Query psy1548
Match_columns 448
No_of_seqs 316 out of 2610
Neff 8.9
Searched_HMMs 29240
Date Fri Aug 16 22:10:00 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy1548.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/1548hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2db3_A ATP-dependent RNA helic 100.0 4.7E-48 1.6E-52 392.8 34.9 335 70-441 46-433 (434)
2 1xti_A Probable ATP-dependent 100.0 3.2E-46 1.1E-50 373.5 38.2 338 79-448 7-390 (391)
3 2j0s_A ATP-dependent RNA helic 100.0 5.7E-45 2E-49 367.1 32.6 325 79-440 36-407 (410)
4 2i4i_A ATP-dependent RNA helic 100.0 1.1E-44 3.7E-49 365.6 34.0 334 72-442 7-409 (417)
5 1s2m_A Putative ATP-dependent 100.0 1E-43 3.6E-48 356.6 35.5 331 78-446 19-395 (400)
6 3eiq_A Eukaryotic initiation f 100.0 6E-44 2.1E-48 359.7 31.6 330 76-441 36-412 (414)
7 3fht_A ATP-dependent RNA helic 100.0 6.3E-42 2.2E-46 344.5 33.5 325 77-438 22-402 (412)
8 1fuu_A Yeast initiation factor 100.0 7.1E-43 2.4E-47 349.3 21.1 329 79-448 20-349 (394)
9 3pey_A ATP-dependent RNA helic 100.0 7.1E-41 2.4E-45 334.6 34.9 321 79-438 4-380 (395)
10 1hv8_A Putative ATP-dependent 100.0 3.3E-40 1.1E-44 326.5 36.7 314 79-436 5-365 (367)
11 3fmp_B ATP-dependent RNA helic 100.0 2.3E-42 7.8E-47 355.5 18.6 329 79-448 91-429 (479)
12 3sqw_A ATP-dependent RNA helic 100.0 1.3E-40 4.3E-45 350.2 20.0 326 86-448 27-381 (579)
13 3i5x_A ATP-dependent RNA helic 100.0 6.2E-40 2.1E-44 344.0 20.2 326 86-448 78-432 (563)
14 2z0m_A 337AA long hypothetical 100.0 2.7E-38 9.2E-43 309.2 24.0 300 87-448 1-306 (337)
15 3fho_A ATP-dependent RNA helic 100.0 1.3E-38 4.3E-43 329.6 19.7 318 82-438 121-493 (508)
16 2v1x_A ATP-dependent DNA helic 100.0 2.1E-37 7.3E-42 324.3 18.3 316 82-448 23-357 (591)
17 3fe2_A Probable ATP-dependent 100.0 2.9E-36 9.8E-41 282.2 21.4 218 69-321 18-240 (242)
18 1oyw_A RECQ helicase, ATP-depe 100.0 5.4E-37 1.8E-41 317.8 16.9 315 80-448 2-326 (523)
19 1t6n_A Probable ATP-dependent 100.0 1.7E-35 6E-40 272.6 21.4 215 71-317 5-219 (220)
20 3oiy_A Reverse gyrase helicase 100.0 1.6E-36 5.4E-41 306.1 12.1 289 125-448 21-344 (414)
21 3fmo_B ATP-dependent RNA helic 100.0 2.8E-35 9.6E-40 283.9 20.2 206 79-320 91-299 (300)
22 3bor_A Human initiation factor 100.0 3.5E-35 1.2E-39 273.9 19.4 209 77-319 27-235 (237)
23 1vec_A ATP-dependent RNA helic 100.0 9.3E-35 3.2E-39 264.8 21.5 203 80-316 3-205 (206)
24 3iuy_A Probable ATP-dependent 100.0 6.4E-35 2.2E-39 270.4 19.6 208 74-317 13-227 (228)
25 2oxc_A Probable ATP-dependent 100.0 8.1E-35 2.8E-39 270.2 19.6 210 74-318 18-228 (230)
26 1q0u_A Bstdead; DEAD protein, 100.0 8.3E-35 2.9E-39 268.0 18.4 207 80-320 4-213 (219)
27 3ber_A Probable ATP-dependent 100.0 2.4E-34 8.2E-39 270.2 21.5 205 79-318 42-247 (249)
28 1wrb_A DJVLGB; RNA helicase, D 100.0 7.3E-35 2.5E-39 274.4 17.9 219 78-332 21-252 (253)
29 1qde_A EIF4A, translation init 100.0 5.3E-34 1.8E-38 263.3 20.1 210 76-321 10-219 (224)
30 3l9o_A ATP-dependent RNA helic 100.0 9E-35 3.1E-39 322.8 16.1 262 126-415 182-539 (1108)
31 3ly5_A ATP-dependent RNA helic 100.0 8.7E-34 3E-38 268.4 19.7 201 79-314 51-258 (262)
32 2zj8_A DNA helicase, putative 100.0 1.8E-34 6.1E-39 310.8 14.8 283 81-415 2-329 (720)
33 2gxq_A Heat resistant RNA depe 100.0 3.1E-33 1.1E-37 254.8 20.6 201 81-318 2-205 (207)
34 2va8_A SSO2462, SKI2-type heli 100.0 1.6E-33 5.5E-38 303.2 21.6 283 80-415 8-347 (715)
35 2pl3_A Probable ATP-dependent 100.0 3.3E-33 1.1E-37 260.2 20.8 206 79-320 24-234 (236)
36 4a2p_A RIG-I, retinoic acid in 100.0 1.9E-33 6.5E-38 293.6 18.7 306 130-448 9-493 (556)
37 2ykg_A Probable ATP-dependent 100.0 1.7E-34 5.7E-39 310.1 10.0 311 123-448 11-501 (696)
38 3dkp_A Probable ATP-dependent 100.0 2.7E-33 9.2E-38 262.3 16.6 218 71-321 16-243 (245)
39 3tbk_A RIG-I helicase domain; 100.0 4.2E-33 1.4E-37 290.7 18.8 306 129-448 5-492 (555)
40 2xgj_A ATP-dependent RNA helic 100.0 8.9E-33 3E-37 304.3 22.2 263 126-416 84-442 (1010)
41 2p6r_A Afuhel308 helicase; pro 100.0 5.2E-33 1.8E-37 298.5 19.0 282 81-415 2-331 (702)
42 4a2q_A RIG-I, retinoic acid in 100.0 2E-32 6.8E-37 297.7 18.0 311 123-448 246-734 (797)
43 4a4z_A Antiviral helicase SKI2 100.0 3.4E-32 1.2E-36 299.7 18.6 264 125-415 36-434 (997)
44 4ddu_A Reverse gyrase; topoiso 100.0 1.5E-32 5.3E-37 304.8 12.4 255 123-412 77-360 (1104)
45 1wp9_A ATP-dependent RNA helic 100.0 2.9E-31 9.8E-36 271.3 19.7 304 128-448 9-459 (494)
46 1tf5_A Preprotein translocase 100.0 3.7E-32 1.3E-36 286.3 11.0 301 123-448 82-528 (844)
47 4a2w_A RIG-I, retinoic acid in 100.0 2.1E-31 7.2E-36 293.2 16.1 311 123-448 246-734 (936)
48 1gku_B Reverse gyrase, TOP-RG; 100.0 1.8E-32 6.1E-37 304.3 4.9 252 123-412 56-325 (1054)
49 2fsf_A Preprotein translocase 100.0 5.3E-31 1.8E-35 276.9 12.9 301 125-448 74-566 (853)
50 4f92_B U5 small nuclear ribonu 100.0 6.3E-30 2.2E-34 293.4 21.3 273 123-415 77-413 (1724)
51 4f92_B U5 small nuclear ribonu 100.0 1.5E-29 5.1E-34 290.3 23.5 286 86-415 910-1248(1724)
52 4gl2_A Interferon-induced heli 100.0 4.3E-32 1.5E-36 291.5 2.4 308 128-448 7-504 (699)
53 1nkt_A Preprotein translocase 100.0 1.6E-29 5.6E-34 265.9 14.8 269 123-414 110-516 (922)
54 2eyq_A TRCF, transcription-rep 100.0 1.5E-28 5E-33 274.5 21.2 258 130-415 605-873 (1151)
55 2oca_A DAR protein, ATP-depend 100.0 7.1E-29 2.4E-33 256.8 16.5 295 128-448 113-438 (510)
56 3o8b_A HCV NS3 protease/helica 99.9 2E-27 6.7E-32 248.2 18.5 226 142-419 225-452 (666)
57 1gm5_A RECG; helicase, replica 99.9 4.5E-29 1.6E-33 267.1 6.2 259 125-415 368-648 (780)
58 2whx_A Serine protease/ntpase/ 99.9 2.2E-28 7.6E-33 256.9 5.4 243 123-417 169-412 (618)
59 2xau_A PRE-mRNA-splicing facto 99.9 9.6E-27 3.3E-31 250.4 17.9 284 79-415 71-378 (773)
60 2jlq_A Serine protease subunit 99.9 1.8E-27 6.2E-32 242.3 8.0 241 123-416 2-244 (451)
61 2fwr_A DNA repair protein RAD2 99.9 3.1E-28 1.1E-32 249.6 0.4 239 125-404 90-394 (472)
62 2wv9_A Flavivirin protease NS2 99.9 2E-27 6.8E-32 251.3 4.3 241 125-417 215-467 (673)
63 1yks_A Genome polyprotein [con 99.9 1.4E-28 4.9E-33 249.4 -7.0 220 145-416 4-233 (440)
64 3h1t_A Type I site-specific re 99.9 2.8E-26 9.6E-31 241.5 7.2 294 128-448 178-539 (590)
65 2v6i_A RNA helicase; membrane, 99.9 2.6E-25 8.8E-30 225.0 12.9 225 148-415 1-226 (431)
66 2z83_A Helicase/nucleoside tri 99.9 1.3E-25 4.6E-30 228.9 9.4 252 142-448 14-295 (459)
67 3rc3_A ATP-dependent RNA helic 99.9 5.3E-24 1.8E-28 224.6 13.2 231 145-416 151-382 (677)
68 1z63_A Helicase of the SNF2/RA 99.9 3E-23 1E-27 214.1 12.1 295 127-448 36-434 (500)
69 3dmq_A RNA polymerase-associat 99.9 1E-23 3.5E-28 232.5 6.3 310 125-448 150-596 (968)
70 3b6e_A Interferon-induced heli 99.9 4.1E-23 1.4E-27 188.6 9.3 160 128-297 33-216 (216)
71 3llm_A ATP-dependent RNA helic 99.9 1E-21 3.5E-26 182.4 15.0 169 127-314 60-232 (235)
72 2w00_A HSDR, R.ECOR124I; ATP-b 99.9 3.4E-21 1.2E-25 211.4 17.5 153 129-300 272-440 (1038)
73 2ipc_A Preprotein translocase 99.9 4.1E-20 1.4E-24 194.2 22.8 128 123-269 78-215 (997)
74 3mwy_W Chromo domain-containin 99.8 4.1E-21 1.4E-25 208.5 12.4 272 127-414 235-632 (800)
75 1rif_A DAR protein, DNA helica 99.8 2.4E-20 8.1E-25 178.0 13.2 153 129-302 114-266 (282)
76 1z3i_X Similar to RAD54-like; 99.8 4E-19 1.4E-23 188.3 20.5 272 128-414 55-477 (644)
77 3jux_A Protein translocase sub 99.8 4.3E-19 1.5E-23 183.4 18.7 296 125-448 75-570 (822)
78 2fz4_A DNA repair protein RAD2 99.7 6.6E-18 2.3E-22 156.8 10.6 142 124-301 89-231 (237)
79 1c4o_A DNA nucleotide excision 99.6 1.8E-15 6.3E-20 160.3 14.2 73 340-414 423-497 (664)
80 1t5i_A C_terminal domain of A 99.6 1.6E-14 5.6E-19 127.0 15.0 123 326-448 3-171 (172)
81 2d7d_A Uvrabc system protein B 99.6 2.2E-13 7.4E-18 144.3 22.9 109 287-404 385-495 (661)
82 3crv_A XPD/RAD3 related DNA he 99.5 6.2E-15 2.1E-19 153.5 7.8 131 130-270 5-187 (551)
83 2p6n_A ATP-dependent RNA helic 99.5 2.7E-13 9.1E-18 121.3 12.8 133 307-441 9-187 (191)
84 2hjv_A ATP-dependent RNA helic 99.4 2.8E-12 9.7E-17 111.5 14.6 112 324-436 5-162 (163)
85 1fuk_A Eukaryotic initiation f 99.4 2.8E-12 9.7E-17 111.8 14.6 113 327-440 2-161 (165)
86 2rb4_A ATP-dependent RNA helic 99.4 5.9E-12 2E-16 110.8 14.7 114 324-438 3-169 (175)
87 2vl7_A XPD; helicase, unknown 99.4 2E-13 6.9E-18 141.6 5.6 128 125-269 7-188 (540)
88 2jgn_A DBX, DDX3, ATP-dependen 99.3 5.3E-12 1.8E-16 112.2 11.2 117 324-441 15-178 (185)
89 2yjt_D ATP-dependent RNA helic 98.8 2.2E-12 7.5E-17 113.1 0.0 118 327-448 2-120 (170)
90 3eaq_A Heat resistant RNA depe 99.2 2E-10 6.8E-15 104.3 12.7 110 328-438 5-160 (212)
91 3i32_A Heat resistant RNA depe 99.2 2.2E-10 7.5E-15 109.4 13.1 110 328-438 2-157 (300)
92 4a15_A XPD helicase, ATP-depen 98.8 2.7E-09 9.3E-14 112.0 4.9 84 130-218 5-88 (620)
93 1w36_D RECD, exodeoxyribonucle 98.7 9.3E-09 3.2E-13 107.9 7.2 143 133-297 154-298 (608)
94 1z5z_A Helicase of the SNF2/RA 98.4 1.2E-07 4.1E-12 89.1 4.6 111 336-448 92-205 (271)
95 1oyw_A RECQ helicase, ATP-depe 98.4 1.2E-07 4.1E-12 97.8 3.2 134 10-143 195-331 (523)
96 2v1x_A ATP-dependent DNA helic 98.3 2.6E-07 9E-12 96.4 4.8 133 10-142 221-361 (591)
97 3lfu_A DNA helicase II; SF1 he 97.8 0.0005 1.7E-08 72.4 17.2 65 133-205 14-79 (647)
98 2gk6_A Regulator of nonsense t 97.7 0.00013 4.5E-09 76.6 11.0 68 128-203 180-247 (624)
99 2xzl_A ATP-dependent helicase 97.7 0.00015 5E-09 78.2 10.6 68 128-203 360-427 (802)
100 2wjy_A Regulator of nonsense t 97.6 0.00031 1.1E-08 75.6 11.3 67 129-203 357-423 (800)
101 3e1s_A Exodeoxyribonuclease V, 97.5 0.00017 5.8E-09 74.8 8.6 129 126-297 187-315 (574)
102 4b3f_X DNA-binding protein smu 97.4 0.0001 3.6E-09 77.8 5.6 67 128-203 189-256 (646)
103 3eaq_A Heat resistant RNA depe 97.4 0.00012 4E-09 65.9 4.5 45 99-143 82-126 (212)
104 3upu_A ATP-dependent DNA helic 97.4 0.00026 9E-09 71.5 7.5 131 123-296 23-163 (459)
105 2p6n_A ATP-dependent RNA helic 97.3 0.00018 6.1E-09 63.6 5.0 45 98-142 104-148 (191)
106 3i32_A Heat resistant RNA depe 97.2 0.00029 9.9E-09 66.9 5.6 45 98-142 78-122 (300)
107 2hjv_A ATP-dependent RNA helic 97.1 0.0003 1E-08 60.3 4.2 44 99-142 86-129 (163)
108 1t5i_A C_terminal domain of A 97.1 0.0003 1E-08 60.9 4.3 44 98-141 81-124 (172)
109 2jgn_A DBX, DDX3, ATP-dependen 97.1 0.00055 1.9E-08 60.0 6.0 72 71-143 69-141 (185)
110 2db3_A ATP-dependent RNA helic 97.1 0.00056 1.9E-08 68.5 6.8 57 99-158 351-407 (434)
111 1fuk_A Eukaryotic initiation f 97.1 0.00057 2E-08 58.6 5.3 43 99-141 81-123 (165)
112 2rb4_A ATP-dependent RNA helic 97.0 0.00043 1.5E-08 60.0 4.4 44 98-141 84-133 (175)
113 2yjt_D ATP-dependent RNA helic 96.1 9.2E-05 3.1E-09 64.1 0.0 44 98-141 80-123 (170)
114 2o0j_A Terminase, DNA packagin 96.8 0.0066 2.3E-07 59.4 11.1 76 126-208 161-236 (385)
115 3vkw_A Replicase large subunit 96.7 0.0048 1.6E-07 61.2 9.1 108 150-297 162-269 (446)
116 3i5x_A ATP-dependent RNA helic 96.6 0.00095 3.3E-08 69.0 3.8 45 98-142 392-436 (563)
117 3sqw_A ATP-dependent RNA helic 96.6 0.0014 4.7E-08 68.2 4.8 46 98-143 341-386 (579)
118 2i4i_A ATP-dependent RNA helic 96.4 0.0014 4.9E-08 64.7 3.2 45 98-142 326-370 (417)
119 3cpe_A Terminase, DNA packagin 96.3 0.024 8.3E-07 58.9 12.2 76 126-208 161-236 (592)
120 2j0s_A ATP-dependent RNA helic 96.2 0.0028 9.6E-08 62.4 4.1 45 98-142 326-370 (410)
121 3pey_A ATP-dependent RNA helic 96.2 0.0027 9.3E-08 61.9 3.8 45 98-142 293-343 (395)
122 1xti_A Probable ATP-dependent 96.2 0.0039 1.3E-07 60.8 4.9 44 98-141 300-343 (391)
123 4gl2_A Interferon-induced heli 96.2 0.0036 1.2E-07 66.4 4.9 59 99-163 465-523 (699)
124 2chg_A Replication factor C sm 96.1 0.036 1.2E-06 48.8 10.7 40 255-296 101-140 (226)
125 2z0m_A 337AA long hypothetical 96.0 0.0029 9.9E-08 60.3 3.1 45 98-142 266-310 (337)
126 3fht_A ATP-dependent RNA helic 96.0 0.0036 1.2E-07 61.5 3.8 44 98-141 316-365 (412)
127 3jux_A Protein translocase sub 96.0 0.007 2.4E-07 63.4 5.8 47 97-143 521-575 (822)
128 2b8t_A Thymidine kinase; deoxy 96.0 0.0087 3E-07 53.9 5.8 113 149-296 12-124 (223)
129 3oiy_A Reverse gyrase helicase 96.0 0.0041 1.4E-07 61.5 3.9 46 98-143 297-349 (414)
130 1tf5_A Preprotein translocase 96.0 0.0051 1.7E-07 65.5 4.7 46 98-143 480-533 (844)
131 3ec2_A DNA replication protein 95.9 0.013 4.3E-07 50.7 6.5 19 148-166 37-55 (180)
132 2orw_A Thymidine kinase; TMTK, 95.9 0.019 6.5E-07 50.0 7.6 39 149-190 3-41 (184)
133 3eiq_A Eukaryotic initiation f 95.9 0.0048 1.7E-07 60.6 4.2 43 99-141 331-373 (414)
134 1s2m_A Putative ATP-dependent 95.9 0.0043 1.5E-07 60.8 3.6 43 99-141 309-351 (400)
135 3te6_A Regulatory protein SIR3 95.8 0.032 1.1E-06 53.0 9.4 25 149-174 45-69 (318)
136 1xx6_A Thymidine kinase; NESG, 95.8 0.018 6E-07 50.6 6.8 39 149-190 8-46 (191)
137 2v1u_A Cell division control p 95.8 0.058 2E-06 52.2 11.3 19 148-166 43-61 (387)
138 1hv8_A Putative ATP-dependent 95.7 0.003 1E-07 60.9 1.5 44 99-142 289-332 (367)
139 1l8q_A Chromosomal replication 95.6 0.05 1.7E-06 51.7 10.0 36 149-187 37-72 (324)
140 2ykg_A Probable ATP-dependent 95.6 0.0045 1.5E-07 65.6 2.8 44 98-142 461-504 (696)
141 3fho_A ATP-dependent RNA helic 95.6 0.0091 3.1E-07 60.9 4.9 45 97-141 406-456 (508)
142 4a2p_A RIG-I, retinoic acid in 95.6 0.0062 2.1E-07 62.4 3.6 52 90-142 443-496 (556)
143 3fmp_B ATP-dependent RNA helic 95.6 0.0021 7.1E-08 65.0 0.0 43 99-141 384-432 (479)
144 2j9r_A Thymidine kinase; TK1, 95.3 0.022 7.7E-07 50.7 5.8 40 149-191 28-67 (214)
145 2qby_B CDC6 homolog 3, cell di 95.3 0.035 1.2E-06 53.9 7.6 18 149-166 45-62 (384)
146 2z4s_A Chromosomal replication 95.2 0.12 4.1E-06 51.5 11.5 38 149-187 130-167 (440)
147 2jlq_A Serine protease subunit 95.2 0.0079 2.7E-07 60.4 2.9 44 99-143 235-298 (451)
148 2kjq_A DNAA-related protein; s 95.2 0.013 4.3E-07 49.3 3.6 19 148-166 35-53 (149)
149 3tbk_A RIG-I helicase domain; 95.2 0.0081 2.8E-07 61.4 2.9 50 91-141 443-494 (555)
150 3bos_A Putative DNA replicatio 95.2 0.015 5E-07 52.4 4.2 19 148-166 51-69 (242)
151 1d2n_A N-ethylmaleimide-sensit 95.1 0.21 7E-06 46.0 12.2 18 149-166 64-81 (272)
152 3n70_A Transport activator; si 95.0 0.058 2E-06 44.7 7.3 20 147-166 22-41 (145)
153 4a2q_A RIG-I, retinoic acid in 95.0 0.012 4.2E-07 63.4 3.8 52 90-142 684-737 (797)
154 1fnn_A CDC6P, cell division co 94.9 0.052 1.8E-06 52.6 7.8 35 151-187 46-80 (389)
155 1fuu_A Yeast initiation factor 94.9 0.0046 1.6E-07 60.3 0.0 44 98-141 309-352 (394)
156 2z83_A Helicase/nucleoside tri 94.7 0.012 4E-07 59.3 2.4 44 99-143 237-300 (459)
157 3syl_A Protein CBBX; photosynt 94.6 0.16 5.3E-06 47.6 10.1 19 148-166 66-84 (309)
158 2d7d_A Uvrabc system protein B 94.6 0.02 6.9E-07 60.3 4.0 54 99-156 496-554 (661)
159 1wp9_A ATP-dependent RNA helic 94.5 0.018 6.3E-07 57.3 3.4 53 91-143 411-464 (494)
160 4a2w_A RIG-I, retinoic acid in 94.5 0.021 7E-07 62.8 3.9 52 90-142 684-737 (936)
161 1sxj_E Activator 1 40 kDa subu 94.4 0.14 4.7E-06 49.1 9.3 43 255-299 133-175 (354)
162 1yks_A Genome polyprotein [con 94.4 0.015 5.1E-07 58.2 2.4 52 90-142 214-285 (440)
163 3u61_B DNA polymerase accessor 94.4 0.1 3.5E-06 49.4 8.1 42 255-297 104-145 (324)
164 1c4o_A DNA nucleotide excision 94.4 0.024 8.3E-07 59.7 4.0 44 99-142 490-538 (664)
165 3rc3_A ATP-dependent RNA helic 94.3 0.024 8.1E-07 59.7 3.7 44 99-143 373-430 (677)
166 1uaa_A REP helicase, protein ( 94.2 0.05 1.7E-06 57.4 6.1 65 133-205 7-72 (673)
167 2xau_A PRE-mRNA-splicing facto 94.2 0.013 4.5E-07 62.8 1.6 44 99-142 370-431 (773)
168 3e2i_A Thymidine kinase; Zn-bi 94.1 0.08 2.7E-06 47.1 6.2 40 149-191 28-67 (219)
169 2fsf_A Preprotein translocase 94.1 0.032 1.1E-06 59.3 4.3 46 98-143 489-571 (853)
170 3u4q_A ATP-dependent helicase/ 94.1 0.052 1.8E-06 61.4 6.1 62 133-202 15-79 (1232)
171 3kl4_A SRP54, signal recogniti 93.9 0.24 8.1E-06 49.1 9.9 134 149-310 97-235 (433)
172 1iqp_A RFCS; clamp loader, ext 93.8 0.21 7.1E-06 47.0 9.1 40 255-296 109-148 (327)
173 2orv_A Thymidine kinase; TP4A 93.8 0.14 4.7E-06 46.1 7.1 40 149-191 19-58 (234)
174 1pjr_A PCRA; DNA repair, DNA r 93.8 0.08 2.7E-06 56.4 6.6 70 125-205 11-81 (724)
175 3h4m_A Proteasome-activating n 93.6 0.52 1.8E-05 43.4 11.2 20 147-166 49-68 (285)
176 1w4r_A Thymidine kinase; type 93.6 0.074 2.5E-06 46.6 4.9 38 149-189 20-57 (195)
177 2whx_A Serine protease/ntpase/ 93.5 0.029 1E-06 58.5 2.6 44 98-142 401-464 (618)
178 1gku_B Reverse gyrase, TOP-RG; 93.4 0.13 4.6E-06 57.0 7.8 37 90-126 310-352 (1054)
179 2wv9_A Flavivirin protease NS2 93.4 0.033 1.1E-06 58.7 2.8 43 99-142 457-519 (673)
180 1sxj_C Activator 1 40 kDa subu 93.4 0.19 6.4E-06 48.0 7.9 39 255-295 109-147 (340)
181 1sxj_D Activator 1 41 kDa subu 93.3 0.17 5.9E-06 48.3 7.6 39 256-296 133-171 (353)
182 2fwr_A DNA repair protein RAD2 93.2 0.039 1.3E-06 55.4 3.0 46 98-143 394-439 (472)
183 2va8_A SSO2462, SKI2-type heli 93.2 0.042 1.4E-06 58.4 3.3 57 86-142 321-393 (715)
184 2qby_A CDC6 homolog 1, cell di 93.2 0.13 4.5E-06 49.5 6.6 18 149-166 45-62 (386)
185 2gno_A DNA polymerase III, gam 93.1 0.35 1.2E-05 45.6 9.3 39 255-295 81-119 (305)
186 1sxj_B Activator 1 37 kDa subu 93.1 0.15 5E-06 47.9 6.7 39 256-296 107-145 (323)
187 1a5t_A Delta prime, HOLB; zinc 93.0 0.33 1.1E-05 46.3 9.1 40 255-296 107-146 (334)
188 3o8b_A HCV NS3 protease/helica 93.0 0.026 8.8E-07 59.1 1.2 42 99-141 440-502 (666)
189 1njg_A DNA polymerase III subu 93.0 0.77 2.6E-05 40.4 11.1 39 256-296 126-164 (250)
190 1nkt_A Preprotein translocase 92.9 0.062 2.1E-06 57.5 4.0 46 98-143 508-605 (922)
191 1gm5_A RECG; helicase, replica 92.9 0.068 2.3E-06 57.2 4.3 54 89-142 629-684 (780)
192 2v6i_A RNA helicase; membrane, 92.5 0.051 1.7E-06 54.1 2.6 53 90-143 208-278 (431)
193 1g5t_A COB(I)alamin adenosyltr 92.5 1 3.4E-05 39.3 10.6 51 255-306 119-171 (196)
194 2xgj_A ATP-dependent RNA helic 92.4 0.094 3.2E-06 57.9 4.8 58 86-143 415-485 (1010)
195 2oca_A DAR protein, ATP-depend 92.3 0.044 1.5E-06 55.6 1.9 45 99-143 398-443 (510)
196 2zj8_A DNA helicase, putative 92.2 0.056 1.9E-06 57.5 2.6 58 99-157 321-386 (720)
197 2p6r_A Afuhel308 helicase; pro 92.0 0.067 2.3E-06 56.7 2.9 58 86-143 305-374 (702)
198 1w5s_A Origin recognition comp 91.8 0.58 2E-05 45.5 9.3 18 149-166 50-69 (412)
199 3h1t_A Type I site-specific re 91.6 0.11 3.7E-06 53.8 4.0 44 101-144 502-545 (590)
200 3l9o_A ATP-dependent RNA helic 91.6 0.06 2E-06 60.0 2.0 45 99-143 531-583 (1108)
201 1jr3_A DNA polymerase III subu 91.5 0.54 1.8E-05 45.1 8.6 39 255-295 118-156 (373)
202 1z5z_A Helicase of the SNF2/RA 91.2 0.11 3.9E-06 48.0 3.2 51 91-141 155-208 (271)
203 2r6a_A DNAB helicase, replicat 91.1 0.26 8.9E-06 49.2 6.0 42 145-188 199-240 (454)
204 4b4t_J 26S protease regulatory 91.1 1.4 4.7E-05 43.0 10.9 57 78-166 143-199 (405)
205 4ddu_A Reverse gyrase; topoiso 90.9 0.093 3.2E-06 58.5 2.6 30 98-127 354-388 (1104)
206 3dm5_A SRP54, signal recogniti 90.8 0.7 2.4E-05 45.8 8.6 57 149-212 100-158 (443)
207 3hjh_A Transcription-repair-co 90.6 0.92 3.2E-05 45.6 9.5 87 148-244 13-114 (483)
208 2q6t_A DNAB replication FORK h 90.1 0.36 1.2E-05 48.0 6.0 42 145-188 196-237 (444)
209 4b4t_K 26S protease regulatory 90.0 3.3 0.00011 40.7 12.7 18 149-166 206-223 (428)
210 4a1f_A DNAB helicase, replicat 89.9 0.46 1.6E-05 45.4 6.2 41 145-188 42-82 (338)
211 4a4z_A Antiviral helicase SKI2 89.9 0.099 3.4E-06 57.7 1.8 43 99-142 426-477 (997)
212 2w0m_A SSO2452; RECA, SSPF, un 89.6 0.91 3.1E-05 40.0 7.7 22 145-166 19-40 (235)
213 3dmq_A RNA polymerase-associat 89.5 0.17 6E-06 55.6 3.4 55 89-143 544-601 (968)
214 2ehv_A Hypothetical protein PH 89.4 0.71 2.4E-05 41.4 6.9 23 145-167 26-48 (251)
215 2chq_A Replication factor C sm 89.3 0.12 4.3E-06 48.4 1.8 16 151-166 40-55 (319)
216 4a15_A XPD helicase, ATP-depen 89.2 1.4 4.7E-05 45.9 9.7 116 287-410 374-500 (620)
217 3hu3_A Transitional endoplasmi 88.9 2.4 8.3E-05 42.6 11.1 18 149-166 238-255 (489)
218 1n0w_A DNA repair protein RAD5 88.7 1.8 6.3E-05 38.4 9.2 44 145-188 20-66 (243)
219 3io5_A Recombination and repai 87.3 0.68 2.3E-05 43.7 5.3 52 148-204 28-79 (333)
220 2eyq_A TRCF, transcription-rep 87.2 0.36 1.2E-05 54.1 4.0 45 98-142 864-909 (1151)
221 2px0_A Flagellar biosynthesis 87.0 1.5 5.1E-05 40.9 7.6 20 148-167 104-123 (296)
222 2zpa_A Uncharacterized protein 86.7 0.47 1.6E-05 49.5 4.2 96 151-299 194-289 (671)
223 2l82_A Designed protein OR32; 86.7 4.2 0.00014 31.2 8.4 47 357-403 5-51 (162)
224 3cmu_A Protein RECA, recombina 85.8 0.62 2.1E-05 54.5 5.0 44 145-191 1423-1466(2050)
225 3hr8_A Protein RECA; alpha and 85.5 0.8 2.7E-05 44.1 4.9 43 145-190 57-99 (356)
226 3co5_A Putative two-component 83.9 0.44 1.5E-05 39.1 2.0 18 148-165 26-43 (143)
227 1e9r_A Conjugal transfer prote 82.2 1.2 4E-05 44.0 4.7 44 148-194 52-95 (437)
228 3gk5_A Uncharacterized rhodane 82.2 1.1 3.6E-05 34.8 3.6 44 347-390 47-91 (108)
229 1z63_A Helicase of the SNF2/RA 81.8 0.74 2.5E-05 46.2 3.2 52 91-142 384-438 (500)
230 3pxi_A Negative regulator of g 81.5 3.2 0.00011 44.1 8.2 16 151-166 523-538 (758)
231 1xp8_A RECA protein, recombina 81.5 2.2 7.6E-05 41.1 6.3 42 145-189 70-111 (366)
232 3foj_A Uncharacterized protein 81.4 1.1 3.9E-05 34.0 3.4 38 353-390 55-92 (100)
233 2dr3_A UPF0273 protein PH0284; 80.9 1.8 6E-05 38.6 5.1 55 145-203 19-73 (247)
234 4b4t_M 26S protease regulatory 80.6 0.91 3.1E-05 44.9 3.2 57 78-166 176-232 (434)
235 1p9r_A General secretion pathw 80.4 1.3 4.3E-05 43.7 4.2 27 148-175 166-192 (418)
236 3eme_A Rhodanese-like domain p 80.2 1.1 3.9E-05 34.2 3.1 37 353-389 55-91 (103)
237 3cf0_A Transitional endoplasmi 79.8 1 3.5E-05 42.1 3.1 20 147-166 47-66 (301)
238 3iwh_A Rhodanese-like domain p 79.6 1.2 4.2E-05 34.3 3.1 37 353-389 55-91 (103)
239 3e70_C DPA, signal recognition 79.6 11 0.00039 35.4 10.5 54 257-310 212-265 (328)
240 2w58_A DNAI, primosome compone 79.2 1.9 6.6E-05 37.2 4.6 24 150-174 55-78 (202)
241 3jvv_A Twitching mobility prot 78.8 1.6 5.4E-05 42.0 4.2 28 148-176 122-149 (356)
242 1ls1_A Signal recognition part 78.3 14 0.00048 34.2 10.5 19 148-166 97-115 (295)
243 1jbk_A CLPB protein; beta barr 78.3 0.91 3.1E-05 38.3 2.1 18 149-166 43-60 (195)
244 1wv9_A Rhodanese homolog TT165 78.2 1.6 5.4E-05 32.7 3.3 35 355-389 54-88 (94)
245 2ewv_A Twitching motility prot 77.9 1.8 6E-05 41.9 4.3 19 147-165 134-152 (372)
246 3crv_A XPD/RAD3 related DNA he 77.5 20 0.00069 36.3 12.4 53 353-413 392-444 (551)
247 2qgz_A Helicase loader, putati 77.0 2.5 8.7E-05 39.6 5.0 19 149-167 152-170 (308)
248 1kgd_A CASK, peripheral plasma 76.9 1 3.6E-05 38.4 2.1 19 148-166 4-22 (180)
249 2oap_1 GSPE-2, type II secreti 76.8 1.7 5.9E-05 43.9 4.0 18 148-165 259-276 (511)
250 2i1q_A DNA repair and recombin 76.6 3.4 0.00012 38.8 5.8 59 145-203 94-166 (322)
251 1z3i_X Similar to RAD54-like; 76.5 1.7 5.8E-05 45.4 3.9 42 101-142 472-513 (644)
252 2p65_A Hypothetical protein PF 75.8 0.89 3E-05 38.3 1.3 18 149-166 43-60 (187)
253 3eie_A Vacuolar protein sortin 75.4 1.5 5.1E-05 41.3 3.0 18 149-166 51-68 (322)
254 3iij_A Coilin-interacting nucl 75.0 1.1 3.7E-05 38.1 1.7 22 146-167 8-29 (180)
255 2zts_A Putative uncharacterize 74.8 2.9 9.8E-05 37.2 4.6 56 145-203 26-81 (251)
256 3a8t_A Adenylate isopentenyltr 74.5 1.5 5.1E-05 41.8 2.6 18 149-166 40-57 (339)
257 3vaa_A Shikimate kinase, SK; s 74.4 1.3 4.5E-05 38.3 2.1 20 147-166 23-42 (199)
258 3g5j_A Putative ATP/GTP bindin 73.8 4 0.00014 32.4 4.8 37 355-391 90-127 (134)
259 3trf_A Shikimate kinase, SK; a 73.7 1.4 4.9E-05 37.4 2.1 19 149-167 5-23 (185)
260 2vl7_A XPD; helicase, unknown 73.6 4.2 0.00014 41.4 5.9 64 345-415 376-439 (540)
261 1w36_B RECB, exodeoxyribonucle 73.5 4.5 0.00015 45.4 6.6 55 148-203 16-79 (1180)
262 2qmh_A HPR kinase/phosphorylas 73.4 1.8 6E-05 38.0 2.6 18 148-165 33-50 (205)
263 2eyu_A Twitching motility prot 73.3 1.7 5.9E-05 39.7 2.7 20 146-165 22-41 (261)
264 2gza_A Type IV secretion syste 73.2 2.6 8.9E-05 40.5 4.1 19 147-165 173-191 (361)
265 3b9p_A CG5977-PA, isoform A; A 73.1 1.4 4.9E-05 40.7 2.1 18 149-166 54-71 (297)
266 1qhx_A CPT, protein (chloramph 73.0 1.5 5.1E-05 37.0 2.1 18 149-166 3-20 (178)
267 3hix_A ALR3790 protein; rhodan 72.9 2.3 7.9E-05 32.7 3.0 38 353-390 51-89 (106)
268 2qor_A Guanylate kinase; phosp 72.6 1.5 5.2E-05 38.1 2.0 22 145-166 8-29 (204)
269 3u4q_B ATP-dependent helicase/ 72.4 2.7 9.1E-05 47.2 4.5 39 153-191 5-43 (1166)
270 4ag6_A VIRB4 ATPase, type IV s 72.3 2.9 9.9E-05 40.5 4.2 42 148-192 34-75 (392)
271 3hws_A ATP-dependent CLP prote 72.3 1.5 5.2E-05 42.0 2.2 19 148-166 50-68 (363)
272 3exa_A TRNA delta(2)-isopenten 72.3 1.5 5.2E-05 41.2 2.1 17 150-166 4-20 (322)
273 2z43_A DNA repair and recombin 72.2 5 0.00017 37.7 5.8 59 145-203 103-165 (324)
274 3uk6_A RUVB-like 2; hexameric 72.1 1.5 5.2E-05 41.9 2.1 18 149-166 70-87 (368)
275 2qz4_A Paraplegin; AAA+, SPG7, 71.9 1.6 5.5E-05 39.3 2.1 18 149-166 39-56 (262)
276 3cmu_A Protein RECA, recombina 71.9 6.4 0.00022 46.3 7.4 49 145-197 1077-1125(2050)
277 2bjv_A PSP operon transcriptio 71.7 1.7 5.7E-05 39.5 2.2 19 148-166 28-46 (265)
278 1ofh_A ATP-dependent HSL prote 71.6 1.7 5.6E-05 40.3 2.2 18 149-166 50-67 (310)
279 4b4t_L 26S protease subunit RP 71.5 2 6.7E-05 42.5 2.7 18 149-166 215-232 (437)
280 1lvg_A Guanylate kinase, GMP k 71.4 2.2 7.4E-05 37.1 2.8 19 148-166 3-21 (198)
281 2fsx_A RV0390, COG0607: rhodan 71.4 3.8 0.00013 33.6 4.2 37 353-389 79-116 (148)
282 2ius_A DNA translocase FTSK; n 71.3 4.3 0.00015 41.0 5.2 42 148-189 166-208 (512)
283 2jtq_A Phage shock protein E; 71.2 9.2 0.00031 27.7 5.9 36 353-389 40-76 (85)
284 3ney_A 55 kDa erythrocyte memb 71.1 2.1 7.3E-05 37.3 2.6 21 146-166 16-36 (197)
285 3nhv_A BH2092 protein; alpha-b 71.0 3 0.0001 34.2 3.4 37 354-390 72-110 (144)
286 2k0z_A Uncharacterized protein 71.0 5 0.00017 31.0 4.6 38 353-390 55-92 (110)
287 3foz_A TRNA delta(2)-isopenten 70.9 1.7 5.8E-05 40.8 2.1 16 151-166 12-27 (316)
288 1zp6_A Hypothetical protein AT 70.8 1.5 5.1E-05 37.5 1.6 20 146-165 6-25 (191)
289 2l82_A Designed protein OR32; 70.8 33 0.0011 26.2 9.4 82 343-428 66-149 (162)
290 3tau_A Guanylate kinase, GMP k 70.6 2.3 7.9E-05 37.1 2.8 19 148-166 7-25 (208)
291 2j41_A Guanylate kinase; GMP, 70.4 1.8 6.2E-05 37.3 2.1 20 147-166 4-23 (207)
292 2cvh_A DNA repair and recombin 70.1 2.6 8.8E-05 36.7 3.0 37 145-187 16-52 (220)
293 4b4t_H 26S protease regulatory 70.0 2.1 7E-05 42.6 2.5 18 149-166 243-260 (467)
294 3flh_A Uncharacterized protein 70.0 2 6.7E-05 34.2 2.0 44 347-390 63-109 (124)
295 4gp7_A Metallophosphoesterase; 69.9 2.2 7.5E-05 36.0 2.4 22 146-167 6-27 (171)
296 1qxn_A SUD, sulfide dehydrogen 69.8 2.9 9.9E-05 33.9 3.0 38 353-390 81-119 (137)
297 2pt7_A CAG-ALFA; ATPase, prote 69.6 2.9 0.0001 39.6 3.5 19 147-165 169-187 (330)
298 1ex7_A Guanylate kinase; subst 69.5 2 6.8E-05 37.1 2.1 16 150-165 2-17 (186)
299 1kag_A SKI, shikimate kinase I 69.5 2.1 7.1E-05 35.8 2.2 18 149-166 4-21 (173)
300 1tq1_A AT5G66040, senescence-a 69.4 3.3 0.00011 33.1 3.2 38 353-390 81-119 (129)
301 2r62_A Cell division protease 69.3 1.7 5.7E-05 39.5 1.6 18 149-166 44-61 (268)
302 1lv7_A FTSH; alpha/beta domain 69.2 1.9 6.5E-05 38.9 2.0 18 149-166 45-62 (257)
303 1y63_A LMAJ004144AAA protein; 69.1 2.1 7.1E-05 36.6 2.1 19 148-166 9-27 (184)
304 3lw7_A Adenylate kinase relate 68.8 2 6.8E-05 35.7 1.9 16 151-166 3-18 (179)
305 1xwi_A SKD1 protein; VPS4B, AA 68.6 2 7E-05 40.5 2.1 18 149-166 45-62 (322)
306 1gmx_A GLPE protein; transfera 68.5 2.8 9.5E-05 32.2 2.6 39 353-391 57-96 (108)
307 4b4t_I 26S protease regulatory 68.3 2.8 9.7E-05 41.2 3.1 57 78-166 177-233 (437)
308 3bh0_A DNAB-like replicative h 68.1 4.9 0.00017 37.7 4.6 54 145-202 64-117 (315)
309 2ffh_A Protein (FFH); SRP54, s 67.8 38 0.0013 33.1 11.1 44 148-194 97-142 (425)
310 1np6_A Molybdopterin-guanine d 67.8 6.2 0.00021 33.5 4.8 23 151-174 8-30 (174)
311 2ze6_A Isopentenyl transferase 67.6 2.1 7.2E-05 38.8 1.9 16 151-166 3-18 (253)
312 1kht_A Adenylate kinase; phosp 67.4 2.4 8.1E-05 36.0 2.1 18 149-166 3-20 (192)
313 1v5w_A DMC1, meiotic recombina 67.2 5.3 0.00018 37.9 4.8 45 146-190 119-166 (343)
314 3tr0_A Guanylate kinase, GMP k 67.2 2.4 8.1E-05 36.6 2.1 19 148-166 6-24 (205)
315 1tue_A Replication protein E1; 67.2 2.7 9.3E-05 37.0 2.4 23 150-173 59-81 (212)
316 1ojl_A Transcriptional regulat 66.9 2.4 8.1E-05 39.6 2.2 19 148-166 24-42 (304)
317 3a00_A Guanylate kinase, GMP k 66.5 2.6 8.8E-05 36.0 2.2 17 150-166 2-18 (186)
318 2r2a_A Uncharacterized protein 66.3 4.2 0.00014 35.4 3.5 18 151-168 7-24 (199)
319 3t15_A Ribulose bisphosphate c 66.3 2.3 8E-05 39.4 2.0 18 149-166 36-53 (293)
320 2hhg_A Hypothetical protein RP 66.2 3.7 0.00013 33.1 3.0 37 354-390 86-123 (139)
321 2oxc_A Probable ATP-dependent 65.9 9.7 0.00033 33.4 6.0 56 353-415 91-151 (230)
322 3cm0_A Adenylate kinase; ATP-b 65.9 2.1 7.3E-05 36.2 1.5 19 148-166 3-21 (186)
323 3ber_A Probable ATP-dependent 65.8 27 0.00092 31.0 9.1 57 353-415 110-170 (249)
324 1cr0_A DNA primase/helicase; R 65.8 5.3 0.00018 36.8 4.4 41 145-187 31-71 (296)
325 1xjc_A MOBB protein homolog; s 65.6 6.7 0.00023 33.2 4.5 24 151-175 6-29 (169)
326 3d1p_A Putative thiosulfate su 65.5 4.2 0.00014 32.8 3.2 38 353-390 90-128 (139)
327 1z6g_A Guanylate kinase; struc 65.4 2.8 9.4E-05 37.0 2.2 20 147-166 21-40 (218)
328 1um8_A ATP-dependent CLP prote 65.4 2.6 8.9E-05 40.5 2.2 18 149-166 72-89 (376)
329 1nlf_A Regulatory protein REPA 65.3 11 0.00036 34.4 6.3 25 144-168 25-49 (279)
330 1knq_A Gluconate kinase; ALFA/ 65.2 2.6 8.9E-05 35.4 1.9 18 149-166 8-25 (175)
331 2qp9_X Vacuolar protein sortin 65.2 2.6 9.1E-05 40.3 2.2 18 149-166 84-101 (355)
332 2c9o_A RUVB-like 1; hexameric 65.1 3.2 0.00011 41.2 2.8 19 149-167 63-81 (456)
333 2iut_A DNA translocase FTSK; n 65.1 6.3 0.00022 40.2 5.0 42 149-190 214-256 (574)
334 1hqc_A RUVB; extended AAA-ATPa 65.0 2.4 8.2E-05 39.6 1.8 18 149-166 38-55 (324)
335 3bgw_A DNAB-like replicative h 64.9 5.9 0.0002 39.2 4.7 40 145-187 193-232 (444)
336 2r44_A Uncharacterized protein 64.9 2.2 7.7E-05 40.1 1.6 22 145-166 42-63 (331)
337 3pfi_A Holliday junction ATP-d 64.9 2.6 9E-05 39.7 2.1 17 150-166 56-72 (338)
338 3h11_B Caspase-8; cell death, 64.7 20 0.00068 32.7 7.9 50 353-403 16-86 (271)
339 3kb2_A SPBC2 prophage-derived 64.3 2.8 9.5E-05 34.8 1.9 16 151-166 3-18 (173)
340 4eun_A Thermoresistant glucoki 64.3 2.9 0.0001 36.1 2.1 19 148-166 28-46 (200)
341 1s96_A Guanylate kinase, GMP k 64.1 2.9 0.0001 37.0 2.1 22 145-166 12-33 (219)
342 3d8b_A Fidgetin-like protein 1 64.0 2.8 9.7E-05 40.1 2.1 18 149-166 117-134 (357)
343 3vfd_A Spastin; ATPase, microt 63.7 2.9 9.8E-05 40.5 2.1 18 149-166 148-165 (389)
344 2v3c_C SRP54, signal recogniti 63.5 5.2 0.00018 39.4 4.0 18 150-167 100-117 (432)
345 3crm_A TRNA delta(2)-isopenten 63.4 3.5 0.00012 38.9 2.6 17 150-166 6-22 (323)
346 1ly1_A Polynucleotide kinase; 63.4 2.9 0.0001 35.0 1.9 16 151-166 4-19 (181)
347 4fcw_A Chaperone protein CLPB; 63.1 2.8 9.6E-05 38.8 1.9 17 150-166 48-64 (311)
348 3p32_A Probable GTPase RV1496/ 62.9 83 0.0028 29.6 12.4 18 149-166 79-96 (355)
349 3nbx_X ATPase RAVA; AAA+ ATPas 62.6 3.1 0.0001 41.9 2.1 24 143-166 35-58 (500)
350 2h54_A Caspase-1; allosteric s 62.5 35 0.0012 28.9 8.6 48 354-402 43-101 (178)
351 2qt1_A Nicotinamide riboside k 62.5 3.4 0.00011 35.8 2.2 24 143-166 15-38 (207)
352 3d3q_A TRNA delta(2)-isopenten 62.4 3.8 0.00013 39.0 2.6 16 151-166 9-24 (340)
353 1znw_A Guanylate kinase, GMP k 62.2 3.4 0.00012 35.9 2.1 22 145-166 16-37 (207)
354 3ice_A Transcription terminati 62.1 5.2 0.00018 38.9 3.5 23 145-167 170-192 (422)
355 3ilm_A ALR3790 protein; rhodan 61.7 5.2 0.00018 32.6 3.1 38 353-390 55-93 (141)
356 3eph_A TRNA isopentenyltransfe 61.6 3.9 0.00013 39.9 2.6 16 151-166 4-19 (409)
357 1vee_A Proline-rich protein fa 61.4 4.6 0.00016 32.4 2.7 36 354-389 74-110 (134)
358 1ixz_A ATP-dependent metallopr 61.2 3.4 0.00012 37.1 2.0 16 151-166 51-66 (254)
359 3uie_A Adenylyl-sulfate kinase 61.0 3.4 0.00012 35.7 1.9 19 148-166 24-42 (200)
360 3lnc_A Guanylate kinase, GMP k 60.9 2.9 9.9E-05 37.0 1.5 22 145-166 23-44 (231)
361 2bdt_A BH3686; alpha-beta prot 60.5 3.1 0.00011 35.4 1.5 18 149-166 2-19 (189)
362 2rhm_A Putative kinase; P-loop 60.2 3.6 0.00012 35.0 1.9 18 149-166 5-22 (193)
363 2v54_A DTMP kinase, thymidylat 60.2 3.7 0.00013 35.3 2.0 19 148-166 3-21 (204)
364 1tev_A UMP-CMP kinase; ploop, 60.0 3.6 0.00012 34.9 1.9 18 149-166 3-20 (196)
365 2zan_A Vacuolar protein sortin 59.1 3.9 0.00013 40.5 2.1 18 149-166 167-184 (444)
366 1g8p_A Magnesium-chelatase 38 58.9 2.6 8.8E-05 39.8 0.8 18 149-166 45-62 (350)
367 4a74_A DNA repair and recombin 58.6 5.6 0.00019 34.7 3.0 23 145-167 21-43 (231)
368 2j37_W Signal recognition part 58.6 70 0.0024 32.0 11.3 37 149-188 101-137 (504)
369 3fe2_A Probable ATP-dependent 58.5 26 0.0009 30.8 7.6 56 354-415 102-161 (242)
370 1m7g_A Adenylylsulfate kinase; 58.3 2 6.7E-05 37.6 -0.2 23 144-166 20-42 (211)
371 2zr9_A Protein RECA, recombina 58.3 10 0.00035 36.1 4.9 42 145-189 57-98 (349)
372 3t61_A Gluconokinase; PSI-biol 58.0 4.1 0.00014 35.1 1.9 18 149-166 18-35 (202)
373 3p45_A Caspase-6; protease, hu 58.0 61 0.0021 27.4 9.2 51 353-404 43-107 (179)
374 1j8m_F SRP54, signal recogniti 58.0 46 0.0016 30.6 9.3 19 149-167 98-116 (297)
375 1qtn_A Caspase-8; apoptosis, d 58.0 39 0.0013 28.2 7.9 40 364-404 54-93 (164)
376 1gvn_B Zeta; postsegregational 57.9 3.8 0.00013 37.9 1.8 18 149-166 33-50 (287)
377 1zd8_A GTP:AMP phosphotransfer 57.7 4.4 0.00015 35.7 2.1 19 148-166 6-24 (227)
378 2l8b_A Protein TRAI, DNA helic 57.5 9.5 0.00033 32.7 4.0 52 142-195 42-95 (189)
379 1sky_E F1-ATPase, F1-ATP synth 57.3 1.2E+02 0.004 30.1 12.4 25 143-167 145-169 (473)
380 2c95_A Adenylate kinase 1; tra 57.2 4.7 0.00016 34.3 2.1 19 148-166 8-26 (196)
381 1u94_A RECA protein, recombina 57.0 11 0.00037 36.0 4.9 41 145-188 59-99 (356)
382 4f67_A UPF0176 protein LPG2838 57.0 10 0.00035 34.6 4.5 48 344-391 171-219 (265)
383 1via_A Shikimate kinase; struc 56.9 4.7 0.00016 33.8 2.0 17 150-166 5-21 (175)
384 3c8u_A Fructokinase; YP_612366 56.9 4.2 0.00014 35.3 1.8 18 148-165 21-38 (208)
385 2pez_A Bifunctional 3'-phospho 56.6 4.5 0.00015 34.0 1.9 19 148-166 4-22 (179)
386 3asz_A Uridine kinase; cytidin 56.5 4.5 0.00015 35.0 1.9 18 149-166 6-23 (211)
387 2iyv_A Shikimate kinase, SK; t 56.3 5.1 0.00017 33.8 2.2 17 150-166 3-19 (184)
388 1urh_A 3-mercaptopyruvate sulf 56.2 14 0.00048 33.6 5.4 39 353-391 229-268 (280)
389 3tqc_A Pantothenate kinase; bi 56.2 10 0.00036 35.6 4.5 15 152-166 95-109 (321)
390 1rj9_A FTSY, signal recognitio 56.2 10 0.00035 35.3 4.5 19 148-166 101-119 (304)
391 1nij_A Hypothetical protein YJ 56.1 7.4 0.00025 36.4 3.5 14 152-165 7-20 (318)
392 2plr_A DTMP kinase, probable t 56.1 4.5 0.00015 34.8 1.8 19 148-166 3-21 (213)
393 2w00_A HSDR, R.ECOR124I; ATP-b 55.9 6.9 0.00024 43.1 3.6 45 99-144 650-694 (1038)
394 1iy2_A ATP-dependent metallopr 55.9 4.7 0.00016 36.8 2.0 16 151-166 75-90 (278)
395 1f2t_A RAD50 ABC-ATPase; DNA d 55.8 4.9 0.00017 33.1 1.9 16 151-166 25-40 (149)
396 3fb4_A Adenylate kinase; psych 55.6 4.9 0.00017 34.9 2.0 17 151-167 2-18 (216)
397 3tif_A Uncharacterized ABC tra 55.4 5.4 0.00018 35.7 2.3 19 147-165 29-47 (235)
398 2x8a_A Nuclear valosin-contain 55.4 4.7 0.00016 37.0 1.9 16 151-166 46-61 (274)
399 1zak_A Adenylate kinase; ATP:A 55.2 5.2 0.00018 35.0 2.1 18 149-166 5-22 (222)
400 1aky_A Adenylate kinase; ATP:A 55.2 5.2 0.00018 35.0 2.1 18 149-166 4-21 (220)
401 3h11_A CAsp8 and FADD-like apo 55.1 5.8 0.0002 36.4 2.4 50 353-403 42-91 (272)
402 3cf2_A TER ATPase, transitiona 55.1 13 0.00045 39.6 5.5 18 149-166 511-528 (806)
403 2bwj_A Adenylate kinase 5; pho 55.0 5.3 0.00018 34.0 2.1 18 149-166 12-29 (199)
404 1zuh_A Shikimate kinase; alpha 54.8 5.3 0.00018 33.2 2.0 18 150-167 8-25 (168)
405 1qvr_A CLPB protein; coiled co 54.5 86 0.0029 33.6 12.0 18 149-166 191-208 (854)
406 3dl0_A Adenylate kinase; phosp 54.4 5.3 0.00018 34.8 2.0 16 151-166 2-17 (216)
407 1in4_A RUVB, holliday junction 54.3 6.4 0.00022 37.1 2.8 17 150-166 52-68 (334)
408 1pzn_A RAD51, DNA repair and r 54.2 11 0.00036 36.0 4.3 43 146-188 128-173 (349)
409 1e6c_A Shikimate kinase; phosp 54.1 5.6 0.00019 33.0 2.1 17 150-166 3-19 (173)
410 3nwj_A ATSK2; P loop, shikimat 54.1 5.9 0.0002 35.8 2.3 22 145-166 44-65 (250)
411 3e4c_A Caspase-1; zymogen, inf 54.1 27 0.00091 32.5 6.9 47 355-402 61-118 (302)
412 3mwy_W Chromo domain-containin 53.8 6.5 0.00022 42.1 3.0 41 101-141 628-668 (800)
413 1ye8_A Protein THEP1, hypothet 53.8 7.1 0.00024 33.1 2.7 16 151-166 2-17 (178)
414 2cdn_A Adenylate kinase; phosp 53.7 5.8 0.0002 34.1 2.1 18 149-166 20-37 (201)
415 1nks_A Adenylate kinase; therm 53.5 5.4 0.00018 33.7 1.9 16 151-166 3-18 (194)
416 3b85_A Phosphate starvation-in 53.3 3.6 0.00012 36.1 0.7 25 142-166 15-39 (208)
417 2yvu_A Probable adenylyl-sulfa 53.3 5.5 0.00019 33.7 1.9 19 148-166 12-30 (186)
418 2wwf_A Thymidilate kinase, put 52.9 6 0.00021 34.1 2.1 20 147-166 8-27 (212)
419 3tg1_B Dual specificity protei 52.8 8.8 0.0003 31.7 3.0 36 354-389 93-137 (158)
420 3lda_A DNA repair protein RAD5 52.7 12 0.00041 36.4 4.4 43 146-188 175-220 (400)
421 3pvs_A Replication-associated 52.7 6.8 0.00023 38.8 2.7 17 150-166 51-67 (447)
422 2cbz_A Multidrug resistance-as 52.6 6.3 0.00022 35.2 2.3 20 146-165 28-47 (237)
423 3pxg_A Negative regulator of g 52.6 5.7 0.00019 39.5 2.1 18 149-166 201-218 (468)
424 1cke_A CK, MSSA, protein (cyti 52.5 7.8 0.00027 33.8 2.8 17 150-166 6-22 (227)
425 1sxj_A Activator 1 95 kDa subu 52.5 7 0.00024 39.4 2.8 42 256-299 148-190 (516)
426 1g41_A Heat shock protein HSLU 52.4 5.9 0.0002 39.1 2.2 18 149-166 50-67 (444)
427 1ak2_A Adenylate kinase isoenz 52.3 6 0.00021 35.0 2.1 18 149-166 16-33 (233)
428 1qf9_A UMP/CMP kinase, protein 52.2 5.8 0.0002 33.5 1.9 17 150-166 7-23 (194)
429 1sgw_A Putative ABC transporte 52.2 7.3 0.00025 34.3 2.6 20 146-165 32-51 (214)
430 3kta_A Chromosome segregation 52.2 8 0.00027 32.5 2.8 16 151-166 28-43 (182)
431 1t6n_A Probable ATP-dependent 52.0 25 0.00085 30.3 6.1 43 355-397 83-130 (220)
432 3l0o_A Transcription terminati 51.9 11 0.00038 36.6 3.9 22 145-166 171-192 (427)
433 1nn5_A Similar to deoxythymidy 51.9 6.3 0.00022 34.0 2.1 19 148-166 8-26 (215)
434 2pt5_A Shikimate kinase, SK; a 51.7 6.3 0.00022 32.5 2.0 16 151-166 2-17 (168)
435 2vhj_A Ntpase P4, P4; non- hyd 51.6 10 0.00034 35.8 3.5 23 145-167 119-141 (331)
436 3b9q_A Chloroplast SRP recepto 51.5 11 0.00038 35.0 3.9 19 148-166 99-117 (302)
437 2i3b_A HCR-ntpase, human cance 51.5 8.5 0.00029 33.1 2.8 42 254-299 103-146 (189)
438 2ff7_A Alpha-hemolysin translo 51.5 7.4 0.00025 35.0 2.5 20 146-165 32-51 (247)
439 3od5_A Caspase-6; caspase doma 51.5 46 0.0016 30.4 8.0 49 354-403 21-83 (278)
440 2pze_A Cystic fibrosis transme 51.4 7.4 0.00025 34.5 2.5 20 146-165 31-50 (229)
441 2vli_A Antibiotic resistance p 51.4 5 0.00017 33.7 1.3 19 148-166 4-22 (183)
442 2if2_A Dephospho-COA kinase; a 51.3 6.3 0.00022 33.8 2.0 16 151-166 3-18 (204)
443 3qf7_A RAD50; ABC-ATPase, ATPa 51.2 5.9 0.0002 38.0 1.9 37 379-415 304-344 (365)
444 2ce7_A Cell division protein F 51.0 6.1 0.00021 39.5 2.0 17 150-166 50-66 (476)
445 3m6a_A ATP-dependent protease 50.9 6.2 0.00021 40.1 2.1 19 148-166 107-125 (543)
446 2pcj_A ABC transporter, lipopr 50.8 7.6 0.00026 34.3 2.5 20 146-165 27-46 (224)
447 1f9v_A Kinesin-like protein KA 50.8 5 0.00017 38.3 1.3 25 142-166 76-102 (347)
448 3aez_A Pantothenate kinase; tr 50.7 14 0.00049 34.4 4.5 21 146-166 87-107 (312)
449 3gfo_A Cobalt import ATP-bindi 50.6 7.7 0.00026 35.6 2.5 20 146-165 31-50 (275)
450 2v9p_A Replication protein E1; 50.2 8.6 0.00029 35.9 2.8 20 146-165 123-142 (305)
451 1urh_A 3-mercaptopyruvate sulf 50.0 15 0.00051 33.4 4.5 38 353-390 85-124 (280)
452 1m72_A Caspase-1; caspase, cys 50.0 50 0.0017 30.0 7.9 48 355-403 33-93 (272)
453 1jjv_A Dephospho-COA kinase; P 49.9 6.6 0.00023 33.8 1.9 16 151-166 4-19 (206)
454 1ukz_A Uridylate kinase; trans 49.9 6.7 0.00023 33.6 1.9 17 150-166 16-32 (203)
455 1vec_A ATP-dependent RNA helic 49.8 28 0.00094 29.5 6.0 56 354-415 71-131 (206)
456 3be4_A Adenylate kinase; malar 49.4 7.3 0.00025 34.0 2.1 18 149-166 5-22 (217)
457 1mv5_A LMRA, multidrug resista 49.4 7 0.00024 35.0 2.0 20 146-165 25-44 (243)
458 2ghi_A Transport protein; mult 49.4 7.6 0.00026 35.3 2.3 20 146-165 43-62 (260)
459 2dko_A Caspase-3; low barrier 49.3 28 0.00097 28.4 5.6 49 355-404 17-79 (146)
460 1g6h_A High-affinity branched- 49.2 8.3 0.00029 34.9 2.5 20 146-165 30-49 (257)
461 3mm4_A Histidine kinase homolo 49.2 1.2E+02 0.0041 25.6 11.3 60 143-202 14-83 (206)
462 1ji0_A ABC transporter; ATP bi 49.2 8.4 0.00029 34.4 2.5 20 146-165 29-48 (240)
463 4g1u_C Hemin import ATP-bindin 49.1 8.3 0.00028 35.1 2.5 20 146-165 34-53 (266)
464 2bbw_A Adenylate kinase 4, AK4 48.9 7.4 0.00025 34.7 2.1 18 149-166 27-44 (246)
465 1u0j_A DNA replication protein 48.7 9.2 0.00032 34.9 2.7 17 151-167 106-122 (267)
466 2p5t_B PEZT; postsegregational 48.7 5.3 0.00018 36.0 1.1 19 148-166 31-49 (253)
467 2xxa_A Signal recognition part 48.5 88 0.003 30.5 10.0 44 150-195 101-146 (433)
468 4e22_A Cytidylate kinase; P-lo 48.4 9.7 0.00033 34.2 2.8 19 148-166 26-44 (252)
469 2r8r_A Sensor protein; KDPD, P 48.4 18 0.00063 32.0 4.5 20 151-170 8-27 (228)
470 3a4m_A L-seryl-tRNA(SEC) kinas 48.3 7.1 0.00024 35.3 1.9 18 149-166 4-21 (260)
471 3hgt_A HDA1 complex subunit 3; 48.3 24 0.00081 33.2 5.5 54 338-391 107-162 (328)
472 1e4v_A Adenylate kinase; trans 48.3 7.5 0.00026 33.8 2.0 16 151-166 2-17 (214)
473 2qi9_C Vitamin B12 import ATP- 48.2 8.9 0.0003 34.6 2.5 20 146-165 23-42 (249)
474 2jaq_A Deoxyguanosine kinase; 48.1 7.3 0.00025 33.2 1.9 16 151-166 2-17 (205)
475 1tf7_A KAIC; homohexamer, hexa 48.0 17 0.00059 36.5 4.9 40 146-188 278-317 (525)
476 3tqf_A HPR(Ser) kinase; transf 47.9 10 0.00034 32.4 2.6 20 147-166 14-33 (181)
477 2pbr_A DTMP kinase, thymidylat 47.6 7.6 0.00026 32.8 1.9 16 151-166 2-17 (195)
478 2nq2_C Hypothetical ABC transp 47.6 9.2 0.00031 34.6 2.5 20 146-165 28-47 (253)
479 3cmw_A Protein RECA, recombina 47.5 10 0.00034 44.0 3.3 55 145-205 1427-1481(1706)
480 3auy_A DNA double-strand break 47.4 7.2 0.00025 37.4 1.9 15 152-166 28-42 (371)
481 2z0h_A DTMP kinase, thymidylat 47.3 7.7 0.00026 32.9 1.9 15 152-166 3-17 (197)
482 3bfn_A Kinesin-like protein KI 47.2 5.4 0.00019 38.6 0.9 25 142-166 90-116 (388)
483 3tlx_A Adenylate kinase 2; str 47.2 7.6 0.00026 34.7 1.9 19 148-166 28-46 (243)
484 1uf9_A TT1252 protein; P-loop, 47.0 7.8 0.00027 33.0 1.9 17 150-166 9-25 (203)
485 3pxi_A Negative regulator of g 46.7 7.7 0.00026 41.2 2.1 18 149-166 201-218 (758)
486 3nh6_A ATP-binding cassette SU 46.4 8.2 0.00028 36.0 2.0 20 146-165 77-96 (306)
487 1b0u_A Histidine permease; ABC 46.3 9 0.00031 34.8 2.3 20 146-165 29-48 (262)
488 2j32_A Caspase-3; Pro-caspase3 46.3 55 0.0019 29.3 7.6 49 355-404 17-79 (250)
489 2nn3_C Caspase-1; cysteine pro 46.3 68 0.0023 29.8 8.3 49 354-403 60-121 (310)
490 2fp3_A Caspase NC; apoptosis, 46.2 39 0.0013 31.6 6.7 48 354-402 61-120 (316)
491 1htw_A HI0065; nucleotide-bind 46.2 7.8 0.00027 32.2 1.7 19 147-165 31-49 (158)
492 2ixe_A Antigen peptide transpo 46.1 9.1 0.00031 35.0 2.3 20 146-165 42-61 (271)
493 2og2_A Putative signal recogni 45.9 15 0.00052 35.0 3.9 19 148-166 156-174 (359)
494 1ypw_A Transitional endoplasmi 45.8 7.6 0.00026 41.6 1.9 20 147-166 236-255 (806)
495 2yz2_A Putative ABC transporte 45.8 9.3 0.00032 34.8 2.3 19 147-165 31-49 (266)
496 4ehd_A Caspase-3; caspase, apo 45.7 56 0.0019 29.8 7.6 39 364-403 68-106 (277)
497 2f1r_A Molybdopterin-guanine d 45.7 6.9 0.00023 33.1 1.3 16 151-166 4-19 (171)
498 2d2e_A SUFC protein; ABC-ATPas 45.7 13 0.00044 33.4 3.2 20 146-165 26-45 (250)
499 1vpl_A ABC transporter, ATP-bi 45.6 9.4 0.00032 34.6 2.3 20 146-165 38-57 (256)
500 2ihy_A ABC transporter, ATP-bi 45.5 10 0.00035 34.8 2.5 20 146-165 44-63 (279)
No 1
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=4.7e-48 Score=392.75 Aligned_cols=335 Identities=27% Similarity=0.402 Sum_probs=303.9
Q ss_pred ccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC
Q psy1548 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG 149 (448)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g 149 (448)
+.+...+.+...|.++++++.+++++.+.| |..|+++ |++ +||.++.|
T Consensus 46 ~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g-----------------------~~~pt~i---Q~~------ai~~i~~g 93 (434)
T 2db3_A 46 VTGSDVPQPIQHFTSADLRDIIIDNVNKSG-----------------------YKIPTPI---QKC------SIPVISSG 93 (434)
T ss_dssp EESSSCCCCCCCGGGSCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTT
T ss_pred ecCCCCCCCcCChhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhcC
Confidence 345556666778999999999999999999 9999999 999 99999999
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccC-----CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTD-----SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~-----~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
+|+++++|||||||++|++|++..+.... .++++||++||++|+.|+++.++++.... ++++..++|+.....+
T Consensus 94 ~d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~-~~~~~~~~gg~~~~~~ 172 (434)
T 2db3_A 94 RDLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFAFES-YLKIGIVYGGTSFRHQ 172 (434)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHTTTS-SCCCCEECTTSCHHHH
T ss_pred CCEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHhccC-CcEEEEEECCCCHHHH
Confidence 99999999999999999999999876532 36799999999999999999999999876 7899999999988777
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC--CCCCeEEEEeccCCccH
Q psy1548 225 EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS--PHTKQVMMFSATLSKEI 302 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l--~~~~q~i~~SAT~~~~~ 302 (448)
...+..+ ++|+|+||++|.+++.+....+.+++++|+||||+|+++ +|...+..++..+ ++..|+++||||+++.+
T Consensus 173 ~~~l~~~-~~Ivv~Tp~~l~~~l~~~~~~l~~~~~lVlDEah~~~~~-gf~~~~~~i~~~~~~~~~~q~l~~SAT~~~~~ 250 (434)
T 2db3_A 173 NECITRG-CHVVIATPGRLLDFVDRTFITFEDTRFVVLDEADRMLDM-GFSEDMRRIMTHVTMRPEHQTLMFSATFPEEI 250 (434)
T ss_dssp HHHHTTC-CSEEEECHHHHHHHHHTTSCCCTTCCEEEEETHHHHTST-TTHHHHHHHHHCTTSCSSCEEEEEESCCCHHH
T ss_pred HHHhhcC-CCEEEEChHHHHHHHHhCCcccccCCeEEEccHhhhhcc-CcHHHHHHHHHhcCCCCCceEEEEeccCCHHH
Confidence 7777665 899999999999999998888999999999999999998 9999999999875 57889999999999999
Q ss_pred HHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 303 RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 303 ~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
..++..++.++..+.+... .....++.+.+..+....|...|.+++..... ++||||++++.|+.+++.|++.|+++.
T Consensus 251 ~~~~~~~l~~~~~i~~~~~-~~~~~~i~~~~~~~~~~~k~~~l~~~l~~~~~-~~lVF~~t~~~a~~l~~~L~~~~~~~~ 328 (434)
T 2db3_A 251 QRMAGEFLKNYVFVAIGIV-GGACSDVKQTIYEVNKYAKRSKLIEILSEQAD-GTIVFVETKRGADFLASFLSEKEFPTT 328 (434)
T ss_dssp HHHHHTTCSSCEEEEESST-TCCCTTEEEEEEECCGGGHHHHHHHHHHHCCT-TEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHHHhccCCEEEEeccc-cccccccceEEEEeCcHHHHHHHHHHHHhCCC-CEEEEEeCcHHHHHHHHHHHhCCCCEE
Confidence 9999999999998887765 44567889999999999999999999988765 499999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChh
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFH----------------------------------------------KGLAITFASDEN 416 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~ 416 (448)
.+||+|++.+|.+++++|++|+ .|.+++|+++.+
T Consensus 329 ~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~~G~a~~~~~~~~ 408 (434)
T 2db3_A 329 SIHGDRLQSQREQALRDFKNGSMKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGNNGRATSFFDPEK 408 (434)
T ss_dssp EESTTSCHHHHHHHHHHHHTSSCSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTCCEEEEEEECTTT
T ss_pred EEeCCCCHHHHHHHHHHHHcCCCcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCCCCEEEEEEeccc
Confidence 9999999999999999999998 799999999777
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccc
Q psy1548 417 DAKILNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 417 d~~~l~~i~~~~~~~~~~~p~~~~~ 441 (448)
+...++.+.+.+....+++|+++..
T Consensus 409 ~~~~~~~l~~~l~~~~~~vp~~l~~ 433 (434)
T 2db3_A 409 DRAIAADLVKILEGSGQTVPDFLRT 433 (434)
T ss_dssp CGGGHHHHHHHHHHTTCCCCGGGC-
T ss_pred cHHHHHHHHHHHHHcCCCCCHHHHh
Confidence 8889999999999999999999753
No 2
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=3.2e-46 Score=373.49 Aligned_cols=338 Identities=80% Similarity=1.221 Sum_probs=310.2
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
+.+|+++++++.+++++.+.| |..|+++ |.+ +++.++.|+++++.+||
T Consensus 7 ~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~a~T 54 (391)
T 1xti_A 7 SSGFRDFLLKPELLRAIVDCG-----------------------FEHPSEV---QHE------CIPQAILGMDVLCQAKS 54 (391)
T ss_dssp --CGGGGCCCHHHHHHHHHHS-----------------------CCSCCHH---HHH------HHHHHTTTCCEEEECSS
T ss_pred CCChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCCcEEEECCC
Confidence 357999999999999999999 9999888 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|+|||++|++|++..+.....+.++||++|+++|+.|+.+.++++....+++++..+.|+.........+..+.++|+|+
T Consensus 55 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~iiv~ 134 (391)
T 1xti_A 55 GMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVG 134 (391)
T ss_dssp CSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTCCEEEECTTSCHHHHHHHHHHSCCSEEEE
T ss_pred CCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCeEEEEEeCCCCHHHHHHHHhcCCCCEEEE
Confidence 99999999999999887666677999999999999999999999998877899999999988777777777666899999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||+++..++......+.+++++|+||||++.++.+++..+..++...++..|++++|||+++....++..++.+|..+..
T Consensus 135 T~~~l~~~~~~~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 214 (391)
T 1xti_A 135 TPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 214 (391)
T ss_dssp CHHHHHHHHHTTSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHHHTSCSSSEEEEEESSCCSTHHHHHHHHCSSCEEEEC
T ss_pred CHHHHHHHHHcCCccccccCEEEEeCHHHHhhccchHHHHHHHHhhCCCCceEEEEEeeCCHHHHHHHHHHcCCCeEEEe
Confidence 99999999998888899999999999999988558889999999999999999999999999999999999999998887
Q ss_pred cCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy1548 319 DDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 319 ~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~ 398 (448)
..........+.+++..+....|...+..++.....+++||||++++.|+.+++.|++.|+.+..+||+|++++|.++++
T Consensus 215 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~ 294 (391)
T 1xti_A 215 DDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQ 294 (391)
T ss_dssp CCCCCCCCTTCEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHH
T ss_pred cCccccCcccceEEEEEcCchhHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 76655667788899999999999999999999988899999999999999999999999999999999999999999999
Q ss_pred HHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCC
Q psy1548 399 EFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSI 432 (448)
Q Consensus 399 ~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~ 432 (448)
.|++|+ .|.+++++++.++..+++.+++.+++.+
T Consensus 295 ~f~~~~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 374 (391)
T 1xti_A 295 QFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNI 374 (391)
T ss_dssp HHHTTCCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSSSCCCCEEEEEECSHHHHHHHHHHHHHTTCCC
T ss_pred HHhcCCCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccCCCCceEEEEEEcccchHHHHHHHHHHhcCCh
Confidence 999988 7899999999888899999999999999
Q ss_pred CCCCccccccccccCC
Q psy1548 433 SELPDEIDLSTYIEGR 448 (448)
Q Consensus 433 ~~~p~~~~~~~~~~~~ 448 (448)
.++|..++...+++.|
T Consensus 375 ~~~~~~~~~~~~~~~~ 390 (391)
T 1xti_A 375 SELPDEIDISSYIEQT 390 (391)
T ss_dssp EECCSCCCGGGTSCC-
T ss_pred hhCCccccHHHHhhhc
Confidence 9999999988888765
No 3
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=5.7e-45 Score=367.09 Aligned_cols=325 Identities=33% Similarity=0.572 Sum_probs=296.2
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|.++++++.+++++...| |..|+++ |++ +++.++.|+|+++++||
T Consensus 36 ~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------ai~~i~~~~~~lv~a~T 83 (410)
T 2j0s_A 36 TPTFDTMGLREDLLRGIYAYG-----------------------FEKPSAI---QQR------AIKQIIKGRDVIAQSQS 83 (410)
T ss_dssp CCSGGGGCCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECCT
T ss_pred CCCHhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCC
Confidence 357999999999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|+|||++|++|+++.+.....+.++||++||++|+.|+.+.++.+.... ++++..+.|+.....+...+..+ ++|+|+
T Consensus 84 GsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~ivv~ 161 (410)
T 2j0s_A 84 GTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHACIGGTNVGEDIRKLDYG-QHVVAG 161 (410)
T ss_dssp TSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECTTSCHHHHHHHHHHC-CSEEEE
T ss_pred CCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccC-CeEEEEEECCCCHHHHHHHhhcC-CCEEEc
Confidence 9999999999999988665567799999999999999999999998877 88999999999877777777665 899999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||+++.+++..+.+.+.+++++|+||||++.++ ++...+..+++.+++..|++++|||+++.+.++...++.+|..+..
T Consensus 162 Tp~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 240 (410)
T 2j0s_A 162 TPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 240 (410)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEEEETHHHHTST-TTHHHHHHHHTTSCTTCEEEEEESCCCHHHHTTGGGTCSSCEEECC
T ss_pred CHHHHHHHHHhCCccHhheeEEEEccHHHHHhh-hhHHHHHHHHHhCccCceEEEEEcCCCHHHHHHHHHHcCCCEEEEe
Confidence 999999999998888899999999999999998 9999999999999999999999999999988888899999988876
Q ss_pred cCcccccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 319 DDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 319 ~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
... .....++.+.+..+.... |...+..++.....+++||||++++.++.+++.|++.|+.+..+||+|++.+|.+++
T Consensus 241 ~~~-~~~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~ 319 (410)
T 2j0s_A 241 KRD-ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIM 319 (410)
T ss_dssp CGG-GCSCTTEEEEEEEESSTTHHHHHHHHHHHHHTSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHH
T ss_pred cCc-cccCCCceEEEEEeCcHHhHHHHHHHHHHhcCCCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHH
Confidence 555 456677888888777654 889999999888788999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
+.|++|+ .|.+++|++.. |...+++++++++..
T Consensus 320 ~~f~~g~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~ 398 (410)
T 2j0s_A 320 KEFRSGASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGVAINFVKND-DIRILRDIEQYYSTQ 398 (410)
T ss_dssp HHHHHTSSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGGGCCEEEEEEEEGG-GHHHHHHHHHHTTCC
T ss_pred HHHHCCCCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCCCCceEEEEEecHH-HHHHHHHHHHHhCCC
Confidence 9999998 78999999876 889999999999999
Q ss_pred CCCCCcccc
Q psy1548 432 ISELPDEID 440 (448)
Q Consensus 432 ~~~~p~~~~ 440 (448)
+.++|.++.
T Consensus 399 ~~~~~~~~~ 407 (410)
T 2j0s_A 399 IDEMPMNVA 407 (410)
T ss_dssp CEECCSCCT
T ss_pred ceecccchh
Confidence 999998754
No 4
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-44 Score=365.65 Aligned_cols=334 Identities=27% Similarity=0.405 Sum_probs=295.0
Q ss_pred CceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcc
Q psy1548 72 GAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMD 151 (448)
Q Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~ 151 (448)
|...+.+...|.++++++.+++++...| |..|+++ |++ ++|.++.|+|
T Consensus 7 ~~~~p~~~~~f~~~~l~~~l~~~l~~~~-----------------------~~~~~~~---Q~~------~i~~i~~~~~ 54 (417)
T 2i4i_A 7 GNNCPPHIESFSDVEMGEIIMGNIELTR-----------------------YTRPTPV---QKH------AIPIIKEKRD 54 (417)
T ss_dssp STTCCCCCSSGGGSCCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHTTCC
T ss_pred CCcCCcccCCHhhCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHccCCC
Confidence 4455666678999999999999999999 9999999 999 9999999999
Q ss_pred eeeeccCCChhHHHHHHHHHHhhhccC------------------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEE
Q psy1548 152 ILCQAKSGMGKTAVFVLATLQQLETTD------------------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVG 213 (448)
Q Consensus 152 vli~apTGsGKT~~~~l~~l~~l~~~~------------------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~ 213 (448)
+++++|||+|||++|++|+++.+.... .++++||++||++|+.|+.+.++.+.... ++++.
T Consensus 55 ~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~ 133 (417)
T 2i4i_A 55 LMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRELAVQIYEEARKFSYRS-RVRPC 133 (417)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEE
T ss_pred EEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHHHHHHHHHHHHHHhCcC-CceEE
Confidence 999999999999999999998875432 23689999999999999999999998876 89999
Q ss_pred EEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh--CCC--CC
Q psy1548 214 VFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS--SPH--TK 289 (448)
Q Consensus 214 ~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~--l~~--~~ 289 (448)
.++|+.....+...+..+ ++|+|+||+++.+++..+.+.+.+++++|+||||++.++ +|...+..++.. ++. ..
T Consensus 134 ~~~g~~~~~~~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~ 211 (417)
T 2i4i_A 134 VVYGGADIGQQIRDLERG-CHLLVATPGRLVDMMERGKIGLDFCKYLVLDEADRMLDM-GFEPQIRRIVEQDTMPPKGVR 211 (417)
T ss_dssp EECSSSCHHHHHHHHTTC-CSEEEECHHHHHHHHHTTSBCCTTCCEEEESSHHHHHHT-TCHHHHHHHHTSSSCCCBTTB
T ss_pred EEECCCCHHHHHHHhhCC-CCEEEEChHHHHHHHHcCCcChhhCcEEEEEChhHhhcc-CcHHHHHHHHHhccCCCcCCc
Confidence 999998877777777664 899999999999999988888999999999999999998 899999999874 333 67
Q ss_pred eEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC-CCCeEEEEECccHHHH
Q psy1548 290 QVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL-EFNQVVIFVKSVTRCI 368 (448)
Q Consensus 290 q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~ 368 (448)
|++++|||+++.+..+...++.++..+..... .....++.+.+..+....|...+.++++.. .++++||||++++.|+
T Consensus 212 ~~i~~SAT~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~lVf~~~~~~~~ 290 (417)
T 2i4i_A 212 HTMMFSATFPKEIQMLARDFLDEYIFLAVGRV-GSTSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGAD 290 (417)
T ss_dssp EEEEEESCCCHHHHHHHHHHCSSCEEEEEC-----CCSSEEEEEEECCGGGHHHHHHHHHHTCCTTCEEEEECSSHHHHH
T ss_pred EEEEEEEeCCHHHHHHHHHHcCCCEEEEeCCC-CCCccCceEEEEEeccHhHHHHHHHHHHhcCCCCeEEEEECCHHHHH
Confidence 99999999999999999999999988777655 445678889999999999999999999886 5678999999999999
Q ss_pred HHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC--------------------------------------------
Q psy1548 369 ALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH-------------------------------------------- 404 (448)
Q Consensus 369 ~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~-------------------------------------------- 404 (448)
.+++.|++.|+.+..+||+|++++|.++++.|++|+
T Consensus 291 ~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 291 SLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp HHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHHTSSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-
T ss_pred HHHHHHHHCCCCeeEecCCCCHHHHHHHHHHHHcCCCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC
Confidence 999999999999999999999999999999999998
Q ss_pred --CceEEEEecChhhHHHHHHHHHHhcCCCCCCCcccccc
Q psy1548 405 --KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLS 442 (448)
Q Consensus 405 --~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~ 442 (448)
.|.+++|++.. |...++.+.+.+.....++|.++..+
T Consensus 371 g~~g~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~l~~~ 409 (417)
T 2i4i_A 371 GNLGLATSFFNER-NINITKDLLDLLVEAKQEVPSWLENM 409 (417)
T ss_dssp -CCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCCHHHHHH
T ss_pred CCCceEEEEEccc-cHHHHHHHHHHHHHhcCcCCHHHHHH
Confidence 68899999876 78888999999998889999886543
No 5
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1e-43 Score=356.60 Aligned_cols=331 Identities=34% Similarity=0.512 Sum_probs=297.2
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
....|+++++++.+++++.+.| |..|+++ |++ +++.++.|+++++.+|
T Consensus 19 ~~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~i~~~~~~li~a~ 66 (400)
T 1s2m_A 19 KGNTFEDFYLKRELLMGIFEAG-----------------------FEKPSPI---QEE------AIPVAITGRDILARAK 66 (400)
T ss_dssp --CCGGGGCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHHTCCEEEECC
T ss_pred ccCChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCCCEEEECC
Confidence 3457999999999999999999 9999988 999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
||+|||++|++|++..+.....+.++||++|+++|+.|+.+.++.+.... ++++..+.|+.....+...+.. .++|+|
T Consensus 67 TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~-~~~Ivv 144 (400)
T 1s2m_A 67 NGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC-GISCMVTTGGTNLRDDILRLNE-TVHILV 144 (400)
T ss_dssp TTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECSSSCHHHHHHHTTS-CCSEEE
T ss_pred CCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHHHhcC-CCCEEE
Confidence 99999999999999988766566789999999999999999999998877 8899999998876665555544 489999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||+++.+++......+.+++++|+||||++.+. ++...+..++..+++..|++++|||++..+...+..++..|..+.
