Confidence 44467899999887776 6666666666655455444443
No 425
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.17 E-value=0.89 Score=47.64 Aligned_cols=39 Identities=13% Similarity=0.302 Sum_probs=26.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... . ...+.+.+...|....+|+.+
T Consensus 118 ~~~kVvIIDEad~ls~~-a-~naLLK~LEepp~~~~fIL~t 156 (527)
T PRK14969 118 GRFKVYIIDEVHMLSKS-A-FNAMLKTLEEPPEHVKFILAT 156 (527)
T ss_pred CCceEEEEcCcccCCHH-H-HHHHHHHHhCCCCCEEEEEEe
Confidence 56789999999988663 3 334445555556667677655
No 426
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=91.05 E-value=1.4 Score=43.91 Aligned_cols=92 Identities=15% Similarity=0.052 Sum_probs=46.6
Q ss_pred CCcccccceeEeeccCCCCchhhhhhhccc-------cccceee---eeCcceeeeccCCChhHHHHHHHHHHhhhccCC
Q psy1548 110 RGMDIERVNIVFNYDMPEDSDTYLHRVARA-------GRFGTKA---VLGMDILCQAKSGMGKTAVFVLATLQQLETTDS 179 (448)
Q Consensus 110 ~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~-------~~~~~~~---~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~ 179 (448)
+|.++.......+|+..+++.+.....-.. .|++..+ -.|...+|.||.|+|||.. +--+.+.+..+..
T Consensus 120 ng~~~~~~~~r~~f~~l~p~~p~~R~~le~~~~~~~~~rvID~l~PIGkGQR~lIvgppGvGKTTL-aK~Ian~I~~nhF 198 (416)
T PRK09376 120 NGEDPEKARNRPLFENLTPLYPNERLRLETGNPEDLSTRIIDLIAPIGKGQRGLIVAPPKAGKTVL-LQNIANSITTNHP 198 (416)
T ss_pred CCCCHHHhcCCCCcccCCCCChhhcccccCCCCcccceeeeeeecccccCceEEEeCCCCCChhHH-HHHHHHHHHhhcC
Confidence 345555555555566555554444442111 1233322 3478999999999999954 3334454443322
Q ss_pred CeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 180 NVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 180 ~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
... ++++-..+-...+.+..+.+
T Consensus 199 Dv~-~~VvLIgER~~EVtdiqrsI 221 (416)
T PRK09376 199 EVH-LIVLLIDERPEEVTDMQRSV 221 (416)
T ss_pred CeE-EEEEEeCCchhHHHHHHHHh
Confidence 323 33333333333444444444
No 427
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=91.02 E-value=0.099 Score=50.57 Aligned_cols=50 Identities=28% Similarity=0.307 Sum_probs=32.7
Q ss_pred cceeeeeC-cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 142 FGTKAVLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 142 ~~~~~~~g-~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
.+..+..+ .|+|+++.||||||.. +-.++..+... -++|.+--|.||--+
T Consensus 165 ~L~~av~~r~NILisGGTGSGKTTl-LNal~~~i~~~---eRvItiEDtaELql~ 215 (355)
T COG4962 165 FLRRAVGIRCNILISGGTGSGKTTL-LNALSGFIDSD---ERVITIEDTAELQLA 215 (355)
T ss_pred HHHHHHhhceeEEEeCCCCCCHHHH-HHHHHhcCCCc---ccEEEEeehhhhccC
Confidence 44444444 5999999999999954 33333333322 278888888887443
No 428
>PRK05748 replicative DNA helicase; Provisional
Probab=91.02 E-value=1 Score=46.20 Aligned_cols=116 Identities=20% Similarity=0.125 Sum_probs=54.9
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQK 223 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~ 223 (448)
.+..|.-++|.|++|+|||... +-++...... .+..+++++ ...-..|+...+-.... ++....+ .|... ..
T Consensus 199 G~~~G~livIaarpg~GKT~~a-l~ia~~~a~~-~g~~v~~fS-lEms~~~l~~R~l~~~~---~v~~~~i~~~~l~-~~ 271 (448)
T PRK05748 199 GLQPNDLIIVAARPSVGKTAFA-LNIAQNVATK-TDKNVAIFS-LEMGAESLVMRMLCAEG---NIDAQRLRTGQLT-DD 271 (448)
T ss_pred CCCCCceEEEEeCCCCCchHHH-HHHHHHHHHh-CCCeEEEEe-CCCCHHHHHHHHHHHhc---CCCHHHhhcCCCC-HH
Confidence 3445677899999999999554 4444333221 123455554 23334444444432111 2111111 12222 11
Q ss_pred hHH-------HHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 224 DEE-------YLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 224 ~~~-------~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
+.. .+.. ..+.|. |+..+...++.-......++++|||=.+.|-
T Consensus 272 e~~~~~~a~~~l~~--~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 272 DWPKLTIAMGSLSD--APIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 211 2222 235443 4455544433211111257899999999774
No 429
>PRK07004 replicative DNA helicase; Provisional
Probab=91.01 E-value=0.55 Score=48.34 Aligned_cols=142 Identities=18% Similarity=0.151 Sum_probs=64.0
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKD 224 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 224 (448)
+..|.=+++.|.+|+|||... +-+...+.... +..+++++ ...-..|+...+-.... ++....+ .|..+ ..+
T Consensus 210 ~~~g~liviaarpg~GKT~~a-l~ia~~~a~~~-~~~v~~fS-lEM~~~ql~~R~la~~~---~v~~~~i~~g~l~-~~e 282 (460)
T PRK07004 210 MHGGELIIVAGRPSMGKTAFS-MNIGEYVAVEY-GLPVAVFS-MEMPGTQLAMRMLGSVG---RLDQHRMRTGRLT-DED 282 (460)
T ss_pred CCCCceEEEEeCCCCCccHHH-HHHHHHHHHHc-CCeEEEEe-CCCCHHHHHHHHHHhhc---CCCHHHHhcCCCC-HHH
Confidence 444667889999999999554 33333322111 23455554 22222333333221111 1211111 12222 222
Q ss_pred H-------HHHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh---hhhHHHHHHHHHhCC---
Q psy1548 225 E-------EYLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKMLEQ---LEMRRDVQEIFRSSP--- 286 (448)
Q Consensus 225 ~-------~~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~---~~~~~~~~~i~~~l~--- 286 (448)
. ..+.. ..+.|. |+..+...+++-......+++||||=.+.|... ......+..+.+.+.
T Consensus 283 ~~~~~~a~~~l~~--~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~~~~~~~~r~~ei~~Isr~LK~lA 360 (460)
T PRK07004 283 WPKLTHAVQKMSE--AQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMSGSSQGENRATEISEISRSLKSLA 360 (460)
T ss_pred HHHHHHHHHHHhc--CCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhccCCCCCCcHHHHHHHHHHHHHHHH
Confidence 2 22222 346553 444444433221111234789999999987522 012333444443332
Q ss_pred --CCCeEEEEec
Q psy1548 287 --HTKQVMMFSA 296 (448)
Q Consensus 287 --~~~q~i~~SA 296 (448)
.++.++++|.
T Consensus 361 kel~ipVi~lsQ 372 (460)
T PRK07004 361 KELDVPVIALSQ 372 (460)
T ss_pred HHhCCeEEEEec
Confidence 2566776654
No 430
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.99 E-value=0.82 Score=48.81 Aligned_cols=38 Identities=13% Similarity=0.307 Sum_probs=23.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
...+++||||||.|... ....+.+.+..-+....+|+.
T Consensus 120 ~~~KViIIDEad~Lt~~--a~naLLK~LEePp~~tvfIL~ 157 (620)
T PRK14948 120 ARWKVYVIDECHMLSTA--AFNALLKTLEEPPPRVVFVLA 157 (620)
T ss_pred CCceEEEEECccccCHH--HHHHHHHHHhcCCcCeEEEEE
Confidence 45689999999988653 333444445544444444443
No 431
>PLN02165 adenylate isopentenyltransferase
Probab=90.99 E-value=0.19 Score=48.97 Aligned_cols=39 Identities=15% Similarity=0.105 Sum_probs=29.5
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~ 167 (448)
...|......|++ +.-.-..|+-++|.||||+|||..+.