T Consensus 145 ~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~-~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~~~ 223 (400)
T 1s2m_A 145 GTPGRVLDLASRKVADLSDCSLFIMDEADKMLSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEIN 223 (400)
T ss_dssp ECHHHHHHHHHTTCSCCTTCCEEEEESHHHHSSH-HHHHHHHHHHTTSCSSCEEEEEESCCCHHHHHHHHHHCSSCEEES
T ss_pred EchHHHHHHHHhCCcccccCCEEEEeCchHhhhh-chHHHHHHHHHhCCcCceEEEEEecCCHHHHHHHHHHcCCCeEEE
Confidence 9999999999888888899999999999999987 899999999999999999999999999999999999998887765
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
.... ....++.+++..+....|...+..++.....+++||||++++.++.+++.|++.|+.+..+||+|++++|..++
T Consensus 224 ~~~~--~~~~~~~~~~~~~~~~~k~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 301 (400)
T 1s2m_A 224 LMEE--LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVF 301 (400)
T ss_dssp CCSS--CBCTTEEEEEEECCGGGHHHHHHHHHHHSCCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHH
T ss_pred eccc--cccCCceeEEEEechhhHHHHHHHHHhhcCCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHH
Confidence 5433 45677888888899899999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
+.|++|+ .|.++++++.. |...++++++.++.+
T Consensus 302 ~~f~~g~~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~ 380 (400)
T 1s2m_A 302 HEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGLAINLINWN-DRFNLYKIEQELGTE 380 (400)
T ss_dssp HHHHTTSSSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTCC
T ss_pred HHHhcCCCcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcCCCCCceEEEEeccc-hHHHHHHHHHHhCCC
Confidence 9999997 78899999877 788999999999999
Q ss_pred CCCCCcccccccccc
Q psy1548 432 ISELPDEIDLSTYIE 446 (448)
Q Consensus 432 ~~~~p~~~~~~~~~~ 446 (448)
++++|.+++...|.+
T Consensus 381 ~~~~~~~~~~~~~~~ 395 (400)
T 1s2m_A 381 IAAIPATIDKSLYVA 395 (400)
T ss_dssp CEECCSSCCGGGTCC
T ss_pred cccccccccccceeh
Confidence 999999987766543
No 6
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=6e-44 Score=359.66 Aligned_cols=330 Identities=32% Similarity=0.540 Sum_probs=292.3
Q ss_pred eeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeee
Q psy1548 76 SIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155 (448)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ 155 (448)
......|.++++++.+++.+.+.+ |..|+++ |++ +++.++.|++++++
T Consensus 36 ~~~~~~f~~~~l~~~~~~~l~~~~-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~ 83 (414)
T 3eiq_A 36 NEIVDSFDDMNLSESLLRGIYAYG-----------------------FEKPSAI---QQR------AILPCIKGYDVIAQ 83 (414)
T ss_dssp CCCCCCGGGGCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEC
T ss_pred cchhcCHhhCCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HhHHHhCCCCEEEE
Confidence 334467999999999999999999 9999998 999 99999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcE
Q psy1548 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235 (448)
Q Consensus 156 apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~I 235 (448)
+|||+|||++|++|+++.+.....+.++||++|+++|+.|+.+.++.+.... +..+..++|+.....+...+..+.++|
T Consensus 84 a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i 162 (414)
T 3eiq_A 84 AQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM-GASCHACIGGTNVRAEVQKLQMEAPHI 162 (414)
T ss_dssp CCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGS-CCCEEECCCCTTHHHHHHHHTTTCCSE
T ss_pred CCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhccc-CceEEEEECCcchHHHHHHHhcCCCCE
Confidence 9999999999999999988776667799999999999999999999998877 889999999988877777777566899
Q ss_pred EEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 236 lV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
+|+||+++.+++..+.+.+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++.+..+...++.+|..
T Consensus 163 iv~T~~~l~~~l~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 241 (414)
T 3eiq_A 163 IVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIR 241 (414)
T ss_dssp EEECHHHHHHHHHHTSSCSTTCCEEEECSHHHHHHT-TTHHHHHHHHTTSCTTCEEEEECSCCCHHHHHHHTTTCSSCEE
T ss_pred EEECHHHHHHHHHcCCcccccCcEEEEECHHHhhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHcCCCEE
Confidence 999999999999988888899999999999999998 9999999999999999999999999999999999999999988
Q ss_pred EEEcCcccccccceeEEEEEcCcc-hHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 316 VYVDDEAKLTLHGLQQHYVKLKEN-EKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 316 i~~~~~~~~~~~~i~~~~~~~~~~-~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
+..... ......+.+.+..+... .|...+..++.....+++||||++++.|+.+++.|++.|+.+..+||+|++++|.
T Consensus 242 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~ 320 (414)
T 3eiq_A 242 ILVKKE-ELTLEGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERD 320 (414)
T ss_dssp ECCCCC-CCCTTSCCEEEEECSSSTTHHHHHHHHHHSSCCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHH
T ss_pred EEecCC-ccCCCCceEEEEEeChHHhHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHH
Confidence 877655 45667788888777665 4899999999998888999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHh
Q psy1548 395 KKYQEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRF 428 (448)
Q Consensus 395 ~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~ 428 (448)
++++.|++|+ .|.++++++.. +...++.+++.+
T Consensus 321 ~~~~~f~~g~~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~ 399 (414)
T 3eiq_A 321 VIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGVAINMVTEE-DKRTLRDIETFY 399 (414)
T ss_dssp HHHHHHSCC---CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC-------CEEEEECST-HHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccCCCCCceEEEEEcHH-HHHHHHHHHHHH
Confidence 9999999988 68899999877 788999999999
Q ss_pred cCCCCCCCccccc
Q psy1548 429 DVSISELPDEIDL 441 (448)
Q Consensus 429 ~~~~~~~p~~~~~ 441 (448)
+..+.++|.++..
T Consensus 400 ~~~~~~~~~~~~~ 412 (414)
T 3eiq_A 400 NTSIEEMPLNVAD 412 (414)
T ss_dssp TCCCEECCC----
T ss_pred cCCccccChhhhh
Confidence 9999999988653
No 7
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=6.3e-42 Score=344.49 Aligned_cols=325 Identities=27% Similarity=0.432 Sum_probs=287.6
Q ss_pred eccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceee
Q psy1548 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILC 154 (448)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli 154 (448)
.....|+++++++.+++.+.+.| |..|+++ |.+ +++.++.| +++++
T Consensus 22 ~~~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~~~lv 69 (412)
T 3fht_A 22 YSVKSFEELRLKPQLLQGVYAMG-----------------------FNRPSKI---QEN------ALPLMLAEPPQNLIA 69 (412)
T ss_dssp CCSSCTGGGTCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHSSSCCCEEE
T ss_pred cccCCHhhCCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhcCCCCeEEE
Confidence 34567999999999999999999 9999999 999 99999987 99999
Q ss_pred eccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCc
Q psy1548 155 QAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 155 ~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~ 234 (448)
++|||+|||++|++|++..+.....++++||++|+++|+.|+.+.++.+....++..+....++....... ...++
T Consensus 70 ~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 145 (412)
T 3fht_A 70 QSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQ 145 (412)
T ss_dssp ECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTCCCCTTC----CCCCS
T ss_pred ECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhcccceEEEeecCcchhhhh----cCCCC
Confidence 99999999999999999998777777799999999999999999999999887788888888877644332 23479
Q ss_pred EEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCC
Q psy1548 235 IVVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~ 313 (448)
|+|+||+++.+++.+ +.+.+.+++++|+||||++.+..++...+..+...+++..|++++|||+++.+..+...++.++
T Consensus 146 ivv~T~~~l~~~~~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~ 225 (412)
T 3fht_A 146 IVIGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDP 225 (412)
T ss_dssp EEEECHHHHHHHHTTSCSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSSSC
T ss_pred EEEECchHHHHHHHhcCCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhCCCCceEEEEEeecCHHHHHHHHHhcCCC
Confidence 999999999999865 6677899999999999999873388889999999999999999999999999999999999999
Q ss_pred eEEEEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHH
Q psy1548 314 MEVYVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEE 392 (448)
Q Consensus 314 ~~i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~e 392 (448)
..+..... ......+.+.+..+.. ..+...+..++.....+++||||++++.|+.++..|++.|+.+..+||+|++.+
T Consensus 226 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~ 304 (412)
T 3fht_A 226 NVIKLKRE-EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQ 304 (412)
T ss_dssp EEECCCGG-GSSCTTEEEEEEECSSHHHHHHHHHHHHHHHSSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHH
T ss_pred eEEeeccc-cccccCceEEEEEcCChHHHHHHHHHHHhhcCCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHH
Confidence 88877665 4556777787777765 568888999998888889999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCC----------------------------------------------------CceEEEEecChhhHHH
Q psy1548 393 RLKKYQEFKDFH----------------------------------------------------KGLAITFASDENDAKI 420 (448)
Q Consensus 393 R~~~l~~F~~g~----------------------------------------------------~g~~I~~~t~~~d~~~ 420 (448)
|.++++.|++|+ .|.++++++..++...
T Consensus 305 r~~~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~ 384 (412)
T 3fht_A 305 RAAVIERFREGKEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGKRGLAVNMVDSKHSMNI 384 (412)
T ss_dssp HHHHHHHHHTTSCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHH
T ss_pred HHHHHHHHHCCCCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCCCceEEEEEcChhhHHH
Confidence 999999999998 6889999998878999
Q ss_pred HHHHHHHhcCCCCCCCcc
Q psy1548 421 LNNVQDRFDVSISELPDE 438 (448)
Q Consensus 421 l~~i~~~~~~~~~~~p~~ 438 (448)
++.+++.++..+.+++.+
T Consensus 385 ~~~i~~~~~~~~~~~~~~ 402 (412)
T 3fht_A 385 LNRIQEHFNKKIERLDTD 402 (412)
T ss_dssp HHHHHHHHTCCCEEC---
T ss_pred HHHHHHHHCCccccCCCc
Confidence 999999999999998765
No 8
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=7.1e-43 Score=349.34 Aligned_cols=329 Identities=33% Similarity=0.499 Sum_probs=188.3
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|+++++++.+++.+...| |..|+++ |++ +++.++.|+++++++||
T Consensus 20 ~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~i~~~~~~lv~~~T 67 (394)
T 1fuu_A 20 VYKFDDMELDENLLRGVFGYG-----------------------FEEPSAI---QQR------AIMPIIEGHDVLAQAQS 67 (394)
T ss_dssp CCSSGGGCCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHHTCCEEECCCS
T ss_pred cCChhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCC
Confidence 457999999999999999999 9999888 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|+|||++|++|++..+.....++++||++|+++|+.|+.+.+.++.... ++++..+.|+.........+.. ++|+|+
T Consensus 68 GsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~i~v~ 144 (394)
T 1fuu_A 68 GTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQIVVG 144 (394)
T ss_dssp SHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECSSCCHHHHHHHHHH--CSEEEE
T ss_pred CChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccC-CeeEEEEeCCCchHHHHhhcCC--CCEEEE
Confidence 9999999999999988776667799999999999999999999998877 8899999999887666555553 799999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||+++.+.+..+...+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++...++...++.+|..+..
T Consensus 145 T~~~l~~~~~~~~~~~~~~~~vIiDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~ 223 (394)
T 1fuu_A 145 TPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 223 (394)
T ss_dssp CHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCCSCEEEEE
T ss_pred CHHHHHHHHHhCCcchhhCcEEEEEChHHhhCC-CcHHHHHHHHHhCCCCceEEEEEEecCHHHHHHHHHhcCCCeEEEe
Confidence 999999999988888899999999999999998 8999999999999999999999999999999999999999998887
Q ss_pred cCcccccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 319 DDEAKLTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 319 ~~~~~~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
... .....++.+.+..+.... +...+..+++....+++||||++++.|+.+++.|++.|+.+..+||+|++.+|.+++
T Consensus 224 ~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 302 (394)
T 1fuu_A 224 KKD-ELTLEGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIM 302 (394)
T ss_dssp CC------------------------------------------------------------------------------
T ss_pred cCc-cccCCCceEEEEEcCchhhHHHHHHHHHhcCCCCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHH
Confidence 665 445566777766665544 777888888877778999999999999999999999999999999999999999999
Q ss_pred HHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 398 QEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 398 ~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+.|++|+ ..|.++|+....++ ++...--+-..+.|.+...+.++.||
T Consensus 303 ~~f~~~~--~~vlv~T~~~~~Gl--di~~~~~Vi~~~~p~s~~~~~Qr~GR 349 (394)
T 1fuu_A 303 KEFRSGS--SRILISTDLLARGI--DVQQVSLVINYDLPANKENYIHRIGR 349 (394)
T ss_dssp ---------------------------------------------------
T ss_pred HHHHCCC--CcEEEECChhhcCC--CcccCCEEEEeCCCCCHHHHHHHcCc
Confidence 9999987 45667776544443 45444445566778888889999988
No 9
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=7.1e-41 Score=334.56 Aligned_cols=321 Identities=26% Similarity=0.454 Sum_probs=284.1
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceeeec
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILCQA 156 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli~a 156 (448)
...|+++++++.+++++.+.+ |..|+++ |.+ +++.++.| +++++++
T Consensus 4 ~~~f~~~~l~~~l~~~l~~~~-----------------------~~~~~~~---Q~~------~i~~~~~~~~~~~lv~a 51 (395)
T 3pey_A 4 AKSFDELGLAPELLKGIYAMK-----------------------FQKPSKI---QER------ALPLLLHNPPRNMIAQS 51 (395)
T ss_dssp CCSSTTSCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHCSSCCCEEEEC
T ss_pred ccCHhhCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHHcCCCCeEEEEC
Confidence 357999999999999999999 9999999 999 99999998 9999999
Q ss_pred cCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
|||+|||++|++|++..+.....+.++||++|+++|+.|+.+.++.+.... ++.+....++...... ...++|+
T Consensus 52 ~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~ii 125 (395)
T 3pey_A 52 QSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFT-KITSQLIVPDSFEKNK-----QINAQVI 125 (395)
T ss_dssp CTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEESTTSSCTTS-----CBCCSEE
T ss_pred CCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhccc-CeeEEEEecCchhhhc-----cCCCCEE
Confidence 999999999999999988776667799999999999999999999998776 7788887776543322 2247999
Q ss_pred EEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEE
Q psy1548 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316 (448)
Q Consensus 237 V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i 316 (448)
|+||+++.+++......+.+++++|+||||++.+..++...+..+...+++..|++++|||+++.+..+...++.++..+
T Consensus 126 v~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~ 205 (395)
T 3pey_A 126 VGTPGTVLDLMRRKLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPKDTQLVLFSATFADAVRQYAKKIVPNANTL 205 (395)
T ss_dssp EECHHHHHHHHHTTCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCTTCEEEEEESCCCHHHHHHHHHHSCSCEEE
T ss_pred EEcHHHHHHHHHcCCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCCCcEEEEEEecCCHHHHHHHHHhCCCCeEE
Confidence 99999999999988888999999999999999884388999999999999999999999999999999999999988887
Q ss_pred EEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHH
Q psy1548 317 YVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLK 395 (448)
Q Consensus 317 ~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~ 395 (448)
..... ......+.+.+..+.. ..+...+..++.....+++||||++++.|+.+++.|++.|+.+..+||+|++.+|.+
T Consensus 206 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~ 284 (395)
T 3pey_A 206 ELQTN-EVNVDAIKQLYMDCKNEADKFDVLTELYGLMTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDR 284 (395)
T ss_dssp CCCGG-GCSCTTEEEEEEECSSHHHHHHHHHHHHTTTTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHH
T ss_pred Ecccc-ccccccccEEEEEcCchHHHHHHHHHHHHhccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHH
Confidence 76555 4456677777777644 568888888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHhcCC----------------------------------------------------CceEEEEecChhhHHHHHH
Q psy1548 396 KYQEFKDFH----------------------------------------------------KGLAITFASDENDAKILNN 423 (448)
Q Consensus 396 ~l~~F~~g~----------------------------------------------------~g~~I~~~t~~~d~~~l~~ 423 (448)
+++.|++|+ .|.++++++..++...++.
T Consensus 285 ~~~~f~~g~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~~g~~~~~~~~~~~~~~~~~ 364 (395)
T 3pey_A 285 LIDDFREGRSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGRKGVAISFVHDKNSFNILSA 364 (395)
T ss_dssp HHHHHHTTSCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTCCEEEEEEECSHHHHHHHHH
T ss_pred HHHHHHCCCCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCCCceEEEEEechHHHHHHHH
Confidence 999999998 5889999998888899999
Q ss_pred HHHHhc-CCCCCCCcc
Q psy1548 424 VQDRFD-VSISELPDE 438 (448)
Q Consensus 424 i~~~~~-~~~~~~p~~ 438 (448)
+++.++ ..+..+|..
T Consensus 365 i~~~~~~~~~~~~~~~ 380 (395)
T 3pey_A 365 IQKYFGDIEMTRVPTD 380 (395)
T ss_dssp HHHHTTSCCCEECCSS
T ss_pred HHHHhCCceeecCChH
Confidence 999998 888877754
No 10
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.3e-40 Score=326.49 Aligned_cols=314 Identities=31% Similarity=0.472 Sum_probs=280.1
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC-cceeeecc
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG-MDILCQAK 157 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g-~~vli~ap 157 (448)
...|+++++++.+++.+.+.| |..|+++ |++ +++.++.| +++++.+|
T Consensus 5 ~~~f~~~~l~~~~~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~~l~~~~ 52 (367)
T 1hv8_A 5 YMNFNELNLSDNILNAIRNKG-----------------------FEKPTDI---QMK------VIPLFLNDEYNIVAQAR 52 (367)
T ss_dssp CCCGGGSSCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHHTCSEEEEECC
T ss_pred cCchhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCCEEEECC
Confidence 457999999999999999999 9999998 999 99999988 79999999
Q ss_pred CCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 158 SGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
||+|||++|++|++..+... .+.++||++|+++|+.|+.+.+..+.... ++++..+.|+.....+...+.. ++|+|
T Consensus 53 TGsGKT~~~~~~~~~~~~~~-~~~~~lil~P~~~L~~q~~~~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~--~~iiv 128 (367)
T 1hv8_A 53 TGSGKTASFAIPLIELVNEN-NGIEAIILTPTRELAIQVADEIESLKGNK-NLKIAKIYGGKAIYPQIKALKN--ANIVV 128 (367)
T ss_dssp SSSSHHHHHHHHHHHHSCSS-SSCCEEEECSCHHHHHHHHHHHHHHHCSS-CCCEEEECTTSCHHHHHHHHHT--CSEEE
T ss_pred CCChHHHHHHHHHHHHhccc-CCCcEEEEcCCHHHHHHHHHHHHHHhCCC-CceEEEEECCcchHHHHhhcCC--CCEEE
Confidence 99999999999999876543 45689999999999999999999998776 7889999999887766666653 79999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||+++.+.+..+...+.+++++|+||||.+.++ ++...+..++..+++..+++++|||+++........++.++..+.
T Consensus 129 ~T~~~l~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~~~~~~~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~ 207 (367)
T 1hv8_A 129 GTPGRILDHINRGTLNLKNVKYFILDEADEMLNM-GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIK 207 (367)
T ss_dssp ECHHHHHHHHHTTCSCTTSCCEEEEETHHHHHTT-TTHHHHHHHHHTSCSSCEEEEECSSCCHHHHHHHHHHCCSEEEEE
T ss_pred ecHHHHHHHHHcCCcccccCCEEEEeCchHhhhh-chHHHHHHHHHhCCCCceEEEEeeccCHHHHHHHHHHcCCCeEEE
Confidence 9999999999988888899999999999999998 899999999999999999999999999999899998888776655
Q ss_pred EcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHH
Q psy1548 318 VDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 318 ~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l 397 (448)
... ...+.+.+..+...+|...+..++. ...+++||||++++.++.+++.|++.|+.+..+||+|+..+|.+++
T Consensus 208 ~~~-----~~~~~~~~~~~~~~~~~~~l~~~l~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~ 281 (367)
T 1hv8_A 208 AKI-----NANIEQSYVEVNENERFEALCRLLK-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVI 281 (367)
T ss_dssp CCS-----SSSSEEEEEECCGGGHHHHHHHHHC-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHH
T ss_pred ecC-----CCCceEEEEEeChHHHHHHHHHHHh-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHH
Confidence 432 2467788888888999999988887 3456899999999999999999999999999999999999999999
Q ss_pred HHHhcCC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCC
Q psy1548 398 QEFKDFH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVS 431 (448)
Q Consensus 398 ~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~ 431 (448)
+.|++|+ .|.++.+++.. |...+..+++.++.+
T Consensus 282 ~~f~~~~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~ 360 (367)
T 1hv8_A 282 RLFKQKKIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGKAISIINRR-EYKKLRYIERAMKLK 360 (367)
T ss_dssp HHHHTTSSSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCSSSCCEEEEEECTT-SHHHHHHHHHHHTCC
T ss_pred HHHHcCCCeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccCCCccEEEEEEcHH-HHHHHHHHHHHhCCC
Confidence 9999998 68889998876 888999999999998
Q ss_pred CCCCC
Q psy1548 432 ISELP 436 (448)
Q Consensus 432 ~~~~p 436 (448)
+.+++
T Consensus 361 ~~~~~ 365 (367)
T 1hv8_A 361 IKKLK 365 (367)
T ss_dssp CCCBC
T ss_pred Cceec
Confidence 88765
No 11
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=2.3e-42 Score=355.46 Aligned_cols=329 Identities=26% Similarity=0.374 Sum_probs=182.5
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceeeec
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILCQA 156 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli~a 156 (448)
...|.++++++.+++.+...| |..|+++ |.+ ++|.++.| +++++++
T Consensus 91 ~~~f~~~~l~~~l~~~l~~~g-----------------------~~~p~~~---Q~~------ai~~il~~~~~~~l~~a 138 (479)
T 3fmp_B 91 VKSFEELRLKPQLLQGVYAMG-----------------------FNRPSKI---QEN------ALPLMLAEPPQNLIAQS 138 (479)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHTSBSCCEEEEEC
T ss_pred cCCHHHcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHHcCCCCcEEEEc
Confidence 357999999999999999999 9999999 999 99999987 9999999
Q ss_pred cCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
|||||||++|++|++..+.....++++||++|+++|+.|+.+.++.+....+++.+....++....... ...++|+
T Consensus 139 ~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~Iv 214 (479)
T 3fmp_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIV 214 (479)
T ss_dssp CSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTTCCEEEESTTCCCCTTC----CCCCSEE
T ss_pred CCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCCceEEEEeCCccccccc----cCCCCEE
Confidence 999999999999999988777777799999999999999999999998877678888888876543321 2247899
Q ss_pred EEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 237 VGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 237 V~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
|+||+++.+++.+ +.+.+.++++||+||||++.+..++...+..+.+.+++.+|++++|||++..+..++..++.+|..
T Consensus 215 v~Tp~~l~~~l~~~~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~ 294 (479)
T 3fmp_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (479)
T ss_dssp EECHHHHHHHHTTSCCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTSCTTSEEEEEESCCCHHHHHHHHHHSSSEEE
T ss_pred EECchHHHHHHHhcCCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhCCccceEEEEeCCCCHHHHHHHHHHcCCCeE
Confidence 9999999999865 566789999999999999987338888999999999999999999999999999999999999998
Q ss_pred EEEcCcccccccceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHH
Q psy1548 316 VYVDDEAKLTLHGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394 (448)
Q Consensus 316 i~~~~~~~~~~~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~ 394 (448)
+.+... ......+.+.+..+.. ..+...+..++.....+++||||++++.|+.++..|.+.|+.+..+||+|++.+|.
T Consensus 295 i~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~ 373 (479)
T 3fmp_B 295 IKLKRE-EETLDTIKQYYVLCSSRDEKFQALCNLYGAITIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRA 373 (479)
T ss_dssp EEEC----------------------------------------------------------------------------
T ss_pred Eecccc-ccCcCCceEEEEEeCCHHHHHHHHHHHHhhccCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHH
Confidence 887766 4456677777777665 56788888888877788999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCc------cccccccccCC
Q psy1548 395 KKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPD------EIDLSTYIEGR 448 (448)
Q Consensus 395 ~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~------~~~~~~~~~~~ 448 (448)
.+++.|++|+ ..|+++|+.-..++ ++.+.--+-..++|. +...+.++.||
T Consensus 374 ~~~~~f~~g~--~~iLv~T~~~~~Gl--Dip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GR 429 (479)
T 3fmp_B 374 AVIERFREGK--EKVLVTTNVCARGI--DVEQVSVVINFDLPVDKDGNPDNETYLHRIGR 429 (479)
T ss_dssp ------------------------------------------------------------
T ss_pred HHHHHHHcCC--CcEEEEccccccCC--ccccCCEEEEecCCCCCccCCCHHHHHHHhcc
Confidence 9999999988 46777776544443 454444455566774 44578888887
No 12
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.3e-40 Score=350.17 Aligned_cols=326 Identities=21% Similarity=0.329 Sum_probs=262.3
Q ss_pred CCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeee--eCcceeeeccCCChhH
Q psy1548 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV--LGMDILCQAKSGMGKT 163 (448)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~--~g~~vli~apTGsGKT 163 (448)
.+++++++++...| |..|+++ |.+ +++.++ .|+|+++++|||+|||
T Consensus 27 ~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~il~~~~~dvlv~apTGsGKT 74 (579)
T 3sqw_A 27 VLDKEIHKAITRME-----------------------FPGLTPV---QQK------TIKPILSSEDHDVIARAKTGTGKT 74 (579)
T ss_dssp SSCHHHHHHHHTTT-----------------------CSSCCHH---HHH------HHHHHHCSSSEEEEEECCTTSCHH
T ss_pred CCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHHccCCCeEEEEcCCCcHHH
Confidence 39999999999999 9999999 999 999999 7899999999999999
Q ss_pred HHHHHHHHHhhhccC----CCeEEEEeeccHHHHHHHHHHHHHhhcc---CCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 164 AVFVLATLQQLETTD----SNVYVLVMCHTRELAFQISKEYERFSKY---MSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 164 ~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
++|++|+++.+.... .++++|||+||++|+.|+.+.++++... .+...+..++|+.....+...+....++|+
T Consensus 75 l~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~Il 154 (579)
T 3sqw_A 75 FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 154 (579)
T ss_dssp HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHhhcccccceEEEEEECCccHHHHHHHHhcCCCCEE
Confidence 999999999876542 3568999999999999999999998642 235778889999888877777766568999
Q ss_pred EEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-------CCCeEEEEeccCCccHHHHHHH
Q psy1548 237 VGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-------HTKQVMMFSATLSKEIRPVCKK 308 (448)
Q Consensus 237 V~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-------~~~q~i~~SAT~~~~~~~~~~~ 308 (448)
|+||+++.+++... ...+..++++|+||||+++++ +|+..+..++..++ ..+|+++||||+++.+..++..
T Consensus 155 V~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-gf~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~ 233 (579)
T 3sqw_A 155 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN 233 (579)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT
T ss_pred EECHHHHHHHHHhccccccccCCEEEEEChHHhhcC-CCHHHHHHHHHHhhhhhcccccCceEEEEeccCChHHHHHHHH
Confidence 99999999988764 446788999999999999998 99999998877653 3779999999999999999999
Q ss_pred hcCCCeEEEEcCc---ccccccceeEEEEEcCcc-hH----HHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhC--
Q psy1548 309 FMHDPMEVYVDDE---AKLTLHGLQQHYVKLKEN-EK----NKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQ-- 377 (448)
Q Consensus 309 ~l~~~~~i~~~~~---~~~~~~~i~~~~~~~~~~-~k----~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~-- 377 (448)
++.+|..+.+... .......+.+.+...... .+ ...+...+.. ..+.++||||+|+..|+.++..|++.
T Consensus 234 ~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~ 313 (579)
T 3sqw_A 234 IMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 313 (579)
T ss_dssp TCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHT
T ss_pred HcCCCceEEEeecCccccccccccceEEEEecchhhhHHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhc
Confidence 9999887766432 122345566666665542 22 2233333333 45679999999999999999999886
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 378 -NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 378 -g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|+.+..+||+|++.+|.+++++|++|+ ..|+++|+...+++ ++.+.-.+-...+|.+...+.++.||
T Consensus 314 ~~~~v~~~hg~~~~~~R~~~~~~F~~g~--~~vLVaT~~~~~Gi--Dip~v~~VI~~~~p~s~~~y~Qr~GR 381 (579)
T 3sqw_A 314 KDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDVGARGM--DFPNVHEVLQIGVPSELANYIHRIGR 381 (579)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGGGTSSC--CCTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred CCCcEEEecCCCCHHHHHHHHHHhhcCC--CeEEEEcchhhcCC--CcccCCEEEEcCCCCCHHHhhhhccc
Confidence 899999999999999999999999988 56788877543332 22222223445678888888898887
No 13
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=6.2e-40 Score=343.96 Aligned_cols=326 Identities=21% Similarity=0.328 Sum_probs=260.4
Q ss_pred CCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeee--eCcceeeeccCCChhH
Q psy1548 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV--LGMDILCQAKSGMGKT 163 (448)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~--~g~~vli~apTGsGKT 163 (448)
.+++.+++++...| |..|+++ |.+ +++.++ .|+|+++++|||+|||
T Consensus 78 ~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~l~~~~~~~lv~apTGsGKT 125 (563)
T 3i5x_A 78 VLDKEIHKAITRME-----------------------FPGLTPV---QQK------TIKPILSSEDHDVIARAKTGTGKT 125 (563)
T ss_dssp SSCHHHHHHHHTTC-----------------------CSSCCHH---HHH------HHHHHHSSSSEEEEEECCTTSCHH
T ss_pred CCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCCCCeEEEECCCCCCcc
Confidence 39999999999999 9999999 999 999999 6799999999999999
Q ss_pred HHHHHHHHHhhhccC----CCeEEEEeeccHHHHHHHHHHHHHhhcc---CCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 164 AVFVLATLQQLETTD----SNVYVLVMCHTRELAFQISKEYERFSKY---MSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 164 ~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~q~~~~~~~~~~~---~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
++|++|+++.+.... .++++|||+||++|+.|+.+.++.+... .+...+..++|+.....+...+....++|+
T Consensus 126 l~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Ii 205 (563)
T 3i5x_A 126 FAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHDMNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIV 205 (563)
T ss_dssp HHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHHHCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEE
T ss_pred HHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHhhccccCceeEEEEECCcCHHHHHHHHhcCCCCEE
Confidence 999999999886543 2468999999999999999999997543 225678888999887777777755568999
Q ss_pred EEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-------CCCeEEEEeccCCccHHHHHHH
Q psy1548 237 VGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-------HTKQVMMFSATLSKEIRPVCKK 308 (448)
Q Consensus 237 V~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-------~~~q~i~~SAT~~~~~~~~~~~ 308 (448)
|+||+++.+++.+. ...+++++++|+||||+++++ +|+..+..++..++ ..+|+++||||+++.+..++..
T Consensus 206 v~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~l~~~-~f~~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~~~~~ 284 (563)
T 3i5x_A 206 IATPGRLIDVLEKYSNKFFRFVDYKVLDEADRLLEI-GFRDDLETISGILNEKNSKSADNIKTLLFSATLDDKVQKLANN 284 (563)
T ss_dssp EECHHHHHHHHHHHHHHHCTTCCEEEEETHHHHTST-TTHHHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHHHTTT
T ss_pred EECcHHHHHHHHhccccccccceEEEEeCHHHHhcc-chHHHHHHHHHhhhhccccCccCceEEEEEccCCHHHHHHHHH
Confidence 99999999988764 345788999999999999998 99999998877653 3779999999999999999999
Q ss_pred hcCCCeEEEEcCcc---cccccceeEEEEEcCcc-hH----HHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhC--
Q psy1548 309 FMHDPMEVYVDDEA---KLTLHGLQQHYVKLKEN-EK----NKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQ-- 377 (448)
Q Consensus 309 ~l~~~~~i~~~~~~---~~~~~~i~~~~~~~~~~-~k----~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~-- 377 (448)
++.++..+...... ......+.+.+...... .+ ...+...+.. ..++++||||+|++.|+.++..|++.
T Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~ 364 (563)
T 3i5x_A 285 IMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSIFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFK 364 (563)
T ss_dssp TCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHHHHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHT
T ss_pred hcCCCceEEEeccCCCCccccccCceEEEECchhHhhHHHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhcc
Confidence 99988877664321 22344566666655542 22 2223333333 45679999999999999999999886
Q ss_pred -CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 378 -NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 378 -g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|+.+..+||+|++.+|.++++.|++|+ ..|+++|+...+++ ++.+.-.+-..++|.+...+.++.||
T Consensus 365 ~~~~v~~~h~~~~~~~R~~~~~~f~~g~--~~vLvaT~~~~~Gi--Dip~v~~VI~~~~p~s~~~y~Qr~GR 432 (563)
T 3i5x_A 365 KDLPILEFHGKITQNKRTSLVKRFKKDE--SGILVCTDVGARGM--DFPNVHEVLQIGVPSELANYIHRIGR 432 (563)
T ss_dssp TTSCEEEESTTSCHHHHHHHHHHHHHCS--SEEEEECGGGTSSC--CCTTCCEEEEESCCSSTTHHHHHHTT
T ss_pred CCceEEEecCCCCHHHHHHHHHHHhcCC--CCEEEEcchhhcCC--CcccCCEEEEECCCCchhhhhhhcCc
Confidence 899999999999999999999999988 56788877533322 22222223345678888888899888
No 14
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=2.7e-38 Score=309.25 Aligned_cols=300 Identities=25% Similarity=0.421 Sum_probs=252.2
Q ss_pred CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHH
Q psy1548 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
+++++.+++.+.| |..|++. |++ +++.++.|+++++.+|||+|||++|
T Consensus 1 l~~~i~~~l~~~g-----------------------~~~l~~~---Q~~------~i~~i~~~~~~lv~~~TGsGKT~~~ 48 (337)
T 2z0m_A 1 MNEKIEQAIREMG-----------------------FKNFTEV---QSK------TIPLMLQGKNVVVRAKTGSGKTAAY 48 (337)
T ss_dssp CCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECCTTSSHHHHH
T ss_pred CCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhcCCCEEEEcCCCCcHHHHH
Confidence 5788999999999 9999888 999 9999999999999999999999999
Q ss_pred HHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHH
Q psy1548 167 VLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILAL 246 (448)
Q Consensus 167 ~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~ 246 (448)
++|++.. +.++||++|+++|+.|+.+.++++.... +.++..++|+.....+...+.. ++|+|+||+++.++
T Consensus 49 ~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~i~v~T~~~l~~~ 119 (337)
T 2z0m_A 49 AIPILEL------GMKSLVVTPTRELTRQVASHIRDIGRYM-DTKVAEVYGGMPYKAQINRVRN--ADIVVATPGRLLDL 119 (337)
T ss_dssp HHHHHHH------TCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECTTSCHHHHHHHHTT--CSEEEECHHHHHHH
T ss_pred HHHHHhh------cCCEEEEeCCHHHHHHHHHHHHHHhhhc-CCcEEEEECCcchHHHHhhcCC--CCEEEECHHHHHHH
Confidence 9999874 4589999999999999999999998777 8899999999877666555543 79999999999999
Q ss_pred HHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccc
Q psy1548 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326 (448)
Q Consensus 247 l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~ 326 (448)
+......+.+++++|+||||++.++ ++...+..++...+...+++++|||+++.....+..++.++..+... ...
T Consensus 120 ~~~~~~~~~~~~~iViDEah~~~~~-~~~~~~~~~~~~~~~~~~~~~~SAT~~~~~~~~~~~~~~~~~~~~~~----~~~ 194 (337)
T 2z0m_A 120 WSKGVIDLSSFEIVIIDEADLMFEM-GFIDDIKIILAQTSNRKITGLFSATIPEEIRKVVKDFITNYEEIEAC----IGL 194 (337)
T ss_dssp HHTTSCCGGGCSEEEEESHHHHHHT-TCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHSCSCEEEECS----GGG
T ss_pred HHcCCcchhhCcEEEEEChHHhhcc-ccHHHHHHHHhhCCcccEEEEEeCcCCHHHHHHHHHhcCCceeeecc----ccc
Confidence 9888888899999999999999998 99999999999999999999999999999999999999888776432 335
Q ss_pred cceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCc
Q psy1548 327 HGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKG 406 (448)
Q Consensus 327 ~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g 406 (448)
.++.+.+..+....+. ....+....++++||||++++.++.+++.|+ ++..+||+|+..+|.+++++|++|+
T Consensus 195 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~lvf~~~~~~~~~l~~~l~----~~~~~~~~~~~~~r~~~~~~f~~~~-- 266 (337)
T 2z0m_A 195 ANVEHKFVHVKDDWRS--KVQALRENKDKGVIVFVRTRNRVAKLVRLFD----NAIELRGDLPQSVRNRNIDAFREGE-- 266 (337)
T ss_dssp GGEEEEEEECSSSSHH--HHHHHHTCCCSSEEEECSCHHHHHHHHTTCT----TEEEECTTSCHHHHHHHHHHHHTTS--
T ss_pred CCceEEEEEeChHHHH--HHHHHHhCCCCcEEEEEcCHHHHHHHHHHhh----hhhhhcCCCCHHHHHHHHHHHHcCC--
Confidence 5677777777665443 2355666677899999999999999999887 5889999999999999999999988
Q ss_pred eEEEEecChhhHHHHHHHHHHhcCC------CCCCCccccccccccCC
Q psy1548 407 LAITFASDENDAKILNNVQDRFDVS------ISELPDEIDLSTYIEGR 448 (448)
Q Consensus 407 ~~I~~~t~~~d~~~l~~i~~~~~~~------~~~~p~~~~~~~~~~~~ 448 (448)
..|.++|+. ++.-++++ ..+.|.+...+.++.||
T Consensus 267 ~~vlv~T~~--------~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR 306 (337)
T 2z0m_A 267 YDMLITTDV--------ASRGLDIPLVEKVINFDAPQDLRTYIHRIGR 306 (337)
T ss_dssp CSEEEECHH--------HHTTCCCCCBSEEEESSCCSSHHHHHHHHTT
T ss_pred CcEEEEcCc--------cccCCCccCCCEEEEecCCCCHHHhhHhcCc
Confidence 456666653 22233322 34557777777888887
No 15
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.3e-38 Score=329.59 Aligned_cols=318 Identities=23% Similarity=0.386 Sum_probs=242.3
Q ss_pred cccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceeeeccCC
Q psy1548 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILCQAKSG 159 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli~apTG 159 (448)
|...++++.+++.+.+.+ |..|+++ |++ +++.++.| +++++++|||
T Consensus 121 ~~~~~l~~~~~~~l~~~g-----------------------~~~p~~~---Q~~------ai~~i~~~~~~~~ll~apTG 168 (508)
T 3fho_A 121 XXXXXXXXXXXXXXXXXX-----------------------XXXXXKI---QEK------ALPLLLSNPPRNMIGQSQSG 168 (508)
T ss_dssp -----------------------------------------CEECCCT---TSS------SHHHHHCSSCCCEEEECCSS
T ss_pred cccccccccccccccccc-----------------------ccCcHHH---HHH------HHHHHHcCCCCCEEEECCCC
Confidence 455667788888888888 8889988 999 99999998 9999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
+|||++|++|++..+.....+.++||++|+++|+.|+.+.++.+.... ++.+....++...... ...++|+|+|
T Consensus 169 sGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-----~~~~~Ivv~T 242 (508)
T 3fho_A 169 TGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYT-EVKTAFGIKDSVPKGA-----KIDAQIVIGT 242 (508)
T ss_dssp TTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTS-SCCEEC---------------CCCCSEEEEC
T ss_pred ccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCcc-CeeEEEEeCCcccccc-----cCCCCEEEEC
Confidence 999999999999998777667799999999999999999999998766 6666665555432211 2248999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++.+.+..+...+.++++||+||||++.+..++...+..+...+++..|++++|||+++.+..+...+..++..+...
T Consensus 243 ~~~l~~~l~~~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~~~~i~~~ 322 (508)
T 3fho_A 243 PGTVMDLMKRRQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRNTQIVLFSATFSERVEKYAERFAPNANEIRLK 322 (508)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTTCEEEEEESCCSTHHHHHHHHHSTTCEEECCC
T ss_pred HHHHHHHHHcCCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcCCeEEEEeCCCCHHHHHHHHHhcCCCeEEEec
Confidence 99999999988888999999999999999883388999999999999999999999999999999999999999887765
Q ss_pred CcccccccceeEEEEEcC-cchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Q psy1548 320 DEAKLTLHGLQQHYVKLK-ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQ 398 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~~~~-~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~ 398 (448)
.. ......+.+.+..+. ...+...+..++.....+++||||+++++|+.++..|.+.|+.+..+||+|++.+|..+++
T Consensus 323 ~~-~~~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~ 401 (508)
T 3fho_A 323 TE-ELSVEGIKQLYMDCQSEEHKYNVLVELYGLLTIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMD 401 (508)
T ss_dssp CC-C----CCCCEEEEC--CHHHHHHHHHHHC---CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTH
T ss_pred cc-cCCcccceEEEEECCchHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHH
Confidence 55 444556666666664 4567888888888888889999999999999999999999999999999999999999999
Q ss_pred HHhcCC----------------------------------------------------CceEEEEecChhhHHHHHHHHH
Q psy1548 399 EFKDFH----------------------------------------------------KGLAITFASDENDAKILNNVQD 426 (448)
Q Consensus 399 ~F~~g~----------------------------------------------------~g~~I~~~t~~~d~~~l~~i~~ 426 (448)
.|++|+ .|.+++|+++.++...++.+++
T Consensus 402 ~f~~g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~~g~~i~l~~~~~~~~~~~~i~~ 481 (508)
T 3fho_A 402 SFRVGTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGRVGVSINFVHDKKSWEEMNAIQE 481 (508)
T ss_dssp HHHSSSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-----CEEEEEECTTTSSSSHHHHHH
T ss_pred HHHCCCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCCCcEEEEEEeChHHHHHHHHHHH
Confidence 999988 6889999998778889999999
Q ss_pred HhcCCCCCCCcc
Q psy1548 427 RFDVSISELPDE 438 (448)
Q Consensus 427 ~~~~~~~~~p~~ 438 (448)
.++..+.++|.+
T Consensus 482 ~~~~~i~~l~~~ 493 (508)
T 3fho_A 482 YFQRPITRVPTD 493 (508)
T ss_dssp HSCCCCC-----
T ss_pred HHCCCcccCCCc
Confidence 999999999865
No 16
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=2.1e-37 Score=324.30 Aligned_cols=316 Identities=13% Similarity=0.128 Sum_probs=242.4
Q ss_pred cccCCCCHHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 82 FRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
+.++++++.+.+.+.+ .| |..|+++ |.+ +++.++.|+|+++.+|||+
T Consensus 23 ~~~~~l~~~l~~~L~~~fg-----------------------~~~~rp~---Q~~------~i~~il~g~d~lv~~pTGs 70 (591)
T 2v1x_A 23 KEDFPWSGKVKDILQNVFK-----------------------LEKFRPL---QLE------TINVTMAGKEVFLVMPTGG 70 (591)
T ss_dssp CSCSTTHHHHHHHHHHTSC-----------------------CCSCCTT---HHH------HHHHHHTTCCEEEECCTTS
T ss_pred cccCCCCHHHHHHHHHHhC-----------------------CCCCCHH---HHH------HHHHHHcCCCEEEEECCCC
Confidence 4568899999999988 57 9999998 999 9999999999999999999
Q ss_pred hhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH-----hcCCCcE
Q psy1548 161 GKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL-----KTHNPQI 235 (448)
Q Consensus 161 GKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l-----~~~~~~I 235 (448)
|||++|++|++.. ..++|||+|+++|+.|+.+.+..+ ++++..+.|+.........+ ..+.++|
T Consensus 71 GKTl~~~lpal~~------~g~~lVisP~~~L~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~l~~~~~~~~I 139 (591)
T 2v1x_A 71 GKSLCYQLPALCS------DGFTLVICPLISLMEDQLMVLKQL-----GISATMLNASSSKEHVKWVHAEMVNKNSELKL 139 (591)
T ss_dssp CTTHHHHHHHHTS------SSEEEEECSCHHHHHHHHHHHHHH-----TCCEEECCSSCCHHHHHHHHHHHHCTTCCCCE
T ss_pred hHHHHHHHHHHHc------CCcEEEEeCHHHHHHHHHHHHHhc-----CCcEEEEeCCCCHHHHHHHHHHhhcccCCCCE
Confidence 9999999999863 348999999999999999999886 67788888887655443322 2446899
Q ss_pred EEEcHHHHH------HHHHCCCCcCCCeeEEEecchhHHHhhhh--hHHHHHH--HHHhCCCCCeEEEEeccCCccHHHH
Q psy1548 236 VVGTPGRIL------ALVRNKKLNLSLLKHFILDECDKMLEQLE--MRRDVQE--IFRSSPHTKQVMMFSATLSKEIRPV 305 (448)
Q Consensus 236 lV~Tp~~l~------~~l~~~~~~~~~i~~lViDEah~l~~~~~--~~~~~~~--i~~~l~~~~q~i~~SAT~~~~~~~~ 305 (448)
+|+||++|. +.+. ....+.++++|||||||++.+| + |++.+.. .+....+..|++++|||+++.+...
T Consensus 140 lv~Tpe~L~~~~~~~~~l~-~~~~~~~i~~iViDEAH~is~~-g~dfr~~~~~l~~l~~~~~~~~ii~lSAT~~~~v~~~ 217 (591)
T 2v1x_A 140 IYVTPEKIAKSKMFMSRLE-KAYEARRFTRIAVDEVHCCSQW-GHDFRPDYKALGILKRQFPNASLIGLTATATNHVLTD 217 (591)
T ss_dssp EEECHHHHHSCHHHHHHHH-HHHHTTCEEEEEEETGGGGSTT-CTTCCGGGGGGGHHHHHCTTSEEEEEESSCCHHHHHH
T ss_pred EEEChhHhhccHHHHHHHH-hhhhccCCcEEEEECccccccc-ccccHHHHHHHHHHHHhCCCCcEEEEecCCCHHHHHH
Confidence 999999874 2222 2345678999999999999987 5 7777665 3444445789999999999998888
Q ss_pred HHHhcCCCeEEEEcCcccccccceeEEEEEcCc--chHHHHHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCCCcEE
Q psy1548 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE--NEKNKKLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382 (448)
Q Consensus 306 ~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~--~~k~~~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~ 382 (448)
+..++..+....+... ....++...+..... ..+...+..++.. ..++++||||+|++.|+.++..|++.|+.+.
T Consensus 218 i~~~l~~~~~~~~~~~--~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~ 295 (591)
T 2v1x_A 218 AQKILCIEKCFTFTAS--FNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAG 295 (591)
T ss_dssp HHHHTTCCSCEEEECC--CCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEE
T ss_pred HHHHhCCCCcEEEecC--CCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEE
Confidence 8877765433333222 233455444443332 3456677777764 3677999999999999999999999999999
Q ss_pred EEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 383 ~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.+||+|++++|.++++.|++|+ +.|+++|....+++ ++.+.--+-...+|.+++.+.++.||
T Consensus 296 ~~h~~l~~~~R~~~~~~F~~g~--~~VlVAT~a~~~GI--D~p~V~~VI~~~~p~s~~~y~Qr~GR 357 (591)
T 2v1x_A 296 AYHANLEPEDKTTVHRKWSANE--IQVVVATVAFGMGI--DKPDVRFVIHHSMSKSMENYYQESGR 357 (591)
T ss_dssp EECTTSCHHHHHHHHHHHHTTS--SSEEEECTTSCTTC--CCSCEEEEEESSCCSSHHHHHHHHTT
T ss_pred EecCCCCHHHHHHHHHHHHcCC--CeEEEEechhhcCC--CcccccEEEEeCCCCCHHHHHHHhcc
Confidence 9999999999999999999988 46777776533322 12122223445678888888888887
No 17
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=100.00 E-value=2.9e-36 Score=282.16 Aligned_cols=218 Identities=24% Similarity=0.403 Sum_probs=198.7
Q ss_pred hccCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeee
Q psy1548 69 EVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL 148 (448)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~ 148 (448)
.+.+...+.....|.++++++.+++++.+.| |..|+++ |.+ +++.++.
T Consensus 18 ~~~~~~~p~~~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~ 65 (242)
T 3fe2_A 18 TVRGHNCPKPVLNFYEANFPANVMDVIARQN-----------------------FTEPTAI---QAQ------GWPVALS 65 (242)
T ss_dssp EEESSCCCCCCSSTTTTTCCHHHHHHHHTTT-----------------------CCSCCHH---HHH------HHHHHHH
T ss_pred EEeCCCCCCccCCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhC
Confidence 3445566667788999999999999999999 9999999 999 9999999
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhcc-----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETT-----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQK 223 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~-----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~ 223 (448)
|+|+++++|||+|||++|++|++..+... ..++++||++||++|+.|+.+.++.+.... ++++..++|+.....
T Consensus 66 g~~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~-~~~~~~~~g~~~~~~ 144 (242)
T 3fe2_A 66 GLDMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYCRAC-RLKSTCIYGGAPKGP 144 (242)
T ss_dssp TCCEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHHHHT-TCCEEEECTTSCHHH
T ss_pred CCCEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHHhhc-CceEEEEECCCChHH
Confidence 99999999999999999999999987643 346789999999999999999999998887 899999999998887
Q ss_pred hHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHH
Q psy1548 224 DEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 224 ~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~ 303 (448)
+...+..+ ++|+|+||+++.+++..+...+.+++++|+||||++.++ +|...+..+++.++++.|+++||||+++.+.
T Consensus 145 ~~~~~~~~-~~I~v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~l~~~-~~~~~~~~i~~~~~~~~q~~~~SAT~~~~~~ 222 (242)
T 3fe2_A 145 QIRDLERG-VEICIATPGRLIDFLECGKTNLRRTTYLVLDEADRMLDM-GFEPQIRKIVDQIRPDRQTLMWSATWPKEVR 222 (242)
T ss_dssp HHHHHHHC-CSEEEECHHHHHHHHHHTSCCCTTCCEEEETTHHHHHHT-TCHHHHHHHHTTSCSSCEEEEEESCCCHHHH
T ss_pred HHHHhcCC-CCEEEECHHHHHHHHHcCCCCcccccEEEEeCHHHHhhh-CcHHHHHHHHHhCCccceEEEEEeecCHHHH
Confidence 77777775 899999999999999888888999999999999999998 9999999999999999999999999999999
Q ss_pred HHHHHhcCCCeEEEEcCc
Q psy1548 304 PVCKKFMHDPMEVYVDDE 321 (448)
Q Consensus 304 ~~~~~~l~~~~~i~~~~~ 321 (448)
++++.++.+|..+.+...
T Consensus 223 ~~~~~~l~~~~~i~~~~~ 240 (242)
T 3fe2_A 223 QLAEDFLKDYIHINIGAL 240 (242)
T ss_dssp HHHHHHCSSCEEEEECC-
T ss_pred HHHHHHCCCCEEEEecCC
Confidence 999999999999987654
No 18
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=5.4e-37 Score=317.83 Aligned_cols=315 Identities=14% Similarity=0.132 Sum_probs=241.8
Q ss_pred CCcccCCCCHHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 80 SGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
.+|+++++++.+.+.+.+ .| |..|++. |.+ +++.++.|+|+++.+||
T Consensus 2 ~~fe~l~L~~~~~~~l~~~~g-----------------------~~~~r~~---Q~~------~i~~il~g~d~lv~apT 49 (523)
T 1oyw_A 2 AQAEVLNLESGAKQVLQETFG-----------------------YQQFRPG---QEE------IIDTVLSGRDCLVVMPT 49 (523)
T ss_dssp CCCCCSSHHHHHHHHHHHTTC-----------------------CSSCCTT---HHH------HHHHHHTTCCEEEECSC
T ss_pred CChhhCCCCHHHHHHHHHHhC-----------------------CCCCCHH---HHH------HHHHHHcCCCEEEECCC
Confidence 478999999999999998 67 8888888 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH---HHHhcCCCcE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE---EYLKTHNPQI 235 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~---~~l~~~~~~I 235 (448)
|+|||++|++|++.. ...+||++|+++|+.|+.+.++.+ ++.+..+.++....... ..+..+.++|
T Consensus 50 GsGKTl~~~lp~l~~------~g~~lvi~P~~aL~~q~~~~l~~~-----gi~~~~l~~~~~~~~~~~~~~~~~~~~~~i 118 (523)
T 1oyw_A 50 GGGKSLCYQIPALLL------NGLTVVVSPLISLMKDQVDQLQAN-----GVAAACLNSTQTREQQLEVMTGCRTGQIRL 118 (523)
T ss_dssp HHHHHHHHHHHHHHS------SSEEEEECSCHHHHHHHHHHHHHT-----TCCEEEECTTSCHHHHHHHHHHHHHTCCSE
T ss_pred CcHHHHHHHHHHHHh------CCCEEEECChHHHHHHHHHHHHHc-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCCE
Confidence 999999999999853 247999999999999999888875 67788888877654432 3344556899
Q ss_pred EEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh-hhhHHHHHHH---HHhCCCCCeEEEEeccCCccHHHHHHHhc-
Q psy1548 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ-LEMRRDVQEI---FRSSPHTKQVMMFSATLSKEIRPVCKKFM- 310 (448)
Q Consensus 236 lV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~-~~~~~~~~~i---~~~l~~~~q~i~~SAT~~~~~~~~~~~~l- 310 (448)
+|+||+++........+...+++++|+||||++.+| .+|+..+..+ ...+ ++.+++++|||+++.....+...+
T Consensus 119 lv~Tpe~l~~~~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l~~~~-~~~~~i~lSAT~~~~~~~~i~~~l~ 197 (523)
T 1oyw_A 119 LYIAPERLMLDNFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQLRQRF-PTLPFMALTATADDTTRQDIVRLLG 197 (523)
T ss_dssp EEECHHHHTSTTHHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGHHHHC-TTSCEEEEESCCCHHHHHHHHHHHT
T ss_pred EEECHHHHhChHHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHHHHhC-CCCCEEEEeCCCCHHHHHHHHHHhC
Confidence 999999985322112233478999999999999887 2376666544 4444 468899999999988665444333
Q ss_pred -CCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 311 -HDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 311 -~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
.+|..+. ... ...++... ......+...+..++....++++||||+|++.|+.+++.|++.|+.+..+||+|+
T Consensus 198 ~~~~~~~~-~~~---~r~~l~~~--v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~ 271 (523)
T 1oyw_A 198 LNDPLIQI-SSF---DRPNIRYM--LMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLE 271 (523)
T ss_dssp CCSCEEEE-CCC---CCTTEEEE--EEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSC
T ss_pred CCCCeEEe-CCC---CCCceEEE--EEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCC
Confidence 3454433 222 23444333 3334567788888888887889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 390 QEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 390 ~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++|.++++.|++|+ ..|.++|+...+++ ++.+.--+-..++|.++..+.++.||
T Consensus 272 ~~~R~~~~~~f~~g~--~~vlVaT~a~~~Gi--D~p~v~~VI~~~~p~s~~~y~Qr~GR 326 (523)
T 1oyw_A 272 NNVRADVQEKFQRDD--LQIVVATVAFGMGI--NKPNVRFVVHFDIPRNIESYYQETGR 326 (523)
T ss_dssp HHHHHHHHHHHHTTS--CSEEEECTTSCTTT--CCTTCCEEEESSCCSSHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCC--CeEEEEechhhCCC--CccCccEEEEECCCCCHHHHHHHhcc
Confidence 999999999999988 56777877544332 22222223445678888888888887
No 19
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=1.7e-35 Score=272.59 Aligned_cols=215 Identities=79% Similarity=1.228 Sum_probs=189.4
Q ss_pred cCceeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCc
Q psy1548 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGM 150 (448)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~ 150 (448)
.+.+.+.+..+|+++++++.+++++.+.+ |..|+++ |.+ +++.++.|+
T Consensus 5 ~~~~~~~~~~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~ 52 (220)
T 1t6n_A 5 KGSYVSIHSSGFRDFLLKPELLRAIVDCG-----------------------FEHPSEV---QHE------CIPQAILGM 52 (220)
T ss_dssp ---------CCSTTSCCCHHHHHHHHHTT-----------------------CCCCCHH---HHH------HHHHHHTTC
T ss_pred CCCcccccCCCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCC
Confidence 45677777889999999999999999999 9999888 999 999999999
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
|+++++|||+|||++|++|++..+....++.++||++|+++|+.|+.+.++++....+++++..++|+.....+...+..
T Consensus 53 ~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~ 132 (220)
T 1t6n_A 53 DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKK 132 (220)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHHHH
T ss_pred CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHHhc
Confidence 99999999999999999999998876666679999999999999999999999887768899999999887777777776
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
+.++|+|+||+++.+++......+.+++++|+||||++.++.++...+..+++.+++..|++++|||+++.+.++++.++
T Consensus 133 ~~~~i~v~T~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~ 212 (220)
T 1t6n_A 133 NCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFM 212 (220)
T ss_dssp SCCSEEEECHHHHHHHHHTTSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHHHTSCSSSEEEEEESCCCTTTHHHHHTTC
T ss_pred CCCCEEEeCHHHHHHHHHhCCCCcccCCEEEEcCHHHHhcccCcHHHHHHHHHhCCCcCeEEEEEeecCHHHHHHHHHHc
Confidence 66899999999999999988888999999999999999874388999999999999999999999999999999999999
Q ss_pred CCCeEEE
Q psy1548 311 HDPMEVY 317 (448)
Q Consensus 311 ~~~~~i~ 317 (448)
.+|..+.
T Consensus 213 ~~p~~i~ 219 (220)
T 1t6n_A 213 QDPMEIF 219 (220)
T ss_dssp SSCEEEE
T ss_pred CCCeEEe
Confidence 9998764
No 20
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.6e-36 Score=306.11 Aligned_cols=289 Identities=16% Similarity=0.212 Sum_probs=220.1
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|+++ |++ +++.++.|+|+++++|||+|||++|++|++... ..++++||++||++|+.|+.+.++.+.
T Consensus 21 ~~~~~---Q~~------~i~~i~~~~~~lv~apTGsGKT~~~l~~~~~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~ 88 (414)
T 3oiy_A 21 DLTGY---QRL------WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQKLA 88 (414)
T ss_dssp CCCHH---HHH------HHHHHTTTCCEECCSCSSSSHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHHHC
T ss_pred CCCHH---HHH------HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHh---cCCCEEEEEECCHHHHHHHHHHHHHHc
Confidence 57777 999 999999999999999999999999999988866 345689999999999999999999988
Q ss_pred ccCCCceEEEEEcCccc---HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh----------
Q psy1548 205 KYMSNIKVGVFFGGLPI---QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ---------- 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~---~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~---------- 271 (448)
. . ++++..++|+.+. ..+...+..+.++|+|+||+++.+++.. +.+.+++++|+||||++..+
T Consensus 89 ~-~-~~~v~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~l~~--~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 89 D-E-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp C-S-SCCEEECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHCHHH--HTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred c-C-CceEEEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHHHHH--hccccccEEEEeChHhhhhccchhhhHHhh
Confidence 7 4 8999999999987 4555666666689999999999887764 56678999999999977642
Q ss_pred hhhHHH-HHHHHHhCC-----------CCCeEEEEecc-CCccHH-HHHHHhcCCCeEEEEcCcccccccceeEEEEEcC
Q psy1548 272 LEMRRD-VQEIFRSSP-----------HTKQVMMFSAT-LSKEIR-PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK 337 (448)
Q Consensus 272 ~~~~~~-~~~i~~~l~-----------~~~q~i~~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~ 337 (448)
.+|... +..++..++ +..|++++||| .|..+. .+...++. +.+... .....++.+.+..+
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~i~~~~~~~- 238 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRISS- 238 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHS----CCSSCC-CCCCCSEEEEEESS-
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhc----cCcCcc-ccccccchheeecc-
Confidence 166666 777887776 78899999999 565544 33344333 111112 23456677777655
Q ss_pred cchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHhcCCCceEEEEe----
Q psy1548 338 ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV-SIHRGMTQEERLKKYQEFKDFHKGLAITFA---- 412 (448)
Q Consensus 338 ~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~-~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~---- 412 (448)
++...+..+++.. ++++||||++++.|+.++..|++.|+.+. .+||+ +|. ++.|++|+ ..|+++
T Consensus 239 --~~~~~l~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~----~r~--~~~f~~g~--~~vLvat~s~ 307 (414)
T 3oiy_A 239 --RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF----EKN--FEDFKVGK--INILIGVQAY 307 (414)
T ss_dssp --CCHHHHHHHHHHH-CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH----HHH--HHHHHTTS--CSEEEEECCT
T ss_pred --CHHHHHHHHHHHc-CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc----chH--HHHHhCCC--CeEEEEecCc
Confidence 3455667777663 47999999999999999999999999998 99995 444 99999998 456677
Q ss_pred cChhhHHHHHHHHH-HhcCCCCCCC--ccccccccccCC
Q psy1548 413 SDENDAKILNNVQD-RFDVSISELP--DEIDLSTYIEGR 448 (448)
Q Consensus 413 t~~~d~~~l~~i~~-~~~~~~~~~p--~~~~~~~~~~~~ 448 (448)
|+...+++ ++.+ .-.+-..++| .+...+.++.||
T Consensus 308 T~~~~~Gi--Dip~~v~~VI~~~~p~~~~~~~y~qr~GR 344 (414)
T 3oiy_A 308 YGKLTRGV--DLPERIKYVIFWGTPSGPDVYTYIQASGR 344 (414)
T ss_dssp TCCCCCCC--CCTTTCCEEEEESCCTTTCHHHHHHHHGG
T ss_pred CchhhccC--ccccccCEEEEECCCCCCCHHHHHHHhCc
Confidence 54322221 2222 1123335677 677788888887
No 21
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.8e-35 Score=283.93 Aligned_cols=206 Identities=28% Similarity=0.450 Sum_probs=186.6
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeC--cceeeec
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLG--MDILCQA 156 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g--~~vli~a 156 (448)
...|.++++++.+++++...| |..|+++ |.+ ++|.++.| +|+++++
T Consensus 91 ~~~f~~l~l~~~l~~~l~~~g-----------------------~~~pt~i---Q~~------ai~~il~~~~~~~l~~a 138 (300)
T 3fmo_B 91 VKSFEELRLKPQLLQGVYAMG-----------------------FNRPSKI---QEN------ALPLMLAEPPQNLIAQS 138 (300)
T ss_dssp CCCSGGGTCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHTSSSCCCEEEEC
T ss_pred cCCHhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHHcCCCCeEEEEC
Confidence 467999999999999999999 9999999 999 99999998 9999999
Q ss_pred cCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
|||||||++|++|+++.+.....++++||++||++||.|+++.++.+....+++.+....|+....... ...++|+
T Consensus 139 ~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~Il 214 (300)
T 3fmo_B 139 QSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPELKLAYAVRGNKLERGQ----KISEQIV 214 (300)
T ss_dssp CTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEESTTCCCCTTC----CCCCSEE
T ss_pred CCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCCcEEEEEeCCccHhhhh----cCCCCEE
Confidence 999999999999999998877777899999999999999999999999877688999998887654332 2348999
Q ss_pred EEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 237 VGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 237 V~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
|+||++|.+++.+ +.+.++++++|||||||+|++..+|...+..+++.+++.+|+++||||+++.+..+++.++.+|..
T Consensus 215 V~TP~~l~~~l~~~~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~~~~~q~i~~SAT~~~~v~~~a~~~l~~p~~ 294 (300)
T 3fmo_B 215 IGTPGTVLDWCSKLKFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRMLPRNCQMLLFSATFEDSVWKFAQKVVPDPNV 294 (300)
T ss_dssp EECHHHHHHHHTTTCCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTSCTTCEEEEEESCCCHHHHHHHHHHSSSCEE
T ss_pred EECHHHHHHHHHhcCCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhCCCCCEEEEEeccCCHHHHHHHHHHCCCCeE
Confidence 9999999999966 667889999999999999998328999999999999999999999999999999999999999999
Q ss_pred EEEcC
Q psy1548 316 VYVDD 320 (448)
Q Consensus 316 i~~~~ 320 (448)
|.+..
T Consensus 295 i~~~~ 299 (300)
T 3fmo_B 295 IKLKR 299 (300)
T ss_dssp EEECC
T ss_pred EEecC
Confidence 87653
No 22
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=100.00 E-value=3.5e-35 Score=273.95 Aligned_cols=209 Identities=35% Similarity=0.569 Sum_probs=180.5
Q ss_pred eccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeec
Q psy1548 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156 (448)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~a 156 (448)
.....|+++++++.+++++.+.| |..|+++ |++ +++.++.|+|+++++
T Consensus 27 ~~~~~f~~l~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------ai~~i~~~~~~li~a 74 (237)
T 3bor_A 27 EIVDNFDDMNLKESLLRGIYAYG-----------------------FEKPSAI---QQR------AIIPCIKGYDVIAQA 74 (237)
T ss_dssp CCCCSGGGSCCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEECC
T ss_pred CccCChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEEC
Confidence 34567999999999999999999 9999988 999 999999999999999
Q ss_pred cCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 157 KSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
|||+|||++|++|+++.+.....+.++||++||++|+.|+.+.++.+.... +..+..++|+.....+...+..+.++|+
T Consensus 75 pTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~l~~~~~~Il 153 (237)
T 3bor_A 75 QSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYM-GATCHACIGGTNVRNEMQKLQAEAPHIV 153 (237)
T ss_dssp CSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTT-TCCEEEECC-------------CCCSEE
T ss_pred CCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhc-CceEEEEECCCchHHHHHHHhcCCCCEE
Confidence 999999999999999988766567799999999999999999999998776 7888889998877766666666668999
Q ss_pred EEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEE
Q psy1548 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316 (448)
Q Consensus 237 V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i 316 (448)
|+||+++.+++..+...+.+++++|+||||++.++ ++...+..+++.++...|++++|||+++.+.++++.++.+|..+
T Consensus 154 v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~~~~~l~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~l~~p~~i 232 (237)
T 3bor_A 154 VGTPGRVFDMLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRI 232 (237)
T ss_dssp EECHHHHHHHHHTTSSCSTTCCEEEEESHHHHHHT-TCHHHHHHHHHHSCTTCEEEEECSSCCHHHHHHHHHHCSSCEEE
T ss_pred EECHHHHHHHHHhCCcCcccCcEEEECCchHhhcc-CcHHHHHHHHHhCCCCCeEEEEEEecCHHHHHHHHHHCCCCEEE
Confidence 99999999999988888899999999999999998 99999999999999999999999999999999999999999887
Q ss_pred EEc
Q psy1548 317 YVD 319 (448)
Q Consensus 317 ~~~ 319 (448)
.+.
T Consensus 233 ~v~ 235 (237)
T 3bor_A 233 LVK 235 (237)
T ss_dssp C--
T ss_pred Eec
Confidence 654
No 23
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=100.00 E-value=9.3e-35 Score=264.79 Aligned_cols=203 Identities=30% Similarity=0.515 Sum_probs=186.8
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
..|+++++++++++.+.+.| |..|+++ |++ +++.++.|+|+++++|||
T Consensus 3 ~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~apTG 50 (206)
T 1vec_A 3 NEFEDYCLKRELLMGIFEMG-----------------------WEKPSPI---QEE------SIPIALSGRDILARAKNG 50 (206)
T ss_dssp SSGGGSCCCHHHHHHHHTTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECCSS
T ss_pred CChhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHccCCCEEEECCCC
Confidence 46999999999999999999 9999888 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
+|||++|++|++..+.....++++||++|+++|+.|+.+.++.+....++.++..++|+.....+...+.. .++|+|+|
T Consensus 51 sGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~i~v~T 129 (206)
T 1vec_A 51 TGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIAT 129 (206)
T ss_dssp STTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHTTS-CCSEEEEC
T ss_pred CchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhcCC-CCCEEEeC
Confidence 99999999999998876666779999999999999999999999887767899999999887766666555 48999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEE
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i 316 (448)
|+++.+++..+...+.+++++|+||||++.+. ++...+..++..+++..|++++|||+++.+.++++.++.+|..+
T Consensus 130 ~~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~l~~p~~i 205 (206)
T 1vec_A 130 PGRILDLIKKGVAKVDHVQMIVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205 (206)
T ss_dssp HHHHHHHHHTTCSCCTTCCEEEEETHHHHTST-TTHHHHHHHHHHSCTTCEEEEEESCCCHHHHHHHHHHCSSCEEE
T ss_pred HHHHHHHHHcCCcCcccCCEEEEEChHHhHhh-CcHHHHHHHHHhCCccceEEEEEeeCCHHHHHHHHHHcCCCeEe
Confidence 99999999988888999999999999999997 99999999999999999999999999999999999999999765
No 24
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=100.00 E-value=6.4e-35 Score=270.35 Aligned_cols=208 Identities=27% Similarity=0.467 Sum_probs=182.7
Q ss_pred eeeeccCCccc-CCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcce
Q psy1548 74 YVSIHSSGFRD-FLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152 (448)
Q Consensus 74 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~v 152 (448)
..+.....|.+ +++++++++++.+.| |..|+++ |++ +++.++.|+|+
T Consensus 13 ~~p~p~~~f~~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~ 60 (228)
T 3iuy_A 13 LIPKPTCRFKDAFQQYPDLLKSIIRVG-----------------------ILKPTPI---QSQ------AWPIILQGIDL 60 (228)
T ss_dssp CCCCCCCSHHHHHTTCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHTTCCE
T ss_pred cCCCChhhHhhhhccCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCE
Confidence 45556677888 799999999999999 9999999 999 99999999999
Q ss_pred eeeccCCChhHHHHHHHHHHhhhcc------CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETT------DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~------~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
++++|||+|||++|++|++..+... ..++++||++||++|+.|+.+.++.+.. . ++++..++|+.....+..
T Consensus 61 l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~ 138 (228)
T 3iuy_A 61 IVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKYSY-K-GLKSICIYGGRNRNGQIE 138 (228)
T ss_dssp EEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHHCC-T-TCCEEEECC------CHH
T ss_pred EEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHhcc-c-CceEEEEECCCChHHHHH
Confidence 9999999999999999999877532 2567899999999999999999999863 2 788999999988777777
Q ss_pred HHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHH
Q psy1548 227 YLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~ 306 (448)
.+..+ ++|+|+||+++.+++......+.+++++|+||||++.++ +|...+..++..++++.|++++|||+++.+.+++
T Consensus 139 ~~~~~-~~iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~ 216 (228)
T 3iuy_A 139 DISKG-VDIIIATPGRLNDLQMNNSVNLRSITYLVIDEADKMLDM-EFEPQIRKILLDVRPDRQTVMTSATWPDTVRQLA 216 (228)
T ss_dssp HHHSC-CSEEEECHHHHHHHHHTTCCCCTTCCEEEECCHHHHHHT-TCHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHH
T ss_pred HhcCC-CCEEEECHHHHHHHHHcCCcCcccceEEEEECHHHHhcc-chHHHHHHHHHhCCcCCeEEEEEeeCCHHHHHHH
Confidence 77765 899999999999999988888999999999999999998 9999999999999999999999999999999999
Q ss_pred HHhcCCCeEEE
Q psy1548 307 KKFMHDPMEVY 317 (448)
Q Consensus 307 ~~~l~~~~~i~ 317 (448)
..++.+|..+.
T Consensus 217 ~~~l~~p~~i~ 227 (228)
T 3iuy_A 217 LSYLKDPMIVY 227 (228)
T ss_dssp HTTCSSCEEEE
T ss_pred HHHCCCCEEEe
Confidence 99999998775
No 25
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=100.00 E-value=8.1e-35 Score=270.19 Aligned_cols=210 Identities=32% Similarity=0.500 Sum_probs=186.1
Q ss_pred eeeeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCccee
Q psy1548 74 YVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153 (448)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vl 153 (448)
..+.....|+++++++.+++.+.+.| |..|+++ |++ +++.++.|+|++
T Consensus 18 ~~~~~~~~f~~l~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~l 65 (230)
T 2oxc_A 18 VLLAEPADFESLLLSRPVLEGLRAAG-----------------------FERPSPV---QLK------AIPLGRCGLDLI 65 (230)
T ss_dssp ------CCGGGGTCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEE
T ss_pred CCCCCCCCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEE
Confidence 34445568999999999999999999 9999988 999 999999999999
Q ss_pred eeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCC
Q psy1548 154 CQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNP 233 (448)
Q Consensus 154 i~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~ 233 (448)
+++|||+|||++|++|++..+.....+.++||++||++|+.|+.+.++.+....+++++..+.|+.....+...+. .+
T Consensus 66 ~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~ 143 (230)
T 2oxc_A 66 VQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRLK--KC 143 (230)
T ss_dssp EECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHTT--SC
T ss_pred EECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhcc--CC
Confidence 9999999999999999999887666677999999999999999999999987766889999999987666555543 38
Q ss_pred cEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhh-hHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCC
Q psy1548 234 QIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE-MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312 (448)
Q Consensus 234 ~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~-~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~ 312 (448)
+|+|+||+++.+++..+.+.+.+++++|+||||++.++ + |...+..+++.+++..|++++|||+++.+.+++..++.+
T Consensus 144 ~Iiv~Tp~~l~~~~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~~i~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~ 222 (230)
T 2oxc_A 144 HIAVGSPGRIKQLIELDYLNPGSIRLFILDEADKLLEE-GSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRD 222 (230)
T ss_dssp SEEEECHHHHHHHHHTTSSCGGGCCEEEESSHHHHHST-TSSHHHHHHHHHHSCSSCEEEEEESCCCHHHHHHHTTTCSS
T ss_pred CEEEECHHHHHHHHhcCCcccccCCEEEeCCchHhhcC-cchHHHHHHHHHhCCCCCeEEEEEeccCHHHHHHHHHHcCC
Confidence 99999999999999988888899999999999999987 7 999999999999999999999999999999999999999
Q ss_pred CeEEEE
Q psy1548 313 PMEVYV 318 (448)
Q Consensus 313 ~~~i~~ 318 (448)
|..+.+
T Consensus 223 p~~i~~ 228 (230)
T 2oxc_A 223 PTFVRL 228 (230)
T ss_dssp CEEECC
T ss_pred CeEEEc
Confidence 987754
No 26
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=100.00 E-value=8.3e-35 Score=267.96 Aligned_cols=207 Identities=31% Similarity=0.520 Sum_probs=185.4
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTG 159 (448)
..|+++++++.+++++.+.| |..|+++ |++ +++.++.|+|+++++|||
T Consensus 4 ~~f~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~a~TG 51 (219)
T 1q0u_A 4 TQFTRFPFQPFIIEAIKTLR-----------------------FYKPTEI---QER------IIPGALRGESMVGQSQTG 51 (219)
T ss_dssp CCGGGSCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHHTCCEEEECCSS
T ss_pred CCHhhCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECCCC
Confidence 56999999999999999999 9999888 999 999999999999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC---CceEEEEEcCcccHHhHHHHhcCCCcEE
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS---NIKVGVFFGGLPIQKDEEYLKTHNPQIV 236 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~---~~~v~~~~g~~~~~~~~~~l~~~~~~Il 236 (448)
+|||++|++|+++.+.....+.++||++||++|+.|+.+.++++....+ ++++..++|+.........+.. .++|+
T Consensus 52 sGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~~~Ii 130 (219)
T 1q0u_A 52 TGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPKDRMIVARCLIGGTDKQKALEKLNV-QPHIV 130 (219)
T ss_dssp HHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCGGGCCCEEEECCCSHHHHTTCCCSS-CCSEE
T ss_pred ChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhcccccceEEEEEeCCCCHHHHHHHcCC-CCCEE
Confidence 9999999999999987666677999999999999999999999987653 4788888888765554433333 48999
Q ss_pred EEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEE
Q psy1548 237 VGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316 (448)
Q Consensus 237 V~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i 316 (448)
|+||+++.+++..+...+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++++.++++.++.+|..+
T Consensus 131 v~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p~~~ 209 (219)
T 1q0u_A 131 IGTPGRINDFIREQALDVHTAHILVVDEADLMLDM-GFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFV 209 (219)
T ss_dssp EECHHHHHHHHHTTCCCGGGCCEEEECSHHHHHHT-TCHHHHHHHHHTSCTTCEEEEEESCCCGGGHHHHHHHCSSCEEE
T ss_pred EeCHHHHHHHHHcCCCCcCcceEEEEcCchHHhhh-ChHHHHHHHHHhCCcccEEEEEecCCCHHHHHHHHHHcCCCeEE
Confidence 99999999999988888899999999999999998 99999999999999999999999999999999999999999988
Q ss_pred EEcC
Q psy1548 317 YVDD 320 (448)
Q Consensus 317 ~~~~ 320 (448)
.+..
T Consensus 210 ~~~~ 213 (219)
T 1q0u_A 210 HVLE 213 (219)
T ss_dssp ECC-
T ss_pred Eeec
Confidence 6543
No 27
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=100.00 E-value=2.4e-34 Score=270.23 Aligned_cols=205 Identities=29% Similarity=0.523 Sum_probs=188.0
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|+++++++.+++++...| |..|+++ |++ +++.++.|+++++++||
T Consensus 42 ~~~f~~l~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~i~~~~~~lv~a~T 89 (249)
T 3ber_A 42 TKTFKDLGVTDVLCEACDQLG-----------------------WTKPTKI---QIE------AIPLALQGRDIIGLAET 89 (249)
T ss_dssp HCCTGGGTCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECCT
T ss_pred cCCHHHcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEEcCC
Confidence 356999999999999999999 9999988 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|+|||++|++|+++.+.....+.++||++||++|+.|+.+.++++.... ++++..++|+.....+...+..+ ++|+|+
T Consensus 90 GsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~-~~I~v~ 167 (249)
T 3ber_A 90 GSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSI-GVQSAVIVGGIDSMSQSLALAKK-PHIIIA 167 (249)
T ss_dssp TSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGG-TCCEEEECTTSCHHHHHHHHHTC-CSEEEE
T ss_pred CCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccC-CeeEEEEECCCChHHHHHHhcCC-CCEEEE
Confidence 9999999999999988777777799999999999999999999998877 88999999998877666666554 899999
Q ss_pred cHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 239 TPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 239 Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
||+++.+++.. +.+.+.+++++|+||||++.++ +|...+..++..+++..|+++||||+++.+.++++.++.+|..+.
T Consensus 168 Tp~~l~~~l~~~~~~~l~~~~~lViDEah~l~~~-~~~~~l~~i~~~~~~~~~~l~~SAT~~~~v~~~~~~~l~~p~~i~ 246 (249)
T 3ber_A 168 TPGRLIDHLENTKGFNLRALKYLVMDEADRILNM-DFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCA 246 (249)
T ss_dssp CHHHHHHHHHHSTTCCCTTCCEEEECSHHHHHHT-TCHHHHHHHHHSSCSSSEEEEEESSCCHHHHHHHHHHCSSCEEEE
T ss_pred CHHHHHHHHHcCCCcCccccCEEEEcChhhhhcc-ChHHHHHHHHHhCCCCCeEEEEeccCCHHHHHHHHHHCCCCEEEE
Confidence 99999998875 5567899999999999999998 999999999999999999999999999999999999999998876
Q ss_pred E
Q psy1548 318 V 318 (448)
Q Consensus 318 ~ 318 (448)
+
T Consensus 247 v 247 (249)
T 3ber_A 247 V 247 (249)
T ss_dssp C
T ss_pred e
Confidence 5
No 28
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=100.00 E-value=7.3e-35 Score=274.36 Aligned_cols=219 Identities=28% Similarity=0.449 Sum_probs=186.5
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
....|.++++++.+++++...| |..|+++ |.+ +++.++.|+|+++++|
T Consensus 21 ~~~~f~~l~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~i~~~~~~l~~a~ 68 (253)
T 1wrb_A 21 VIENFDELKLDPTIRNNILLAS-----------------------YQRPTPI---QKN------AIPAILEHRDIMACAQ 68 (253)
T ss_dssp CCCSSGGGSCCCSTTTTTTTTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECC
T ss_pred ccCCHhhCCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEECC
Confidence 3457999999999999999999 9999988 999 9999999999999999
Q ss_pred CCChhHHHHHHHHHHhhhccC---------CCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 158 SGMGKTAVFVLATLQQLETTD---------SNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~~~~---------~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
||+|||++|++|++..+.... .++++||++||++|+.|+.+.++.+.... ++++..++|+.....+...+
T Consensus 69 TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~ 147 (253)
T 1wrb_A 69 TGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSESQKFSLNT-PLRSCVVYGGADTHSQIREV 147 (253)
T ss_dssp TTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHHHHHHTTS-SCCEEEECSSSCSHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHHHHHhccC-CceEEEEECCCCHHHHHHHh
Confidence 999999999999998875432 34689999999999999999999998776 78899999998877777666
Q ss_pred hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh--CCC--CCeEEEEeccCCccHHH
Q psy1548 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS--SPH--TKQVMMFSATLSKEIRP 304 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~--l~~--~~q~i~~SAT~~~~~~~ 304 (448)
..+ ++|+|+||+++.+++......+.+++++|+||||++.++ +|+..+..++.. ++. ..|++++|||+++++.+
T Consensus 148 ~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~~~~ 225 (253)
T 1wrb_A 148 QMG-CHLLVATPGRLVDFIEKNKISLEFCKYIVLDEADRMLDM-GFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQK 225 (253)
T ss_dssp SSC-CSEEEECHHHHHHHHHTTSBCCTTCCEEEEETHHHHHHT-TCHHHHHHHHHSSCCCCGGGCEEEEEESSCCHHHHH
T ss_pred CCC-CCEEEECHHHHHHHHHcCCCChhhCCEEEEeCHHHHHhC-chHHHHHHHHhhccCCCCCCcEEEEEEEeCCHHHHH
Confidence 654 899999999999999988888999999999999999998 999999999985 444 68999999999999999
Q ss_pred HHHHhcCCCeEEEEcCcccccccceeEE
Q psy1548 305 VCKKFMHDPMEVYVDDEAKLTLHGLQQH 332 (448)
Q Consensus 305 ~~~~~l~~~~~i~~~~~~~~~~~~i~~~ 332 (448)
+++.++.+|..+.+... .....+++|+
T Consensus 226 ~~~~~l~~~~~i~~~~~-~~~~~~i~q~ 252 (253)
T 1wrb_A 226 LAADFLYNYIFMTVGRV-GSTSDSIKQE 252 (253)
T ss_dssp HHHHHCSSCEEEEEC-------------
T ss_pred HHHHHcCCCEEEEECCC-CCCcCCceec
Confidence 99999999999988766 3455566654
No 29
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=100.00 E-value=5.3e-34 Score=263.29 Aligned_cols=210 Identities=35% Similarity=0.556 Sum_probs=181.5
Q ss_pred eeccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeee
Q psy1548 76 SIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155 (448)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ 155 (448)
+.....|.++++++.+++.+.+.| |..|+++ |++ +++.++.|+|++++
T Consensus 10 ~~~~~~f~~l~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~ 57 (224)
T 1qde_A 10 DKVVYKFDDMELDENLLRGVFGYG-----------------------FEEPSAI---QQR------AIMPIIEGHDVLAQ 57 (224)
T ss_dssp CCCCCCGGGGTCCHHHHHHHHHHT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEE
T ss_pred CcccCChhhcCCCHHHHHHHHHCC-----------------------CCCCcHH---HHH------HHHHHhcCCCEEEE
Confidence 334567999999999999999999 9999888 999 99999999999999
Q ss_pred ccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcE
Q psy1548 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235 (448)
Q Consensus 156 apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~I 235 (448)
+|||+|||++|++|+++.+.....+.++||++|+++|+.|+.+.++.+.... ++++..+.|+.....+...+.. ++|
T Consensus 58 ~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~--~~i 134 (224)
T 1qde_A 58 AQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM-DIKVHACIGGTSFVEDAEGLRD--AQI 134 (224)
T ss_dssp CCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEEEECC----------CTT--CSE
T ss_pred CCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhccc-CceEEEEeCCcchHHHHhcCCC--CCE
Confidence 9999999999999999988776677899999999999999999999998877 8899999998876655544443 799
Q ss_pred EEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 236 lV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
+|+||+++.+++..+...+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++.+.++++.++.+|..