T Consensus 23 ~~~~~~~~~~~~~------~~~~~~~g~iivIiGPTGSGKStLA~ 61 (334)
T PLN02165 23 LPPPRSVVTMTSV------AMEQNCKDKVVVIMGATGSGKSRLSV 61 (334)
T ss_pred CCCCccccccccc------ccccCCCCCEEEEECCCCCcHHHHHH
Confidence 5667777777888 54444457789999999999997654
No 432
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.91 E-value=1.6 Score=46.53 Aligned_cols=40 Identities=10% Similarity=0.190 Sum_probs=24.6
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
+..-+++||||+|.|... . ...+.+.+...|...-+|+.+
T Consensus 125 ~~~~KVvIIdEad~Lt~~-a-~naLLK~LEePp~~tv~IL~t 164 (620)
T PRK14954 125 KGRYRVYIIDEVHMLSTA-A-FNAFLKTLEEPPPHAIFIFAT 164 (620)
T ss_pred cCCCEEEEEeChhhcCHH-H-HHHHHHHHhCCCCCeEEEEEe
Confidence 456789999999988653 2 334444455545555555544
No 433
>KOG0742|consensus
Probab=90.89 E-value=1.4 Score=43.68 Aligned_cols=29 Identities=14% Similarity=0.015 Sum_probs=19.8
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEEe
Q psy1548 384 IHRGMTQEERLKKYQEFKDFHKGLAITFA 412 (448)
Q Consensus 384 lh~~~~~~eR~~~l~~F~~g~~g~~I~~~ 412 (448)
...||+-.+-.+.+..++..--|-.=++.
T Consensus 572 kTeGfSGREiakLva~vQAavYgsedcvL 600 (630)
T KOG0742|consen 572 KTEGFSGREIAKLVASVQAAVYGSEDCVL 600 (630)
T ss_pred hccCCcHHHHHHHHHHHHHHHhcccchhh
Confidence 35678888888888888877654333333
No 434
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.89 E-value=0.76 Score=53.72 Aligned_cols=58 Identities=17% Similarity=0.137 Sum_probs=39.4
Q ss_pred hhhhhccccccceeeeeC--cceeeeccCCChhHHHH--HHHHHHhhhccCCCeEEEEeeccHHHHHHH
Q psy1548 132 YLHRVARAGRFGTKAVLG--MDILCQAKSGMGKTAVF--VLATLQQLETTDSNVYVLVMCHTRELAFQI 196 (448)
Q Consensus 132 yQ~~~~~~~~~~~~~~~g--~~vli~apTGsGKT~~~--~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~ 196 (448)
-|.+ ++..++.+ +-++|+|..|+|||.+. ++.++..+. ...+..++.++||-.-+..+
T Consensus 839 ~Qr~------Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~l~-e~~g~~V~glAPTgkAa~~L 900 (1623)
T PRK14712 839 GQRA------ATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNMLP-ESERPRVVGLGPTHRAVGEM 900 (1623)
T ss_pred HHHH------HHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHHHh-hccCceEEEEechHHHHHHH
Confidence 3888 77777754 67899999999999763 222333222 22345788899998766553
No 435
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.86 E-value=0.29 Score=46.49 Aligned_cols=27 Identities=22% Similarity=0.383 Sum_probs=20.6
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccC
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTD 178 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~ 178 (448)
=+||.||||||||.. +.++++.+....
T Consensus 127 LILVTGpTGSGKSTT-lAamId~iN~~~ 153 (353)
T COG2805 127 LILVTGPTGSGKSTT-LAAMIDYINKHK 153 (353)
T ss_pred eEEEeCCCCCcHHHH-HHHHHHHHhccC
Confidence 478999999999965 566777765543
No 436
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=90.81 E-value=1.3 Score=44.01 Aligned_cols=111 Identities=13% Similarity=0.134 Sum_probs=61.5
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
...+.+.+.|+.|.|||...-+ ..+.+ +.+.+.++ +..+...++.+.+..+.+ +..
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~-f~~~l-p~~~k~R~----HFh~Fm~~vh~~l~~~~~------------~~~------ 115 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDL-FYDSL-PIKRKRRV----HFHEFMLDVHSRLHQLRG------------QDD------ 115 (362)
T ss_pred CCCceEEEECCCCCchhHHHHH-HHHhC-Cccccccc----cccHHHHHHHHHHHHHhC------------CCc------
Confidence 3468899999999999975322 22222 22222222 556777777777777641 110
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEEeccCCcc
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMFSATLSKE 301 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~SAT~~~~ 301 (448)
- -+ .+.+.+ .+...+|++||+| +.+. +-.-.+..++..+ ....-+++.|-+.|++
T Consensus 116 --------~---l~-~va~~l------~~~~~lLcfDEF~-V~Di-aDAmil~rLf~~l~~~gvvlVaTSN~~P~~ 171 (362)
T PF03969_consen 116 --------P---LP-QVADEL------AKESRLLCFDEFQ-VTDI-ADAMILKRLFEALFKRGVVLVATSNRPPED 171 (362)
T ss_pred --------c---HH-HHHHHH------HhcCCEEEEeeee-ccch-hHHHHHHHHHHHHHHCCCEEEecCCCChHH
Confidence 0 01 111112 2345579999999 3332 2233344444433 4567788888887764
No 437
>KOG1016|consensus
Probab=90.77 E-value=2 Score=45.82 Aligned_cols=147 Identities=12% Similarity=0.158 Sum_probs=85.2
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC--------CceEEEEEcCcc
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS--------NIKVGVFFGGLP 220 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~--------~~~v~~~~g~~~ 220 (448)
|--+|+.-..|.|||+.. +.....+.+.-....+|+|+|-..|-+ |+..+..|...++ ...+.++..+..
T Consensus 282 GFGCILAHSMGLGKTlQV-isF~diflRhT~AKtVL~ivPiNTlQN-WlsEfnmWiP~y~sD~~vrpR~F~vf~LnD~~K 359 (1387)
T KOG1016|consen 282 GFGCILAHSMGLGKTLQV-ISFSDIFLRHTKAKTVLVIVPINTLQN-WLSEFNMWIPKYFSDTGVRPRSFEVFLLNDGVK 359 (1387)
T ss_pred CcceeeeeccccCceeEE-eehhHHHhhcCccceEEEEEehHHHHH-HHHHhhhhcCCCcccCCCccceeEEEEecCchh
Confidence 446788888999999763 444444444445568999999988754 4556776665431 245555555543
Q ss_pred cHHhHHH-----HhcCCCcEEEEcHHHHHHHHHC-----C-------C-----Cc-------------------CCCeeE
Q psy1548 221 IQKDEEY-----LKTHNPQIVVGTPGRILALVRN-----K-------K-----LN-------------------LSLLKH 259 (448)
Q Consensus 221 ~~~~~~~-----l~~~~~~IlV~Tp~~l~~~l~~-----~-------~-----~~-------------------~~~i~~ 259 (448)
.-.+... ...| .|+..-.+.+.-++.. + . +. -..-++
T Consensus 360 T~~~Rakvi~~Wv~~G--GVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i~~d~eD~~qe~~~li~~AL~~PGPDl 437 (1387)
T KOG1016|consen 360 TFDQRAKVIEQWVQTG--GVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFIKDDSEDQRQEAYSLIRSALLEPGPDL 437 (1387)
T ss_pred hHHHHHHHHHHHhccC--CEEEehHHHHHHHHHhcccccCCccccccccCCcccCCchhhhHHHHHHHHHHHhcCCCCCe
Confidence 3222221 2233 4555556544222211 0 0 00 012467
Q ss_pred EEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccH
Q psy1548 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI 302 (448)
Q Consensus 260 lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~ 302 (448)
+|+||-|++-.- ...+...++.+...+++++....+-+.+
T Consensus 438 VICDEGHrIKN~---~A~iS~aLk~IrtrRRiVLTGYPLQNNL 477 (1387)
T KOG1016|consen 438 VICDEGHRIKNI---TAEISMALKAIRTRRRIVLTGYPLQNNL 477 (1387)
T ss_pred EEecCCceeccc---hHHHHHHHHHhhhceeEEEeccccccch
Confidence 999999988553 3444445666666778888877776653
No 438
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=90.71 E-value=1.8 Score=45.52 Aligned_cols=21 Identities=24% Similarity=0.314 Sum_probs=17.8
Q ss_pred eeeeCcceeeeccCCChhHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~ 165 (448)
.+..|+-+.+.||+|+|||..
T Consensus 357 ~i~~G~~vaIvG~SGsGKSTL 377 (529)
T TIGR02868 357 DLPPGERVAILGPSGSGKSTL 377 (529)
T ss_pred EEcCCCEEEEECCCCCCHHHH
Confidence 445689999999999999964
No 439
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=90.68 E-value=0.19 Score=55.18 Aligned_cols=53 Identities=30% Similarity=0.362 Sum_probs=42.0
Q ss_pred HHHHHhhccceeEeeccccCCcccc---ccee-----EeeccCCCCchhhhhhhccccccc
Q psy1548 91 ILRAIVDCWRILVATNLFGRGMDIE---RVNI-----VFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~d~~---~~~~-----v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
+...-...+.|.||||++|||+|+. .|.. |++...|...+-|-|..|||||..
T Consensus 639 Iia~AG~~g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqG 699 (1025)
T PRK12900 639 IVAEAGQKGAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQG 699 (1025)
T ss_pred HHHhcCCCCeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCC
Confidence 3333445579999999999999999 5543 377888888888999999999933
No 440
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=90.62 E-value=2 Score=44.97 Aligned_cols=125 Identities=14% Similarity=0.137 Sum_probs=78.6
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHH----HHhhccCCCceEEEEEcCcccHHh
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEY----ERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~----~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
.|-.+...|---|||+ ++.|++..+...-.+.++.|+++-+--++-+.+++ ++|.. .-.+...-+
T Consensus 202 QkaTVFLVPRRHGKTW-f~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~---~~~vi~~k~------- 270 (668)
T PHA03372 202 QKATVFLVPRRHGKTW-FIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFP---RKHTIENKD------- 270 (668)
T ss_pred ccceEEEecccCCcee-hHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcC---ccceeeecC-------
Confidence 3566788999999995 57888888877777889999999988776655544 34432 111211111
Q ss_pred HHHHhcCCCcEEEEcHHHH-----HHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEEecc
Q psy1548 225 EEYLKTHNPQIVVGTPGRI-----LALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMFSAT 297 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l-----~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~SAT 297 (448)
-.|.+.-|+.- ...-+.+.+.-.+..++++||||-+.. ..+..++..+ .+++++|..|.|
T Consensus 271 --------~tI~~s~pg~Kst~~fasc~n~NsiRGQ~fnll~VDEA~FI~~-----~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 271 --------NVISIDHRGAKSTALFASCYNTNSIRGQNFHLLLVDEAHFIKK-----DAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred --------cEEEEecCCCcceeeehhhccCccccCCCCCEEEEehhhccCH-----HHHHHhhhhhcccCceEEEEeCC
Confidence 12444433321 111233455567788999999995533 2344455444 467788888887
No 441
>cd01126 TraG_VirD4 The TraG/TraD/VirD4 family are bacterial conjugation proteins involved in type IV secretion. These proteins aid the transfer of DNA from the plasmid into the host bacterial chromosome. They contain an ATP binding domain. VirD4 is involved in DNA transfer to plant cells and is required for virulence.
Probab=90.60 E-value=0.19 Score=50.52 Aligned_cols=48 Identities=23% Similarity=0.162 Sum_probs=37.3
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
++++.||||||||.++++|-+-.. ...++|+=|--++........+..
T Consensus 1 H~lv~g~tGsGKt~~~viP~ll~~-----~~s~vv~D~Kge~~~~t~~~r~~~ 48 (384)
T cd01126 1 HVLVFAPTRSGKGVGFVIPNLLTW-----PGSVVVLDPKGENFELTSEHRRAL 48 (384)
T ss_pred CeeEecCCCCCCccEEEccchhcC-----CCCEEEEccchhHHHHHHHHHHHc
Confidence 578999999999999988876542 236888889999987766655543
No 442
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.55 E-value=0.21 Score=47.79 Aligned_cols=21 Identities=29% Similarity=0.314 Sum_probs=17.2
Q ss_pred eeCcceeeeccCCChhHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~ 167 (448)
+...|+++.+|||||||+.+.
T Consensus 95 L~KSNILLiGPTGsGKTlLAq 115 (408)
T COG1219 95 LSKSNILLIGPTGSGKTLLAQ 115 (408)
T ss_pred eeeccEEEECCCCCcHHHHHH
Confidence 345689999999999998653
No 443
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=90.54 E-value=0.36 Score=48.03 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=26.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
+..++++||||||||.. +-.++..+.......+++.+--..|
T Consensus 149 ~GlilI~G~TGSGKTT~-l~al~~~i~~~~~~~~IvtiEdp~E 190 (372)
T TIGR02525 149 AGLGLICGETGSGKSTL-AASIYQHCGETYPDRKIVTYEDPIE 190 (372)
T ss_pred CCEEEEECCCCCCHHHH-HHHHHHHHHhcCCCceEEEEecCch
Confidence 45789999999999955 4556666543333335555544433
No 444
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.52 E-value=0.82 Score=48.63 Aligned_cols=39 Identities=15% Similarity=0.263 Sum_probs=23.3
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEE
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMF 294 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~ 294 (448)
+...+++||||+|.|... ....+.+.+...+....+|+.
T Consensus 118 ~~~~kVvIIDEa~~L~~~--a~naLLk~LEepp~~tv~Il~ 156 (585)
T PRK14950 118 LARYKVYIIDEVHMLSTA--AFNALLKTLEEPPPHAIFILA 156 (585)
T ss_pred cCCeEEEEEeChHhCCHH--HHHHHHHHHhcCCCCeEEEEE
Confidence 356789999999987653 233344444554445444443
No 445
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=90.52 E-value=0.36 Score=43.64 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=23.5
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
++++||||||||... ..++..+.... +.+++.+....+
T Consensus 4 ilI~GptGSGKTTll-~~ll~~~~~~~-~~~i~t~e~~~E 41 (198)
T cd01131 4 VLVTGPTGSGKSTTL-AAMIDYINKNK-THHILTIEDPIE 41 (198)
T ss_pred EEEECCCCCCHHHHH-HHHHHHhhhcC-CcEEEEEcCCcc
Confidence 689999999999663 44555554332 235555554434
No 446
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=90.47 E-value=0.47 Score=44.17 Aligned_cols=55 Identities=15% Similarity=0.125 Sum_probs=36.7
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
+..|..+++.||+|+|||...+--+...+.. +-.++|++ +.+-..++.+.+..+.
T Consensus 18 ~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~---ge~~lyvs-~ee~~~~i~~~~~~~g 72 (237)
T TIGR03877 18 IPERNVVLLSGGPGTGKSIFSQQFLWNGLQM---GEPGIYVA-LEEHPVQVRRNMAQFG 72 (237)
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHHHHHHc---CCcEEEEE-eeCCHHHHHHHHHHhC
Confidence 3357889999999999997654434444422 34677777 4455667777676654
No 447
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=90.46 E-value=0.19 Score=49.93 Aligned_cols=40 Identities=25% Similarity=0.538 Sum_probs=33.0
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAG 140 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~ 140 (448)
...|+|||++++||+|++.+ .|+ +. |.+.+.|-|.+||+|
T Consensus 318 ~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 318 QFDILLGTSTVDVGVDFKRD-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred cCCEEEEecHHhcccCCCCc-eEE-EC-CCCHHHHhhhcccCC
Confidence 35799999999999999876 555 44 888989999988865
No 448
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=90.44 E-value=0.29 Score=49.84 Aligned_cols=26 Identities=38% Similarity=0.535 Sum_probs=20.0
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhcc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETT 177 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~ 177 (448)
=+|+.||||||||.. +..+++.+...
T Consensus 260 liLvTGPTGSGKTTT-LY~~L~~ln~~ 285 (500)
T COG2804 260 LILVTGPTGSGKTTT-LYAALSELNTP 285 (500)
T ss_pred EEEEeCCCCCCHHHH-HHHHHHHhcCC
Confidence 378999999999965 67777776544
No 449
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=90.41 E-value=1.9 Score=42.05 Aligned_cols=58 Identities=10% Similarity=0.187 Sum_probs=34.8
Q ss_pred EEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 235 IVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
|-|-....+.+.+..... ....+++|||+||.|.. .....+.+.+..-| +..+|++|.
T Consensus 104 I~id~ir~i~~~l~~~p~-~~~~kVvII~~ae~m~~--~aaNaLLK~LEEPp-~~~fILi~~ 161 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPL-EAPRKVVVIEDAETMNE--AAANALLKTLEEPG-NGTLILIAP 161 (314)
T ss_pred CcHHHHHHHHHHHccCcc-cCCceEEEEEchhhcCH--HHHHHHHHHHhCCC-CCeEEEEEC
Confidence 444344444444544333 25678999999999876 34455555666655 665665554
No 450
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=90.37 E-value=0.21 Score=54.97 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=37.3
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCc------------------hhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDS------------------DTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~------------------~~yQ~~~~~~~~~ 142 (448)
.+|.||||++++|||.++|+.|+|+..|... ..|.|.+|||||.
T Consensus 263 rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~ 324 (819)
T TIGR01970 263 RKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQASATQRAGRAGRL 324 (819)
T ss_pred eEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECHHHHHhhhhhcCCC
Confidence 4899999999999999999999999877532 1367889999984
No 451
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=90.35 E-value=1.4 Score=43.75 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.8
Q ss_pred cceeeeccCCChhHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l 168 (448)
.++|+-||.|+|||..+-+
T Consensus 49 ~SmIl~GPPG~GKTTlA~l 67 (436)
T COG2256 49 HSMILWGPPGTGKTTLARL 67 (436)
T ss_pred ceeEEECCCCCCHHHHHHH
Confidence 4899999999999976543
No 452
>PF02534 T4SS-DNA_transf: Type IV secretory system Conjugative DNA transfer; InterPro: IPR003688 This entry represents TraG proteins and their homologues. These proteins contain a P-loop and walker-B site for nucleotide binding. TraG is essential for DNA transfer in bacterial conjugation. These proteins are thought to mediate interactions between the DNA-processing (Dtr) and the mating pair formation (Mpf) systems [, ].; GO: 0009291 unidirectional conjugation, 0016020 membrane
Probab=90.34 E-value=0.32 Score=50.29 Aligned_cols=49 Identities=22% Similarity=0.254 Sum_probs=38.5
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.++++.||||||||..+++|.+-. . + + .+||.=|--+|.......+++.