T Consensus 135 iv~Tp~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~~~l~~i~~~~~~~~~~i~lSAT~~~~~~~~~~~~~~~p~~ 213 (224)
T 1qde_A 135 VVGTPGRVFDNIQRRRFRTDKIKMFILDEADEMLSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVR 213 (224)
T ss_dssp EEECHHHHHHHHHTTSSCCTTCCEEEEETHHHHHHT-TCHHHHHHHHHHSCTTCEEEEEESSCCHHHHHHHHHHCSSCEE
T ss_pred EEECHHHHHHHHHhCCcchhhCcEEEEcChhHHhhh-hhHHHHHHHHHhCCccCeEEEEEeecCHHHHHHHHHHCCCCEE
Confidence 999999999999988888999999999999999998 9999999999999999999999999999999999999999998
Q ss_pred EEEcCc
Q psy1548 316 VYVDDE 321 (448)
Q Consensus 316 i~~~~~ 321 (448)
+.+...
T Consensus 214 i~~~~~ 219 (224)
T 1qde_A 214 ILVKKD 219 (224)
T ss_dssp EC----
T ss_pred EEecCC
Confidence 876544
No 30
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=9e-35 Score=322.78 Aligned_cols=262 Identities=19% Similarity=0.198 Sum_probs=209.2
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|..+++||++ +++.+..|++++++||||||||++|.+|++..+.. +.+++|++||++|+.|+++.+..+..
T Consensus 182 ~f~ltp~Q~~------AI~~i~~g~dvLV~ApTGSGKTlva~l~i~~~l~~---g~rvlvl~PtraLa~Q~~~~l~~~~~ 252 (1108)
T 3l9o_A 182 PFTLDPFQDT------AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG 252 (1108)
T ss_dssp SSCCCHHHHH------HHHHHTTTCCEEEECCSSSHHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHTS
T ss_pred CCCCCHHHHH------HHHHHHcCCCEEEECCCCCChHHHHHHHHHHHHhc---CCeEEEEcCcHHHHHHHHHHHHHHhC
Confidence 4445555999 99999999999999999999999999999988743 45899999999999999999998763
Q ss_pred cCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 206 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
.++.++|+.... ..++|+|+||++|.+++..+...+.++++|||||||++.++ ++...+..++..+
T Consensus 253 -----~VglltGd~~~~--------~~~~IlV~Tpe~L~~~L~~~~~~l~~l~lVVIDEaH~l~d~-~rg~~~e~ii~~l 318 (1108)
T 3l9o_A 253 -----DVGLMTGDITIN--------PDAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILL 318 (1108)
T ss_dssp -----SEEEECSSCBCC--------CSCSEEEEEHHHHHHHHHHCSSHHHHEEEEEEETGGGTTSH-HHHHHHHHHHHHS
T ss_pred -----CccEEeCccccC--------CCCCEEEeChHHHHHHHHcCccccccCCEEEEhhhhhcccc-chHHHHHHHHHhc
Confidence 577888887643 24899999999999999888777899999999999999998 9999999999999
Q ss_pred CCCCeEEEEeccCCcc--HHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCc-------------------------
Q psy1548 286 PHTKQVMMFSATLSKE--IRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKE------------------------- 338 (448)
Q Consensus 286 ~~~~q~i~~SAT~~~~--~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~------------------------- 338 (448)
++..|+++||||+++. +..++......|..+..... .+..+.++++....
T Consensus 319 ~~~~qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~~~---rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l 395 (1108)
T 3l9o_A 319 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF---RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 395 (1108)
T ss_dssp CTTSEEEEEECSCSSCHHHHHHHHHHTCSCEEEEEECC---CSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC---CcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHH
Confidence 9999999999999875 44666666667766655433 12233333322110
Q ss_pred ------------------------------chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCc--------
Q psy1548 339 ------------------------------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP-------- 380 (448)
Q Consensus 339 ------------------------------~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~-------- 380 (448)
..+...+...+.....+++||||++++.|+.++..|...++.
T Consensus 396 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 475 (1108)
T 3l9o_A 396 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 475 (1108)
T ss_dssp -----------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CH
T ss_pred HhhhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 122333444455556679999999999999999998764332
Q ss_pred -------------------------------EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 381 -------------------------------AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 381 -------------------------------~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+..+||+|++.+|..+++.|++|. +.|+|+|+.
T Consensus 476 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G~--ikVLVAT~v 539 (1108)
T 3l9o_A 476 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF--LKVLFATET 539 (1108)
T ss_dssp HHHGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHTC--CCEEEEESC
T ss_pred HHHHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCCC--CeEEEECcH
Confidence 799999999999999999999988 567777764
No 31
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=100.00 E-value=8.7e-34 Score=268.42 Aligned_cols=201 Identities=24% Similarity=0.403 Sum_probs=178.0
Q ss_pred cCCcccCC--CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeec
Q psy1548 79 SSGFRDFL--LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156 (448)
Q Consensus 79 ~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~a 156 (448)
...|.+++ +++++++++.+.| |..|+++ |.+ +++.++.|+|+++++
T Consensus 51 ~~~f~~l~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~~~~~~~lv~a 98 (262)
T 3ly5_A 51 DTSFASLCNLVNENTLKAIKEMG-----------------------FTNMTEI---QHK------SIRPLLEGRDLLAAA 98 (262)
T ss_dssp GGCC-----CCCHHHHHHHHHTT-----------------------CCBCCHH---HHH------HHHHHHHTCCCEECC
T ss_pred cCChhHhccccCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCcEEEEc
Confidence 35677777 9999999999999 9999999 999 999999999999999
Q ss_pred cCCChhHHHHHHHHHHhhhcc----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCC
Q psy1548 157 KSGMGKTAVFVLATLQQLETT----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN 232 (448)
Q Consensus 157 pTGsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~ 232 (448)
|||+|||++|++|+++.+... ..+.++||++||++|+.|+.+.++++.... +..+..++|+.....+...+..+
T Consensus 99 ~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~- 176 (262)
T 3ly5_A 99 KTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTHH-VHTYGLIMGGSNRSAEAQKLGNG- 176 (262)
T ss_dssp CTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTC-CSCEEEECSSSCHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHHhcCC-
Confidence 999999999999999887642 235689999999999999999999998877 78999999998877777777666
Q ss_pred CcEEEEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcC
Q psy1548 233 PQIVVGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMH 311 (448)
Q Consensus 233 ~~IlV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~ 311 (448)
++|+|+||+++.+++... ...+.+++++|+||||++.++ +|...+..+++.++..+|+++||||+++++.++++.+++
T Consensus 177 ~~Iiv~Tp~~l~~~~~~~~~~~~~~l~~lViDEah~l~~~-~~~~~l~~i~~~~~~~~q~l~~SAT~~~~v~~~~~~~l~ 255 (262)
T 3ly5_A 177 INIIVATPGRLLDHMQNTPGFMYKNLQCLVIDEADRILDV-GFEEELKQIIKLLPTRRQTMLFSATQTRKVEDLARISLK 255 (262)
T ss_dssp CSEEEECHHHHHHHHHHCTTCCCTTCCEEEECSHHHHHHT-TCHHHHHHHHHHSCSSSEEEEECSSCCHHHHHHHHHHCS
T ss_pred CCEEEEcHHHHHHHHHccCCcccccCCEEEEcChHHHhhh-hHHHHHHHHHHhCCCCCeEEEEEecCCHHHHHHHHHHcC
Confidence 899999999999888664 467899999999999999998 999999999999999999999999999999999999887
Q ss_pred CCe
Q psy1548 312 DPM 314 (448)
Q Consensus 312 ~~~ 314 (448)
++.
T Consensus 256 ~~~ 258 (262)
T 3ly5_A 256 KEP 258 (262)
T ss_dssp SCC
T ss_pred CCC
Confidence 654
No 32
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.8e-34 Score=310.75 Aligned_cols=283 Identities=14% Similarity=0.164 Sum_probs=221.8
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeeccCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQAKSG 159 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~apTG 159 (448)
.|.++++++.+.+++.+.| |..|+++ |.+ +++. +..|+++++++|||
T Consensus 2 ~f~~l~l~~~~~~~l~~~g-----------------------~~~l~~~---Q~~------~i~~~~~~~~~~lv~apTG 49 (720)
T 2zj8_A 2 RVDELRVDERIKSTLKERG-----------------------IESFYPP---QAE------ALKSGILEGKNALISIPTA 49 (720)
T ss_dssp BGGGCCSCHHHHHHHHHTT-----------------------CCBCCHH---HHH------HHTTTGGGTCEEEEECCGG
T ss_pred cHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhcCCCcEEEEcCCc
Confidence 5899999999999999999 9999998 999 9998 78899999999999
Q ss_pred ChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEc
Q psy1548 160 MGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGT 239 (448)
Q Consensus 160 sGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~T 239 (448)
||||++|.+|++..+... +.+++|++|+++|+.|+.+.++++.. + +++++.++|+....... + +.++|+|+|
T Consensus 50 sGKT~~~~l~il~~~~~~--~~~~l~i~P~raLa~q~~~~~~~l~~-~-g~~v~~~~G~~~~~~~~--~--~~~~Iiv~T 121 (720)
T 2zj8_A 50 SGKTLIAEIAMVHRILTQ--GGKAVYIVPLKALAEEKFQEFQDWEK-I-GLRVAMATGDYDSKDEW--L--GKYDIIIAT 121 (720)
T ss_dssp GCHHHHHHHHHHHHHHHH--CSEEEEECSSGGGHHHHHHHTGGGGG-G-TCCEEEECSCSSCCCGG--G--GGCSEEEEC
T ss_pred cHHHHHHHHHHHHHHHhC--CCEEEEEcCcHHHHHHHHHHHHHHHh-c-CCEEEEecCCCCccccc--c--CCCCEEEEC
Confidence 999999999999877533 35899999999999999999976654 3 78999999987654331 1 237999999
Q ss_pred HHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEc
Q psy1548 240 PGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319 (448)
Q Consensus 240 p~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~ 319 (448)
|+++..++......+++++++|+||+|++.++ ++...+..++..++...|++++|||+++ ..++..++ ..+. +..
T Consensus 122 pe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~-~r~~~~~~ll~~l~~~~~ii~lSATl~n-~~~~~~~l-~~~~-~~~- 196 (720)
T 2zj8_A 122 AEKFDSLLRHGSSWIKDVKILVADEIHLIGSR-DRGATLEVILAHMLGKAQIIGLSATIGN-PEELAEWL-NAEL-IVS- 196 (720)
T ss_dssp HHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHHBTTBEEEEEECCCSC-HHHHHHHT-TEEE-EEC-
T ss_pred HHHHHHHHHcChhhhhcCCEEEEECCcccCCC-cccHHHHHHHHHhhcCCeEEEEcCCcCC-HHHHHHHh-CCcc-cCC-
Confidence 99999998887777899999999999999887 8888999998888778999999999986 35555544 3211 111
Q ss_pred CcccccccceeEEEE------EcC-----cchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC-----------
Q psy1548 320 DEAKLTLHGLQQHYV------KLK-----ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ----------- 377 (448)
Q Consensus 320 ~~~~~~~~~i~~~~~------~~~-----~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~----------- 377 (448)
. ..+..+...+. ... ...+...+.+.+.. ++++||||++++.|+.++..|.+.
T Consensus 197 -~--~rp~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~ 271 (720)
T 2zj8_A 197 -D--WRPVKLRRGVFYQGFVTWEDGSIDRFSSWEELVYDAIRK--KKGALIFVNMRRKAERVALELSKKVKSLLTKPEIR 271 (720)
T ss_dssp -C--CCSSEEEEEEEETTEEEETTSCEEECSSTTHHHHHHHHT--TCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHH
T ss_pred -C--CCCCcceEEEEeCCeeeccccchhhhhHHHHHHHHHHhC--CCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHH
Confidence 1 01112222111 111 23345555555543 579999999999999999998753
Q ss_pred -------C---------------CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 378 -------N---------------FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 378 -------g---------------~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+ ..+.++||+|++++|..+++.|++|+ +.|.++|+.
T Consensus 272 ~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vlvaT~~ 329 (720)
T 2zj8_A 272 ALNELADSLEENPTNEKLAKAIRGGVAFHHAGLGRDERVLVEENFRKGI--IKAVVATPT 329 (720)
T ss_dssp HHHHHHHTSCSCHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTS--SCEEEECST
T ss_pred HHHHHHHHHhcccchHHHHHHHhcCeeeecCCCCHHHHHHHHHHHHCCC--CeEEEECcH
Confidence 1 24899999999999999999999987 466667664
No 33
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=100.00 E-value=3.1e-33 Score=254.78 Aligned_cols=201 Identities=33% Similarity=0.521 Sum_probs=182.1
Q ss_pred CcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCC
Q psy1548 81 GFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160 (448)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGs 160 (448)
.|+++++++.+++.+.+.+ |..|+++ |++ +++.++.|+++++++|||+
T Consensus 2 ~f~~~~l~~~l~~~l~~~~-----------------------~~~~~~~---Q~~------~i~~~~~~~~~li~~~TGs 49 (207)
T 2gxq_A 2 EFKDFPLKPEILEALHGRG-----------------------LTTPTPI---QAA------ALPLALEGKDLIGQARTGT 49 (207)
T ss_dssp CGGGSCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHHHTTCCEEEECCTTS
T ss_pred ChhhcCCCHHHHHHHHHcC-----------------------CCCCCHH---HHH------HHHHHcCCCCEEEECCCCC
Confidence 5899999999999999999 9999988 999 9999999999999999999
Q ss_pred hhHHHHHHHHHHhhhcc---CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEE
Q psy1548 161 GKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVV 237 (448)
Q Consensus 161 GKT~~~~l~~l~~l~~~---~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV 237 (448)
|||++|++|++..+... ..++++||++|+++|+.|+.+.++.+.. ++++..++|+.....+...+..+ ++|+|
T Consensus 50 GKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~i~v 125 (207)
T 2gxq_A 50 GKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAP---HLKVVAVYGGTGYGKQKEALLRG-ADAVV 125 (207)
T ss_dssp CHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCT---TSCEEEECSSSCSHHHHHHHHHC-CSEEE
T ss_pred hHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhh---cceEEEEECCCChHHHHHHhhCC-CCEEE
Confidence 99999999999987542 3457899999999999999999999875 46788889988777666666654 89999
Q ss_pred EcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEE
Q psy1548 238 GTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~ 317 (448)
+||+++.+++..+...+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++.+.++++.++.+|..+.
T Consensus 126 ~T~~~l~~~~~~~~~~~~~~~~iViDEah~~~~~-~~~~~~~~i~~~~~~~~~~i~~SAT~~~~~~~~~~~~~~~p~~i~ 204 (207)
T 2gxq_A 126 ATPGRALDYLRQGVLDLSRVEVAVLDEADEMLSM-GFEEEVEALLSATPPSRQTLLFSATLPSWAKRLAERYMKNPVLIN 204 (207)
T ss_dssp ECHHHHHHHHHHTSSCCTTCSEEEEESHHHHHHT-TCHHHHHHHHHTSCTTSEEEEECSSCCHHHHHHHHHHCSSCEEEE
T ss_pred ECHHHHHHHHHcCCcchhhceEEEEEChhHhhcc-chHHHHHHHHHhCCccCeEEEEEEecCHHHHHHHHHHcCCCeEEE
Confidence 9999999999888888999999999999999998 999999999999999999999999999999999999999998876
Q ss_pred E
Q psy1548 318 V 318 (448)
Q Consensus 318 ~ 318 (448)
+
T Consensus 205 ~ 205 (207)
T 2gxq_A 205 V 205 (207)
T ss_dssp C
T ss_pred c
Confidence 4
No 34
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=1.6e-33 Score=303.21 Aligned_cols=283 Identities=17% Similarity=0.165 Sum_probs=220.1
Q ss_pred CCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccccee-eeeCcceeeeccC
Q psy1548 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK-AVLGMDILCQAKS 158 (448)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~-~~~g~~vli~apT 158 (448)
..|.++++++.+.+++.+.| |..|+++ |.+ +++. +..|+++++++||
T Consensus 8 ~~~~~l~l~~~~~~~l~~~g-----------------------~~~l~~~---Q~~------~i~~~~~~~~~~lv~apT 55 (715)
T 2va8_A 8 MPIEDLKLPSNVIEIIKKRG-----------------------IKKLNPP---QTE------AVKKGLLEGNRLLLTSPT 55 (715)
T ss_dssp CBGGGSSSCHHHHHHHHTTS-----------------------CCBCCHH---HHH------HHHTTTTTTCCEEEECCT
T ss_pred CcHHHcCCCHHHHHHHHhCC-----------------------CCCCCHH---HHH------HHHHHhcCCCcEEEEcCC
Confidence 56999999999999999999 9999998 999 9988 7789999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||+++.+|++..+... +.+++|++|+++|+.|+.+.++.+.. . +++++..+|+....... +. .++|+|+
T Consensus 56 GsGKT~~~~l~il~~~~~~--~~~il~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~--~~--~~~Iiv~ 127 (715)
T 2va8_A 56 GSGKTLIAEMGIISFLLKN--GGKAIYVTPLRALTNEKYLTFKDWEL-I-GFKVAMTSGDYDTDDAW--LK--NYDIIIT 127 (715)
T ss_dssp TSCHHHHHHHHHHHHHHHS--CSEEEEECSCHHHHHHHHHHHGGGGG-G-TCCEEECCSCSSSCCGG--GG--GCSEEEE
T ss_pred CCcHHHHHHHHHHHHHHHC--CCeEEEEeCcHHHHHHHHHHHHHhhc-C-CCEEEEEeCCCCCchhh--cC--CCCEEEE
Confidence 9999999999999876533 45899999999999999999865543 3 78999999987654431 22 3799999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~ 318 (448)
||+++..++..+...+++++++|+||+|.+.++ .+...+..++..++ ..|++++|||+++ ..++..++. .+. +..
T Consensus 128 Tpe~l~~~~~~~~~~l~~~~~vIiDE~H~l~~~-~~~~~l~~i~~~~~-~~~ii~lSATl~n-~~~~~~~l~-~~~-~~~ 202 (715)
T 2va8_A 128 TYEKLDSLWRHRPEWLNEVNYFVLDELHYLNDP-ERGPVVESVTIRAK-RRNLLALSATISN-YKQIAKWLG-AEP-VAT 202 (715)
T ss_dssp CHHHHHHHHHHCCGGGGGEEEEEECSGGGGGCT-TTHHHHHHHHHHHH-TSEEEEEESCCTT-HHHHHHHHT-CEE-EEC
T ss_pred cHHHHHHHHhCChhHhhccCEEEEechhhcCCc-ccchHHHHHHHhcc-cCcEEEEcCCCCC-HHHHHHHhC-CCc-cCC
Confidence 999999999887777899999999999998876 78888888887776 7899999999986 355555443 221 111
Q ss_pred cCcccccccceeEE------------EEEcC--------cchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCC
Q psy1548 319 DDEAKLTLHGLQQH------------YVKLK--------ENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378 (448)
Q Consensus 319 ~~~~~~~~~~i~~~------------~~~~~--------~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g 378 (448)
.. .+..+... ..... ...+...+.+.+. .++++||||++++.|+.++..|.+..
T Consensus 203 ~~----r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~ 276 (715)
T 2va8_A 203 NW----RPVPLIEGVIYPERKKKEYNVIFKDNTTKKVHGDDAIIAYTLDSLS--KNGQVLVFRNSRKMAESTALKIANYM 276 (715)
T ss_dssp CC----CSSCEEEEEEEECSSTTEEEEEETTSCEEEEESSSHHHHHHHHHHT--TTCCEEEECSSHHHHHHHHHHHHHTT
T ss_pred CC----CCCCceEEEEecCCcccceeeecCcchhhhcccchHHHHHHHHHHh--cCCCEEEEECCHHHHHHHHHHHHHHH
Confidence 00 01111111 11111 2345555555554 46799999999999999999998642
Q ss_pred ------------------------------------CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 379 ------------------------------------FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 379 ------------------------------------~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..+.++||+|++++|..+++.|++|+ +.|.++|+.
T Consensus 277 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~r~~v~~~f~~g~--~~vlvaT~~ 347 (715)
T 2va8_A 277 NFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAYHHAGLSKALRDLIEEGFRQRK--IKVIVATPT 347 (715)
T ss_dssp TSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEEECTTSCHHHHHHHHHHHHTTC--SCEEEECGG
T ss_pred hhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEEECCCCCHHHHHHHHHHHHcCC--CeEEEEChH
Confidence 24899999999999999999999987 455565553
No 35
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=100.00 E-value=3.3e-33 Score=260.21 Aligned_cols=206 Identities=27% Similarity=0.491 Sum_probs=182.8
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
...|.++++++.+++.+.+.+ |..|+++ |.+ +++.++.|+|+++++||
T Consensus 24 ~~~f~~~~l~~~l~~~l~~~~-----------------------~~~~~~~---Q~~------~i~~~~~~~~~li~a~T 71 (236)
T 2pl3_A 24 ITRFSDFPLSKKTLKGLQEAQ-----------------------YRLVTEI---QKQ------TIGLALQGKDVLGAAKT 71 (236)
T ss_dssp CSBGGGSCCCHHHHHHHHHTT-----------------------CCBCCHH---HHH------HHHHHHTTCCEEEECCT
T ss_pred cCCHhhcCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHHhCCCCEEEEeCC
Confidence 457999999999999999999 9999998 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhcc----CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCc
Q psy1548 159 GMGKTAVFVLATLQQLETT----DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~----~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~ 234 (448)
|+|||++|++|+++.+... ..+.++||++||++|+.|+.+.++.+.... ++++..++|+.....+...+. .++
T Consensus 72 GsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~--~~~ 148 (236)
T 2pl3_A 72 GSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGKNH-DFSAGLIIGGKDLKHEAERIN--NIN 148 (236)
T ss_dssp TSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTTS-SCCEEEECCC--CHHHHHHHT--TCS
T ss_pred CCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhCCC-CeeEEEEECCCCHHHHHHhCC--CCC
Confidence 9999999999999887532 245689999999999999999999998776 789999999987766655553 489
Q ss_pred EEEEcHHHHHHHHHCC-CCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCC
Q psy1548 235 IVVGTPGRILALVRNK-KLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDP 313 (448)
Q Consensus 235 IlV~Tp~~l~~~l~~~-~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~ 313 (448)
|+|+||+++.+++... .+.+.+++++|+||||++.++ ++...+..++..+++..|++++|||+++.+.++++.++.+|
T Consensus 149 iiv~Tp~~l~~~l~~~~~~~~~~~~~lViDEah~~~~~-~~~~~~~~i~~~~~~~~~~l~~SAT~~~~~~~~~~~~~~~p 227 (236)
T 2pl3_A 149 ILVCTPGRLLQHMDETVSFHATDLQMLVLDEADRILDM-GFADTMNAVIENLPKKRQTLLFSATQTKSVKDLARLSLKNP 227 (236)
T ss_dssp EEEECHHHHHHHHHHCSSCCCTTCCEEEETTHHHHHHT-TTHHHHHHHHHTSCTTSEEEEEESSCCHHHHHHHHHSCSSC
T ss_pred EEEECHHHHHHHHHhcCCcccccccEEEEeChHHHhcC-CcHHHHHHHHHhCCCCCeEEEEEeeCCHHHHHHHHHhCCCC
Confidence 9999999999988664 567889999999999999998 99999999999999999999999999999999999999999
Q ss_pred eEEEEcC
Q psy1548 314 MEVYVDD 320 (448)
Q Consensus 314 ~~i~~~~ 320 (448)
..+.+..
T Consensus 228 ~~i~~~~ 234 (236)
T 2pl3_A 228 EYVWVHE 234 (236)
T ss_dssp EEEECCC
T ss_pred EEEEeCC
Confidence 9887643
No 36
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=1.9e-33 Score=293.63 Aligned_cols=306 Identities=19% Similarity=0.219 Sum_probs=186.8
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
++||.+ +++.++.|+++++++|||+|||++|++|+++.+...+. +.++||++||++|+.|+.+.++++....
T Consensus 9 ~~~Q~~------~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 9 RSYQIE------LAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp CHHHHH------HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CHHHHH------HHHHHHcCCCEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhccc
Confidence 444999 99999999999999999999999999999998866442 5689999999999999999999998877
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-cCCCeeEEEecchhHHHhhhhhHHH-HHHHHHh-
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-NLSLLKHFILDECDKMLEQLEMRRD-VQEIFRS- 284 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~-~~~i~~~- 284 (448)
++++..++|+.....+...+..+ ++|+|+||+++.+++..+.+ .+.+++++|+||||++.++ +.... +...+..
T Consensus 83 -~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~-~~~~~~~~~~~~~~ 159 (556)
T 4a2p_A 83 -GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGN-HPYNVLMTRYLEQK 159 (556)
T ss_dssp -TCCEEECCCC-----CHHHHHHH-CSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTT-SHHHHHHHHHHHHH
T ss_pred -CceEEEEeCCCCcchhHHHhhCC-CCEEEECHHHHHHHHHhCcccccccCCEEEEECCcccCCc-chHHHHHHHHHHhh
Confidence 89999999998766665555554 89999999999999998877 7899999999999999876 43333 2233322
Q ss_pred ---CCCCCeEEEEeccCCcc-----------HHHHHHH------------------hcCCCeEEEEcCccccccc-----
Q psy1548 285 ---SPHTKQVMMFSATLSKE-----------IRPVCKK------------------FMHDPMEVYVDDEAKLTLH----- 327 (448)
Q Consensus 285 ---l~~~~q~i~~SAT~~~~-----------~~~~~~~------------------~l~~~~~i~~~~~~~~~~~----- 327 (448)
.++..|++++|||++.. +..+... +...|..............
T Consensus 160 ~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (556)
T 4a2p_A 160 FNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHNPFAAII 239 (556)
T ss_dssp HCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCCSCCHHHHHH
T ss_pred hcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHhcCCCCceEEEEcCCCcCChHHHHH
Confidence 14568999999998531 1112121 2222222111000000000
Q ss_pred ---------------ceeEEEE----------------------------------------------------------
Q psy1548 328 ---------------GLQQHYV---------------------------------------------------------- 334 (448)
Q Consensus 328 ---------------~i~~~~~---------------------------------------------------------- 334 (448)
.+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 319 (556)
T 4a2p_A 240 SNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYNDALIISE 319 (556)
T ss_dssp HHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 0000000
Q ss_pred -----------------------------------------------EcCcchHHHHHHHHHhh----CCCCeEEEEECc
Q psy1548 335 -----------------------------------------------KLKENEKNKKLFELLDV----LEFNQVVIFVKS 363 (448)
Q Consensus 335 -----------------------------------------------~~~~~~k~~~L~~ll~~----~~~~~~IIF~~s 363 (448)
......|...|..++.. ..+.++||||++
T Consensus 320 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~~k~lVF~~~ 399 (556)
T 4a2p_A 320 DARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRTLLFAKT 399 (556)
T ss_dssp HSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTTCCEEEEESS
T ss_pred hhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCCceEEEEEcc
Confidence 00013466666666654 456799999999
Q ss_pred cHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEEecChhhHHHHHHHHHHhcC
Q psy1548 364 VTRCIALSTLLSEQ------------NFPAVSIHRGMTQEERLKKYQEFKD-FHKGLAITFASDENDAKILNNVQDRFDV 430 (448)
Q Consensus 364 ~~~a~~l~~~L~~~------------g~~~~~lh~~~~~~eR~~~l~~F~~-g~~g~~I~~~t~~~d~~~l~~i~~~~~~ 430 (448)
+..++.+++.|++. |.....+||+|++++|.++++.|++ |+ +.|+++|+...+++ ++.+.-.+
T Consensus 400 ~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~--~~vLvaT~~~~~Gi--Dip~v~~V 475 (556)
T 4a2p_A 400 RALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVADEGI--DIVQCNLV 475 (556)
T ss_dssp HHHHHHHHHHHTTCSGGGSCCEEC--------------------------------CCEEEEEC-------------CEE
T ss_pred HHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCc--eEEEEEcCchhcCC--CchhCCEE
Confidence 99999999999876 5566677889999999999999999 77 45778888766665 77777777
Q ss_pred CCCCCCccccccccccCC
Q psy1548 431 SISELPDEIDLSTYIEGR 448 (448)
Q Consensus 431 ~~~~~p~~~~~~~~~~~~ 448 (448)
-..++|.+...+.++.||
T Consensus 476 I~~d~p~s~~~~~Qr~GR 493 (556)
T 4a2p_A 476 VLYEYSGNVTKMIQVRGR 493 (556)
T ss_dssp EEETCCSCHHHHHHC---
T ss_pred EEeCCCCCHHHHHHhcCC
Confidence 788889999999999998
No 37
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.7e-34 Score=310.10 Aligned_cols=311 Identities=19% Similarity=0.229 Sum_probs=197.6
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~ 200 (448)
|..|+++ |.+ +++.++.|+|+++++|||+|||++|++|+++.+...+. +.++||++||++|+.|+.+.+
T Consensus 11 ~~~lr~~---Q~~------~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~ 81 (696)
T 2ykg_A 11 PFKPRNY---QLE------LALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVF 81 (696)
T ss_dssp --CCCHH---HHH------HHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCccHH---HHH------HHHHHHcCCCEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHH
Confidence 7777777 999 99999999999999999999999999999988765432 258999999999999999999
Q ss_pred HHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-cCCCeeEEEecchhHHHhhhhhHHHHH
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-NLSLLKHFILDECDKMLEQLEMRRDVQ 279 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~~~ 279 (448)
+++.... ++++..++|+.....+...+..+ ++|+|+||++|.+.+..+.+ .+.+++++|+||||++.+...+...+.
T Consensus 82 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~-~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 82 SKYFERH-GYRVTGISGATAENVPVEQIVEN-NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp HHHTTTT-TCCEEEECSSSCSSSCHHHHHHT-CSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHhccC-CceEEEEeCCccccccHHHhccC-CCEEEECHHHHHHHHhcCcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 9998766 88999999998766665555554 89999999999999998776 789999999999999876533443333
Q ss_pred HHHHh-----CCCCCeEEEEeccCCc-------c-HHHHH---------------------HHhcCCCeEEEEcCccccc
Q psy1548 280 EIFRS-----SPHTKQVMMFSATLSK-------E-IRPVC---------------------KKFMHDPMEVYVDDEAKLT 325 (448)
Q Consensus 280 ~i~~~-----l~~~~q~i~~SAT~~~-------~-~~~~~---------------------~~~l~~~~~i~~~~~~~~~ 325 (448)
..+.. .++..+++++|||+.. + ...+. ..+...|............
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHhhcCCCceeEEecCcccC
Confidence 33332 2467899999999861 1 11111 1122223222111000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1548 326 -------------------------------------------------------------------------------- 325 (448)
Q Consensus 326 -------------------------------------------------------------------------------- 325 (448)
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ------------------------------ccceeEEEEE-------------c---CcchHHHHHHHHHhhC----CCC
Q psy1548 326 ------------------------------LHGLQQHYVK-------------L---KENEKNKKLFELLDVL----EFN 355 (448)
Q Consensus 326 ------------------------------~~~i~~~~~~-------------~---~~~~k~~~L~~ll~~~----~~~ 355 (448)
...+.+.+.. . ....|...|..++... +++
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~~~ 399 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNPET 399 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCTTC
T ss_pred hHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCCCC
Confidence 0000000000 0 1345777788887654 567
Q ss_pred eEEEEECccHHHHHHHHHHHhCC----CcEEEE--------eCCCCHHHHHHHHHHHhc-CCCceEEEEecChhhHHHHH
Q psy1548 356 QVVIFVKSVTRCIALSTLLSEQN----FPAVSI--------HRGMTQEERLKKYQEFKD-FHKGLAITFASDENDAKILN 422 (448)
Q Consensus 356 ~~IIF~~s~~~a~~l~~~L~~~g----~~~~~l--------h~~~~~~eR~~~l~~F~~-g~~g~~I~~~t~~~d~~~l~ 422 (448)
++||||+++..|+.+++.|++.| +++..+ ||+|++++|.+++++|++ |+. .|+++|+...+++
T Consensus 400 ~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g~~--~vLVaT~v~~~Gi-- 475 (696)
T 2ykg_A 400 ITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASGDH--NILIATSVADEGI-- 475 (696)
T ss_dssp CEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC-----------------------------CC--SCSEEEESSCCC---
T ss_pred cEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcCCc--cEEEEechhhcCC--
Confidence 99999999999999999999988 888888 559999999999999998 874 3455555434443
Q ss_pred HHHHHhcCCCCCCCccccccccccCC
Q psy1548 423 NVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 423 ~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++.+.--+-..++|.+...+.++.||
T Consensus 476 Dip~v~~VI~~d~p~s~~~~~Qr~GR 501 (696)
T 2ykg_A 476 DIAQCNLVILYEYVGNVIKMIQTRGR 501 (696)
T ss_dssp --CCCSEEEEESCC--CCCC------
T ss_pred cCccCCEEEEeCCCCCHHHHHHhhcc
Confidence 34333334556788888899999998
No 38
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.7e-33 Score=262.33 Aligned_cols=218 Identities=24% Similarity=0.406 Sum_probs=183.3
Q ss_pred cCceeeeccCCcccC----CCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceee
Q psy1548 71 KGAYVSIHSSGFRDF----LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146 (448)
Q Consensus 71 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~ 146 (448)
.+...+.+...|+++ ++++.+++.+.+.| |..|+++ |.+ +++.+
T Consensus 16 ~~~~~p~~~~~f~~l~~~~~l~~~l~~~l~~~g-----------------------~~~~~~~---Q~~------~i~~~ 63 (245)
T 3dkp_A 16 QGTDLPDPIATFQQLDQEYKINSRLLQNILDAG-----------------------FQMPTPI---QMQ------AIPVM 63 (245)
T ss_dssp ESSSCCCCCSSHHHHHHHHCCCHHHHHHHHHTT-----------------------CCSCCHH---HHH------HHHHH
T ss_pred cCCCCCCcccCHHHhhhccCCCHHHHHHHHHCC-----------------------CCCCCHH---HHH------HHHHH
Confidence 344455556678776 89999999999999 9999999 999 99999
Q ss_pred eeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhH
Q psy1548 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~ 225 (448)
+.|+|+++++|||+|||++|++|++..+... ..+.++||++||++|+.|+.+.++.+.... ++++..+.|+.......
T Consensus 64 ~~~~~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 142 (245)
T 3dkp_A 64 LHGRELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGT-GFRIHMIHKAAVAAKKF 142 (245)
T ss_dssp HTTCCEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTS-CCCEECCCHHHHHHTTT
T ss_pred hCCCCEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhccc-CceEEEEecCccHHHHh
Confidence 9999999999999999999999999988642 356689999999999999999999998877 78888777765433332
Q ss_pred HHHhcCCCcEEEEcHHHHHHHHHCC--CCcCCCeeEEEecchhHHHhh--hhhHHHHHHHHHhC-CCCCeEEEEeccCCc
Q psy1548 226 EYLKTHNPQIVVGTPGRILALVRNK--KLNLSLLKHFILDECDKMLEQ--LEMRRDVQEIFRSS-PHTKQVMMFSATLSK 300 (448)
Q Consensus 226 ~~l~~~~~~IlV~Tp~~l~~~l~~~--~~~~~~i~~lViDEah~l~~~--~~~~~~~~~i~~~l-~~~~q~i~~SAT~~~ 300 (448)
.......++|+|+||+++.+++... ...+.+++++|+||||++.++ .++...+..++..+ ++..|+++||||+++
T Consensus 143 ~~~~~~~~~I~v~Tp~~l~~~l~~~~~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 143 GPKSSKKFDILVTTPNRLIYLLKQDPPGIDLASVEWLVVDESDKLFEDGKTGFRDQLASIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp STTSCCCCCEEEECHHHHHHHHHSSSCSCCCTTCCEEEESSHHHHHHHC--CHHHHHHHHHHHCCCTTCEEEEEESSCCH
T ss_pred hhhhcCCCCEEEECHHHHHHHHHhCCCCcccccCcEEEEeChHHhcccccccHHHHHHHHHHhcCCCCcEEEEEeccCCH
Confidence 2223345899999999999999876 567899999999999999884 27888999888776 457899999999999
Q ss_pred cHHHHHHHhcCCCeEEEEcCc
Q psy1548 301 EIRPVCKKFMHDPMEVYVDDE 321 (448)
Q Consensus 301 ~~~~~~~~~l~~~~~i~~~~~ 321 (448)
++.++++.++.+|..+.+...
T Consensus 223 ~v~~~~~~~l~~p~~i~~~~~ 243 (245)
T 3dkp_A 223 DVEQWCKLNLDNVISVSIGAR 243 (245)
T ss_dssp HHHHHHHHHSSSCEEEEECC-
T ss_pred HHHHHHHHhCCCCEEEEeCCC
Confidence 999999999999999887654
No 39
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=4.2e-33 Score=290.74 Aligned_cols=306 Identities=18% Similarity=0.206 Sum_probs=198.4
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHHHHhhcc
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEYERFSKY 206 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~~~ 206 (448)
.++||.+ +++.++.|+++++++|||+|||++|++|+++.+..... +.++||++||++|+.|+.+.++++...
T Consensus 5 ~~~~Q~~------~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 5 PRNYQLE------LALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCHHHHH------HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CcHHHHH------HHHHHhCCCCEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4555999 99999999999999999999999999999998866542 568999999999999999999999887
Q ss_pred CCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-cCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-NLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 207 ~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
. ++++..++|+.....+...+..+ ++|+|+||+++.+++..+.+ .+.+++++|+||||++.+...+...+...+...
T Consensus 79 ~-~~~~~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~ 156 (555)
T 3tbk_A 79 L-GYNIASISGATSDSVSVQHIIED-NDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHK 156 (555)
T ss_dssp T-TCCEEEECTTTGGGSCHHHHHHH-CSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHH
T ss_pred C-CcEEEEEcCCCcchhhHHHHhcC-CCEEEECHHHHHHHHhcCcccccccCCEEEEECccccCCcchHHHHHHHHHHhh
Confidence 7 89999999998776665555554 89999999999999988777 789999999999999987623333333333332
Q ss_pred -----CCCCeEEEEeccCCcc-----------HHHHHHHhcCCCeEEEEcCcc------cccccceeEEEEE--------
Q psy1548 286 -----PHTKQVMMFSATLSKE-----------IRPVCKKFMHDPMEVYVDDEA------KLTLHGLQQHYVK-------- 335 (448)
Q Consensus 286 -----~~~~q~i~~SAT~~~~-----------~~~~~~~~l~~~~~i~~~~~~------~~~~~~i~~~~~~-------- 335 (448)
.+..|++++|||++.. +..+.. .+..+. +...... .............
T Consensus 157 ~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~-~l~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 234 (555)
T 3tbk_A 157 LGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCA-ALDASV-IATVRDNVAELEQVVYKPQKISRKVASRTSNTFK 234 (555)
T ss_dssp TSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHH-HTTCSE-EECCCSCHHHHHTTCCCCCEEEEECCCCSCCHHH
T ss_pred hccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHH-hcCCee-eeccccCHHHHHhhcCCCceEEEEecCcccChHH
Confidence 2557999999998542 111111 111111 1110000 0000000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1548 336 -------------------------------------------------------------------------------- 335 (448)
Q Consensus 336 -------------------------------------------------------------------------------- 335 (448)
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 314 (555)
T 3tbk_A 235 CIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKYNDAL 314 (555)
T ss_dssp HHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence
Q ss_pred ----------------------------------------------------cCcchHHHHHHHHHhh----CCCCeEEE
Q psy1548 336 ----------------------------------------------------LKENEKNKKLFELLDV----LEFNQVVI 359 (448)
Q Consensus 336 ----------------------------------------------------~~~~~k~~~L~~ll~~----~~~~~~II 359 (448)
.....|...|.+++.. ...+++||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lV 394 (555)
T 3tbk_A 315 IISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKPETKTIL 394 (555)
T ss_dssp HHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCTTCCEEE
T ss_pred hhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCCCceEEE
Confidence 0013466666666654 35689999
Q ss_pred EECccHHHHHHHHHHHhCC------------CcEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEEecChhhHHHHHHHHH
Q psy1548 360 FVKSVTRCIALSTLLSEQN------------FPAVSIHRGMTQEERLKKYQEFKD-FHKGLAITFASDENDAKILNNVQD 426 (448)
Q Consensus 360 F~~s~~~a~~l~~~L~~~g------------~~~~~lh~~~~~~eR~~~l~~F~~-g~~g~~I~~~t~~~d~~~l~~i~~ 426 (448)
||+++..++.++..|++.| .....+||+|++++|.++++.|++ |+. .|+++|+...+++ ++..
T Consensus 395 F~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~--~vLvaT~~~~~Gl--Dlp~ 470 (555)
T 3tbk_A 395 FVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDN--NILIATSVADEGI--DIAE 470 (555)
T ss_dssp ECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CC--SEEEECCCTTCCE--ETTS
T ss_pred EeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCe--eEEEEcchhhcCC--cccc
Confidence 9999999999999999863 345556679999999999999999 773 5667776543333 3333
Q ss_pred HhcCCCCCCCccccccccccCC
Q psy1548 427 RFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 427 ~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.-.+-..++|.+...+.++.||
T Consensus 471 v~~VI~~d~p~s~~~~~Qr~GR 492 (555)
T 3tbk_A 471 CNLVILYEYVGNVIKMIQTRGR 492 (555)
T ss_dssp CSEEEEESCCSSCCCEECSSCC
T ss_pred CCEEEEeCCCCCHHHHHHhcCc
Confidence 3335566778899999999998
No 40
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=8.9e-33 Score=304.32 Aligned_cols=263 Identities=20% Similarity=0.201 Sum_probs=206.9
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|..+++||.+ +++.+..|+++++++|||+|||++|.+|++..+.. +.++||++|+++|+.|+++.+..+..
T Consensus 84 ~f~L~~~Q~e------ai~~l~~g~~vLV~apTGSGKTlva~lai~~~l~~---g~rvL~l~PtkaLa~Q~~~~l~~~~~ 154 (1010)
T 2xgj_A 84 PFTLDPFQDT------AISCIDRGESVLVSAHTSAGKTVVAEYAIAQSLKN---KQRVIYTSPIKALSNQKYRELLAEFG 154 (1010)
T ss_dssp SSCCCHHHHH------HHHHHHHTCEEEEECCTTSCHHHHHHHHHHHHHHT---TCEEEEEESSHHHHHHHHHHHHHHHS
T ss_pred CCCCCHHHHH------HHHHHHcCCCEEEECCCCCChHHHHHHHHHHHhcc---CCeEEEECChHHHHHHHHHHHHHHhC
Confidence 3345556999 99999999999999999999999999999887743 45899999999999999999998763
Q ss_pred cCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 206 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
+++.++|+..... .++|+|+||++|.+++.++...+.+++++||||||++.++ ++...+..++..+
T Consensus 155 -----~vglltGd~~~~~--------~~~IvV~Tpe~L~~~L~~~~~~l~~l~lVViDEaH~l~d~-~rg~~~e~il~~l 220 (1010)
T 2xgj_A 155 -----DVGLMTGDITINP--------DAGCLVMTTEILRSMLYRGSEVMREVAWVIFDEVHYMRDK-ERGVVWEETIILL 220 (1010)
T ss_dssp -----CEEEECSSCEECT--------TCSEEEEEHHHHHHHHHHTCTTGGGEEEEEEETGGGGGCT-TTHHHHHHHHHHS
T ss_pred -----CEEEEeCCCccCC--------CCCEEEEcHHHHHHHHHcCcchhhcCCEEEEechhhhccc-chhHHHHHHHHhc
Confidence 6788888876542 3789999999999999887778899999999999999987 8888999999999
Q ss_pred CCCCeEEEEeccCCccH--HHHHHHhcCCCeEEEEcCcccccccceeEEEEEcC---------c----------------
Q psy1548 286 PHTKQVMMFSATLSKEI--RPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLK---------E---------------- 338 (448)
Q Consensus 286 ~~~~q~i~~SAT~~~~~--~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~---------~---------------- 338 (448)
++..|++++|||+++.. ..++......+..+..... .+..+.++++... .
T Consensus 221 ~~~~~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~~~---rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 297 (1010)
T 2xgj_A 221 PDKVRYVFLSATIPNAMEFAEWICKIHSQPCHIVYTNF---RPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASI 297 (1010)
T ss_dssp CTTCEEEEEECCCTTHHHHHHHHHHHHTSCEEEEEECC---CSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTC
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHhhcCCCeEEEecCC---CcccceEEEEecCCcceeeeeccccccchHHHHHHHHHH
Confidence 99999999999998752 2334444455666554433 1233444443311 0
Q ss_pred ------------------------------chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCc--------
Q psy1548 339 ------------------------------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP-------- 380 (448)
Q Consensus 339 ------------------------------~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~-------- 380 (448)
......+...+......++||||+++..|+.++..|.+.++.
T Consensus 298 ~~~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i 377 (1010)
T 2xgj_A 298 SNQIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEAL 377 (1010)
T ss_dssp C------------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHH
T ss_pred hhhhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHH
Confidence 111223444444445568999999999999999999875543
Q ss_pred -------------------------------EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 381 -------------------------------AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 381 -------------------------------~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
+..+||+|++.+|..+++.|++|. +.|+++|+..
T Consensus 378 ~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G~--ikVLVAT~~l 442 (1010)
T 2xgj_A 378 TKIFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEGF--LKVLFATETF 442 (1010)
T ss_dssp HHHHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTTC--CSEEEEEGGG
T ss_pred HHHHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcCC--CcEEEEehHh
Confidence 789999999999999999999987 5677777653
No 41
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=5.2e-33 Score=298.48 Aligned_cols=282 Identities=15% Similarity=0.161 Sum_probs=215.2
Q ss_pred CcccCC--CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 81 GFRDFL--LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 81 ~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
.|++++ +++.+.+++.+.| |..|+++ |.+ +++.+..|+++++++||
T Consensus 2 ~f~~l~~~l~~~~~~~l~~~g-----------------------~~~l~~~---Q~~------~i~~i~~~~~~lv~apT 49 (702)
T 2p6r_A 2 KVEELAESISSYAVGILKEEG-----------------------IEELFPP---QAE------AVEKVFSGKNLLLAMPT 49 (702)
T ss_dssp CSHHHHHHHHHHHHHHHHCC--------------------------CCCCC---CHH------HHHHHTTCSCEEEECSS
T ss_pred chhhhhhccCHHHHHHHHhCC-----------------------CCCCCHH---HHH------HHHHHhCCCcEEEEcCC
Confidence 577888 9999999999999 9999999 999 99999999999999999
Q ss_pred CChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEE
Q psy1548 159 GMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVG 238 (448)
Q Consensus 159 GsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~ 238 (448)
|||||++|.+|++..+.. +.+++|++|+++|+.|+.+.++.+.. . +++++.++|+....... + +.++|+|+
T Consensus 50 GsGKT~~~~l~il~~~~~---~~~~l~i~P~r~La~q~~~~~~~~~~-~-g~~v~~~~G~~~~~~~~--~--~~~~Iiv~ 120 (702)
T 2p6r_A 50 AAGKTLLAEMAMVREAIK---GGKSLYVVPLRALAGEKYESFKKWEK-I-GLRIGISTGDYESRDEH--L--GDCDIIVT 120 (702)
T ss_dssp HHHHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHTTTTT-T-TCCEEEECSSCBCCSSC--S--TTCSEEEE
T ss_pred ccHHHHHHHHHHHHHHHh---CCcEEEEeCcHHHHHHHHHHHHHHHh-c-CCEEEEEeCCCCcchhh--c--cCCCEEEE
Confidence 999999999999987653 45899999999999999999865543 3 78999999987654431 1 24899999
Q ss_pred cHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC---CCCCeEEEEeccCCccHHHHHHHhcCCCeE
Q psy1548 239 TPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS---PHTKQVMMFSATLSKEIRPVCKKFMHDPME 315 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l---~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~ 315 (448)
||+++..++.+....+++++++|+||+|.+.++ ++...+..++..+ .+..|++++|||+++ ..++..++ ..+.
T Consensus 121 Tpe~l~~~l~~~~~~l~~~~~vIiDE~H~l~~~-~r~~~~~~ll~~l~~~~~~~~ii~lSATl~n-~~~~~~~l-~~~~- 196 (702)
T 2p6r_A 121 TSEKADSLIRNRASWIKAVSCLVVDEIHLLDSE-KRGATLEILVTKMRRMNKALRVIGLSATAPN-VTEIAEWL-DADY- 196 (702)
T ss_dssp EHHHHHHHHHTTCSGGGGCCEEEETTGGGGGCT-TTHHHHHHHHHHHHHHCTTCEEEEEECCCTT-HHHHHHHT-TCEE-
T ss_pred CHHHHHHHHHcChhHHhhcCEEEEeeeeecCCC-CcccHHHHHHHHHHhcCcCceEEEECCCcCC-HHHHHHHh-CCCc-
Confidence 999999999987777899999999999999886 7777777766554 578999999999986 45555544 3221
Q ss_pred EEEcCcccccccceeEEEE------EcCc-------chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhC-----
Q psy1548 316 VYVDDEAKLTLHGLQQHYV------KLKE-------NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQ----- 377 (448)
Q Consensus 316 i~~~~~~~~~~~~i~~~~~------~~~~-------~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~----- 377 (448)
+.... .+..+...+. .... ..+...+.+.+. .++++||||++++.|+.++..|.+.
T Consensus 197 ~~~~~----r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~ 270 (702)
T 2p6r_A 197 YVSDW----RPVPLVEGVLCEGTLELFDGAFSTSRRVKFEELVEECVA--ENGGVLVFESTRRGAEKTAVKLSAITAKYV 270 (702)
T ss_dssp EECCC----CSSCEEEEEECSSEEEEEETTEEEEEECCHHHHHHHHHH--TTCCEEEECSSHHHHHHHHHHHHHHHHTTC
T ss_pred ccCCC----CCccceEEEeeCCeeeccCcchhhhhhhhHHHHHHHHHh--cCCCEEEEcCCHHHHHHHHHHHHHHHHhhc
Confidence 11111 1111221111 0111 115566666654 4679999999999999999998753
Q ss_pred -------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 378 -------------------------NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 378 -------------------------g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+..+.++||+|++++|..+++.|++|+ +.|.++|+.
T Consensus 271 ~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~l~~~~R~~v~~~f~~g~--~~vlvaT~~ 331 (702)
T 2p6r_A 271 ENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGN--IKVVVATPT 331 (702)
T ss_dssp CCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTTSCHHHHHHHHHHHHTTS--CCEEEECST
T ss_pred ChHHHHHHHHhhccccccHHHHHHHhcCeEEecCCCCHHHHHHHHHHHHCCC--CeEEEECcH
Confidence 235788999999999999999999987 466666664
No 42
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=99.98 E-value=2e-32 Score=297.73 Aligned_cols=311 Identities=18% Similarity=0.199 Sum_probs=191.7
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~ 200 (448)
+..|+++ |.+ +++.++.|+++++++|||+|||++|++|++..+...+. +.++|||+|+++|+.|+.+.+
T Consensus 246 ~~~l~~~---Q~~------~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~ 316 (797)
T 4a2q_A 246 TKKARSY---QIE------LAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 316 (797)
T ss_dssp --CCCHH---HHH------HHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHH---HHH------HHHHHHhCCCEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 5556665 999 99999999999999999999999999999998866532 568999999999999999999
Q ss_pred HHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-cCCCeeEEEecchhHHHhhhhhHHHHH
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-NLSLLKHFILDECDKMLEQLEMRRDVQ 279 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~~~ 279 (448)
+++.... ++++..++|+.....+...+..+ ++|+|+||+++.+.+..+.+ .+.++++||+||||++.....+...+.
T Consensus 317 ~~~~~~~-~~~v~~~~g~~~~~~~~~~~~~~-~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp HHHHGGG-TCCEEEECCC-----CHHHHHHT-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred HHhcccC-CceEEEEeCCcchhhhHHHhhCC-CCEEEEchHHHHHHHHhccccccccCCEEEEECccccCCCccHHHHHH
Confidence 9998877 89999999998776666666554 89999999999999988777 789999999999999877523333333
Q ss_pred HHHHh----CCCCCeEEEEeccCCc-----------cHHHHHH------------------HhcCCCeEEEEcCcccccc
Q psy1548 280 EIFRS----SPHTKQVMMFSATLSK-----------EIRPVCK------------------KFMHDPMEVYVDDEAKLTL 326 (448)
Q Consensus 280 ~i~~~----l~~~~q~i~~SAT~~~-----------~~~~~~~------------------~~l~~~~~i~~~~~~~~~~ 326 (448)
.++.. ..+..|++++|||++. .+..++. .++..|.............
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 474 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCCSCC
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHHhcCCCceEEEecCCCCCc
Confidence 33332 2556899999999852 1222221 1222222111100000000
Q ss_pred c-----------------------c---eeEEEE-------E--------------------------------------
Q psy1548 327 H-----------------------G---LQQHYV-------K-------------------------------------- 335 (448)
Q Consensus 327 ~-----------------------~---i~~~~~-------~-------------------------------------- 335 (448)
. . +....+ +
T Consensus 475 ~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~ 554 (797)
T 4a2q_A 475 PFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554 (797)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 0 0 000000 0
Q ss_pred ------------------------------------------------------cCcchHHHHHHHHHhh----CCCCeE
Q psy1548 336 ------------------------------------------------------LKENEKNKKLFELLDV----LEFNQV 357 (448)
Q Consensus 336 ------------------------------------------------------~~~~~k~~~L~~ll~~----~~~~~~ 357 (448)
.....|...|..++.. ..+.++
T Consensus 555 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~kv 634 (797)
T 4a2q_A 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 634 (797)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSCCE
T ss_pred HHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCCeE
Confidence 0013366666666654 456899
Q ss_pred EEEECccHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEEecChhhHHHHHHH
Q psy1548 358 VIFVKSVTRCIALSTLLSEQ------------NFPAVSIHRGMTQEERLKKYQEFKD-FHKGLAITFASDENDAKILNNV 424 (448)
Q Consensus 358 IIF~~s~~~a~~l~~~L~~~------------g~~~~~lh~~~~~~eR~~~l~~F~~-g~~g~~I~~~t~~~d~~~l~~i 424 (448)
||||+++..++.++..|++. |..+..+||+|++.+|.++++.|++ |+ +.|+++|+....++ ++
T Consensus 635 LIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~--~~vLVaT~~~~~GI--Dl 710 (797)
T 4a2q_A 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVADEGI--DI 710 (797)
T ss_dssp EEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------C--CSEEEEECC---------
T ss_pred EEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCC--ceEEEEcCchhcCC--Cc
Confidence 99999999999999999873 6667788999999999999999999 77 45778887655555 55
Q ss_pred HHHhcCCCCCCCccccccccccCC
Q psy1548 425 QDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
...-.+-..+.|.+...+.++.||
T Consensus 711 p~v~~VI~yd~p~s~~~~iQr~GR 734 (797)
T 4a2q_A 711 VQCNLVVLYEYSGNVTKMIQVRGR 734 (797)
T ss_dssp CCCSEEEEESCCSCHHHHHTC---
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC
Confidence 555556667788888888899988
No 43
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=99.98 E-value=3.4e-32 Score=299.67 Aligned_cols=264 Identities=16% Similarity=0.189 Sum_probs=208.0
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..++++|.+ +++.++.|+++++++|||+|||++|++|+...+. .+.++||++|+++|+.|+++.+..+.
T Consensus 36 ~~f~l~~~Q~~------aI~~il~g~~vlv~apTGsGKTlv~~~~i~~~~~---~g~~vlvl~PtraLa~Q~~~~l~~~~ 106 (997)
T 4a4z_A 36 WPFELDTFQKE------AVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMAHR---NMTKTIYTSPIKALSNQKFRDFKETF 106 (997)
T ss_dssp CSSCCCHHHHH------HHHHHHTTCEEEEECCTTSCSHHHHHHHHHHHHH---TTCEEEEEESCGGGHHHHHHHHHTTC
T ss_pred CCCCCCHHHHH------HHHHHHcCCCEEEEECCCCcHHHHHHHHHHHHHh---cCCeEEEEeCCHHHHHHHHHHHHHHc
Confidence 44556777999 9999999999999999999999999999887653 34589999999999999998888765
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS 284 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~ 284 (448)
. +++++.++|+..... .++|+|+||++|.+++......+.++++||+||||++.++ ++...+..++..
T Consensus 107 ~---~~~v~~l~G~~~~~~--------~~~IlV~Tpe~L~~~l~~~~~~l~~l~lvViDEaH~l~d~-~~g~~~e~ii~~ 174 (997)
T 4a4z_A 107 D---DVNIGLITGDVQINP--------DANCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYVNDQ-DRGVVWEEVIIM 174 (997)
T ss_dssp -----CCEEEECSSCEECT--------TSSEEEEEHHHHHHHHHHTCSGGGGEEEEEECCTTCCCTT-CTTCCHHHHHHH
T ss_pred C---CCeEEEEeCCCccCC--------CCCEEEECHHHHHHHHHhCchhhcCCCEEEEECccccccc-chHHHHHHHHHh
Confidence 3 678899999876432 3799999999999999887777899999999999999998 899999999999
Q ss_pred CCCCCeEEEEeccCCccHHHHHHHhc---CCCeEEEEcCcccccccceeEEE----------------------------
Q psy1548 285 SPHTKQVMMFSATLSKEIRPVCKKFM---HDPMEVYVDDEAKLTLHGLQQHY---------------------------- 333 (448)
Q Consensus 285 l~~~~q~i~~SAT~~~~~~~~~~~~l---~~~~~i~~~~~~~~~~~~i~~~~---------------------------- 333 (448)
+++..|++++|||+++.. ++..++. ..+..+..... .+..+.+++
T Consensus 175 l~~~v~iIlLSAT~~n~~-ef~~~l~~~~~~~~~vi~~~~---r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l 250 (997)
T 4a4z_A 175 LPQHVKFILLSATVPNTY-EFANWIGRTKQKNIYVISTPK---RPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEIL 250 (997)
T ss_dssp SCTTCEEEEEECCCTTHH-HHHHHHHHHHTCCEEEEECSS---CSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHH
T ss_pred cccCCCEEEEcCCCCChH-HHHHHHhcccCCceEEEecCC---CCccceEEEecCCcchhcccchhhhhHHHHHHHHHHh
Confidence 999999999999998653 4444432 12222222111 011111111
Q ss_pred -----------------------------------------------------------------EEcCcchHHHHHHHH
Q psy1548 334 -----------------------------------------------------------------VKLKENEKNKKLFEL 348 (448)
Q Consensus 334 -----------------------------------------------------------------~~~~~~~k~~~L~~l 348 (448)
.......+...+...
T Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~ 330 (997)
T 4a4z_A 251 NGESAKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTWPEIVNY 330 (997)
T ss_dssp C-----------------------------------------------------------------CCCCTTHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHHHHHHHH
Confidence 111233456677778
Q ss_pred HhhCCCCeEEEEECccHHHHHHHHHHHhCCC---------------------------------------cEEEEeCCCC
Q psy1548 349 LDVLEFNQVVIFVKSVTRCIALSTLLSEQNF---------------------------------------PAVSIHRGMT 389 (448)
Q Consensus 349 l~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~---------------------------------------~~~~lh~~~~ 389 (448)
+......++||||++++.|+.++..|.+.|+ .+..+||+|+
T Consensus 331 l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~ 410 (997)
T 4a4z_A 331 LRKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLL 410 (997)
T ss_dssp HHHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSC
T ss_pred HHhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCC
Confidence 8877778999999999999999999987766 4799999999
Q ss_pred HHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 390 QEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 390 ~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+.+|..+++.|++|. +.|+|+|..
T Consensus 411 ~~~R~~v~~~F~~G~--~kVLvAT~~ 434 (997)
T 4a4z_A 411 PIVKELIEILFSKGF--IKVLFATET 434 (997)
T ss_dssp HHHHHHHHHHHHTTC--CSEEEECTH
T ss_pred HHHHHHHHHHHHCCC--CcEEEEchH
Confidence 999999999999988 577888774
No 44
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=1.5e-32 Score=304.83 Aligned_cols=255 Identities=16% Similarity=0.203 Sum_probs=206.1
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
| .|+++ |++ ++|.++.|+|++++||||||||++|++|++..+ ..++++||++||++|+.|+.+.++.
T Consensus 77 f-~pt~i---Q~~------ai~~il~g~dvlv~ApTGSGKTl~~l~~il~~~---~~~~~~Lil~PtreLa~Q~~~~l~~ 143 (1104)
T 4ddu_A 77 K-DLTGY---QRL------WAKRIVQGKSFTMVAPTGVGKTTFGMMTALWLA---RKGKKSALVFPTVTLVKQTLERLQK 143 (1104)
T ss_dssp S-CCCHH---HHH------HHHHHTTTCCEEECCSTTCCHHHHHHHHHHHHH---TTTCCEEEEESSHHHHHHHHHHHHT
T ss_pred C-CCCHH---HHH------HHHHHHcCCCEEEEeCCCCcHHHHHHHHHHHHH---hcCCeEEEEechHHHHHHHHHHHHH
Confidence 5 58888 999 999999999999999999999999888888776 3456899999999999999999999
Q ss_pred hhccCCCceEEEEEcCccc---HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHH----------
Q psy1548 203 FSKYMSNIKVGVFFGGLPI---QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKML---------- 269 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~---~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~---------- 269 (448)
+. .. ++++..++|+.+. ..+...+..+.++|+|+||++|.+++.. +.+.++++||+||||++.
T Consensus 144 l~-~~-~i~v~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~l~~--l~~~~l~~lViDEaH~l~~~~r~~Dr~L 219 (1104)
T 4ddu_A 144 LA-DE-KVKIFGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKNREK--LSQKRFDFVFVDDVDAVLKASRNIDTLL 219 (1104)
T ss_dssp TS-CT-TSCEEEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHSHHH--HHTSCCSEEEESCHHHHTTSSHHHHHHH
T ss_pred hh-CC-CCeEEEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHHHHh--hcccCcCEEEEeCCCccccccccchhhh
Confidence 77 44 8999999999987 5666777776799999999999887764 667899999999997654
Q ss_pred h-hhhhHHH-HHHHHHhCC-----------CCCeEEEEecc-CCccHH-HHHHHhcCCCeEEEEcCcccccccceeEEEE
Q psy1548 270 E-QLEMRRD-VQEIFRSSP-----------HTKQVMMFSAT-LSKEIR-PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYV 334 (448)
Q Consensus 270 ~-~~~~~~~-~~~i~~~l~-----------~~~q~i~~SAT-~~~~~~-~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~ 334 (448)
+ + +|... +..+++.++ ...|+++|||| .|..+. .+...++. +.+... .....++.+.+.
T Consensus 220 ~~~-gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~----i~v~~~-~~~~~~i~~~~~ 293 (1104)
T 4ddu_A 220 MMV-GIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLN----FTVGRL-VSVARNITHVRI 293 (1104)
T ss_dssp HTS-SCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTC----CCCCBC-CCCCCCEEEEEE
T ss_pred Hhc-CCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhccee----EEeccC-CCCcCCceeEEE
Confidence 4 5 77777 888888877 78999999999 565554 23444433 222222 345667888877
Q ss_pred EcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEE-EEeCCCCHHHHHHHHHHHhcCCCceEEEEe
Q psy1548 335 KLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV-SIHRGMTQEERLKKYQEFKDFHKGLAITFA 412 (448)
Q Consensus 335 ~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~-~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~ 412 (448)
.+ +|...|..++... ++++||||++++.|+.++..|++.|+++. .+||. |.+ ++.|++|+. .|+++
T Consensus 294 ~~---~k~~~L~~ll~~~-~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg~-----rr~-l~~F~~G~~--~VLVa 360 (1104)
T 4ddu_A 294 SS---RSKEKLVELLEIF-RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF-----EKN-FEDFKVGKI--NILIG 360 (1104)
T ss_dssp SC---CCHHHHHHHHHHH-CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSSH-----HHH-HHHHHHTSC--SEEEE
T ss_pred ec---CHHHHHHHHHHhc-CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecCc-----HHH-HHHHHCCCC--CEEEE
Confidence 66 3556667777663 47999999999999999999999999998 99992 555 999999984 55666
No 45
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=99.97 E-value=2.9e-31 Score=271.31 Aligned_cols=304 Identities=16% Similarity=0.180 Sum_probs=214.7
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
.+++||.+ +++.++.+ ++++.+|||+|||++++++++..+. ..+.++||++|+++|+.|+.+.+.++.+..
T Consensus 9 ~l~~~Q~~------~i~~~~~~-~~ll~~~tG~GKT~~~~~~~~~~~~--~~~~~~liv~P~~~L~~q~~~~~~~~~~~~ 79 (494)
T 1wp9_A 9 QPRIYQEV------IYAKCKET-NCLIVLPTGLGKTLIAMMIAEYRLT--KYGGKVLMLAPTKPLVLQHAESFRRLFNLP 79 (494)
T ss_dssp CCCHHHHH------HHHHGGGS-CEEEECCTTSCHHHHHHHHHHHHHH--HSCSCEEEECSSHHHHHHHHHHHHHHBCSC
T ss_pred CccHHHHH------HHHHHhhC-CEEEEcCCCCCHHHHHHHHHHHHHh--cCCCeEEEEECCHHHHHHHHHHHHHHhCcc
Confidence 34666999 99999988 9999999999999999999988765 234589999999999999999999987543
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
..++..+.|+............ ++|+|+||+.+...+..+.+.+.+++++|+||||++.+. .....+...+....+
T Consensus 80 -~~~v~~~~g~~~~~~~~~~~~~--~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~-~~~~~~~~~~~~~~~ 155 (494)
T 1wp9_A 80 -PEKIVALTGEKSPEERSKAWAR--AKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGN-YAYVFIAREYKRQAK 155 (494)
T ss_dssp -GGGEEEECSCSCHHHHHHHHHH--CSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTT-CHHHHHHHHHHHHCS
T ss_pred -hhheEEeeCCcchhhhhhhccC--CCEEEecHHHHHHHHhcCCcchhhceEEEEECCcccCCC-CcHHHHHHHHHhcCC
Confidence 5688899988775544333332 799999999999999888888899999999999998765 444455555555567
Q ss_pred CCeEEEEeccCCcc---HHHHHHHhcCCCeEEEEcCcccc----cccceeEEEEE-------------------------
Q psy1548 288 TKQVMMFSATLSKE---IRPVCKKFMHDPMEVYVDDEAKL----TLHGLQQHYVK------------------------- 335 (448)
Q Consensus 288 ~~q~i~~SAT~~~~---~~~~~~~~l~~~~~i~~~~~~~~----~~~~i~~~~~~------------------------- 335 (448)
..+++++|||+... +..+...+...+..+........ ...........
T Consensus 156 ~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (494)
T 1wp9_A 156 NPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLAE 235 (494)
T ss_dssp SCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78999999999754 33344333222111111000000 00000000000
Q ss_pred --------------------------------------------------------------------------------
Q psy1548 336 -------------------------------------------------------------------------------- 335 (448)
Q Consensus 336 -------------------------------------------------------------------------------- 335 (448)
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (494)
T 1wp9_A 236 TGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTKA 315 (494)
T ss_dssp HTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCHH
T ss_pred hccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccchh
Confidence
Q ss_pred -----------------------cCcchHHHHHHHHHhh----CCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC--
Q psy1548 336 -----------------------LKENEKNKKLFELLDV----LEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR-- 386 (448)
Q Consensus 336 -----------------------~~~~~k~~~L~~ll~~----~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~-- 386 (448)
.....|...+.+++.. ..++++||||+++..++.+++.|++.|+++..+||
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~ 395 (494)
T 1wp9_A 316 SKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQA 395 (494)
T ss_dssp HHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCSS
T ss_pred hhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEeccc
Confidence 0233466777777766 46789999999999999999999999999999999
Q ss_pred ------CCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 387 ------GMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 387 ------~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+|+..+|.++++.|++|+ ..|+++|+....++ ++...-.+-..+.|.+...+.++.||
T Consensus 396 ~~~~~~~~~~~~r~~~~~~F~~~~--~~vLv~T~~~~~Gl--dl~~~~~Vi~~d~~~~~~~~~Qr~GR 459 (494)
T 1wp9_A 396 SKENDRGLSQREQKLILDEFARGE--FNVLVATSVGEEGL--DVPEVDLVVFYEPVPSAIRSIQRRGR 459 (494)
T ss_dssp CC-------CCHHHHHHHHHHHTS--CSEEEECGGGGGGG--GSTTCCEEEESSCCHHHHHHHHHHTT
T ss_pred cccccccCCHHHHHHHHHHHhcCC--ceEEEECCccccCC--CchhCCEEEEeCCCCCHHHHHHHHhh
Confidence 999999999999999988 45666665433332 23222223344556556666777776
No 46
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.97 E-value=3.7e-32 Score=286.33 Aligned_cols=301 Identities=19% Similarity=0.220 Sum_probs=223.4
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
| .|+++ |.. ++|.++.|+ |..++||+|||++|.+|++..... +..++||+||++||.|+.+++..
T Consensus 82 ~-~pt~V---Q~~------~ip~ll~G~--Iaea~TGeGKTlaf~LP~~l~aL~---g~~vlVltptreLA~qd~e~~~~ 146 (844)
T 1tf5_A 82 M-FPFKV---QLM------GGVALHDGN--IAEMKTGEGKTLTSTLPVYLNALT---GKGVHVVTVNEYLASRDAEQMGK 146 (844)
T ss_dssp C-CCCHH---HHH------HHHHHHTTS--EEECCTTSCHHHHHHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHH
T ss_pred C-CCcHH---HHH------hhHHHhCCC--EEEccCCcHHHHHHHHHHHHHHHc---CCCEEEEeCCHHHHHHHHHHHHH
Confidence 8 99999 999 999999999 999999999999999999854332 45799999999999999999999
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHH-hh---
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKML-EQ--- 271 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~-~~--- 271 (448)
+...+ ++++++++||.+...+... . .++|+||||++| .+++... .+.++.+.++|+||||.|+ +.
T Consensus 147 l~~~l-gl~v~~i~gg~~~~~r~~~--~-~~dIv~gTpgrlgfD~L~D~m~~~~~~l~lr~~~~lVlDEaD~mLiDea~t 222 (844)
T 1tf5_A 147 IFEFL-GLTVGLNLNSMSKDEKREA--Y-AADITYSTNNELGFDYLRDNMVLYKEQMVQRPLHFAVIDEVDSILIDEART 222 (844)
T ss_dssp HHHHT-TCCEEECCTTSCHHHHHHH--H-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEEETHHHHHTTTTTC
T ss_pred HHhhc-CCeEEEEeCCCCHHHHHHh--c-CCCEEEECchhhhHHHHHHhhhcchhhhcccCCCEEEECchhhhhhhcccc
Confidence 99998 9999999999875544333 2 389999999999 6666532 3567899999999999998 43
Q ss_pred -----------hhhHHHHHHHHHhCC---------CCCeEE-----------------EEeccCCcc---HHHHH--HHh
Q psy1548 272 -----------LEMRRDVQEIFRSSP---------HTKQVM-----------------MFSATLSKE---IRPVC--KKF 309 (448)
Q Consensus 272 -----------~~~~~~~~~i~~~l~---------~~~q~i-----------------~~SAT~~~~---~~~~~--~~~ 309 (448)
.+|...+..++..++ +.+|++ ++|||++.. +...+ ..+
T Consensus 223 plIisg~~~~~~~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l 302 (844)
T 1tf5_A 223 PLIISGQAAKSTKLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVA 302 (844)
T ss_dssp EEEEEEEEECCCHHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHT
T ss_pred chhhcCCcccchhHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHH
Confidence 037889999999997 367887 899998643 32222 222
Q ss_pred cC-CC--e-----EEEEcCcc----------------------------ccccccee-----------------------
Q psy1548 310 MH-DP--M-----EVYVDDEA----------------------------KLTLHGLQ----------------------- 330 (448)
Q Consensus 310 l~-~~--~-----~i~~~~~~----------------------------~~~~~~i~----------------------- 330 (448)
+. ++ + .+.++... ..+..++.
T Consensus 303 ~~~d~dYiv~dg~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~y~kl~GmTGTa~te~~ 382 (844)
T 1tf5_A 303 MQKDVDYVVEDGQVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRMYEKLAGMTGTAKTEEE 382 (844)
T ss_dssp CCBTTTEEEETTEEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcCCceEEecCeeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHHHhhhccCCcccchhHH
Confidence 22 11 1 11111000 00000111
Q ss_pred ------------------------EEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEE
Q psy1548 331 ------------------------QHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384 (448)
Q Consensus 331 ------------------------~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~l 384 (448)
+.++.+...+|...+...+... .+.++||||+|++.++.|+..|++.|+++..+
T Consensus 383 e~~~iY~l~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vL 462 (844)
T 1tf5_A 383 EFRNIYNMQVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRYMTGQPVLVGTVAVETSELISKLLKNKGIPHQVL 462 (844)
T ss_dssp HHHHHHCCCEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEE
T ss_pred HHHHHhCCceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 1245566778999998887642 45689999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHH--------HHhcCCCCCCCccccccccccCC
Q psy1548 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQ--------DRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 385 h~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~--------~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
||++.+.+|..+.+.|+. | .|+++|+-.-+++ +|. ..+.+-..++|.+...+.++.||
T Consensus 463 hg~~~~rEr~ii~~ag~~---g-~VlIATdmAgRG~--DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GR 528 (844)
T 1tf5_A 463 NAKNHEREAQIIEEAGQK---G-AVTIATNMAGRGT--DIKLGEGVKELGGLAVVGTERHESRRIDNQLRGR 528 (844)
T ss_dssp CSSCHHHHHHHHTTTTST---T-CEEEEETTSSTTC--CCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTT
T ss_pred eCCccHHHHHHHHHcCCC---C-eEEEeCCccccCc--CccccchhhhcCCcEEEEecCCCCHHHHHhhcCc
Confidence 999988888766655544 3 5788887443332 333 33456677889988888888887
No 47
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=99.97 E-value=2.1e-31 Score=293.16 Aligned_cols=311 Identities=18% Similarity=0.204 Sum_probs=189.9
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEY 200 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~ 200 (448)
+..|+++ |.+ +++.++.|+++++++|||+|||++|++|++..+..... +.++|||+|+++|+.|+.+.+
T Consensus 246 ~~~~r~~---Q~~------ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~ 316 (936)
T 4a2w_A 246 TKKARSY---QIE------LAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVF 316 (936)
T ss_dssp --CCCHH---HHH------HHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHH
T ss_pred CCCCCHH---HHH------HHHHHHcCCCEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHH
Confidence 4455555 999 99999999999999999999999999999988765431 568999999999999999999
Q ss_pred HHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCC-cCCCeeEEEecchhHHHhhhhhHHHHH
Q psy1548 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKL-NLSLLKHFILDECDKMLEQLEMRRDVQ 279 (448)
Q Consensus 201 ~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~-~~~~i~~lViDEah~l~~~~~~~~~~~ 279 (448)
+++.... ++++..++|+.....+...+..+ ++|+|+||++|.+.+..+.+ .+.++++||+||||++.....+...+.
T Consensus 317 ~~~~~~~-~~~v~~~~G~~~~~~~~~~~~~~-~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~ 394 (936)
T 4a2w_A 317 KHHFERQ-GYSVQGISGENFSNVSVEKVIED-SDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (936)
T ss_dssp HHHHHTT-TCCEEEECCC-----CCHHHHHH-CSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred HHHhccc-CceEEEEECCcchhhHHHHhccC-CCEEEecHHHHHHHHHcCccccccCCCEEEEECccccCCCccHHHHHH
Confidence 9998876 89999999998766554444443 89999999999999988776 788999999999999877623333333
Q ss_pred HHHHh----CCCCCeEEEEeccCCc-----------cHHHHH------------------HHhcCCCeEEEEcCcccccc
Q psy1548 280 EIFRS----SPHTKQVMMFSATLSK-----------EIRPVC------------------KKFMHDPMEVYVDDEAKLTL 326 (448)
Q Consensus 280 ~i~~~----l~~~~q~i~~SAT~~~-----------~~~~~~------------------~~~l~~~~~i~~~~~~~~~~ 326 (448)
.++.. ..+..|++++|||++. .+..++ ..+...|.............
T Consensus 395 ~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~ 474 (936)
T 4a2w_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRRIHN 474 (936)
T ss_dssp HHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCCSCC
T ss_pred HHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHHhccCCcceEEecccccCc
Confidence 33332 2456899999999852 111222 12222332222111100000
Q ss_pred -----------------------cc---eeEEEEE---------------------------------------------
Q psy1548 327 -----------------------HG---LQQHYVK--------------------------------------------- 335 (448)
Q Consensus 327 -----------------------~~---i~~~~~~--------------------------------------------- 335 (448)
.. +....+.
T Consensus 475 ~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~~~ 554 (936)
T 4a2w_A 475 PFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKYND 554 (936)
T ss_dssp HHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHH
Confidence 00 0000000
Q ss_pred ------------------------------------------------------cCcchHHHHHHHHHhh----CCCCeE
Q psy1548 336 ------------------------------------------------------LKENEKNKKLFELLDV----LEFNQV 357 (448)
Q Consensus 336 ------------------------------------------------------~~~~~k~~~L~~ll~~----~~~~~~ 357 (448)
.....|...|..++.. ..+.++
T Consensus 555 al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~rv 634 (936)
T 4a2w_A 555 ALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQTRT 634 (936)
T ss_dssp HHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCTTCCE
T ss_pred HHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCCCCeE
Confidence 0013356666667765 346799
Q ss_pred EEEECccHHHHHHHHHHHhC------------CCcEEEEeCCCCHHHHHHHHHHHhc-CCCceEEEEecChhhHHHHHHH
Q psy1548 358 VIFVKSVTRCIALSTLLSEQ------------NFPAVSIHRGMTQEERLKKYQEFKD-FHKGLAITFASDENDAKILNNV 424 (448)
Q Consensus 358 IIF~~s~~~a~~l~~~L~~~------------g~~~~~lh~~~~~~eR~~~l~~F~~-g~~g~~I~~~t~~~d~~~l~~i 424 (448)
||||+++..++.++..|++. |..+..+||+|++.+|.+++++|++ |+ +.|+++|+...+++ ++
T Consensus 635 LIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~--~~VLVaT~~~~eGI--Dl 710 (936)
T 4a2w_A 635 LLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD--NRLLIATSVADEGI--DI 710 (936)
T ss_dssp EEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------C--CSEEEEECC--------C
T ss_pred EEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCC--eeEEEEeCchhcCC--cc
Confidence 99999999999999999986 6667778999999999999999999 77 45777877655554 44
Q ss_pred HHHhcCCCCCCCccccccccccCC
Q psy1548 425 QDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 425 ~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
...--+-+.+.|.+...+.++.||
T Consensus 711 p~v~~VI~yD~p~s~~~~iQr~GR 734 (936)
T 4a2w_A 711 VQCNLVVLYEYSGNVTKMIQVRGR 734 (936)
T ss_dssp CCCSEEEEESCCSCSHHHHCC---
T ss_pred hhCCEEEEeCCCCCHHHHHHhcCC
Confidence 444445566778888888888888
No 48
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.97 E-value=1.8e-32 Score=304.27 Aligned_cols=252 Identities=15% Similarity=0.247 Sum_probs=201.2
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|. | ++ |++ ++|.++.|+|+++++|||||||+ |.+|++..+.. .++++||++||++|+.|+.+.++.
T Consensus 56 ~~-p-~i---Q~~------ai~~il~g~dvlv~apTGSGKTl-~~lp~l~~~~~--~~~~~lil~PtreLa~Q~~~~l~~ 121 (1054)
T 1gku_B 56 EP-R-AI---QKM------WAKRILRKESFAATAPTGVGKTS-FGLAMSLFLAL--KGKRCYVIFPTSLLVIQAAETIRK 121 (1054)
T ss_dssp SC-C-HH---HHH------HHHHHHTTCCEECCCCBTSCSHH-HHHHHHHHHHT--TSCCEEEEESCHHHHHHHHHHHHH
T ss_pred CC-H-HH---HHH------HHHHHHhCCCEEEEcCCCCCHHH-HHHHHHHHHhh--cCCeEEEEeccHHHHHHHHHHHHH
Confidence 77 7 77 999 99999999999999999999998 88999887654 356899999999999999999999
Q ss_pred hhccCCCc----eEEEEEcCcccHHhH---HHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH
Q psy1548 203 FSKYMSNI----KVGVFFGGLPIQKDE---EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275 (448)
Q Consensus 203 ~~~~~~~~----~v~~~~g~~~~~~~~---~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 275 (448)
+.... ++ ++..++|+.+...+. ..+.. ++|+|+||++|.+++.+ +++++++|+||||+|+++ .
T Consensus 122 l~~~~-~i~~~~~v~~~~Gg~~~~~~~~~~~~l~~--~~IlV~TP~~L~~~l~~----L~~l~~lViDEah~~l~~---~ 191 (1054)
T 1gku_B 122 YAEKA-GVGTENLIGYYHGRIPKREKENFMQNLRN--FKIVITTTQFLSKHYRE----LGHFDFIFVDDVDAILKA---S 191 (1054)
T ss_dssp HHTTT-CCSGGGSEEECCSSCCSHHHHHHHHSGGG--CSEEEEEHHHHHHCSTT----SCCCSEEEESCHHHHHTS---T
T ss_pred HHhhc-CCCccceEEEEeCCCChhhHHHHHhhccC--CCEEEEcHHHHHHHHHH----hccCCEEEEeChhhhhhc---c
Confidence 99877 77 899999998876642 23333 89999999999987765 668999999999999874 4
Q ss_pred HHHHHHHHhC-----------CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHH
Q psy1548 276 RDVQEIFRSS-----------PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKK 344 (448)
Q Consensus 276 ~~~~~i~~~l-----------~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~ 344 (448)
..+..++..+ +...|++++|||++.. ..+...++.++..+.+... .....++.+.+. ..+|...
T Consensus 192 ~~~~~i~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~-~~~~~~~~~~~~~i~v~~~-~~~~~~i~~~~~---~~~k~~~ 266 (1054)
T 1gku_B 192 KNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAK-KGKKAELFRQLLNFDIGSS-RITVRNVEDVAV---NDESIST 266 (1054)
T ss_dssp HHHHHHHHHTTEEEETTTTEEEECCSSEEEECCCCSC-CCTTHHHHHHHHCCCCSCC-EECCCCEEEEEE---SCCCTTT
T ss_pred ccHHHHHHHhCcchhhhhhhcccCCceEEEEecCCCc-hhHHHHHhhcceEEEccCc-ccCcCCceEEEe---chhHHHH
Confidence 5666666665 3567899999999887 5444444433333333333 334556777666 3556677
Q ss_pred HHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEe
Q psy1548 345 LFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFA 412 (448)
Q Consensus 345 L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~ 412 (448)
|..+++.. ++++||||++++.|+.++..|++. +++..+||+| .++++.|++|+. .|+++
T Consensus 267 L~~ll~~~-~~~~LVF~~t~~~a~~l~~~L~~~-~~v~~lhg~~-----~~~l~~F~~G~~--~VLVa 325 (1054)
T 1gku_B 267 LSSILEKL-GTGGIIYARTGEEAEEIYESLKNK-FRIGIVTATK-----KGDYEKFVEGEI--DHLIG 325 (1054)
T ss_dssp THHHHTTS-CSCEEEEESSHHHHHHHHHTTTTS-SCEEECTTSS-----SHHHHHHHHTSC--SEEEE
T ss_pred HHHHHhhc-CCCEEEEEcCHHHHHHHHHHHhhc-cCeeEEeccH-----HHHHHHHHcCCC--cEEEE
Confidence 77888766 478999999999999999999998 9999999998 378999999985 45555
No 49
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.97 E-value=5.3e-31 Score=276.86 Aligned_cols=301 Identities=19% Similarity=0.184 Sum_probs=198.7
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|+++ |.. ++|.++.|+ +..++||+|||++|++|++..... +.+++|++||++||.|+.+.+..+.