T Consensus 45 ~h~lvig~tgSGKt~~~viP~ll~--~-~-~-s~iV~D~KgEl~~~t~~~r~~~ 93 (469)
T PF02534_consen 45 THVLVIGPTGSGKTTSFVIPNLLN--Y-P-G-SMIVTDPKGELYEKTAGYRKKR 93 (469)
T ss_pred eEEEEEeCCCCCccceeeHhHHHh--c-c-C-CEEEEECCCcHHHHHHHHHHHC
Confidence 479999999999999999997643 1 2 2 5888889999988777666654
No 453
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=90.33 E-value=3.6 Score=40.12 Aligned_cols=41 Identities=12% Similarity=0.210 Sum_probs=29.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+++|||+||.|.. .....+.+.+..-|.++.+|+.|..
T Consensus 112 g~~kV~iI~~ae~m~~--~AaNaLLKtLEEPp~~~~fiL~~~~ 152 (319)
T PRK08769 112 GIAQVVIVDPADAINR--AACNALLKTLEEPSPGRYLWLISAQ 152 (319)
T ss_pred CCcEEEEeccHhhhCH--HHHHHHHHHhhCCCCCCeEEEEECC
Confidence 4678999999999976 3445555566766677777777654
No 454
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=90.31 E-value=0.9 Score=49.74 Aligned_cols=65 Identities=17% Similarity=0.153 Sum_probs=49.2
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. ...+++|.|+.|||||.+..--+...+... -..-++|+++-|+.-|..+.+.+..+.+
T Consensus 9 Q~~------av~~--~~g~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~ 74 (726)
T TIGR01073 9 QRE------AVKT--TEGPLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLG 74 (726)
T ss_pred HHH------HHhC--CCCCEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhc
Confidence 888 6643 346899999999999988666665555432 2334799999999999999988887754
No 455
>COG2109 BtuR ATP:corrinoid adenosyltransferase [Coenzyme metabolism]
Probab=90.31 E-value=6.6 Score=34.88 Aligned_cols=52 Identities=17% Similarity=0.296 Sum_probs=40.0
Q ss_pred CCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 255 SLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
..++++|+||....+.. ++ ...+..+++.-|....+|+..-..|+.+.+.+.
T Consensus 121 ~~ydlviLDEl~~al~~-g~l~~eeV~~~l~~kP~~~~vIiTGr~ap~~lie~AD 174 (198)
T COG2109 121 GKYDLVILDELNYALRY-GLLPLEEVVALLKARPEHTHVIITGRGAPPELIELAD 174 (198)
T ss_pred CCCCEEEEehhhHHHHc-CCCCHHHHHHHHhcCCCCcEEEEECCCCCHHHHHHHH
Confidence 35778999999988775 43 566777788778888888888778888777654
No 456
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=90.24 E-value=4 Score=36.92 Aligned_cols=40 Identities=15% Similarity=0.152 Sum_probs=26.6
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeecc
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 189 (448)
..|.-+.+.||+|+|||...+-.+.+... .+.+++++.-.
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~~~---~g~~v~yi~~e 49 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNAAR---QGKKVVYIDTE 49 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHh---CCCeEEEEECC
Confidence 34677899999999999765544443332 23467777654
No 457
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=90.17 E-value=0.22 Score=54.82 Aligned_cols=44 Identities=25% Similarity=0.481 Sum_probs=37.3
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCc------------------hhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDS------------------DTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~------------------~~yQ~~~~~~~~~ 142 (448)
.+|.||||++.+|+|.++++.|+|+..+... ..|.|.+|||||.
T Consensus 266 rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~ 327 (812)
T PRK11664 266 RKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRISQASMTQRAGRAGRL 327 (812)
T ss_pred eEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeechhhhhhhccccCCC
Confidence 4899999999999999999999997766432 2578899999984
No 458
>KOG1131|consensus
Probab=90.16 E-value=0.64 Score=47.25 Aligned_cols=86 Identities=16% Similarity=0.089 Sum_probs=47.6
Q ss_pred cccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeeccCCChhHHHHHHHHHHhhhccC-CCeEEEEeecc
Q psy1548 112 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMCHT 189 (448)
Q Consensus 112 ~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~Pt 189 (448)
++..++.-.|+|+.-.|- |.+-++ -+.. +-.+.+.++..|+|+|||.+.+--++......+ ...+.++-.-|
T Consensus 3 ~~id~l~v~FPY~~iYPE---Q~~YM~---elKrsLDakGh~llEMPSGTGKTvsLLSli~aYq~~~p~~~~KliYCSRT 76 (755)
T KOG1131|consen 3 FYIDDLLVYFPYDYIYPE---QYEYMR---ELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAYQLHYPDEHRKLIYCSRT 76 (755)
T ss_pred eeecCeeEecCCcccCHH---HHHHHH---HHHHhhccCCcEEEECCCCCCcchHHHHHHHHHHHhCCcccceEEEecCc
Confidence 344555555666554444 554222 2222 334678999999999999775444443323333 33455665555
Q ss_pred HHHHHHHHHHHHHh
Q psy1548 190 RELAFQISKEYERF 203 (448)
Q Consensus 190 ~~L~~q~~~~~~~~ 203 (448)
..-......+++.+
T Consensus 77 vpEieK~l~El~~l 90 (755)
T KOG1131|consen 77 VPEIEKALEELKRL 90 (755)
T ss_pred chHHHHHHHHHHHH
Confidence 55555555555554
No 459
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=90.07 E-value=1.1 Score=52.95 Aligned_cols=58 Identities=16% Similarity=0.099 Sum_probs=39.3
Q ss_pred hhhhhhccccccceeeeeC--cceeeeccCCChhHHHHHHHHHHhhh--ccCCCeEEEEeeccHHHHHH
Q psy1548 131 TYLHRVARAGRFGTKAVLG--MDILCQAKSGMGKTAVFVLATLQQLE--TTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 131 ~yQ~~~~~~~~~~~~~~~g--~~vli~apTGsGKT~~~~l~~l~~l~--~~~~~~~~lil~Pt~~L~~q 195 (448)
+-|.+ ++..++.+ +-++|+|..|+|||... -.++..+. ....+..++.++||-.-+..
T Consensus 970 ~~Q~~------Av~~il~s~dr~~~I~G~AGTGKTT~l-~~v~~~~~~l~~~~~~~V~glAPTgrAAk~ 1031 (1747)
T PRK13709 970 SGQRA------ATRMILESTDRFTVVQGYAGVGKTTQF-RAVMSAVNTLPESERPRVVGLGPTHRAVGE 1031 (1747)
T ss_pred HHHHH------HHHHHHhCCCcEEEEEeCCCCCHHHHH-HHHHHHHHHhhcccCceEEEECCcHHHHHH
Confidence 33888 88777775 56899999999999663 23333322 12234578889999876654
No 460
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=90.03 E-value=0.6 Score=48.42 Aligned_cols=58 Identities=21% Similarity=0.141 Sum_probs=41.8
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhcc---CCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
.++-++|+|..|||||.+++--+...+... -....+||+.|.+-+..-+.+.+-.++.
T Consensus 225 k~~ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VLPeLGe 285 (747)
T COG3973 225 KNKILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVLPELGE 285 (747)
T ss_pred CCCeEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhchhhcc
Confidence 466789999999999988765443333221 1233499999999998888888777654
No 461
>PRK07414 cob(I)yrinic acid a,c-diamide adenosyltransferase; Validated
Probab=89.97 E-value=9.6 Score=33.67 Aligned_cols=52 Identities=13% Similarity=0.300 Sum_probs=40.7
Q ss_pred CCeeEEEecchhHHHhhhhh--HHHHHHHHHhCCCCCeEEEEeccCCccHHHHHH
Q psy1548 255 SLLKHFILDECDKMLEQLEM--RRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCK 307 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~--~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~ 307 (448)
..++++|+||+-..++. ++ ...+..+++..|+..-+|+..-..|+++.+.+.
T Consensus 114 ~~~dlvVLDEi~~Al~~-gli~~eeVl~~L~~rp~~~evILTGR~~p~~Lie~AD 167 (178)
T PRK07414 114 GRYSLVVLDELSLAIQF-GLIPETEVLEFLEKRPSHVDVILTGPEMPESLLAIAD 167 (178)
T ss_pred CCCCEEEEehhHHHHHC-CCccHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhCC
Confidence 56788999999988776 54 566777888888888888888888887766543
No 462
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=89.90 E-value=0.86 Score=42.98 Aligned_cols=141 Identities=20% Similarity=0.170 Sum_probs=68.6
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec---cHHHHHHHHHHHHHhhccCCCceEEEEEcCcccH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH---TRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQ 222 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P---t~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~ 222 (448)
+..|.=+++.|++|.|||...+--+.+..... +..++|++. ..+++..+.... + ++....+..+.-..
T Consensus 16 ~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~~~--~~~vly~SlEm~~~~l~~R~la~~---s----~v~~~~i~~g~l~~ 86 (259)
T PF03796_consen 16 LRPGELTVIAARPGVGKTAFALQIALNAALNG--GYPVLYFSLEMSEEELAARLLARL---S----GVPYNKIRSGDLSD 86 (259)
T ss_dssp B-TT-EEEEEESTTSSHHHHHHHHHHHHHHTT--SSEEEEEESSS-HHHHHHHHHHHH---H----TSTHHHHHCCGCHH
T ss_pred CCcCcEEEEEecccCCchHHHHHHHHHHHHhc--CCeEEEEcCCCCHHHHHHHHHHHh---h----cchhhhhhccccCH
Confidence 33456688999999999966554444444322 357888874 344433332222 1 11111111111111
Q ss_pred Hh-------HHHHhcCCCcEEE-E----cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh---hhhHHHHHHHHHhCC-
Q psy1548 223 KD-------EEYLKTHNPQIVV-G----TPGRILALVRNKKLNLSLLKHFILDECDKMLEQ---LEMRRDVQEIFRSSP- 286 (448)
Q Consensus 223 ~~-------~~~l~~~~~~IlV-~----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~---~~~~~~~~~i~~~l~- 286 (448)
.+ ...+... .+.| . |++.+.+.+..-......+++||||-.|.+... .+.+..+..+.+.+.
T Consensus 87 ~e~~~~~~~~~~l~~~--~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~~~~~~~~~~~~~~i~~~Lk~ 164 (259)
T PF03796_consen 87 EEFERLQAAAEKLSDL--PLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKSEDSSDNRRQEIGEISRELKA 164 (259)
T ss_dssp HHHHHHHHHHHHHHTS--EEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBTSCSSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhC--cEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcCCCCCCCHHHHHHHHHHHHHH
Confidence 11 1123332 3433 3 445565555432222267899999999977542 123444444433321
Q ss_pred ----CCCeEEEEecc
Q psy1548 287 ----HTKQVMMFSAT 297 (448)
Q Consensus 287 ----~~~q~i~~SAT 297 (448)
.++.++++|..
T Consensus 165 lA~~~~i~vi~~sQl 179 (259)
T PF03796_consen 165 LAKELNIPVIALSQL 179 (259)
T ss_dssp HHHHHTSEEEEEEEB
T ss_pred HHHHcCCeEEEcccc
Confidence 25667776654
No 463
>PRK10689 transcription-repair coupling factor; Provisional
Probab=89.89 E-value=2.7 Score=48.25 Aligned_cols=80 Identities=10% Similarity=0.192 Sum_probs=62.0
Q ss_pred CeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCC
Q psy1548 180 NVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSL 256 (448)
Q Consensus 180 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~ 256 (448)
+.+++|+||+.+-+..+.+.+.+.. |+.++..++|+.+..... ..+.++..+|+|+|. +-...+++.+
T Consensus 809 ~gqv~vf~n~i~~ie~la~~L~~~~---p~~~v~~lHG~m~q~eRe~im~~Fr~Gk~~VLVaTd------IierGIDIP~ 879 (1147)
T PRK10689 809 GGQVYYLYNDVENIQKAAERLAELV---PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTT------IIETGIDIPT 879 (1147)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHhC---CCCcEEEEeCCCCHHHHHHHHHHHHhcCCCEEEECc------hhhccccccc
Confidence 4589999999998888777777654 477889999998755433 345667799999995 3456788999
Q ss_pred eeEEEecchhHH
Q psy1548 257 LKHFILDECDKM 268 (448)
Q Consensus 257 i~~lViDEah~l 268 (448)
++++|++.++++
T Consensus 880 v~~VIi~~ad~f 891 (1147)
T PRK10689 880 ANTIIIERADHF 891 (1147)
T ss_pred CCEEEEecCCCC
Confidence 999999999854
No 464
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=89.89 E-value=3.8 Score=38.17 Aligned_cols=32 Identities=25% Similarity=0.247 Sum_probs=22.2
Q ss_pred cceeeeeCc-ceeeeccCCChhHHHHHHHHHHhh
Q psy1548 142 FGTKAVLGM-DILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 142 ~~~~~~~g~-~vli~apTGsGKT~~~~l~~l~~l 174 (448)
+-+.+..|+ -+.++++-|||||...- +++..+
T Consensus 43 l~~~i~d~qg~~~vtGevGsGKTv~~R-al~~s~ 75 (269)
T COG3267 43 LHAAIADGQGILAVTGEVGSGKTVLRR-ALLASL 75 (269)
T ss_pred HHHHHhcCCceEEEEecCCCchhHHHH-HHHHhc
Confidence 344555565 67899999999998765 444443
No 465
>KOG0743|consensus
Probab=89.76 E-value=0.29 Score=48.97 Aligned_cols=64 Identities=27% Similarity=0.418 Sum_probs=44.0
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
|+.+|+.+.+++++.+.+.+.- .....-.+|....|+|++ +--|+-||
T Consensus 196 HpstF~TlaMd~~~K~~I~~Dl------------------------~~F~k~k~~YkrvGkawK--------RGYLLYGP 243 (457)
T KOG0743|consen 196 HPSTFETLAMDPDLKERIIDDL------------------------DDFIKGKDFYKRVGKAWK--------RGYLLYGP 243 (457)
T ss_pred CCCCccccccChhHHHHHHHHH------------------------HHHHhcchHHHhcCcchh--------ccceeeCC
Confidence 5578999999999988887653 111222344777666554 56788999
Q ss_pred CCChhHHHHHHHHHHhh
Q psy1548 158 SGMGKTAVFVLATLQQL 174 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l 174 (448)
+|+||| .++.++.+.+
T Consensus 244 PGTGKS-S~IaAmAn~L 259 (457)
T KOG0743|consen 244 PGTGKS-SFIAAMANYL 259 (457)
T ss_pred CCCCHH-HHHHHHHhhc
Confidence 999999 4455555555
No 466
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=89.71 E-value=1.9 Score=44.08 Aligned_cols=40 Identities=23% Similarity=0.157 Sum_probs=24.2
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
+..|.=+++.|++|+|||... +-+...+... .+..+++++
T Consensus 192 ~~~G~l~vi~g~pg~GKT~~~-l~~a~~~a~~-~g~~vl~~S 231 (434)
T TIGR00665 192 LQPSDLIILAARPSMGKTAFA-LNIAENAAIK-EGKPVAFFS 231 (434)
T ss_pred CCCCeEEEEEeCCCCChHHHH-HHHHHHHHHh-CCCeEEEEe
Confidence 444677899999999999554 3333332221 133566665
No 467
>PRK13897 type IV secretion system component VirD4; Provisional
Probab=89.70 E-value=0.38 Score=51.02 Aligned_cols=49 Identities=27% Similarity=0.087 Sum_probs=40.2
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.++++.||||||||..+++|-+-.. +..++|+=|--|+........++.
T Consensus 159 ~hvLviapTgSGKg~g~VIPnLL~~-----~~S~VV~DpKGEl~~~Ta~~R~~~ 207 (606)
T PRK13897 159 QHALLFAPTGSGKGVGFVIPNLLFW-----EDSVVVHDIKLENYELTSGWREKQ 207 (606)
T ss_pred ceEEEEcCCCCCcceEEehhhHHhC-----CCCEEEEeCcHHHHHHHHHHHHHC
Confidence 5899999999999999999987653 235888889999998877666654
No 468
>KOG1513|consensus
Probab=89.59 E-value=0.26 Score=52.28 Aligned_cols=133 Identities=17% Similarity=0.249 Sum_probs=76.9
Q ss_pred eeeeccC--CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEE----cCcccHHhH
Q psy1548 152 ILCQAKS--GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFF----GGLPIQKDE 225 (448)
Q Consensus 152 vli~apT--GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~----g~~~~~~~~ 225 (448)
.||-... |-|.|.+- .|+..... +..++|++.-+..|-.+..+.++.+... ++.|..+. +..+.. ..