T Consensus 74 ~p~~V---Q~~------~i~~ll~G~--Iaem~TGsGKTlaf~LP~l~~~l~---g~~vlVltPTreLA~Q~~e~~~~l~ 139 (853)
T 2fsf_A 74 RHFDV---QLL------GGMVLNERC--IAEMRTGEGKTLTATLPAYLNALT---GKGVHVVTVNDYLAQRDAENNRPLF 139 (853)
T ss_dssp CCCHH---HHH------HHHHHHSSE--EEECCTTSCHHHHHHHHHHHHHTT---SSCCEEEESSHHHHHHHHHHHHHHH
T ss_pred CCChH---HHh------hcccccCCe--eeeecCCchHHHHHHHHHHHHHHc---CCcEEEEcCCHHHHHHHHHHHHHHH
Confidence 79999 999 999999998 999999999999999999865432 4579999999999999999999999
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHHhh------
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKMLEQ------ 271 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~~~------ 271 (448)
..+ ++++++++||.+... ..+..+ ++|+||||+++ .++++.+ .+.++++.++|+||||.|+..
T Consensus 140 ~~l-gl~v~~i~GG~~~~~--r~~~~~-~dIvvgTpgrl~fDyLrd~~~~~~~~~~~~~l~~lVlDEaD~mLiD~a~tpL 215 (853)
T 2fsf_A 140 EFL-GLTVGINLPGMPAPA--KREAYA-ADITYGTNNEYGFDYLRDNMAFSPEERVQRKLHYALVDEVDSILIDEARTPL 215 (853)
T ss_dssp HHT-TCCEEECCTTCCHHH--HHHHHH-SSEEEEEHHHHHHHHHHHTTCSSGGGCCCCSCCEEEESCHHHHTTTTTTCEE
T ss_pred Hhc-CCeEEEEeCCCCHHH--HHHhcC-CCEEEECCchhhHHHHHhhhhccHhHhcccCCcEEEECchHHHHHhcCcccc
Confidence 998 999999999987543 333333 89999999999 7887654 256789999999999999832
Q ss_pred ---------hhhHHHHHHHHHhCCC--------------------CCeEE------------------------EEeccC
Q psy1548 272 ---------LEMRRDVQEIFRSSPH--------------------TKQVM------------------------MFSATL 298 (448)
Q Consensus 272 ---------~~~~~~~~~i~~~l~~--------------------~~q~i------------------------~~SAT~ 298 (448)
.++...+..++..+++ .+|++ ++|||+
T Consensus 216 IiSg~~~~~~~~y~~i~~iv~~L~~~~~~~~~~~~~~~dy~vdek~rqv~lte~g~~~~e~~l~~~~l~~~~~~Lfsat~ 295 (853)
T 2fsf_A 216 IISGPAEDSSEMYKRVNKIIPHLIRQEKEDSETFQGEGHFSVDEKSRQVNLTERGLVLIEELLVKEGIMDEGESLYSPAN 295 (853)
T ss_dssp EEEEC---------------------------------------------------------------------------
T ss_pred cccCCCccchhHHHHHHHHHHhchhhhccccccccccccceeccccceEEEcHHHHHHHHHHHHhCCcccccccccCccc
Confidence 1367788888888864 45654 899997
Q ss_pred CccHHHH---H--HHhcC--------CC-----------------------------eEEEEcCcccccccceeE-----
Q psy1548 299 SKEIRPV---C--KKFMH--------DP-----------------------------MEVYVDDEAKLTLHGLQQ----- 331 (448)
Q Consensus 299 ~~~~~~~---~--~~~l~--------~~-----------------------------~~i~~~~~~~~~~~~i~~----- 331 (448)
+.-...+ + ..++. ++ ..+.+... ..+..+|.+
T Consensus 296 ~~~~~~i~~al~A~~l~~~d~dYiV~d~~vviVde~tgR~m~grr~sdGLhQaieake~v~I~~e-~~tla~It~qnyfr 374 (853)
T 2fsf_A 296 IMLMHHVTAALRAHALFTRDVDYIVKDGEVIIVDEHTGRTMQGRRWSDGLHQAVEAKEGVQIQNE-NQTLASITFQNYFR 374 (853)
T ss_dssp -------------------------------------------------------------CCCC-CEEEEEEEHHHHHT
T ss_pred chHHHHHHHHHHHHHHhhcCccceeecCcEEEEecccCcccCCCccchhhhHHHHhcccceeccc-ccccceeehHHHHh
Confidence 6421111 1 11111 11 11222221 112222221
Q ss_pred ------------------------------------------EEEEcCcchHHHHHHHHHhh--CCCCeEEEEECccHHH
Q psy1548 332 ------------------------------------------HYVKLKENEKNKKLFELLDV--LEFNQVVIFVKSVTRC 367 (448)
Q Consensus 332 ------------------------------------------~~~~~~~~~k~~~L~~ll~~--~~~~~~IIF~~s~~~a 367 (448)
.++.+...+|...+...+.. ..+.++||||+|++.+
T Consensus 375 ~Y~kl~GmTGTa~te~~ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~~~~~K~~al~~~i~~~~~~gqpvLVft~sie~s 454 (853)
T 2fsf_A 375 LYEKLAGMTGTADTEAFEFSSIYKLDTVVVPTNRPMIRKDLPDLVYMTEAEKIQAIIEDIKERTAKGQPVLVGTISIEKS 454 (853)
T ss_dssp TSSEEEEEECTTCCCHHHHHHHHCCEEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHHTTTCCEEEEESSHHHH
T ss_pred hhhhhhcCCCCchhHHHHHHHHhCCcEEEcCCCCCceeecCCcEEEeCHHHHHHHHHHHHHHHhcCCCCEEEEECcHHHH
Confidence 23556778899999988854 3466899999999999
Q ss_pred HHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh----hHHHH----------------------
Q psy1548 368 IALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN----DAKIL---------------------- 421 (448)
Q Consensus 368 ~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~----d~~~l---------------------- 421 (448)
+.|+..|++.|+++..+||++.+.+|..+.+.|+.| .|+++|+-. |....
T Consensus 455 e~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G----~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~ 530 (853)
T 2fsf_A 455 ELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA----AVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIK 530 (853)
T ss_dssp HHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT----CEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHH
T ss_pred HHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC----eEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHH
Confidence 999999999999999999999988888888888776 366666521 21110
Q ss_pred ---HH-HHHH-----hcCCCCCCCccccccccccCC
Q psy1548 422 ---NN-VQDR-----FDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 422 ---~~-i~~~-----~~~~~~~~p~~~~~~~~~~~~ 448 (448)
.. =+.. +.+-..++|++...+.++.||
T Consensus 531 ~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GR 566 (853)
T 2fsf_A 531 ADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGR 566 (853)
T ss_dssp HHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTT
T ss_pred HHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccc
Confidence 00 0112 467788999998888888887
No 50
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=6.3e-30 Score=293.40 Aligned_cols=273 Identities=20% Similarity=0.282 Sum_probs=204.2
Q ss_pred ccCCCCchhhhhhhccccccceeee-eCcceeeeccCCChhHHHHHHHHHHhhhcc--------CCCeEEEEeeccHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAV-LGMDILCQAKSGMGKTAVFVLATLQQLETT--------DSNVYVLVMCHTRELA 193 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~-~g~~vli~apTGsGKT~~~~l~~l~~l~~~--------~~~~~~lil~Pt~~L~ 193 (448)
|..++++ |.+ ++|.++ .++|++++||||||||++|.+|+++.+... ..+.++||++|+++|+
T Consensus 77 ~~~ln~i---Qs~------~~~~al~~~~N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa 147 (1724)
T 4f92_B 77 FKTLNRI---QSK------LYRAALETDENLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLV 147 (1724)
T ss_dssp CSBCCHH---HHH------THHHHHTCCCCEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHH
T ss_pred CCCCCHH---HHH------HHHHHHcCCCcEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHH
Confidence 7888899 999 999877 478999999999999999999999988542 2456899999999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC--CcCCCeeEEEecchhHHHhh
Q psy1548 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK--LNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 194 ~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~ 271 (448)
.|+++.+.+..... +++|..++|+.+..... . ..++|+|+||+++..++++.. ..+++++++|+||+|.+.+
T Consensus 148 ~e~~~~l~~~~~~~-gi~V~~~tGd~~~~~~~--~--~~~~IlVtTpEkld~llr~~~~~~~l~~v~~vIiDEvH~l~d- 221 (1724)
T 4f92_B 148 QEMVGSFGKRLATY-GITVAELTGDHQLCKEE--I--SATQIIVCTPEKWDIITRKGGERTYTQLVRLIILDEIHLLHD- 221 (1724)
T ss_dssp HHHHHHHHHHHTTT-TCCEEECCSSCSSCCTT--G--GGCSEEEECHHHHHHHTTSSTTHHHHTTEEEEEETTGGGGGS-
T ss_pred HHHHHHHHHHHhhC-CCEEEEEECCCCCCccc--c--CCCCEEEECHHHHHHHHcCCccchhhcCcCEEEEecchhcCC-
Confidence 99999999888777 89999999998754432 1 238999999999977776543 2478999999999996654
Q ss_pred hhhHHHHHHHHH-------hCCCCCeEEEEeccCCccHHHHHHHhcCCCe-EEEEcCcccccccceeEEEEEcCcchH--
Q psy1548 272 LEMRRDVQEIFR-------SSPHTKQVMMFSATLSKEIRPVCKKFMHDPM-EVYVDDEAKLTLHGLQQHYVKLKENEK-- 341 (448)
Q Consensus 272 ~~~~~~~~~i~~-------~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~-~i~~~~~~~~~~~~i~~~~~~~~~~~k-- 341 (448)
+.+..++.++. .+++..|+|++|||+|+ ..++++++..++. .+..... ...+..+.+.++.......
T Consensus 222 -~RG~~lE~~l~rl~~~~~~~~~~~riI~LSATl~N-~~dvA~wL~~~~~~~~~~~~~-~~RPvpL~~~~~~~~~~~~~~ 298 (1724)
T 4f92_B 222 -DRGPVLEALVARAIRNIEMTQEDVRLIGLSATLPN-YEDVATFLRVDPAKGLFYFDN-SFRPVPLEQTYVGITEKKAIK 298 (1724)
T ss_dssp -TTHHHHHHHHHHHHHHHHHHTCCCEEEEEECSCTT-HHHHHHHTTCCHHHHEEECCG-GGCSSCEEEECCEECCCCHHH
T ss_pred -ccHHHHHHHHHHHHHHHHhCCCCCcEEEEecccCC-HHHHHHHhCCCCCCCeEEECC-CCccCccEEEEeccCCcchhh
Confidence 55555555443 45788999999999986 4566665544321 1112122 2344567776665554322
Q ss_pred -HH----HHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhC-------------------------------------C
Q psy1548 342 -NK----KLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQ-------------------------------------N 378 (448)
Q Consensus 342 -~~----~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~-------------------------------------g 378 (448)
.. .+...+.. ...+++||||+|++.|+.+|+.|.+. .
T Consensus 299 ~~~~~~~~~~~~v~~~~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~ 378 (1724)
T 4f92_B 299 RFQIMNEIVYEKIMEHAGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLP 378 (1724)
T ss_dssp HHHHHHHHHHHHHTTCCSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTTCSSHHHHTTSCCSTHHHHHHTT
T ss_pred hhHHHHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchhHHHHHHhhhcccccHHHHHHhh
Confidence 22 22233332 34678999999999999999888531 1
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 379 ~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..+.++||||++++|..+.+.|++|. +.|.+||+.
T Consensus 379 ~Gva~HHagL~~~~R~~vE~~F~~G~--i~vlvaTsT 413 (1724)
T 4f92_B 379 YGFAIHHAGMTRVDRTLVEDLFADKH--IQVLVSTAT 413 (1724)
T ss_dssp TTEEEECSSSCTHHHHHHHHHHHTTC--CCEEEECHH
T ss_pred cCEEEEcCCCCHHHHHHHHHHHHCCC--CeEEEEcch
Confidence 23889999999999999999999998 567777664
No 51
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.97 E-value=1.5e-29 Score=290.30 Aligned_cols=286 Identities=17% Similarity=0.177 Sum_probs=210.6
Q ss_pred CCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeee-CcceeeeccCCChhHH
Q psy1548 86 LLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL-GMDILCQAKSGMGKTA 164 (448)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~-g~~vli~apTGsGKT~ 164 (448)
.+++...+.+...+ |..++++ |.+ +++.++. ++|++++||||||||+
T Consensus 910 ~L~~~~~e~l~~~~-----------------------f~~fnpi---Q~q------~~~~l~~~~~nvlv~APTGSGKTl 957 (1724)
T 4f92_B 910 ALRNSAFESLYQDK-----------------------FPFFNPI---QTQ------VFNTVYNSDDNVFVGAPTGSGKTI 957 (1724)
T ss_dssp GSCCHHHHTTTTTT-----------------------CSBCCHH---HHH------HHHHHHSCCSCEEEECCTTSCCHH
T ss_pred cccCHHHHHHHHhc-----------------------CCCCCHH---HHH------HHHHHhcCCCcEEEEeCCCCCchH
Confidence 35567777887777 8999999 999 9999865 5789999999999999
Q ss_pred HHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH-hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH
Q psy1548 165 VFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER-FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI 243 (448)
Q Consensus 165 ~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~-~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l 243 (448)
+|.+|++..+...+ +.++||++|+++|+.|+++.+++ +.... +++++.++|+..... ..+.. ++|+|+||+++
T Consensus 958 iaelail~~l~~~~-~~kavyi~P~raLa~q~~~~~~~~f~~~~-g~~V~~ltGd~~~~~--~~~~~--~~IiV~TPEkl 1031 (1724)
T 4f92_B 958 CAEFAILRMLLQSS-EGRCVYITPMEALAEQVYMDWYEKFQDRL-NKKVVLLTGETSTDL--KLLGK--GNIIISTPEKW 1031 (1724)
T ss_dssp HHHHHHHHHHHHCT-TCCEEEECSCHHHHHHHHHHHHHHHTTTS-CCCEEECCSCHHHHH--HHHHH--CSEEEECHHHH
T ss_pred HHHHHHHHHHHhCC-CCEEEEEcChHHHHHHHHHHHHHHhchhc-CCEEEEEECCCCcch--hhcCC--CCEEEECHHHH
Confidence 99999999887654 34899999999999999998875 55555 889999999875332 22332 79999999999
Q ss_pred HHHHHCC--CCcCCCeeEEEecchhHHHhhhhhHHHHHHHH-------HhCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 244 LALVRNK--KLNLSLLKHFILDECDKMLEQLEMRRDVQEIF-------RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 244 ~~~l~~~--~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~-------~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
..++++. ...+++++++|+||+|.+.+ ..+..++.++ ..+++..|+|++|||+++ ..++.+++...+.
T Consensus 1032 d~llr~~~~~~~l~~v~lvViDE~H~l~d--~rg~~le~il~rl~~i~~~~~~~~riI~lSATl~N-~~dla~WL~~~~~ 1108 (1724)
T 4f92_B 1032 DILSRRWKQRKNVQNINLFVVDEVHLIGG--ENGPVLEVICSRMRYISSQIERPIRIVALSSSLSN-AKDVAHWLGCSAT 1108 (1724)
T ss_dssp HHHHTTTTTCHHHHSCSEEEECCGGGGGS--TTHHHHHHHHHHHHHHHHTTSSCCEEEEEESCBTT-HHHHHHHHTCCST
T ss_pred HHHHhCcccccccceeeEEEeechhhcCC--CCCccHHHHHHHHHHHHhhcCCCceEEEEeCCCCC-HHHHHHHhCCCCC
Confidence 8888653 23478999999999998765 3444444443 345678999999999986 4677776654443
Q ss_pred EEEEcCcccccccceeEEEEEcCcchHH-------HHHHHHH-hhCCCCeEEEEECccHHHHHHHHHHHhC---------
Q psy1548 315 EVYVDDEAKLTLHGLQQHYVKLKENEKN-------KKLFELL-DVLEFNQVVIFVKSVTRCIALSTLLSEQ--------- 377 (448)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~~~k~-------~~L~~ll-~~~~~~~~IIF~~s~~~a~~l~~~L~~~--------- 377 (448)
.+..... ...+..++.++......... ..+...+ +....+++||||+|++.|+.+|..|...
T Consensus 1109 ~~~~~~~-~~RPvpL~~~i~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~ 1187 (1724)
T 4f92_B 1109 STFNFHP-NVRPVPLELHIQGFNISHTQTRLLSMAKPVYHAITKHSPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQR 1187 (1724)
T ss_dssp TEEECCG-GGCSSCEEEEEEEECCCSHHHHHHTTHHHHHHHHHHHCSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTT
T ss_pred CeEEeCC-CCCCCCeEEEEEeccCCCchhhhhhhcchHHHHHHHhcCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhh
Confidence 3332222 23344555555444432221 1222333 3345679999999999999988776421
Q ss_pred -------------------------CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 378 -------------------------NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 378 -------------------------g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
...+.++||||++++|..+.+.|++|. +.|++||+.
T Consensus 1188 ~~~~~~~~l~~~l~~~~d~~L~~~l~~GIa~hHagL~~~~R~~VE~lF~~G~--i~VLvaT~t 1248 (1724)
T 4f92_B 1188 FLHCTEKDLIPYLEKLSDSTLKETLLNGVGYLHEGLSPMERRLVEQLFSSGA--IQVVVASRS 1248 (1724)
T ss_dssp TBCSCHHHHHHHHTTCCCHHHHHHHHTTEEEECTTSCHHHHHHHHHHHHHTS--BCEEEEEGG
T ss_pred hhcccHHHHHHHHhhcccHHHHHHHhCCEEEECCCCCHHHHHHHHHHHHCCC--CeEEEEChH
Confidence 224899999999999999999999998 566777664
No 52
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=99.97 E-value=4.3e-32 Score=291.48 Aligned_cols=308 Identities=20% Similarity=0.232 Sum_probs=199.1
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccC---CCeEEEEeeccHHHHHHH-HHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTRELAFQI-SKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~---~~~~~lil~Pt~~L~~q~-~~~~~~~ 203 (448)
.+++||.+ +++.++.|+++++.+|||+|||++|++|++..+.... .+.++||++|+++|+.|+ .+.++++
T Consensus 7 ~l~~~Q~~------~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 7 QLRPYQME------VAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp CCCHHHHH------HHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CccHHHHH------HHHHHHhCCCEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 44566999 9999999999999999999999999999998775432 235899999999999999 9999998
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHH------HCCCCcCCCeeEEEecchhHHHhhhhhHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALV------RNKKLNLSLLKHFILDECDKMLEQLEMRRD 277 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l------~~~~~~~~~i~~lViDEah~l~~~~~~~~~ 277 (448)
... ++++..++|+.........+... ++|+|+||++|.+.+ ....+.+.++++||+||||++.....+...
T Consensus 81 ~~~--~~~v~~~~g~~~~~~~~~~~~~~-~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 81 LKK--WYRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HTT--TSCEEEEC----CCCCHHHHHHS-CSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred cCc--CceEEEEeCCcchhhHHHhhhcC-CCEEEECHHHHHHHHhccccccccceecccCcEEEEECccccCccchHHHH
Confidence 854 48899999998766555555443 899999999999988 445577889999999999987553122222
Q ss_pred HHHHHHh----C---------CCCCeEEEEeccCCcc-----------HHHHHHHhc------------------CCCeE
Q psy1548 278 VQEIFRS----S---------PHTKQVMMFSATLSKE-----------IRPVCKKFM------------------HDPME 315 (448)
Q Consensus 278 ~~~i~~~----l---------~~~~q~i~~SAT~~~~-----------~~~~~~~~l------------------~~~~~ 315 (448)
+...+.. . .+..|++++|||++.. +..++..+. ..|..
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~~ 237 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPCK 237 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCEE
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhhhcCCCce
Confidence 2222211 1 1567999999999862 222222221 12211
Q ss_pred EEEcCccccccc----------------ce---eE---------------------------------------------
Q psy1548 316 VYVDDEAKLTLH----------------GL---QQ--------------------------------------------- 331 (448)
Q Consensus 316 i~~~~~~~~~~~----------------~i---~~--------------------------------------------- 331 (448)
............ .+ ..
T Consensus 238 ~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 317 (699)
T 4gl2_A 238 KFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQINDTI 317 (699)
T ss_dssp EEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHHHS
T ss_pred EEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 111000000000 00 00
Q ss_pred -----------------------------EEEEcC--------------------------cchHHHHHHHHHhh----C
Q psy1548 332 -----------------------------HYVKLK--------------------------ENEKNKKLFELLDV----L 352 (448)
Q Consensus 332 -----------------------------~~~~~~--------------------------~~~k~~~L~~ll~~----~ 352 (448)
...... ...|...|..++.. .
T Consensus 318 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~~~ 397 (699)
T 4gl2_A 318 RMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYTRT 397 (699)
T ss_dssp CHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHhcC
Confidence 000000 01111222223322 2
Q ss_pred C-CCeEEEEECccHHHHHHHHHHHhC------CCcEEEEeCC--------CCHHHHHHHHHHHhcCCCceEEEEecChhh
Q psy1548 353 E-FNQVVIFVKSVTRCIALSTLLSEQ------NFPAVSIHRG--------MTQEERLKKYQEFKDFHKGLAITFASDEND 417 (448)
Q Consensus 353 ~-~~~~IIF~~s~~~a~~l~~~L~~~------g~~~~~lh~~--------~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d 417 (448)
+ ++++||||+++..++.+++.|++. |+++..+||+ |++.+|.++++.|++|+ ..|+++|+...
T Consensus 398 ~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g~--~~VLVaT~~~~ 475 (699)
T 4gl2_A 398 EESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTGK--INLLIATTVAE 475 (699)
T ss_dssp SSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC-----CCSEEECSCC
T ss_pred CCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcCC--CcEEEEccccc
Confidence 3 689999999999999999999987 8999999999 99999999999999988 45666666543
Q ss_pred HHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 418 AKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 418 ~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+++ ++.+.--+-..++|.+...+.++.||
T Consensus 476 ~GI--Dip~v~~VI~~d~p~s~~~~~Qr~GR 504 (699)
T 4gl2_A 476 EGL--DIKECNIVIRYGLVTNEIAMVQARGR 504 (699)
T ss_dssp TTS--CCCSCCCCEEESCCCCHHHHHHHHTT
T ss_pred cCC--ccccCCEEEEeCCCCCHHHHHHHcCC
Confidence 333 33333334456678777788888887
No 53
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.96 E-value=1.6e-29 Score=265.93 Aligned_cols=269 Identities=19% Similarity=0.184 Sum_probs=205.7
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
+ .|+++ |.. ++|.++.|+ |+.++||+|||++|.+|++..... +..++||+||++||.|..+++..
T Consensus 110 ~-rP~~V---Q~~------~ip~Ll~G~--Iaem~TGeGKTLa~~LP~~l~aL~---g~~v~VvTpTreLA~Qdae~m~~ 174 (922)
T 1nkt_A 110 Q-RPFDV---QVM------GAAALHLGN--VAEMKTGEGKTLTCVLPAYLNALA---GNGVHIVTVNDYLAKRDSEWMGR 174 (922)
T ss_dssp C-CCCHH---HHH------HHHHHHTTE--EEECCTTSCHHHHTHHHHHHHHTT---TSCEEEEESSHHHHHHHHHHHHH
T ss_pred C-CCCHH---HHH------HHHhHhcCC--EEEecCCCccHHHHHHHHHHHHHh---CCCeEEEeCCHHHHHHHHHHHHH
Confidence 6 89999 999 999999998 999999999999999999754332 34799999999999999999999
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHHhh----
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKMLEQ---- 271 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~~~---- 271 (448)
+...+ ++++++++||.+....... . .++|+||||++| .+++..+ .+.++.+.++|+||||.|+..
T Consensus 175 l~~~l-GLsv~~i~gg~~~~~r~~~--y-~~DIvygTpgrlgfDyLrD~m~~~~~~l~lr~l~~lIVDEaDsmLiDeart 250 (922)
T 1nkt_A 175 VHRFL-GLQVGVILATMTPDERRVA--Y-NADITYGTNNEFGFDYLRDNMAHSLDDLVQRGHHYAIVDEVDSILIDEART 250 (922)
T ss_dssp HHHHT-TCCEEECCTTCCHHHHHHH--H-HSSEEEEEHHHHHHHHHHHTTCSSGGGCCCCCCCEEEETTHHHHHTTGGGS
T ss_pred HHhhc-CCeEEEEeCCCCHHHHHHh--c-CCCEEEECchHhhHHHHHhhhhccHhhhccCCCCEEEEeChHHHHHhcCcc
Confidence 99998 9999999999875433322 2 389999999999 7777653 456788999999999999842
Q ss_pred -----------hhhHHHHHHHHHhCC---------CCCeEE-----------------EEeccCCccHHHH---H--HHh
Q psy1548 272 -----------LEMRRDVQEIFRSSP---------HTKQVM-----------------MFSATLSKEIRPV---C--KKF 309 (448)
Q Consensus 272 -----------~~~~~~~~~i~~~l~---------~~~q~i-----------------~~SAT~~~~~~~~---~--~~~ 309 (448)
.+|...+..++..++ +.+|++ ++|||++.-...+ + ..+
T Consensus 251 PLiiSg~~~~~~~~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l 330 (922)
T 1nkt_A 251 PLIISGPADGASNWYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKEL 330 (922)
T ss_dssp CEEEEEECCCCHHHHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHH
T ss_pred ceeecCCCCcchhHHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHH
Confidence 268899999999998 678998 8999987533222 1 122
Q ss_pred cC--------CCeEEEEcCcc----------------------------ccccccee-----------------------
Q psy1548 310 MH--------DPMEVYVDDEA----------------------------KLTLHGLQ----------------------- 330 (448)
Q Consensus 310 l~--------~~~~i~~~~~~----------------------------~~~~~~i~----------------------- 330 (448)
+. ++..+.++... ..+..+|.
T Consensus 331 ~~~d~dYiV~dg~vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~TlatIt~Qnyfr~Y~kL~GMTGTa~te~~ 410 (922)
T 1nkt_A 331 FSRDKDYIVRDGEVLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQTLATITLQNYFRLYDKLAGMTGTAQTEAA 410 (922)
T ss_dssp CCBTTTEEECSSCEEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEECHHHHHTTSSEEEEEESCCGGGHH
T ss_pred hhcccceeeecCceEEEecccCcccCCccccchhhHHHhccccccccccccccceeehHHHHHhhhhhhccccCchhHHH
Confidence 22 12222222100 00111111
Q ss_pred ------------------------EEEEEcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEE
Q psy1548 331 ------------------------QHYVKLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384 (448)
Q Consensus 331 ------------------------~~~~~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~l 384 (448)
..++.+...+|...+...+... .+.++||||+|++.++.|+..|++.|+++..+
T Consensus 411 Ef~~iY~l~vv~IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vL 490 (922)
T 1nkt_A 411 ELHEIYKLGVVSIPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERYAKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVL 490 (922)
T ss_dssp HHHHHHCCEEEECCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEE
T ss_pred HHHHHhCCCeEEeCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHHhcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEe
Confidence 1235566778999888887543 45689999999999999999999999999999
Q ss_pred eCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 385 h~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
||++.+.+|..+.+.|+.|. |+++|+
T Consensus 491 nak~~~rEa~iia~agr~G~----VtIATn 516 (922)
T 1nkt_A 491 NAKYHEQEATIIAVAGRRGG----VTVATN 516 (922)
T ss_dssp CSSCHHHHHHHHHTTTSTTC----EEEEET
T ss_pred cCChhHHHHHHHHhcCCCCe----EEEecc
Confidence 99998888877777777654 555555
No 54
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=99.96 E-value=1.5e-28 Score=274.53 Aligned_cols=258 Identities=14% Similarity=0.107 Sum_probs=194.2
Q ss_pred hhhhhhhccccccceeeee----Cc--ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 130 DTYLHRVARAGRFGTKAVL----GM--DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~----g~--~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.++|.+ +++.++. |+ |+++++|||+|||++|+++++..+. .+.+++|++||++|+.|+++.+.++
T Consensus 605 t~~Q~~------ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~---~g~~vlvlvPt~~La~Q~~~~~~~~ 675 (1151)
T 2eyq_A 605 TPDQAQ------AINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVD---NHKQVAVLVPTTLLAQQHYDNFRDR 675 (1151)
T ss_dssp CHHHHH------HHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHT---TTCEEEEECSSHHHHHHHHHHHHHH
T ss_pred CHHHHH------HHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHH---hCCeEEEEechHHHHHHHHHHHHHH
Confidence 444999 9998886 66 9999999999999999999887654 3459999999999999999999988
Q ss_pred hccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQE 280 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~ 280 (448)
.... ++++..+.|....... ...+..+.++|+|+||+.+. +.+.+++++++|+||+|++.. ....
T Consensus 676 ~~~~-~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~-----~~~~~~~l~lvIiDEaH~~g~------~~~~ 743 (1151)
T 2eyq_A 676 FANW-PVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQ-----SDVKFKDLGLLIVDEEHRFGV------RHKE 743 (1151)
T ss_dssp STTT-TCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHH-----SCCCCSSEEEEEEESGGGSCH------HHHH
T ss_pred hhcC-CCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHh-----CCccccccceEEEechHhcCh------HHHH
Confidence 7766 7888888876654433 34456667999999997653 346689999999999998533 2344
Q ss_pred HHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEE
Q psy1548 281 IFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360 (448)
Q Consensus 281 i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF 360 (448)
.++.++...++++||||+++....+....+.++..+...+. ....+..++...........+...+ ..+++++||
T Consensus 744 ~l~~l~~~~~vl~lSATp~p~~l~~~~~~~~~~~~i~~~~~---~r~~i~~~~~~~~~~~i~~~il~~l--~~g~qvlvf 818 (1151)
T 2eyq_A 744 RIKAMRANVDILTLTATPIPRTLNMAMSGMRDLSIIATPPA---RRLAVKTFVREYDSMVVREAILREI--LRGGQVYYL 818 (1151)
T ss_dssp HHHHHHTTSEEEEEESSCCCHHHHHHHTTTSEEEECCCCCC---BCBCEEEEEEECCHHHHHHHHHHHH--TTTCEEEEE
T ss_pred HHHHhcCCCCEEEEcCCCChhhHHHHHhcCCCceEEecCCC---CccccEEEEecCCHHHHHHHHHHHH--hcCCeEEEE
Confidence 45555677899999999988776666665555443332222 2234555544443322222222222 246899999
Q ss_pred ECccHHHHHHHHHHHhC--CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 361 VKSVTRCIALSTLLSEQ--NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~--g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
|++++.++.+++.|++. +..+..+||+|++.+|.+++++|++|+ ..|+++|+.
T Consensus 819 ~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g~--~~VLVaT~v 873 (1151)
T 2eyq_A 819 YNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQR--FNVLVCTTI 873 (1151)
T ss_dssp CCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTTS--CCEEEESST
T ss_pred ECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcCC--CcEEEECCc
Confidence 99999999999999987 889999999999999999999999987 467777764
No 55
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=99.96 E-value=7.1e-29 Score=256.83 Aligned_cols=295 Identities=16% Similarity=0.158 Sum_probs=199.8
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccC
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~ 207 (448)
..++||.+ +++.++.++++++++|||+|||++|+.++...+... +.++|||+|+++|+.|+.+.++++....
T Consensus 113 ~l~~~Q~~------ai~~~~~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~vlvl~P~~~L~~Q~~~~~~~~~~~~ 184 (510)
T 2oca_A 113 EPHWYQKD------AVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFS 184 (510)
T ss_dssp CCCHHHHH------HHHHHHHHSEEEEECCSTTTHHHHHHHHHHHHHHHC--SSEEEEEESSHHHHHHHHHHHHHTTSSC
T ss_pred CCCHHHHH------HHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHHhCC--CCeEEEEECcHHHHHHHHHHHHHhhcCC
Confidence 34555999 999999999999999999999999999988876533 3489999999999999999999886554
Q ss_pred CCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCC
Q psy1548 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPH 287 (448)
Q Consensus 208 ~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~ 287 (448)
+.++..+.|+.....+ ..+.++|+|+||+.+.. .....+.+++++|+||||++.. ..+..+++.+++
T Consensus 185 -~~~v~~~~~~~~~~~~----~~~~~~I~i~T~~~l~~---~~~~~~~~~~liIiDE~H~~~~-----~~~~~il~~~~~ 251 (510)
T 2oca_A 185 -HAMIKKIGGGASKDDK----YKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNN 251 (510)
T ss_dssp -GGGEEECGGGCCTTGG----GCTTCSEEEEEHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHGGGCTT
T ss_pred -ccceEEEecCCccccc----cccCCcEEEEeHHHHhh---chhhhhhcCCEEEEECCcCCCc-----ccHHHHHHhccc
Confidence 6788888888765544 23358999999997543 3445678899999999998755 346677788888
Q ss_pred CCeEEEEeccCCccHHHHHH-HhcCCCeEEEEcCc-----ccccccceeEEEEEcC---------------------cch
Q psy1548 288 TKQVMMFSATLSKEIRPVCK-KFMHDPMEVYVDDE-----AKLTLHGLQQHYVKLK---------------------ENE 340 (448)
Q Consensus 288 ~~q~i~~SAT~~~~~~~~~~-~~l~~~~~i~~~~~-----~~~~~~~i~~~~~~~~---------------------~~~ 340 (448)
..+++++|||+++....... ..+.++..+..... .......+.......+ ...
T Consensus 252 ~~~~l~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (510)
T 2oca_A 252 CMFKFGLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLKGKTYQEEIKIITGLSK 331 (510)
T ss_dssp CCEEEEEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHTTCCHHHHHHHHHTCHH
T ss_pred CcEEEEEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhccccccchHHHHHHHhccHH
Confidence 88999999999766433211 11223332222111 0111112222222221 112
Q ss_pred HHHHHHHHHhhC---CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEec-Chh
Q psy1548 341 KNKKLFELLDVL---EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFAS-DEN 416 (448)
Q Consensus 341 k~~~L~~ll~~~---~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t-~~~ 416 (448)
+...+.+++... .++++||||+ .++++.+++.|.+.+.++..+||+|++.+|.++++.|++|+ ..|+++| +.-
T Consensus 332 ~~~~l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g~--~~vLv~T~~~~ 408 (510)
T 2oca_A 332 RNKWIAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENGK--GIIIVASYGVF 408 (510)
T ss_dssp HHHHHHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHCC--SCEEEEEHHHH
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCCC--CCEEEEEcChh
Confidence 344455555443 3345566665 88999999999999889999999999999999999999987 4577777 421
Q ss_pred hHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 417 DAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 417 d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
..++ ++.+.--+-+...|.+...+.|+.||
T Consensus 409 ~~Gi--Dip~v~~vi~~~~~~s~~~~~Q~~GR 438 (510)
T 2oca_A 409 STGI--SVKNLHHVVLAHGVKSKIIVLQTIGR 438 (510)
T ss_dssp HHSC--CCCSEEEEEESSCCCSCCHHHHHHHH
T ss_pred hccc--ccccCcEEEEeCCCCCHHHHHHHHhc
Confidence 1111 11111112233445555556666665
No 56
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.95 E-value=2e-27 Score=248.24 Aligned_cols=226 Identities=17% Similarity=0.158 Sum_probs=165.9
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCccc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 221 (448)
+++.+..+++++++||||||||++|.+|+++. +.+++|++||++||.|+.+.+.+.. +..+...+|+...
T Consensus 225 i~~~L~~~~~vlv~ApTGSGKT~a~~l~ll~~------g~~vLVl~PTReLA~Qia~~l~~~~----g~~vg~~vG~~~~ 294 (666)
T 3o8b_A 225 PPAVPQSFQVAHLHAPTGSGKSTKVPAAYAAQ------GYKVLVLNPSVAATLGFGAYMSKAH----GIDPNIRTGVRTI 294 (666)
T ss_dssp CCCCCSSCEEEEEECCTTSCTTTHHHHHHHHT------TCCEEEEESCHHHHHHHHHHHHHHH----SCCCEEECSSCEE
T ss_pred HHHHHHcCCeEEEEeCCchhHHHHHHHHHHHC------CCeEEEEcchHHHHHHHHHHHHHHh----CCCeeEEECcEec
Confidence 55556678999999999999999999998862 4589999999999999988776654 4566677777542
Q ss_pred HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCe--EEEEeccCC
Q psy1548 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQ--VMMFSATLS 299 (448)
Q Consensus 222 ~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q--~i~~SAT~~ 299 (448)
...++|+|+||++| +....+.+++++++||||||+ ++. ++...+..+++.++...| ++++|||++
T Consensus 295 --------~~~~~IlV~TPGrL---l~~~~l~l~~l~~lVlDEAH~-l~~-~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 295 --------TTGAPVTYSTYGKF---LADGGCSGGAYDIIICDECHS-TDS-TTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp --------CCCCSEEEEEHHHH---HHTTSCCTTSCSEEEETTTTC-CSH-HHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred --------cCCCCEEEECcHHH---HhCCCcccCcccEEEEccchh-cCc-cHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 23489999999997 466778889999999999975 455 888889999999987666 788899998
Q ss_pred ccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCC
Q psy1548 300 KEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379 (448)
Q Consensus 300 ~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~ 379 (448)
..+. ...|....+.... ...+ . ....... ++....+++||||++++.|+.+++.|++.|+
T Consensus 362 ~~i~------~~~p~i~~v~~~~---~~~i-~---~~~~~~~-------l~~~~~~~vLVFv~Tr~~ae~la~~L~~~g~ 421 (666)
T 3o8b_A 362 GSVT------VPHPNIEEVALSN---TGEI-P---FYGKAIP-------IEAIRGGRHLIFCHSKKKCDELAAKLSGLGI 421 (666)
T ss_dssp TCCC------CCCTTEEEEECBS---CSSE-E---ETTEEEC-------GGGSSSSEEEEECSCHHHHHHHHHHHHTTTC
T ss_pred cccc------cCCcceEEEeecc---cchh-H---HHHhhhh-------hhhccCCcEEEEeCCHHHHHHHHHHHHhCCC
Confidence 7522 1222221111110 0001 0 0111100 2334578999999999999999999999999
Q ss_pred cEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHH
Q psy1548 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAK 419 (448)
Q Consensus 380 ~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~ 419 (448)
++..+||+|++++ |+++ +..|+++|+-.+++
T Consensus 422 ~v~~lHG~l~q~e-------r~~~--~~~VLVATdVaerG 452 (666)
T 3o8b_A 422 NAVAYYRGLDVSV-------IPTI--GDVVVVATDALMTG 452 (666)
T ss_dssp CEEEECTTSCGGG-------SCSS--SCEEEEECTTHHHH
T ss_pred cEEEecCCCCHHH-------HHhC--CCcEEEECChHHcc
Confidence 9999999999875 3443 34889988864433
No 57
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=99.95 E-value=4.5e-29 Score=267.06 Aligned_cols=259 Identities=20% Similarity=0.228 Sum_probs=182.3
Q ss_pred CCCCchhhhhhhccccccceeeeeC------cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLG------MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g------~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~ 198 (448)
.|++. |++ +++.++.+ +++++++|||||||++|++|++..+.. +.+++|++||++|+.|+++
T Consensus 368 ~lt~~---Q~~------ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~---g~qvlvlaPtr~La~Q~~~ 435 (780)
T 1gm5_A 368 KLTNA---QKR------AHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEA---GFQTAFMVPTSILAIQHYR 435 (780)
T ss_dssp CCCHH---HHH------HHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHH---TSCEEEECSCHHHHHHHHH
T ss_pred CCCHH---HHH------HHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHc---CCeEEEEeCcHHHHHHHHH
Confidence 45555 999 99988875 599999999999999999999988754 3589999999999999999
Q ss_pred HHHHhhccCCCceEEEEEcCcccHHh---HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhH
Q psy1548 199 EYERFSKYMSNIKVGVFFGGLPIQKD---EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275 (448)
Q Consensus 199 ~~~~~~~~~~~~~v~~~~g~~~~~~~---~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~ 275 (448)
.++++.... ++++..++|+...... ...+..+.++|+|+||+.+.+ ...+.+++++|+||+|++... .
T Consensus 436 ~l~~~~~~~-gi~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~-----~~~~~~l~lVVIDEaHr~g~~--q- 506 (780)
T 1gm5_A 436 RTVESFSKF-NIHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQE-----DVHFKNLGLVIIDEQHRFGVK--Q- 506 (780)
T ss_dssp HHHHHHTCS-SCCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHH-----CCCCSCCCEEEEESCCCC-------
T ss_pred HHHHHhhhc-CceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhh-----hhhccCCceEEecccchhhHH--H-
Confidence 999998877 8999999999876543 344566679999999987754 456889999999999986332 1
Q ss_pred HHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHh-hC-C
Q psy1548 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLD-VL-E 353 (448)
Q Consensus 276 ~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~-~ 353 (448)
...+.......++++||||+.+...... +..+.....++.. ......+...+ .... +...+...+. .. .
T Consensus 507 ---r~~l~~~~~~~~vL~mSATp~p~tl~~~--~~g~~~~s~i~~~-p~~r~~i~~~~--~~~~-~~~~l~~~i~~~l~~ 577 (780)
T 1gm5_A 507 ---REALMNKGKMVDTLVMSATPIPRSMALA--FYGDLDVTVIDEM-PPGRKEVQTML--VPMD-RVNEVYEFVRQEVMR 577 (780)
T ss_dssp ----CCCCSSSSCCCEEEEESSCCCHHHHHH--HTCCSSCEEECCC-CSSCCCCEECC--CCSS-THHHHHHHHHHHTTT
T ss_pred ---HHHHHHhCCCCCEEEEeCCCCHHHHHHH--HhCCcceeeeecc-CCCCcceEEEE--eccc-hHHHHHHHHHHHHhc
Confidence 1222233456899999999877644433 2332221112111 01112232222 2222 2333444443 22 4
Q ss_pred CCeEEEEECcc--------HHHHHHHHHHHh---CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 354 FNQVVIFVKSV--------TRCIALSTLLSE---QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 354 ~~~~IIF~~s~--------~~a~~l~~~L~~---~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+++++|||++. ..++.+++.|++ .++.+..+||+|++++|..+++.|++|+ ..|+++|+-
T Consensus 578 g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~~G~--~~ILVaT~v 648 (780)
T 1gm5_A 578 GGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFAEGR--YDILVSTTV 648 (780)
T ss_dssp SCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHTTTS--SSBCCCSSC
T ss_pred CCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHHCCC--CeEEEECCC
Confidence 67899999976 457889999988 4789999999999999999999999988 345555553
No 58
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.94 E-value=2.2e-28 Score=256.92 Aligned_cols=243 Identities=12% Similarity=0.087 Sum_probs=176.7
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
...|.++ |+. ++|.++.|+|+++++|||||||++|++|+++.+.. .+.++||++||++|+.|+.+.+..
T Consensus 169 ~~~~lpi---q~~------~i~~l~~g~dvlv~a~TGSGKT~~~~lpil~~l~~--~~~~vLvl~PtreLa~Qi~~~l~~ 237 (618)
T 2whx_A 169 ERIGEPD---YEV------DEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALK--RRLRTLILAPTRVVAAEMEEALRG 237 (618)
T ss_dssp CCCCCCC---CCC------CGGGGSTTCEEEECCCTTSSTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTTT
T ss_pred cccCCCc---ccc------CHHHHhcCCeEEEEcCCCCCHHHHHHHHHHHHHHh--CCCeEEEEcChHHHHHHHHHHhcC
Confidence 4678899 988 89999999999999999999999999999988765 346899999999999998877652
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
..+. +.+.. .. ........+.++|.+.+...+... ..+.++++||+||||++ +. ++...+..+.
T Consensus 238 -------~~v~-~~~~~-l~----~~~tp~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~-~~~~~~~~i~ 301 (618)
T 2whx_A 238 -------LPIR-YQTPA-VK----SDHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP-CSVAARGYIS 301 (618)
T ss_dssp -------SCEE-ECCTT-SS----CCCCSSSCEEEEEHHHHHHHHHHC-SSCCCCSEEEEESTTCC-SH-HHHHHHHHHH
T ss_pred -------Ccee-Eeccc-ce----eccCCCceEEEEChHHHHHHHhcc-ccccCCeEEEEECCCCC-Cc-cHHHHHHHHH
Confidence 2232 11111 00 001112357778888887665544 34789999999999998 54 7777888777
Q ss_pred HhCC-CCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEE
Q psy1548 283 RSSP-HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFV 361 (448)
Q Consensus 283 ~~l~-~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~ 361 (448)
..++ ++.|+++||||++..+..+.. .++..+.+.... +.. +...+...+.. ..+++||||
T Consensus 302 ~~l~~~~~q~il~SAT~~~~~~~~~~---~~~~~~~v~~~~--------------~~~-~~~~ll~~l~~-~~~~~LVF~ 362 (618)
T 2whx_A 302 TRVEMGEAAAIFMTATPPGSTDPFPQ---SNSPIEDIEREI--------------PER-SWNTGFDWITD-YQGKTVWFV 362 (618)
T ss_dssp HHHHHTSCEEEEECSSCTTCCCSSCC---CSSCEEEEECCC--------------CSS-CCSSSCHHHHH-CCSCEEEEC
T ss_pred HHhcccCccEEEEECCCchhhhhhhc---cCCceeeecccC--------------CHH-HHHHHHHHHHh-CCCCEEEEE
Confidence 7765 678999999999887543322 234333332210 100 01112222322 257999999
Q ss_pred CccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhh
Q psy1548 362 KSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEND 417 (448)
Q Consensus 362 ~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d 417 (448)
+|++.|+.+++.|++.|+++..+||+ +|.+++++|++|+ ..|+++|+...
T Consensus 363 ~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g~--~~VLVaTdv~~ 412 (618)
T 2whx_A 363 PSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLTD--WDFVVTTDISE 412 (618)
T ss_dssp SSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHSC--CSEEEECGGGG
T ss_pred CChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCCC--cEEEEECcHHH
Confidence 99999999999999999999999985 7889999999987 56778877533
No 59
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.94 E-value=9.6e-27 Score=250.35 Aligned_cols=284 Identities=12% Similarity=0.120 Sum_probs=198.5
Q ss_pred cCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeee-Ccceeeecc
Q psy1548 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVL-GMDILCQAK 157 (448)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~-g~~vli~ap 157 (448)
...|.++++++.+.+.+...+ ..|..+ |++ +++.++. |++++++||
T Consensus 71 ~~~f~~~~l~~~~~~~l~~r~------------------------~lP~~~---q~~------~i~~~l~~~~~vii~gp 117 (773)
T 2xau_A 71 INPFTGREFTPKYVDILKIRR------------------------ELPVHA---QRD------EFLKLYQNNQIMVFVGE 117 (773)
T ss_dssp BCTTTCSBCCHHHHHHHHHHT------------------------TSGGGG---GHH------HHHHHHHHCSEEEEECC
T ss_pred CCCccccCCCHHHHHHHHHhh------------------------cCChHH---HHH------HHHHHHhCCCeEEEECC
Confidence 457999999999999998765 468888 888 8888776 568999999
Q ss_pred CCChhHHHHHHHHHHhhh--ccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcE
Q psy1548 158 SGMGKTAVFVLATLQQLE--TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235 (448)
Q Consensus 158 TGsGKT~~~~l~~l~~l~--~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~I 235 (448)
||+|||+ ++|++.... ....+.++++++|+++|+.|+.+.+........+..++.-...... .....+|
T Consensus 118 TGSGKTt--llp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~~vG~~i~~~~~-------~~~~~~I 188 (773)
T 2xau_A 118 TGSGKTT--QIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGEEVGYSIRFENK-------TSNKTIL 188 (773)
T ss_dssp TTSSHHH--HHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTTTEEEEETTEEE-------CCTTCSE
T ss_pred CCCCHHH--HHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhheecceeccccc-------cCCCCCE
Confidence 9999998 456552221 1122567999999999999998766554321112233322111110 1124789
Q ss_pred EEEcHHHHHHHHHCCCCcCCCeeEEEecchhH-HHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDK-MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 236 lV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
+++||+++.+.+... ..+.++++||+||+|. .++.......+..+.... +..|++++|||++. ..+.. ++.++.
T Consensus 189 ~v~T~G~l~r~l~~~-~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~-~~~~iIl~SAT~~~--~~l~~-~~~~~~ 263 (773)
T 2xau_A 189 KYMTDGMLLREAMED-HDLSRYSCIILDEAHERTLATDILMGLLKQVVKRR-PDLKIIIMSATLDA--EKFQR-YFNDAP 263 (773)
T ss_dssp EEEEHHHHHHHHHHS-TTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHC-TTCEEEEEESCSCC--HHHHH-HTTSCC
T ss_pred EEECHHHHHHHHhhC-ccccCCCEEEecCccccccchHHHHHHHHHHHHhC-CCceEEEEeccccH--HHHHH-HhcCCC
Confidence 999999999877654 3488999999999996 555312334455555444 57899999999964 34444 444444
Q ss_pred EEEEcCcccccccceeEEEEEcCcchHHH----HHHHHHhhCCCCeEEEEECccHHHHHHHHHHHh-----------CCC
Q psy1548 315 EVYVDDEAKLTLHGLQQHYVKLKENEKNK----KLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE-----------QNF 379 (448)
Q Consensus 315 ~i~~~~~~~~~~~~i~~~~~~~~~~~k~~----~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~-----------~g~ 379 (448)
.+.+... ...+.++|......++.. .+..+......+++||||+++++++.+++.|++ .++
T Consensus 264 vi~v~gr----~~pv~~~~~~~~~~~~~~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~ 339 (773)
T 2xau_A 264 LLAVPGR----TYPVELYYTPEFQRDYLDSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPL 339 (773)
T ss_dssp EEECCCC----CCCEEEECCSSCCSCHHHHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCE
T ss_pred cccccCc----ccceEEEEecCCchhHHHHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCe
Confidence 4444332 234666665555544432 333344444678999999999999999999985 578
Q ss_pred cEEEEeCCCCHHHHHHHHHHHh-----cCCCceEEEEecCh
Q psy1548 380 PAVSIHRGMTQEERLKKYQEFK-----DFHKGLAITFASDE 415 (448)
Q Consensus 380 ~~~~lh~~~~~~eR~~~l~~F~-----~g~~g~~I~~~t~~ 415 (448)
.+..+||+|++++|.++++.|+ +|. ..|.++|+.
T Consensus 340 ~v~~lhg~l~~~eR~~v~~~f~~~~~~~g~--~kVlVAT~i 378 (773)
T 2xau_A 340 SVYPLYGSLPPHQQQRIFEPAPESHNGRPG--RKVVISTNI 378 (773)
T ss_dssp EEEEECTTCCHHHHGGGGSCCCCCSSSSCC--EEEEEECTH
T ss_pred EEEEeCCCCCHHHHHHHHhhcccccCCCCc--eEEEEeCcH
Confidence 8999999999999999999998 654 678888875
No 60
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.94 E-value=1.8e-27 Score=242.26 Aligned_cols=241 Identities=12% Similarity=0.111 Sum_probs=167.2
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcce-eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDI-LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~v-li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~ 201 (448)
+..|+++ | + ++|.++.|+++ ++++|||||||++|++|++..+.. .+.++||++||++|+.|+.+.+.
T Consensus 2 ~~q~~~i---q-~------~i~~~l~~~~~~lv~a~TGsGKT~~~~~~~l~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~ 69 (451)
T 2jlq_A 2 SAMGEPD---Y-E------VDEDIFRKKRLTIMDLHPGAGKTKRILPSIVREALL--RRLRTLILAPTRVVAAEMEEALR 69 (451)
T ss_dssp CCCCSCC---C-C------CCGGGGSTTCEEEECCCTTSSCCTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT
T ss_pred CCCCCCc---H-H------HHHHHHhcCCeEEEECCCCCCHhhHHHHHHHHHHHh--cCCcEEEECCCHHHHHHHHHHhc
Confidence 6678887 6 6 68999999887 999999999999999999987654 34689999999999999888764
Q ss_pred HhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHH
Q psy1548 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEI 281 (448)
Q Consensus 202 ~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i 281 (448)
+..+....+.... .......|.++|++.+...+.+. ..+.+++++|+||||++ +. .+...+..+
T Consensus 70 -------g~~v~~~~~~~~~------~~~~~~~i~~~t~~~l~~~l~~~-~~l~~~~~iViDEah~~-~~-~~~~~~~~~ 133 (451)
T 2jlq_A 70 -------GLPIRYQTPAVKS------DHTGREIVDLMCHATFTTRLLSS-TRVPNYNLIVMDEAHFT-DP-CSVAARGYI 133 (451)
T ss_dssp -------TSCEEECCTTCSC------CCCSSCCEEEEEHHHHHHHHHHC-SCCCCCSEEEEETTTCC-SH-HHHHHHHHH
T ss_pred -------Cceeeeeeccccc------cCCCCceEEEEChHHHHHHhhCc-ccccCCCEEEEeCCccC-Cc-chHHHHHHH
Confidence 2333221111100 01123579999999998777644 45789999999999977 33 333333322
Q ss_pred HH-hCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEE
Q psy1548 282 FR-SSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF 360 (448)
Q Consensus 282 ~~-~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF 360 (448)
.. ..+++.|+++||||++.....+ +..++..+..... ..... + ..+...+... .+++|||
T Consensus 134 ~~~~~~~~~~~i~~SAT~~~~~~~~---~~~~~~~~~~~~~--~p~~~----~---------~~~~~~l~~~-~~~~lVF 194 (451)
T 2jlq_A 134 STRVEMGEAAAIFMTATPPGSTDPF---PQSNSPIEDIERE--IPERS----W---------NTGFDWITDY-QGKTVWF 194 (451)
T ss_dssp HHHHHTTSCEEEEECSSCTTCCCSS---CCCSSCEEEEECC--CCSSC----C---------SSSCHHHHHC-CSCEEEE
T ss_pred HHhhcCCCceEEEEccCCCccchhh---hcCCCceEecCcc--CCchh----h---------HHHHHHHHhC-CCCEEEE
Confidence 22 2356789999999998764332 2334443333211 00000 0 0112223332 5689999
Q ss_pred ECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 361 VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 361 ~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
|+++++|+.+++.|++.|+.+..+||++. .++++.|++|+ ..|+++|+-.
T Consensus 195 ~~s~~~a~~l~~~L~~~g~~~~~lh~~~~----~~~~~~f~~g~--~~vLVaT~v~ 244 (451)
T 2jlq_A 195 VPSIKAGNDIANCLRKSGKRVIQLSRKTF----DTEYPKTKLTD--WDFVVTTDIS 244 (451)
T ss_dssp CSSHHHHHHHHHHHHTTTCCEEEECTTTH----HHHGGGGGSSC--CSEEEECGGG
T ss_pred cCCHHHHHHHHHHHHHcCCeEEECCHHHH----HHHHHhhccCC--ceEEEECCHH
Confidence 99999999999999999999999999864 57999999988 4677777653
No 61
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=99.93 E-value=3.1e-28 Score=249.58 Aligned_cols=239 Identities=17% Similarity=0.166 Sum_probs=174.4
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.+..+++||.+ +++.++.++++++++|||+|||++|+.++... +.++||++|+++|+.|+.+.+.+|
T Consensus 90 ~~~~l~~~Q~~------ai~~i~~~~~~ll~~~TGsGKT~~~l~~i~~~------~~~~Lvl~P~~~L~~Q~~~~~~~~- 156 (472)
T 2fwr_A 90 AEISLRDYQEK------ALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF- 156 (472)
T ss_dssp CCCCBCHHHHH------HHHHHTTTTEEEEECCTTSCHHHHHHHHHHHH------CSCEEEEESSHHHHHHHHHHGGGG-
T ss_pred CCCCcCHHHHH------HHHHHHhcCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEECCHHHHHHHHHHHHhC-
Confidence 35567788999 99999999999999999999999999988764 358999999999999998888884
Q ss_pred ccCCCce-EEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHH
Q psy1548 205 KYMSNIK-VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFR 283 (448)
Q Consensus 205 ~~~~~~~-v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~ 283 (448)
+++ +..+.|+... ..+|+|+||+.+...+.. ...+++++|+||||++.+. .+.. ++.
T Consensus 157 ----~~~~v~~~~g~~~~----------~~~Ivv~T~~~l~~~~~~---~~~~~~liIvDEaH~~~~~-~~~~----~~~ 214 (472)
T 2fwr_A 157 ----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYVQ----IAQ 214 (472)
T ss_dssp ----CGGGEEEBSSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEETGGGTTST-TTHH----HHH
T ss_pred ----CCcceEEECCCcCC----------cCCEEEEEcHHHHHHHHH---hcCCCCEEEEECCcCCCCh-HHHH----HHH
Confidence 566 7787777642 368999999998776542 1245889999999999876 6553 444
Q ss_pred hCCCCCeEEEEeccCCc-------------------cHHHHHHHhcCCCeEE--EEcCccc--c----------------
Q psy1548 284 SSPHTKQVMMFSATLSK-------------------EIRPVCKKFMHDPMEV--YVDDEAK--L---------------- 324 (448)
Q Consensus 284 ~l~~~~q~i~~SAT~~~-------------------~~~~~~~~~l~~~~~i--~~~~~~~--~---------------- 324 (448)
.+ +..+++++|||+.. ...++...++..+... .+..... .
T Consensus 215 ~~-~~~~~l~lSATp~~~~~~~~~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 293 (472)
T 2fwr_A 215 MS-IAPFRLGLTATFEREDGRHEILKEVVGGKVFELFPDSLAGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRAR 293 (472)
T ss_dssp TC-CCSEEEEEESCCCCTTSGGGSHHHHTCCEEEECCHHHHTSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSC
T ss_pred hc-CCCeEEEEecCccCCCCHHHHHHHHhCCeEeecCHHHHhcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 44 45789999999873 2333323333322211 1110000 0
Q ss_pred -----cccceeEEE---------------------EEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCC
Q psy1548 325 -----TLHGLQQHY---------------------VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQN 378 (448)
Q Consensus 325 -----~~~~i~~~~---------------------~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g 378 (448)
....+.+.+ +.+....|...+.+++....++++||||++...++.+++.|.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~k~lvF~~~~~~~~~l~~~l~--- 370 (472)
T 2fwr_A 294 GITLRRAEDFNKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERHRKDKIIIFTRHNELVYRISKVFL--- 370 (472)
T ss_dssp CCTTTCCSSSTTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHTSSSCBCCBCSCHHHHHHHHHHTT---
T ss_pred CccccchhhHHHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHhC---
Confidence 000000000 012234577888899988888899999999999999999984
Q ss_pred CcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 379 FPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 379 ~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+..+||+++..+|.++++.|++|+
T Consensus 371 --~~~~~g~~~~~~R~~~~~~F~~g~ 394 (472)
T 2fwr_A 371 --IPAITHRTSREEREEILEGFRTGR 394 (472)
T ss_dssp --CCBCCSSSCSHHHHTHHHHHHHSS
T ss_pred --cceeeCCCCHHHHHHHHHHHhCCC
Confidence 567999999999999999999988
No 62
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.93 E-value=2e-27 Score=251.32 Aligned_cols=241 Identities=14% Similarity=0.151 Sum_probs=159.8
Q ss_pred CCCCchhhhh-----hhccccccceeee------eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHH
Q psy1548 125 MPEDSDTYLH-----RVARAGRFGTKAV------LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193 (448)
Q Consensus 125 ~p~~~~~yQ~-----~~~~~~~~~~~~~------~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~ 193 (448)
.|+++ |+ + ++|.++ .|+|+++++|||||||++|++|+++.+.. .+.+++|++||++|+
T Consensus 215 ~pt~I---Q~~~r~~~------aIp~~l~~~~l~~g~dvlv~apTGSGKTl~~ll~il~~l~~--~~~~~lilaPTr~La 283 (673)
T 2wv9_A 215 YVSAI---VQGERVEE------PVPEAYNPEMLKKRQLTVLDLHPGAGKTRRILPQIIKDAIQ--KRLRTAVLAPTRVVA 283 (673)
T ss_dssp EEEEE---ECC-------------CCCCCGGGGSTTCEEEECCCTTTTTTTTHHHHHHHHHHH--TTCCEEEEESSHHHH
T ss_pred ccCce---eecccccc------chHHHhhHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHh--CCCcEEEEccHHHHH
Confidence 78999 99 8 999988 89999999999999999999999987654 346899999999999
Q ss_pred HHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhh
Q psy1548 194 FQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLE 273 (448)
Q Consensus 194 ~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~ 273 (448)
.|+++.++.+. +. ...+.. . .......-+-+.+.+.+...+... ..+++++++|+||||++ +. .
T Consensus 284 ~Q~~~~l~~~~-----i~--~~~~~l--~----~v~tp~~ll~~l~~~~l~~~l~~~-~~l~~l~lvViDEaH~~-~~-~ 347 (673)
T 2wv9_A 284 AEMAEALRGLP-----VR--YLTPAV--Q----REHSGNEIVDVMCHATLTHRLMSP-LRVPNYNLFVMDEAHFT-DP-A 347 (673)
T ss_dssp HHHHHHTTTSC-----CE--ECCC---------CCCCSCCCEEEEEHHHHHHHHHSS-SCCCCCSEEEEESTTCC-CH-H
T ss_pred HHHHHHHhcCC-----ee--eecccc--c----ccCCHHHHHHHHHhhhhHHHHhcc-cccccceEEEEeCCccc-Cc-c
Confidence 99988776542 21 111100 0 000001124444555555544443 56889999999999988 22 2
Q ss_pred hHHHHHHHHHhC-CCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhC
Q psy1548 274 MRRDVQEIFRSS-PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL 352 (448)
Q Consensus 274 ~~~~~~~i~~~l-~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~ 352 (448)
+...+..+...+ +...|+++||||++..+..+... ..|.. .+.. ..+...+...+ ..+..
T Consensus 348 ~~~~~~~l~~~~~~~~~~vl~~SAT~~~~i~~~~~~--~~~i~-~v~~--------------~~~~~~~~~~l-~~l~~- 408 (673)
T 2wv9_A 348 SIAARGYIATRVEAGEAAAIFMTATPPGTSDPFPDT--NSPVH-DVSS--------------EIPDRAWSSGF-EWITD- 408 (673)
T ss_dssp HHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCCC--SSCEE-EEEC--------------CCCSSCCSSCC-HHHHS-
T ss_pred HHHHHHHHHHhccccCCcEEEEcCCCChhhhhhccc--CCceE-EEee--------------ecCHHHHHHHH-HHHHh-
Confidence 223333333333 36789999999998774432221 11211 1100 01111111112 22222
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhh
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEND 417 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d 417 (448)
.++++||||++++.|+.+++.|++.|+++..+||+ +|.++++.|++|+ ..|+++|+...
T Consensus 409 ~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g~--~~VLVaTdv~e 467 (673)
T 2wv9_A 409 YAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNGD--WDFVITTDISE 467 (673)
T ss_dssp CCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTCC--CSEEEECGGGG
T ss_pred CCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCCC--ceEEEECchhh
Confidence 46799999999999999999999999999999994 8999999999987 56777877533
No 63
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.93 E-value=1.4e-28 Score=249.41 Aligned_cols=220 Identities=14% Similarity=0.161 Sum_probs=140.6
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
.+++|+|+++++|||||||++|++|+++.+... +.+++|++||++|+.|+++.++.+ .+....+..
T Consensus 4 ~l~~g~~vlv~a~TGSGKT~~~l~~~l~~~~~~--~~~~lil~Ptr~La~Q~~~~l~~~-------~v~~~~~~~----- 69 (440)
T 1yks_A 4 MLKKGMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGL-------DVKFHTQAF----- 69 (440)
T ss_dssp TTSTTCEEEECCCTTSSTTTTHHHHHHHHHHHT--TCCEEEEESSHHHHHHHHHHTTTS-------CEEEESSCC-----
T ss_pred HhhCCCCEEEEcCCCCCHHHHHHHHHHHHHHhc--CCeEEEEcchHHHHHHHHHHHhcC-------CeEEecccc-----
Confidence 456799999999999999999999999876543 468999999999999998877643 222111110
Q ss_pred HHHHhcCCCcEEEEcHHHHH---------HHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC-CCCCeEEEE
Q psy1548 225 EEYLKTHNPQIVVGTPGRIL---------ALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS-PHTKQVMMF 294 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~---------~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l-~~~~q~i~~ 294 (448)
-.++||+++. ..+. ....+++++++|+||+|++ +. ++...+..+.... +...|+++|
T Consensus 70 ----------~~v~Tp~~l~~~l~~~~l~~~~~-~~~~~~~l~~vViDEah~~-~~-~~~~~~~~~~~~~~~~~~~~l~~ 136 (440)
T 1yks_A 70 ----------SAHGSGREVIDAMCHATLTYRML-EPTRVVNWEVIIMDEAHFL-DP-ASIAARGWAAHRARANESATILM 136 (440)
T ss_dssp ----------CCCCCSSCCEEEEEHHHHHHHHT-SSSCCCCCSEEEETTTTCC-SH-HHHHHHHHHHHHHHTTSCEEEEE
T ss_pred ----------eeccCCccceeeecccchhHhhh-CcccccCccEEEEECcccc-Cc-chHHHHHHHHHHhccCCceEEEE
Confidence 0255554432 2222 2345789999999999998 32 3433333333322 367899999
Q ss_pred eccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHH
Q psy1548 295 SATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLL 374 (448)
Q Consensus 295 SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L 374 (448)
|||+++.+..+... ..+.... ...++...+...+..+.+ .++++||||++++.|+.+++.|
T Consensus 137 SAT~~~~~~~~~~~--~~~~~~~---------------~~~~~~~~~~~~~~~l~~--~~~~~lVF~~s~~~a~~l~~~L 197 (440)
T 1yks_A 137 TATPPGTSDEFPHS--NGEIEDV---------------QTDIPSEPWNTGHDWILA--DKRPTAWFLPSIRAANVMAASL 197 (440)
T ss_dssp CSSCTTCCCSSCCC--SSCEEEE---------------ECCCCSSCCSSSCHHHHH--CCSCEEEECSCHHHHHHHHHHH
T ss_pred eCCCCchhhhhhhc--CCCeeEe---------------eeccChHHHHHHHHHHHh--cCCCEEEEeCCHHHHHHHHHHH
Confidence 99998775433221 1111110 011111111111222222 2579999999999999999999
Q ss_pred HhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 375 SEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 375 ~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
++.|+++..+|| ++|.++++.|++|+ ..|+++|+..
T Consensus 198 ~~~~~~v~~lhg----~~R~~~~~~F~~g~--~~vLVaT~v~ 233 (440)
T 1yks_A 198 RKAGKSVVVLNR----KTFEREYPTIKQKK--PDFILATDIA 233 (440)
T ss_dssp HHTTCCEEECCS----SSCC--------CC--CSEEEESSST
T ss_pred HHcCCCEEEecc----hhHHHHHhhhcCCC--ceEEEECChh
Confidence 999999999999 46899999999987 5677777753
No 64
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=99.92 E-value=2.8e-26 Score=241.54 Aligned_cols=294 Identities=15% Similarity=0.184 Sum_probs=161.8
Q ss_pred Cchhhhhhhccccccceeeee----C-cceeeeccCCChhHHHHHHHHHHhhhccC-------CCeEEEEeeccHHHHHH
Q psy1548 128 DSDTYLHRVARAGRFGTKAVL----G-MDILCQAKSGMGKTAVFVLATLQQLETTD-------SNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~----g-~~vli~apTGsGKT~~~~l~~l~~l~~~~-------~~~~~lil~Pt~~L~~q 195 (448)
..++||.+ +++.++. | +++++++|||+|||++++..+ ..+.... .+.++|||+|+++|+.|
T Consensus 178 ~lr~~Q~~------ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~-~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q 250 (590)
T 3h1t_A 178 SPRYYQQI------AINRAVQSVLQGKKRSLITMATGTGKTVVAFQIS-WKLWSARWNRTGDYRKPRILFLADRNVLVDD 250 (590)
T ss_dssp -CCHHHHH------HHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHH-HHHHHTTCCSSCSSSCCCEEEEEC-------
T ss_pred CchHHHHH------HHHHHHHHHhcCCCceEEEecCCCChHHHHHHHH-HHHHhcccccccccCCCeEEEEeCCHHHHHH
Confidence 56777999 8887775 4 679999999999999965444 4443332 56799999999999999
Q ss_pred HH-HHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHC----CCCcCCCeeEEEecchhHHHh
Q psy1548 196 IS-KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN----KKLNLSLLKHFILDECDKMLE 270 (448)
Q Consensus 196 ~~-~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~----~~~~~~~i~~lViDEah~l~~ 270 (448)
+. +.++.+. ..+..+.++. .....+|+|+||+++...... ..+...++++||+||||++..
T Consensus 251 ~~~~~~~~~~-----~~~~~~~~~~---------~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~lvIiDEaH~~~~ 316 (590)
T 3h1t_A 251 PKDKTFTPFG-----DARHKIEGGK---------VVKSREIYFAIYQSIASDERRPGLYKEFPQDFFDLIIIDECHRGSA 316 (590)
T ss_dssp ----CCTTTC-----SSEEECCC-----------CCSSCSEEEEEGGGC------CCGGGGSCTTSCSEEEESCCC----
T ss_pred HHHHHHHhcc-----hhhhhhhccC---------CCCCCcEEEEEhhhhccccccccccccCCCCccCEEEEECCccccc
Confidence 88 6666553 2333333221 122479999999999887642 234567789999999999866
Q ss_pred hhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCc----cccccccee----------------
Q psy1548 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE----AKLTLHGLQ---------------- 330 (448)
Q Consensus 271 ~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~----~~~~~~~i~---------------- 330 (448)
. ....+..++..++ ..++++||||+..........++..+.....-.. ....+..+.
T Consensus 317 ~--~~~~~~~il~~~~-~~~~l~lTATP~~~~~~~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~ 393 (590)
T 3h1t_A 317 R--DNSNWREILEYFE-PAFQIGMTATPLREDNRDTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKG 393 (590)
T ss_dssp -------CHHHHHHST-TSEEEEEESSCSCTTTHHHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC--------
T ss_pred c--chHHHHHHHHhCC-cceEEEeccccccccchhHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeeccccccccc
Confidence 3 2355677777775 4679999999875433333333333322110000 000000000
Q ss_pred ----------EEEEEcCc-------chHHH----HHHHHHhh-CCCCeEEEEECccHHHHHHHHHHHhCCC--------c
Q psy1548 331 ----------QHYVKLKE-------NEKNK----KLFELLDV-LEFNQVVIFVKSVTRCIALSTLLSEQNF--------P 380 (448)
Q Consensus 331 ----------~~~~~~~~-------~~k~~----~L~~ll~~-~~~~~~IIF~~s~~~a~~l~~~L~~~g~--------~ 380 (448)
........ ..+.. .+...+.. ...+++||||+++.+|+.+++.|++.+. .
T Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~ 473 (590)
T 3h1t_A 394 DVDRFGREIPDGEYQTKDFERVIALKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDY 473 (590)
T ss_dssp ---------------CCSHHHHHHHHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTS
T ss_pred cccccccccccccCCHHHhhhHhcChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCe
Confidence 00000000 01111 23333433 3457999999999999999999987543 2
Q ss_pred EEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC-hhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD-ENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 381 ~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~-~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
+..+||+++. +|.+++++|++|+....+.++|+ --..++ ++...-.+-+...|.+...+.||.||
T Consensus 474 ~~~i~g~~~~-~r~~~l~~F~~~~~~~~~ilvtt~~l~~Gi--Dip~v~~Vi~~~~~~s~~~~~Q~iGR 539 (590)
T 3h1t_A 474 VARVTSEEGK-IGKGHLSRFQELETSTPVILTTSQLLTTGV--DAPTCKNVVLARVVNSMSEFKQIVGR 539 (590)
T ss_dssp EEECSSTTHH-HHHHHHHHHHCTTCCCCCEEEESSTTTTTC--CCTTEEEEEEESCCCCHHHHHHHHTT
T ss_pred EEEEeCCChH-HHHHHHHHHhCCCCCCCEEEEECChhhcCc--cchheeEEEEEecCCChHHHHHHHhh
Confidence 7889999764 79999999999886544444443 211211 11111112233445666667777777
No 65
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.92 E-value=2.6e-25 Score=224.97 Aligned_cols=225 Identities=12% Similarity=0.130 Sum_probs=152.2
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 227 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~ 227 (448)
+|+++++++|||||||++|++|+++.+.. .+.+++|++||++|+.|+.+.+. +..+....|+...
T Consensus 1 kg~~~lv~a~TGsGKT~~~l~~~l~~~~~--~g~~~lvl~Pt~~La~Q~~~~~~-------~~~v~~~~~~~~~------ 65 (431)
T 2v6i_A 1 KRELTVLDLHPGAGKTRRVLPQLVREAVK--KRLRTVILAPTRVVASEMYEALR-------GEPIRYMTPAVQS------ 65 (431)
T ss_dssp -CCEEEEECCTTSCTTTTHHHHHHHHHHH--TTCCEEEEESSHHHHHHHHHHTT-------TSCEEEC------------
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHh--CCCCEEEECcHHHHHHHHHHHhC-------CCeEEEEecCccc------
Confidence 47899999999999999999999966543 34589999999999999877664 3455554444211
Q ss_pred HhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHh-CCCCCeEEEEeccCCccHHHHH
Q psy1548 228 LKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRS-SPHTKQVMMFSATLSKEIRPVC 306 (448)
Q Consensus 228 l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~-l~~~~q~i~~SAT~~~~~~~~~ 306 (448)
.......+.+.|.+.+...+.. ...+.+++++|+||+|++ +. .+......+... .+...|+++||||+++.+..+.
T Consensus 66 ~~~~~~~~~~~~~~~l~~~l~~-~~~~~~l~~vViDEaH~~-~~-~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~ 142 (431)
T 2v6i_A 66 ERTGNEIVDFMCHSTFTMKLLQ-GVRVPNYNLYIMDEAHFL-DP-ASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFP 142 (431)
T ss_dssp ---CCCSEEEEEHHHHHHHHHH-TCCCCCCSEEEEESTTCC-SH-HHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSC
T ss_pred cCCCCceEEEEchHHHHHHHhc-CccccCCCEEEEeCCccC-Cc-cHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhc
Confidence 1111245777888888766555 455889999999999987 32 333333333333 2568899999999987643221
Q ss_pred HHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC
Q psy1548 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386 (448)
Q Consensus 307 ~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~ 386 (448)
.. ..|.. .... ..+. .+...+...+... .+++||||+++++|+.+++.|++.|+.+..+||
T Consensus 143 ~~--~~~i~-~~~~--------------~~~~-~~~~~~~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~~~~v~~lhg 203 (431)
T 2v6i_A 143 PS--NSPII-DEET--------------RIPD-KAWNSGYEWITEF-DGRTVWFVHSIKQGAEIGTCLQKAGKKVLYLNR 203 (431)
T ss_dssp CC--SSCCE-EEEC--------------CCCS-SCCSSCCHHHHSC-SSCEEEECSSHHHHHHHHHHHHHTTCCEEEEST
T ss_pred CC--CCcee-eccc--------------cCCH-HHHHHHHHHHHcC-CCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCC
Confidence 11 11111 1100 0111 1111223334433 568999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 387 GMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+ +|.+++++|++|+ ..|+++|+-
T Consensus 204 ~----~r~~~~~~f~~g~--~~vLVaT~v 226 (431)
T 2v6i_A 204 K----TFESEYPKCKSEK--WDFVITTDI 226 (431)
T ss_dssp T----THHHHTTHHHHSC--CSEEEECGG
T ss_pred c----cHHHHHHhhcCCC--CeEEEECch
Confidence 7 6789999999997 567777775
No 66
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.92 E-value=1.3e-25 Score=228.89 Aligned_cols=252 Identities=13% Similarity=0.133 Sum_probs=167.8
Q ss_pred cceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCccc
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPI 221 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~ 221 (448)
....+..|+++++++|||||||++|++|+++.+.. .+.++||++||++|+.|+.+.+.. ..+....+....
T Consensus 14 ~~~~l~~~~~vlv~a~TGsGKT~~~~l~il~~~~~--~~~~~lvl~Ptr~La~Q~~~~l~g-------~~v~~~~~~~~~ 84 (459)
T 2z83_A 14 SPNMLRKRQMTVLDLHPGSGKTRKILPQIIKDAIQ--QRLRTAVLAPTRVVAAEMAEALRG-------LPVRYQTSAVQR 84 (459)
T ss_dssp -CGGGSTTCEEEECCCTTSCTTTTHHHHHHHHHHH--TTCCEEEEECSHHHHHHHHHHTTT-------SCEEECC-----
T ss_pred HHHHHhcCCcEEEECCCCCCHHHHHHHHHHHHHHh--CCCcEEEECchHHHHHHHHHHhcC-------ceEeEEeccccc
Confidence 33445668999999999999999999999987754 346899999999999998887762 222211111100
Q ss_pred HHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhH-----HHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 222 QKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK-----MLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 222 ~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~-----l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
. ......+.++|.+.+...+... ..++++++||+||||+ ++.. ++..... .++..|+++|||
T Consensus 85 ~------~t~~~~i~~~~~~~l~~~l~~~-~~l~~~~~iViDEaH~~~~~~~~~~-~~~~~~~-----~~~~~~~il~SA 151 (459)
T 2z83_A 85 E------HQGNEIVDVMCHATLTHRLMSP-NRVPNYNLFVMDEAHFTDPASIAAR-GYIATKV-----ELGEAAAIFMTA 151 (459)
T ss_dssp ---------CCCSEEEEEHHHHHHHHHSC-C-CCCCSEEEESSTTCCSHHHHHHH-HHHHHHH-----HTTSCEEEEECS
T ss_pred C------CCCCcEEEEEchHHHHHHhhcc-ccccCCcEEEEECCccCCchhhHHH-HHHHHHh-----ccCCccEEEEEc
Confidence 0 1112457788988887766654 4578999999999998 4443 4433322 236789999999
Q ss_pred cCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHh
Q psy1548 297 TLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE 376 (448)
Q Consensus 297 T~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~ 376 (448)
|++..+..+... ..|....... .+. .+...+..++... .+++||||++++.|+.+++.|++
T Consensus 152 T~~~~~~~~~~~--~~pi~~~~~~---------------~~~-~~~~~~~~~l~~~-~~~~LVF~~s~~~~~~l~~~L~~ 212 (459)
T 2z83_A 152 TPPGTTDPFPDS--NAPIHDLQDE---------------IPD-RAWSSGYEWITEY-AGKTVWFVASVKMGNEIAMCLQR 212 (459)
T ss_dssp SCTTCCCSSCCC--SSCEEEEECC---------------CCS-SCCSSCCHHHHHC-CSCEEEECSCHHHHHHHHHHHHH
T ss_pred CCCcchhhhccC--CCCeEEeccc---------------CCc-chhHHHHHHHHhc-CCCEEEEeCChHHHHHHHHHHHh
Confidence 999775333221 2333221110 000 0001112223333 57999999999999999999999
Q ss_pred CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCC------------------------
Q psy1548 377 QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSI------------------------ 432 (448)
Q Consensus 377 ~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~------------------------ 432 (448)
.|+.+..+||+ +|.++++.|++|+ ..|+++|+....+ ++++.
T Consensus 213 ~g~~v~~lh~~----~R~~~~~~f~~g~--~~iLVaT~v~~~G--------iDip~~~VI~~G~~~~~~~~~~~~~~~~~ 278 (459)
T 2z83_A 213 AGKKVIQLNRK----SYDTEYPKCKNGD--WDFVITTDISEMG--------ANFGASRVIDCRKSVKPTILEEGEGRVIL 278 (459)
T ss_dssp TTCCEEEESTT----CCCCCGGGSSSCC--CSEEEESSCC-----------CCCSCSEEEECCEECCEEEECSSSCEEEE
T ss_pred cCCcEEecCHH----HHHHHHhhccCCC--ceEEEECChHHhC--------eecCCCEEEECCccccccccccccccccc
Confidence 99999999995 7889999999987 5677888754333 33332
Q ss_pred -CCCCccccccccccCC
Q psy1548 433 -SELPDEIDLSTYIEGR 448 (448)
Q Consensus 433 -~~~p~~~~~~~~~~~~ 448 (448)
.+.|.+...+.++.||
T Consensus 279 ~~d~p~s~~~~~QR~GR 295 (459)
T 2z83_A 279 GNPSPITSASAAQRRGR 295 (459)
T ss_dssp CSCEECCHHHHHHHHTT
T ss_pred ccCCCCCHHHHHHhccc
Confidence 3467777778888887
No 67
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.90 E-value=5.3e-24 Score=224.61 Aligned_cols=231 Identities=15% Similarity=0.092 Sum_probs=163.3
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKD 224 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~ 224 (448)
..+.|++++++||||||||+. ++..+...+ ..+|++||++||.|+++.+... ++++..++|+......
T Consensus 151 r~l~rk~vlv~apTGSGKT~~----al~~l~~~~---~gl~l~PtR~LA~Qi~~~l~~~-----g~~v~lltG~~~~iv~ 218 (677)
T 3rc3_A 151 RAMQRKIIFHSGPTNSGKTYH----AIQKYFSAK---SGVYCGPLKLLAHEIFEKSNAA-----GVPCDLVTGEERVTVQ 218 (677)
T ss_dssp HTSCCEEEEEECCTTSSHHHH----HHHHHHHSS---SEEEEESSHHHHHHHHHHHHHT-----TCCEEEECSSCEECCS
T ss_pred HhcCCCEEEEEcCCCCCHHHH----HHHHHHhcC---CeEEEeCHHHHHHHHHHHHHhc-----CCcEEEEECCeeEEec
Confidence 456789999999999999983 333333332 3599999999999999998775 6788888888654110
Q ss_pred HHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCC-CCCeEEEEeccCCccHH
Q psy1548 225 EEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIR 303 (448)
Q Consensus 225 ~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~-~~~q~i~~SAT~~~~~~ 303 (448)
-.....+++++|++.+. ....++++||||||++.+. ++...+..++..++ ...+++++|||. +.+.
T Consensus 219 ---TpGr~~~il~~T~e~~~--------l~~~v~lvVIDEaH~l~d~-~~g~~~~~~l~~l~~~~i~il~~SAT~-~~i~ 285 (677)
T 3rc3_A 219 ---PNGKQASHVSCTVEMCS--------VTTPYEVAVIDEIQMIRDP-ARGWAWTRALLGLCAEEVHLCGEPAAI-DLVM 285 (677)
T ss_dssp ---TTCCCCSEEEEEGGGCC--------SSSCEEEEEECSGGGGGCT-TTHHHHHHHHHHCCEEEEEEEECGGGH-HHHH
T ss_pred ---CCCcccceeEecHhHhh--------hcccCCEEEEecceecCCc-cchHHHHHHHHccCccceEEEeccchH-HHHH
Confidence 00012578888886532 2467899999999999887 89999999988887 678999999995 3344
Q ss_pred HHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEE
Q psy1548 304 PVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383 (448)
Q Consensus 304 ~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~ 383 (448)
.+.... ..+..+..... ...... ... .+ ..+.... ...||||+++++++.+++.|++.|+.+..
T Consensus 286 ~l~~~~-~~~~~v~~~~r----~~~l~~----~~~-----~l-~~l~~~~-~g~iIf~~s~~~ie~la~~L~~~g~~v~~ 349 (677)
T 3rc3_A 286 ELMYTT-GEEVEVRDYKR----LTPISV----LDH-----AL-ESLDNLR-PGDCIVCFSKNDIYSVSRQIEIRGLESAV 349 (677)
T ss_dssp HHHHHH-TCCEEEEECCC----SSCEEE----CSS-----CC-CSGGGCC-TTEEEECSSHHHHHHHHHHHHHTTCCCEE
T ss_pred HHHHhc-CCceEEEEeee----cchHHH----HHH-----HH-HHHHhcC-CCCEEEEcCHHHHHHHHHHHHhcCCCeee
Confidence 444433 33443322111 011100 000 00 1122223 34589999999999999999999999999
Q ss_pred EeCCCCHHHHHHHHHHHhcCCCceEEEEecChh
Q psy1548 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDEN 416 (448)
Q Consensus 384 lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~ 416 (448)
+||+|++++|.++++.|++++....|.++|+..
T Consensus 350 lHG~L~~~~R~~~~~~F~~~~g~~~VLVATdi~ 382 (677)
T 3rc3_A 350 IYGSLPPGTKLAQAKKFNDPNDPCKILVATDAI 382 (677)
T ss_dssp ECTTSCHHHHHHHHHHHHCTTSSCCEEEECGGG
T ss_pred eeccCCHHHHHHHHHHHHccCCCeEEEEeCcHH
Confidence 999999999999999999944446788887753
No 68
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=99.89 E-value=3e-23 Score=214.08 Aligned_cols=295 Identities=15% Similarity=0.172 Sum_probs=184.1
Q ss_pred CCchhhhhhhccccccceee----eeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 127 EDSDTYLHRVARAGRFGTKA----VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~----~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
..+++||.+ +++.+ ..|+++++..+||+|||++++. ++..+.......++|||||+ .|+.|+.+.+++
T Consensus 36 ~~L~~~Q~~------~v~~l~~~~~~~~~~ilad~~GlGKT~~ai~-~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~ 107 (500)
T 1z63_A 36 ANLRPYQIK------GFSWMRFMNKLGFGICLADDMGLGKTLQTIA-VFSDAKKENELTPSLVICPL-SVLKNWEEELSK 107 (500)
T ss_dssp SCCCHHHHH------HHHHHHHHHHTTCCEEECCCTTSCHHHHHHH-HHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHH
T ss_pred ccchHHHHH------HHHHHHHHhhCCCCEEEEeCCCCcHHHHHHH-HHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHH
Confidence 446888999 77655 3478999999999999998654 44444433444589999995 688999999999
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
+.. +.++..+.|+.... ....++|+|+|++.+..... +....++++|+||||++.+. . ......+
T Consensus 108 ~~~---~~~v~~~~g~~~~~------~~~~~~ivi~t~~~l~~~~~---l~~~~~~~vIvDEaH~~kn~-~--~~~~~~l 172 (500)
T 1z63_A 108 FAP---HLRFAVFHEDRSKI------KLEDYDIILTTYAVLLRDTR---LKEVEWKYIVIDEAQNIKNP-Q--TKIFKAV 172 (500)
T ss_dssp HCT---TSCEEECSSSTTSC------CGGGSSEEEEEHHHHTTCHH---HHTCCEEEEEEETGGGGSCT-T--SHHHHHH
T ss_pred HCC---CceEEEEecCchhc------cccCCcEEEeeHHHHhccch---hcCCCcCEEEEeCccccCCH-h--HHHHHHH
Confidence 873 56777766665321 11237899999999865433 33456789999999998654 2 2233444
Q ss_pred HhCCCCCeEEEEeccCCc-cHHHH---H---------------------------------HHhcCCCeEEEEcCcc---
Q psy1548 283 RSSPHTKQVMMFSATLSK-EIRPV---C---------------------------------KKFMHDPMEVYVDDEA--- 322 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT~~~-~~~~~---~---------------------------------~~~l~~~~~i~~~~~~--- 322 (448)
..++ ..+.+++|||+.. ...++ + ..++ .|..+......
T Consensus 173 ~~l~-~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l-~~~~lrr~k~~~~~ 250 (500)
T 1z63_A 173 KELK-SKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAII-SPFILRRTKYDKAI 250 (500)
T ss_dssp HTSC-EEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHH-TTTEECCCTTCHHH
T ss_pred Hhhc-cCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHH-hhHeeeecccccch
Confidence 4453 4568999999743 22221 1 1111 12222111100
Q ss_pred cccccceeEEEEEcC---------------------------------------------------------cchHHHHH
Q psy1548 323 KLTLHGLQQHYVKLK---------------------------------------------------------ENEKNKKL 345 (448)
Q Consensus 323 ~~~~~~i~~~~~~~~---------------------------------------------------------~~~k~~~L 345 (448)
....+......+.++ ...|...+
T Consensus 251 ~~~lp~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l 330 (500)
T 1z63_A 251 INDLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRT 330 (500)
T ss_dssp HTTSCSEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHH
T ss_pred hhcCCCCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHH
Confidence 001111111111111 12355555
Q ss_pred HHHHhhC--CCCeEEEEECccHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHH
Q psy1548 346 FELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQ-NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILN 422 (448)
Q Consensus 346 ~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~-g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~ 422 (448)
.+++... .+.++||||++...++.++..|.+. |+++..+||+++..+|.+++++|+++.....+.++++....++
T Consensus 331 ~~~l~~~~~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Gl-- 408 (500)
T 1z63_A 331 MEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGI-- 408 (500)
T ss_dssp HHHHHHHHTTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCC--
T ss_pred HHHHHHHHccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCC--
Confidence 6666543 5679999999999999999999885 9999999999999999999999999853323444444322221
Q ss_pred HHHHHhcCCCCCCCccccccccccCC
Q psy1548 423 NVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 423 ~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
++...-.+-+.+.|-+...+.|+.||
T Consensus 409 nl~~~~~vi~~d~~~~~~~~~Q~~gR 434 (500)
T 1z63_A 409 NLTSANRVIHFDRWWNPAVEDQATDR 434 (500)
T ss_dssp CCTTCSEEEESSCCSCC---CHHHHT
T ss_pred chhhCCEEEEeCCCCCcchHHHHHHH
Confidence 22222223445556666667777776
No 69
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=99.88 E-value=1e-23 Score=232.53 Aligned_cols=310 Identities=17% Similarity=0.135 Sum_probs=196.5
Q ss_pred CCCCchhhhhhhccccccceeeee--CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVL--GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~--g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
.+..+++||.+ ++..++. +.++|++++||+|||++++..+...+..+. ..++|||||+ .|+.|+...+.+
T Consensus 150 ~~~~LrpyQ~e------av~~~l~~~~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~-~~rvLIVvP~-sLl~Qw~~E~~~ 221 (968)
T 3dmq_A 150 QRTSLIPHQLN------IAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGA-AERVLIIVPE-TLQHQWLVEMLR 221 (968)
T ss_dssp CSSCCCHHHHH------HHHHHHHSSSCEEEECCCTTSCHHHHHHHHHHHHHHTSS-CCCEEEECCT-TTHHHHHHHHHH
T ss_pred CCCCCcHHHHH------HHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHHHhCC-CCeEEEEeCH-HHHHHHHHHHHH
Confidence 34556788999 7766665 458999999999999998777766654443 3479999999 999999988866
Q ss_pred hhccCCCceEEEEEcCcccHHhHHH-HhcCCCcEEEEcHHHHHHHHHC-CCCcCCCeeEEEecchhHHHhhhh-hHHHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEY-LKTHNPQIVVGTPGRILALVRN-KKLNLSLLKHFILDECDKMLEQLE-MRRDVQ 279 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~-l~~~~~~IlV~Tp~~l~~~l~~-~~~~~~~i~~lViDEah~l~~~~~-~~~~~~ 279 (448)
.. ++++..+.|+......... ......+|+|+|++.+...... ..+...+++++|+||||++..... ....+.
T Consensus 222 ~f----~l~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~~ 297 (968)
T 3dmq_A 222 RF----NLRFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQRLEHLCEAEWDLLVVDEAHHLVWSEDAPSREYQ 297 (968)
T ss_dssp HS----CCCCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTTTHHHHTSCCCEEEECCSSCCCCBTTBCCHHHH
T ss_pred Hh----CCCEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHHHHHhhhcCCCEEEehhhHhhcCCCCcchHHHH
Confidence 55 4555555443321110000 0111368999999987532111 113345788999999999864311 111122
Q ss_pred HHHHhCCCCCeEEEEeccCCc----cHHHHHHHhcCC-------------------------------------------
Q psy1548 280 EIFRSSPHTKQVMMFSATLSK----EIRPVCKKFMHD------------------------------------------- 312 (448)
Q Consensus 280 ~i~~~l~~~~q~i~~SAT~~~----~~~~~~~~~l~~------------------------------------------- 312 (448)
.+........+++++|||+.. ++..++......
T Consensus 298 ~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~l 377 (968)
T 3dmq_A 298 AIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEMI 377 (968)
T ss_dssp HHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTTT
T ss_pred HHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHHh
Confidence 222222244568999999732 111111110000
Q ss_pred -------------------------------------CeEEEEcCc--ccccccceeEEE--------------------
Q psy1548 313 -------------------------------------PMEVYVDDE--AKLTLHGLQQHY-------------------- 333 (448)
Q Consensus 313 -------------------------------------~~~i~~~~~--~~~~~~~i~~~~-------------------- 333 (448)
...+..... ............
T Consensus 378 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~~ 457 (968)
T 3dmq_A 378 GEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGAR 457 (968)
T ss_dssp CTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTCC
T ss_pred cchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhhh
Confidence 000000000 000000000000
Q ss_pred -------------------------EEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHh-CCCcEEEEeCC
Q psy1548 334 -------------------------VKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSE-QNFPAVSIHRG 387 (448)
Q Consensus 334 -------------------------~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~-~g~~~~~lh~~ 387 (448)
..+....|...|..++....++++||||+++..++.++..|++ .|+++..+||+
T Consensus 458 ~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~lhG~ 537 (968)
T 3dmq_A 458 KSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEG 537 (968)
T ss_dssp SSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHTSSSCCCEECSSTHHHHHHHHHHHTTTCCCEEEECTT
T ss_pred hhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhCCCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEEEeCC
Confidence 1223446889999999888888999999999999999999995 59999999999
Q ss_pred CCHHHHHHHHHHHhcCCCceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 388 MTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 388 ~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|++.+|.++++.|++|+.++.|+++|+....++ ++...-.+-+.+.|.+...+.++.||
T Consensus 538 ~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~Gl--Dl~~~~~VI~~d~p~~~~~~~Q~~GR 596 (968)
T 3dmq_A 538 MSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGR--NFQFASHMVMFDLPFNPDLLEQRIGR 596 (968)
T ss_dssp SCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSS--CCTTCCEEECSSCCSSHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhCCCCcccEEEecchhhcCC--CcccCcEEEEecCCCCHHHHHHHhhc
Confidence 999999999999999987788888886533332 33333334456667667777777776
No 70
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.88 E-value=4.1e-23 Score=188.61 Aligned_cols=160 Identities=20% Similarity=0.243 Sum_probs=116.2
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc---CCCeEEEEeeccHHHHHH-HHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTRELAFQ-ISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~Pt~~L~~q-~~~~~~~~ 203 (448)
..++||.+ +++.++.|+++++.+|||+|||++++++++..+... ..+.++||++|+++|+.| +.+.+..+
T Consensus 33 ~l~~~Q~~------~i~~~~~~~~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~~~ 106 (216)
T 3b6e_A 33 QLRPYQME------VAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 106 (216)
T ss_dssp CCCHHHHH------HHHHHHTTCCEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHHHH
T ss_pred CchHHHHH------HHHHHhcCCCEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHHHH
Confidence 34555999 999999999999999999999999999998776442 235689999999999999 77888888
Q ss_pred hccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC------CcCCCeeEEEecchhHHHhhhhhHHH
Q psy1548 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK------LNLSLLKHFILDECDKMLEQLEMRRD 277 (448)
Q Consensus 204 ~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~------~~~~~i~~lViDEah~l~~~~~~~~~ 277 (448)
... ++++..+.|+.........+... ++|+|+||+++...+.... ..+.+++++|+||||++.+. ++...
T Consensus 107 ~~~--~~~v~~~~g~~~~~~~~~~~~~~-~~i~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iIiDEah~~~~~-~~~~~ 182 (216)
T 3b6e_A 107 LKK--WYRVIGLSGDTQLKISFPEVVKS-CDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKE-AVYNN 182 (216)
T ss_dssp HTT--TSCEEECCC---CCCCHHHHHHH-CSEEEEEHHHHHHHHHC-------CCCGGGCSEEEETTC--------CHHH
T ss_pred hcc--CceEEEEeCCcccchhHHhhccC-CCEEEECHHHHHHHHhccCcccccccchhcccEEEEECchhhccC-CcHHH
Confidence 754 57888888887655544444443 7999999999999887643 56788999999999999775 45444
Q ss_pred HH-HHHHhC-------------CCCCeEEEEecc
Q psy1548 278 VQ-EIFRSS-------------PHTKQVMMFSAT 297 (448)
Q Consensus 278 ~~-~i~~~l-------------~~~~q~i~~SAT 297 (448)
+. .++... .+..+++++|||
T Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 183 IMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 43 322211 156799999998
No 71
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.87 E-value=1e-21 Score=182.40 Aligned_cols=169 Identities=15% Similarity=0.218 Sum_probs=126.4
Q ss_pred CCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCC--CeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 127 EDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS--NVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~--~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.++..+|.+ +++.+..|+++++.||||||||.++.++++........ +.++++++|+++|+.|+.+.+....
T Consensus 60 ~p~~~~q~~------~i~~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~ 133 (235)
T 3llm_A 60 LPVKKFESE------ILEAISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFER 133 (235)
T ss_dssp SGGGGGHHH------HHHHHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTT
T ss_pred CChHHHHHH------HHHHHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHh
Confidence 345666999 99999999999999999999999999998886654432 4589999999999999988877655
Q ss_pred ccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHH-HhhhhhH-HHHHHHH
Q psy1548 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM-LEQLEMR-RDVQEIF 282 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l-~~~~~~~-~~~~~i~ 282 (448)
....+..++.-...... .....++|+|+||+++.+++.. .+++++++|+||||.+ ++. ++. ..+..++
T Consensus 134 ~~~~~~~~g~~~~~~~~------~~~~~~~Ivv~Tpg~l~~~l~~---~l~~~~~lVlDEah~~~~~~-~~~~~~l~~i~ 203 (235)
T 3llm_A 134 GEEPGKSCGYSVRFESI------LPRPHASIMFCTVGVLLRKLEA---GIRGISHVIVDEIHERDINT-DFLLVVLRDVV 203 (235)
T ss_dssp TCCTTSSEEEEETTEEE------CCCSSSEEEEEEHHHHHHHHHH---CCTTCCEEEECCTTSCCHHH-HHHHHHHHHHH
T ss_pred ccccCceEEEeechhhc------cCCCCCeEEEECHHHHHHHHHh---hhcCCcEEEEECCccCCcch-HHHHHHHHHHH
Confidence 43224444433222111 1112478999999999999876 3789999999999986 565 666 4666666
Q ss_pred HhCCCCCeEEEEeccCCccHHHHHHHhcCCCe
Q psy1548 283 RSSPHTKQVMMFSATLSKEIRPVCKKFMHDPM 314 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT~~~~~~~~~~~~l~~~~ 314 (448)
... ++.|+++||||++.+. +.+.+...|.
T Consensus 204 ~~~-~~~~~il~SAT~~~~~--~~~~~~~~pv 232 (235)
T 3llm_A 204 QAY-PEVRIVLMSATIDTSM--FCEYFFNCPI 232 (235)
T ss_dssp HHC-TTSEEEEEECSSCCHH--HHHHTTSCCC
T ss_pred hhC-CCCeEEEEecCCCHHH--HHHHcCCCCE
Confidence 665 4789999999999775 5555555554
No 72
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=99.86 E-value=3.4e-21 Score=211.41 Aligned_cols=153 Identities=19% Similarity=0.186 Sum_probs=113.5
Q ss_pred chhhhhhhccccccceeeee--------------CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHH
Q psy1548 129 SDTYLHRVARAGRFGTKAVL--------------GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 194 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~--------------g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 194 (448)
.++||.+ +++.++. +++++++++||||||+++ ++++..+...+...++|||+|+++|+.
T Consensus 272 ~R~~Q~~------AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~-~~l~~ll~~~~~~~rvLvlvpr~eL~~ 344 (1038)
T 2w00_A 272 MRPYQIA------ATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTS-FKAARLATELDFIDKVFFVVDRKDLDY 344 (1038)
T ss_dssp CCHHHHH------HHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHH-HHHHHHHTTCTTCCEEEEEECGGGCCH
T ss_pred CCHHHHH------HHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHH-HHHHHHHHhcCCCceEEEEeCcHHHHH
Confidence 4566999 8877664 378999999999999997 666665544344469999999999999
Q ss_pred HHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCC--CcCCCeeEEEecchhHHHhhh
Q psy1548 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK--LNLSLLKHFILDECDKMLEQL 272 (448)
Q Consensus 195 q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~--~~~~~i~~lViDEah~l~~~~ 272 (448)
|+.+.+..+.... +.++.+.......+....++|+|+||+++..++.... ..+....+||+||||++...
T Consensus 345 Q~~~~f~~f~~~~-------v~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~~~~~~~~~~lvIiDEAHrs~~~- 416 (1038)
T 2w00_A 345 QTMKEYQRFSPDS-------VNGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAESDLPVYNQQVVFIFDECHRSQFG- 416 (1038)
T ss_dssp HHHHHHHTTSTTC-------SSSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCCCCGGGGSCEEEEEESCCTTHHH-
T ss_pred HHHHHHHHhcccc-------cccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhcccchhccccccEEEEEccchhcch-
Confidence 9999998876421 1244444445555554458999999999998876432 23567889999999997653
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEeccCCc
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSATLSK 300 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SAT~~~ 300 (448)
+ .+..+...+| +.++++||||+..
T Consensus 417 ~---~~~~I~~~~p-~a~~lgfTATP~~ 440 (1038)
T 2w00_A 417 E---AQKNLKKKFK-RYYQFGFTGTPIF 440 (1038)
T ss_dssp H---HHHHHHHHCS-SEEEEEEESSCCC
T ss_pred H---HHHHHHHhCC-cccEEEEeCCccc
Confidence 3 3455666675 4789999999864
No 73
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.85 E-value=4.1e-20 Score=194.20 Aligned_cols=128 Identities=23% Similarity=0.168 Sum_probs=109.5
Q ss_pred ccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
+ .|+++ |.. ++|.++.|+ +.+++||+|||++|.+|++..... +.+++|++||++||.|.++.+..
T Consensus 78 ~-~Pt~V---Q~~------~ip~LlqG~--IaeakTGeGKTLvf~Lp~~L~aL~---G~qv~VvTPTreLA~Qdae~m~~ 142 (997)
T 2ipc_A 78 M-RHFDV---QLI------GGAVLHEGK--IAEMKTGEGKTLVATLAVALNALT---GKGVHVVTVNDYLARRDAEWMGP 142 (997)
T ss_dssp C-CCCHH---HHH------HHHHHHTTS--EEECCSTHHHHHHHHHHHHHHHTT---CSCCEEEESSHHHHHHHHHHHHH
T ss_pred C-CCcHH---HHh------hcccccCCc--eeeccCCCchHHHHHHHHHHHHHh---CCCEEEEeCCHHHHHHHHHHHHH
Confidence 7 89999 999 999999998 999999999999999999644332 34799999999999999999999
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHH-HHHHHCC------CCcCC---CeeEEEecchhHHH
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRI-LALVRNK------KLNLS---LLKHFILDECDKML 269 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l-~~~l~~~------~~~~~---~i~~lViDEah~l~ 269 (448)
+...+ ++++++++|+.+..... ...+ ++|+||||+++ .+++..+ .+.++ .+.++|+||+|.|+
T Consensus 143 l~~~l-GLsv~~i~Gg~~~~~r~--~ay~-~DIvyGTpgrlgfDyLrd~m~~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 143 VYRGL-GLSVGVIQHASTPAERR--KAYL-ADVTYVTNSELGFDYLRDNMAISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp HHHTT-TCCEEECCTTCCHHHHH--HHHT-SSEEEEEHHHHHHHHHHHTSCSSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred HHHhc-CCeEEEEeCCCCHHHHH--HHcC-CCEEEECchhhhhHHHHHhhhcchhhcccccCCCcceEEEechHHHH
Confidence 99998 99999999998744333 2233 89999999999 7888755 24567 89999999999987
No 74
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=99.84 E-value=4.1e-21 Score=208.49 Aligned_cols=272 Identities=14% Similarity=0.125 Sum_probs=177.4
Q ss_pred CCchhhhhhhccccccceeee----eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 127 EDSDTYLHRVARAGRFGTKAV----LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 127 ~~~~~yQ~~~~~~~~~~~~~~----~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
..+++||.+ ++..+. .|++.|++.+||+|||+.++..+...+........+||||| ..|+.|+.+.+.+
T Consensus 235 ~~Lr~yQ~e------gv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~ 307 (800)
T 3mwy_W 235 GELRDFQLT------GINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEK 307 (800)
T ss_dssp SCCCTHHHH------HHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHH
T ss_pred CCcCHHHHH------HHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHH
Confidence 457899999 776554 68999999999999999876665554444444457999999 6788999999998
Q ss_pred hhccCCCceEEEEEcCcccHHhHHHH-----------hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhh
Q psy1548 203 FSKYMSNIKVGVFFGGLPIQKDEEYL-----------KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271 (448)
Q Consensus 203 ~~~~~~~~~v~~~~g~~~~~~~~~~l-----------~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~ 271 (448)
+. |++++.++.|+.......... ....++|+|+|++.+...... +....+++||+||||++-..
T Consensus 308 ~~---p~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~~~~--l~~~~w~~vIvDEaH~lkn~ 382 (800)
T 3mwy_W 308 WA---PDLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKDRAE--LGSIKWQFMAVDEAHRLKNA 382 (800)
T ss_dssp HS---TTCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHTHHH--HHTSEEEEEEETTGGGGCCS
T ss_pred HC---CCceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhhHHH--HhcCCcceeehhhhhhhcCc
Confidence 87 477888888776544332221 123478999999998654321 22235789999999988442
Q ss_pred hhhHHHHHHHHHhCCCCCeEEEEeccCC-cc---HHHHHHHhcCC-----------------------------CeEEEE
Q psy1548 272 LEMRRDVQEIFRSSPHTKQVMMFSATLS-KE---IRPVCKKFMHD-----------------------------PMEVYV 318 (448)
Q Consensus 272 ~~~~~~~~~i~~~l~~~~q~i~~SAT~~-~~---~~~~~~~~l~~-----------------------------~~~i~~ 318 (448)
.......+..++ ....+++|||+- +. +..++..+... |..+.-
T Consensus 383 ---~s~~~~~l~~l~-~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR 458 (800)
T 3mwy_W 383 ---ESSLYESLNSFK-VANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRR 458 (800)
T ss_dssp ---SSHHHHHHTTSE-EEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEEC
T ss_pred ---hhHHHHHHHHhh-hccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhh
Confidence 223333444443 345688999962 22 22222222111 111110
Q ss_pred cCcc-cccccceeEEEEEcC------------------------------------------------------------
Q psy1548 319 DDEA-KLTLHGLQQHYVKLK------------------------------------------------------------ 337 (448)
Q Consensus 319 ~~~~-~~~~~~i~~~~~~~~------------------------------------------------------------ 337 (448)
.... ....+......+.+.
T Consensus 459 ~k~dv~~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 459 LKKDVEKSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp CGGGGTTTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred hHHhhhhccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 0000 000011111111110
Q ss_pred ---------------cchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHH
Q psy1548 338 ---------------ENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF 400 (448)
Q Consensus 338 ---------------~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F 400 (448)
...|...|..++... .+.++||||.....++.|...|...|+++..+||+++..+|.++++.|
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~F 618 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLKKDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDHF 618 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHTTTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHTT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHhhCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHh
Confidence 123566667777654 456999999999999999999999999999999999999999999999
Q ss_pred hcCCCceEEEEecC
Q psy1548 401 KDFHKGLAITFASD 414 (448)
Q Consensus 401 ~~g~~g~~I~~~t~ 414 (448)
+++..+.-+.++++
T Consensus 619 ~~~~~~~~v~LlSt 632 (800)
T 3mwy_W 619 NSPDSNDFVFLLST 632 (800)
T ss_dssp SSTTCSCCCEEEEH
T ss_pred hCCCCCceEEEEec
Confidence 99876543444433
No 75
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.83 E-value=2.4e-20 Score=178.00 Aligned_cols=153 Identities=15% Similarity=0.203 Sum_probs=120.8
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCC
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 208 (448)
.++||.+ +++.++.+++.++++|||+|||++++.++...+... ..++||++|+++|+.|+.+.++++....
T Consensus 114 l~~~Q~~------ai~~~l~~~~~ll~~~tGsGKT~~~~~~~~~~~~~~--~~~~lil~Pt~~L~~q~~~~l~~~~~~~- 184 (282)
T 1rif_A 114 PHWYQKD------AVFEGLVNRRRILNLPTSAGRSLIQALLARYYLENY--EGKILIIVPTTALTTQMADDFVDYRLFS- 184 (282)
T ss_dssp CCHHHHH------HHHHHHHHSEEEECCCTTSCHHHHHHHHHHHHHHHC--SSEEEEECSSHHHHHHHHHHHHHHTSCC-
T ss_pred ccHHHHH------HHHHHHhcCCeEEEcCCCCCcHHHHHHHHHHHHHcC--CCeEEEEECCHHHHHHHHHHHHHhcccc-
Confidence 3445999 999888888899999999999999988887766532 3389999999999999999999987654
Q ss_pred CceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCC
Q psy1548 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288 (448)
Q Consensus 209 ~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~ 288 (448)
...+..++++..... ......+|+|+||+.+.. .....+.+++++|+||||++.. ..+..++..+...
T Consensus 185 ~~~~~~~~~~~~~~~----~~~~~~~I~v~T~~~l~~---~~~~~~~~~~~vIiDEaH~~~~-----~~~~~il~~~~~~ 252 (282)
T 1rif_A 185 HAMIKKIGGGASKDD----KYKNDAPVVVGTWQTVVK---QPKEWFSQFGMMMNDECHLATG-----KSISSIISGLNNC 252 (282)
T ss_dssp GGGEEECSTTCSSTT----CCCTTCSEEEECHHHHTT---SCGGGGGGEEEEEEETGGGCCH-----HHHHHHTTTCTTC
T ss_pred cceEEEEeCCCcchh----hhccCCcEEEEchHHHHh---hHHHHHhhCCEEEEECCccCCc-----ccHHHHHHHhhcC
Confidence 677888888765432 111247999999987643 2334568899999999998864 2567777888778
Q ss_pred CeEEEEeccCCccH
Q psy1548 289 KQVMMFSATLSKEI 302 (448)
Q Consensus 289 ~q~i~~SAT~~~~~ 302 (448)
.+++++|||+++..
T Consensus 253 ~~~l~lSATp~~~~ 266 (282)
T 1rif_A 253 MFKFGLSGSLRDGK 266 (282)
T ss_dssp CEEEEECSSCCTTS
T ss_pred CeEEEEeCCCCCcc
Confidence 99999999998754
No 76
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=99.82 E-value=4e-19 Score=188.29 Aligned_cols=272 Identities=13% Similarity=0.072 Sum_probs=167.8
Q ss_pred Cchhhhhhhccccccceee---------eeCcceeeeccCCChhHHHHHHHHHHhhhccC----CCeEEEEeeccHHHHH
Q psy1548 128 DSDTYLHRVARAGRFGTKA---------VLGMDILCQAKSGMGKTAVFVLATLQQLETTD----SNVYVLVMCHTRELAF 194 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~---------~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~----~~~~~lil~Pt~~L~~ 194 (448)
.+++||.+ ++..+ ..++..|+..+||+|||+.++..+...+...+ ...++|||||+ .|+.
T Consensus 55 ~LrpyQ~~------gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~ 127 (644)
T 1z3i_X 55 VLRPHQRE------GVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVR 127 (644)
T ss_dssp TCCHHHHH------HHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHH
T ss_pred cccHHHHH------HHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHH
Confidence 46788999 66554 34578999999999999998766665544332 23469999997 7889
Q ss_pred HHHHHHHHhhccCCCceEEEEEcCcccHHh--HHHHhc-----CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhH
Q psy1548 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKD--EEYLKT-----HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267 (448)
Q Consensus 195 q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~--~~~l~~-----~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~ 267 (448)
|+.+++.++... .+.+..+.++...... ...... ...+|+|+|++.+.... ..+....++++|+||||+
T Consensus 128 qW~~E~~~~~~~--~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~~--~~l~~~~~~~vI~DEaH~ 203 (644)
T 1z3i_X 128 NWYNEVGKWLGG--RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLHA--EVLHKGKVGLVICDEGHR 203 (644)
T ss_dssp HHHHHHHHHHGG--GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHHT--TTTTTSCCCEEEETTGGG
T ss_pred HHHHHHHHHcCC--CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhhH--HHhhcCCccEEEEECcee
Confidence 999999998754 3566666666432211 111111 13689999999987543 334445678999999998
Q ss_pred HHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCcc----HHHHH---------------HHhc------------------
Q psy1548 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKE----IRPVC---------------KKFM------------------ 310 (448)
Q Consensus 268 l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~----~~~~~---------------~~~l------------------ 310 (448)
+-+. . ...... +..++ ....+++|||+-.+ +..++ +.|.
T Consensus 204 ikn~-~-~~~~~a-l~~l~-~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~ 279 (644)
T 1z3i_X 204 LKNS-D-NQTYLA-LNSMN-AQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAA 279 (644)
T ss_dssp CCTT-C-HHHHHH-HHHHC-CSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHH
T ss_pred cCCh-h-hHHHHH-HHhcc-cCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHH
Confidence 8553 1 222222 23333 45679999996321 11000 0000
Q ss_pred -----------CCCeEEEEcCcc-cccccceeEEEEEc------------------------------------------
Q psy1548 311 -----------HDPMEVYVDDEA-KLTLHGLQQHYVKL------------------------------------------ 336 (448)
Q Consensus 311 -----------~~~~~i~~~~~~-~~~~~~i~~~~~~~------------------------------------------ 336 (448)
-.|..+.-.... ....+......+.+
T Consensus 280 ~~~~~~~L~~~l~~~~lRR~k~~v~~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk~ 359 (644)
T 1z3i_X 280 GEQKLQELISIVNRCLIRRTSDILSKYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKKL 359 (644)
T ss_dssp HHHHHHHHHHHHHHHEECCCGGGGGGTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHhHhhhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHH
Confidence 000000000000 00000000111110
Q ss_pred ------------------------------------CcchHHHHHHHHHhh---CCCCeEEEEECccHHHHHHHHHHHhC
Q psy1548 337 ------------------------------------KENEKNKKLFELLDV---LEFNQVVIFVKSVTRCIALSTLLSEQ 377 (448)
Q Consensus 337 ------------------------------------~~~~k~~~L~~ll~~---~~~~~~IIF~~s~~~a~~l~~~L~~~ 377 (448)
....|...+..++.. ..+.++||||++...++.+...|...
T Consensus 360 c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~~ 439 (644)
T 1z3i_X 360 CNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRNR 439 (644)
T ss_dssp HHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHHC
Confidence 012344445454443 24679999999999999999999999
Q ss_pred CCcEEEEeCCCCHHHHHHHHHHHhcCCCce-EEEEecC
Q psy1548 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGL-AITFASD 414 (448)
Q Consensus 378 g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~-~I~~~t~ 414 (448)
|+.+..+||+++..+|.+++++|+++..+. .+++.+.
T Consensus 440 g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~ 477 (644)
T 1z3i_X 440 RYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSK 477 (644)
T ss_dssp TCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGG
T ss_pred CCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecc
Confidence 999999999999999999999999988654 3444443
No 77
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=4.3e-19 Score=183.42 Aligned_cols=296 Identities=16% Similarity=0.141 Sum_probs=203.1
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|..+ |.. ..-.+..|+ |....||+|||+++.+|++-.... |..+.|++|+..||.|-.+++..+.
T Consensus 75 r~~dv---Qli------gg~~L~~G~--iaEM~TGEGKTLva~lp~~lnAL~---G~~vhVvT~ndyLA~rdae~m~~l~ 140 (822)
T 3jux_A 75 RPFDV---QVM------GGIALHEGK--VAEMKTGEGKTLAATMPIYLNALI---GKGVHLVTVNDYLARRDALWMGPVY 140 (822)
T ss_dssp CCCHH---HHH------HHHHHHTTC--EEECCTTSCHHHHTHHHHHHHHTT---SSCEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCcHH---HHH------HHHHHhCCC--hhhccCCCCccHHHHHHHHHHHhc---CCceEEEeccHHHHHhHHHHHHHHH
Confidence 57778 888 555556666 899999999999999998754433 3469999999999999999999999
Q ss_pred ccCCCceEEEEEcC--------------------------------------------------cccHHhHHHHhcCCCc
Q psy1548 205 KYMSNIKVGVFFGG--------------------------------------------------LPIQKDEEYLKTHNPQ 234 (448)
Q Consensus 205 ~~~~~~~v~~~~g~--------------------------------------------------~~~~~~~~~l~~~~~~ 234 (448)
..+ ++++++++.. .+........ .++
T Consensus 141 ~~L-glsvg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~err~aY---~~D 216 (822)
T 3jux_A 141 LFL-GLRVGVINSLGKSYEVVWKNPDLARKAIEENWSVWPDGFNGEVLKEESMNKEAVEAFQVELKEITRKEAY---LCD 216 (822)
T ss_dssp HHT-TCCEEEEETTTEEEEEEESSHHHHHHHHHTTCCSSCTTCCSSSCCGGGSCHHHHTTTCEECCBCCHHHHH---HSS
T ss_pred HHh-CCEEEEEcCCCcccccccccchhhhhhhcccccccccccccccccccccccccchhccccCCHHHHHHHh---cCC
Confidence 999 9999999982 1111222222 269
Q ss_pred EEEEcHHHH-HHHHHCC------CCcCCCeeEEEecchhHHHhh---------------hhhHHHHHHHHHhC-------
Q psy1548 235 IVVGTPGRI-LALVRNK------KLNLSLLKHFILDECDKMLEQ---------------LEMRRDVQEIFRSS------- 285 (448)
Q Consensus 235 IlV~Tp~~l-~~~l~~~------~~~~~~i~~lViDEah~l~~~---------------~~~~~~~~~i~~~l------- 285 (448)
|.+||..-+ .++|+.+ ..-...+.+.|+||+|.++=+ ......+..+.+.+
T Consensus 217 ItYgTn~EfgFDYLRDnm~~~~~~~vqR~~~~aIVDEvDSiLIDeArtPLiISg~~~~~~~~y~~~~~~v~~l~~~~dy~ 296 (822)
T 3jux_A 217 VTYGTNNEFGFDYLRDNLVLDYNDKVQRGHFYAIVDEADSVLIDEARTPLIISGPSKESPSVYRRFAQIAKKFVKDKDFT 296 (822)
T ss_dssp EEEEEHHHHHHHHHHHTSCSSTTSCCCCCCCEEEEETHHHHHTTGGGSCEEEECCCCSCHHHHHHHHHHTTSSCBTTTEE
T ss_pred CEEccCcchhhHhHHhhccCCHHHhccCCCCeEEEecccceeecCCCCCceeeCCCCCccHHHHHHHHHHHhcCcCCcEE
Confidence 999999887 3455432 223466789999999977532 00111111111100
Q ss_pred -------------------------------------------------CCC----------------------------
Q psy1548 286 -------------------------------------------------PHT---------------------------- 288 (448)
Q Consensus 286 -------------------------------------------------~~~---------------------------- 288 (448)
..+
T Consensus 297 vdek~~~v~lTe~G~~~~E~~l~i~nly~~~n~~l~~~i~~AL~A~~l~~~d~dYiV~dg~V~iVDe~TGR~m~grr~s~ 376 (822)
T 3jux_A 297 VDEKARTIILTEEGVAKAEKIIGVENLYDPGNVSLLYHLINALKALHLFKKDVDYVVMNGEVIIVDEFTGRLLPGRRYSG 376 (822)
T ss_dssp ECCSSSCEEECHHHHHHHHHHHTCSCTTSGGGHHHHHHHHHHHHHHHHSTTTSSEEEETTEEEECSSSSCSCCCSCCCGG
T ss_pred EEcccCeEEECHHHHHHHHHHhCCccccchhhhHHHHHHHHHHHHHHHHcCCCcEEEECCEEEEEECCCCcCCCCCcCch
Confidence 000
Q ss_pred ---------------------------------CeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeE-EEE
Q psy1548 289 ---------------------------------KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ-HYV 334 (448)
Q Consensus 289 ---------------------------------~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~-~~~ 334 (448)
.++.+||+|+..+..++...|.-+ .+.+... .....+.+ ..+
T Consensus 377 GLHQaiEaKEgv~i~~e~~tla~IT~Qn~Fr~Y~kL~GMTGTa~te~~Ef~~iY~l~--vv~IPtn--kp~~R~d~~d~v 452 (822)
T 3jux_A 377 GLHQAIEAKEGVPIKEESITYATITFQNYFRMYEKLAGMTGTAKTEESEFVQVYGME--VVVIPTH--KPMIRKDHDDLV 452 (822)
T ss_dssp GHHHHHHHHHSSCCCCCCCEEEEECHHHHHTTSSEEEEEESSCGGGHHHHHHHSCCC--EEECCCS--SCCCCEECCCEE
T ss_pred HHHHHHHHHcCCCCCCCcchhHHHHHHHHHHHhhHHeEECCCCchHHHHHHHHhCCe--EEEECCC--CCcceeecCcEE
Confidence 257999999988877776666433 3333222 12222222 356
Q ss_pred EcCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEe
Q psy1548 335 KLKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFA 412 (448)
Q Consensus 335 ~~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~ 412 (448)
.....+|...+...+... .+.++||||+|++.++.++..|++.|+++..+||+..+.+|..+.+.|+.| .|+++
T Consensus 453 y~t~~eK~~al~~~I~~~~~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g----~VtVA 528 (822)
T 3jux_A 453 FRTQKEKYEKIVEEIEKRYKKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG----MVTIA 528 (822)
T ss_dssp ESSHHHHHHHHHHHHHHHHHHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT----CEEEE
T ss_pred EecHHHHHHHHHHHHHHHhhCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC----eEEEE
Confidence 677888999998888653 467899999999999999999999999999999996666666666666554 47888
Q ss_pred cChhhHHHHHHHH--------HHhcCCCCCCCccccccccccCC
Q psy1548 413 SDENDAKILNNVQ--------DRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 413 t~~~d~~~l~~i~--------~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|+-.-+++ +|. ..+.+-..++|++...+.++.||
T Consensus 529 TdmAgRGt--DI~lg~~V~~~GglhVInte~Pes~r~y~qriGR 570 (822)
T 3jux_A 529 TNMAGRGT--DIKLGPGVAELGGLCIIGTERHESRRIDNQLRGR 570 (822)
T ss_dssp ETTTTTTC--CCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTT
T ss_pred cchhhCCc--CccCCcchhhcCCCEEEecCCCCCHHHHHHhhCc
Confidence 76432222 221 22345567888888888888887
No 78
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.73 E-value=6.6e-18 Score=156.77 Aligned_cols=142 Identities=20% Similarity=0.151 Sum_probs=108.8
Q ss_pred cCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 124 DMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 124 ~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
..+...++||.+ +++.++.++++++++|||+|||.+++.++... +.+++|++|+++|+.|+.+.+.++
T Consensus 89 ~~~~~l~~~Q~~------ai~~~~~~~~~ll~~~tG~GKT~~a~~~~~~~------~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 89 DAEISLRDYQEK------ALERWLVDKRGCIVLPTGSGKTHVAMAAINEL------STPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCHHHHH------HHHHHTTTSEEEEEESSSTTHHHHHHHHHHHS------CSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cCCCCcCHHHHH------HHHHHHhCCCEEEEeCCCCCHHHHHHHHHHHc------CCCEEEEeCCHHHHHHHHHHHHhC
Confidence 334456777999 99888888999999999999999988877653 347999999999999998888873
Q ss_pred hccCCCce-EEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHH
Q psy1548 204 SKYMSNIK-VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIF 282 (448)
Q Consensus 204 ~~~~~~~~-v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~ 282 (448)
+++ +..+.|+... ..+|+|+|++.+...... ...+++++|+||||++.+. .+. .++
T Consensus 157 -----~~~~v~~~~g~~~~----------~~~i~v~T~~~l~~~~~~---~~~~~~llIiDEaH~l~~~-~~~----~i~ 213 (237)
T 2fz4_A 157 -----GEEYVGEFSGRIKE----------LKPLTVSTYDSAYVNAEK---LGNRFMLLIFDEVHHLPAE-SYV----QIA 213 (237)
T ss_dssp -----CGGGEEEESSSCBC----------CCSEEEEEHHHHHHTHHH---HTTTCSEEEEECSSCCCTT-THH----HHH
T ss_pred -----CCCeEEEEeCCCCC----------cCCEEEEeHHHHHhhHHH---hcccCCEEEEECCccCCCh-HHH----HHH
Confidence 566 7777776532 368999999998765542 1245889999999998765 443 344
Q ss_pred HhCCCCCeEEEEeccCCcc
Q psy1548 283 RSSPHTKQVMMFSATLSKE 301 (448)
Q Consensus 283 ~~l~~~~q~i~~SAT~~~~ 301 (448)
..++ ..+++++|||+++.
T Consensus 214 ~~~~-~~~~l~LSATp~r~ 231 (237)
T 2fz4_A 214 QMSI-APFRLGLTATFERE 231 (237)
T ss_dssp HTCC-CSEEEEEEESCC--
T ss_pred Hhcc-CCEEEEEecCCCCC
Confidence 5554 67889999998754
No 79
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.62 E-value=1.8e-15 Score=160.29 Aligned_cols=73 Identities=15% Similarity=0.142 Sum_probs=59.0
Q ss_pred hHHHHHHHHHhh-C-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecC
Q psy1548 340 EKNKKLFELLDV-L-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414 (448)
Q Consensus 340 ~k~~~L~~ll~~-~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~ 414 (448)
.+...+...+.. . .+.++||||+|+..|+.+++.|.+.|+++..+||+|++.+|.++++.|++|+. .|+++|+
T Consensus 423 ~~~~~Ll~~l~~~~~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g~~--~VLvaT~ 497 (664)
T 1c4o_A 423 NQILDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLGHY--DCLVGIN 497 (664)
T ss_dssp THHHHHHHHHHHHHHTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTTSC--SEEEESC
T ss_pred chHHHHHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcCCc--eEEEccC
Confidence 344444444432 2 46799999999999999999999999999999999999999999999999883 4555544
No 80
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.60 E-value=1.6e-14 Score=127.04 Aligned_cols=123 Identities=81% Similarity=1.231 Sum_probs=106.3
Q ss_pred ccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-
Q psy1548 326 LHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH- 404 (448)
Q Consensus 326 ~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~- 404 (448)
+.++.|+++.++..+|...|..+++....+++||||+++..|+.++..|.+.|+++..+||+|++.+|..+++.|++|+
T Consensus 3 ~~~i~q~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g~~ 82 (172)
T 1t5i_A 3 LHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQR 82 (172)
T ss_dssp --CCEEEEEECCGGGHHHHHHHHHHHSCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred cCCeEEEEEECChHHHHHHHHHHHHhCCCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCCCC
Confidence 4679999999999999999999999988889999999999999999999999999999999999999999999999988
Q ss_pred ---------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCCccc
Q psy1548 405 ---------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439 (448)
Q Consensus 405 ---------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~ 439 (448)
.|.+++|+++.++...++.+++.++..+.++|.++
T Consensus 83 ~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 162 (172)
T 1t5i_A 83 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEI 162 (172)
T ss_dssp SEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTGGGCCCEEEEEECSHHHHHHHHHHHHHHCCCEEECC---
T ss_pred cEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhcccccCCCCcEEEEEEcChhHHHHHHHHHHHHhcchhhCChhh
Confidence 78999999988788999999999999999999999
Q ss_pred cccccccCC
Q psy1548 440 DLSTYIEGR 448 (448)
Q Consensus 440 ~~~~~~~~~ 448 (448)
+...+++++
T Consensus 163 ~~~~~~~~~ 171 (172)
T 1t5i_A 163 DISSYIEQT 171 (172)
T ss_dssp ------CCC
T ss_pred chhhccccc
Confidence 988777653
No 81
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.56 E-value=2.2e-13 Score=144.34 Aligned_cols=109 Identities=14% Similarity=0.081 Sum_probs=72.8
Q ss_pred CCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHh-hC-CCCeEEEEECcc
Q psy1548 287 HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLD-VL-EFNQVVIFVKSV 364 (448)
Q Consensus 287 ~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~-~~-~~~~~IIF~~s~ 364 (448)
...|++++|||+++..... ............ ....+. ..+ .....+...+...+. .. .+.++||||+|+
T Consensus 385 ~~~q~i~~SAT~~~~~~~~----~~~~~~~~~r~~-~l~~p~---i~v-~~~~~~~~~Ll~~l~~~~~~~~~vlVf~~t~ 455 (661)
T 2d7d_A 385 HMHNIVYVSATPGPYEIEH----TDEMVEQIIRPT-GLLDPL---IDV-RPIEGQIDDLIGEIQARIERNERVLVTTLTK 455 (661)
T ss_dssp TCSEEEEECSSCCHHHHHH----CSSCEEECCCTT-CCCCCE---EEE-ECSTTHHHHHHHHHHHHHTTTCEEEEECSSH
T ss_pred cCCCEEEEecCCChhHHHh----hhCeeeeeeccc-CCCCCe---EEE-ecccchHHHHHHHHHHHHhcCCeEEEEECCH
Confidence 4679999999987653222 111122211111 011111 111 122234444444443 22 467999999999
Q ss_pred HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 365 ~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
..|+.+++.|++.|+++..+||+|++.+|.++++.|++|+
T Consensus 456 ~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g~ 495 (661)
T 2d7d_A 456 KMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLGK 495 (661)
T ss_dssp HHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcCC
Confidence 9999999999999999999999999999999999999997
No 82
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.53 E-value=6.2e-15 Score=153.47 Aligned_cols=131 Identities=13% Similarity=0.119 Sum_probs=97.0
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
+++|.++.++ ....+..|+++++++|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+.... +
T Consensus 5 r~~Q~~~~~~--v~~~l~~~~~~~~~a~TGtGKT~~~l~p~l~~------~~~v~i~~pt~~l~~q~~~~~~~l~~~~-~ 75 (551)
T 3crv_A 5 RDWQEKLKDK--VIEGLRNNFLVALNAPTGSGKTLFSLLVSLEV------KPKVLFVVRTHNEFYPIYRDLTKIREKR-N 75 (551)
T ss_dssp CHHHHHHHHH--HHHHHHTTCEEEEECCTTSSHHHHHHHHHHHH------CSEEEEEESSGGGHHHHHHHHTTCCCSS-C
T ss_pred CHHHHHHHHH--HHHHHHcCCcEEEECCCCccHHHHHHHHHHhC------CCeEEEEcCCHHHHHHHHHHHHHHhhhc-C
Confidence 4449984442 23455678999999999999999999999982 4589999999999999999999987776 7
Q ss_pred ceEEEEEcCccc---------------------------------HHhHH------------------HHhcCCCcEEEE
Q psy1548 210 IKVGVFFGGLPI---------------------------------QKDEE------------------YLKTHNPQIVVG 238 (448)
Q Consensus 210 ~~v~~~~g~~~~---------------------------------~~~~~------------------~l~~~~~~IlV~ 238 (448)
+++..+.|.... ..... .... .++|+|+
T Consensus 76 ~~~~~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~-~adIVV~ 154 (551)
T 3crv_A 76 ITFSFLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLY-KADVIAL 154 (551)
T ss_dssp CCEEECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGG-GCSEEEE
T ss_pred ccEEEEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhh-cCCEEEe
Confidence 888777663221 11111 1112 3799999
Q ss_pred cHHHHHHHHHCCCCcC-CCeeEEEecchhHHHh
Q psy1548 239 TPGRILALVRNKKLNL-SLLKHFILDECDKMLE 270 (448)
Q Consensus 239 Tp~~l~~~l~~~~~~~-~~i~~lViDEah~l~~ 270 (448)
|+..+.+...+..+.+ ....++||||||.+.+
T Consensus 155 ~~~~l~~~~~~~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 155 TYPYFFIDRYREFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp ETHHHHCHHHHTTSCCCSTTEEEEETTGGGGGG
T ss_pred CchHhcCHHHHHhcCCCcCCeEEEEecccchHH
Confidence 9999988654433332 4667899999998876
No 83
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.48 E-value=2.7e-13 Score=121.30 Aligned_cols=133 Identities=23% Similarity=0.281 Sum_probs=105.4
Q ss_pred HHhcCCCeEEEEcCcccccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeC
Q psy1548 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386 (448)
Q Consensus 307 ~~~l~~~~~i~~~~~~~~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~ 386 (448)
..++.+|..+.+... .....++.|.+..++...|...|.+++... ++++||||+++..++.++..|+..|+.+..+||
T Consensus 9 ~~~~~~p~~i~v~~~-~~~~~~i~q~~~~~~~~~K~~~L~~~l~~~-~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg 86 (191)
T 2p6n_A 9 SGVDLGTENLYFQSM-GAASLDVIQEVEYVKEEAKMVYLLECLQKT-PPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHG 86 (191)
T ss_dssp --------------------CCSEEEEEECCGGGHHHHHHHHHTTS-CSCEEEECSCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred ccccCCCEEEEECCC-CCCCcCceEEEEEcChHHHHHHHHHHHHhC-CCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeC
Confidence 357788988888766 456789999999999999999999999875 458999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHhcCC----------------------------------------------CceEEEEecChhhHHH
Q psy1548 387 GMTQEERLKKYQEFKDFH----------------------------------------------KGLAITFASDENDAKI 420 (448)
Q Consensus 387 ~~~~~eR~~~l~~F~~g~----------------------------------------------~g~~I~~~t~~~d~~~ 420 (448)
+|++.+|.++++.|++|+ .|.+++|++..++..+
T Consensus 87 ~~~~~~R~~~l~~F~~g~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~g~~g~~i~l~~~~~~~~~ 166 (191)
T 2p6n_A 87 GKDQEERTKAIEAFREGKKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCSGNTGIATTFINKACDESV 166 (191)
T ss_dssp TSCHHHHHHHHHHHHHTSCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC---CCEEEEEECTTSCHHH
T ss_pred CCCHHHHHHHHHHHhcCCCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccCCCCcEEEEEEcCchhHHH
Confidence 999999999999999998 7899999998767889
Q ss_pred HHHHHHHhcCCCCCCCccccc
Q psy1548 421 LNNVQDRFDVSISELPDEIDL 441 (448)
Q Consensus 421 l~~i~~~~~~~~~~~p~~~~~ 441 (448)
++.+++.++...+++|.++..
T Consensus 167 ~~~l~~~l~~~~~~~p~~l~~ 187 (191)
T 2p6n_A 167 LMDLKALLLEAKQKVPPVLQV 187 (191)
T ss_dssp HHHHHHHHHHTTCCCCHHHHS
T ss_pred HHHHHHHHHHccCcCCHHHHh
Confidence 999999999999999988643
No 84
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.42 E-value=2.8e-12 Score=111.54 Aligned_cols=112 Identities=25% Similarity=0.443 Sum_probs=102.3
Q ss_pred ccccceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
....++.|+++.++..+|...|.+++....++++||||+++..++.+++.|.+.|+.+..+||+|++.+|..+++.|++|
T Consensus 5 ~~~~~i~~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g 84 (163)
T 2hjv_A 5 LTTRNIEHAVIQVREENKFSLLKDVLMTENPDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG 84 (163)
T ss_dssp -CCCCEEEEEEECCGGGHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT
T ss_pred cCcccceEEEEECChHHHHHHHHHHHHhcCCCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC
Confidence 35677999999999999999999999988888999999999999999999999999999999999999999999999999
Q ss_pred C----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCC
Q psy1548 404 H----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436 (448)
Q Consensus 404 ~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p 436 (448)
+ .|.+++|++.. +...++.+++.++.++.+++
T Consensus 85 ~~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~i~~~~~~~~~~~~ 162 (163)
T 2hjv_A 85 EYRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRAGNKGKAISFVTAF-EKRFLADIEEYIGFEIQKIE 162 (163)
T ss_dssp SCSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCTTCCEEEEEEECGG-GHHHHHHHHHHHTSCCEECC
T ss_pred CCeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcCCCCceEEEEecHH-HHHHHHHHHHHHCCCcCccC
Confidence 8 68899999876 78899999999998887654
No 85
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.42 E-value=2.8e-12 Score=111.77 Aligned_cols=113 Identities=32% Similarity=0.542 Sum_probs=102.6
Q ss_pred cceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC-
Q psy1548 327 HGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH- 404 (448)
Q Consensus 327 ~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~- 404 (448)
.+++|+|+.++..+ |...|.++++...++++||||+++..|+.++..|++.|+.+..+||+|++.+|.++++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~K~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g~~ 81 (165)
T 1fuk_A 2 EGIKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSS 81 (165)
T ss_dssp --CEEEEEEEESGGGHHHHHHHHHHHTTCSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTTSC
T ss_pred CCcEEEEEECCcchhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 46889999988877 9999999999988899999999999999999999999999999999999999999999999997
Q ss_pred ---------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCCccc
Q psy1548 405 ---------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439 (448)
Q Consensus 405 ---------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~ 439 (448)
.|.++++++.. +...+..+++.++..+.++|.++
T Consensus 82 ~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 160 (165)
T 1fuk_A 82 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 160 (165)
T ss_dssp SEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-----CEEEEEEETT-THHHHHHHHHHSSCCCEECCSCC
T ss_pred EEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccccCCCCceEEEEEcch-HHHHHHHHHHHHccCccccCccH
Confidence 68899999876 78899999999999999999775
Q ss_pred c
Q psy1548 440 D 440 (448)
Q Consensus 440 ~ 440 (448)
.
T Consensus 161 ~ 161 (165)
T 1fuk_A 161 A 161 (165)
T ss_dssp T
T ss_pred H
Confidence 3
No 86
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.39 E-value=5.9e-12 Score=110.85 Aligned_cols=114 Identities=26% Similarity=0.394 Sum_probs=104.2
Q ss_pred ccccceeEEEEEcCcch-HHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 324 LTLHGLQQHYVKLKENE-KNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~~~-k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
.++.++.|+|+.++..+ |...|..+++....+++||||+++..|+.++..|.+.|+.+..+||+|++.+|..+++.|++
T Consensus 3 ~~~~~i~q~~~~~~~~~~K~~~L~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~ 82 (175)
T 2rb4_A 3 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRD 82 (175)
T ss_dssp CCBCCEEEEEEECSSHHHHHHHHHHHHTTSCCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHT
T ss_pred CccCCceEEEEEcCChHhHHHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 35678999999998765 99999999998888899999999999999999999999999999999999999999999999
Q ss_pred CC----------------------------------------------------CceEEEEecChhhHHHHHHHHHHhcC
Q psy1548 403 FH----------------------------------------------------KGLAITFASDENDAKILNNVQDRFDV 430 (448)
Q Consensus 403 g~----------------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~ 430 (448)
|+ .|.+++|++.. +...++.+++.++.
T Consensus 83 g~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~~g~~~~~~~~~-~~~~~~~i~~~~~~ 161 (175)
T 2rb4_A 83 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGLAFNMIEVD-ELPSLMKIQDHFNS 161 (175)
T ss_dssp TSCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----CCEEEEEEECGG-GHHHHHHHHHHHTC
T ss_pred CCCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCCCceEEEEEccc-hHHHHHHHHHHhcC
Confidence 87 67889999876 68899999999999
Q ss_pred CCCCCCcc
Q psy1548 431 SISELPDE 438 (448)
Q Consensus 431 ~~~~~p~~ 438 (448)
.+.++|..
T Consensus 162 ~~~~~~~~ 169 (175)
T 2rb4_A 162 SIKQLNAE 169 (175)
T ss_dssp CCEEECSS
T ss_pred cccccCCc
Confidence 99888765
No 87
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.38 E-value=2e-13 Score=141.57 Aligned_cols=128 Identities=17% Similarity=0.119 Sum_probs=84.9
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.|++. |.++.++ ..+.+..|+++++.+|||+|||++|++|++.. +.+++|++||++|+.|+.+.+..+
T Consensus 7 ~~r~~---Q~~~~~~--v~~~~~~~~~~~~~a~TGtGKT~~~l~~~~~~------~~~~~~~~~t~~l~~q~~~~~~~l- 74 (540)
T 2vl7_A 7 QLRQW---QAEKLGE--AINALKHGKTLLLNAKPGLGKTVFVEVLGMQL------KKKVLIFTRTHSQLDSIYKNAKLL- 74 (540)
T ss_dssp --CCH---HHHHHHH--HHHHHHTTCEEEEECCTTSCHHHHHHHHHHHH------TCEEEEEESCHHHHHHHHHHHGGG-
T ss_pred CCCHH---HHHHHHH--HHHHHHcCCCEEEEcCCCCcHHHHHHHHHHhC------CCcEEEEcCCHHHHHHHHHHHHhc-
Confidence 56666 9993332 23445678999999999999999999999764 458999999999999999887774
Q ss_pred ccCCCceEEEEEcCccc--------HH------------------------hHHH---------------HhcCCCcEEE
Q psy1548 205 KYMSNIKVGVFFGGLPI--------QK------------------------DEEY---------------LKTHNPQIVV 237 (448)
Q Consensus 205 ~~~~~~~v~~~~g~~~~--------~~------------------------~~~~---------------l~~~~~~IlV 237 (448)
++++..+.|.... .. .+.. ... .++|+|
T Consensus 75 ----~~~~~~l~gr~~lC~~~~~~~~~~~~~c~~c~~~~~~~~~gd~~~~~~~~~~~~~~~~Cpy~~~r~~~~-~adiVV 149 (540)
T 2vl7_A 75 ----GLKTGFLIGKSASCIYAQGDEEPDEINCSKCRLKDKIKTIEDKEPSKLIEEFKDAVDYCPYYSLRANLK-DKDVIA 149 (540)
T ss_dssp ----TCCEEEC---------------------------------------------------------CTTGG-GCSEEE
T ss_pred ----CCcEEEecCCccccCCchhcccccccCCCCCCchhcccccccCCcHHHHHHHhhhcCCChHHHHHHHhh-cCCEEE
Confidence 3344433332100 00 0000 011 369999
Q ss_pred EcHHHHHHHHHCCCC-------cCCCeeEEEecchhHHH
Q psy1548 238 GTPGRILALVRNKKL-------NLSLLKHFILDECDKML 269 (448)
Q Consensus 238 ~Tp~~l~~~l~~~~~-------~~~~i~~lViDEah~l~ 269 (448)
+|+..+.+....+.+ .+....++||||||.+.
T Consensus 150 ~n~~~l~~~~~~~~~~~~~~~~~~~~~~~vIiDEAHnl~ 188 (540)
T 2vl7_A 150 MTYPYLFQKPIRNSVFCNKDDCLKLEDYLIVIDEAHNLL 188 (540)
T ss_dssp EETHHHHSHHHHHHHSCSSTTSCCGGGEEEEETTGGGGG
T ss_pred EChHHhcCHHHHHhhCcccccccCcCCCEEEEEccccHH
Confidence 999999874432221 23567899999999883
No 88
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.33 E-value=5.3e-12 Score=112.23 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=98.5
Q ss_pred ccccceeEEEEEcCcchHHHHHHHHHhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 324 LTLHGLQQHYVKLKENEKNKKLFELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 324 ~~~~~i~~~~~~~~~~~k~~~L~~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
....++.|.++.++..+|...|.++++.. .++++||||+++..|+.++..|+..|+.+..+||+|++.+|..+++.|++
T Consensus 15 ~~~~~i~q~~~~v~~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~ 94 (185)
T 2jgn_A 15 STSENITQKVVWVEESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRS 94 (185)
T ss_dssp -CCTTEEEEEEECCGGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHH
T ss_pred CCCCCceEEEEEeCcHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 45678999999999999999999999887 56799999999999999999999999999999999999999999999999
Q ss_pred CC----------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCC
Q psy1548 403 FH----------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELP 436 (448)
Q Consensus 403 g~----------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p 436 (448)
|+ .|.+++|++.. +...++.+++.++...+++|
T Consensus 95 g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g~~g~~~~~~~~~-~~~~~~~l~~~l~~~~~~~~ 173 (185)
T 2jgn_A 95 GKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVGNLGLATSFFNER-NINITKDLLDLLVEAKQEVP 173 (185)
T ss_dssp TSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTTSCEEEEEEECGG-GGGGHHHHHHHHHHTTCCCC
T ss_pred CCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCCCCcEEEEEEchh-hHHHHHHHHHHHHhccCCCC
Confidence 98 68899999876 78888999999999999999
Q ss_pred ccccc
Q psy1548 437 DEIDL 441 (448)
Q Consensus 437 ~~~~~ 441 (448)
.++..
T Consensus 174 ~~l~~ 178 (185)
T 2jgn_A 174 SWLEN 178 (185)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=98.80 E-value=2.2e-12 Score=113.06 Aligned_cols=118 Identities=21% Similarity=0.280 Sum_probs=100.6
Q ss_pred cceeEEEEEcCc-chHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCC
Q psy1548 327 HGLQQHYVKLKE-NEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHK 405 (448)
Q Consensus 327 ~~i~~~~~~~~~-~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~ 405 (448)
.++.|+++.++. ..|...|..+++...++++||||+++..|+.++..|++.|+.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~~i~~~~~~~~~~~~k~~~l~~ll~~~~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g~- 80 (170)
T 2yjt_D 2 KKIHQWYYRADDLEHKTALLVHLLKQPEATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEGR- 80 (170)
Confidence 357788888888 889999999998877789999999999999999999999999999999999999999999999987
Q ss_pred ceEEEEecChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 406 g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
..|+++|+....++ ++...-.+-..++|.+...+.++.||
T Consensus 81 -~~vLvaT~~~~~Gi--d~~~~~~Vi~~~~p~~~~~~~qr~GR 120 (170)
T 2yjt_D 81 -VNVLVATDVAARGI--DIPDVSHVFNFDMPRSGDTYLHRIGR 120 (170)
Confidence 45777776544444 55555556677889888889999987
No 90
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.17 E-value=2e-10 Score=104.32 Aligned_cols=110 Identities=14% Similarity=0.207 Sum_probs=99.2
Q ss_pred ceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC---
Q psy1548 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--- 404 (448)
Q Consensus 328 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~--- 404 (448)
.+.+.++.++...|...|..++....++++||||+++..++.++..|.+.|+.+..+||+|++.+|.++++.|++|+
T Consensus 5 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g~~~v 84 (212)
T 3eaq_A 5 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQGEVRV 84 (212)
T ss_dssp CBCCEEEECCTTSHHHHHHHHHHHHCCSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSSSCCE
T ss_pred ceeeeEEeCCHHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCCCCeE
Confidence 35567778888999999999999888899999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCCcc
Q psy1548 405 -------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438 (448)
Q Consensus 405 -------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~ 438 (448)
.|.+++|++.. +...++.+++.++..+..++..
T Consensus 85 lvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g~~g~~~~l~~~~-~~~~~~~i~~~~~~~~~~~~~~ 160 (212)
T 3eaq_A 85 LVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFKRVNPP 160 (212)
T ss_dssp EEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC--BEEEEEECGG-GHHHHHHHHHHHSSCCEECCCC
T ss_pred EEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCCCCCeEEEEEchh-HHHHHHHHHHHhcCcCeecCCC
Confidence 78999999876 7889999999999888877543
No 91
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.16 E-value=2.2e-10 Score=109.40 Aligned_cols=110 Identities=15% Similarity=0.211 Sum_probs=100.8
Q ss_pred ceeEEEEEcCcchHHHHHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC---
Q psy1548 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH--- 404 (448)
Q Consensus 328 ~i~~~~~~~~~~~k~~~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~--- 404 (448)
.+.++++.++..+|...|..+++...++++||||++++.++.++..|.+.|+.+..+||+|++.+|..+++.|++|+
T Consensus 2 ~v~~~~i~~~~~~K~~~L~~ll~~~~~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g~~~v 81 (300)
T 3i32_A 2 TYEEEAVPAPVRGRLEVLSDLLYVASPDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQGEVRV 81 (300)
T ss_dssp CSEEEEEECCSSSHHHHHHHHHHHHCCSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHTSCCE
T ss_pred ceEEEEEECCHHHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcCCceE
Confidence 46789999999999999999999888899999999999999999999999999999999999999999999999998
Q ss_pred -------------------------------------------CceEEEEecChhhHHHHHHHHHHhcCCCCCCCcc
Q psy1548 405 -------------------------------------------KGLAITFASDENDAKILNNVQDRFDVSISELPDE 438 (448)
Q Consensus 405 -------------------------------------------~g~~I~~~t~~~d~~~l~~i~~~~~~~~~~~p~~ 438 (448)
.|.+++|++.. +...++.+++.++..+..++..
T Consensus 82 LVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~g~~G~~i~l~~~~-e~~~~~~ie~~~~~~~~~~~~~ 157 (300)
T 3i32_A 82 LVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRAGRGGRVVLLYGPR-ERRDVEALERAVGRRFKRVNPP 157 (300)
T ss_dssp EEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC-----CEEEEEECSS-THHHHHHHHHHHTCCCEECCCC
T ss_pred EEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcCCCCceEEEEeChH-HHHHHHHHHHHhCCcceEeCCC
Confidence 78999999887 7889999999999888776543
No 92
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=98.79 E-value=2.7e-09 Score=112.05 Aligned_cols=84 Identities=20% Similarity=0.219 Sum_probs=67.7
Q ss_pred hhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCC
Q psy1548 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSN 209 (448)
Q Consensus 130 ~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 209 (448)
+++|.++..+ ....+..|+++++.||||+|||++|++|++..+... +.+++|++||++|+.|+.+.+..+.... +
T Consensus 5 R~~Q~~~~~~--v~~~l~~~~~~~~~apTGtGKT~a~l~p~l~~~~~~--~~kvli~t~T~~l~~Qi~~el~~l~~~~-~ 79 (620)
T 4a15_A 5 RQYQVEAIDF--LRSSLQKSYGVALESPTGSGKTIMALKSALQYSSER--KLKVLYLVRTNSQEEQVIKELRSLSSTM-K 79 (620)
T ss_dssp CHHHHHHHHH--HHHHHHHSSEEEEECCTTSCHHHHHHHHHHHHHHHH--TCEEEEEESSHHHHHHHHHHHHHHHHHS-C
T ss_pred CHHHHHHHHH--HHHHHHcCCCEEEECCCCCCHHHHHHHHHHHhhhhc--CCeEEEECCCHHHHHHHHHHHHHHhhcc-C
Confidence 3448884442 335566899999999999999999999999887543 3589999999999999999999998765 6
Q ss_pred ceEEEEEcC
Q psy1548 210 IKVGVFFGG 218 (448)
Q Consensus 210 ~~v~~~~g~ 218 (448)
+++..+.|+
T Consensus 80 ~~~~~l~gr 88 (620)
T 4a15_A 80 IRAIPMQGR 88 (620)
T ss_dssp CCEEECCCH
T ss_pred eEEEEEECC
Confidence 777766653
No 93
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.74 E-value=9.3e-09 Score=107.86 Aligned_cols=143 Identities=17% Similarity=0.235 Sum_probs=89.8
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhH--HHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKT--AVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT--~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 210 (448)
|+. +++.++.++.++++|++|+||| ++++++.+..+... .+.++++++||..++.++.+.+..+...+ ++
T Consensus 154 Q~~------Ai~~~l~~~~~vi~G~pGTGKTt~l~~ll~~l~~~~~~-~~~~vll~APTg~AA~~L~e~~~~~~~~l-~l 225 (608)
T 1w36_D 154 QKV------AAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADG-ERCRIRLAAPTGKAAARLTESLGKALRQL-PL 225 (608)
T ss_dssp HHH------HHHHHHTBSEEEEECCTTSTHHHHHHHHHHHHHHTCSS-CCCCEEEEBSSHHHHHHHHHHHTHHHHHS-SC
T ss_pred HHH------HHHHHhcCCCEEEEeCCCCCHHHHHHHHHHHHHHhhhc-CCCeEEEEeCChhHHHHHHHHHHHHHhcC-CC
Confidence 999 9999999999999999999999 66777777755322 34689999999999999988877665544 22
Q ss_pred eEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCe
Q psy1548 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQ 290 (448)
Q Consensus 211 ~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q 290 (448)
..... ...+ .....+ ..++-.+|+.. . +.........++++|||||+ |++ ...+..++..++...|
T Consensus 226 ~~~~~-~~~~--~~~~Ti----h~ll~~~~~~~-~-~~~~~~~~l~~d~lIIDEAs-ml~----~~~~~~Ll~~l~~~~~ 291 (608)
T 1w36_D 226 TDEQK-KRIP--EDASTL----HRLLGAQPGSQ-R-LRHHAGNPLHLDVLVVDEAS-MID----LPMMSRLIDALPDHAR 291 (608)
T ss_dssp CSCCC-CSCS--CCCBTT----TSCC-------------CTTSCCSCSEEEECSGG-GCB----HHHHHHHHHTCCTTCE
T ss_pred CHHHH-hccc--hhhhhh----HhhhccCCCch-H-HHhccCCCCCCCEEEEechh-hCC----HHHHHHHHHhCCCCCE
Confidence 11000 0000 000000 11222233321 1 11112223378899999999 544 2456778888999999
Q ss_pred EEEEecc
Q psy1548 291 VMMFSAT 297 (448)
Q Consensus 291 ~i~~SAT 297 (448)
++++.-.
T Consensus 292 liLvGD~ 298 (608)
T 1w36_D 292 VIFLGDR 298 (608)
T ss_dssp EEEEECT
T ss_pred EEEEcch
Confidence 9998754
No 94
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=98.43 E-value=1.2e-07 Score=89.14 Aligned_cols=111 Identities=14% Similarity=0.131 Sum_probs=79.1
Q ss_pred cCcchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEe
Q psy1548 336 LKENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQ-NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFA 412 (448)
Q Consensus 336 ~~~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~-g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~ 412 (448)
.....|...|.+++... .+.++||||++...++.+...|.+. |+++..+||++++.+|.++++.|+++...-.++++
T Consensus 92 ~~~s~K~~~L~~ll~~~~~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~s 171 (271)
T 1z5z_A 92 VRRSGKMIRTMEIIEEALDEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLS 171 (271)
T ss_dssp STTCHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEE
T ss_pred cccCHHHHHHHHHHHHHHhCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEe
Confidence 34567999999988776 6789999999999999999999885 99999999999999999999999998543345555
Q ss_pred cChhhHHHHHHHHHHhcCCCCCCCccccccccccCC
Q psy1548 413 SDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448 (448)
Q Consensus 413 t~~~d~~~l~~i~~~~~~~~~~~p~~~~~~~~~~~~ 448 (448)
|.....++ ++...-.+-+.++|-+...+.+..||
T Consensus 172 t~~~g~Gl--nl~~a~~VI~~d~~wnp~~~~Q~~gR 205 (271)
T 1z5z_A 172 VKAGGFGI--NLTSANRVIHFDRWWNPAVEDQATDR 205 (271)
T ss_dssp CCTTCCCC--CCTTCSEEEECSCCSCTTTC------
T ss_pred hhhhcCCc--CcccCCEEEEECCCCChhHHHHHHHh
Confidence 54332222 22222334455666667677777776
No 95
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=98.37 E-value=1.2e-07 Score=97.76 Aligned_cols=134 Identities=20% Similarity=0.245 Sum_probs=88.8
Q ss_pred ccccCCCcee--eeecCceeEEeecCCCccccccccCC-CccccccccccccccchhhhhhhhccCceeeeccCCcccCC
Q psy1548 10 KLSCGSGNVF--LFFRAFIRFSSSFPHSKMADNDDLLD-YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFL 86 (448)
Q Consensus 10 ~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (448)
.+.+..+.++ +|.|+|+.|.+....++.....+++. ........+.......+.........+..+..++.+.....
T Consensus 195 ~l~~~~~~~~~~~~~r~~l~~~v~~~~~~~~~l~~~l~~~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~ 274 (523)
T 1oyw_A 195 LLGLNDPLIQISSFDRPNIRYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNV 274 (523)
T ss_dssp HHTCCSCEEEECCCCCTTEEEEEEECSSHHHHHHHHHHHTTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHH
T ss_pred HhCCCCCeEEeCCCCCCceEEEEEeCCCHHHHHHHHHHhcCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHH
Confidence 4556666666 89999999998876554322222221 12234556665555555555455445555555555443222
Q ss_pred CCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 87 LKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
...-+........+|+|||+++++|||+++++.|+++..|..+..|.|++|||||..
T Consensus 275 R~~~~~~f~~g~~~vlVaT~a~~~GiD~p~v~~VI~~~~p~s~~~y~Qr~GRaGR~g 331 (523)
T 1oyw_A 275 RADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331 (523)
T ss_dssp HHHHHHHHHTTSCSEEEECTTSCTTTCCTTCCEEEESSCCSSHHHHHHHHTTSCTTS
T ss_pred HHHHHHHHHcCCCeEEEEechhhCCCCccCccEEEEECCCCCHHHHHHHhccccCCC
Confidence 212222223344589999999999999999999999999999999999999999943
No 96
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=98.33 E-value=2.6e-07 Score=96.43 Aligned_cols=133 Identities=18% Similarity=0.215 Sum_probs=88.1
Q ss_pred ccccCCCcee--eeecCceeEEeecCCCcccc-ccccCC-----CccccccccccccccchhhhhhhhccCceeeeccCC
Q psy1548 10 KLSCGSGNVF--LFFRAFIRFSSSFPHSKMAD-NDDLLD-----YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSG 81 (448)
Q Consensus 10 ~~~~~~~~~~--~~~r~~~~~~~~~~~~~~~~-~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (448)
.|.++...++ +|.|+|+.|.+........+ .+.+.+ ...+....+.......+.........+..+...+.+
T Consensus 221 ~l~~~~~~~~~~~~~r~nl~~~v~~~~~~~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~ 300 (591)
T 2v1x_A 221 ILCIEKCFTFTASFNRPNLYYEVRQKPSNTEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHAN 300 (591)
T ss_dssp HTTCCSCEEEECCCCCTTEEEEEEECCSSHHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTT
T ss_pred HhCCCCcEEEecCCCCcccEEEEEeCCCcHHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCC
Confidence 4555555555 89999999988765432111 122221 133455666665555555555555455555555554
Q ss_pred cccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 82 FRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
........-+..+.....+|+|||++++||||+++++.|++|..|..++.|.|++|||||.
T Consensus 301 l~~~~R~~~~~~F~~g~~~VlVAT~a~~~GID~p~V~~VI~~~~p~s~~~y~Qr~GRaGR~ 361 (591)
T 2v1x_A 301 LEPEDKTTVHRKWSANEIQVVVATVAFGMGIDKPDVRFVIHHSMSKSMENYYQESGRAGRD 361 (591)
T ss_dssp SCHHHHHHHHHHHHTTSSSEEEECTTSCTTCCCSCEEEEEESSCCSSHHHHHHHHTTSCTT
T ss_pred CCHHHHHHHHHHHHcCCCeEEEEechhhcCCCcccccEEEEeCCCCCHHHHHHHhccCCcC
Confidence 4432222222333344558999999999999999999999999999999999999999994
No 97
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.79 E-value=0.0005 Score=72.40 Aligned_cols=65 Identities=17% Similarity=0.149 Sum_probs=49.7
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhcc-CCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~-~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|.+ ++.. .+..++|.|+.|||||.+..--+...+... ....++|++++|+..+.++.+.+..+.+
T Consensus 14 Q~~------av~~--~~~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~ 79 (647)
T 3lfu_A 14 QRE------AVAA--PRSNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMG 79 (647)
T ss_dssp HHH------HHTC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHC
T ss_pred HHH------HHhC--CCCCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhc
Confidence 888 6652 367899999999999987655555555432 2335899999999999999999888754
No 98
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=97.71 E-value=0.00013 Score=76.58 Aligned_cols=68 Identities=19% Similarity=0.093 Sum_probs=50.2
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+.+.|.+ ++..++.+.-.+|+||+|+|||.+.. .++..+... .+.++++++||..-+.++.+.+...
T Consensus 180 ~ln~~Q~~------av~~~l~~~~~li~GppGTGKT~~~~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 180 DLNHSQVY------AVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCHHHHH------HHHHHHTCSEEEEECCTTSCHHHHHH-HHHHHHHTS-SSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCHHHHH------HHHHHhcCCCeEEECCCCCCHHHHHH-HHHHHHHHc-CCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 35666999 77776667778999999999997743 333333322 3458999999999999988777654
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=97.66 E-value=0.00015 Score=78.20 Aligned_cols=68 Identities=13% Similarity=0.093 Sum_probs=50.2
Q ss_pred CchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+.+.|.+ ++..++.+.-.+|+||.|+|||.+..- ++..+... .+.++++++||..-+.++.+.+...
T Consensus 360 ~Ln~~Q~~------Av~~~l~~~~~lI~GppGTGKT~~i~~-~i~~l~~~-~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 360 QLNSSQSN------AVSHVLQRPLSLIQGPPGTGKTVTSAT-IVYHLSKI-HKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCHHHHH------HHHHHTTCSEEEEECSTTSSHHHHHHH-HHHHHHHH-HCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred cCCHHHHH------HHHHHhcCCCEEEECCCCCCHHHHHHH-HHHHHHhC-CCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 34566999 777776667789999999999976443 33333221 2348999999999999988888764
No 100
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=97.55 E-value=0.00031 Score=75.59 Aligned_cols=67 Identities=18% Similarity=0.071 Sum_probs=49.9
Q ss_pred chhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 129 SDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 129 ~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
+.+.|.+ ++..++.+.-.+|+||.|+|||.+.. .++..+... .+.++++++||..-+.++.+.+...
T Consensus 357 Ln~~Q~~------Av~~~l~~~~~lI~GppGTGKT~ti~-~~i~~l~~~-~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 357 LNHSQVY------AVKTVLQRPLSLIQGPPGTGKTVTSA-TIVYHLARQ-GNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp CCHHHHH------HHHHHHTSSEEEEECCTTSCHHHHHH-HHHHHHHTT-CSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCHHHHH------HHHHhccCCeEEEEcCCCCCHHHHHH-HHHHHHHHc-CCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 4666999 77777777778999999999997643 344443332 3458999999999999988777653
No 101
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.53 E-value=0.00017 Score=74.79 Aligned_cols=129 Identities=15% Similarity=0.104 Sum_probs=77.5
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
+..+.+.|++ ++..++.++.+++.||.|+|||.+. ..++..+.. .+.++++++||...+..+.+...
T Consensus 187 ~~~L~~~Q~~------Av~~~~~~~~~~I~G~pGTGKTt~i-~~l~~~l~~--~g~~Vl~~ApT~~Aa~~L~e~~~---- 253 (574)
T 3e1s_A 187 RKGLSEEQAS------VLDQLAGHRLVVLTGGPGTGKSTTT-KAVADLAES--LGLEVGLCAPTGKAARRLGEVTG---- 253 (574)
T ss_dssp TTTCCHHHHH------HHHHHTTCSEEEEECCTTSCHHHHH-HHHHHHHHH--TTCCEEEEESSHHHHHHHHHHHT----
T ss_pred cCCCCHHHHH------HHHHHHhCCEEEEEcCCCCCHHHHH-HHHHHHHHh--cCCeEEEecCcHHHHHHhHhhhc----
Confidence 3344566999 8877778889999999999999653 334443333 24579999999988876554321
Q ss_pred cCCCceEEEEEcCcccHHhHHHHhcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhC
Q psy1548 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285 (448)
Q Consensus 206 ~~~~~~v~~~~g~~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l 285 (448)
.....+ ..+.. . .|. ............+++||||++.+.. ..+..+++.+
T Consensus 254 ----~~a~Ti----------h~ll~----~---~~~----~~~~~~~~~~~~dvlIIDEasml~~-----~~~~~Ll~~~ 303 (574)
T 3e1s_A 254 ----RTASTV----------HRLLG----Y---GPQ----GFRHNHLEPAPYDLLIVDEVSMMGD-----ALMLSLLAAV 303 (574)
T ss_dssp ----SCEEEH----------HHHTT----E---ETT----EESCSSSSCCSCSEEEECCGGGCCH-----HHHHHHHTTS
T ss_pred ----ccHHHH----------HHHHc----C---Ccc----hhhhhhcccccCCEEEEcCccCCCH-----HHHHHHHHhC
Confidence 111000 00000 0 000 0011122234678999999995532 3456677778
Q ss_pred CCCCeEEEEecc
Q psy1548 286 PHTKQVMMFSAT 297 (448)
Q Consensus 286 ~~~~q~i~~SAT 297 (448)
+...+++++.-.
T Consensus 304 ~~~~~lilvGD~ 315 (574)
T 3e1s_A 304 PPGARVLLVGDT 315 (574)
T ss_dssp CTTCEEEEEECT
T ss_pred cCCCEEEEEecc
Confidence 878888877544
No 102
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=97.44 E-value=0.0001 Score=77.75 Aligned_cols=67 Identities=18% Similarity=0.113 Sum_probs=50.4
Q ss_pred CchhhhhhhccccccceeeeeCcc-eeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 128 DSDTYLHRVARAGRFGTKAVLGMD-ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 128 ~~~~yQ~~~~~~~~~~~~~~~g~~-vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+.+.|.+ |+..++..++ .||+||.|+|||.+..-.+.+.+.. +.++|+++||..-+.++.+.+...
T Consensus 189 ~LN~~Q~~------AV~~al~~~~~~lI~GPPGTGKT~ti~~~I~~l~~~---~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 189 CLDTSQKE------AVLFALSQKELAIIHGPPGTGKTTTVVEIILQAVKQ---GLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TCCHHHHH------HHHHHHHCSSEEEEECCTTSCHHHHHHHHHHHHHHT---TCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCHHHHH------HHHHHhcCCCceEEECCCCCCHHHHHHHHHHHHHhC---CCeEEEEcCchHHHHHHHHHHHhc
Confidence 45677999 8877776554 6899999999998755444444432 458999999999998887777653
No 103
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=97.38 E-value=0.00012 Score=65.88 Aligned_cols=45 Identities=44% Similarity=0.878 Sum_probs=42.3
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+++++|+|.++++.|++|..|.....|.|.+|||||..
T Consensus 82 ~~vlvaT~~~~~Gidi~~v~~Vi~~~~p~~~~~~~qr~GR~gR~g 126 (212)
T 3eaq_A 82 VRVLVATDVAARGLDIPQVDLVVHYRLPDRAEAYQHRSGRTGRAG 126 (212)
T ss_dssp CCEEEECTTTTCSSSCCCBSEEEESSCCSSHHHHHHHHTTBCCCC
T ss_pred CeEEEecChhhcCCCCccCcEEEECCCCcCHHHHHHHhcccCCCC
Confidence 479999999999999999999999999999999999999999943
No 104
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.38 E-value=0.00026 Score=71.45 Aligned_cols=131 Identities=12% Similarity=0.104 Sum_probs=73.8
Q ss_pred ccCCCCchhhhhhhccccccceeeee----Cc-ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 123 YDMPEDSDTYLHRVARAGRFGTKAVL----GM-DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 123 ~~~p~~~~~yQ~~~~~~~~~~~~~~~----g~-~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
|..+++- |++ ++..++. ++ .+++.|+.|+|||.+. ..++..+..... ..+++++||...+..+.
T Consensus 23 ~~~Ln~~---Q~~------av~~~~~~i~~~~~~~li~G~aGTGKT~ll-~~~~~~l~~~~~-~~il~~a~T~~Aa~~l~ 91 (459)
T 3upu_A 23 FDDLTEG---QKN------AFNIVMKAIKEKKHHVTINGPAGTGATTLT-KFIIEALISTGE-TGIILAAPTHAAKKILS 91 (459)
T ss_dssp SSCCCHH---HHH------HHHHHHHHHHSSSCEEEEECCTTSCHHHHH-HHHHHHHHHTTC-CCEEEEESSHHHHHHHH
T ss_pred cccCCHH---HHH------HHHHHHHHHhcCCCEEEEEeCCCCCHHHHH-HHHHHHHHhcCC-ceEEEecCcHHHHHHHH
Confidence 5556666 999 6655433 23 8999999999999653 344444433322 36899999998776655
Q ss_pred HHHHHhhccCCCceEEEEEcCcccHHhHHHHhc-----CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhh
Q psy1548 198 KEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT-----HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQL 272 (448)
Q Consensus 198 ~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~-----~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~ 272 (448)
+.+. ..+..+. ..+.. .....+.. .....+...+++|+||++.+..