T Consensus 292 fLiGDGAGVGKGRTvAg--iIfeNyLk--GRKrAlW~SVSsDLKfDAERDL~DigA~--~I~V~alnK~KYakIss~-en 364 (1300)
T KOG1513|consen 292 FLIGDGAGVGKGRTVAG--IIFENYLK--GRKRALWFSVSSDLKFDAERDLRDIGAT--GIAVHALNKFKYAKISSK-EN 364 (1300)
T ss_pred eeeccCcccCCCceeEE--EEehhhhc--ccceeEEEEeccccccchhhchhhcCCC--Cccceehhhccccccccc-cc
Confidence 3444444 44555442 23333333 3348999999999998888888887643 56655442 111111 11
Q ss_pred HHHhcCCCcEEEEcHHHHH---------------HHHHCCCCcCCCeeEEEecchhHHHhh--------hhhHHHHHHHH
Q psy1548 226 EYLKTHNPQIVVGTPGRIL---------------ALVRNKKLNLSLLKHFILDECDKMLEQ--------LEMRRDVQEIF 282 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~---------------~~l~~~~~~~~~i~~lViDEah~l~~~--------~~~~~~~~~i~ 282 (448)
...+ -.|+++|...|. +++..-.-++ =..||+||||+--.. ...+..+..+-
T Consensus 365 ~n~k---rGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~f--eGvIvfDECHkAKNL~p~~~~k~TKtG~tVLdLQ 439 (1300)
T KOG1513|consen 365 TNTK---RGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDF--EGVIVFDECHKAKNLVPTAGAKSTKTGKTVLDLQ 439 (1300)
T ss_pred CCcc---ceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhcc--ceeEEehhhhhhcccccccCCCcCcccHhHHHHH
Confidence 1122 359999976553 2222111112 246999999976431 23566777777
Q ss_pred HhCCCCCeEEEEecc
Q psy1548 283 RSSPHTKQVMMFSAT 297 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT 297 (448)
+.+| +.+++..|||
T Consensus 440 k~LP-~ARVVYASAT 453 (1300)
T KOG1513|consen 440 KKLP-NARVVYASAT 453 (1300)
T ss_pred HhCC-CceEEEeecc
Confidence 7776 5678999999
No 469
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=89.58 E-value=0.34 Score=52.03 Aligned_cols=44 Identities=27% Similarity=0.516 Sum_probs=39.3
Q ss_pred cceeEeeccccCCcccccceeEeecc-----CCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYD-----MPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~-----~p~~~~~yQ~~~~~~~~~ 142 (448)
..|+|||+.+++|+|.+++..|+.++ .|.....|-|.+|||||.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~ 541 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 541 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCC
Confidence 36788899999999999999999877 788888899999999994
No 470
>PTZ00293 thymidine kinase; Provisional
Probab=89.48 E-value=2.8 Score=38.12 Aligned_cols=40 Identities=15% Similarity=0.156 Sum_probs=25.6
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
|+=-++.||+++|||.- ++-.+..... .+.+++++-|...
T Consensus 4 G~i~vi~GpMfSGKTte-LLr~i~~y~~--ag~kv~~~kp~~D 43 (211)
T PTZ00293 4 GTISVIIGPMFSGKTTE-LMRLVKRFTY--SEKKCVVIKYSKD 43 (211)
T ss_pred eEEEEEECCCCChHHHH-HHHHHHHHHH--cCCceEEEEeccc
Confidence 44567899999999954 3333443332 2346888888653
No 471
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=89.42 E-value=0.53 Score=46.49 Aligned_cols=42 Identities=14% Similarity=0.222 Sum_probs=27.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
+..++++||||||||.. +-.++..+... .+.+++.+-...++
T Consensus 122 ~g~ili~G~tGSGKTT~-l~al~~~i~~~-~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 122 RGLILVTGPTGSGKSTT-LASMIDYINKN-AAGHIITIEDPIEY 163 (343)
T ss_pred CcEEEEECCCCCCHHHH-HHHHHHhhCcC-CCCEEEEEcCChhh
Confidence 57899999999999965 34455555432 23356666555544
No 472
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=89.36 E-value=2 Score=46.43 Aligned_cols=39 Identities=15% Similarity=0.268 Sum_probs=23.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||||.|... ....+...+...|....+|+.+
T Consensus 117 g~~KV~IIDEa~~LT~~--A~NALLKtLEEPP~~tifILaT 155 (725)
T PRK07133 117 SKYKIYIIDEVHMLSKS--AFNALLKTLEEPPKHVIFILAT 155 (725)
T ss_pred CCCEEEEEEChhhCCHH--HHHHHHHHhhcCCCceEEEEEc
Confidence 56789999999987653 3333444455545555445443
No 473
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=89.19 E-value=2.4 Score=41.55 Aligned_cols=41 Identities=15% Similarity=0.277 Sum_probs=27.6
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
....+++||||+|.|.. .....+.+.+..-|++..+|+.|.
T Consensus 108 ~~~~kvviI~~a~~~~~--~a~NaLLK~LEEPp~~~~~Il~t~ 148 (329)
T PRK08058 108 ESNKKVYIIEHADKMTA--SAANSLLKFLEEPSGGTTAILLTE 148 (329)
T ss_pred ccCceEEEeehHhhhCH--HHHHHHHHHhcCCCCCceEEEEeC
Confidence 35678999999998866 344455556666566666666443
No 474
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=89.03 E-value=7.3 Score=37.99 Aligned_cols=56 Identities=14% Similarity=0.277 Sum_probs=30.0
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhC------CCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSS------PHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l------~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
.+.+++++|=+-++.........+..+.+.. .+..-++.++||...+....+..+.
T Consensus 195 ~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g~~~~~~a~~f~ 256 (318)
T PRK10416 195 RGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTGQNALSQAKAFH 256 (318)
T ss_pred CCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCChHHHHHHHHHH
Confidence 4456777777765532213334444444322 2334578889997655434445443
No 475
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=88.96 E-value=2.9 Score=45.16 Aligned_cols=68 Identities=16% Similarity=0.158 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 343 KKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 343 ~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..+..++...+ ++++||++|.+..+.+++.++..... ....+|..+. ...++.|+.+..+ .+++++..
T Consensus 469 ~~i~~~~~~~~-~~~lvlF~Sy~~l~~~~~~~~~~~~~~~v~~q~~~~~---~~~l~~f~~~~~~-~~lv~~gs 537 (654)
T COG1199 469 AYLREILKASP-GGVLVLFPSYEYLKRVAERLKDERSTLPVLTQGEDER---EELLEKFKASGEG-LILVGGGS 537 (654)
T ss_pred HHHHHHHhhcC-CCEEEEeccHHHHHHHHHHHhhcCccceeeecCCCcH---HHHHHHHHHhcCC-eEEEeecc
Confidence 34444455444 48999999999999999999987653 3455555444 4889999887765 66666653
No 476
>PRK14873 primosome assembly protein PriA; Provisional
Probab=88.95 E-value=2.2 Score=45.91 Aligned_cols=66 Identities=9% Similarity=0.092 Sum_probs=56.2
Q ss_pred chHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhC-C-CcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 339 NEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQ-N-FPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 339 ~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~-g-~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
..|.+....++... .++++||.++....+..+...|++. | ..+..+|++++..+|.+.....++|+
T Consensus 171 SGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G~ 240 (665)
T PRK14873 171 EDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRGQ 240 (665)
T ss_pred CcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCCC
Confidence 35777766666543 4678999999999999999999875 4 67999999999999999999999998
No 477
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=88.92 E-value=3.5 Score=42.84 Aligned_cols=52 Identities=15% Similarity=0.139 Sum_probs=35.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
|.-+++.+|+|+|||...+--+...+. .+-+++|++ ..+-..|+...++.+.
T Consensus 263 gs~~li~G~~G~GKt~l~~~f~~~~~~---~ge~~~y~s-~eEs~~~i~~~~~~lg 314 (484)
T TIGR02655 263 DSIILATGATGTGKTLLVSKFLENACA---NKERAILFA-YEESRAQLLRNAYSWG 314 (484)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH---CCCeEEEEE-eeCCHHHHHHHHHHcC
Confidence 567899999999999754433333322 234678776 5666778888887764
No 478
>PF10412 TrwB_AAD_bind: Type IV secretion-system coupling protein DNA-binding domain; InterPro: IPR019476 The plasmid conjugative coupling protein TraD (also known as TrwB) is a basic integral inner-membrane nucleoside-triphosphate-binding protein. It is the structural prototype for the type IV secretion system coupling proteins, a family of proteins essential for macromolecular transport between cells []. This protein forms hexamers from six structurally very similar protomers []. This hexamer contains a central channel running from the cytosolic pole (formed by the all-alpha domains) to the membrane pole ending at the transmembrane pore shaped by 12 transmembrane helices, rendering an overall mushroom-like structure. The TrwB all-alpha domain appears to be the DNA-binding domain of the structure. ; PDB: 1E9S_D 1E9R_F 1GKI_B 1GL7_G 1GL6_A.
Probab=88.90 E-value=0.52 Score=47.40 Aligned_cols=53 Identities=19% Similarity=0.134 Sum_probs=35.3
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
-+|.-...+++++.|.||+|||. ++-.++..+... +-+++|.=|.-+.....+
T Consensus 8 ~l~~~~e~~~~li~G~~GsGKT~-~i~~ll~~~~~~--g~~~iI~D~kg~~~~~f~ 60 (386)
T PF10412_consen 8 PLPKDSENRHILIIGATGSGKTQ-AIRHLLDQIRAR--GDRAIIYDPKGEFTERFY 60 (386)
T ss_dssp EE-GGGGGG-EEEEE-TTSSHHH-HHHHHHHHHHHT--T-EEEEEEETTHHHHHH-
T ss_pred ecccchhhCcEEEECCCCCCHHH-HHHHHHHHHHHc--CCEEEEEECCchHHHHhc
Confidence 55666667999999999999996 456777766544 347888888877655433
No 479
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=88.61 E-value=12 Score=36.81 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=12.4
Q ss_pred ceeeeccCCChhHHH
Q psy1548 151 DILCQAKSGMGKTAV 165 (448)
Q Consensus 151 ~vli~apTGsGKT~~ 165 (448)
-+-+.|+.|+|||..