T Consensus 92 ~~~~--------~~~~T~h---------~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~iiiDE~~~~~~-- 142 (459)
T 3upu_A 92 KLSG--------KEASTIH---------SILKINPVTYEENVLFEQ----------KEVPDLAKCRVLICDEVSMYDR-- 142 (459)
T ss_dssp HHHS--------SCEEEHH---------HHHTEEEEECSSCEEEEE----------CSCCCCSSCSEEEESCGGGCCH--
T ss_pred hhhc--------cchhhHH---------HHhccCcccccccchhcc----------cccccccCCCEEEEECchhCCH--
Confidence 4331 1111110 00000 00011110 1223356788999999995532
Q ss_pred hhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 273 EMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 273 ~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..+..++..++...+++++.-
T Consensus 143 ---~~~~~l~~~~~~~~~~~~vGD 163 (459)
T 3upu_A 143 ---KLFKILLSTIPPWCTIIGIGD 163 (459)
T ss_dssp ---HHHHHHHHHSCTTCEEEEEEC
T ss_pred ---HHHHHHHHhccCCCEEEEECC
Confidence 244556666666677776653
No 105
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=97.33 E-value=0.00018 Score=63.61 Aligned_cols=45 Identities=40% Similarity=0.743 Sum_probs=41.8
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|+|+++++|+|.++++.|++|+.|.....|.|.+||+||.
T Consensus 104 ~~~vLvaT~~~~~Gldi~~v~~VI~~d~p~~~~~~~qr~GR~gR~ 148 (191)
T 2p6n_A 104 KKDVLVATDVASKGLDFPAIQHVINYDMPEEIENYVHRIGRTGCS 148 (191)
T ss_dssp SCSEEEECHHHHTTCCCCCCSEEEESSCCSSHHHHHHHHTTSCC-
T ss_pred CCEEEEEcCchhcCCCcccCCEEEEeCCCCCHHHHHHHhCccccC
Confidence 348999999999999999999999999999999999999999983
No 106
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=97.24 E-value=0.00029 Score=66.87 Aligned_cols=45 Identities=44% Similarity=0.818 Sum_probs=41.1
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|||+++++|+|.++++.|++|..|.....|.|.+|||||.
T Consensus 78 ~~~vLVaT~va~~Gidi~~v~~VI~~d~p~s~~~y~Qr~GRagR~ 122 (300)
T 3i32_A 78 EVRVLVATDVAARGLDIPQVDLVVHYRMPDRAEAYQHRSGRTGRA 122 (300)
T ss_dssp SCCEEEECSTTTCSTTCCCCSEEEESSCCSSTTHHHHHHTCCC--
T ss_pred CceEEEEechhhcCccccceeEEEEcCCCCCHHHHHHHccCcCcC
Confidence 357999999999999999999999999999999999999999994
No 107
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=97.14 E-value=0.0003 Score=60.28 Aligned_cols=44 Identities=48% Similarity=0.955 Sum_probs=41.7
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..|+|+|+++++|+|.++++.|++|+.|.....|.|.+||+||.
T Consensus 86 ~~vlv~T~~~~~Gld~~~~~~Vi~~~~p~~~~~~~qr~GR~~R~ 129 (163)
T 2hjv_A 86 YRYLVATDVAARGIDIENISLVINYDLPLEKESYVHRTGRTGRA 129 (163)
T ss_dssp CSEEEECGGGTTTCCCSCCSEEEESSCCSSHHHHHHHTTTSSCT
T ss_pred CeEEEECChhhcCCchhcCCEEEEeCCCCCHHHHHHhccccCcC
Confidence 47999999999999999999999999999999999999999883
No 108
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=97.14 E-value=0.0003 Score=60.91 Aligned_cols=44 Identities=93% Similarity=1.376 Sum_probs=41.7
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
...|+|||+++++|+|.++++.|++|+.|.....|.|.+||+||
T Consensus 81 ~~~vLvaT~~~~~Gldi~~~~~Vi~~d~p~~~~~~~qr~GR~~R 124 (172)
T 1t5i_A 81 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 124 (172)
T ss_dssp SCSEEEESSCCSTTCCGGGCSEEEESSCCSSHHHHHHHHHHHTG
T ss_pred CCcEEEECCchhcCcchhhCCEEEEECCCCCHHHHHHHhccccc
Confidence 34899999999999999999999999999999999999999988
No 109
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=97.14 E-value=0.00055 Score=60.04 Aligned_cols=72 Identities=33% Similarity=0.507 Sum_probs=44.0
Q ss_pred cCceeeeccCCcccCCCCHHHHHHH-hhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 71 KGAYVSIHSSGFRDFLLKPEILRAI-VDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+..+...+.+...-.... .++.+ .....|+|+|+++++|+|.+++..|++|+.|.....|.|.+||+||..
T Consensus 69 ~g~~~~~lhg~~~~~~r~~-~~~~f~~g~~~vLvaT~~~~~Gldi~~~~~VI~~d~p~s~~~~~Qr~GR~~R~g 141 (185)
T 2jgn_A 69 EGYACTSIHGDRSQRDREE-ALHQFRSGKSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRVG 141 (185)
T ss_dssp TTCCEEEEC--------CH-HHHHHHHTSSSEEEEEC------CCCSBSEEEESSCCSSHHHHHHHHTTBCCTT
T ss_pred cCCceEEEeCCCCHHHHHH-HHHHHHcCCCeEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHccccCCCC
Confidence 3433444444444333333 33343 344589999999999999999999999999999999999999999843
No 110
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=97.14 E-value=0.00056 Score=68.48 Aligned_cols=57 Identities=39% Similarity=0.715 Sum_probs=47.4
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccC
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKS 158 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apT 158 (448)
..|+|||+++++|+|.++++.|++|+.|.....|-|.+||+||+.. .|..+++..|.
T Consensus 351 ~~vLvaT~v~~rGlDi~~v~~VI~~d~p~~~~~y~qriGR~gR~g~---~G~a~~~~~~~ 407 (434)
T 2db3_A 351 MKVLIATSVASRGLDIKNIKHVINYDMPSKIDDYVHRIGRTGRVGN---NGRATSFFDPE 407 (434)
T ss_dssp CSEEEECGGGTSSCCCTTCCEEEESSCCSSHHHHHHHHTTSSCTTC---CEEEEEEECTT
T ss_pred CcEEEEchhhhCCCCcccCCEEEEECCCCCHHHHHHHhcccccCCC---CCEEEEEEecc
Confidence 4899999999999999999999999999999999999999999532 34444444443
No 111
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=97.07 E-value=0.00057 Score=58.60 Aligned_cols=43 Identities=47% Similarity=1.043 Sum_probs=40.3
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
.+|+|+|+++++|+|.+++..|++|..|.....|.|.+||+||
T Consensus 81 ~~vlv~T~~~~~G~d~~~~~~Vi~~~~p~~~~~~~qr~GR~gR 123 (165)
T 1fuk_A 81 SRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 123 (165)
T ss_dssp CSEEEEEGGGTTTCCCCSCSEEEESSCCSSGGGGGGSSCSCC-
T ss_pred CEEEEEcChhhcCCCcccCCEEEEeCCCCCHHHHHHHhccccc
Confidence 4899999999999999999999999999999999999999988
No 112
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=97.05 E-value=0.00043 Score=60.02 Aligned_cols=44 Identities=48% Similarity=0.940 Sum_probs=39.4
Q ss_pred ccceeEeeccccCCcccccceeEeeccCC------CCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p------~~~~~yQ~~~~~~~~ 141 (448)
..+|+|+|+++++|+|.++++.|++|..| .....|.|.+||+||
T Consensus 84 ~~~vLvaT~~~~~Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR 133 (175)
T 2rb4_A 84 KEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGR 133 (175)
T ss_dssp SCSEEEECCSCCTTTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC--
T ss_pred CCeEEEEecchhcCCCcccCCEEEEeCCCCCccccCCHHHHHHHhccccc
Confidence 34899999999999999999999999999 888999999999988
No 113
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=96.11 E-value=9.2e-05 Score=64.05 Aligned_cols=44 Identities=52% Similarity=0.893 Sum_probs=41.2
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..+|+|+|+++++|+|.++++.|++|+.|.....|.|.+||+||
T Consensus 80 ~~~vLvaT~~~~~Gid~~~~~~Vi~~~~p~~~~~~~qr~GR~~R 123 (170)
T 2yjt_D 80 RVNVLVATDVAARGIDIPDVSHVFNFDMPRSGDTYLHRIGRTAR 123 (170)
Confidence 34799999999999999999999999999999999999999988
No 114
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=96.82 E-value=0.0066 Score=59.38 Aligned_cols=76 Identities=11% Similarity=0.123 Sum_probs=55.4
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|..+.+||.. .+..+...+-+++..+-+.|||.+....++..+... .+..+++++|++..|..+.+.++.+..
T Consensus 161 p~~L~p~Qk~------il~~l~~~R~~vi~~sRq~GKT~l~a~~~l~~a~~~-~g~~v~~vA~t~~qA~~vf~~i~~mi~ 233 (385)
T 2o0j_A 161 KVQLRDYQRD------MLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFN-KDKAVGILAHKGSMSAEVLDRTKQAIE 233 (385)
T ss_dssp ECCCCHHHHH------HHHHHHHSSEEEEEECSSSCHHHHHHHHHHHHHHSS-SSCEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHH------HHHhhccCcEEEEEEcCcCChhHHHHHHHHHHHHhC-CCCeEEEEeCCHHHHHHHHHHHHHHHH
Confidence 4456777998 443332345689999999999988766666544333 345899999999999988888887776
Q ss_pred cCC
Q psy1548 206 YMS 208 (448)
Q Consensus 206 ~~~ 208 (448)
..|
T Consensus 234 ~~P 236 (385)
T 2o0j_A 234 LLP 236 (385)
T ss_dssp HSC
T ss_pred hCh
Confidence 554
No 115
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=96.70 E-value=0.0048 Score=61.23 Aligned_cols=108 Identities=19% Similarity=0.157 Sum_probs=62.5
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLK 229 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~ 229 (448)
+=.++.|+.|+|||... .+.+.. ...+|++||++++..+.+.+.+.....
T Consensus 162 ~v~~I~G~aGsGKTt~I----~~~~~~----~~~lVlTpT~~aa~~l~~kl~~~~~~~---------------------- 211 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEI----LSRVNF----EEDLILVPGRQAAEMIRRRANASGIIV---------------------- 211 (446)
T ss_dssp EEEEEEECTTSCHHHHH----HHHCCT----TTCEEEESCHHHHHHHHHHHTTTSCCC----------------------
T ss_pred cEEEEEcCCCCCHHHHH----HHHhcc----CCeEEEeCCHHHHHHHHHHhhhcCccc----------------------
Confidence 44678999999999753 222221 257999999999988877664321000
Q ss_pred cCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 230 THNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 230 ~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
....-|.|-++++ ++.........+.+|||||-.+ .. +. +..++...+. .+++++.-+
T Consensus 212 --~~~~~V~T~dsfL--~~~~~~~~~~~d~liiDE~sm~-~~-~~---l~~l~~~~~~-~~vilvGD~ 269 (446)
T 3vkw_A 212 --ATKDNVRTVDSFL--MNYGKGARCQFKRLFIDEGLML-HT-GC---VNFLVEMSLC-DIAYVYGDT 269 (446)
T ss_dssp --CCTTTEEEHHHHH--HTTTSSCCCCCSEEEEETGGGS-CH-HH---HHHHHHHTTC-SEEEEEECT
T ss_pred --cccceEEEeHHhh--cCCCCCCCCcCCEEEEeCcccC-CH-HH---HHHHHHhCCC-CEEEEecCc
Confidence 0123356766543 2222222234789999999844 43 33 2333444433 566666554
No 116
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=96.64 E-value=0.00095 Score=69.01 Aligned_cols=45 Identities=36% Similarity=0.576 Sum_probs=42.5
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
...|+|||+++++|+|+++++.|++|..|.....|.|.+|||||.
T Consensus 392 ~~~vLvaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~ 436 (563)
T 3i5x_A 392 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARS 436 (563)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCT
T ss_pred CCCEEEEcchhhcCCCcccCCEEEEECCCCchhhhhhhcCccccC
Confidence 348999999999999999999999999999999999999999994
No 117
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=96.61 E-value=0.0014 Score=68.17 Aligned_cols=46 Identities=37% Similarity=0.611 Sum_probs=42.9
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
...|+|||+++++|+|+++++.|+++..|.....|.|.+|||||+.
T Consensus 341 ~~~vLVaT~~~~~GiDip~v~~VI~~~~p~s~~~y~Qr~GRagR~g 386 (579)
T 3sqw_A 341 ESGILVCTDVGARGMDFPNVHEVLQIGVPSELANYIHRIGRTARSG 386 (579)
T ss_dssp SSEEEEECGGGTSSCCCTTCCEEEEESCCSSTTHHHHHHTTSSCTT
T ss_pred CCeEEEEcchhhcCCCcccCCEEEEcCCCCCHHHhhhhccccccCC
Confidence 4589999999999999999999999999999999999999999953
No 118
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=96.40 E-value=0.0014 Score=64.65 Aligned_cols=45 Identities=47% Similarity=0.807 Sum_probs=41.9
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
...|+|||+++++|+|.++++.|++|..|.....|.|.+||+||.
T Consensus 326 ~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (417)
T 2i4i_A 326 KSPILVATAVAARGLDISNVKHVINFDLPSDIEEYVHRIGRTGRV 370 (417)
T ss_dssp SSCEEEECHHHHTTSCCCCEEEEEESSCCSSHHHHHHHHTTBCC-
T ss_pred CCCEEEECChhhcCCCcccCCEEEEEcCCCCHHHHHHhcCccccC
Confidence 458999999999999999999999999999999999999999983
No 119
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=96.33 E-value=0.024 Score=58.88 Aligned_cols=76 Identities=11% Similarity=0.125 Sum_probs=56.5
Q ss_pred CCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 126 PEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|..+.+||.. .+..+...+-+++..+-|+|||.+....++..+...+ +..++++.|+...|..+...++.+..
T Consensus 161 ~~~l~p~Q~~------i~~~l~~~r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~-~~~i~~va~t~~qA~~~~~~i~~~i~ 233 (592)
T 3cpe_A 161 KVQLRDYQRD------MLKIMSSKRMTVCNLSRQLGKTTVVAIFLAHFVCFNK-DKAVGILAHKGSMSAEVLDRTKQAIE 233 (592)
T ss_dssp BCCCCHHHHH------HHHHHHHCSEEEEEECSSSCHHHHHHHHHHHHHHTSS-SCEEEEEESSHHHHHHHHHHHHHHHT
T ss_pred cCcCCHHHHH------HHHhhccccEEEEEEcCccChHHHHHHHHHHHHHhCC-CCeEEEEECCHHHHHHHHHHHHHHHH
Confidence 4456777999 4443333567999999999999887655555444433 45899999999999999988888876
Q ss_pred cCC
Q psy1548 206 YMS 208 (448)
Q Consensus 206 ~~~ 208 (448)
..|
T Consensus 234 ~~p 236 (592)
T 3cpe_A 234 LLP 236 (592)
T ss_dssp TSC
T ss_pred hCh
Confidence 654
No 120
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=96.21 E-value=0.0028 Score=62.41 Aligned_cols=45 Identities=38% Similarity=1.006 Sum_probs=42.1
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|+|+++++|+|.++++.|++|..|.....|.|.+||+||.
T Consensus 326 ~~~vlv~T~~~~~Gidi~~v~~Vi~~~~p~s~~~~~Qr~GR~gR~ 370 (410)
T 2j0s_A 326 ASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRY 370 (410)
T ss_dssp SSCEEEECGGGSSSCCCTTEEEEEESSCCSSHHHHHHHHTTSSGG
T ss_pred CCCEEEECChhhCcCCcccCCEEEEECCCCCHHHHHHhcccccCC
Confidence 358999999999999999999999999999999999999999983
No 121
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=96.18 E-value=0.0027 Score=61.87 Aligned_cols=45 Identities=49% Similarity=0.985 Sum_probs=41.3
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCC------Cchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPE------DSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~------~~~~yQ~~~~~~~~~ 142 (448)
..+|+|+|+++++|+|.++++.|++|..|. ....|.|.+|||||.
T Consensus 293 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~ 343 (395)
T 3pey_A 293 RSKVLITTNVLARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRF 343 (395)
T ss_dssp SCCEEEECGGGSSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCT
T ss_pred CCCEEEECChhhcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccC
Confidence 347999999999999999999999999998 778999999999993
No 122
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=96.17 E-value=0.0039 Score=60.82 Aligned_cols=44 Identities=93% Similarity=1.376 Sum_probs=41.7
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
...|+|+|+++++|+|.+.++.|+++..|.....|.|.+||+||
T Consensus 300 ~~~vlv~T~~~~~Gidi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 343 (391)
T 1xti_A 300 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 343 (391)
T ss_dssp CCSEEEESCCCSSCBCCTTEEEEEESSCCSSHHHHHHHHCBCSS
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHhcccccC
Confidence 34899999999999999999999999999999999999999998
No 123
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=96.16 E-value=0.0036 Score=66.42 Aligned_cols=59 Identities=27% Similarity=0.374 Sum_probs=49.2
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeeccCCChhH
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKT 163 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT 163 (448)
..|+|||+++++|+|+++++.|++|+.|.....|.|.+||||+ .|..+++..+.++...
T Consensus 465 ~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr------~g~~~~l~~~~~~~~~ 523 (699)
T 4gl2_A 465 INLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARA------DESTYVLVAHSGSGVI 523 (699)
T ss_dssp -CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCS------SSCEEEEEEESSSCSH
T ss_pred CcEEEEccccccCCccccCCEEEEeCCCCCHHHHHHHcCCCCC------CCceEEEEEeCCchHH
Confidence 3899999999999999999999999999999999999999876 2456666666666533
No 124
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.12 E-value=0.036 Score=48.77 Aligned_cols=40 Identities=13% Similarity=0.255 Sum_probs=26.6
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..-.++||||+|.+.. .....+..++...+....+++.|.
T Consensus 101 ~~~~vliiDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~~~ 140 (226)
T 2chg_A 101 APFKIIFLDEADALTA--DAQAALRRTMEMYSKSCRFILSCN 140 (226)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred cCceEEEEeChhhcCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4557899999998755 344556666666666666666544
No 125
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=96.02 E-value=0.0029 Score=60.25 Aligned_cols=45 Identities=42% Similarity=0.832 Sum_probs=42.2
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|||+++++|+|.++++.|+++..|.....|.|.+|||||.
T Consensus 266 ~~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~gR~ 310 (337)
T 2z0m_A 266 EYDMLITTDVASRGLDIPLVEKVINFDAPQDLRTYIHRIGRTGRM 310 (337)
T ss_dssp SCSEEEECHHHHTTCCCCCBSEEEESSCCSSHHHHHHHHTTBCGG
T ss_pred CCcEEEEcCccccCCCccCCCEEEEecCCCCHHHhhHhcCccccC
Confidence 348999999999999999999999999999999999999999994
No 126
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=96.01 E-value=0.0036 Score=61.47 Aligned_cols=44 Identities=50% Similarity=0.984 Sum_probs=39.8
Q ss_pred ccceeEeeccccCCcccccceeEeeccCC------CCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p------~~~~~yQ~~~~~~~~ 141 (448)
..+|+|||+++++|+|.++++.|++|..| .....|.|.+|||||
T Consensus 316 ~~~vlv~T~~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR 365 (412)
T 3fht_A 316 KEKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 365 (412)
T ss_dssp SCSEEEECGGGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSC
T ss_pred CCcEEEEcCccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccC
Confidence 34799999999999999999999999999 456788999999998
No 127
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=95.98 E-value=0.007 Score=63.40 Aligned_cols=47 Identities=30% Similarity=0.320 Sum_probs=42.2
Q ss_pred hccceeEeeccccCCcccc--------cceeEeeccCCCCchhhhhhhccccccc
Q psy1548 97 DCWRILVATNLFGRGMDIE--------RVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 97 ~~~~~~~~~~~~~~~~d~~--------~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..+.|+|||+++|||+|+. ....|+++..|...+.|.+.+||+||..
T Consensus 521 ~~g~VtVATdmAgRGtDI~lg~~V~~~GglhVInte~Pes~r~y~qriGRTGRqG 575 (822)
T 3jux_A 521 QKGMVTIATNMAGRGTDIKLGPGVAELGGLCIIGTERHESRRIDNQLRGRAGRQG 575 (822)
T ss_dssp STTCEEEEETTTTTTCCCCCCTTTTTTTSCEEEESSCCSSHHHHHHHHTTSSCSS
T ss_pred CCCeEEEEcchhhCCcCccCCcchhhcCCCEEEecCCCCCHHHHHHhhCccccCC
Confidence 3569999999999999997 5569999999999999999999999954
No 128
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=95.97 E-value=0.0087 Score=53.94 Aligned_cols=113 Identities=17% Similarity=0.140 Sum_probs=60.9
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l 228 (448)
|.=+++.|++|+|||... +-++..+... +.+++++.|...-- -...+...+ ++.
T Consensus 12 G~i~litG~mGsGKTT~l-l~~~~r~~~~--g~kVli~~~~~d~r-----~~~~i~srl-G~~----------------- 65 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAEL-IRRLHRLEYA--DVKYLVFKPKIDTR-----SIRNIQSRT-GTS----------------- 65 (223)
T ss_dssp CEEEEEECSTTSCHHHHH-HHHHHHHHHT--TCCEEEEEECCCGG-----GCSSCCCCC-CCS-----------------
T ss_pred cEEEEEECCCCCcHHHHH-HHHHHHHHhc--CCEEEEEEeccCch-----HHHHHHHhc-CCC-----------------
Confidence 566788999999999764 3344443322 34688887765310 000111111 110
Q ss_pred hcCCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 229 ~~~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
...+.+.+...+...+..... -...++|||||++.+.. .....+..+.. ...++++..-
T Consensus 66 ---~~~~~~~~~~~i~~~i~~~~~-~~~~dvViIDEaQ~l~~--~~ve~l~~L~~---~gi~Vil~Gl 124 (223)
T 2b8t_A 66 ---LPSVEVESAPEILNYIMSNSF-NDETKVIGIDEVQFFDD--RICEVANILAE---NGFVVIISGL 124 (223)
T ss_dssp ---SCCEEESSTHHHHHHHHSTTS-CTTCCEEEECSGGGSCT--HHHHHHHHHHH---TTCEEEEECC
T ss_pred ---ccccccCCHHHHHHHHHHHhh-CCCCCEEEEecCccCcH--HHHHHHHHHHh---CCCeEEEEec
Confidence 023445666667776665322 24578999999996432 33333433332 2566666554
No 129
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=95.96 E-value=0.0041 Score=61.50 Aligned_cols=46 Identities=26% Similarity=0.448 Sum_probs=42.4
Q ss_pred ccceeEe----eccccCCccccc-ceeEeeccCC--CCchhhhhhhccccccc
Q psy1548 98 CWRILVA----TNLFGRGMDIER-VNIVFNYDMP--EDSDTYLHRVARAGRFG 143 (448)
Q Consensus 98 ~~~~~~~----~~~~~~~~d~~~-~~~v~~~~~p--~~~~~yQ~~~~~~~~~~ 143 (448)
..+|+|| |+++++|+|.++ ++.|++|..| .....|.|.+|||||..
T Consensus 297 ~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~~~~~y~qr~GR~gR~g 349 (414)
T 3oiy_A 297 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGPDVYTYIQASGRSSRIL 349 (414)
T ss_dssp SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTTCHHHHHHHHGGGCCEE
T ss_pred CCeEEEEecCcCchhhccCccccccCEEEEECCCCCCCHHHHHHHhCccccCC
Confidence 3489999 999999999999 9999999999 89999999999999943
No 130
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=95.95 E-value=0.0051 Score=65.52 Aligned_cols=46 Identities=30% Similarity=0.317 Sum_probs=42.6
Q ss_pred ccceeEeeccccCCcccc--------cceeEeeccCCCCchhhhhhhccccccc
Q psy1548 98 CWRILVATNLFGRGMDIE--------RVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~--------~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+.|+|||++++||+|.+ .+..|++++.|...+.|-+..||+||+.
T Consensus 480 ~g~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~s~r~y~hr~GRTGRqG 533 (844)
T 1tf5_A 480 KGAVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHESRRIDNQLRGRSGRQG 533 (844)
T ss_dssp TTCEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCSSHHHHHHHHTTSSGGG
T ss_pred CCeEEEeCCccccCcCccccchhhhcCCcEEEEecCCCCHHHHHhhcCccccCC
Confidence 368999999999999999 7789999999999999999999999954
No 131
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=95.92 E-value=0.013 Score=50.66 Aligned_cols=19 Identities=26% Similarity=0.385 Sum_probs=16.4
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+.+++.||+|+|||...
T Consensus 37 ~g~~~~l~G~~G~GKTtL~ 55 (180)
T 3ec2_A 37 EGKGLTFVGSPGVGKTHLA 55 (180)
T ss_dssp GCCEEEECCSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3788999999999999654
No 132
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=95.91 E-value=0.019 Score=50.02 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=25.6
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 190 (448)
|+=.++.||.|+|||...+ -++..... .+.+++++.|..
T Consensus 3 g~i~vi~G~~gsGKTT~ll-~~~~~~~~--~g~~v~~~~~~~ 41 (184)
T 2orw_A 3 GKLTVITGPMYSGKTTELL-SFVEIYKL--GKKKVAVFKPKI 41 (184)
T ss_dssp CCEEEEEESTTSSHHHHHH-HHHHHHHH--TTCEEEEEEEC-
T ss_pred cEEEEEECCCCCCHHHHHH-HHHHHHHH--CCCeEEEEeecc
Confidence 5567899999999997643 33333322 234788888885
No 133
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=95.91 E-value=0.0048 Score=60.65 Aligned_cols=43 Identities=44% Similarity=1.029 Sum_probs=36.2
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
.+|+|+|+++++|+|.++++.|+++..|.....|.|.+|||||
T Consensus 331 ~~vlv~T~~~~~Gidip~v~~Vi~~~~p~s~~~~~Qr~GR~gR 373 (414)
T 3eiq_A 331 SRVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGR 373 (414)
T ss_dssp --CEEECSSCC--CCGGGCSCEEESSCCSSTHHHHHHSCCC--
T ss_pred CcEEEECCccccCCCccCCCEEEEeCCCCCHHHhhhhcCcccC
Confidence 3799999999999999999999999999999999999999998
No 134
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=95.88 E-value=0.0043 Score=60.82 Aligned_cols=43 Identities=51% Similarity=1.005 Sum_probs=41.2
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..|+|+|+++++|+|.++++.|+++..|.....|.|.+|||||
T Consensus 309 ~~vLv~T~~~~~Gidip~~~~Vi~~~~p~s~~~~~Qr~GR~gR 351 (400)
T 1s2m_A 309 VRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGR 351 (400)
T ss_dssp SSEEEESSCSSSSCCCTTEEEEEESSCCSSHHHHHHHHCBSSC
T ss_pred CcEEEEcCccccCCCccCCCEEEEeCCCCCHHHHHHhcchhcC
Confidence 4899999999999999999999999999999999999999998
No 135
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=95.84 E-value=0.032 Score=53.01 Aligned_cols=25 Identities=8% Similarity=0.028 Sum_probs=18.9
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhh
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l 174 (448)
+.++++.||+|+|||.+.- .++..+
T Consensus 45 ~~~lli~GpPGTGKT~~v~-~v~~~L 69 (318)
T 3te6_A 45 NKLFYITNADDSTKFQLVN-DVMDEL 69 (318)
T ss_dssp CCEEEEECCCSHHHHHHHH-HHHHHH
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHH
Confidence 5789999999999997743 344444
No 136
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.78 E-value=0.018 Score=50.60 Aligned_cols=39 Identities=10% Similarity=0.084 Sum_probs=26.2
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 190 (448)
|+=.++.||+|+|||...+ -++.+... .+.+++++.|..
T Consensus 8 g~i~v~~G~mgsGKTT~ll-~~a~r~~~--~g~kV~v~k~~~ 46 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELI-RRIRRAKI--AKQKIQVFKPEI 46 (191)
T ss_dssp CEEEEEECSTTSSHHHHHH-HHHHHHHH--TTCCEEEEEEC-
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH--CCCEEEEEEecc
Confidence 4556889999999996644 44444332 345789998885
No 137
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.77 E-value=0.058 Score=52.19 Aligned_cols=19 Identities=37% Similarity=0.331 Sum_probs=16.1
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.||+|+|||...
T Consensus 43 ~~~~vll~G~~G~GKT~l~ 61 (387)
T 2v1u_A 43 KPSNALLYGLTGTGKTAVA 61 (387)
T ss_dssp CCCCEEECBCTTSSHHHHH
T ss_pred CCCcEEEECCCCCCHHHHH
Confidence 3578999999999999764
No 138
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=95.67 E-value=0.003 Score=60.88 Aligned_cols=44 Identities=43% Similarity=0.955 Sum_probs=41.5
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..|+|+|+++++|+|.++++.|+++..|.....|.|.+|||||.
T Consensus 289 ~~vlv~T~~~~~Gid~~~~~~Vi~~~~~~s~~~~~Q~~GR~~R~ 332 (367)
T 1hv8_A 289 IRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRA 332 (367)
T ss_dssp SSEEEECTTHHHHCCCSCCSEEEESSCCSCHHHHHHHSTTTCCS
T ss_pred CeEEEECChhhcCCCcccCCEEEEecCCCCHHHhhhcccccccC
Confidence 47999999999999999999999999999999999999999983
No 139
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=95.62 E-value=0.05 Score=51.69 Aligned_cols=36 Identities=19% Similarity=0.168 Sum_probs=22.4
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
+..+++.||+|+|||...- .+...+... +..++++.
T Consensus 37 ~~~lll~G~~GtGKT~la~-~i~~~~~~~--~~~~~~i~ 72 (324)
T 1l8q_A 37 YNPIFIYGSVGTGKTHLLQ-AAGNEAKKR--GYRVIYSS 72 (324)
T ss_dssp CSSEEEECSSSSSHHHHHH-HHHHHHHHT--TCCEEEEE
T ss_pred CCeEEEECCCCCcHHHHHH-HHHHHHHHC--CCEEEEEE
Confidence 4689999999999996642 333333322 23455554
No 140
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=95.62 E-value=0.0045 Score=65.62 Aligned_cols=44 Identities=30% Similarity=0.467 Sum_probs=28.3
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|||+++++|+|.++++.|++|+.|.....|.|.+|| ||.
T Consensus 461 ~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~ 504 (696)
T 2ykg_A 461 DHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRA 504 (696)
T ss_dssp CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------
T ss_pred CccEEEEechhhcCCcCccCCEEEEeCCCCCHHHHHHhhcc-CcC
Confidence 45899999999999999999999999999999999999999 984
No 141
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=95.61 E-value=0.0091 Score=60.89 Aligned_cols=45 Identities=53% Similarity=1.002 Sum_probs=30.7
Q ss_pred hccceeEeeccccCCcccccceeEeeccCC------CCchhhhhhhccccc
Q psy1548 97 DCWRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGR 141 (448)
Q Consensus 97 ~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p------~~~~~yQ~~~~~~~~ 141 (448)
...+|+|+|+++++|+|.++++.|+++..| .....|.|.+|||||
T Consensus 406 g~~~VLVaT~~l~~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR 456 (508)
T 3fho_A 406 GTSKVLVTTNVIARGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGR 456 (508)
T ss_dssp SSCCCCEECC-----CCCTTCCEEEC----CC-----CTHHHHHTTSCCC-
T ss_pred CCCeEEEeCChhhcCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCC
Confidence 345899999999999999999999999999 678889999999998
No 142
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=95.59 E-value=0.0062 Score=62.43 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=24.6
Q ss_pred HHHHHHhh--ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 90 EILRAIVD--CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+++.... ...|+|||+++++|+|+++++.|++|+.|.....|.|.+|| ||.
T Consensus 443 ~~~~~F~~~g~~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-gR~ 496 (556)
T 4a2p_A 443 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 496 (556)
T ss_dssp -----------CCEEEEEC-----------CEEEEETCCSCHHHHHHC-------
T ss_pred HHHHHhcccCceEEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 34444544 34899999999999999999999999999999999999999 773
No 143
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=95.59 E-value=0.0021 Score=65.04 Aligned_cols=43 Identities=51% Similarity=1.018 Sum_probs=0.0
Q ss_pred cceeEeeccccCCcccccceeEeeccCCC------Cchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPE------DSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~------~~~~yQ~~~~~~~~ 141 (448)
..|+|||+++++|+|+++++.|++|..|. .+..|.|.+|||||
T Consensus 384 ~~iLv~T~~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR 432 (479)
T 3fmp_B 384 EKVLVTTNVCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGR 432 (479)
T ss_dssp -------------------------------------------------
T ss_pred CcEEEEccccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhccccc
Confidence 47999999999999999999999999993 56788999999998
No 144
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=95.33 E-value=0.022 Score=50.67 Aligned_cols=40 Identities=10% Similarity=0.075 Sum_probs=25.5
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
|+=.++.++.|+|||...+ -.+.+... .+.+++++.|...
T Consensus 28 G~l~vitG~MgsGKTT~lL-~~a~r~~~--~g~kVli~k~~~d 67 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELI-RRVRRTQF--AKQHAIVFKPCID 67 (214)
T ss_dssp CEEEEEECSTTSCHHHHHH-HHHHHHHH--TTCCEEEEECC--
T ss_pred CEEEEEECCCCCcHHHHHH-HHHHHHHH--CCCEEEEEEeccC
Confidence 4445688999999997644 33333322 2457999998864
No 145
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.26 E-value=0.035 Score=53.89 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~G~GKT~la 62 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVS 62 (384)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 357999999999999764
No 146
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.23 E-value=0.12 Score=51.52 Aligned_cols=38 Identities=13% Similarity=0.218 Sum_probs=23.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
+..+++.||+|+|||..+. .+...+.....+..++++.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~-aia~~l~~~~~~~~v~~v~ 167 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQ-SIGNYVVQNEPDLRVMYIT 167 (440)
T ss_dssp SCCEEEECSSSSSHHHHHH-HHHHHHHHHCCSSCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHH-HHHHHHHHhCCCCeEEEee
Confidence 5689999999999996643 3333333322233455543
No 147
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=95.23 E-value=0.0079 Score=60.36 Aligned_cols=44 Identities=23% Similarity=0.413 Sum_probs=40.4
Q ss_pred cceeEeeccccCCcccccceeEeecc--------------------CCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYD--------------------MPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~--------------------~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+++++|+|.++ +.|++|. .|.....|.|.+|||||.-
T Consensus 235 ~~vLVaT~v~~~GiDip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~s~~~y~Qr~GRaGR~g 298 (451)
T 2jlq_A 235 WDFVVTTDISEMGANFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRNP 298 (451)
T ss_dssp CSEEEECGGGGSSCCCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred ceEEEECCHHHhCcCCCC-CEEEECCCcccccccccccceeeecccccCCHHHHHHhccccCCCC
Confidence 389999999999999999 9999987 8888999999999999954
No 148
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.19 E-value=0.013 Score=49.29 Aligned_cols=19 Identities=26% Similarity=0.398 Sum_probs=16.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|..+++.||+|+|||...
T Consensus 35 ~g~~~~l~G~~G~GKTtL~ 53 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLL 53 (149)
T ss_dssp CCSEEEEESSSTTTTCHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 7889999999999999653
No 149
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=95.18 E-value=0.0081 Score=61.41 Aligned_cols=50 Identities=30% Similarity=0.458 Sum_probs=39.8
Q ss_pred HHHHHhh--ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 91 ILRAIVD--CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 91 ~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
+++...+ ...|+|||+++++|+|.++++.|++|+.|.....|.|.+|| ||
T Consensus 443 ~~~~F~~~g~~~vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GR-gR 494 (555)
T 3tbk_A 443 VLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGR-GR 494 (555)
T ss_dssp ---------CCSEEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCC-CT
T ss_pred HHHHHhcCCCeeEEEEcchhhcCCccccCCEEEEeCCCCCHHHHHHhcCc-Cc
Confidence 4445544 34899999999999999999999999999999999999888 77
No 150
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=95.16 E-value=0.015 Score=52.35 Aligned_cols=19 Identities=16% Similarity=0.020 Sum_probs=16.2
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.||+|+|||...
T Consensus 51 ~~~~~ll~G~~G~GKT~la 69 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLI 69 (242)
T ss_dssp SCSEEEEECSTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4678999999999999654
No 151
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=95.14 E-value=0.21 Score=46.01 Aligned_cols=18 Identities=28% Similarity=0.311 Sum_probs=15.5
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 64 ~~~vLl~G~~GtGKT~la 81 (272)
T 1d2n_A 64 LVSVLLEGPPHSGKTALA 81 (272)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 358999999999999764
No 152
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=95.04 E-value=0.058 Score=44.72 Aligned_cols=20 Identities=10% Similarity=0.144 Sum_probs=17.0
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..+.++++.||+|+|||..+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA 41 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGA 41 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHH
T ss_pred CCCCCEEEECCCCCCHHHHH
Confidence 35678999999999999764
No 153
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=95.02 E-value=0.012 Score=63.40 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=28.9
Q ss_pred HHHHHHhh--ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 90 EILRAIVD--CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+++.... ...|+|||+++++|+|+++++.|++|+.|.....|.|.+|| ||.
T Consensus 684 ~~l~~F~~~g~~~vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GR-GR~ 737 (797)
T 4a2q_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (797)
T ss_dssp ----------CCSEEEEECC-------CCCSEEEEESCCSCHHHHHTC-------
T ss_pred HHHHHhhccCCceEEEEcCchhcCCCchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 34455544 34799999999999999999999999999999999999999 883
No 154
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=94.95 E-value=0.052 Score=52.63 Aligned_cols=35 Identities=11% Similarity=0.151 Sum_probs=21.5
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+++.||+|+|||... -.+...+.... +..++++.
T Consensus 46 ~~li~G~~G~GKTtl~-~~l~~~~~~~~-~~~~~~i~ 80 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTL-RKLWELYKDKT-TARFVYIN 80 (389)
T ss_dssp EEEEECCTTSSHHHHH-HHHHHHHTTSC-CCEEEEEE
T ss_pred eEEEECCCCCCHHHHH-HHHHHHHhhhc-CeeEEEEe
Confidence 7999999999999764 33334332221 23455554
No 155
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=94.88 E-value=0.0046 Score=60.29 Aligned_cols=44 Identities=45% Similarity=1.020 Sum_probs=0.0
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
..+|+|||+++++|+|.++++.|+++..|.....|.|.+||+||
T Consensus 309 ~~~vlv~T~~~~~Gldi~~~~~Vi~~~~p~s~~~~~Qr~GR~~R 352 (394)
T 1fuu_A 309 SSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGR 352 (394)
T ss_dssp --------------------------------------------
T ss_pred CCcEEEECChhhcCCCcccCCEEEEeCCCCCHHHHHHHcCcccC
Confidence 34799999999999999999999999999999999999999988
No 156
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=94.72 E-value=0.012 Score=59.29 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=36.8
Q ss_pred cceeEeeccccCCcccccceeEee--------------------ccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFN--------------------YDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~--------------------~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+++++|+|+++ +.|++ |+.|.....|.|.+|||||..
T Consensus 237 ~~iLVaT~v~~~GiDip~-~~VI~~G~~~~~~~~~~~~~~~~~~~d~p~s~~~~~QR~GRaGR~g 300 (459)
T 2z83_A 237 WDFVITTDISEMGANFGA-SRVIDCRKSVKPTILEEGEGRVILGNPSPITSASAAQRRGRVGRNP 300 (459)
T ss_dssp CSEEEESSCC---CCCSC-SEEEECCEECCEEEECSSSCEEEECSCEECCHHHHHHHHTTSSCCT
T ss_pred ceEEEECChHHhCeecCC-CEEEECCcccccccccccccccccccCCCCCHHHHHHhccccCCCC
Confidence 489999999999999999 99998 678999999999999999943
No 157
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=94.64 E-value=0.16 Score=47.65 Aligned_cols=19 Identities=26% Similarity=0.371 Sum_probs=16.3
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.++++.||+|+|||..+
T Consensus 66 ~~~~vll~G~~GtGKT~la 84 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVA 84 (309)
T ss_dssp CCCEEEEEECTTSSHHHHH
T ss_pred CCceEEEECCCCCCHHHHH
Confidence 4568999999999999764
No 158
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=94.57 E-value=0.02 Score=60.28 Aligned_cols=54 Identities=28% Similarity=0.449 Sum_probs=45.6
Q ss_pred cceeEeeccccCCcccccceeEeeccC-----CCCchhhhhhhccccccceeeeeCcceeeec
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDM-----PEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~-----p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~a 156 (448)
..|+|+|+++++|+|.++++.|++++. |...+.|-|.+|||||. ..|+.+++..
T Consensus 496 ~~VLVaT~~l~~GlDip~v~lVi~~d~d~~G~p~s~~~~iQr~GRagR~----~~G~~i~~~~ 554 (661)
T 2d7d_A 496 YDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN----AEGRVIMYAD 554 (661)
T ss_dssp CSEEEESCCCSTTCCCTTEEEEEETTTTCCTTTTSHHHHHHHHHTTTTS----TTCEEEEECS
T ss_pred eEEEEecchhhCCcccCCCCEEEEeCcccccCCCCHHHHHHHhCcccCC----CCCEEEEEEe
Confidence 479999999999999999999999986 88999999999999994 2455554443
No 159
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=94.51 E-value=0.018 Score=57.27 Aligned_cols=53 Identities=28% Similarity=0.438 Sum_probs=44.8
Q ss_pred HHHHHhh-ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 91 ILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 91 ~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
+++...+ ...|+|+|++.++|+|.+.++.|++|+.|.....|.|.+|||||..
T Consensus 411 ~~~~F~~~~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g 464 (494)
T 1wp9_A 411 ILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGRTGRHM 464 (494)
T ss_dssp HHHHHHHTSCSEEEECGGGGGGGGSTTCCEEEESSCCHHHHHHHHHHTTSCSCC
T ss_pred HHHHHhcCCceEEEECCccccCCCchhCCEEEEeCCCCCHHHHHHHHhhccCCC
Confidence 3444433 3489999999999999999999999999998888899999999954
No 160
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=94.46 E-value=0.021 Score=62.77 Aligned_cols=52 Identities=29% Similarity=0.456 Sum_probs=29.8
Q ss_pred HHHHHHhh--ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 90 EILRAIVD--CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
++++.+.. ...|+|||+++++|+|.++++.|++|+.|.....|.|.+|| ||.
T Consensus 684 ~il~~Fr~~g~~~VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GR-GR~ 737 (936)
T 4a2w_A 684 GVLDAFKTSKDNRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGR-GRA 737 (936)
T ss_dssp ----------CCSEEEEECC------CCCCSEEEEESCCSCSHHHHCC-------
T ss_pred HHHHHhhccCCeeEEEEeCchhcCCcchhCCEEEEeCCCCCHHHHHHhcCC-CCC
Confidence 34455544 34799999999999999999999999999999999999999 774
No 161
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.44 E-value=0.14 Score=49.10 Aligned_cols=43 Identities=14% Similarity=0.329 Sum_probs=29.7
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
.+.+++++||+|. ++. .....+...+...+.+..+|+.|....
T Consensus 133 ~~~~vlilDE~~~-L~~-~~~~~L~~~le~~~~~~~~Il~t~~~~ 175 (354)
T 1sxj_E 133 HRYKCVIINEANS-LTK-DAQAALRRTMEKYSKNIRLIMVCDSMS 175 (354)
T ss_dssp -CCEEEEEECTTS-SCH-HHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CCCeEEEEeCccc-cCH-HHHHHHHHHHHhhcCCCEEEEEeCCHH
Confidence 4567999999998 444 556667777777766766666665543
No 162
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=94.43 E-value=0.015 Score=58.15 Aligned_cols=52 Identities=19% Similarity=0.203 Sum_probs=40.1
Q ss_pred HHHHHHh-hccceeEeeccccCCcccccceeEee-------------------ccCCCCchhhhhhhcccccc
Q psy1548 90 EILRAIV-DCWRILVATNLFGRGMDIERVNIVFN-------------------YDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 90 ~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~v~~-------------------~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..++.+. ...+|+|||+++++|+|.+ ++.|++ +..|.....|.|.+||+||.
T Consensus 214 ~~~~~F~~g~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~~~~~~vi~~~~p~~~~~~~Qr~GR~GR~ 285 (440)
T 1yks_A 214 REYPTIKQKKPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVDEGRKVAIKGPLRISASSAAQRRGRIGRN 285 (440)
T ss_dssp --------CCCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEETTTTEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred HHHhhhcCCCceEEEECChhheeeccC-ceEEEeCCccceeeecccccceeeccccccCHHHHHHhccccCCC
Confidence 3344443 3458999999999999999 999886 78899999999999999994
No 163
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=94.38 E-value=0.1 Score=49.45 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=27.0
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEecc
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT 297 (448)
...+++++||+|.+... .....+..++...+.+.++|+.+..
T Consensus 104 ~~~~vliiDEi~~l~~~-~~~~~L~~~le~~~~~~~iI~~~n~ 145 (324)
T 3u61_B 104 GRQKVIVIDEFDRSGLA-ESQRHLRSFMEAYSSNCSIIITANN 145 (324)
T ss_dssp SCEEEEEEESCCCGGGH-HHHHHHHHHHHHHGGGCEEEEEESS
T ss_pred CCCeEEEEECCcccCcH-HHHHHHHHHHHhCCCCcEEEEEeCC
Confidence 36688999999988622 3444555555555566677664443
No 164
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=94.37 E-value=0.024 Score=59.72 Aligned_cols=44 Identities=30% Similarity=0.480 Sum_probs=40.8
Q ss_pred cceeEeeccccCCcccccceeEeeccC-----CCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDM-----PEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~-----p~~~~~yQ~~~~~~~~~ 142 (448)
..|+|+|+++++|+|.++++.|++++. |.....|-|.+|||||.
T Consensus 490 ~~VLvaT~~l~~GlDip~v~lVI~~d~d~~G~p~s~~~~iQr~GRagR~ 538 (664)
T 1c4o_A 490 YDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARN 538 (664)
T ss_dssp CSEEEESCCCCTTCCCTTEEEEEETTTTSCSGGGSHHHHHHHHGGGTTS
T ss_pred ceEEEccChhhcCccCCCCCEEEEeCCcccCCCCCHHHHHHHHCccCcC
Confidence 479999999999999999999999986 88889999999999994
No 165
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=94.27 E-value=0.024 Score=59.73 Aligned_cols=44 Identities=34% Similarity=0.653 Sum_probs=39.7
Q ss_pred cceeEeeccccCCcccccceeEeeccC--------------CCCchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDM--------------PEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~--------------p~~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+++++|+|. +++.|+++.. |.....|.|.+|||||..
T Consensus 373 ~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~~~G~~~~~p~s~~~~~QR~GRAGR~g 430 (677)
T 3rc3_A 373 CKILVATDAIGMGLNL-SIRRIIFYSLIKPSINEKGERELEPITTSQALQIAGRAGRFS 430 (677)
T ss_dssp CCEEEECGGGGSSCCC-CBSEEEESCSBC-----------CBCCHHHHHHHHTTBTCTT
T ss_pred eEEEEeCcHHHCCcCc-CccEEEECCccccccccCCccccccCCHHHHHHHhcCCCCCC
Confidence 4899999999999999 9999999887 667889999999999954
No 166
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=94.23 E-value=0.05 Score=57.41 Aligned_cols=65 Identities=14% Similarity=0.038 Sum_probs=49.6
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
|++ ++.. .+.+++|.|+.|||||.+..--+...+.. .....++|+|+.|+..+.++.+.+....+
T Consensus 7 Q~~------av~~--~~~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~ 72 (673)
T 1uaa_A 7 QQQ------AVEF--VTGPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLG 72 (673)
T ss_dssp HHH------HHHC--CSSEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSC
T ss_pred HHH------HHhC--CCCCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcC
Confidence 888 5543 26789999999999998765555555543 22345899999999999999999887654
No 167
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.22 E-value=0.013 Score=62.83 Aligned_cols=44 Identities=23% Similarity=0.418 Sum_probs=40.4
Q ss_pred cceeEeeccccCCcccccceeEeeccC------------------CCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDM------------------PEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~------------------p~~~~~yQ~~~~~~~~~ 142 (448)
.+|.|||+++++|+|.++++.|+++.. |.+...|.|.+|||||.
T Consensus 370 ~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~S~~s~~QR~GRaGR~ 431 (773)
T 2xau_A 370 RKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPISKASAQQRAGRAGRT 431 (773)
T ss_dssp EEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEECCHHHHHHHHHGGGSS
T ss_pred eEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccCCHHHHHhhccccCCC
Confidence 379999999999999999999999776 78889999999999995
No 168
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=94.14 E-value=0.08 Score=47.10 Aligned_cols=40 Identities=15% Similarity=0.048 Sum_probs=26.0
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
|.=.++.+|.|+|||... +..+...... +.+++++.|...
T Consensus 28 G~I~vitG~M~sGKTT~L-lr~~~r~~~~--g~kvli~kp~~D 67 (219)
T 3e2i_A 28 GWIECITGSMFSGKSEEL-IRRLRRGIYA--KQKVVVFKPAID 67 (219)
T ss_dssp CEEEEEEECTTSCHHHHH-HHHHHHHHHT--TCCEEEEEEC--
T ss_pred ceEEEEECCCCCCHHHHH-HHHHHHHHHc--CCceEEEEeccC
Confidence 555688999999999654 4444444332 347899988764
No 169
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=94.12 E-value=0.032 Score=59.34 Aligned_cols=46 Identities=30% Similarity=0.329 Sum_probs=41.7
Q ss_pred ccceeEeeccccCCccccc--------------------------------c-----eeEeeccCCCCchhhhhhhcccc
Q psy1548 98 CWRILVATNLFGRGMDIER--------------------------------V-----NIVFNYDMPEDSDTYLHRVARAG 140 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~--------------------------------~-----~~v~~~~~p~~~~~yQ~~~~~~~ 140 (448)
.|.|.||||++|||+|... | ..|+++..|...+.|-+..||+|
T Consensus 489 ~G~VtIATnmAgRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pes~riy~qr~GRTG 568 (853)
T 2fsf_A 489 PAAVTIATNMAGRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHESRRIDNQLRGRSG 568 (853)
T ss_dssp TTCEEEEESCCSSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCSSHHHHHHHHTTSS
T ss_pred CCeEEEecccccCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCCCHHHHHhhccccc
Confidence 4689999999999999986 4 58999999999999999999999
Q ss_pred ccc
Q psy1548 141 RFG 143 (448)
Q Consensus 141 ~~~ 143 (448)
|..
T Consensus 569 RqG 571 (853)
T 2fsf_A 569 RQG 571 (853)
T ss_dssp GGG
T ss_pred cCC
Confidence 954
No 170
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=94.05 E-value=0.052 Score=61.39 Aligned_cols=62 Identities=26% Similarity=0.319 Sum_probs=49.3
Q ss_pred hhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhccC---CCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 133 LHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTD---SNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 133 Q~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~---~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
|++ ++..- +++++|.|+.|||||.+.+--++..+.... ...+++++++|++.+..+.+.+..
T Consensus 15 Q~~------~i~~~--~~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~ 79 (1232)
T 3u4q_A 15 QWN------AIVST--GQDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAE 79 (1232)
T ss_dssp HHH------HHHCC--SSCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHH
T ss_pred HHH------HHhCC--CCCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHH
Confidence 888 66543 889999999999999887666666665432 345899999999999998887766
No 171
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.93 E-value=0.24 Score=49.09 Aligned_cols=134 Identities=13% Similarity=0.157 Sum_probs=72.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEE 226 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~ 226 (448)
+.-+++.||+|+|||.....-+ ..+... +.+++++. +.+.-+.+ .+..+.... ++.+.....+.
T Consensus 97 ~~vI~lvG~~GsGKTTt~~kLA-~~l~~~--G~kVllv~~D~~r~~a~e---qL~~~~~~~-gv~~~~~~~~~------- 162 (433)
T 3kl4_A 97 PFIIMLVGVQGSGKTTTAGKLA-YFYKKR--GYKVGLVAADVYRPAAYD---QLLQLGNQI-GVQVYGEPNNQ------- 162 (433)
T ss_dssp SEEEEECCCTTSCHHHHHHHHH-HHHHHT--TCCEEEEEECCSCHHHHH---HHHHHHHTT-TCCEECCTTCS-------
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHHc--CCeEEEEecCccchhHHH---HHHHHHHhc-CCceeeccccC-------
Confidence 5678889999999997643322 222222 33565555 34443322 344444333 43332111110
Q ss_pred HHhcCCCcEEEEcHHHHH-HHHHCCCCcCCCeeEEEecchhHHH--hhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHH
Q psy1548 227 YLKTHNPQIVVGTPGRIL-ALVRNKKLNLSLLKHFILDECDKML--EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303 (448)
Q Consensus 227 ~l~~~~~~IlV~Tp~~l~-~~l~~~~~~~~~i~~lViDEah~l~--~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~ 303 (448)
.|..+. ..+.. ......+++++|++-++. ....+...+..+.+...+..-++.++|+...+..
T Consensus 163 ------------dp~~i~~~al~~--a~~~~~DvvIIDTaGr~~~~~d~~lm~el~~i~~~~~pd~vlLVlDa~~gq~a~ 228 (433)
T 3kl4_A 163 ------------NPIEIAKKGVDI--FVKNKMDIIIVDTAGRHGYGEETKLLEEMKEMYDVLKPDDVILVIDASIGQKAY 228 (433)
T ss_dssp ------------CHHHHHHHHHHH--TTTTTCSEEEEEECCCSSSCCTTHHHHHHHHHHHHHCCSEEEEEEEGGGGGGGH
T ss_pred ------------CHHHHHHHHHHH--HHhcCCCEEEEECCCCccccCCHHHHHHHHHHHHhhCCcceEEEEeCccchHHH
Confidence 122221 12221 112456789999997643 2225666777777766666667788888766666
Q ss_pred HHHHHhc
Q psy1548 304 PVCKKFM 310 (448)
Q Consensus 304 ~~~~~~l 310 (448)
..+..|.
T Consensus 229 ~~a~~f~ 235 (433)
T 3kl4_A 229 DLASRFH 235 (433)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 6666554
No 172
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=93.81 E-value=0.21 Score=46.97 Aligned_cols=40 Identities=13% Similarity=0.275 Sum_probs=26.4
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..-.++|+||+|.+.. .....+...+...+....+|+.+.
T Consensus 109 ~~~~vliiDe~~~l~~--~~~~~L~~~le~~~~~~~~i~~~~ 148 (327)
T 1iqp_A 109 ASFKIIFLDEADALTQ--DAQQALRRTMEMFSSNVRFILSCN 148 (327)
T ss_dssp CSCEEEEEETGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CCCeEEEEeCCCcCCH--HHHHHHHHHHHhcCCCCeEEEEeC
Confidence 4567899999998755 334455566666666666666543
No 173
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=93.77 E-value=0.14 Score=46.08 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=26.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
|+=.++.|+.|+|||...+-. +.+.. ..+.+++++-|...
T Consensus 19 g~l~v~~G~MgsGKTT~lL~~-~~r~~--~~g~kvli~kp~~D 58 (234)
T 2orv_A 19 GQIQVILGPMFSGKSTELMRR-VRRFQ--IAQYKCLVIKYAKD 58 (234)
T ss_dssp CEEEEEECCTTSCHHHHHHHH-HHHHH--TTTCCEEEEEETTC
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHH--HCCCeEEEEeecCC
Confidence 565678899999999664433 33332 23457888888764
No 174
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=93.76 E-value=0.08 Score=56.35 Aligned_cols=70 Identities=14% Similarity=0.095 Sum_probs=51.7
Q ss_pred CCCCchhhhhhhccccccceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 125 MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 125 ~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
..++- |++ ++.. .+.+++|.|+.|||||.+..--+...+.. .-...++|+|+.|+..|.++.+.+..+
T Consensus 11 ~Ln~~---Q~~------av~~--~~g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~ 79 (724)
T 1pjr_A 11 HLNKE---QQE------AVRT--TEGPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSL 79 (724)
T ss_dssp TSCHH---HHH------HHHC--CSSCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHH
T ss_pred hCCHH---HHH------HHhC--CCCCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHH
Confidence 34455 888 6544 35789999999999998865555555543 223457999999999999999888876
Q ss_pred hc
Q psy1548 204 SK 205 (448)
Q Consensus 204 ~~ 205 (448)
.+
T Consensus 80 l~ 81 (724)
T 1pjr_A 80 LG 81 (724)
T ss_dssp HG
T ss_pred hc
Confidence 43
No 175
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=93.59 E-value=0.52 Score=43.42 Aligned_cols=20 Identities=30% Similarity=0.245 Sum_probs=16.6
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..++.+++.||+|+|||...
T Consensus 49 ~~~~~~ll~G~~GtGKT~la 68 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLA 68 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHH
T ss_pred CCCCeEEEECCCCCcHHHHH
Confidence 34678999999999999664
No 176
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=93.56 E-value=0.074 Score=46.55 Aligned_cols=38 Identities=13% Similarity=0.118 Sum_probs=25.3
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeecc
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 189 (448)
|+=.++.||.|+|||.-.+-. +...... +.+++++.|.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~-i~n~~~~--~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRR-VRRFQIA--QYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHH-HHHHHHT--TCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHH-HHHHHHc--CCeEEEEccc
Confidence 566789999999999553333 3333222 3578888887
No 177
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=93.52 E-value=0.029 Score=58.52 Aligned_cols=44 Identities=23% Similarity=0.385 Sum_probs=38.6
Q ss_pred ccceeEeeccccCCcccccceeE--------------------eeccCCCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIV--------------------FNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v--------------------~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
..+|+|||+++++|+|.+ ++.| ++|..|.....|.|.+|||||.
T Consensus 401 ~~~VLVaTdv~~rGiDi~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~s~~~yiQR~GRaGR~ 464 (618)
T 2whx_A 401 DWDFVVTTDISEMGANFR-AGRVIDPRRCLKPVILTDGPERVILAGPIPVTPASAAQRRGRIGRN 464 (618)
T ss_dssp CCSEEEECGGGGTTCCCC-CSEEEECCEEEEEEEECSSSCEEEEEEEEECCHHHHHHHHTTSSCC
T ss_pred CcEEEEECcHHHcCcccC-ceEEEECcceecceecccCCCceEEcccccCCHHHHHHhccccCCC
Confidence 348999999999999996 8777 6777789999999999999994
No 178
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=93.40 E-value=0.13 Score=56.99 Aligned_cols=37 Identities=16% Similarity=0.179 Sum_probs=25.7
Q ss_pred HHHHHHh-hccceeEe----eccccCCcccccc-eeEeeccCC
Q psy1548 90 EILRAIV-DCWRILVA----TNLFGRGMDIERV-NIVFNYDMP 126 (448)
Q Consensus 90 ~~~~~~~-~~~~~~~~----~~~~~~~~d~~~~-~~v~~~~~p 126 (448)
..++.+. ...+|+|| |+++++|+|.++| +.|+++..|
T Consensus 310 ~~l~~F~~G~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 310 GDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHHHHHHTSCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHHHHHHcCCCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 4444443 34589999 9999999999996 999999999
No 179
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=93.39 E-value=0.033 Score=58.65 Aligned_cols=43 Identities=21% Similarity=0.373 Sum_probs=38.4
Q ss_pred cceeEeeccccCCcccccceeEee--------------------ccCCCCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFN--------------------YDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~--------------------~~~p~~~~~yQ~~~~~~~~~ 142 (448)
.+|+|||+++++|+|.+ ++.|++ |+.|.....|.|.+||+||.
T Consensus 457 ~~VLVaTdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~s~~~y~Qr~GRaGR~ 519 (673)
T 2wv9_A 457 WDFVITTDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAITSASAAQRRGRVGRN 519 (673)
T ss_dssp CSEEEECGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEECCHHHHHHHHTTSSCC
T ss_pred ceEEEECchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCCCHHHHHHHhhccCCC
Confidence 37999999999999999 999987 55788888999999999994
No 180
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.36 E-value=0.19 Score=48.02 Aligned_cols=39 Identities=18% Similarity=0.331 Sum_probs=27.0
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++|+||+|.+.. .....+...+...+....+++.+
T Consensus 109 ~~~~viiiDe~~~l~~--~~~~~L~~~le~~~~~~~~il~~ 147 (340)
T 1sxj_C 109 KGFKLIILDEADAMTN--AAQNALRRVIERYTKNTRFCVLA 147 (340)
T ss_dssp CSCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEE
T ss_pred CCceEEEEeCCCCCCH--HHHHHHHHHHhcCCCCeEEEEEe
Confidence 4578999999998865 34455666677766666666554
No 181
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.31 E-value=0.17 Score=48.25 Aligned_cols=39 Identities=18% Similarity=0.304 Sum_probs=26.0
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
..+++++||+|.+.. .....+..++...+....+++.+.
T Consensus 133 ~~~vliiDE~~~l~~--~~~~~Ll~~le~~~~~~~~il~~~ 171 (353)
T 1sxj_D 133 PYKIIILDEADSMTA--DAQSALRRTMETYSGVTRFCLICN 171 (353)
T ss_dssp SCEEEEETTGGGSCH--HHHHHHHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECCCccCH--HHHHHHHHHHHhcCCCceEEEEeC
Confidence 457899999998765 334555566666666666666543
No 182
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=93.23 E-value=0.039 Score=55.38 Aligned_cols=46 Identities=20% Similarity=0.388 Sum_probs=42.1
Q ss_pred ccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
...|+|+|+++++|+|.+++..|+++..|.....|.|.+|||||..
T Consensus 394 ~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~s~~~~~Q~~GR~~R~g 439 (472)
T 2fwr_A 394 RFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 439 (472)
T ss_dssp SCSBCBCSSCCCSSSCSCCBSEEEEECCSSCCHHHHHHHHHSBCCC
T ss_pred CCCEEEEcCchhcCcccccCcEEEEECCCCCHHHHHHHHhhccCCC
Confidence 3489999999999999999999999999999989999999999943
No 183
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=93.21 E-value=0.042 Score=58.39 Aligned_cols=57 Identities=19% Similarity=0.282 Sum_probs=42.1
Q ss_pred CCCHHHHHHHhh-----ccceeEeeccccCCcccccceeEee----cc-------CCCCchhhhhhhcccccc
Q psy1548 86 LLKPEILRAIVD-----CWRILVATNLFGRGMDIERVNIVFN----YD-------MPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 86 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~v~~----~~-------~p~~~~~yQ~~~~~~~~~ 142 (448)
+++++..+.+.+ ..+|.|||+.+++|+|.++++.|++ |+ .|.+...|.|.+|||||.
T Consensus 321 ~l~~~~r~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~s~~~~~Qr~GRaGR~ 393 (715)
T 2va8_A 321 GLSKALRDLIEEGFRQRKIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEIPIMEYKQMSGRAGRP 393 (715)
T ss_dssp TSCHHHHHHHHHHHHTTCSCEEEECGGGGGSSCCCBSEEEECCC--------------CHHHHHHHHTTBCCT
T ss_pred CCCHHHHHHHHHHHHcCCCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcCCHHHHHHHhhhcCCC
Confidence 344444444433 3489999999999999999999998 87 788889999999999994
No 184
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=93.16 E-value=0.13 Score=49.51 Aligned_cols=18 Identities=39% Similarity=0.477 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.||+|+|||...
T Consensus 45 ~~~vli~G~~G~GKTtl~ 62 (386)
T 2qby_A 45 PNNIFIYGLTGTGKTAVV 62 (386)
T ss_dssp CCCEEEEECTTSSHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 568999999999999664
No 185
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=93.15 E-value=0.35 Score=45.56 Aligned_cols=39 Identities=15% Similarity=0.340 Sum_probs=25.6
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
...+++||||+|.|... -...+.+.+..-|+...+|+.+
T Consensus 81 ~~~kvviIdead~lt~~--a~naLLk~LEep~~~t~fIl~t 119 (305)
T 2gno_A 81 YTRKYVIVHDCERMTQQ--AANAFLKALEEPPEYAVIVLNT 119 (305)
T ss_dssp SSSEEEEETTGGGBCHH--HHHHTHHHHHSCCTTEEEEEEE
T ss_pred CCceEEEeccHHHhCHH--HHHHHHHHHhCCCCCeEEEEEE
Confidence 45789999999988653 3344555566555555555554
No 186
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=93.10 E-value=0.15 Score=47.95 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=25.4
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
.-+++||||+|.+... ....+...+...+....+++.|.
T Consensus 107 ~~~viiiDe~~~l~~~--~~~~L~~~le~~~~~~~~il~~~ 145 (323)
T 1sxj_B 107 KHKIVILDEADSMTAG--AQQALRRTMELYSNSTRFAFACN 145 (323)
T ss_dssp CCEEEEEESGGGSCHH--HHHTTHHHHHHTTTTEEEEEEES
T ss_pred CceEEEEECcccCCHH--HHHHHHHHHhccCCCceEEEEeC
Confidence 3678999999987553 23344555566566666666553
No 187
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=93.04 E-value=0.33 Score=46.30 Aligned_cols=40 Identities=5% Similarity=0.091 Sum_probs=24.1
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
...+++||||+|.|... ....+.+.+..-+.+..+|+.|.
T Consensus 107 ~~~kvviIdead~l~~~--a~naLLk~lEep~~~~~~Il~t~ 146 (334)
T 1a5t_A 107 GGAKVVWVTDAALLTDA--AANALLKTLEEPPAETWFFLATR 146 (334)
T ss_dssp SSCEEEEESCGGGBCHH--HHHHHHHHHTSCCTTEEEEEEES
T ss_pred CCcEEEEECchhhcCHH--HHHHHHHHhcCCCCCeEEEEEeC
Confidence 56789999999988653 23334444444444455555443
No 188
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.01 E-value=0.026 Score=59.09 Aligned_cols=42 Identities=26% Similarity=0.438 Sum_probs=37.2
Q ss_pred cceeEeeccccCCcccccceeEe----------ecc-----------CCCCchhhhhhhccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVF----------NYD-----------MPEDSDTYLHRVARAGR 141 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~----------~~~-----------~p~~~~~yQ~~~~~~~~ 141 (448)
.+|+|||+++++|||.+ ++.|+ ||+ .|.....|-|.+||+||
T Consensus 440 ~~VLVATdVaerGIDId-V~~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~s~~syiQRiGRtGR 502 (666)
T 3o8b_A 440 DVVVVATDALMTGYTGD-FDSVIDCNTCVTQTVDFSLDPTFTIETTTVPQDAVSRSQRRGRTGR 502 (666)
T ss_dssp CEEEEECTTHHHHCCCC-BSEEEECCEEEEEEEECCCSSSCEEEEEEEECBHHHHHHHHTTBCS
T ss_pred CcEEEECChHHccCCCC-CcEEEecCcccccccccccccccccccccCcCCHHHHHHHhccCCC
Confidence 38999999999999985 88877 566 78888999999999999
No 189
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=92.99 E-value=0.77 Score=40.43 Aligned_cols=39 Identities=10% Similarity=0.281 Sum_probs=23.7
Q ss_pred CeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEec
Q psy1548 256 LLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSA 296 (448)
Q Consensus 256 ~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SA 296 (448)
.-.++||||+|.+.. .....+...+...+....+|+.|.
T Consensus 126 ~~~vlviDe~~~l~~--~~~~~l~~~l~~~~~~~~~i~~t~ 164 (250)
T 1njg_A 126 RFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLATT 164 (250)
T ss_dssp SSEEEEEETGGGSCH--HHHHHHHHHHHSCCTTEEEEEEES
T ss_pred CceEEEEECcccccH--HHHHHHHHHHhcCCCceEEEEEeC
Confidence 346899999998644 334445555555555555555543
No 190
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=92.95 E-value=0.062 Score=57.46 Aligned_cols=46 Identities=33% Similarity=0.304 Sum_probs=41.6
Q ss_pred ccceeEeeccccCCcccccc----------------------------------------------------eeEeeccC
Q psy1548 98 CWRILVATNLFGRGMDIERV----------------------------------------------------NIVFNYDM 125 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~----------------------------------------------------~~v~~~~~ 125 (448)
.|.|.||||++|||+|...+ ..|+++..
T Consensus 508 ~G~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGlhVI~te~ 587 (922)
T 1nkt_A 508 RGGVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAGGLYVLGTER 587 (922)
T ss_dssp TTCEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTSEEEEECSC
T ss_pred CCeEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcCCcEEEeccC
Confidence 46999999999999999964 58999999
Q ss_pred CCCchhhhhhhccccccc
Q psy1548 126 PEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 126 p~~~~~yQ~~~~~~~~~~ 143 (448)
|...+.|-|..||+||..
T Consensus 588 pes~riy~qr~GRTGRqG 605 (922)
T 1nkt_A 588 HESRRIDNQLRGRSGRQG 605 (922)
T ss_dssp CSSHHHHHHHHHTSSGGG
T ss_pred CCCHHHHHHHhcccccCC
Confidence 999999999999999944
No 191
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=92.89 E-value=0.068 Score=57.21 Aligned_cols=54 Identities=20% Similarity=0.325 Sum_probs=43.8
Q ss_pred HHHHHHHhh-ccceeEeeccccCCcccccceeEeeccCCC-Cchhhhhhhcccccc
Q psy1548 89 PEILRAIVD-CWRILVATNLFGRGMDIERVNIVFNYDMPE-DSDTYLHRVARAGRF 142 (448)
Q Consensus 89 ~~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~-~~~~yQ~~~~~~~~~ 142 (448)
..+++.+.+ ..+|+|||+++++|+|.++++.|++++.|. ....+.|.+||+||.
T Consensus 629 ~~v~~~F~~G~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~ 684 (780)
T 1gm5_A 629 DRVMLEFAEGRYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRG 684 (780)
T ss_dssp HHHHHHHTTTSSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCS
T ss_pred HHHHHHHHCCCCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcC
Confidence 455555543 358999999999999999999999999885 566667888999983
No 192
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=92.53 E-value=0.051 Score=54.07 Aligned_cols=53 Identities=13% Similarity=0.214 Sum_probs=41.6
Q ss_pred HHHHHHhh-ccceeEeeccccCCccccccee-----------------EeeccCCCCchhhhhhhccccccc
Q psy1548 90 EILRAIVD-CWRILVATNLFGRGMDIERVNI-----------------VFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 90 ~~~~~~~~-~~~~~~~~~~~~~~~d~~~~~~-----------------v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
.+++.+.+ ...|+|||+++++|+|.+ +.. ++++..|.....|.|.+||+||.-
T Consensus 208 ~~~~~f~~g~~~vLVaT~v~e~GiDip-~~~VI~~g~~~~~v~d~~~~vi~~~~p~~~~~~~Qr~GR~GR~g 278 (431)
T 2v6i_A 208 SEYPKCKSEKWDFVITTDISEMGANFK-ADRVIDPRKTIKPILLDGRVSMQGPIAITPASAAQRRGRIGRNP 278 (431)
T ss_dssp HHTTHHHHSCCSEEEECGGGGTSCCCC-CSEEEECCEEEEEEEETTEEEEEEEEECCHHHHHHHHTTSSCCT
T ss_pred HHHHhhcCCCCeEEEECchHHcCcccC-CcEEEecCccccceecccceeecccccCCHHHHHHhhhccCCCC
Confidence 34444433 348999999999999998 544 567788999999999999999943
No 193
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=92.52 E-value=1 Score=39.34 Aligned_cols=51 Identities=20% Similarity=0.319 Sum_probs=36.2
Q ss_pred CCeeEEEecchhHHHhhhh--hHHHHHHHHHhCCCCCeEEEEeccCCccHHHHH
Q psy1548 255 SLLKHFILDECDKMLEQLE--MRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~--~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~ 306 (448)
..+++||+||+-..+.. + -.+.+..++...|...-+|+.+--.|+++.+.+
T Consensus 119 ~~yDlvILDEi~~al~~-g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~A 171 (196)
T 1g5t_A 119 PLLDMVVLDELTYMVAY-DYLPLEEVISALNARPGHQTVIITGRGCHRDILDLA 171 (196)
T ss_dssp TTCSEEEEETHHHHHHT-TSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHC
T ss_pred CCCCEEEEeCCCccccC-CCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhC
Confidence 56789999999876554 3 245566777777777777777777777766654
No 194
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=92.41 E-value=0.094 Score=57.88 Aligned_cols=58 Identities=29% Similarity=0.440 Sum_probs=45.9
Q ss_pred CCCHHHHHHHhh-----ccceeEeeccccCCcccccceeEee----ccC----CCCchhhhhhhccccccc
Q psy1548 86 LLKPEILRAIVD-----CWRILVATNLFGRGMDIERVNIVFN----YDM----PEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 86 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~v~~----~~~----p~~~~~yQ~~~~~~~~~~ 143 (448)
++.+...+.+.+ ..+|+|||+.+++|+|.+.++.|++ |+. |.....|.|.+|||||..
T Consensus 415 gl~~~eR~~ve~~F~~G~ikVLVAT~~la~GIDiP~~~vVI~~~~kfd~~~~rp~s~~~y~Qr~GRAGR~G 485 (1010)
T 2xgj_A 415 GLLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 485 (1010)
T ss_dssp TSCHHHHHHHHHHHHTTCCSEEEEEGGGGGSTTCCBSEEEESCSEEECSSCEEECCHHHHHHHHTTBCCTT
T ss_pred CCCHHHHHHHHHHHhcCCCcEEEEehHhhccCCCCCceEEEeCCcccCCcCCccCCHHHHhHhhhhcccCC
Confidence 445544444332 2379999999999999999999999 887 778889999999999953
No 195
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=92.29 E-value=0.044 Score=55.58 Aligned_cols=45 Identities=20% Similarity=0.230 Sum_probs=41.8
Q ss_pred cceeEee-ccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 99 WRILVAT-NLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~-~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..|+||| +++++|+|.+.++.|+.+..|.....|.|.+||+||..
T Consensus 398 ~~vLv~T~~~~~~GiDip~v~~vi~~~~~~s~~~~~Q~~GR~gR~g 443 (510)
T 2oca_A 398 GIIIVASYGVFSTGISVKNLHHVVLAHGVKSKIIVLQTIGRVLRKH 443 (510)
T ss_dssp SCEEEEEHHHHHHSCCCCSEEEEEESSCCCSCCHHHHHHHHHHTTT
T ss_pred CCEEEEEcChhhcccccccCcEEEEeCCCCCHHHHHHHHhcccccC
Confidence 3799999 99999999999999999999999888999999999954
No 196
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=92.24 E-value=0.056 Score=57.54 Aligned_cols=58 Identities=19% Similarity=0.271 Sum_probs=44.7
Q ss_pred cceeEeeccccCCcccccceeEee----cc----CCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFN----YD----MPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~----~~----~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
-+|.|||+.+++|+|.+.++.|++ |+ .|.+...|.|.+|||||.-.. ..|.-+++..+
T Consensus 321 ~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~s~~~~~Qr~GRaGR~g~~-~~G~~~~l~~~ 386 (720)
T 2zj8_A 321 IKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERIPIIEVHQMLGRAGRPKYD-EVGEGIIVSTS 386 (720)
T ss_dssp SCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEECCHHHHHHHHTTBCCTTTC-SEEEEEEECSS
T ss_pred CeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccCCHHHHHHHHhhcCCCCCC-CCceEEEEecC
Confidence 389999999999999999999998 55 477888999999999994311 12444555443
No 197
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=91.98 E-value=0.067 Score=56.70 Aligned_cols=58 Identities=24% Similarity=0.364 Sum_probs=45.6
Q ss_pred CCCHHHHHHHhh-----ccceeEeeccccCCcccccceeEee----cc---CCCCchhhhhhhccccccc
Q psy1548 86 LLKPEILRAIVD-----CWRILVATNLFGRGMDIERVNIVFN----YD---MPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 86 ~~~~~~~~~~~~-----~~~~~~~~~~~~~~~d~~~~~~v~~----~~---~p~~~~~yQ~~~~~~~~~~ 143 (448)
+++++..+.+.+ ..+|.|||+.+++|+|.++++.|++ |+ .|.+..+|.|.+|||||.-
T Consensus 305 ~l~~~~R~~v~~~f~~g~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~s~~~~~Qr~GRaGR~g 374 (702)
T 2p6r_A 305 GLLNGQRRVVEDAFRRGNIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 374 (702)
T ss_dssp TSCHHHHHHHHHHHHTTSCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEECCHHHHHHHHTTBSCTT
T ss_pred CCCHHHHHHHHHHHHCCCCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcCCHHHHHHHhhhcCCCC
Confidence 455554444433 2389999999999999999999998 54 6778889999999999943
No 198
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=91.80 E-value=0.58 Score=45.53 Aligned_cols=18 Identities=22% Similarity=0.565 Sum_probs=14.9
Q ss_pred Ccceee--eccCCChhHHHH
Q psy1548 149 GMDILC--QAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli--~apTGsGKT~~~ 166 (448)
+..+++ .||.|+|||...
T Consensus 50 ~~~~li~i~G~~G~GKT~L~ 69 (412)
T 1w5s_A 50 DVNMIYGSIGRVGIGKTTLA 69 (412)
T ss_dssp CEEEEEECTTCCSSSHHHHH
T ss_pred CCEEEEeCcCcCCCCHHHHH
Confidence 457888 999999999764
No 199
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=91.65 E-value=0.11 Score=53.80 Aligned_cols=44 Identities=20% Similarity=0.293 Sum_probs=41.0
Q ss_pred eeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccce
Q psy1548 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144 (448)
Q Consensus 101 ~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~ 144 (448)
|.|+|+++++|+|.+.+..|+++..|.....|.|.+||++|..+
T Consensus 502 ilvtt~~l~~GiDip~v~~Vi~~~~~~s~~~~~Q~iGR~~R~~~ 545 (590)
T 3h1t_A 502 ILTTSQLLTTGVDAPTCKNVVLARVVNSMSEFKQIVGRGTRLRE 545 (590)
T ss_dssp EEEESSTTTTTCCCTTEEEEEEESCCCCHHHHHHHHTTSCCCBG
T ss_pred EEEECChhhcCccchheeEEEEEecCCChHHHHHHHhhhcccCc
Confidence 78899999999999999999999999999999999999999654
No 200
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=91.61 E-value=0.06 Score=60.05 Aligned_cols=45 Identities=29% Similarity=0.485 Sum_probs=35.4
Q ss_pred cceeEeeccccCCcccccceeEeeccCCC--------Cchhhhhhhccccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPE--------DSDTYLHRVARAGRFG 143 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~--------~~~~yQ~~~~~~~~~~ 143 (448)
.+|+|||+.+++|+|.++++.|+++..|. ....|.|.+|||||..
T Consensus 531 ikVLVAT~vla~GIDiP~v~~VI~~~~~~d~~~~r~iS~~eyiQr~GRAGR~G 583 (1108)
T 3l9o_A 531 LKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYIQMSGRAGRRG 583 (1108)
T ss_dssp CCEEEEESCCCSCCCC--CEEEESCSEEESSSCEEECCHHHHHHHHHHSCCSS
T ss_pred CeEEEECcHHhcCCCCCCceEEEecCcccCccccccCCHHHHHHhhcccCCCC
Confidence 38999999999999999999999776543 3345889999999943
No 201
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=91.50 E-value=0.54 Score=45.09 Aligned_cols=39 Identities=10% Similarity=0.279 Sum_probs=24.5
Q ss_pred CCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEe
Q psy1548 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295 (448)
Q Consensus 255 ~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~S 295 (448)
..-+++||||+|.+.. .....+...+...+....+|+.+
T Consensus 118 ~~~~vliiDe~~~l~~--~~~~~Ll~~le~~~~~~~~Il~~ 156 (373)
T 1jr3_A 118 GRFKVYLIDEVHMLSR--HSFNALLKTLEEPPEHVKFLLAT 156 (373)
T ss_dssp SSSEEEEEECGGGSCH--HHHHHHHHHHHSCCSSEEEEEEE
T ss_pred CCeEEEEEECcchhcH--HHHHHHHHHHhcCCCceEEEEEe
Confidence 4457899999998755 33444555555555555555544
No 202
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=91.20 E-value=0.11 Score=48.02 Aligned_cols=51 Identities=18% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHhhc--cc-eeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 91 ILRAIVDC--WR-ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 91 ~~~~~~~~--~~-~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
+++..... .. ++++|.+.++|+|.+....|++|+.|+....|.|.+||++|
T Consensus 155 ~i~~F~~~~~~~v~L~st~~~g~Glnl~~a~~VI~~d~~wnp~~~~Q~~gR~~R 208 (271)
T 1z5z_A 155 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYR 208 (271)
T ss_dssp HHHHHHHCTTCCEEEEECCTTCCCCCCTTCSEEEECSCCSCTTTC---------
T ss_pred HHHHhcCCCCCCEEEEehhhhcCCcCcccCCEEEEECCCCChhHHHHHHHhccc
Confidence 44444443 23 68999999999999999999999999998888999899887
No 203
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.13 E-value=0.26 Score=49.25 Aligned_cols=42 Identities=21% Similarity=0.177 Sum_probs=26.1
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
.+..|.-+++.|++|+|||...+--+.+ +... .+..++|+..
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~-~~~~-~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQN-VATK-TNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHH-HHHH-SSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHH-HHHh-CCCcEEEEEC
Confidence 3445778999999999999654433333 3221 1335777763
No 204
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=91.08 E-value=1.4 Score=43.05 Aligned_cols=57 Identities=14% Similarity=0.076 Sum_probs=35.3
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+.-+|++.+=-.+..+.+.+.- ..++.+|. .|+.. .++ -.+.+|+.||
T Consensus 143 p~v~~~dIgGl~~~k~~l~e~v--------------------~~Pl~~pe---~f~~~------gi~---~prGvLL~GP 190 (405)
T 4b4t_J 143 PDSTYDMVGGLTKQIKEIKEVI--------------------ELPVKHPE---LFESL------GIA---QPKGVILYGP 190 (405)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT--------------------HHHHHCHH---HHHHH------TCC---CCCCEEEESC
T ss_pred CCCCHHHhCCHHHHHHHHHHHH--------------------HHHHhCHH---HHHhC------CCC---CCCceEEeCC
Confidence 4457888776677777776653 00123332 23444 222 2478999999
Q ss_pred CCChhHHHH
Q psy1548 158 SGMGKTAVF 166 (448)
Q Consensus 158 TGsGKT~~~ 166 (448)
.|+|||+.+
T Consensus 191 PGTGKTllA 199 (405)
T 4b4t_J 191 PGTGKTLLA 199 (405)
T ss_dssp SSSSHHHHH
T ss_pred CCCCHHHHH
Confidence 999999764
No 205
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=90.86 E-value=0.093 Score=58.48 Aligned_cols=30 Identities=23% Similarity=0.454 Sum_probs=28.3
Q ss_pred ccceeEe----eccccCCccccc-ceeEeeccCCC
Q psy1548 98 CWRILVA----TNLFGRGMDIER-VNIVFNYDMPE 127 (448)
Q Consensus 98 ~~~~~~~----~~~~~~~~d~~~-~~~v~~~~~p~ 127 (448)
..+|+|| |+++++|+|+++ ++.|++|+.|.
T Consensus 354 ~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 354 KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 3589999 999999999999 99999999998
No 206
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=90.78 E-value=0.7 Score=45.77 Aligned_cols=57 Identities=21% Similarity=0.266 Sum_probs=32.6
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHHHHHHHHHhhccCCCceE
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQISKEYERFSKYMSNIKV 212 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q~~~~~~~~~~~~~~~~v 212 (448)
+.-+++.+++|+|||....--+ ..+.. .+.+++++. |.+.-+.+ +++.+.... ++.+
T Consensus 100 p~vIlivG~~G~GKTTt~~kLA-~~l~~--~G~kVllv~~D~~R~aa~e---qL~~~~~~~-gvpv 158 (443)
T 3dm5_A 100 PTILLMVGIQGSGKTTTVAKLA-RYFQK--RGYKVGVVCSDTWRPGAYH---QLRQLLDRY-HIEV 158 (443)
T ss_dssp SEEEEEECCTTSSHHHHHHHHH-HHHHT--TTCCEEEEECCCSSTHHHH---HHHHHHGGG-TCEE
T ss_pred CeEEEEECcCCCCHHHHHHHHH-HHHHH--CCCeEEEEeCCCcchhHHH---HHHHHHHhc-CCcE
Confidence 4568899999999997653222 22322 234566665 55554433 455555444 5544
No 207
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=90.63 E-value=0.92 Score=45.56 Aligned_cols=87 Identities=11% Similarity=0.113 Sum_probs=55.1
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcC-------cc
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGG-------LP 220 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~-------~~ 220 (448)
.|....+.+-||||||++..- +... . +..+|||+|+...|.|+++.++.|.. + .+..+-.- ..