T Consensus 58 ~igi~G~~GaGKSTl 72 (332)
T PRK09435 58 RIGITGVPGVGKSTF 72 (332)
T ss_pred EEEEECCCCCCHHHH
Confidence 467889999999954
No 480
>KOG0346|consensus
Probab=88.57 E-value=0.32 Score=48.33 Aligned_cols=49 Identities=33% Similarity=0.556 Sum_probs=39.5
Q ss_pred cccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 107 LFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 107 ~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
-++||||+-.|..|+||++|.....|=+.+||++|+. ..|-.+-++.|+
T Consensus 362 GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~---n~GtalSfv~P~ 410 (569)
T KOG0346|consen 362 GVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGN---NKGTALSFVSPK 410 (569)
T ss_pred chhccccchheeeeeecCCCCchHHHHHhccccccCC---CCCceEEEecch
Confidence 3789999999999999999999999999999988833 335555555554
No 481
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=88.50 E-value=3 Score=42.81 Aligned_cols=39 Identities=15% Similarity=0.320 Sum_probs=24.6
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... ....+.+.+...+....+|+.+
T Consensus 120 ~~~kvvIIdead~lt~~--~~n~LLk~lEep~~~~~~Il~t 158 (451)
T PRK06305 120 SRYKIYIIDEVHMLTKE--AFNSLLKTLEEPPQHVKFFLAT 158 (451)
T ss_pred CCCEEEEEecHHhhCHH--HHHHHHHHhhcCCCCceEEEEe
Confidence 45678999999988653 2334455555555555555543
No 482
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=88.48 E-value=3.4 Score=45.28 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=16.1
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
..|+++.||+|+|||...-
T Consensus 203 ~~n~lL~G~pG~GKT~l~~ 221 (731)
T TIGR02639 203 KNNPLLVGEPGVGKTAIAE 221 (731)
T ss_pred CCceEEECCCCCCHHHHHH
Confidence 3589999999999997653
No 483
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=88.45 E-value=2.6 Score=46.16 Aligned_cols=19 Identities=37% Similarity=0.405 Sum_probs=16.2
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
..++++.||+|+|||...-
T Consensus 207 ~~n~LLvGppGvGKT~lae 225 (758)
T PRK11034 207 KNNPLLVGESGVGKTAIAE 225 (758)
T ss_pred CCCeEEECCCCCCHHHHHH
Confidence 4689999999999997643
No 484
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=88.42 E-value=3.2 Score=40.58 Aligned_cols=41 Identities=5% Similarity=0.080 Sum_probs=27.9
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+.+|||+||.|.. .....+.+.+.--|++..+|+.|..
T Consensus 106 g~~KV~iI~~a~~m~~--~AaNaLLKtLEEPp~~~~fiL~t~~ 146 (325)
T PRK06871 106 GGNKVVYIQGAERLTE--AAANALLKTLEEPRPNTYFLLQADL 146 (325)
T ss_pred CCceEEEEechhhhCH--HHHHHHHHHhcCCCCCeEEEEEECC
Confidence 5678999999999977 3455555566665666666665443
No 485
>PRK06321 replicative DNA helicase; Provisional
Probab=88.40 E-value=1.7 Score=44.89 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=53.2
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHhH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKDE 225 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~~ 225 (448)
..|.=+++.|.+|+|||... +-+...+.... +..+++++ ...-..|+...+-.... ++...-+ .|... ..+.
T Consensus 224 ~~G~LiiiaarPgmGKTafa-l~ia~~~a~~~-g~~v~~fS-LEMs~~ql~~Rlla~~s---~v~~~~i~~~~l~-~~e~ 296 (472)
T PRK06321 224 SPSNLMILAARPAMGKTALA-LNIAENFCFQN-RLPVGIFS-LEMTVDQLIHRIICSRS---EVESKKISVGDLS-GRDF 296 (472)
T ss_pred CCCcEEEEEeCCCCChHHHH-HHHHHHHHHhc-CCeEEEEe-ccCCHHHHHHHHHHhhc---CCCHHHhhcCCCC-HHHH
Confidence 33556788999999999554 43444332111 23455554 22223343333332221 2222111 22222 1121
Q ss_pred -------HHHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 226 -------EYLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 226 -------~~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
..+.. ..+.|- |...+...++.-.. -..++++|||=.+.|.
T Consensus 297 ~~~~~a~~~l~~--~~~~idd~~~~ti~~i~~~~r~~~~-~~~~~lvvIDyLql~~ 349 (472)
T PRK06321 297 QRIVSVVNEMQE--HTLLIDDQPGLKITDLRARARRMKE-SYDIQFLIIDYLQLLS 349 (472)
T ss_pred HHHHHHHHHHHc--CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHHcC
Confidence 22222 246554 44555444432111 1347899999999874
No 486
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=88.35 E-value=0.33 Score=55.34 Aligned_cols=45 Identities=24% Similarity=0.388 Sum_probs=37.2
Q ss_pred cceeEeeccccCCcccccceeEeeccC---------------C---CCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDM---------------P---EDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~---------------p---~~~~~yQ~~~~~~~~~~ 143 (448)
.+|.||||++++|+|.++++.|+|+.. | .+...|.|.+|||||.-
T Consensus 338 rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~ 400 (1294)
T PRK11131 338 RRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS 400 (1294)
T ss_pred eeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC
Confidence 489999999999999999999999742 2 22356899999999953
No 487
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=88.29 E-value=2.6 Score=41.49 Aligned_cols=41 Identities=10% Similarity=0.137 Sum_probs=27.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+++|||+||.|... ....+.+.+..-|++.-+|++|..
T Consensus 131 ~~~kV~iI~~ae~m~~~--AaNaLLKtLEEPp~~t~fiL~t~~ 171 (342)
T PRK06964 131 GGARVVVLYPAEALNVA--AANALLKTLEEPPPGTVFLLVSAR 171 (342)
T ss_pred CCceEEEEechhhcCHH--HHHHHHHHhcCCCcCcEEEEEECC
Confidence 56789999999999773 444555556655566666665544
No 488
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=88.21 E-value=2.4 Score=44.77 Aligned_cols=38 Identities=13% Similarity=0.210 Sum_probs=22.5
Q ss_pred CCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEE
Q psy1548 254 LSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMM 293 (448)
Q Consensus 254 ~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~ 293 (448)
....+++||||+|.|... ....+.+.+...|...-+|+
T Consensus 117 ~~~~KVvIIDEa~~Ls~~--a~naLLK~LEepp~~~vfI~ 154 (563)
T PRK06647 117 SSRYRVYIIDEVHMLSNS--AFNALLKTIEEPPPYIVFIF 154 (563)
T ss_pred cCCCEEEEEEChhhcCHH--HHHHHHHhhccCCCCEEEEE
Confidence 356789999999988653 23334444444444444443
No 489
>PRK08760 replicative DNA helicase; Provisional
Probab=88.20 E-value=1.9 Score=44.56 Aligned_cols=114 Identities=20% Similarity=0.150 Sum_probs=54.3
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKD 224 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 224 (448)
+..|.=++|.|.+|+|||...+ -+...+... .+..+++++. ..-..|+...+....... ....+ .|... ..+
T Consensus 226 ~~~G~LivIaarPg~GKTafal-~iA~~~a~~-~g~~V~~fSl-EMs~~ql~~Rl~a~~s~i---~~~~i~~g~l~-~~e 298 (476)
T PRK08760 226 LQPTDLIILAARPAMGKTTFAL-NIAEYAAIK-SKKGVAVFSM-EMSASQLAMRLISSNGRI---NAQRLRTGALE-DED 298 (476)
T ss_pred CCCCceEEEEeCCCCChhHHHH-HHHHHHHHh-cCCceEEEec-cCCHHHHHHHHHHhhCCC---cHHHHhcCCCC-HHH
Confidence 3445668889999999996543 333332211 1224666642 222345544444433222 11111 22211 111
Q ss_pred H-------HHHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 225 E-------EYLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 225 ~-------~~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
. ..+.. ..+.|. |++.+...++.-.. -..+++||||=.+.|.