T Consensus 13 ~~~~~~l~g~~gs~ka~~~a~-l~~~----~-~~p~lvv~~~~~~A~~l~~~l~~~~~---~-~v~~fp~~e~lpyd~~~ 82 (483)
T 3hjh_A 13 AGEQRLLGELTGAACATLVAE-IAER----H-AGPVVLIAPDMQNALRLHDEISQFTD---Q-MVMNLADWETLPYDSFS 82 (483)
T ss_dssp TTCEEEEECCCTTHHHHHHHH-HHHH----S-SSCEEEEESSHHHHHHHHHHHHHTCS---S-CEEECCCCCSCTTCSSC
T ss_pred CCCeEEEeCCCchHHHHHHHH-HHHH----h-CCCEEEEeCCHHHHHHHHHHHHhhCC---C-cEEEEeCcccccccccC
Confidence 466788999999999976332 2222 1 22589999999999999999998863 2 23333221 00
Q ss_pred cH-----Hh---HHHHhcCCCcEEEEcHHHHH
Q psy1548 221 IQ-----KD---EEYLKTHNPQIVVGTPGRIL 244 (448)
Q Consensus 221 ~~-----~~---~~~l~~~~~~IlV~Tp~~l~ 244 (448)
.. .. ...+..+...|+|+|+..++
T Consensus 83 p~~~~~~~Rl~~l~~L~~~~~~ivv~sv~al~ 114 (483)
T 3hjh_A 83 PHQDIISSRLSTLYQLPTMQRGVLIVPVNTLM 114 (483)
T ss_dssp CCHHHHHHHHHHHHHGGGCCSSEEEEEHHHHH
T ss_pred CChHHHHHHHHHHHHHHhCCCCEEEEEHHHHh
Confidence 00 11 12333445679999987765
No 208
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.15 E-value=0.36 Score=48.04 Aligned_cols=42 Identities=21% Similarity=0.093 Sum_probs=25.9
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
.+..|.-+++.|++|+|||...+--+.+.... .+..++++..
T Consensus 196 Gl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~--~g~~vl~~sl 237 (444)
T 2q6t_A 196 TLGPGSLNIIAARPAMGKTAFALTIAQNAALK--EGVGVGIYSL 237 (444)
T ss_dssp CCCTTCEEEEEECTTSCHHHHHHHHHHHHHHT--TCCCEEEEES
T ss_pred CcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHh--CCCeEEEEEC
Confidence 34456788999999999996543333333221 1335777664
No 209
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.01 E-value=3.3 Score=40.73 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+-+|+.||+|+|||+.+
T Consensus 206 prGiLL~GPPGtGKT~la 223 (428)
T 4b4t_K 206 PRGVLLYGPPGTGKTMLV 223 (428)
T ss_dssp CCEEEEESCTTTTHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 210
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.90 E-value=0.46 Score=45.39 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=26.4
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
.+..|.-+++.|++|+|||...+--+.+... .+..++|++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~---~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALN---DDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHH---TTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH---cCCeEEEEeC
Confidence 3445677899999999999654433333322 3446777763
No 211
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=89.90 E-value=0.099 Score=57.65 Aligned_cols=43 Identities=23% Similarity=0.389 Sum_probs=34.4
Q ss_pred cceeEeeccccCCcccccceeEeeccCC---------CCchhhhhhhcccccc
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMP---------EDSDTYLHRVARAGRF 142 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p---------~~~~~yQ~~~~~~~~~ 142 (448)
.+|+|||+++++|+|.++ +.|+....| .....|.|.+|||||.
T Consensus 426 ~kVLvAT~~~a~GIDiP~-~~VVi~~~~k~dg~~~~~~s~~~y~Qr~GRAGR~ 477 (997)
T 4a4z_A 426 IKVLFATETFAMGLNLPT-RTVIFSSIRKHDGNGLRELTPGEFTQMAGRAGRR 477 (997)
T ss_dssp CSEEEECTHHHHSCCCCC-SEEEESCSEEEETTEEEECCHHHHHHHHGGGCCT
T ss_pred CcEEEEchHhhCCCCCCC-ceEEEeccccccCccCCCCCHHHHhHHhcccccC
Confidence 489999999999999999 444443333 3778899999999994
No 212
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=89.57 E-value=0.91 Score=40.00 Aligned_cols=22 Identities=27% Similarity=0.253 Sum_probs=18.2
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|.-+++.||+|+|||...
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~ 40 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFS 40 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHH
Confidence 4556888999999999999554
No 213
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=89.53 E-value=0.17 Score=55.57 Aligned_cols=55 Identities=16% Similarity=0.318 Sum_probs=47.3
Q ss_pred HHHHHHHhhc---cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccc
Q psy1548 89 PEILRAIVDC---WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143 (448)
Q Consensus 89 ~~~~~~~~~~---~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~ 143 (448)
..+++...+. ..|+|||++.++|+|.+.+..|++|+.|.....|.|.+||++|..
T Consensus 544 ~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~~~~~~~Q~~GR~~R~G 601 (968)
T 3dmq_A 544 DRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPFNPDLLEQRIGRLDRIG 601 (968)
T ss_dssp HHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCSSHHHHHHHHHTTSCSS
T ss_pred HHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCCCHHHHHHHhhccccCC
Confidence 4455555543 579999999999999999999999999999999999999999854
No 214
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=89.36 E-value=0.71 Score=41.36 Aligned_cols=23 Identities=26% Similarity=0.310 Sum_probs=19.0
Q ss_pred eeeeCcceeeeccCCChhHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~ 167 (448)
.+..|.-+.+.||+|+|||....
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~ 48 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAA 48 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHH
Confidence 55678899999999999996543
No 215
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=89.31 E-value=0.12 Score=48.36 Aligned_cols=16 Identities=38% Similarity=0.528 Sum_probs=13.9
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
++++.||+|+|||...
T Consensus 40 ~~ll~G~~G~GKt~la 55 (319)
T 2chq_A 40 HLLFSGPPGTGKTATA 55 (319)
T ss_dssp CEEEESSSSSSHHHHH
T ss_pred eEEEECcCCcCHHHHH
Confidence 5899999999999654
No 216
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=89.21 E-value=1.4 Score=45.86 Aligned_cols=116 Identities=11% Similarity=0.083 Sum_probs=65.6
Q ss_pred CCCeEEEEeccCCccHHHHHHHhcCCCeEEEEcCcccccccceeEEEEE-cC-----cch-----HHHHHHHHHhhCCCC
Q psy1548 287 HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVK-LK-----ENE-----KNKKLFELLDVLEFN 355 (448)
Q Consensus 287 ~~~q~i~~SAT~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~i~~~~~~-~~-----~~~-----k~~~L~~ll~~~~~~ 355 (448)
....+|++|||+.+ ...+...+.-.+..+..... ....+..-.+.. ++ .+. -...+..++... ++
T Consensus 374 ~~~~~il~SaTL~p-~~~~~~~lGl~~~~~~~~sp--f~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~i~~l~~~~-~g 449 (620)
T 4a15_A 374 KESKTIHMSGTLDP-FDFYSDITGFEIPFKKIGEI--FPPENRYIAYYDGVSSKYDTLDEKELDRMATVIEDIILKV-KK 449 (620)
T ss_dssp GGSEEEEEESSCCS-HHHHHHHHCCCCCEEECCCC--SCGGGEEEEEECCC-------CHHHHHHHHHHHHHHHHHH-CS
T ss_pred hCCeEEEEccCCCc-HHHHHHHhCCCceeeecCCC--CCHHHeEEEEeCCCCCcCCCCCHHHHHHHHHHHHHHHHhC-CC
Confidence 45679999999986 44444443322333333222 112222111110 11 011 112233444433 46
Q ss_pred eEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEE
Q psy1548 356 QVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410 (448)
Q Consensus 356 ~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~ 410 (448)
.++||++|....+.+++.|+. +... ...+++..+|..++++|+ ++.++.+.
T Consensus 450 ~~lvlF~Sy~~l~~v~~~l~~--~~~~-~~q~~~~~~~~~ll~~f~-~~~~vL~~ 500 (620)
T 4a15_A 450 NTIVYFPSYSLMDRVENRVSF--EHMK-EYRGIDQKELYSMLKKFR-RDHGTIFA 500 (620)
T ss_dssp CEEEEESCHHHHHHHTSSCCS--CCEE-CCTTCCSHHHHHHHHHHT-TSCCEEEE
T ss_pred CEEEEeCCHHHHHHHHHHHHh--cchh-ccCCCChhHHHHHHHHhc-cCCcEEEE
Confidence 799999999999999998873 3322 566677778999999999 55444333
No 217
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=88.93 E-value=2.4 Score=42.57 Aligned_cols=18 Identities=33% Similarity=0.368 Sum_probs=15.7
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 238 ~~~vLL~GppGtGKT~lA 255 (489)
T 3hu3_A 238 PRGILLYGPPGTGKTLIA 255 (489)
T ss_dssp CCEEEEECSTTSSHHHHH
T ss_pred CCcEEEECcCCCCHHHHH
Confidence 467999999999999764
No 218
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=88.72 E-value=1.8 Score=38.39 Aligned_cols=44 Identities=9% Similarity=-0.084 Sum_probs=27.0
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhcc---CCCeEEEEeec
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCH 188 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~P 188 (448)
.+..|.-+++.+|+|+|||.....-+...+... ..+..++++..
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~ 66 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDT 66 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEEC
Confidence 456688899999999999976544333322211 01235666653
No 219
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=87.29 E-value=0.68 Score=43.71 Aligned_cols=52 Identities=8% Similarity=-0.075 Sum_probs=31.4
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhh
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~ 204 (448)
.| -+++.+|.|+|||...+-.+.+ ......+.+++++..-..+... .++++.
T Consensus 28 ~G-iteI~G~pGsGKTtL~Lq~~~~-~~~~g~g~~vlyId~E~s~~~~---ra~~lG 79 (333)
T 3io5_A 28 SG-LLILAGPSKSFKSNFGLTMVSS-YMRQYPDAVCLFYDSEFGITPA---YLRSMG 79 (333)
T ss_dssp SE-EEEEEESSSSSHHHHHHHHHHH-HHHHCTTCEEEEEESSCCCCHH---HHHHTT
T ss_pred CC-eEEEECCCCCCHHHHHHHHHHH-HHhcCCCceEEEEeccchhhHH---HHHHhC
Confidence 35 5899999999999664433333 3222224478888865554322 355554
No 220
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=87.23 E-value=0.36 Score=54.09 Aligned_cols=45 Identities=22% Similarity=0.284 Sum_probs=38.5
Q ss_pred ccceeEeeccccCCcccccceeEeeccC-CCCchhhhhhhcccccc
Q psy1548 98 CWRILVATNLFGRGMDIERVNIVFNYDM-PEDSDTYLHRVARAGRF 142 (448)
Q Consensus 98 ~~~~~~~~~~~~~~~d~~~~~~v~~~~~-p~~~~~yQ~~~~~~~~~ 142 (448)
...|+|||+++++|+|.++++.|+.+.. +..+..|.|.+||+||.
T Consensus 864 ~~~VLVaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~ 909 (1151)
T 2eyq_A 864 RFNVLVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRS 909 (1151)
T ss_dssp SCCEEEESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBT
T ss_pred CCcEEEECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcC
Confidence 3489999999999999999999987665 45777788999999994
No 221
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=86.96 E-value=1.5 Score=40.94 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.5
Q ss_pred eCcceeeeccCCChhHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~ 167 (448)
.|+-+++.+|+|+|||....
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~ 123 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLA 123 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHH
Confidence 46788999999999997643
No 222
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=86.73 E-value=0.47 Score=49.47 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=55.9
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhccCCCceEEEEEcCcccHHhHHHHhc
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKT 230 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~l~~ 230 (448)
-.++.|+-|.|||.+..+.+-.. . ..++|.+|+.+=+..+. .+...
T Consensus 194 ~~vlta~RGRGKSa~lG~~~a~~-~-----~~~~vtAP~~~a~~~l~----~~~~~------------------------ 239 (671)
T 2zpa_A 194 VAAVTAARGRGKSALAGQLISRI-A-----GRAIVTAPAKASTDVLA----QFAGE------------------------ 239 (671)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHS-S-----SCEEEECSSCCSCHHHH----HHHGG------------------------
T ss_pred eEEEecCCCCCHHHHHHHHHHHH-H-----hCcEEECCCHHHHHHHH----HHhhC------------------------
Confidence 46899999999997655544432 2 13688999987554332 22210
Q ss_pred CCCcEEEEcHHHHHHHHHCCCCcCCCeeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 231 HNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 231 ~~~~IlV~Tp~~l~~~l~~~~~~~~~i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
.|-+..|+.+. . ...+.+++|||||=.+.- +.+..++... ..++||.|+.
T Consensus 240 ---~i~~~~Pd~~~---~----~~~~~dlliVDEAAaIp~-----pll~~ll~~~----~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ---KFRFIAPDALL---A----SDEQADWLVVDEAAAIPA-----PLLHQLVSRF----PRTLLTTTVQ 289 (671)
T ss_dssp ---GCCBCCHHHHH---H----SCCCCSEEEEETGGGSCH-----HHHHHHHTTS----SEEEEEEEBS
T ss_pred ---CeEEeCchhhh---h----CcccCCEEEEEchhcCCH-----HHHHHHHhhC----CeEEEEecCC
Confidence 12233565432 1 134578999999985533 3344444432 2467777753
No 223
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=86.69 E-value=4.2 Score=31.16 Aligned_cols=47 Identities=15% Similarity=0.227 Sum_probs=38.3
Q ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 357 VVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 357 ~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
.++|.+..+-...+...+++.|..+..++++.....|.+.+++|...
T Consensus 5 fvvfssdpeilkeivreikrqgvrvvllysdqdekrrrerleefekq 51 (162)
T 2l82_A 5 FVVFSSDPEILKEIVREIKRQGVRVVLLYSDQDEKRRRERLEEFEKQ 51 (162)
T ss_dssp EEEEESCHHHHHHHHHHHHHTTCEEEEEECCSCHHHHHHHHHHHHTT
T ss_pred EEEecCCHHHHHHHHHHHHhCCeEEEEEecCchHHHHHHHHHHHHHc
Confidence 45677777777788888888899999999998888888888888763
No 224
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=85.78 E-value=0.62 Score=54.53 Aligned_cols=44 Identities=9% Similarity=0.003 Sum_probs=29.8
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
-+..|+++++.+|+|+|||..+...+.... ..+.+++++..-..
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~---~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ---REGKTCAFIDAEHA 1466 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHH---TTTCCEEEECTTSC
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH---HcCCcEEEEEcccc
Confidence 455689999999999999976544333332 23447887775543
No 225
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=85.49 E-value=0.8 Score=44.05 Aligned_cols=43 Identities=12% Similarity=0.050 Sum_probs=27.9
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTR 190 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~ 190 (448)
-+..|.-+++.+|+|+|||... +.++..+... +..++++..-.
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLa-l~la~~~~~~--gg~VlyId~E~ 99 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLA-LHAIAEAQKM--GGVAAFIDAEH 99 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHH-HHHHHHHHHT--TCCEEEEESSC
T ss_pred CccCCcEEEEECCCCCCHHHHH-HHHHHHHHhc--CCeEEEEeccc
Confidence 4556788999999999999543 4444333322 33677776543
No 226
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=83.88 E-value=0.44 Score=39.14 Aligned_cols=18 Identities=11% Similarity=0.099 Sum_probs=15.9
Q ss_pred eCcceeeeccCCChhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~ 165 (448)
.+.++++.||+|+|||..
T Consensus 26 ~~~~vll~G~~GtGKt~l 43 (143)
T 3co5_A 26 RTSPVFLTGEAGSPFETV 43 (143)
T ss_dssp CSSCEEEEEETTCCHHHH
T ss_pred CCCcEEEECCCCccHHHH
Confidence 467899999999999965
No 227
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=82.19 E-value=1.2 Score=44.01 Aligned_cols=44 Identities=9% Similarity=0.078 Sum_probs=31.3
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 194 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~ 194 (448)
...++++.|+||+|||... -+++..+... +..++|+=|..++..
T Consensus 52 ~~~h~~i~G~tGsGKs~~~-~~li~~~~~~--g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 52 EPRHLLVNGATGTGKSVLL-RELAYTGLLR--GDRMVIVDPNGDMLS 95 (437)
T ss_dssp GGGCEEEEECTTSSHHHHH-HHHHHHHHHT--TCEEEEEEETTHHHH
T ss_pred CcceEEEECCCCCCHHHHH-HHHHHHHHHC--CCcEEEEeCCCchhH
Confidence 4579999999999999874 3344443332 347888889888754
No 228
>3gk5_A Uncharacterized rhodanese-related protein TVG0868615; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.40A {Thermoplasma volcanium GSS1}
Probab=82.18 E-value=1.1 Score=34.85 Aligned_cols=44 Identities=18% Similarity=0.268 Sum_probs=36.1
Q ss_pred HHHhhC-CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 347 ELLDVL-EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 347 ~ll~~~-~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
..+... ...++++||.+-.++...+..|++.|+++..+.||+..
T Consensus 47 ~~~~~l~~~~~ivvyC~~G~rs~~aa~~L~~~G~~v~~l~GG~~~ 91 (108)
T 3gk5_A 47 EKWKILERDKKYAVICAHGNRSAAAVEFLSQLGLNIVDVEGGIQS 91 (108)
T ss_dssp HHGGGSCTTSCEEEECSSSHHHHHHHHHHHTTTCCEEEETTHHHH
T ss_pred HHHHhCCCCCeEEEEcCCCcHHHHHHHHHHHcCCCEEEEcCcHHH
Confidence 334443 34589999999999999999999999999999999654
No 229
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=81.77 E-value=0.74 Score=46.24 Aligned_cols=52 Identities=17% Similarity=0.210 Sum_probs=39.3
Q ss_pred HHHHHhhcc--c-eeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 91 ILRAIVDCW--R-ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 91 ~~~~~~~~~--~-~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
+++...+.. . ++++|.+.+.|+|.+....|++++.|.....|.|.+||++|.
T Consensus 384 ~~~~F~~~~~~~vil~st~~~~~Glnl~~~~~vi~~d~~~~~~~~~Q~~gR~~R~ 438 (500)
T 1z63_A 384 IISKFQNNPSVKFIVLSVKAGGFGINLTSANRVIHFDRWWNPAVEDQATDRVYRI 438 (500)
T ss_dssp HHHHHHHCTTCCCCEEECCCC-CCCCCTTCSEEEESSCCSCC---CHHHHTTTTT
T ss_pred HHHHhcCCCCCCEEEEecccccCCCchhhCCEEEEeCCCCCcchHHHHHHHHHHc
Confidence 444444432 2 688999999999999999999999999888889999998883
No 230
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=81.52 E-value=3.2 Score=44.10 Aligned_cols=16 Identities=25% Similarity=0.486 Sum_probs=14.3
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
++++.||||+|||..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA 538 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELA 538 (758)
T ss_dssp EEEEESCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 5999999999999764
No 231
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=81.49 E-value=2.2 Score=41.09 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=27.1
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeecc
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 189 (448)
-+..|.-+++.+++|+|||... +.++..+... +..++|+..-
T Consensus 70 Gl~~G~li~I~G~pGsGKTtla-l~la~~~~~~--g~~vlyi~~E 111 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLA-LAIVAQAQKA--GGTCAFIDAE 111 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHH-HHHHHHHHHT--TCCEEEEESS
T ss_pred CccCCcEEEEEcCCCCChHHHH-HHHHHHHHHC--CCeEEEEECC
Confidence 4556788999999999999654 3333333222 2357777644
No 232
>3foj_A Uncharacterized protein; protein SSP1007, structural genomics, PSI-2, protein structure initiative; 1.60A {Staphylococcus saprophyticus subsp}
Probab=81.43 E-value=1.1 Score=34.04 Aligned_cols=38 Identities=21% Similarity=0.316 Sum_probs=33.2
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
+..++++||.+-.++...+..|++.|+++..+.||+..
T Consensus 55 ~~~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~~ 92 (100)
T 3foj_A 55 DNETYYIICKAGGRSAQVVQYLEQNGVNAVNVEGGMDE 92 (100)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCEEEEETTHHHH
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHCCCCEEEecccHHH
Confidence 34689999999999999999999999999999998643
No 233
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=80.92 E-value=1.8 Score=38.58 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=32.5
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.+..|.-+++.||+|+|||....--+..... . +..++++.... -..++.+.+..+
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~-~--~~~v~~~~~e~-~~~~~~~~~~~~ 73 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLK-M--GEPGIYVALEE-HPVQVRQNMAQF 73 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHH-T--TCCEEEEESSS-CHHHHHHHHHTT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHh-c--CCeEEEEEccC-CHHHHHHHHHHc
Confidence 4556888999999999999764333333222 2 23577776432 234555555443
No 234
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=80.61 E-value=0.91 Score=44.89 Aligned_cols=57 Identities=14% Similarity=0.116 Sum_probs=37.1
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+..+|.+.+--.++.+.+.+.- +..+.+|.. |+.. .++ -.+.+|+.||
T Consensus 176 p~~t~~digGl~~~k~~l~e~v--------------------~~pl~~pe~---f~~~------g~~---~prGvLLyGP 223 (434)
T 4b4t_M 176 PTETYSDVGGLDKQIEELVEAI--------------------VLPMKRADK---FKDM------GIR---APKGALMYGP 223 (434)
T ss_dssp CSCCGGGSCSCHHHHHHHHHHT--------------------HHHHHCSHH---HHHH------CCC---CCCEEEEESC
T ss_pred CCCChHhcCcHHHHHHHHHHHH--------------------HHHHhCHHH---HHhC------CCC---CCCeeEEECc
Confidence 4457888887788888877653 001334422 3544 332 2478999999
Q ss_pred CCChhHHHH
Q psy1548 158 SGMGKTAVF 166 (448)
Q Consensus 158 TGsGKT~~~ 166 (448)
+|+|||+.+
T Consensus 224 PGTGKTllA 232 (434)
T 4b4t_M 224 PGTGKTLLA 232 (434)
T ss_dssp TTSSHHHHH
T ss_pred CCCCHHHHH
Confidence 999999764
No 235
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=80.45 E-value=1.3 Score=43.67 Aligned_cols=27 Identities=33% Similarity=0.395 Sum_probs=19.0
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhh
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLE 175 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~ 175 (448)
.|.-+++.||||||||.. +-.++..+.
T Consensus 166 ~ggii~I~GpnGSGKTTl-L~allg~l~ 192 (418)
T 1p9r_A 166 PHGIILVTGPTGSGKSTT-LYAGLQELN 192 (418)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHHC
T ss_pred cCCeEEEECCCCCCHHHH-HHHHHhhcC
Confidence 356789999999999965 334444443
No 236
>3eme_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics; 2.00A {Staphylococcus aureus subsp} PDB: 3iwh_A 3mzz_A
Probab=80.24 E-value=1.1 Score=34.23 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.6
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
+..++++||.+-.++...+..|++.|+++..+.||+.
T Consensus 55 ~~~~iv~yC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 91 (103)
T 3eme_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCChHHHHHHHHHHHCCCCeEEeCCCHH
Confidence 3468999999998999999999999999999999864
No 237
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=79.76 E-value=1 Score=42.09 Aligned_cols=20 Identities=25% Similarity=0.301 Sum_probs=16.8
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..++.+++.||+|+|||..+
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la 66 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLA 66 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHH
T ss_pred CCCceEEEECCCCcCHHHHH
Confidence 34678999999999999764
No 238
>3iwh_A Rhodanese-like domain protein; alpha-beta-alpha sandwich, structural genomics, C structural genomics of infectious diseases, csgid; 2.00A {Staphylococcus aureus subsp} PDB: 3mzz_A
Probab=79.63 E-value=1.2 Score=34.31 Aligned_cols=37 Identities=19% Similarity=0.231 Sum_probs=32.3
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
+..++++||.+-.++...+..|++.|+++..+.||+.
T Consensus 55 ~~~~ivv~C~~G~rS~~aa~~L~~~G~~~~~l~GG~~ 91 (103)
T 3iwh_A 55 KNEIYYIVCAGGVRSAKVVEYLEANGIDAVNVEGGMH 91 (103)
T ss_dssp TTSEEEEECSSSSHHHHHHHHHHTTTCEEEEETTHHH
T ss_pred CCCeEEEECCCCHHHHHHHHHHHHcCCCEEEecChHH
Confidence 3568999999999999999999999999988888863
No 239
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=79.60 E-value=11 Score=35.43 Aligned_cols=54 Identities=11% Similarity=0.200 Sum_probs=30.3
Q ss_pred eeEEEecchhHHHhhhhhHHHHHHHHHhCCCCCeEEEEeccCCccHHHHHHHhc
Q psy1548 257 LKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFM 310 (448)
Q Consensus 257 i~~lViDEah~l~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~~~~~~~~~~~l 310 (448)
.+++++|.+-...........+..+.+.+.+...++.+.++...+....++.+.
T Consensus 212 ~d~vliDtaG~~~~~~~l~~eL~~i~ral~~de~llvLDa~t~~~~~~~~~~~~ 265 (328)
T 3e70_C 212 IDVVLIDTAGRSETNRNLMDEMKKIARVTKPNLVIFVGDALAGNAIVEQARQFN 265 (328)
T ss_dssp CSEEEEEECCSCCTTTCHHHHHHHHHHHHCCSEEEEEEEGGGTTHHHHHHHHHH
T ss_pred chhhHHhhccchhHHHHHHHHHHHHHHHhcCCCCEEEEecHHHHHHHHHHHHHH
Confidence 345667776543211134444555555555566677777777666666555543
No 240
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=79.16 E-value=1.9 Score=37.18 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=17.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHhh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l 174 (448)
+++++.||+|+|||... -.+...+
T Consensus 55 ~~~~l~G~~GtGKT~la-~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLL-AAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHH-HHHHHHH
T ss_pred CeEEEECCCCCCHHHHH-HHHHHHH
Confidence 78999999999999764 3344443
No 241
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=78.84 E-value=1.6 Score=41.97 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=19.3
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhc
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLET 176 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~ 176 (448)
.|..+++.||||||||.. +-.++..+..
T Consensus 122 ~~g~i~I~GptGSGKTTl-L~~l~g~~~~ 149 (356)
T 3jvv_A 122 PRGLVLVTGPTGSGKSTT-LAAMLDYLNN 149 (356)
T ss_dssp SSEEEEEECSTTSCHHHH-HHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHH-HHHHHhcccC
Confidence 356899999999999955 3334444443
No 242
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=78.29 E-value=14 Score=34.15 Aligned_cols=19 Identities=21% Similarity=0.010 Sum_probs=15.5
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+-+.+.+++|+|||...
T Consensus 97 ~~~~i~i~g~~G~GKTT~~ 115 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTA 115 (295)
T ss_dssp SSEEEEEECCTTTTHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 5677778899999999654
No 243
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=78.28 E-value=0.91 Score=38.33 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.4
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.++++.||+|+|||...
T Consensus 43 ~~~~ll~G~~G~GKT~l~ 60 (195)
T 1jbk_A 43 KNNPVLIGEPGVGKTAIV 60 (195)
T ss_dssp SCEEEEECCTTSCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467999999999999764
No 244
>1wv9_A Rhodanese homolog TT1651; CDC25, phosphatase, sulfurtransferase, structural genomics, NPPSFA; 2.00A {Thermus thermophilus}
Probab=78.20 E-value=1.6 Score=32.74 Aligned_cols=35 Identities=11% Similarity=0.256 Sum_probs=31.7
Q ss_pred CeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 355 NQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 355 ~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
.++++||.+-.++...+..|++.|+++..+.||+.
T Consensus 54 ~~ivvyC~~g~rs~~a~~~L~~~G~~v~~l~GG~~ 88 (94)
T 1wv9_A 54 RPLLLVCEKGLLSQVAALYLEAEGYEAMSLEGGLQ 88 (94)
T ss_dssp SCEEEECSSSHHHHHHHHHHHHHTCCEEEETTGGG
T ss_pred CCEEEEcCCCChHHHHHHHHHHcCCcEEEEcccHH
Confidence 68999999999999999999999999888889875
No 245
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=77.86 E-value=1.8 Score=41.91 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=16.2
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|..+++.||||||||..
T Consensus 134 ~~g~~i~ivG~~GsGKTTl 152 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTT 152 (372)
T ss_dssp SSSEEEEEECSSSSSHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3477899999999999965
No 246
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=77.54 E-value=20 Score=36.30 Aligned_cols=53 Identities=9% Similarity=0.039 Sum_probs=35.0
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEec
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFAS 413 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t 413 (448)
.++.++||++|....+.+++ +.+.++..-..+++. ...++.|+.... +|.|++
T Consensus 392 ~~g~~lvlF~Sy~~l~~v~~---~~~~~v~~q~~~~~~---~~~~~~~~~~~~--~vl~~v 444 (551)
T 3crv_A 392 AKANVLVVFPSYEIMDRVMS---RISLPKYVESEDSSV---EDLYSAISANNK--VLIGSV 444 (551)
T ss_dssp CSSEEEEEESCHHHHHHHHT---TCCSSEEECCSSCCH---HHHHHHTTSSSS--CEEEEE
T ss_pred CCCCEEEEecCHHHHHHHHH---hcCCcEEEcCCCCCH---HHHHHHHHhcCC--eEEEEE
Confidence 35689999999999999987 345555544446664 456777764333 455543
No 247
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=77.02 E-value=2.5 Score=39.56 Aligned_cols=19 Identities=16% Similarity=0.335 Sum_probs=16.3
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
++++++.||+|+|||....
T Consensus 152 ~~~lll~G~~GtGKT~La~ 170 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLA 170 (308)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CceEEEECCCCCCHHHHHH
Confidence 5799999999999997643
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=76.86 E-value=1 Score=38.38 Aligned_cols=19 Identities=11% Similarity=0.319 Sum_probs=16.0
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+-+++.||+|+|||...
T Consensus 4 ~g~~i~i~GpsGsGKSTL~ 22 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIK 22 (180)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999653
No 249
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=76.77 E-value=1.7 Score=43.93 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=16.0
Q ss_pred eCcceeeeccCCChhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~ 165 (448)
.|..+++.||||||||..
T Consensus 259 ~g~~i~I~GptGSGKTTl 276 (511)
T 2oap_1 259 HKFSAIVVGETASGKTTT 276 (511)
T ss_dssp TTCCEEEEESTTSSHHHH
T ss_pred CCCEEEEECCCCCCHHHH
Confidence 478899999999999965
No 250
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=76.58 E-value=3.4 Score=38.78 Aligned_cols=59 Identities=10% Similarity=-0.017 Sum_probs=34.4
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhcc---------CCC----eEEEEeeccHHH-HHHHHHHHHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETT---------DSN----VYVLVMCHTREL-AFQISKEYERF 203 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~---------~~~----~~~lil~Pt~~L-~~q~~~~~~~~ 203 (448)
.+..|.-+++.|++|+|||...+--+.+..... ..+ ..++|+.--..+ ..++.+.++++
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~ 166 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHA 166 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHc
Confidence 344578899999999999966544343322111 112 578888754432 34444455544
No 251
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=76.49 E-value=1.7 Score=45.39 Aligned_cols=42 Identities=17% Similarity=0.193 Sum_probs=39.1
Q ss_pred eeEeeccccCCcccccceeEeeccCCCCchhhhhhhcccccc
Q psy1548 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRF 142 (448)
Q Consensus 101 ~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~ 142 (448)
++++|.+.|.|+|.+....|++|+.|.....+.|.+||++|.
T Consensus 472 ~L~st~a~g~Glnl~~a~~Vi~~d~~wnp~~~~Qa~gR~~R~ 513 (644)
T 1z3i_X 472 FMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRD 513 (644)
T ss_dssp EEEEGGGSCTTCCCTTEEEEEECSCCSSHHHHHHHHTTSSST
T ss_pred EEEecccccCCcccccCCEEEEECCCCCccHHHHHHHhhhhc
Confidence 789999999999999999999999999988889999998883
No 252
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=75.84 E-value=0.89 Score=38.33 Aligned_cols=18 Identities=28% Similarity=0.436 Sum_probs=15.4
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.++++.||+|+|||...
T Consensus 43 ~~~vll~G~~G~GKT~la 60 (187)
T 2p65_A 43 KNNPILLGDPGVGKTAIV 60 (187)
T ss_dssp SCEEEEESCGGGCHHHHH
T ss_pred CCceEEECCCCCCHHHHH
Confidence 467899999999999654
No 253
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=75.42 E-value=1.5 Score=41.30 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 51 ~~~vLl~GppGtGKT~la 68 (322)
T 3eie_A 51 TSGILLYGPPGTGKSYLA 68 (322)
T ss_dssp CCEEEEECSSSSCHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 468999999999999764
No 254
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=74.97 E-value=1.1 Score=38.06 Aligned_cols=22 Identities=32% Similarity=0.338 Sum_probs=17.7
Q ss_pred eeeCcceeeeccCCChhHHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~ 167 (448)
+..++.+++.|++|+|||...-
T Consensus 8 ~~~~~~i~i~G~~GsGKst~~~ 29 (180)
T 3iij_A 8 FMLLPNILLTGTPGVGKTTLGK 29 (180)
T ss_dssp TCCCCCEEEECSTTSSHHHHHH
T ss_pred cccCCeEEEEeCCCCCHHHHHH
Confidence 3456789999999999997643
No 255
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=74.83 E-value=2.9 Score=37.18 Aligned_cols=56 Identities=20% Similarity=0.167 Sum_probs=31.2
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
-+..|.-+++.|++|+|||...+--+.+..... +..++|++-. +-..++.+.+..+
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~--~~~v~~~s~E-~~~~~~~~~~~~~ 81 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEY--GEPGVFVTLE-ERARDLRREMASF 81 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHH--CCCEEEEESS-SCHHHHHHHHHTT
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhc--CCCceeeccc-CCHHHHHHHHHHc
Confidence 345577899999999999965433333322222 2246666532 2234444444443
No 256
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=74.50 E-value=1.5 Score=41.75 Aligned_cols=18 Identities=17% Similarity=0.246 Sum_probs=15.0
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++-++|.||||+|||...
T Consensus 40 ~~lIvI~GPTgsGKTtLa 57 (339)
T 3a8t_A 40 EKLLVLMGATGTGKSRLS 57 (339)
T ss_dssp CEEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 356899999999999764
No 257
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=74.39 E-value=1.3 Score=38.34 Aligned_cols=20 Identities=25% Similarity=0.190 Sum_probs=16.6
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..|+.+++.|++|+|||...
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~ 42 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLG 42 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEcCCCCCHHHHH
Confidence 34778999999999999764
No 258
>3g5j_A Putative ATP/GTP binding protein; N-terminal domain of ATP/GTP binding protein, PSI, MCSG, STR genomics, protein structure initiative; HET: PGE; 1.76A {Clostridium difficile}
Probab=73.78 E-value=4 Score=32.42 Aligned_cols=37 Identities=19% Similarity=0.315 Sum_probs=32.6
Q ss_pred CeEEEEE-CccHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy1548 355 NQVVIFV-KSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391 (448)
Q Consensus 355 ~~~IIF~-~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~ 391 (448)
.++|+|| .+-.++..++..|+..|+++..+.||+..-
T Consensus 90 ~~ivvyC~~~G~rs~~a~~~L~~~G~~v~~l~GG~~~W 127 (134)
T 3g5j_A 90 DNIVIYCARGGMRSGSIVNLLSSLGVNVYQLEGGYKAY 127 (134)
T ss_dssp SEEEEECSSSSHHHHHHHHHHHHTTCCCEEETTHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHcCCceEEEeCcHHHH
Confidence 6899999 577889999999999999999999997654
No 259
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=73.69 E-value=1.4 Score=37.38 Aligned_cols=19 Identities=32% Similarity=0.200 Sum_probs=15.9
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
++.+++.|++|||||...-
T Consensus 5 ~~~i~l~G~~GsGKst~a~ 23 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGS 23 (185)
T ss_dssp CCEEEEECSTTSSHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHH
Confidence 5678999999999997643
No 260
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=73.57 E-value=4.2 Score=41.37 Aligned_cols=64 Identities=16% Similarity=0.117 Sum_probs=43.7
Q ss_pred HHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 345 LFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 345 L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+..++.. .++++|||++|...++.+++.|+. .+ ...++.. .+|.++++.|+++. ++.+.+++..
T Consensus 376 l~~~~~~-~~g~~lvff~S~~~~~~v~~~l~~--~~-~~~q~~~--~~~~~~l~~f~~~~-~il~~V~~~~ 439 (540)
T 2vl7_A 376 LKRIYEN-SSKSVLVFFPSYEMLESVRIHLSG--IP-VIEENKK--TRHEEVLELMKTGK-YLVMLVMRAK 439 (540)
T ss_dssp HHHHHHT-CSSEEEEEESCHHHHHHHHTTCTT--SC-EEESTTT--CCHHHHHHHHHTSC-CEEEEEC---
T ss_pred HHHHHHh-CCCCEEEEeCCHHHHHHHHHHhcc--Cc-eEecCCC--CcHHHHHHHHhcCC-eEEEEEecCc
Confidence 3444443 457899999999999999998875 33 4566664 46889999999853 4444445554
No 261
>1w36_B RECB, exodeoxyribonuclease V beta chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 c.52.1.24 PDB: 3k70_B*
Probab=73.54 E-value=4.5 Score=45.41 Aligned_cols=55 Identities=22% Similarity=0.155 Sum_probs=41.2
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhcc---------CCCeEEEEeeccHHHHHHHHHHHHHh
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETT---------DSNVYVLVMCHTRELAFQISKEYERF 203 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~---------~~~~~~lil~Pt~~L~~q~~~~~~~~ 203 (448)
.|. .+|.|..|||||.+..--++..+... -...++|+|+=|++=+.++.+.+...
T Consensus 16 ~g~-~lV~AsAGSGKT~~L~~r~lrLll~~g~~~~~~~~~~~~~ILvvTFT~aAA~EMr~RI~~~ 79 (1180)
T 1w36_B 16 QGE-RLIEASAGTGKTFTIAALYLRLLLGLGGSAAFPRPLTVEELLVVTFTEAATAELRGRIRSN 79 (1180)
T ss_dssp SSC-EEEECCTTSCHHHHHHHHHHHHHTTCSSSSSCSSCCCGGGEEEEESCHHHHHHHHHHHHHH
T ss_pred CCC-EEEEECCCCCHHHHHHHHHHHHHhcCCcccccCCCCCHHHEEEEeccHHHHHHHHHHHHHH
Confidence 344 49999999999988766666666431 12347999999999888888777654
No 262
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=73.39 E-value=1.8 Score=37.95 Aligned_cols=18 Identities=33% Similarity=0.708 Sum_probs=15.6
Q ss_pred eCcceeeeccCCChhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~ 165 (448)
.|+-+++.+|||+|||..
T Consensus 33 ~g~~ilI~GpsGsGKStL 50 (205)
T 2qmh_A 33 YGLGVLITGDSGVGKSET 50 (205)
T ss_dssp TTEEEEEECCCTTTTHHH
T ss_pred CCEEEEEECCCCCCHHHH
Confidence 467899999999999955
No 263
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=73.29 E-value=1.7 Score=39.70 Aligned_cols=20 Identities=25% Similarity=0.179 Sum_probs=17.0
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||||||||..
T Consensus 22 i~~g~~v~i~Gp~GsGKSTl 41 (261)
T 2eyu_A 22 HRKMGLILVTGPTGSGKSTT 41 (261)
T ss_dssp GCSSEEEEEECSTTCSHHHH
T ss_pred hCCCCEEEEECCCCccHHHH
Confidence 45678899999999999965
No 264
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=73.19 E-value=2.6 Score=40.49 Aligned_cols=19 Identities=32% Similarity=0.454 Sum_probs=16.6
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|..+++.||||+|||..
T Consensus 173 ~~G~~i~ivG~sGsGKSTl 191 (361)
T 2gza_A 173 QLERVIVVAGETGSGKTTL 191 (361)
T ss_dssp HTTCCEEEEESSSSCHHHH
T ss_pred hcCCEEEEECCCCCCHHHH
Confidence 3588999999999999965
No 265
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=73.05 E-value=1.4 Score=40.69 Aligned_cols=18 Identities=28% Similarity=0.320 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++.+++.||+|+|||..+
T Consensus 54 ~~~vll~Gp~GtGKT~la 71 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLA 71 (297)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 578999999999999764
No 266
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=73.04 E-value=1.5 Score=36.96 Aligned_cols=18 Identities=22% Similarity=0.307 Sum_probs=15.2
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++-+++.|++|+|||.+.
T Consensus 3 ~~~i~l~G~~GsGKST~a 20 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIV 20 (178)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 267
>3hix_A ALR3790 protein; rhodanese, rhodanese_3, Q8YQN0, Q8YQN0_anAsp, NSR437I, NESG, structural genomics, PSI-2, protein structure initiative; 1.92A {Anabaena SP} PDB: 3k9r_A
Probab=72.86 E-value=2.3 Score=32.70 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=32.4
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~ 390 (448)
...++|+||.+-.++...+..|+..|+. +..+.||+..
T Consensus 51 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~ 89 (106)
T 3hix_A 51 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 89 (106)
T ss_dssp TTSCEEEECSSHHHHHHHHHHHHHTTCSCEEECTTHHHH
T ss_pred CCCeEEEEECCCChHHHHHHHHHHcCCcCEEEecCCHHH
Confidence 3457999999999999999999999995 8888898654
No 268
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=72.56 E-value=1.5 Score=38.13 Aligned_cols=22 Identities=18% Similarity=0.226 Sum_probs=17.6
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|+-+++.||+|+|||...
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~ 29 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLI 29 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHH
Confidence 3456788999999999999653
No 269
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=72.40 E-value=2.7 Score=47.18 Aligned_cols=39 Identities=15% Similarity=0.258 Sum_probs=29.8
Q ss_pred eeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHH
Q psy1548 153 LCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191 (448)
Q Consensus 153 li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~ 191 (448)
+|.|+.|||||.+.+--+...+.....+.++|+++|...
T Consensus 5 lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~ 43 (1166)
T 3u4q_B 5 FLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM 43 (1166)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG
T ss_pred EEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc
Confidence 688999999998876666665555555568999998774
No 270
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=72.34 E-value=2.9 Score=40.49 Aligned_cols=42 Identities=21% Similarity=0.251 Sum_probs=28.5
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L 192 (448)
.+.++++.||||+|||...-.-+.+.. . .+.+++++=|..+.
T Consensus 34 ~~~~~~i~G~~G~GKs~~~~~~~~~~~-~--~~~~~~~~D~~~~~ 75 (392)
T 4ag6_A 34 TNSNWTILAKPGAGKSFTAKMLLLREY-M--QGSRVIIIDPEREY 75 (392)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHH-T--TTCCEEEEESSCCS
T ss_pred ccCceEEEcCCCCCHHHHHHHHHHHHH-H--CCCEEEEEeCCcCH
Confidence 467899999999999976544333332 2 34567888787653
No 271
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=72.34 E-value=1.5 Score=42.00 Aligned_cols=19 Identities=32% Similarity=0.302 Sum_probs=16.5
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.++++.||+|+|||..+
T Consensus 50 ~~~~vll~GppGtGKT~la 68 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLA 68 (363)
T ss_dssp CCCCEEEECCTTSSHHHHH
T ss_pred CCCeEEEECCCCCCHHHHH
Confidence 4578999999999999764
No 272
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=72.28 E-value=1.5 Score=41.25 Aligned_cols=17 Identities=18% Similarity=0.130 Sum_probs=14.0
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+-++|.||||+|||...
T Consensus 4 ~~i~i~GptgsGKt~la 20 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTS 20 (322)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCcCCHHHHH
Confidence 44788999999999664
No 273
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=72.24 E-value=5 Score=37.71 Aligned_cols=59 Identities=8% Similarity=-0.085 Sum_probs=33.7
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhc---cCCCeEEEEeeccHHH-HHHHHHHHHHh
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLET---TDSNVYVLVMCHTREL-AFQISKEYERF 203 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~---~~~~~~~lil~Pt~~L-~~q~~~~~~~~ 203 (448)
.+..|.-+++.||+|+|||...+--+.+.... ...+..++|+.-...+ ..++...+..+
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~ 165 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKAL 165 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHh
Confidence 34557889999999999996654433332221 1113478887754322 33444444443
No 274
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=72.11 E-value=1.5 Score=41.85 Aligned_cols=18 Identities=39% Similarity=0.636 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++.+++.||+|+|||..+
T Consensus 70 ~~~vLl~GppGtGKT~la 87 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIA 87 (368)
T ss_dssp TCEEEEEESTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 578999999999999764
No 275
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=71.91 E-value=1.6 Score=39.34 Aligned_cols=18 Identities=28% Similarity=0.257 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||...
T Consensus 39 ~~~vll~G~~GtGKT~la 56 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLA 56 (262)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 467999999999999764
No 276
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=71.91 E-value=6.4 Score=46.27 Aligned_cols=49 Identities=10% Similarity=-0.017 Sum_probs=32.1
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~ 197 (448)
.+..|+++++.+|+|+|||.....-+...... +.+++++. ..++..++.
T Consensus 1077 gi~~g~~vll~G~~GtGKT~la~~~~~ea~k~---Ge~~~Fit-~ee~~~~L~ 1125 (2050)
T 3cmu_A 1077 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQRE---GKTCAFID-AEHALDPIY 1125 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTT---TCCEEEEC-TTSCCCHHH
T ss_pred CcCCCcEEEEECCCCCCHHHHHHHHHHHHHHc---CCeEEEEE-ccccHHHHH
Confidence 45678999999999999997655444444432 44677775 333444444
No 277
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=71.70 E-value=1.7 Score=39.54 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.2
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.++++.||+|+|||..+
T Consensus 28 ~~~~vll~G~~GtGKt~la 46 (265)
T 2bjv_A 28 LDKPVLIIGERGTGKELIA 46 (265)
T ss_dssp SCSCEEEECCTTSCHHHHH
T ss_pred CCCCEEEECCCCCcHHHHH
Confidence 3578999999999999654
No 278
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=71.57 E-value=1.7 Score=40.29 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.7
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.++++.||+|+|||...
T Consensus 50 ~~~vll~G~~GtGKT~la 67 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIA 67 (310)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999764
No 279
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=71.54 E-value=2 Score=42.53 Aligned_cols=18 Identities=28% Similarity=0.333 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+-+|+.||+|+|||+.+
T Consensus 215 prGvLL~GPPGtGKTllA 232 (437)
T 4b4t_L 215 PKGVLLYGPPGTGKTLLA 232 (437)
T ss_dssp CCEEEEESCTTSSHHHHH
T ss_pred CCeEEEECCCCCcHHHHH
Confidence 478999999999999764
No 280
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=71.39 E-value=2.2 Score=37.06 Aligned_cols=19 Identities=21% Similarity=0.333 Sum_probs=15.0
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+-+.+.||+|+|||...
T Consensus 3 ~g~~i~lvGpsGaGKSTLl 21 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLL 21 (198)
T ss_dssp --CCEEEECCTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4677899999999999754
No 281
>2fsx_A RV0390, COG0607: rhodanese-related sulfurtransferase; RV0390 BR SAD DATA with FBAR, structural genomics, PSI; 1.80A {Mycobacterium tuberculosis}
Probab=71.36 E-value=3.8 Score=33.58 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=31.5
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCCC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNF-PAVSIHRGMT 389 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~ 389 (448)
...++|+||.+-.++...+..|++.|+ ++..+.||+.
T Consensus 79 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~ 116 (148)
T 2fsx_A 79 HERPVIFLCRSGNRSIGAAEVATEAGITPAYNVLDGFE 116 (148)
T ss_dssp --CCEEEECSSSSTHHHHHHHHHHTTCCSEEEETTTTT
T ss_pred CCCEEEEEcCCChhHHHHHHHHHHcCCcceEEEcCChh
Confidence 356899999998889999999999999 5999999984
No 282
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=71.29 E-value=4.3 Score=40.97 Aligned_cols=42 Identities=14% Similarity=0.136 Sum_probs=24.7
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeecc
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHT 189 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt 189 (448)
.+.+++|.|+||||||.+.-.-++..+.. .+...+.+++=|.
T Consensus 166 ~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK 208 (512)
T 2ius_A 166 KMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPK 208 (512)
T ss_dssp GSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCS
T ss_pred cCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCc
Confidence 36799999999999997643333332322 2334444444343
No 283
>2jtq_A Phage shock protein E; solution structure rhodanese, stress response, transferase; NMR {Escherichia coli} PDB: 2jtr_A 2jts_A
Probab=71.22 E-value=9.2 Score=27.67 Aligned_cols=36 Identities=14% Similarity=0.264 Sum_probs=30.1
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMT 389 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~ 389 (448)
+..++++||.+-.++...+..|++.|++ +..+ ||+.
T Consensus 40 ~~~~ivv~C~~g~rs~~aa~~L~~~G~~~v~~l-GG~~ 76 (85)
T 2jtq_A 40 KNDTVKVYCNAGRQSGQAKEILSEMGYTHVENA-GGLK 76 (85)
T ss_dssp TTSEEEEEESSSHHHHHHHHHHHHTTCSSEEEE-EETT
T ss_pred CCCcEEEEcCCCchHHHHHHHHHHcCCCCEEec-cCHH
Confidence 4568999999999999999999999985 5555 7764
No 284
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=71.09 E-value=2.1 Score=37.29 Aligned_cols=21 Identities=14% Similarity=0.175 Sum_probs=17.5
Q ss_pred eeeCcceeeeccCCChhHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~ 166 (448)
...|+-+++.||+|+|||...
T Consensus 16 ~~~g~~ivl~GPSGaGKsTL~ 36 (197)
T 3ney_A 16 FQGRKTLVLIGASGVGRSHIK 36 (197)
T ss_dssp CCSCCEEEEECCTTSSHHHHH
T ss_pred CCCCCEEEEECcCCCCHHHHH
Confidence 356888999999999999753
No 285
>3nhv_A BH2092 protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 2.50A {Bacillus halodurans} PDB: 3o3w_A
Probab=71.03 E-value=3 Score=34.20 Aligned_cols=37 Identities=5% Similarity=0.127 Sum_probs=32.1
Q ss_pred CCeEEEEECcc--HHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 354 FNQVVIFVKSV--TRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 354 ~~~~IIF~~s~--~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
..++|+||.+- .++..++..|+..|+++..+.||+..
T Consensus 72 ~~~ivvyC~~g~~~rs~~aa~~L~~~G~~v~~l~GG~~~ 110 (144)
T 3nhv_A 72 EKVIITYCWGPACNGATKAAAKFAQLGFRVKELIGGIEY 110 (144)
T ss_dssp TSEEEEECSCTTCCHHHHHHHHHHHTTCEEEEEESHHHH
T ss_pred CCeEEEEECCCCccHHHHHHHHHHHCCCeEEEeCCcHHH
Confidence 45799999987 58999999999999999999999654
No 286
>2k0z_A Uncharacterized protein HP1203; A/B domain, structural genomics, unknown function, PSI-2, PR structure initiative; NMR {Helicobacter pylori}
Probab=70.98 E-value=5 Score=30.95 Aligned_cols=38 Identities=8% Similarity=0.208 Sum_probs=32.7
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
...++++||.+-.++...+..|++.|+....+.||+..
T Consensus 55 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~~~l~GG~~~ 92 (110)
T 2k0z_A 55 KDKKVLLHCRAGRRALDAAKSMHELGYTPYYLEGNVYD 92 (110)
T ss_dssp SSSCEEEECSSSHHHHHHHHHHHHTTCCCEEEESCGGG
T ss_pred CCCEEEEEeCCCchHHHHHHHHHHCCCCEEEecCCHHH
Confidence 45689999999999999999999999866888899753
No 287
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=70.94 E-value=1.7 Score=40.82 Aligned_cols=16 Identities=31% Similarity=0.374 Sum_probs=13.5
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-++|.||||+|||..+
T Consensus 12 ~i~i~GptgsGKt~la 27 (316)
T 3foz_A 12 AIFLMGPTASGKTALA 27 (316)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999664
No 288
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=70.83 E-value=1.5 Score=37.46 Aligned_cols=20 Identities=25% Similarity=0.416 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+++.||+|+|||..
T Consensus 6 i~~g~~i~l~G~~GsGKSTl 25 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTI 25 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHH
T ss_pred CCCCeEEEEECCCCCCHHHH
Confidence 34577899999999999975
No 289
>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=70.80 E-value=33 Score=26.22 Aligned_cols=82 Identities=16% Similarity=0.254 Sum_probs=56.5
Q ss_pred HHHHHHHhhCCCCeEEEEECc--cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecChhhHHH
Q psy1548 343 KKLFELLDVLEFNQVVIFVKS--VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI 420 (448)
Q Consensus 343 ~~L~~ll~~~~~~~~IIF~~s--~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~~d~~~ 420 (448)
.-+.+++...+.-.+++.+.| ++-....-+.-++.|..+...+..-..+.|.++.++|++ .|+.+--+++. .++
T Consensus 66 enireiwerypqldvvvivttddkewikdfieeakergvevfvvynnkdddrrkeaqqefrs--dgvdvrtvsdk--eel 141 (162)
T 2l82_A 66 ENIREIWERYPQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDDRRKEAQQEFRS--DGVDVRTVSDK--EEL 141 (162)
T ss_dssp HHHHHHHHHCTTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHHHHHHHHHHHCC--SSCEEEEESSH--HHH
T ss_pred HHHHHHHHhCCCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCchhHHHHHHHhhh--cCceeeecCCH--HHH
Confidence 345666666554444444433 333444444556789999999999999999999999988 77899888876 455
Q ss_pred HHHHHHHh
Q psy1548 421 LNNVQDRF 428 (448)
Q Consensus 421 l~~i~~~~ 428 (448)
+..+.++.
T Consensus 142 ieqvrrfv 149 (162)
T 2l82_A 142 IEQVRRFV 149 (162)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 55655543
No 290
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.56 E-value=2.3 Score=37.11 Aligned_cols=19 Identities=37% Similarity=0.483 Sum_probs=15.8
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+-+++.||+|+|||...
T Consensus 7 ~g~~i~l~GpsGsGKsTl~ 25 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVR 25 (208)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677899999999999753
No 291
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=70.38 E-value=1.8 Score=37.34 Aligned_cols=20 Identities=35% Similarity=0.429 Sum_probs=16.5
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..|.-+.+.||+|||||...
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~ 23 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVR 23 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 34778899999999999754
No 292
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=70.10 E-value=2.6 Score=36.70 Aligned_cols=37 Identities=19% Similarity=0.033 Sum_probs=24.3
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+..|.-+++.+|+|+|||.....-+. . .+..++++.
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~---~---~~~~v~~i~ 52 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGL---L---SGKKVAYVD 52 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHH---H---HCSEEEEEE
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH---H---cCCcEEEEE
Confidence 344577889999999999965443332 1 123566665
No 293
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=70.03 E-value=2.1 Score=42.57 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+|+.||.|+|||+.+
T Consensus 243 prGILLyGPPGTGKTlLA 260 (467)
T 4b4t_H 243 PKGILLYGPPGTGKTLCA 260 (467)
T ss_dssp CSEEEECSCTTSSHHHHH
T ss_pred CCceEeeCCCCCcHHHHH
Confidence 578999999999999764
No 294
>3flh_A Uncharacterized protein LP_1913; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.00A {Lactobacillus plantarum} PDB: 3fnj_A 3i3u_A
Probab=70.01 E-value=2 Score=34.19 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=34.5
Q ss_pred HHHhhC-CCCeEEEEECccHH--HHHHHHHHHhCCCcEEEEeCCCCH
Q psy1548 347 ELLDVL-EFNQVVIFVKSVTR--CIALSTLLSEQNFPAVSIHRGMTQ 390 (448)
Q Consensus 347 ~ll~~~-~~~~~IIF~~s~~~--a~~l~~~L~~~g~~~~~lh~~~~~ 390 (448)
..+... ...++|+||.+-.+ +..++..|++.|+++..+.||+..
T Consensus 63 ~~~~~l~~~~~ivvyC~~g~r~~s~~a~~~L~~~G~~v~~l~GG~~~ 109 (124)
T 3flh_A 63 TRIGELDPAKTYVVYDWTGGTTLGKTALLVLLSAGFEAYELAGALEG 109 (124)
T ss_dssp HHGGGSCTTSEEEEECSSSSCSHHHHHHHHHHHHTCEEEEETTHHHH
T ss_pred HHHhcCCCCCeEEEEeCCCCchHHHHHHHHHHHcCCeEEEeCCcHHH
Confidence 334334 35579999999877 889999999999998888898654
No 295
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=69.89 E-value=2.2 Score=35.97 Aligned_cols=22 Identities=18% Similarity=0.037 Sum_probs=17.6
Q ss_pred eeeCcceeeeccCCChhHHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~ 167 (448)
+..|.-+.+.||+|||||..+-
T Consensus 6 i~~gei~~l~G~nGsGKSTl~~ 27 (171)
T 4gp7_A 6 IPELSLVVLIGSSGSGKSTFAK 27 (171)
T ss_dssp EESSEEEEEECCTTSCHHHHHH
T ss_pred CCCCEEEEEECCCCCCHHHHHH
Confidence 3457788999999999997643
No 296
>1qxn_A SUD, sulfide dehydrogenase; polysulfide-sulfur transferase, homodimer; NMR {Wolinella succinogenes} SCOP: c.46.1.3
Probab=69.81 E-value=2.9 Score=33.92 Aligned_cols=38 Identities=26% Similarity=0.369 Sum_probs=33.1
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNF-PAVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~~ 390 (448)
...++|+||.+-.++...+..|++.|+ ++..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rS~~aa~~L~~~G~~~v~~l~GG~~~ 119 (137)
T 1qxn_A 81 PEKPVVVFCKTAARAALAGKTLREYGFKTIYNSEGGMDK 119 (137)
T ss_dssp TTSCEEEECCSSSCHHHHHHHHHHHTCSCEEEESSCHHH
T ss_pred CCCeEEEEcCCCcHHHHHHHHHHHcCCcceEEEcCcHHH
Confidence 456899999999899999999999999 58899999754
No 297
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=69.63 E-value=2.9 Score=39.57 Aligned_cols=19 Identities=26% Similarity=0.557 Sum_probs=16.5
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|+.+.+.||||||||..
T Consensus 169 ~~g~~v~i~G~~GsGKTTl 187 (330)
T 2pt7_A 169 AIGKNVIVCGGTGSGKTTY 187 (330)
T ss_dssp HHTCCEEEEESTTSCHHHH
T ss_pred cCCCEEEEECCCCCCHHHH
Confidence 3588999999999999964
No 298
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=69.49 E-value=2 Score=37.10 Aligned_cols=16 Identities=31% Similarity=0.507 Sum_probs=13.8
Q ss_pred cceeeeccCCChhHHH
Q psy1548 150 MDILCQAKSGMGKTAV 165 (448)
Q Consensus 150 ~~vli~apTGsGKT~~ 165 (448)
+-++++||+|+|||..
T Consensus 2 RpIVi~GPSG~GK~Tl 17 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTL 17 (186)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CEEEEECCCCCCHHHH
Confidence 4589999999999964
No 299
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=69.48 E-value=2.1 Score=35.83 Aligned_cols=18 Identities=22% Similarity=0.309 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++.+.+.||.|||||...
T Consensus 4 ~~~i~l~G~~GsGKSTl~ 21 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIG 21 (173)
T ss_dssp CCCEEEECCTTSCHHHHH
T ss_pred CCeEEEECCCCCCHHHHH
Confidence 567899999999999754
No 300
>1tq1_A AT5G66040, senescence-associated family protein; CESG, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana} SCOP: c.46.1.3
Probab=69.40 E-value=3.3 Score=33.13 Aligned_cols=38 Identities=21% Similarity=0.261 Sum_probs=32.9
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~ 390 (448)
...++|+||.+-.++...+..|++.|+. +..+.||+..
T Consensus 81 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 119 (129)
T 1tq1_A 81 QSDNIIVGCQSGGRSIKATTDLLHAGFTGVKDIVGGYSA 119 (129)
T ss_dssp TTSSEEEEESSCSHHHHHHHHHHHHHCCSEEEEECCHHH
T ss_pred CCCeEEEECCCCcHHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3568999999988999999999999985 8899999754
No 301
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=69.30 E-value=1.7 Score=39.51 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 44 ~~~vll~G~~GtGKT~la 61 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLA 61 (268)
T ss_dssp CSCCCCBCSSCSSHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 456999999999999764
No 302
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=69.22 E-value=1.9 Score=38.91 Aligned_cols=18 Identities=28% Similarity=0.348 Sum_probs=15.1
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||...
T Consensus 45 ~~~vll~G~~GtGKT~la 62 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLA 62 (257)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CCeEEEECcCCCCHHHHH
Confidence 356999999999999664
No 303
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=69.15 E-value=2.1 Score=36.56 Aligned_cols=19 Identities=37% Similarity=0.629 Sum_probs=16.3
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.|++|||||.+.
T Consensus 9 ~~~~I~l~G~~GsGKSTv~ 27 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMA 27 (184)
T ss_dssp SSCEEEEECSTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 4678999999999999764
No 304
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=68.82 E-value=2 Score=35.71 Aligned_cols=16 Identities=31% Similarity=0.372 Sum_probs=13.5
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.|++|||||...
T Consensus 3 ~I~l~G~~GsGKsT~a 18 (179)
T 3lw7_A 3 VILITGMPGSGKSEFA 18 (179)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 305
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=68.64 E-value=2 Score=40.47 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 45 ~~~iLL~GppGtGKT~la 62 (322)
T 1xwi_A 45 WRGILLFGPPGTGKSYLA 62 (322)
T ss_dssp CSEEEEESSSSSCHHHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 478999999999999764
No 306
>1gmx_A GLPE protein; transferase, rhodanese, sulfurtransferase, glycerol metabolism; 1.1A {Escherichia coli} SCOP: c.46.1.3 PDB: 1gn0_A
Probab=68.47 E-value=2.8 Score=32.25 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=33.1
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCHH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQE 391 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~~ 391 (448)
...++++||.+-.++...+..|++.|+. +..+.||+..-
T Consensus 57 ~~~~ivvyc~~g~rs~~a~~~L~~~G~~~v~~l~GG~~~W 96 (108)
T 1gmx_A 57 FDTPVMVMCYHGNSSKGAAQYLLQQGYDVVYSIDGGFEAW 96 (108)
T ss_dssp TTSCEEEECSSSSHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred CCCCEEEEcCCCchHHHHHHHHHHcCCceEEEecCCHHHH
Confidence 3568999999988999999999999994 88899997653
No 307
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=68.31 E-value=2.8 Score=41.17 Aligned_cols=57 Identities=16% Similarity=0.130 Sum_probs=35.0
Q ss_pred ccCCcccCCCCHHHHHHHhhccceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccceeeeeCcceeeecc
Q psy1548 78 HSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK 157 (448)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~~~~~g~~vli~ap 157 (448)
+..+|.+.+=-.++.+.+.+.- ...+.+|. .|+.. .++ -.+-+|+.||
T Consensus 177 p~v~~~DIgGld~~k~~L~e~v--------------------~~Pl~~pe---~f~~~------Gi~---~prGvLLyGP 224 (437)
T 4b4t_I 177 PTESYSDIGGLESQIQEIKESV--------------------ELPLTHPE---LYEEM------GIK---PPKGVILYGA 224 (437)
T ss_dssp CCCCGGGTCSCHHHHHHHHHHH--------------------HHHHHCCH---HHHHH------TCC---CCSEEEEESS
T ss_pred CCCcceecCcHHHHHHHHHHHH--------------------HHHHhCHH---HHHhC------CCC---CCCCCceECC
Confidence 3457888775566777776653 00033442 22444 222 2478999999
Q ss_pred CCChhHHHH
Q psy1548 158 SGMGKTAVF 166 (448)
Q Consensus 158 TGsGKT~~~ 166 (448)
.|+|||+.+
T Consensus 225 PGTGKTlLA 233 (437)
T 4b4t_I 225 PGTGKTLLA 233 (437)
T ss_dssp TTTTHHHHH
T ss_pred CCchHHHHH
Confidence 999999764
No 308
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=68.08 E-value=4.9 Score=37.68 Aligned_cols=54 Identities=17% Similarity=-0.025 Sum_probs=31.5
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
.+..|.-+++.|++|+|||...+--+.+.... +..+++++.- .-..|+...+..
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~---g~~vl~~slE-~s~~~l~~R~~~ 117 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHSLE-MGKKENIKRLIV 117 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTT---TCEEEEEESS-SCHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHc---CCeEEEEECC-CCHHHHHHHHHH
Confidence 45557789999999999996544333333322 2467777633 223344444433
No 309
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=67.83 E-value=38 Score=33.13 Aligned_cols=44 Identities=18% Similarity=0.040 Sum_probs=25.1
Q ss_pred eCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAF 194 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~ 194 (448)
.++-+.+.+++|+|||.....-+. .+... +.+++++. +.+..+.
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~-~l~~~--g~~Vllvd~D~~r~aa~ 142 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLAL-YYKGK--GRRPLLVAADTQRPAAR 142 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHH-HHHTT--TCCEEEEECCSSCHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHH-HHHHc--CCeEEEeeccccCchhH
Confidence 456677889999999976433222 22222 33555554 4444443
No 310
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=67.79 E-value=6.2 Score=33.50 Aligned_cols=23 Identities=30% Similarity=0.332 Sum_probs=15.6
Q ss_pred ceeeeccCCChhHHHHHHHHHHhh
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQL 174 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l 174 (448)
-+.+.|++|+|||.. +-.++..+
T Consensus 8 ~i~i~G~sGsGKTTl-~~~l~~~l 30 (174)
T 1np6_A 8 LLAFAAWSGTGKTTL-LKKLIPAL 30 (174)
T ss_dssp EEEEECCTTSCHHHH-HHHHHHHH
T ss_pred EEEEEeCCCCCHHHH-HHHHHHhc
Confidence 467899999999954 33344443
No 311
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=67.55 E-value=2.1 Score=38.80 Aligned_cols=16 Identities=25% Similarity=0.092 Sum_probs=13.4
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.||+|||||..+
T Consensus 3 li~I~G~~GSGKSTla 18 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMA 18 (253)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4689999999999654
No 312
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=67.37 E-value=2.4 Score=36.00 Aligned_cols=18 Identities=17% Similarity=0.268 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
|.-+++.|+.|||||...
T Consensus 3 ~~~I~i~G~~GsGKsT~~ 20 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSS 20 (192)
T ss_dssp CCEEEEECCTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 567899999999999754
No 313
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=67.22 E-value=5.3 Score=37.93 Aligned_cols=45 Identities=7% Similarity=-0.152 Sum_probs=28.0
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhcc---CCCeEEEEeeccH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCHTR 190 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~Pt~ 190 (448)
+..|.-+++.||+|+|||...+-.+....... ..+..++|+....
T Consensus 119 l~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 119 IESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34567889999999999966544333322221 1234788887544
No 314
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=67.16 E-value=2.4 Score=36.56 Aligned_cols=19 Identities=32% Similarity=0.358 Sum_probs=15.9
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|+|||...
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~ 24 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLV 24 (205)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECcCCCCHHHHH
Confidence 4677889999999999753
No 315
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=67.16 E-value=2.7 Score=36.96 Aligned_cols=23 Identities=9% Similarity=0.059 Sum_probs=16.9
Q ss_pred cceeeeccCCChhHHHHHHHHHHh
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQ 173 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~ 173 (448)
+.+++.||.|+|||..+ ..++..
T Consensus 59 n~ili~GPPGtGKTt~a-~ala~~ 81 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFG-MSFIHF 81 (212)
T ss_dssp SEEEEESCGGGCHHHHH-HHHHHH
T ss_pred cEEEEECCCCCCHHHHH-HHHHHH
Confidence 46999999999999653 444443
No 316
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=66.88 E-value=2.4 Score=39.65 Aligned_cols=19 Identities=32% Similarity=0.410 Sum_probs=16.3
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.++++.||+|+|||..+
T Consensus 24 ~~~~vLi~Ge~GtGKt~lA 42 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVA 42 (304)
T ss_dssp TTSCEEEESCTTSCHHHHH
T ss_pred CCCcEEEECCCCchHHHHH
Confidence 4678999999999999764
No 317
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=66.50 E-value=2.6 Score=36.00 Aligned_cols=17 Identities=29% Similarity=0.516 Sum_probs=13.8
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+-+.+.||+|+|||...
T Consensus 2 ~ii~l~GpsGaGKsTl~ 18 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLL 18 (186)
T ss_dssp CCEEEESSSSSSHHHHH
T ss_pred CEEEEECCCCCCHHHHH
Confidence 44678999999999753
No 318
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=66.33 E-value=4.2 Score=35.44 Aligned_cols=18 Identities=33% Similarity=0.307 Sum_probs=14.3
Q ss_pred ceeeeccCCChhHHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l 168 (448)
-.++.|+.|||||.....
T Consensus 7 i~l~tG~pGsGKT~~a~~ 24 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVS 24 (199)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHH
Confidence 357999999999986533
No 319
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=66.26 E-value=2.3 Score=39.41 Aligned_cols=18 Identities=17% Similarity=0.073 Sum_probs=15.0
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 36 p~~lLl~GppGtGKT~la 53 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQC 53 (293)
T ss_dssp CSEEEEEECTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999764
No 320
>2hhg_A Hypothetical protein RPA3614; MCSG, structural genomics, rohopseudom palustris, PSI-2, protein structure initiative; 1.20A {Rhodopseudomonas palustris}
Probab=66.20 E-value=3.7 Score=33.12 Aligned_cols=37 Identities=11% Similarity=0.156 Sum_probs=32.5
Q ss_pred CCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCH
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQ 390 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~ 390 (448)
..++|+||.+-.++..++..|++.|+. +..+.||+..
T Consensus 86 ~~~ivvyC~~G~rs~~a~~~L~~~G~~~v~~l~GG~~~ 123 (139)
T 2hhg_A 86 DKKFVFYCAGGLRSALAAKTAQDMGLKPVAHIEGGFGA 123 (139)
T ss_dssp SSEEEEECSSSHHHHHHHHHHHHHTCCSEEEETTHHHH
T ss_pred CCeEEEECCCChHHHHHHHHHHHcCCCCeEEecCCHHH
Confidence 568999999999999999999999995 9999999754
No 321
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=65.92 E-value=9.7 Score=33.44 Aligned_cols=56 Identities=11% Similarity=0.159 Sum_probs=41.9
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQ-----NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
.+.++||.|++++-+..+++.+++. ++.+..++|+.+..++...+ .+..|.++|.+
T Consensus 91 ~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------~~~~Iiv~Tp~ 151 (230)
T 2oxc_A 91 LSTQILILAPTREIAVQIHSVITAIGIKMEGLECHVFIGGTPLSQDKTRL-------KKCHIAVGSPG 151 (230)
T ss_dssp CSCCEEEECSSHHHHHHHHHHHHHHTTTSTTCCEEEECTTSCHHHHHHHT-------TSCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhcccCCceEEEEeCCCCHHHHHHhc-------cCCCEEEECHH
Confidence 3468999999999999999888763 67899999999887665433 12456666654
No 322
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=65.86 E-value=2.1 Score=36.24 Aligned_cols=19 Identities=21% Similarity=0.392 Sum_probs=15.8
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|..+++.|+.|||||...
T Consensus 3 ~g~~I~l~G~~GsGKST~~ 21 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQA 21 (186)
T ss_dssp CEEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 323
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=65.83 E-value=27 Score=31.04 Aligned_cols=57 Identities=11% Similarity=0.080 Sum_probs=42.1
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhC----CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQ----NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~----g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
...++||.++++.-+..+++.+++. ++.+..++|+.+..++...+. .+..|.++|.+
T Consensus 110 ~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------~~~~I~v~Tp~ 170 (249)
T 3ber_A 110 QRLFALVLTPTRELAFQISEQFEALGSSIGVQSAVIVGGIDSMSQSLALA------KKPHIIIATPG 170 (249)
T ss_dssp CSSCEEEECSSHHHHHHHHHHHHHHHGGGTCCEEEECTTSCHHHHHHHHH------TCCSEEEECHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHHhccCCeeEEEEECCCChHHHHHHhc------CCCCEEEECHH
Confidence 4457999999999999888877664 889999999998766544332 23466666654
No 324
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=65.82 E-value=5.3 Score=36.81 Aligned_cols=41 Identities=27% Similarity=0.159 Sum_probs=25.0
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+..|.-+++.||+|+|||..... +...+.... +..++++.
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~-ia~~~~~~~-G~~v~~~~ 71 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQ-QALQWGTAM-GKKVGLAM 71 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHH-HHHHHHHTS-CCCEEEEE
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHH-HHHHHHHHc-CCeEEEEe
Confidence 455678899999999999965433 222222222 22466654
No 325
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=65.61 E-value=6.7 Score=33.17 Aligned_cols=24 Identities=13% Similarity=-0.055 Sum_probs=15.8
Q ss_pred ceeeeccCCChhHHHHHHHHHHhhh
Q psy1548 151 DILCQAKSGMGKTAVFVLATLQQLE 175 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~l~~l~ 175 (448)
-+.+.++.|||||.. +..++..+.
T Consensus 6 ~i~i~G~sGsGKTTl-~~~L~~~l~ 29 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTL-MEKWVAAAV 29 (169)
T ss_dssp EEEEECCTTSSHHHH-HHHHHHHHH
T ss_pred EEEEECCCCCCHHHH-HHHHHHhhH
Confidence 367889999999964 333444443
No 326
>3d1p_A Putative thiosulfate sulfurtransferase YOR285W; atomic structure, atomic resolution structure, PSI, MCSG; HET: MSE; 0.98A {Saccharomyces cerevisiae}
Probab=65.53 E-value=4.2 Score=32.79 Aligned_cols=38 Identities=11% Similarity=0.162 Sum_probs=32.6
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~ 390 (448)
...++++||.+-.++...+..|++.|+. +..+.||+..
T Consensus 90 ~~~~ivvyC~~G~rs~~aa~~L~~~G~~~v~~l~GG~~~ 128 (139)
T 3d1p_A 90 SAKELIFYCASGKRGGEAQKVASSHGYSNTSLYPGSMND 128 (139)
T ss_dssp TTSEEEEECSSSHHHHHHHHHHHTTTCCSEEECTTHHHH
T ss_pred CCCeEEEECCCCchHHHHHHHHHHcCCCCeEEeCCcHHH
Confidence 3568999999999999999999999995 8888898653
No 327
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=65.38 E-value=2.8 Score=37.00 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=16.2
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..|+-+.+.||+|+|||...
T Consensus 21 ~~G~~~~lvGpsGsGKSTLl 40 (218)
T 1z6g_A 21 NNIYPLVICGPSGVGKGTLI 40 (218)
T ss_dssp -CCCCEEEECSTTSSHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHH
Confidence 45788899999999999653
No 328
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=65.38 E-value=2.6 Score=40.53 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
..++++.||+|+|||..+
T Consensus 72 ~~~ill~Gp~GtGKT~la 89 (376)
T 1um8_A 72 KSNILLIGPTGSGKTLMA 89 (376)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CCCEEEECCCCCCHHHHH
Confidence 468999999999999764
No 329
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=65.35 E-value=11 Score=34.41 Aligned_cols=25 Identities=20% Similarity=0.187 Sum_probs=19.9
Q ss_pred eeeeeCcceeeeccCCChhHHHHHH
Q psy1548 144 TKAVLGMDILCQAKSGMGKTAVFVL 168 (448)
Q Consensus 144 ~~~~~g~~vli~apTGsGKT~~~~l 168 (448)
..+..|.-+++.||+|+|||.....
T Consensus 25 ggl~~G~i~~i~G~~GsGKTtl~~~ 49 (279)
T 1nlf_A 25 PNMVAGTVGALVSPGGAGKSMLALQ 49 (279)
T ss_dssp TTEETTSEEEEEESTTSSHHHHHHH
T ss_pred CCccCCCEEEEEcCCCCCHHHHHHH
Confidence 4566788899999999999966443
No 330
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=65.20 E-value=2.6 Score=35.36 Aligned_cols=18 Identities=33% Similarity=0.244 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
|..+++.|+.|+|||...
T Consensus 8 g~~i~l~G~~GsGKSTl~ 25 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVA 25 (175)
T ss_dssp SEEEEEECSTTSCHHHHH
T ss_pred CcEEEEEcCCCCCHHHHH
Confidence 567899999999999764
No 331
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=65.19 E-value=2.6 Score=40.28 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 84 ~~~iLL~GppGtGKT~la 101 (355)
T 2qp9_X 84 TSGILLYGPPGTGKSYLA 101 (355)
T ss_dssp CCCEEEECSTTSCHHHHH
T ss_pred CceEEEECCCCCcHHHHH
Confidence 468999999999999764
No 332
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=65.10 E-value=3.2 Score=41.22 Aligned_cols=19 Identities=37% Similarity=0.567 Sum_probs=16.2
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
++++++.||+|+|||..+.
T Consensus 63 ~~~iLl~GppGtGKT~la~ 81 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALAL 81 (456)
T ss_dssp TCEEEEECCTTSSHHHHHH
T ss_pred CCeEEEECCCcCCHHHHHH
Confidence 4689999999999997653
No 333
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=65.07 E-value=6.3 Score=40.23 Aligned_cols=42 Identities=19% Similarity=0.158 Sum_probs=26.7
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhc-cCCCeEEEEeeccH
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLET-TDSNVYVLVMCHTR 190 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~-~~~~~~~lil~Pt~ 190 (448)
+-+++|.|.||||||.+.-.-++..+.. .+...+.+++=|-.
T Consensus 214 ~pHlLIaG~TGSGKS~~L~tlI~sLl~~~sP~ev~lilIDpKg 256 (574)
T 2iut_A 214 MPHLLVAGTTGSGKSVGVNAMLLSILFKSTPSEARLIMIDPKM 256 (574)
T ss_dssp SCCEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECSSS
T ss_pred CCeeEEECCCCCCHHHHHHHHHHHHHHhCCCcceEEEEeCCCh
Confidence 4689999999999997654434433322 23445566555553
No 334
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=65.03 E-value=2.4 Score=39.57 Aligned_cols=18 Identities=28% Similarity=0.350 Sum_probs=15.4
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
...+++.||+|+|||..+
T Consensus 38 ~~~vll~G~~GtGKT~la 55 (324)
T 1hqc_A 38 LEHLLLFGPPGLGKTTLA 55 (324)
T ss_dssp CCCCEEECCTTCCCHHHH
T ss_pred CCcEEEECCCCCCHHHHH
Confidence 368999999999999664
No 335
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=64.90 E-value=5.9 Score=39.20 Aligned_cols=40 Identities=20% Similarity=0.099 Sum_probs=26.6
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC 187 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~ 187 (448)
.+..|.-+++.|++|+|||...+--+.+.... +..++|++
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~---g~~vl~fS 232 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDN---DDVVNLHS 232 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHT---TCEEEEEC
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHc---CCEEEEEE
Confidence 34557789999999999996544334333332 34677776
No 336
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=64.89 E-value=2.2 Score=40.09 Aligned_cols=22 Identities=27% Similarity=0.323 Sum_probs=18.0
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|.++++.||+|+|||...
T Consensus 42 ~l~~~~~vll~G~pGtGKT~la 63 (331)
T 2r44_A 42 GICTGGHILLEGVPGLAKTLSV 63 (331)
T ss_dssp HHHHTCCEEEESCCCHHHHHHH
T ss_pred HHHcCCeEEEECCCCCcHHHHH
Confidence 3445789999999999999654
No 337
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=64.87 E-value=2.6 Score=39.67 Aligned_cols=17 Identities=35% Similarity=0.542 Sum_probs=14.8
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
.++++.||+|+|||..+
T Consensus 56 ~~vll~G~~GtGKT~la 72 (338)
T 3pfi_A 56 DHILFSGPAGLGKTTLA 72 (338)
T ss_dssp CCEEEECSTTSSHHHHH
T ss_pred CeEEEECcCCCCHHHHH
Confidence 47999999999999764
No 338
>3h11_B Caspase-8; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} SCOP: c.17.1.1 PDB: 2k7z_A 1i4e_B 2fun_B 2c2z_B*
Probab=64.66 E-value=20 Score=32.74 Aligned_cols=50 Identities=18% Similarity=0.143 Sum_probs=42.4
Q ss_pred CCCeEEEEEC---------------------ccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 353 EFNQVVIFVK---------------------SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 353 ~~~~~IIF~~---------------------s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
+.+-+|||+| +...++.|.+.|++.|+.|. .+.+++.++-.+++++|.+.
T Consensus 16 ~rG~aLIInn~~F~~~~~~~~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 86 (271)
T 3h11_B 16 PRGYCLIINNHNFAKAREKVPKLHSIRDRNGTHLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLM 86 (271)
T ss_dssp SCCEEEEEECCCCSHHHHTCGGGTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred CCCEEEEEEchhcCcccccccccccCCCCCCcHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHh
Confidence 3467888888 44679999999999999975 67789999999999999874
No 339
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=64.30 E-value=2.8 Score=34.84 Aligned_cols=16 Identities=19% Similarity=0.038 Sum_probs=13.6
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.|+.|+|||...
T Consensus 3 ~i~l~G~~GsGKsT~~ 18 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVA 18 (173)
T ss_dssp EEEEECSSSSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4788999999999764
No 340
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=64.26 E-value=2.9 Score=36.09 Aligned_cols=19 Identities=26% Similarity=0.337 Sum_probs=16.1
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+++.||.|+|||...
T Consensus 28 ~g~~i~l~G~~GsGKSTl~ 46 (200)
T 4eun_A 28 PTRHVVVMGVSGSGKTTIA 46 (200)
T ss_dssp CCCEEEEECCTTSCHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4678999999999999754
No 341
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=64.11 E-value=2.9 Score=36.99 Aligned_cols=22 Identities=27% Similarity=0.422 Sum_probs=16.6
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|+-+.+.||+|+|||...
T Consensus 12 ~~~~G~ii~l~GpsGsGKSTLl 33 (219)
T 1s96_A 12 HMAQGTLYIVSAPSGAGKSSLI 33 (219)
T ss_dssp ---CCCEEEEECCTTSCHHHHH
T ss_pred cCCCCcEEEEECCCCCCHHHHH
Confidence 3456888999999999999754
No 342
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=63.97 E-value=2.8 Score=40.06 Aligned_cols=18 Identities=33% Similarity=0.303 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 117 ~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp CSEEEEESSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999764
No 343
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=63.66 E-value=2.9 Score=40.51 Aligned_cols=18 Identities=28% Similarity=0.324 Sum_probs=15.9
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
++++|+.||+|+|||..+
T Consensus 148 ~~~vLL~GppGtGKT~la 165 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLA 165 (389)
T ss_dssp CSEEEEESSTTSCHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 578999999999999764
No 344
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=63.54 E-value=5.2 Score=39.45 Aligned_cols=18 Identities=33% Similarity=0.268 Sum_probs=14.9
Q ss_pred cceeeeccCCChhHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~ 167 (448)
+.+++.+++|+|||....
T Consensus 100 ~vI~ivG~~GvGKTTla~ 117 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAA 117 (432)
T ss_dssp CCEEEECCSSSSTTHHHH
T ss_pred eEEEEECCCCCCHHHHHH
Confidence 578899999999996643
No 345
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=63.40 E-value=3.5 Score=38.92 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=14.3
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+.+++.||||+|||...
T Consensus 6 ~~i~i~GptGsGKTtla 22 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLA 22 (323)
T ss_dssp EEEEEECCTTSCHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 36889999999999764
No 346
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=63.36 E-value=2.9 Score=34.98 Aligned_cols=16 Identities=31% Similarity=0.254 Sum_probs=13.6
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.|+.|||||...