T Consensus 299 ~~~~~~a~~~l~~--~~l~I~d~~~~t~~~I~~~~r~l~~-~~~~~lVvIDyLql~~ 352 (476)
T PRK08760 299 WARVTGAIKMLKE--TKIFIDDTPGVSPEVLRSKCRRLKR-EHDLGLIVIDYLQLMS 352 (476)
T ss_pred HHHHHHHHHHHhc--CCEEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEecHHhcC
Confidence 1 12222 245444 45555444332111 1347899999999774
No 490
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=88.13 E-value=0.66 Score=46.05 Aligned_cols=39 Identities=18% Similarity=0.260 Sum_probs=24.8
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccC-CCeEEEEee
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTD-SNVYVLVMC 187 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~-~~~~~lil~ 187 (448)
.+.-++++||||||||.. +-.++..+.... .+.+++.+-
T Consensus 133 ~~glilI~GpTGSGKTTt-L~aLl~~i~~~~~~~~~Ivt~E 172 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTL-LAAIIRELAEAPDSHRKILTYE 172 (358)
T ss_pred cCCEEEEECCCCCCHHHH-HHHHHHHHhhcCCCCcEEEEeC
Confidence 467899999999999965 345555554332 222444443
No 491
>KOG2227|consensus
Probab=88.08 E-value=4.1 Score=41.29 Aligned_cols=51 Identities=22% Similarity=0.217 Sum_probs=30.2
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeecc-HHHHHHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT-RELAFQISK 198 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt-~~L~~q~~~ 198 (448)
..+.++.|+|.+|+|||++.. -++..+......+.++++--+ ...+..++.
T Consensus 173 ~t~gSlYVsG~PGtgkt~~l~-rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 173 NTSGSLYVSGQPGTGKTALLS-RVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred ccCcceEeeCCCCcchHHHHH-HHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 346789999999999998743 244444333344454555433 345555443
No 492
>PRK08506 replicative DNA helicase; Provisional
Probab=87.86 E-value=2.1 Score=44.20 Aligned_cols=114 Identities=19% Similarity=0.145 Sum_probs=55.0
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEE-EcCcccHHh
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF-FGGLPIQKD 224 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~-~g~~~~~~~ 224 (448)
+..|.=+++.|.+|+|||...+--+.+.. . .+..+++++. ..-..|+...+-.... ++....+ .|..+ ..+
T Consensus 189 ~~~G~LivIaarpg~GKT~fal~ia~~~~-~--~g~~V~~fSl-EMs~~ql~~Rlla~~s---~v~~~~i~~~~l~-~~e 260 (472)
T PRK08506 189 FNKGDLIIIAARPSMGKTTLCLNMALKAL-N--QDKGVAFFSL-EMPAEQLMLRMLSAKT---SIPLQNLRTGDLD-DDE 260 (472)
T ss_pred CCCCceEEEEcCCCCChHHHHHHHHHHHH-h--cCCcEEEEeC-cCCHHHHHHHHHHHhc---CCCHHHHhcCCCC-HHH
Confidence 44466788999999999965443343332 2 2335666642 2334444443332222 2211111 12222 111
Q ss_pred H-------HHHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 225 E-------EYLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 225 ~-------~~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
. ..+.. ..+.|- |+..+...++.-......++++|||=.+.|.
T Consensus 261 ~~~~~~a~~~l~~--~~l~I~d~~~~ti~~I~~~~r~l~~~~~~~~lvvIDyLql~~ 315 (472)
T PRK08506 261 WERLSDACDELSK--KKLFVYDSGYVNIHQVRAQLRKLKSQHPEIGLAVIDYLQLMS 315 (472)
T ss_pred HHHHHHHHHHHHc--CCeEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEcChhhcc
Confidence 1 12223 234442 4555544443211112357899999999775
No 493
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=87.85 E-value=1.1 Score=43.59 Aligned_cols=46 Identities=15% Similarity=0.034 Sum_probs=29.0
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 193 (448)
-+..|+-+.|.+|+|+|||...+-.+..... .+..++++..-..+-
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~---~g~~v~yId~E~~~~ 96 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQK---AGGTAAFIDAEHALD 96 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHH---cCCcEEEEcccchhH
Confidence 3445678899999999999665433333322 234677776544443
No 494
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=87.80 E-value=1.9 Score=47.60 Aligned_cols=19 Identities=26% Similarity=0.266 Sum_probs=15.8
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|..+++.||+|+|||..+
T Consensus 346 ~~~~lll~GppG~GKT~lA 364 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLG 364 (775)
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 3567999999999999654
No 495
>PRK00254 ski2-like helicase; Provisional
Probab=87.74 E-value=0.49 Score=51.76 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=40.8
Q ss_pred ceeEeeccccCCcccccceeEee-------ccCC-CCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 100 RILVATNLFGRGMDIERVNIVFN-------YDMP-EDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 100 ~~~~~~~~~~~~~d~~~~~~v~~-------~~~p-~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+|+|||+.+++|+|.+.++.|+. +..| .++.+|+|.+|||||.. .=..|..++++.+
T Consensus 323 ~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~-~d~~G~~ii~~~~ 387 (720)
T PRK00254 323 KVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPK-YDEVGEAIIVATT 387 (720)
T ss_pred eEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCC-cCCCceEEEEecC
Confidence 89999999999999999998873 3332 25667899999999932 1123555555443
No 496
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=87.70 E-value=3.9 Score=45.69 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=16.0
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
..+.++.||+|+|||...-
T Consensus 194 ~~n~lL~G~pGvGKT~l~~ 212 (852)
T TIGR03346 194 KNNPVLIGEPGVGKTAIVE 212 (852)
T ss_pred CCceEEEcCCCCCHHHHHH
Confidence 3689999999999997653
No 497
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=87.61 E-value=0.57 Score=47.49 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=35.1
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
.+|.-...+++++.|+||+|||.+ +..++..+... +.+++|+=|..++...
T Consensus 35 ~~~~~~~~~h~~i~g~tGsGKt~~-i~~l~~~~~~~--~~~~vi~D~kg~~~~~ 85 (410)
T cd01127 35 PFPKDAEEAHTMIIGTTGTGKTTQ-IRELLASIRAR--GDRAIIYDPNGGFVSK 85 (410)
T ss_pred eCCcchhhccEEEEcCCCCCHHHH-HHHHHHHHHhc--CCCEEEEeCCcchhHh
Confidence 445555568999999999999975 44445444333 3368888888876543
No 498
>PRK09165 replicative DNA helicase; Provisional
Probab=87.54 E-value=3.5 Score=42.89 Aligned_cols=117 Identities=15% Similarity=0.051 Sum_probs=55.8
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhcc------------CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEE
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT------------DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~------------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 213 (448)
+..|.=+++.|++|+|||...+--+.+..... ..+..++|++ ...-..|+...+....... ...
T Consensus 214 ~~~g~livIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fS-lEMs~~ql~~R~la~~s~v---~~~ 289 (497)
T PRK09165 214 LHPSDLIILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFS-LEMSAEQLATRILSEQSEI---SSS 289 (497)
T ss_pred CCCCceEEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEe-CcCCHHHHHHHHHHHhcCC---CHH
Confidence 44456788999999999965443333322211 1234566664 3333445544443332222 111
Q ss_pred EEEcCcccHHhHH-------HHhcCCCcEEEE-----cHHHHHHHHHCCCCcCCCeeEEEecchhHHH
Q psy1548 214 VFFGGLPIQKDEE-------YLKTHNPQIVVG-----TPGRILALVRNKKLNLSLLKHFILDECDKML 269 (448)
Q Consensus 214 ~~~g~~~~~~~~~-------~l~~~~~~IlV~-----Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~ 269 (448)
.+..+.-...+.. .+.. ..+.|- |+..+...+++-.. -..++++|||=.+.|.
T Consensus 290 ~i~~~~l~~~e~~~l~~a~~~l~~--~~l~I~d~~~~ti~~i~~~ir~l~~-~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 290 KIRRGKISEEDFEKLVDASQELQK--LPLYIDDTPALSISQLRARARRLKR-QHGLDLLVVDYLQLIR 354 (497)
T ss_pred HHhcCCCCHHHHHHHHHHHHHHhc--CCeEEeCCCCCCHHHHHHHHHHHHH-hcCCCEEEEcchHhcc
Confidence 1111111111111 1222 235543 45555444432111 1347899999999775
No 499
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=87.54 E-value=0.85 Score=43.03 Aligned_cols=39 Identities=18% Similarity=0.123 Sum_probs=23.8
Q ss_pred eeeeccCCChhHHHHHHHHHHh-hhc--cCCCeEEEEeeccH
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQ-LET--TDSNVYVLVMCHTR 190 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~-l~~--~~~~~~~lil~Pt~ 190 (448)
.=++|+.|+|||-..+-.++.. +.. ...+.+++|+.-..
T Consensus 41 tEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~ 82 (256)
T PF08423_consen 41 TEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEG 82 (256)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSS
T ss_pred EEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCC
Confidence 3478999999995544333333 322 22345899997444
No 500
>PRK10865 protein disaggregation chaperone; Provisional
Probab=87.42 E-value=3.6 Score=45.90 Aligned_cols=19 Identities=26% Similarity=0.370 Sum_probs=15.9
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
..++++.||+|+|||...-
T Consensus 199 ~~n~lL~G~pGvGKT~l~~ 217 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVE 217 (857)
T ss_pred cCceEEECCCCCCHHHHHH
Confidence 3589999999999997653
Done!