T Consensus 4 ~I~i~G~~GsGKST~a 19 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWA 19 (181)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEecCCCCCHHHHH
Confidence 4789999999999754
No 347
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=63.15 E-value=2.8 Score=38.81 Aligned_cols=17 Identities=29% Similarity=0.413 Sum_probs=14.7
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
..+++.||+|+|||..+
T Consensus 48 ~~~ll~G~~GtGKt~la 64 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELA 64 (311)
T ss_dssp EEEEEESCSSSSHHHHH
T ss_pred eEEEEECCCCcCHHHHH
Confidence 46899999999999764
No 348
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=62.90 E-value=83 Score=29.58 Aligned_cols=18 Identities=17% Similarity=0.314 Sum_probs=14.7
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
...+.+.|+.|+|||..+
T Consensus 79 ~~~I~i~G~~G~GKSTl~ 96 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAI 96 (355)
T ss_dssp SEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 346889999999999654
No 349
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=62.56 E-value=3.1 Score=41.95 Aligned_cols=24 Identities=17% Similarity=0.242 Sum_probs=19.4
Q ss_pred ceeeeeCcceeeeccCCChhHHHH
Q psy1548 143 GTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 143 ~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
...+..|.++++.||+|+|||..+
T Consensus 35 ~~al~~~~~VLL~GpPGtGKT~LA 58 (500)
T 3nbx_X 35 LLAALSGESVFLLGPPGIAKSLIA 58 (500)
T ss_dssp HHHHHHTCEEEEECCSSSSHHHHH
T ss_pred HHHHhcCCeeEeecCchHHHHHHH
Confidence 344556899999999999999753
No 350
>2h54_A Caspase-1; allosteric site, dimer interface, hydrolase; HET: PHQ; 1.80A {Homo sapiens} PDB: 1rwm_A* 1rwk_A* 1rwo_A* 1rwp_A* 1rwv_A* 1rww_A* 1rwn_A* 2h48_A* 2h4w_A* 1rwx_A* 2hbq_A* 2hby_A* 1ibc_A 3d6m_A* 2h4y_A* 2h51_A* 3d6f_A* 3d6h_A* 2hbz_A* 2hbr_A* ...
Probab=62.53 E-value=35 Score=28.88 Aligned_cols=48 Identities=10% Similarity=0.259 Sum_probs=40.8
Q ss_pred CCeEEEEECcc-----------HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 354 FNQVVIFVKSV-----------TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 354 ~~~~IIF~~s~-----------~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
.+.+||+.|.. ..++.|++.|++.|+.|. ++.+++.++-.+.+++|.+
T Consensus 43 ~g~ALIInn~~f~~~~~R~G~~~Da~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~f~~ 101 (178)
T 2h54_A 43 TRLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 101 (178)
T ss_dssp CCEEEEEECCCCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred CCEEEEEehhhcCCCccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHh
Confidence 35688888764 789999999999999976 6678999999999999965
No 351
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=62.52 E-value=3.4 Score=35.83 Aligned_cols=24 Identities=17% Similarity=0.058 Sum_probs=18.9
Q ss_pred ceeeeeCcceeeeccCCChhHHHH
Q psy1548 143 GTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 143 ~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+.+..|.-+.+.|++|||||...
T Consensus 15 ~~~~~~~~~i~i~G~~GsGKSTl~ 38 (207)
T 2qt1_A 15 VPRGSKTFIIGISGVTNSGKTTLA 38 (207)
T ss_dssp CCCSCCCEEEEEEESTTSSHHHHH
T ss_pred cccCCCCeEEEEECCCCCCHHHHH
Confidence 455556778899999999999653
No 352
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=62.43 E-value=3.8 Score=39.01 Aligned_cols=16 Identities=25% Similarity=0.231 Sum_probs=13.7
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-++|.||||||||...
T Consensus 9 lI~I~GptgSGKTtla 24 (340)
T 3d3q_A 9 LIVIVGPTASGKTELS 24 (340)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred eEEEECCCcCcHHHHH
Confidence 5789999999999654
No 353
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=62.17 E-value=3.4 Score=35.93 Aligned_cols=22 Identities=27% Similarity=0.439 Sum_probs=16.4
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|+-+.+.||+|+|||...
T Consensus 16 ~i~~Gei~~l~GpnGsGKSTLl 37 (207)
T 1znw_A 16 PAAVGRVVVLSGPSAVGKSTVV 37 (207)
T ss_dssp ---CCCEEEEECSTTSSHHHHH
T ss_pred CCCCCCEEEEECCCCCCHHHHH
Confidence 4556788899999999999653
No 354
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=62.12 E-value=5.2 Score=38.88 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=18.9
Q ss_pred eeeeCcceeeeccCCChhHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~ 167 (448)
.+-.|..+.+.+|+|+|||....
T Consensus 170 pi~rGQr~~IvG~sG~GKTtLl~ 192 (422)
T 3ice_A 170 PIGRGQRGLIVAPPKAGKTMLLQ 192 (422)
T ss_dssp CCBTTCEEEEECCSSSSHHHHHH
T ss_pred eecCCcEEEEecCCCCChhHHHH
Confidence 34568999999999999997653
No 355
>3ilm_A ALR3790 protein; rhodanese-like, NSR437H, NESG, structural genomics, protein structure initiative, northeast structural genomics consortium; 2.26A {Nostoc SP} PDB: 2kl3_A
Probab=61.73 E-value=5.2 Score=32.58 Aligned_cols=38 Identities=11% Similarity=0.239 Sum_probs=32.1
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~~ 390 (448)
...++|+||.+-.++...+..|+..|+. +..+.||+..
T Consensus 55 ~~~~ivvyC~~g~rs~~aa~~L~~~G~~~v~~l~GG~~~ 93 (141)
T 3ilm_A 55 KSRDIYVYGAGDEQTSQAVNLLRSAGFEHVSELKGGLAA 93 (141)
T ss_dssp TTSEEEEECSSHHHHHHHHHHHHHTTCCSEEECTTHHHH
T ss_pred CCCeEEEEECCChHHHHHHHHHHHcCCCCEEEecCHHHH
Confidence 3457999999988999999999999985 8888898654
No 356
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=61.57 E-value=3.9 Score=39.87 Aligned_cols=16 Identities=25% Similarity=0.459 Sum_probs=13.3
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-++|.||||+|||...
T Consensus 4 ~i~i~GptgsGKttla 19 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLS 19 (409)
T ss_dssp EEEEEECSSSSHHHHH
T ss_pred EEEEECcchhhHHHHH
Confidence 3678999999999664
No 357
>1vee_A Proline-rich protein family; hypothetical protein, structural genomics, rhodanese domain, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} PDB: 2dcq_A
Probab=61.35 E-value=4.6 Score=32.42 Aligned_cols=36 Identities=19% Similarity=0.196 Sum_probs=31.6
Q ss_pred CCeEEEEECccHHHHHHHHHHHhCCCc-EEEEeCCCC
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSEQNFP-AVSIHRGMT 389 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~~g~~-~~~lh~~~~ 389 (448)
..++++||.+=.++...+..|++.|+. +..+.||+.
T Consensus 74 ~~~ivv~C~sG~RS~~aa~~L~~~G~~~v~~l~GG~~ 110 (134)
T 1vee_A 74 NTTLYILDKFDGNSELVAELVALNGFKSAYAIKDGAE 110 (134)
T ss_dssp GCEEEEECSSSTTHHHHHHHHHHHTCSEEEECTTTTT
T ss_pred CCEEEEEeCCCCcHHHHHHHHHHcCCcceEEecCCcc
Confidence 468999999988899999999999994 888889984
No 358
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=61.21 E-value=3.4 Score=37.12 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.8
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.||+|+|||...
T Consensus 51 g~ll~G~~G~GKTtl~ 66 (254)
T 1ixz_A 51 GVLLVGPPGVGKTHLA 66 (254)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 3999999999999653
No 359
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=60.99 E-value=3.4 Score=35.67 Aligned_cols=19 Identities=32% Similarity=0.373 Sum_probs=15.9
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|+|||...
T Consensus 24 ~g~~i~l~G~sGsGKSTl~ 42 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLA 42 (200)
T ss_dssp CCEEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 4677889999999999664
No 360
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=60.87 E-value=2.9 Score=37.04 Aligned_cols=22 Identities=32% Similarity=0.431 Sum_probs=13.8
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+..|+-+.+.||+|+|||...
T Consensus 23 ~v~~G~ii~l~Gp~GsGKSTl~ 44 (231)
T 3lnc_A 23 LKSVGVILVLSSPSGCGKTTVA 44 (231)
T ss_dssp CEECCCEEEEECSCC----CHH
T ss_pred ccCCCCEEEEECCCCCCHHHHH
Confidence 3456788899999999999653
No 361
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=60.46 E-value=3.1 Score=35.41 Aligned_cols=18 Identities=17% Similarity=0.276 Sum_probs=14.4
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
|.-+++.||+|+|||...
T Consensus 2 g~ii~l~G~~GaGKSTl~ 19 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTC 19 (189)
T ss_dssp EEEEEEECSTTSSHHHHH
T ss_pred CeEEEEECCCCCcHHHHH
Confidence 345788999999999754
No 362
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=60.25 E-value=3.6 Score=34.96 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.1
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+++.|+.|+|||...
T Consensus 5 ~~~I~l~G~~GsGKST~~ 22 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLS 22 (193)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 363
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=60.21 E-value=3.7 Score=35.27 Aligned_cols=19 Identities=26% Similarity=0.237 Sum_probs=16.1
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|+-+++.|+.|||||...
T Consensus 3 ~~~~I~l~G~~GsGKsT~~ 21 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQC 21 (204)
T ss_dssp CCCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677899999999999764
No 364
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=59.97 E-value=3.6 Score=34.86 Aligned_cols=18 Identities=17% Similarity=0.270 Sum_probs=15.0
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+++.|++|||||...
T Consensus 3 ~~~I~l~G~~GsGKsT~a 20 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQC 20 (196)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456889999999999764
No 365
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=59.06 E-value=3.9 Score=40.48 Aligned_cols=18 Identities=28% Similarity=0.246 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+++.||+|+|||..+
T Consensus 167 ~~~vLL~GppGtGKT~lA 184 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLA 184 (444)
T ss_dssp CSEEEEECSTTSSHHHHH
T ss_pred CceEEEECCCCCCHHHHH
Confidence 378999999999999764
No 366
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=58.88 E-value=2.6 Score=39.82 Aligned_cols=18 Identities=22% Similarity=0.289 Sum_probs=15.2
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.++++.||+|+|||..+
T Consensus 45 ~~~vLl~G~~GtGKT~la 62 (350)
T 1g8p_A 45 IGGVLVFGDRGTGKSTAV 62 (350)
T ss_dssp GCCEEEECCGGGCTTHHH
T ss_pred CceEEEECCCCccHHHHH
Confidence 356999999999999764
No 367
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=58.60 E-value=5.6 Score=34.73 Aligned_cols=23 Identities=17% Similarity=-0.039 Sum_probs=18.7
Q ss_pred eeeeCcceeeeccCCChhHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~ 167 (448)
.+..|.-+.+.+|+|+|||....
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~ 43 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAH 43 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHH
Confidence 45668889999999999996543
No 368
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=58.57 E-value=70 Score=31.95 Aligned_cols=37 Identities=16% Similarity=0.164 Sum_probs=21.8
Q ss_pred CcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
.+.+++.+++|+|||....--+ ..+... +.+++++..
T Consensus 101 ~~vI~ivG~~GvGKTTl~~kLA-~~l~~~--G~kVllVd~ 137 (504)
T 2j37_W 101 QNVIMFVGLQGSGKTTTCSKLA-YYYQRK--GWKTCLICA 137 (504)
T ss_dssp -EEEEEECSTTSSHHHHHHHHH-HHHHHT--TCCEEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHH-HHHHhC--CCeEEEEec
Confidence 3468889999999997643322 223222 335666553
No 369
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=58.55 E-value=26 Score=30.78 Aligned_cols=56 Identities=11% Similarity=0.202 Sum_probs=42.3
Q ss_pred CCeEEEEECccHHHHHHHHHHHh----CCCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSE----QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~----~g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
+.++||.|++++-+..+++.+++ .++.+..++|+.+..++...+.. +..|.++|.+
T Consensus 102 ~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~------~~~I~v~Tp~ 161 (242)
T 3fe2_A 102 GPICLVLAPTRELAQQVQQVAAEYCRACRLKSTCIYGGAPKGPQIRDLER------GVEICIATPG 161 (242)
T ss_dssp CCSEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHH------CCSEEEECHH
T ss_pred CCEEEEEeCcHHHHHHHHHHHHHHHhhcCceEEEEECCCChHHHHHHhcC------CCCEEEECHH
Confidence 45799999999999988877765 48899999999998776655443 2356666654
No 370
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=58.30 E-value=2 Score=37.61 Aligned_cols=23 Identities=22% Similarity=0.287 Sum_probs=18.2
Q ss_pred eeeeeCcceeeeccCCChhHHHH
Q psy1548 144 TKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 144 ~~~~~g~~vli~apTGsGKT~~~ 166 (448)
.....|.-+++.|+.|+|||...
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~ 42 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLA 42 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHH
Confidence 34455788999999999999654
No 371
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=58.25 E-value=10 Score=36.14 Aligned_cols=42 Identities=17% Similarity=0.020 Sum_probs=27.2
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeecc
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHT 189 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt 189 (448)
.+..|+-+++.+|.|+|||...+..+.... .. +..++++.--
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~-~~--g~~vlyi~~E 98 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQ-AA--GGIAAFIDAE 98 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHH-HT--TCCEEEEESS
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-hC--CCeEEEEECC
Confidence 455678899999999999966443333322 22 3357777643
No 372
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=58.03 E-value=4.1 Score=35.10 Aligned_cols=18 Identities=33% Similarity=0.316 Sum_probs=15.1
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+-+++.|+.|+|||...
T Consensus 18 ~~~I~l~G~~GsGKSTla 35 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVG 35 (202)
T ss_dssp SSCEEEECSTTSCHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 357899999999999764
No 373
>3p45_A Caspase-6; protease, huntington'S disease, physio PH, competitive inhibition, hydrolase; 2.53A {Homo sapiens}
Probab=58.01 E-value=61 Score=27.44 Aligned_cols=51 Identities=20% Similarity=0.192 Sum_probs=42.2
Q ss_pred CCCeEEEEECcc--------------HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 353 EFNQVVIFVKSV--------------TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 353 ~~~~~IIF~~s~--------------~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+.+.+|||+|.. ..++.|.+.|+..|+.|. +|.+++.++-.+.+++|.+..
T Consensus 43 ~rG~aLIinn~~F~~~~~l~~R~Gt~~D~~~L~~~F~~LGF~V~-~~~dlt~~em~~~l~~~~~~d 107 (179)
T 3p45_A 43 RRGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTVS 107 (179)
T ss_dssp BCCEEEEEECCSCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTSC
T ss_pred ccCEEEEEeCcccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHhhhh
Confidence 346789998853 579999999999999976 556899999999999997654
No 374
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=58.01 E-value=46 Score=30.62 Aligned_cols=19 Identities=26% Similarity=0.202 Sum_probs=15.1
Q ss_pred CcceeeeccCCChhHHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~~ 167 (448)
++-+.+.+++|+|||....
T Consensus 98 ~~vi~i~G~~G~GKTT~~~ 116 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAG 116 (297)
T ss_dssp SEEEEEECSSCSSTTHHHH
T ss_pred CeEEEEECCCCCCHHHHHH
Confidence 5667788999999996543
No 375
>1qtn_A Caspase-8; apoptosis, dithiane-DIOL, caspase, cysteine-protease, hydrol hydrolase inhibitor complex; 1.20A {Homo sapiens} SCOP: c.17.1.1 PDB: 3kjn_A* 3kjq_A* 2y1l_A 2c2z_A 1qdu_A* 1f9e_A*
Probab=57.99 E-value=39 Score=28.20 Aligned_cols=40 Identities=20% Similarity=0.165 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 364 ~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
...++.|.+.|+..|+.|. .|.+++.++-.+.+++|.+..
T Consensus 54 ~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~d 93 (164)
T 1qtn_A 54 HLDAGALTTTFEELHFEIK-PHDDCTVEQIYEILKIYQLMD 93 (164)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHhh
Confidence 5778999999999999975 678999999999999997653
No 376
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=57.86 E-value=3.8 Score=37.87 Aligned_cols=18 Identities=28% Similarity=0.364 Sum_probs=15.0
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+++.||+|+|||...
T Consensus 33 ~~livl~G~sGsGKSTla 50 (287)
T 1gvn_B 33 PTAFLLGGQPGSGKTSLR 50 (287)
T ss_dssp CEEEEEECCTTSCTHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999654
No 377
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=57.72 E-value=4.4 Score=35.69 Aligned_cols=19 Identities=21% Similarity=0.184 Sum_probs=15.4
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.|++|||||...
T Consensus 6 ~~~~I~l~G~~GsGKsT~a 24 (227)
T 1zd8_A 6 RLLRAVIMGAPGSGKGTVS 24 (227)
T ss_dssp -CCEEEEEECTTSSHHHHH
T ss_pred cCcEEEEECCCCCCHHHHH
Confidence 3467899999999999764
No 378
>2l8b_A Protein TRAI, DNA helicase I; RECD, hydrolase; NMR {Escherichia coli}
Probab=57.51 E-value=9.5 Score=32.70 Aligned_cols=52 Identities=8% Similarity=0.010 Sum_probs=34.4
Q ss_pred cceeeeeC--cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHH
Q psy1548 142 FGTKAVLG--MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQ 195 (448)
Q Consensus 142 ~~~~~~~g--~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q 195 (448)
+...++.. .=.+++++-|++|+...+-.++.... ..|.++.+|+|+..-...
T Consensus 42 a~~~l~~s~~~~~iv~g~ggs~~~~~~~a~L~~~a~--~~Gr~V~vLAp~~~s~~~ 95 (189)
T 2l8b_A 42 AVSVLAQDRPSLAIVSGQGGAAGQRERVAELVMMAR--EQGREVQIIAADRRSQMN 95 (189)
T ss_dssp HHHHHHHHSCCEECCBCSSCSHHHHHHHHHHHHHHH--HTTCCEEEECSTTHHHHH
T ss_pred HHHHHhccCCceEEEecccchHHHHHHHHHHHHHHH--hcCeEEEEEcCchHHHHH
Confidence 55555443 34678899999999875444443322 245689999999875443
No 379
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=57.28 E-value=1.2e+02 Score=30.05 Aligned_cols=25 Identities=24% Similarity=0.214 Sum_probs=19.7
Q ss_pred ceeeeeCcceeeeccCCChhHHHHH
Q psy1548 143 GTKAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 143 ~~~~~~g~~vli~apTGsGKT~~~~ 167 (448)
+..+..|+.+++.+|.|.|||....
T Consensus 145 L~pi~kGq~~~i~G~sGvGKTtL~~ 169 (473)
T 1sky_E 145 LAPYIKGGKIGLFGGAGVGKTVLIQ 169 (473)
T ss_dssp HSCEETTCEEEEECCSSSCHHHHHH
T ss_pred HhhhccCCEEEEECCCCCCccHHHH
Confidence 3445668899999999999996643
No 380
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=57.23 E-value=4.7 Score=34.28 Aligned_cols=19 Identities=21% Similarity=0.130 Sum_probs=15.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQC 26 (196)
T ss_dssp TSCEEEEEECTTSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 381
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=57.03 E-value=11 Score=36.02 Aligned_cols=41 Identities=10% Similarity=-0.003 Sum_probs=27.0
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
-+..|+-+++.++.|+|||...+-.+.... .. +..++++..
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~-~~--g~~vlyid~ 99 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQ-RE--GKTCAFIDA 99 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHH-HT--TCCEEEEES
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHH-HC--CCeEEEEeC
Confidence 355678899999999999966543333322 22 235777775
No 382
>4f67_A UPF0176 protein LPG2838; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium; 1.79A {Legionella pneumophila subsp}
Probab=56.95 E-value=10 Score=34.58 Aligned_cols=48 Identities=17% Similarity=0.256 Sum_probs=38.4
Q ss_pred HHHHHHhhCCCCeEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCCCHH
Q psy1548 344 KLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNF-PAVSIHRGMTQE 391 (448)
Q Consensus 344 ~L~~ll~~~~~~~~IIF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~~~ 391 (448)
.+...+......++++||.+-.++...+..|++.|+ ++..+.||+..-
T Consensus 171 ~l~~~l~~~kdk~IVvyC~~G~RS~~Aa~~L~~~Gf~nV~~L~GGi~aW 219 (265)
T 4f67_A 171 YVQRNLIDKKDKKIAMFCTGGIRCEKTTAYMKELGFEHVYQLHDGILNY 219 (265)
T ss_dssp HHHHHTGGGTTSCEEEECSSSHHHHHHHHHHHHHTCSSEEEETTHHHHH
T ss_pred HHHHhhhhCCCCeEEEEeCCChHHHHHHHHHHHcCCCCEEEecCHHHHH
Confidence 333344445567899999999999999999999999 689999997654
No 383
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=56.89 E-value=4.7 Score=33.78 Aligned_cols=17 Identities=24% Similarity=0.321 Sum_probs=14.4
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+.+++.++.|||||...
T Consensus 5 ~~i~i~G~~GsGKsTla 21 (175)
T 1via_A 5 KNIVFIGFMGSGKSTLA 21 (175)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 36889999999999764
No 384
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=56.86 E-value=4.2 Score=35.35 Aligned_cols=18 Identities=17% Similarity=0.180 Sum_probs=15.1
Q ss_pred eCcceeeeccCCChhHHH
Q psy1548 148 LGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~ 165 (448)
.|.-+.|.||+|||||..
T Consensus 21 ~g~~v~I~G~sGsGKSTl 38 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTL 38 (208)
T ss_dssp SCEEEEEECCTTSCTHHH
T ss_pred CCeEEEEECCCCCCHHHH
Confidence 466788999999999964
No 385
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=56.64 E-value=4.5 Score=34.04 Aligned_cols=19 Identities=37% Similarity=0.429 Sum_probs=15.6
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+++.|+.|||||...
T Consensus 4 ~g~~i~l~G~~GsGKST~~ 22 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVS 22 (179)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999753
No 386
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=56.46 E-value=4.5 Score=35.05 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=14.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
|.-+.+.||+|||||...
T Consensus 6 ~~~i~i~G~~GsGKSTl~ 23 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLA 23 (211)
T ss_dssp CEEEEEEESTTSSHHHHH
T ss_pred cEEEEEECCCCCCHHHHH
Confidence 455779999999999653
No 387
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=56.33 E-value=5.1 Score=33.81 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=14.4
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
..+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIG 19 (184)
T ss_dssp CSEEEECSTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45889999999999764
No 388
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=56.24 E-value=14 Score=33.65 Aligned_cols=39 Identities=5% Similarity=-0.060 Sum_probs=33.6
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCC-cEEEEeCCCCHH
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNF-PAVSIHRGMTQE 391 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~-~~~~lh~~~~~~ 391 (448)
...++|+||.+-.++...+..|+..|+ ++..+.|++..-
T Consensus 229 ~~~~ivv~C~~G~rs~~a~~~L~~~G~~~v~~~~GG~~~W 268 (280)
T 1urh_A 229 YDKPIIVSCGSGVTAAVVLLALATLDVPNVKLYDGAWSEW 268 (280)
T ss_dssp SSSCEEEECCSSSTHHHHHHHHHHTTCSSCEEECCSCCC-
T ss_pred CCCCEEEECChHHHHHHHHHHHHHcCCCCceeeCChHHHH
Confidence 456899999998899999999999999 599999998754
No 389
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=56.24 E-value=10 Score=35.60 Aligned_cols=15 Identities=20% Similarity=0.204 Sum_probs=12.6
Q ss_pred eeeeccCCChhHHHH
Q psy1548 152 ILCQAKSGMGKTAVF 166 (448)
Q Consensus 152 vli~apTGsGKT~~~ 166 (448)
+-+.||+|||||...
T Consensus 95 igI~GpsGSGKSTl~ 109 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTS 109 (321)
T ss_dssp EEEECCTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678899999999653
No 390
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.22 E-value=10 Score=35.29 Aligned_cols=19 Identities=32% Similarity=0.480 Sum_probs=15.6
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|+|||...
T Consensus 101 ~g~vi~lvG~nGsGKTTll 119 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTI 119 (304)
T ss_dssp SSSEEEEECSTTSSHHHHH
T ss_pred CCeEEEEECCCCCcHHHHH
Confidence 4667889999999999653
No 391
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=56.08 E-value=7.4 Score=36.45 Aligned_cols=14 Identities=36% Similarity=0.420 Sum_probs=12.3
Q ss_pred eeeeccCCChhHHH
Q psy1548 152 ILCQAKSGMGKTAV 165 (448)
Q Consensus 152 vli~apTGsGKT~~ 165 (448)
+++.|+.|+|||..
T Consensus 7 ~~i~G~~GaGKTTl 20 (318)
T 1nij_A 7 TLLTGFLGAGKTTL 20 (318)
T ss_dssp EEEEESSSSSCHHH
T ss_pred EEEEecCCCCHHHH
Confidence 67899999999965
No 392
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=56.08 E-value=4.5 Score=34.84 Aligned_cols=19 Identities=26% Similarity=0.326 Sum_probs=15.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+++.|+.|||||...
T Consensus 3 ~~~~I~i~G~~GsGKsT~~ 21 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQA 21 (213)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHH
Confidence 3567899999999999764
No 393
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=55.92 E-value=6.9 Score=43.14 Aligned_cols=45 Identities=16% Similarity=0.227 Sum_probs=39.9
Q ss_pred cceeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccccce
Q psy1548 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT 144 (448)
Q Consensus 99 ~~~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~~~~ 144 (448)
-+|+|+|+.+..|+|.|.+ .++.+..|..-..|-|.+||++|..+
T Consensus 650 i~ILIvvd~lltGfDiP~l-~tlylDkpl~~~~liQaIGRtnR~~~ 694 (1038)
T 2w00_A 650 IDLLIVVGMFLTGFDAPTL-NTLFVDKNLRYHGLMQAFSRTNRIYD 694 (1038)
T ss_dssp SSEEEESSTTSSSCCCTTE-EEEEEESCCCHHHHHHHHHTTCCCCC
T ss_pred CeEEEEcchHHhCcCcccc-cEEEEccCCCccceeehhhccCcCCC
Confidence 3899999999999999999 66778999988888999999999665
No 394
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=55.89 E-value=4.7 Score=36.83 Aligned_cols=16 Identities=31% Similarity=0.495 Sum_probs=13.8
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.+|+|+|||...
T Consensus 75 gvll~Gp~GtGKTtl~ 90 (278)
T 1iy2_A 75 GVLLVGPPGVGKTHLA 90 (278)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCcChHHHHH
Confidence 3999999999999653
No 395
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=55.79 E-value=4.9 Score=33.05 Aligned_cols=16 Identities=25% Similarity=0.391 Sum_probs=13.2
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-.+|.+|+|+|||...
T Consensus 25 ~~~I~G~NGsGKStil 40 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLL 40 (149)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4578899999999763
No 396
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=55.64 E-value=4.9 Score=34.94 Aligned_cols=17 Identities=24% Similarity=0.272 Sum_probs=14.1
Q ss_pred ceeeeccCCChhHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFV 167 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~ 167 (448)
.+++.||.|||||...-
T Consensus 2 ~I~l~G~~GsGKsT~a~ 18 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAE 18 (216)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 47899999999997643
No 397
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=55.42 E-value=5.4 Score=35.65 Aligned_cols=19 Identities=26% Similarity=0.270 Sum_probs=16.0
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|.-+.+.||+|+|||..
T Consensus 29 ~~Ge~~~iiG~nGsGKSTL 47 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTM 47 (235)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3478889999999999964
No 398
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=55.40 E-value=4.7 Score=36.99 Aligned_cols=16 Identities=31% Similarity=0.461 Sum_probs=13.9
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.||.|+|||...
T Consensus 46 GvlL~Gp~GtGKTtLa 61 (274)
T 2x8a_A 46 GVLLAGPPGCGKTLLA 61 (274)
T ss_dssp EEEEESSTTSCHHHHH
T ss_pred eEEEECCCCCcHHHHH
Confidence 3999999999999754
No 399
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=55.18 E-value=5.2 Score=35.02 Aligned_cols=18 Identities=11% Similarity=0.248 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~~ 22 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQC 22 (222)
T ss_dssp SCCEEEEESTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467899999999999764
No 400
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=55.16 E-value=5.2 Score=34.97 Aligned_cols=18 Identities=17% Similarity=0.283 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.|+.|||||...
T Consensus 4 ~~~I~l~G~~GsGKsT~a 21 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQA 21 (220)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 467899999999999764
No 401
>3h11_A CAsp8 and FADD-like apoptosis regulator; cell death, apoptosis, caspase, alternative splicing, HOST- virus interaction, polymorphism, cytoplasm, disease mutation; 1.90A {Homo sapiens} PDB: 3h13_A
Probab=55.14 E-value=5.8 Score=36.43 Aligned_cols=50 Identities=6% Similarity=-0.008 Sum_probs=44.6
Q ss_pred CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 353 EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 353 ~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
+.+-+|||+|+...++.|.+.|+..|+.|. .|.+++.++-.+.+++|.+.
T Consensus 42 ~rG~~LIinn~~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~ 91 (272)
T 3h11_A 42 PLGICLIIDCIGNETELLRDTFTSLGYEVQ-KFLHLSMHGISQILGQFACM 91 (272)
T ss_dssp SSEEEEEEESSCCCCSHHHHHHHHHTEEEE-EEESCBHHHHHHHHHHHHTC
T ss_pred cceEEEEECCchHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHhc
Confidence 356799999999999999999999999976 56789999999999999874
No 402
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=55.05 E-value=13 Score=39.59 Aligned_cols=18 Identities=28% Similarity=0.377 Sum_probs=15.5
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+.+|+.||.|+|||+.+
T Consensus 511 ~~gvLl~GPPGtGKT~lA 528 (806)
T 3cf2_A 511 SKGVLFYGPPGCGKTLLA 528 (806)
T ss_dssp CSCCEEESSTTSSHHHHH
T ss_pred CceEEEecCCCCCchHHH
Confidence 467999999999999764
No 403
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=55.02 E-value=5.3 Score=34.00 Aligned_cols=18 Identities=22% Similarity=0.147 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+++.|+.|||||...
T Consensus 12 ~~~I~l~G~~GsGKsT~a 29 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQC 29 (199)
T ss_dssp SCEEEEEECTTSSHHHHH
T ss_pred CCEEEEECCCCCCHHHHH
Confidence 567899999999999764
No 404
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=54.77 E-value=5.3 Score=33.15 Aligned_cols=18 Identities=17% Similarity=0.224 Sum_probs=15.3
Q ss_pred cceeeeccCCChhHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~ 167 (448)
.++++.|+.|||||.+.-
T Consensus 8 ~~i~l~G~~GsGKSTva~ 25 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQ 25 (168)
T ss_dssp CEEEEESCTTSSHHHHHH
T ss_pred ceEEEECCCCCCHHHHHH
Confidence 578999999999997653
No 405
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=54.52 E-value=86 Score=33.55 Aligned_cols=18 Identities=28% Similarity=0.425 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
..++++.||+|+|||...
T Consensus 191 ~~~vlL~G~pG~GKT~la 208 (854)
T 1qvr_A 191 KNNPVLIGEPGVGKTAIV 208 (854)
T ss_dssp CCCCEEEECTTSCHHHHH
T ss_pred CCceEEEcCCCCCHHHHH
Confidence 358999999999999754
No 406
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=54.40 E-value=5.3 Score=34.76 Aligned_cols=16 Identities=19% Similarity=0.243 Sum_probs=13.8
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.||.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQG 17 (216)
T ss_dssp EEEEECSTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 407
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=54.34 E-value=6.4 Score=37.10 Aligned_cols=17 Identities=29% Similarity=0.489 Sum_probs=14.7
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
..+++.||+|+|||..+
T Consensus 52 ~~~ll~Gp~G~GKTTLa 68 (334)
T 1in4_A 52 DHVLLAGPPGLGKTTLA 68 (334)
T ss_dssp CCEEEESSTTSSHHHHH
T ss_pred CeEEEECCCCCcHHHHH
Confidence 57899999999999764
No 408
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=54.21 E-value=11 Score=35.96 Aligned_cols=43 Identities=14% Similarity=-0.014 Sum_probs=25.5
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhh-hccCC--CeEEEEeec
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQL-ETTDS--NVYVLVMCH 188 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l-~~~~~--~~~~lil~P 188 (448)
+..|.-+.+.+|+|+|||......+.... ....+ +..++++.-
T Consensus 128 i~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~ 173 (349)
T 1pzn_A 128 IETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDT 173 (349)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEES
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeC
Confidence 44567889999999999965443332211 11111 236677764
No 409
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=54.15 E-value=5.6 Score=33.03 Aligned_cols=17 Identities=29% Similarity=0.256 Sum_probs=14.3
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+.+++.|+.|||||...
T Consensus 3 ~~I~l~G~~GsGKsT~a 19 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVG 19 (173)
T ss_dssp CCEEEESCTTSSHHHHH
T ss_pred ceEEEECCCCCCHHHHH
Confidence 45889999999999764
No 410
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=54.15 E-value=5.9 Score=35.84 Aligned_cols=22 Identities=27% Similarity=0.228 Sum_probs=18.1
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
..+.|+.+++.|++|+|||...
T Consensus 44 ~~l~g~~i~l~G~~GsGKSTl~ 65 (250)
T 3nwj_A 44 PYLNGRSMYLVGMMGSGKTTVG 65 (250)
T ss_dssp HHHTTCCEEEECSTTSCHHHHH
T ss_pred hhcCCCEEEEECCCCCCHHHHH
Confidence 3345889999999999999764
No 411
>3e4c_A Caspase-1; zymogen, inflammasome, ICE, IL-1B, innate immunity, apoptosis, hydrolase, protease protease; 2.05A {Homo sapiens}
Probab=54.14 E-value=27 Score=32.47 Aligned_cols=47 Identities=11% Similarity=0.280 Sum_probs=41.4
Q ss_pred CeEEEEECc-----------cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 355 NQVVIFVKS-----------VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 355 ~~~IIF~~s-----------~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
+-+||++|. ...++.|++.|++.|+.|. .+.+++.++-.+++++|.+
T Consensus 61 r~aLII~N~~f~~l~~R~G~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 118 (302)
T 3e4c_A 61 RLALIICNEEFDSIPRRTGAEVDITGMTMLLQNLGYSVD-VKKNLTASDMTTELEAFAH 118 (302)
T ss_dssp CEEEEEECCSCSSSCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHT
T ss_pred cEEEEEECcCCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHh
Confidence 458999998 5789999999999999976 6678999999999999975
No 412
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=53.82 E-value=6.5 Score=42.06 Aligned_cols=41 Identities=27% Similarity=0.381 Sum_probs=37.8
Q ss_pred eeEeeccccCCcccccceeEeeccCCCCchhhhhhhccccc
Q psy1548 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGR 141 (448)
Q Consensus 101 ~~~~~~~~~~~~d~~~~~~v~~~~~p~~~~~yQ~~~~~~~~ 141 (448)
++++|.+.|.|+|.+....|+.|+.|.....+.|..||+.|
T Consensus 628 ~LlSt~agg~GlNL~~a~~VI~~D~~wnp~~~~Qa~gR~~R 668 (800)
T 3mwy_W 628 FLLSTRAGGLGINLMTADTVVIFDSDWNPQADLQAMARAHR 668 (800)
T ss_dssp EEEEHHHHTTTCCCTTCCEEEESSCCSCSHHHHHHHTTTSC
T ss_pred EEEecccccCCCCccccceEEEecCCCChhhHHHHHHHHHh
Confidence 88999999999999999999999999888777888888877
No 413
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=53.80 E-value=7.1 Score=33.13 Aligned_cols=16 Identities=31% Similarity=0.652 Sum_probs=13.3
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+.+.||+|+|||...
T Consensus 2 ~i~l~G~nGsGKTTLl 17 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLV 17 (178)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999653
No 414
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=53.70 E-value=5.8 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.340 Sum_probs=15.1
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.|+.|||||...
T Consensus 20 ~~~I~l~G~~GsGKST~a 37 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQA 37 (201)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 415
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=53.49 E-value=5.4 Score=33.68 Aligned_cols=16 Identities=25% Similarity=0.393 Sum_probs=13.6
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.|+.|+|||...
T Consensus 3 ~I~i~G~~GsGKsT~~ 18 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVL 18 (194)
T ss_dssp EEEEEECTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999654
No 416
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=53.34 E-value=3.6 Score=36.10 Aligned_cols=25 Identities=16% Similarity=0.131 Sum_probs=20.5
Q ss_pred cceeeeeCcceeeeccCCChhHHHH
Q psy1548 142 FGTKAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 142 ~~~~~~~g~~vli~apTGsGKT~~~ 166 (448)
++..+..|.-+.+.||+|+|||...
T Consensus 15 ~l~~i~~Ge~~~liG~nGsGKSTLl 39 (208)
T 3b85_A 15 YVDAIDTNTIVFGLGPAGSGKTYLA 39 (208)
T ss_dssp HHHHHHHCSEEEEECCTTSSTTHHH
T ss_pred HHHhccCCCEEEEECCCCCCHHHHH
Confidence 5556667888999999999999654
No 417
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=53.29 E-value=5.5 Score=33.73 Aligned_cols=19 Identities=26% Similarity=0.399 Sum_probs=15.8
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+++.|+.|+|||...
T Consensus 12 ~~~~i~l~G~~GsGKsT~~ 30 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIA 30 (186)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 3667899999999999764
No 418
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=52.88 E-value=6 Score=34.09 Aligned_cols=20 Identities=20% Similarity=0.130 Sum_probs=16.7
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..|+-+++.|+.|||||...
T Consensus 8 ~~~~~I~l~G~~GsGKST~~ 27 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQS 27 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHH
Confidence 34677999999999999764
No 419
>3tg1_B Dual specificity protein phosphatase 10; kinase/rhodanese-like domain, docking interaction, transfera hydrolase complex; 2.71A {Homo sapiens}
Probab=52.76 E-value=8.8 Score=31.74 Aligned_cols=36 Identities=6% Similarity=0.211 Sum_probs=30.8
Q ss_pred CCeEEEEECcc---------HHHHHHHHHHHhCCCcEEEEeCCCC
Q psy1548 354 FNQVVIFVKSV---------TRCIALSTLLSEQNFPAVSIHRGMT 389 (448)
Q Consensus 354 ~~~~IIF~~s~---------~~a~~l~~~L~~~g~~~~~lh~~~~ 389 (448)
..++|+||.+- ..+..++..|.+.|+++..+.||+.
T Consensus 93 ~~~IVvyc~~g~~~~~~~~~~~s~~a~~~L~~~G~~v~~L~GG~~ 137 (158)
T 3tg1_B 93 SKEIIVYDENTNEPSRVMPSQPLHIVLESLKREGKEPLVLKGGLS 137 (158)
T ss_dssp TSCEEEECSCCSCTTSCCSSSHHHHHHHHHHTTTCCEEEETTHHH
T ss_pred CCeEEEEECCCCcccccCcchHHHHHHHHHHhCCCcEEEeCCcHH
Confidence 56899999987 3588899999999999999999953
No 420
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=52.75 E-value=12 Score=36.38 Aligned_cols=43 Identities=9% Similarity=-0.089 Sum_probs=26.7
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhcc---CCCeEEEEeec
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT---DSNVYVLVMCH 188 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~---~~~~~~lil~P 188 (448)
+..|.-+.+.+|+|+|||.....-++...... ..+..++++.-
T Consensus 175 I~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~ 220 (400)
T 3lda_A 175 VETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDT 220 (400)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEES
T ss_pred cCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeC
Confidence 34467889999999999966543333333221 12346777764
No 421
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=52.71 E-value=6.8 Score=38.76 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=14.8
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
.++++.||+|+|||..+
T Consensus 51 ~~vLL~GppGtGKTtlA 67 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLA 67 (447)
T ss_dssp CEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCcHHHHH
Confidence 47999999999999764
No 422
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=52.64 E-value=6.3 Score=35.22 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=16.7
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 28 i~~Ge~~~i~G~nGsGKSTL 47 (237)
T 2cbz_A 28 IPEGALVAVVGQVGCGKSSL 47 (237)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34578899999999999964
No 423
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=52.61 E-value=5.7 Score=39.55 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.7
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
..++++.||+|+|||...
T Consensus 201 ~~~~LL~G~pG~GKT~la 218 (468)
T 3pxg_A 201 KNNPVLIGEPGVGKTAIA 218 (468)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999764
No 424
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=52.52 E-value=7.8 Score=33.82 Aligned_cols=17 Identities=29% Similarity=0.305 Sum_probs=14.3
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
..+.+.||+|||||...
T Consensus 6 ~~i~i~G~~GsGKSTl~ 22 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLC 22 (227)
T ss_dssp CEEEEECCTTSSHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 45789999999999764
No 425
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=52.50 E-value=7 Score=39.40 Aligned_cols=42 Identities=14% Similarity=0.146 Sum_probs=25.2
Q ss_pred CeeEEEecchhHHHhh-hhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 256 LLKHFILDECDKMLEQ-LEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 256 ~i~~lViDEah~l~~~-~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
.-.+++|||+|.+... .+....+..++.. ....+|+.+++..
T Consensus 148 ~~~vliIDEid~l~~~~~~~l~~L~~~l~~--~~~~iIli~~~~~ 190 (516)
T 1sxj_A 148 KHFVIIMDEVDGMSGGDRGGVGQLAQFCRK--TSTPLILICNERN 190 (516)
T ss_dssp TSEEEEECSGGGCCTTSTTHHHHHHHHHHH--CSSCEEEEESCTT
T ss_pred CCeEEEEECCCccchhhHHHHHHHHHHHHh--cCCCEEEEEcCCC
Confidence 4468999999988653 1223444444444 2445777777643
No 426
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=52.36 E-value=5.9 Score=39.12 Aligned_cols=18 Identities=33% Similarity=0.503 Sum_probs=15.6
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
.+++++.||+|+|||..+
T Consensus 50 ~~~iLl~GppGtGKT~la 67 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIA 67 (444)
T ss_dssp CCCEEEECCTTSSHHHHH
T ss_pred CceEEEEcCCCCCHHHHH
Confidence 468999999999999764
No 427
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=52.29 E-value=6 Score=35.00 Aligned_cols=18 Identities=22% Similarity=0.326 Sum_probs=15.5
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.|+.|||||...
T Consensus 16 ~~~I~l~G~~GsGKsT~a 33 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQA 33 (233)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CeEEEEECCCCCCHHHHH
Confidence 467999999999999764
No 428
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=52.25 E-value=5.8 Score=33.45 Aligned_cols=17 Identities=18% Similarity=0.206 Sum_probs=14.4
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+-+++.|+.|||||...
T Consensus 7 ~~I~l~G~~GsGKsT~~ 23 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQC 23 (194)
T ss_dssp EEEEEEESTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 45889999999999764
No 429
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=52.24 E-value=7.3 Score=34.27 Aligned_cols=20 Identities=25% Similarity=0.365 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||.|+|||..
T Consensus 32 i~~Ge~~~iiG~NGsGKSTL 51 (214)
T 1sgw_A 32 IEKGNVVNFHGPNGIGKTTL 51 (214)
T ss_dssp EETTCCEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44578889999999999964
No 430
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.15 E-value=8 Score=32.46 Aligned_cols=16 Identities=19% Similarity=0.131 Sum_probs=13.5
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-.++.+|+|+|||...
T Consensus 28 ~~~i~G~NGsGKStll 43 (182)
T 3kta_A 28 FTAIVGANGSGKSNIG 43 (182)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred cEEEECCCCCCHHHHH
Confidence 5678999999999763
No 431
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=52.03 E-value=25 Score=30.28 Aligned_cols=43 Identities=9% Similarity=0.138 Sum_probs=35.5
Q ss_pred CeEEEEECccHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHH
Q psy1548 355 NQVVIFVKSVTRCIALSTLLSEQ-----NFPAVSIHRGMTQEERLKKY 397 (448)
Q Consensus 355 ~~~IIF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~eR~~~l 397 (448)
.++||.|+++.-+..+++.+++. +..+..++|+.+..++...+
T Consensus 83 ~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~ 130 (220)
T 1t6n_A 83 VSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 130 (220)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHTTTSTTCCEEEESCCSCHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHHHHhhCCCceEEEEeCCCChHHHHHHH
Confidence 48999999999999988887764 78899999999887665544
No 432
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=51.92 E-value=11 Score=36.59 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=18.3
Q ss_pred eeeeCcceeeeccCCChhHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~ 166 (448)
.+-.|...+|.++.|+|||...
T Consensus 171 PigrGQR~lIfg~~g~GKT~Ll 192 (427)
T 3l0o_A 171 PIGKGQRGMIVAPPKAGKTTIL 192 (427)
T ss_dssp CCBTTCEEEEEECTTCCHHHHH
T ss_pred cccCCceEEEecCCCCChhHHH
Confidence 3456899999999999999764
No 433
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=51.87 E-value=6.3 Score=33.99 Aligned_cols=19 Identities=21% Similarity=0.193 Sum_probs=16.1
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+++.|+.|||||...
T Consensus 8 ~~~~I~l~G~~GsGKsT~~ 26 (215)
T 1nn5_A 8 RGALIVLEGVDRAGKSTQS 26 (215)
T ss_dssp CCCEEEEEESTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 4677899999999999764
No 434
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=51.68 E-value=6.3 Score=32.53 Aligned_cols=16 Identities=25% Similarity=0.061 Sum_probs=13.6
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVG 17 (168)
T ss_dssp EEEEESCTTSCHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4789999999999764
No 435
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=51.55 E-value=10 Score=35.79 Aligned_cols=23 Identities=17% Similarity=0.192 Sum_probs=18.0
Q ss_pred eeeeCcceeeeccCCChhHHHHH
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFV 167 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~ 167 (448)
.+..|.-+++.+|+|+|||....
T Consensus 119 Gi~~gsviLI~GpPGsGKTtLAl 141 (331)
T 2vhj_A 119 HRYASGMVIVTGKGNSGKTPLVH 141 (331)
T ss_dssp EEEESEEEEEECSCSSSHHHHHH
T ss_pred CCCCCcEEEEEcCCCCCHHHHHH
Confidence 44556778999999999996543
No 436
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=51.51 E-value=11 Score=34.99 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.8
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|+|||...
T Consensus 99 ~g~vi~lvG~nGsGKTTll 117 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSL 117 (302)
T ss_dssp SCEEEEEECCTTSCHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHH
Confidence 4677889999999999764
No 437
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=51.49 E-value=8.5 Score=33.07 Aligned_cols=42 Identities=14% Similarity=0.223 Sum_probs=27.2
Q ss_pred CCCeeEEEecchhHH--HhhhhhHHHHHHHHHhCCCCCeEEEEeccCC
Q psy1548 254 LSLLKHFILDECDKM--LEQLEMRRDVQEIFRSSPHTKQVMMFSATLS 299 (448)
Q Consensus 254 ~~~i~~lViDEah~l--~~~~~~~~~~~~i~~~l~~~~q~i~~SAT~~ 299 (448)
..+.+++++||+..+ .+. .+...+..++... ..+++-++|++
T Consensus 103 ~~~~dvlilDE~g~~~~~~~-~~~~~l~~~l~~~---~~~ilgti~vs 146 (189)
T 2i3b_A 103 GPGQRVCVIDEIGKMELFSQ-LFIQAVRQTLSTP---GTIILGTIPVP 146 (189)
T ss_dssp SSCCCCEEECCCSTTTTTCS-HHHHHHHHHHHCS---SCCEEEECCCC
T ss_pred ccCCCEEEEeCCCccccccH-HHHHHHHHHHhCC---CcEEEEEeecC
Confidence 456789999998666 333 5777777776632 23555466764
No 438
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=51.47 E-value=7.4 Score=35.05 Aligned_cols=20 Identities=30% Similarity=0.317 Sum_probs=16.9
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 32 i~~Ge~~~i~G~nGsGKSTL 51 (247)
T 2ff7_A 32 IKQGEVIGIVGRSGSGKSTL 51 (247)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44588899999999999965
No 439
>3od5_A Caspase-6; caspase domain, apoptotic protease, hydrolase-hydrolase INHI complex; 1.60A {Homo sapiens} SCOP: c.17.1.0 PDB: 3k7e_A 3s70_A 3v6m_A 3v6l_A 3nr2_A 4fxo_A 2wdp_A 3nkf_A 3s8e_A 4ejf_A 3qnw_A* 3p4u_A* 3p45_B 3qnw_B* 3p4u_B*
Probab=51.46 E-value=46 Score=30.41 Aligned_cols=49 Identities=20% Similarity=0.198 Sum_probs=41.9
Q ss_pred CCeEEEEECcc--------------HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 354 FNQVVIFVKSV--------------TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 354 ~~~~IIF~~s~--------------~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
.+-+|||+|.. ..++.|.+.|++.|+.|. .+.+++.++-.+++++|.+.
T Consensus 21 rg~aLIInn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 83 (278)
T 3od5_A 21 RGIALIFNHERFFWHLTLPERRGTCADRDNLTRRFSDLGFEVK-CFNDLKAEELLLKIHEVSTV 83 (278)
T ss_dssp CCEEEEEECCCCCGGGCCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHS
T ss_pred cCEEEEEeccccCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 45689998853 679999999999999976 56799999999999999775
No 440
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=51.44 E-value=7.4 Score=34.54 Aligned_cols=20 Identities=25% Similarity=0.356 Sum_probs=16.9
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 31 i~~Ge~~~i~G~nGsGKSTL 50 (229)
T 2pze_A 31 IERGQLLAVAGSTGAGKTSL 50 (229)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44588899999999999964
No 441
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=51.40 E-value=5 Score=33.71 Aligned_cols=19 Identities=26% Similarity=0.167 Sum_probs=11.3
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+.-+++.|+.|||||...
T Consensus 4 ~~~~I~l~G~~GsGKST~a 22 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTA 22 (183)
T ss_dssp -CCEEEEECCC----CHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999764
No 442
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=51.28 E-value=6.3 Score=33.83 Aligned_cols=16 Identities=31% Similarity=0.335 Sum_probs=13.5
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+.+.|+.|||||...
T Consensus 3 ~i~i~G~~GsGKSTl~ 18 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVA 18 (204)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred EEEEECCCCcCHHHHH
Confidence 4788999999999764
No 443
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=51.17 E-value=5.9 Score=38.03 Aligned_cols=37 Identities=19% Similarity=0.280 Sum_probs=22.5
Q ss_pred CcEEEE---eCCCCHHHHHHHHHHHhcCC-CceEEEEecCh
Q psy1548 379 FPAVSI---HRGMTQEERLKKYQEFKDFH-KGLAITFASDE 415 (448)
Q Consensus 379 ~~~~~l---h~~~~~~eR~~~l~~F~~g~-~g~~I~~~t~~ 415 (448)
-++..+ .+++.+..+..+++.+++-. .|..|.++|-.
T Consensus 304 p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~ 344 (365)
T 3qf7_A 304 LDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHD 344 (365)
T ss_dssp CCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESC
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecc
Confidence 344544 36778888877766665532 45667766653
No 444
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=50.98 E-value=6.1 Score=39.48 Aligned_cols=17 Identities=35% Similarity=0.405 Sum_probs=14.8
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+.+++.||+|+|||..+
T Consensus 50 ~gvLL~GppGtGKT~La 66 (476)
T 2ce7_A 50 KGILLVGPPGTGKTLLA 66 (476)
T ss_dssp SEEEEECCTTSSHHHHH
T ss_pred CeEEEECCCCCCHHHHH
Confidence 45999999999999764
No 445
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=50.89 E-value=6.2 Score=40.12 Aligned_cols=19 Identities=26% Similarity=0.340 Sum_probs=16.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|..+++.||+|+|||..+
T Consensus 107 ~g~~vll~Gp~GtGKTtla 125 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLA 125 (543)
T ss_dssp CSCEEEEESSSSSSHHHHH
T ss_pred CCCEEEEECCCCCCHHHHH
Confidence 5788999999999999764
No 446
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=50.80 E-value=7.6 Score=34.32 Aligned_cols=20 Identities=25% Similarity=0.262 Sum_probs=16.4
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 27 i~~Ge~~~iiG~nGsGKSTL 46 (224)
T 2pcj_A 27 VKKGEFVSIIGASGSGKSTL 46 (224)
T ss_dssp EETTCEEEEEECTTSCHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34577888999999999964
No 447
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=50.79 E-value=5 Score=38.30 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=19.7
Q ss_pred cceeeeeCcc--eeeeccCCChhHHHH
Q psy1548 142 FGTKAVLGMD--ILCQAKSGMGKTAVF 166 (448)
Q Consensus 142 ~~~~~~~g~~--vli~apTGsGKT~~~ 166 (448)
.+..++.|.| ++..|+||||||.+.
T Consensus 76 lv~~~l~G~n~tifAYGqTGSGKTyTM 102 (347)
T 1f9v_A 76 LVQSSLDGYNVCIFAYGQTGSGKTFTM 102 (347)
T ss_dssp HHGGGGGTCCEEEEEECCTTSSHHHHH
T ss_pred HHHHhcCCceeEEEEECCCCCCCcEec
Confidence 5566778876 667899999999875
No 448
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=50.67 E-value=14 Score=34.43 Aligned_cols=21 Identities=14% Similarity=0.102 Sum_probs=16.5
Q ss_pred eeeCcceeeeccCCChhHHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~ 166 (448)
...|.-+.|.||+|||||...
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~ 107 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTA 107 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHH
Confidence 345667889999999999654
No 449
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=50.60 E-value=7.7 Score=35.62 Aligned_cols=20 Identities=20% Similarity=0.247 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 31 i~~Ge~~~iiGpnGsGKSTL 50 (275)
T 3gfo_A 31 IKRGEVTAILGGNGVGKSTL 50 (275)
T ss_dssp EETTSEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578889999999999964
No 450
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=50.19 E-value=8.6 Score=35.89 Aligned_cols=20 Identities=10% Similarity=0.006 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 123 i~~Ge~vaIvGpsGsGKSTL 142 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSML 142 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHH
T ss_pred ecCCCEEEEECCCCCcHHHH
Confidence 33578899999999999965
No 451
>1urh_A 3-mercaptopyruvate sulfurtransferase; rhodanese; 2.8A {Escherichia coli} SCOP: c.46.1.2 c.46.1.2
Probab=49.97 E-value=15 Score=33.41 Aligned_cols=38 Identities=5% Similarity=0.038 Sum_probs=31.3
Q ss_pred CCCeEEEEECccHH-HHHHHHHHHhCCC-cEEEEeCCCCH
Q psy1548 353 EFNQVVIFVKSVTR-CIALSTLLSEQNF-PAVSIHRGMTQ 390 (448)
Q Consensus 353 ~~~~~IIF~~s~~~-a~~l~~~L~~~g~-~~~~lh~~~~~ 390 (448)
...++||||.+-.. +..++..|+..|+ ++..+.||+..
T Consensus 85 ~~~~ivvyc~~g~~~a~~a~~~L~~~G~~~v~~l~GG~~~ 124 (280)
T 1urh_A 85 QDKHLIVYDEGNLFSAPRAWWMLRTFGVEKVSILGGGLAG 124 (280)
T ss_dssp TTSEEEEECSSSCSSHHHHHHHHHHTTCSCEEEETTHHHH
T ss_pred CCCeEEEECCCCCccHHHHHHHHHHcCCCCEEEecCCHHH
Confidence 45689999998666 8889999999999 68899998654
No 452
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=49.96 E-value=50 Score=30.04 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=40.9
Q ss_pred CeEEEEECc-------------cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 355 NQVVIFVKS-------------VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 355 ~~~IIF~~s-------------~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
+-+|||.|. ...++.|++.|++.|+.|. .+.+++.++-.+++++|.+.
T Consensus 33 g~aLIInn~~f~~~~l~~R~g~~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~~~~~ 93 (272)
T 1m72_A 33 GMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 93 (272)
T ss_dssp EEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred CEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCcCHHHHHHHHHHHHHh
Confidence 457777764 6789999999999999976 66789999999999999875
No 453
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=49.89 E-value=6.6 Score=33.80 Aligned_cols=16 Identities=25% Similarity=0.208 Sum_probs=13.3
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+.+.||.|||||...
T Consensus 4 ~i~l~G~~GsGKST~~ 19 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIA 19 (206)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4678999999999764
No 454
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=49.86 E-value=6.7 Score=33.65 Aligned_cols=17 Identities=24% Similarity=0.253 Sum_probs=14.2
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
+-+++.|+.|||||...
T Consensus 16 ~~I~l~G~~GsGKsT~~ 32 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQC 32 (203)
T ss_dssp EEEEEECSTTSSHHHHH
T ss_pred cEEEEECCCCCCHHHHH
Confidence 35789999999999764
No 455
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=49.84 E-value=28 Score=29.53 Aligned_cols=56 Identities=9% Similarity=0.163 Sum_probs=39.9
Q ss_pred CCeEEEEECccHHHHHHHHHHHhC-----CCcEEEEeCCCCHHHHHHHHHHHhcCCCceEEEEecCh
Q psy1548 354 FNQVVIFVKSVTRCIALSTLLSEQ-----NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDE 415 (448)
Q Consensus 354 ~~~~IIF~~s~~~a~~l~~~L~~~-----g~~~~~lh~~~~~~eR~~~l~~F~~g~~g~~I~~~t~~ 415 (448)
..++||.|+++.-+..+++.+++. +..+..++|+.+..+....+ . .+..|.++|.+
T Consensus 71 ~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---~---~~~~i~v~T~~ 131 (206)
T 1vec_A 71 NIQAMVIVPTRELALQVSQICIQVSKHMGGAKVMATTGGTNLRDDIMRL---D---DTVHVVIATPG 131 (206)
T ss_dssp SCCEEEECSCHHHHHHHHHHHHHHTTTSSSCCEEEECSSSCHHHHHHHT---T---SCCSEEEECHH
T ss_pred CeeEEEEeCcHHHHHHHHHHHHHHHhhcCCceEEEEeCCccHHHHHHhc---C---CCCCEEEeCHH
Confidence 457999999999999988887653 67899999998876543322 1 23456666654
No 456
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=49.43 E-value=7.3 Score=34.02 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=15.0
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+..+++.|+.|||||...
T Consensus 5 ~~~I~l~G~~GsGKsT~a 22 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQC 22 (217)
T ss_dssp CCEEEEEECTTSSHHHHH
T ss_pred ceEEEEECCCCCCHHHHH
Confidence 456899999999999764
No 457
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=49.41 E-value=7 Score=35.03 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=16.7
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 25 i~~Ge~~~i~G~nGsGKSTL 44 (243)
T 1mv5_A 25 AQPNSIIAFAGPSGGGKSTI 44 (243)
T ss_dssp ECTTEEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578899999999999964
No 458
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=49.38 E-value=7.6 Score=35.27 Aligned_cols=20 Identities=20% Similarity=0.315 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 43 i~~Ge~~~i~G~nGsGKSTL 62 (260)
T 2ghi_A 43 IPSGTTCALVGHTGSGKSTI 62 (260)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34588899999999999965
No 459
>2dko_A Caspase-3; low barrier hydrogen bond, caspase, drug design, radiation D tetrahedral intermediate, protease; 1.06A {Homo sapiens} PDB: 1nme_A 2h5i_A 2h5j_A 2h65_A 2xyg_A* 2xyh_A 2xyp_A* 2xzd_A 2xzt_A 2y0b_A 3edq_A 1gfw_A 1re1_A* 1pau_A* 1rhk_A* 1rhm_A* 1rhq_A* 1rhr_A* 1rhu_A* 1rhj_A* ...
Probab=49.26 E-value=28 Score=28.43 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=40.2
Q ss_pred CeEEEEEC--------------ccHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 355 NQVVIFVK--------------SVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 355 ~~~IIF~~--------------s~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+.+|||.| +...++.|.+.|++.|+.|. .|.+++.++-.+.+++|.+..
T Consensus 17 G~alIinn~~F~~~~~l~~R~Gt~~D~~~L~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~d 79 (146)
T 2dko_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKED 79 (146)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHHSC
T ss_pred eEEEEEeccccCCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EeeCCCHHHHHHHHHHHHHhh
Confidence 46777776 34578999999999999966 566899999999999998754
No 460
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=49.20 E-value=8.3 Score=34.88 Aligned_cols=20 Identities=25% Similarity=0.278 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 30 i~~Ge~~~liG~nGsGKSTL 49 (257)
T 1g6h_A 30 VNKGDVTLIIGPNGSGKSTL 49 (257)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EeCCCEEEEECCCCCCHHHH
Confidence 44578889999999999964
No 461
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=49.18 E-value=1.2e+02 Score=25.56 Aligned_cols=60 Identities=5% Similarity=-0.155 Sum_probs=15.0
Q ss_pred ceeeeeCcceeeeccCCChhHHHHHHHHHHhhhc----------cCCCeEEEEeeccHHHHHHHHHHHHH
Q psy1548 143 GTKAVLGMDILCQAKSGMGKTAVFVLATLQQLET----------TDSNVYVLVMCHTRELAFQISKEYER 202 (448)
Q Consensus 143 ~~~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~----------~~~~~~~lil~Pt~~L~~q~~~~~~~ 202 (448)
++..+.|..+-+.+..|-|=|+.+.+|+...-.. ...+.++||+-........+...+..
T Consensus 14 ~~~~~hgG~i~v~S~~g~Gs~f~~~lP~~~~~~~~~~~~~~~~~~~~~~~ILiVdDd~~~~~~l~~~L~~ 83 (206)
T 3mm4_A 14 VPRGSHMASTDSESETRVKSVRTGRKPIGNPEDEQETSKPSDDEFLRGKRVLVVDDNFISRKVATGKLKK 83 (206)
T ss_dssp CC---------------------------------------CTTTTTTCEEEEECSCHHHHHHHHHHHHH
T ss_pred ccccccCCceeeeccCCCcceeeeccCCCCCcccccccCCCcccccCCCEEEEEeCCHHHHHHHHHHHHH
Confidence 5566778889999999999999999997432211 11234677776666655555544544
No 462
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=49.16 E-value=8.4 Score=34.44 Aligned_cols=20 Identities=25% Similarity=0.270 Sum_probs=16.7
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 29 i~~Ge~~~l~G~nGsGKSTL 48 (240)
T 1ji0_A 29 VPRGQIVTLIGANGAGKTTT 48 (240)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 34578889999999999964
No 463
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=49.08 E-value=8.3 Score=35.15 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 34 i~~Ge~~~liG~nGsGKSTL 53 (266)
T 4g1u_C 34 IASGEMVAIIGPNGAGKSTL 53 (266)
T ss_dssp EETTCEEEEECCTTSCHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34578889999999999964
No 464
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=48.89 E-value=7.4 Score=34.69 Aligned_cols=18 Identities=22% Similarity=0.257 Sum_probs=15.3
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+.+.||.|||||...
T Consensus 27 ~~~i~l~G~~GsGKSTl~ 44 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVC 44 (246)
T ss_dssp CCEEEEECCTTSSHHHHH
T ss_pred CcEEEEECCCCCCHHHHH
Confidence 567899999999999653
No 465
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=48.73 E-value=9.2 Score=34.92 Aligned_cols=17 Identities=24% Similarity=0.186 Sum_probs=14.7
Q ss_pred ceeeeccCCChhHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFV 167 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~ 167 (448)
.+++.||.|+|||..+.
T Consensus 106 ~~~l~GppgtGKt~~a~ 122 (267)
T 1u0j_A 106 TIWLFGPATTGKTNIAE 122 (267)
T ss_dssp EEEEECSTTSSHHHHHH
T ss_pred EEEEECCCCCCHHHHHH
Confidence 59999999999997654
No 466
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=48.66 E-value=5.3 Score=35.99 Aligned_cols=19 Identities=37% Similarity=0.536 Sum_probs=15.6
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.|++|||||...
T Consensus 31 ~~~~i~l~G~~GsGKSTla 49 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIH 49 (253)
T ss_dssp SCEEEEEESCGGGTTHHHH
T ss_pred CCeEEEEECCCCCCHHHHH
Confidence 3567899999999999754
No 467
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=48.54 E-value=88 Score=30.50 Aligned_cols=44 Identities=25% Similarity=0.185 Sum_probs=24.8
Q ss_pred cceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEee--ccHHHHHH
Q psy1548 150 MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMC--HTRELAFQ 195 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~--Pt~~L~~q 195 (448)
+.+++.+++|+|||....--+. .+... .+.+++++. |.+..+.+
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~-~l~~~-~G~kVllvd~D~~r~~a~~ 146 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGK-FLREK-HKKKVLVVSADVYRPAAIK 146 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHH-HHHHT-SCCCEEEEECCCSSTTHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-HHHHh-cCCeEEEEecCCCCccHHH
Confidence 4677889999999976543332 22222 133566655 44444433
No 468
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=48.39 E-value=9.7 Score=34.20 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=15.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|||||...
T Consensus 26 ~g~~I~I~G~~GsGKSTl~ 44 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLC 44 (252)
T ss_dssp TSCEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3567889999999999764
No 469
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=48.35 E-value=18 Score=32.04 Aligned_cols=20 Identities=30% Similarity=0.479 Sum_probs=15.9
Q ss_pred ceeeeccCCChhHHHHHHHH
Q psy1548 151 DILCQAKSGMGKTAVFVLAT 170 (448)
Q Consensus 151 ~vli~apTGsGKT~~~~l~~ 170 (448)
++++.++.|.|||...+--+
T Consensus 8 ~I~~~~kgGvGKTt~a~~la 27 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAA 27 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHH
Confidence 68999999999997754333
No 470
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=48.32 E-value=7.1 Score=35.30 Aligned_cols=18 Identities=28% Similarity=0.322 Sum_probs=14.9
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
+.-+++.|+.|||||...
T Consensus 4 ~~lIvl~G~pGSGKSTla 21 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFS 21 (260)
T ss_dssp CEEEEEECCTTSSHHHHH
T ss_pred CEEEEEEcCCCCCHHHHH
Confidence 346889999999999764
No 471
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=48.30 E-value=24 Score=33.21 Aligned_cols=54 Identities=13% Similarity=0.086 Sum_probs=44.4
Q ss_pred cchHHHHHHHHHhhC--CCCeEEEEECccHHHHHHHHHHHhCCCcEEEEeCCCCHH
Q psy1548 338 ENEKNKKLFELLDVL--EFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391 (448)
Q Consensus 338 ~~~k~~~L~~ll~~~--~~~~~IIF~~s~~~a~~l~~~L~~~g~~~~~lh~~~~~~ 391 (448)
...|+..|..++... .+.+++||++..+..+-+..++...|++..-+.|.....
T Consensus 107 ~SGKf~~L~~LL~~l~~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~ 162 (328)
T 3hgt_A 107 NSGKFSVLRDLINLVQEYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKS 162 (328)
T ss_dssp TCHHHHHHHHHHHHHTTSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC--
T ss_pred cCccHHHHHHHHHHHHhCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhh
Confidence 456888888887654 456999999999999999999999999999999986553
No 472
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=48.27 E-value=7.5 Score=33.78 Aligned_cols=16 Identities=19% Similarity=0.115 Sum_probs=13.7
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~a 17 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQA 17 (214)
T ss_dssp EEEEEESTTSSHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4789999999999764
No 473
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=48.18 E-value=8.9 Score=34.58 Aligned_cols=20 Identities=20% Similarity=0.268 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 23 i~~Ge~~~liG~NGsGKSTL 42 (249)
T 2qi9_C 23 VRAGEILHLVGPNGAGKSTL 42 (249)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 44578889999999999964
No 474
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=48.15 E-value=7.3 Score=33.19 Aligned_cols=16 Identities=25% Similarity=0.362 Sum_probs=13.4
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
.+++.|+.|+|||...
T Consensus 2 ~I~i~G~~GsGKsT~~ 17 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTIS 17 (205)
T ss_dssp EEEEECCTTSCHHHHH
T ss_pred EEEEECCCccCHHHHH
Confidence 4788999999999754
No 475
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=48.03 E-value=17 Score=36.54 Aligned_cols=40 Identities=18% Similarity=0.203 Sum_probs=0.0
Q ss_pred eeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeec
Q psy1548 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~P 188 (448)
+..|.-+++.+|+|+||| .++..++...... +.+++++++
T Consensus 278 i~~G~i~~i~G~~GsGKS-TLl~~l~g~~~~~--G~~vi~~~~ 317 (525)
T 1tf7_A 278 FFKDSIILATGATGTGKT-LLVSRFVENACAN--KERAILFAY 317 (525)
T ss_dssp EESSCEEEEEECTTSSHH-HHHHHHHHHHHTT--TCCEEEEES
T ss_pred CCCCcEEEEEeCCCCCHH-HHHHHHHHHHHhC--CCCEEEEEE
No 476
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=47.95 E-value=10 Score=32.37 Aligned_cols=20 Identities=20% Similarity=0.408 Sum_probs=16.9
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..|+-+++.+++|+|||..+
T Consensus 14 v~G~gvli~G~SGaGKStla 33 (181)
T 3tqf_A 14 IDKMGVLITGEANIGKSELS 33 (181)
T ss_dssp ETTEEEEEEESSSSSHHHHH
T ss_pred ECCEEEEEEcCCCCCHHHHH
Confidence 35788999999999999654
No 477
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=47.57 E-value=7.6 Score=32.76 Aligned_cols=16 Identities=31% Similarity=0.270 Sum_probs=13.3
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+++.|+.|||||...
T Consensus 2 ~I~l~G~~GsGKsT~~ 17 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQA 17 (195)
T ss_dssp EEEEECSTTSCHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 3678999999999764
No 478
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=47.55 E-value=9.2 Score=34.56 Aligned_cols=20 Identities=20% Similarity=0.278 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 28 i~~Ge~~~l~G~nGsGKSTL 47 (253)
T 2nq2_C 28 LNKGDILAVLGQNGCGKSTL 47 (253)
T ss_dssp EETTCEEEEECCSSSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34578889999999999964
No 479
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=47.46 E-value=10 Score=43.97 Aligned_cols=55 Identities=9% Similarity=0.033 Sum_probs=35.9
Q ss_pred eeeeCcceeeeccCCChhHHHHHHHHHHhhhccCCCeEEEEeeccHHHHHHHHHHHHHhhc
Q psy1548 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205 (448)
Q Consensus 145 ~~~~g~~vli~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 205 (448)
-+-.|+-+.+.+|.|||||...+ +++..... .+..++++.+-.+|-.. .+++++-
T Consensus 1427 G~prg~~iei~g~~~sGkttl~~-~~~a~~~~--~g~~~~~i~~e~~~~~~---~~~~~Gv 1481 (1706)
T 3cmw_A 1427 GLPMGRIVEIYGPESSGKTTLTL-QVIAAAQR--EGKTCAFIDAEHALDPI---YARKLGV 1481 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHH-HHHHHHHH--TTCCEEEECTTSCCCHH---HHHHTTC
T ss_pred CCCCCCEEEEEcCCCCCHHHHHH-HHHHHHHh--cCCeEEEEecCCCCCHH---HHHHcCC
Confidence 34457889999999999997654 44433222 24478888877666544 2566543
No 480
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=47.44 E-value=7.2 Score=37.40 Aligned_cols=15 Identities=27% Similarity=0.649 Sum_probs=0.0
Q ss_pred eeeeccCCChhHHHH
Q psy1548 152 ILCQAKSGMGKTAVF 166 (448)
Q Consensus 152 vli~apTGsGKT~~~ 166 (448)
.++.|+||+|||...
T Consensus 28 ~vi~G~NGaGKT~il 42 (371)
T 3auy_A 28 VAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEECTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
No 481
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=47.33 E-value=7.7 Score=32.87 Aligned_cols=15 Identities=27% Similarity=0.426 Sum_probs=12.9
Q ss_pred eeeeccCCChhHHHH
Q psy1548 152 ILCQAKSGMGKTAVF 166 (448)
Q Consensus 152 vli~apTGsGKT~~~ 166 (448)
+++.|+.|||||...
T Consensus 3 I~l~G~~GsGKsT~~ 17 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQI 17 (197)
T ss_dssp EEEECSTTSSHHHHH
T ss_pred EEEECCCCCCHHHHH
Confidence 678999999999764
No 482
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=47.24 E-value=5.4 Score=38.62 Aligned_cols=25 Identities=24% Similarity=0.387 Sum_probs=19.1
Q ss_pred cceeeeeCcc--eeeeccCCChhHHHH
Q psy1548 142 FGTKAVLGMD--ILCQAKSGMGKTAVF 166 (448)
Q Consensus 142 ~~~~~~~g~~--vli~apTGsGKT~~~ 166 (448)
.+..++.|.| ++..|+||||||.+.
T Consensus 90 lv~~~l~G~N~tifAYGqTGSGKTyTM 116 (388)
T 3bfn_A 90 ILRHLLEGQNASVLAYGPTGAGKTHTM 116 (388)
T ss_dssp GHHHHTTTCCEEEEEESCTTSSHHHHH
T ss_pred HHHHhhcCceeeEeeecCCCCCCCeEe
Confidence 4556677865 667899999999774
No 483
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=47.19 E-value=7.6 Score=34.71 Aligned_cols=19 Identities=16% Similarity=0.080 Sum_probs=15.7
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.+..+++.||.|||||...
T Consensus 28 ~~~~I~l~G~~GsGKsT~a 46 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQS 46 (243)
T ss_dssp CCEEEEEECCTTSSHHHHH
T ss_pred CCcEEEEECCCCCCHHHHH
Confidence 3457899999999999764
No 484
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=47.02 E-value=7.8 Score=33.05 Aligned_cols=17 Identities=29% Similarity=0.294 Sum_probs=14.1
Q ss_pred cceeeeccCCChhHHHH
Q psy1548 150 MDILCQAKSGMGKTAVF 166 (448)
Q Consensus 150 ~~vli~apTGsGKT~~~ 166 (448)
..+.+.+++|||||...
T Consensus 9 ~~I~i~G~~GsGKST~~ 25 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVA 25 (203)
T ss_dssp EEEEEEECTTSCHHHHH
T ss_pred eEEEEECCCCCCHHHHH
Confidence 35789999999999764
No 485
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=46.74 E-value=7.7 Score=41.17 Aligned_cols=18 Identities=28% Similarity=0.381 Sum_probs=15.8
Q ss_pred CcceeeeccCCChhHHHH
Q psy1548 149 GMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 149 g~~vli~apTGsGKT~~~ 166 (448)
..++++.||+|+|||...
T Consensus 201 ~~~vLL~G~pGtGKT~la 218 (758)
T 3pxi_A 201 KNNPVLIGEPGVGKTAIA 218 (758)
T ss_dssp SCEEEEESCTTTTTHHHH
T ss_pred CCCeEEECCCCCCHHHHH
Confidence 468999999999999765
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=46.38 E-value=8.2 Score=36.04 Aligned_cols=20 Identities=25% Similarity=0.444 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 77 i~~Ge~vaivG~sGsGKSTL 96 (306)
T 3nh6_A 77 VMPGQTLALVGPSGAGKSTI 96 (306)
T ss_dssp ECTTCEEEEESSSCHHHHHH
T ss_pred EcCCCEEEEECCCCchHHHH
Confidence 34588899999999999965
No 487
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=46.35 E-value=9 Score=34.80 Aligned_cols=20 Identities=35% Similarity=0.315 Sum_probs=16.3
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 29 i~~Ge~~~liG~nGsGKSTL 48 (262)
T 1b0u_A 29 ARAGDVISIIGSSGSGKSTF 48 (262)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 33577888999999999964
No 488
>2j32_A Caspase-3; Pro-caspase3, thiol protease, hydrolase, hydrolase-hydrolase inhibitor complex; 1.30A {Homo sapiens} PDB: 2j30_A 3h0e_A* 2j33_A 3pd1_A 2j31_A 3pcx_A 1nms_A* 1nmq_A* 3deh_A* 3dei_A* 3dej_A* 3dek_A* 3pd0_A 3itn_A 1qx3_A
Probab=46.34 E-value=55 Score=29.28 Aligned_cols=49 Identities=10% Similarity=0.143 Sum_probs=40.8
Q ss_pred CeEEEEECc--------------cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcCC
Q psy1548 355 NQVVIFVKS--------------VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404 (448)
Q Consensus 355 ~~~IIF~~s--------------~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g~ 404 (448)
+-+||+.|. ...++.|++.|++.|+.|. .+.+++.++-.+++++|.+..
T Consensus 17 g~aLIInn~~f~~~~~l~~r~g~~~D~~~l~~~f~~LgF~V~-~~~dlt~~em~~~l~~~~~~~ 79 (250)
T 2j32_A 17 GLCIIINNKNFHKSTGMTSRSGTDVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKED 79 (250)
T ss_dssp EEEEEEECCCCCGGGTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTSC
T ss_pred cEEEEEechhcCCCCCCcCCCCCHHHHHHHHHHHHHCCCEEE-EEeCCCHHHHHHHHHHHHHhh
Confidence 457787773 3489999999999999976 677899999999999998763
No 489
>2nn3_C Caspase-1; cysteine protease, hydrolase; 3.00A {Spodoptera frugiperda}
Probab=46.32 E-value=68 Score=29.78 Aligned_cols=49 Identities=20% Similarity=0.223 Sum_probs=41.9
Q ss_pred CCeEEEEECc-------------cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 354 FNQVVIFVKS-------------VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 354 ~~~~IIF~~s-------------~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
.+-+|||.|. ...++.|++.|++.|+.|. ++.+++.++-.+++++|.+.
T Consensus 60 rg~aLIInN~~F~~~~l~~R~Gt~~Da~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 121 (310)
T 2nn3_C 60 RGMAIIFNHEHFDIHSLKSRTGTNVDSDNLSKVLKTLGFKVT-VFPNLKSEEINKFIQQTAEM 121 (310)
T ss_dssp CCEEEEEECCCCSSTTCCCCTTHHHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHSS
T ss_pred cCEEEEEechhcCCCCcccCCCCHHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHHh
Confidence 4568888875 6789999999999999975 66789999999999999875
No 490
>2fp3_A Caspase NC; apoptosis, initiator caspase activation, dimerization, active site conformation, hydrolysis/apoptosis complex; 2.50A {Drosophila melanogaster}
Probab=46.16 E-value=39 Score=31.55 Aligned_cols=48 Identities=15% Similarity=0.106 Sum_probs=41.4
Q ss_pred CCeEEEEECcc------------HHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhc
Q psy1548 354 FNQVVIFVKSV------------TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402 (448)
Q Consensus 354 ~~~~IIF~~s~------------~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~ 402 (448)
.+-+|||+|.. ..++.|.+.|++.|+.|. +|.+++.++-.+++++|.+
T Consensus 61 rg~aLIInN~~F~~~~~~R~Gt~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~ 120 (316)
T 2fp3_A 61 RGVLLMVNIMDYPDQNRRRIGAEKDSKSLIHLFQELNFTIF-PYGNVNQDQFFKLLTMVTS 120 (316)
T ss_dssp SEEEEEEECCCCSSTTSCCTTHHHHHHHHHHHHHHTTEEEE-EECSCCHHHHHHHHHHHHT
T ss_pred CcEEEEEeCcccCCCCCCCCCcHHHHHHHHHHHHHCCCEEE-EccCCCHHHHHHHHHHHHH
Confidence 46788888763 789999999999999975 7789999999999999975
No 491
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=46.16 E-value=7.8 Score=32.25 Aligned_cols=19 Identities=21% Similarity=0.314 Sum_probs=15.4
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|.-+.+.+|.|+|||..
T Consensus 31 ~~Ge~v~L~G~nGaGKTTL 49 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTL 49 (158)
T ss_dssp SSCEEEEEECSTTSSHHHH
T ss_pred CCCCEEEEECCCCCCHHHH
Confidence 3466788999999999954
No 492
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=46.11 E-value=9.1 Score=34.98 Aligned_cols=20 Identities=25% Similarity=0.238 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 42 i~~Ge~~~i~G~nGsGKSTL 61 (271)
T 2ixe_A 42 LYPGKVTALVGPNGSGKSTV 61 (271)
T ss_dssp ECTTCEEEEECSTTSSHHHH
T ss_pred ECCCCEEEEECCCCCCHHHH
Confidence 34578889999999999964
No 493
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=45.87 E-value=15 Score=35.04 Aligned_cols=19 Identities=26% Similarity=0.240 Sum_probs=15.9
Q ss_pred eCcceeeeccCCChhHHHH
Q psy1548 148 LGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 148 ~g~~vli~apTGsGKT~~~ 166 (448)
.|.-+.+.||+|+|||...
T Consensus 156 ~g~vi~lvG~nGsGKTTll 174 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSL 174 (359)
T ss_dssp SSEEEEEECCTTSCHHHHH
T ss_pred CCeEEEEEcCCCChHHHHH
Confidence 4677889999999999764
No 494
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=45.81 E-value=7.6 Score=41.59 Aligned_cols=20 Identities=30% Similarity=0.265 Sum_probs=16.8
Q ss_pred eeCcceeeeccCCChhHHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAVF 166 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~~ 166 (448)
..++.+++.||+|+|||..+
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLa 255 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIA 255 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHH
T ss_pred CCCCeEEEECcCCCCHHHHH
Confidence 34678999999999999654
No 495
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=45.80 E-value=9.3 Score=34.78 Aligned_cols=19 Identities=26% Similarity=0.434 Sum_probs=16.1
Q ss_pred eeCcceeeeccCCChhHHH
Q psy1548 147 VLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 147 ~~g~~vli~apTGsGKT~~ 165 (448)
..|.-+.+.||+|+|||..
T Consensus 31 ~~Ge~~~liG~nGsGKSTL 49 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTL 49 (266)
T ss_dssp CTTCEEEEECSTTSSHHHH
T ss_pred cCCCEEEEECCCCCcHHHH
Confidence 3577888999999999964
No 496
>4ehd_A Caspase-3; caspase, apoptosis, allosteric inhibition; 1.58A {Homo sapiens} PDB: 4ehk_A 4ehf_A 4ehn_A 1cp3_A 4ehh_A 4eha_A 4ehl_A 1i3o_A
Probab=45.72 E-value=56 Score=29.81 Aligned_cols=39 Identities=10% Similarity=0.128 Sum_probs=34.6
Q ss_pred cHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC
Q psy1548 364 VTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDF 403 (448)
Q Consensus 364 ~~~a~~l~~~L~~~g~~~~~lh~~~~~~eR~~~l~~F~~g 403 (448)
...++.|.+.|++.|+.|. .+.+++.++-.+.+++|.+.
T Consensus 68 ~~D~~~L~~~f~~LGF~V~-~~~dlt~~em~~~l~~f~~~ 106 (277)
T 4ehd_A 68 DVDAANLRETFRNLKYEVR-NKNDLTREEIVELMRDVSKE 106 (277)
T ss_dssp HHHHHHHHHHHHHTTCEEE-EEESCCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCCCEEE-EecCCCHHHHHHHHHHHHhh
Confidence 3479999999999999975 67789999999999999875
No 497
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=45.71 E-value=6.9 Score=33.08 Aligned_cols=16 Identities=25% Similarity=0.241 Sum_probs=13.0
Q ss_pred ceeeeccCCChhHHHH
Q psy1548 151 DILCQAKSGMGKTAVF 166 (448)
Q Consensus 151 ~vli~apTGsGKT~~~ 166 (448)
-+.+.+++|||||...
T Consensus 4 ~v~IvG~SGsGKSTL~ 19 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLI 19 (171)
T ss_dssp EEEEEESCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHH
Confidence 4668899999999654
No 498
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=45.70 E-value=13 Score=33.42 Aligned_cols=20 Identities=20% Similarity=0.209 Sum_probs=16.8
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 26 i~~Ge~~~l~G~nGsGKSTL 45 (250)
T 2d2e_A 26 VPKGEVHALMGPNGAGKSTL 45 (250)
T ss_dssp EETTCEEEEECSTTSSHHHH
T ss_pred EcCCCEEEEECCCCCCHHHH
Confidence 44578889999999999965
No 499
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=45.58 E-value=9.4 Score=34.57 Aligned_cols=20 Identities=25% Similarity=0.137 Sum_probs=16.4
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 38 i~~Gei~~l~G~NGsGKSTL 57 (256)
T 1vpl_A 38 IEEGEIFGLIGPNGAGKTTT 57 (256)
T ss_dssp ECTTCEEEEECCTTSSHHHH
T ss_pred EcCCcEEEEECCCCCCHHHH
Confidence 33577889999999999964
No 500
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=45.54 E-value=10 Score=34.83 Aligned_cols=20 Identities=25% Similarity=0.318 Sum_probs=16.6
Q ss_pred eeeCcceeeeccCCChhHHH
Q psy1548 146 AVLGMDILCQAKSGMGKTAV 165 (448)
Q Consensus 146 ~~~g~~vli~apTGsGKT~~ 165 (448)
+..|.-+.+.||+|+|||..
T Consensus 44 i~~Ge~~~liG~NGsGKSTL 63 (279)
T 2ihy_A 44 IAKGDKWILYGLNGAGKTTL 63 (279)
T ss_dssp EETTCEEEEECCTTSSHHHH
T ss_pred EcCCCEEEEECCCCCcHHHH
Confidence 34578889999999999964
Done!