Your job contains 1 sequence.
>psy1548
VEESRSSQEKLSCGSGNVFLFFRAFIRFSSSFPHSKMADNDDLLDYEDEENTEQIVADGA
GDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIV
FNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN
VYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP
GRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSK
EIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIF
VKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI
LNNVQDRFDVSISELPDEIDLSTYIEGR
The BLAST search returned 14 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy1548
(448 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0014189 - symbol:Hel25E "Helicase at 25E" species:... 1081 2.1e-143 3
UNIPROTKB|Q5WR10 - symbol:DDX39B "Spliceosome RNA helicas... 1028 9.2e-137 3
UNIPROTKB|Q13838 - symbol:DDX39B "Spliceosome RNA helicas... 1028 1.2e-136 3
UNIPROTKB|Q29024 - symbol:DDX39B "Spliceosome RNA helicas... 1028 1.2e-136 3
MGI|MGI:99240 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box... 1028 1.2e-136 3
RGD|70923 - symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box pol... 1028 1.2e-136 3
UNIPROTKB|Q3T147 - symbol:DDX39B "Spliceosome RNA helicas... 1023 3.9e-136 3
UNIPROTKB|Q5ZHZ0 - symbol:DDX39B "Spliceosome RNA helicas... 1022 5.0e-136 3
UNIPROTKB|E2QY95 - symbol:DDX39A "Uncharacterized protein... 1015 6.4e-134 3
UNIPROTKB|F1SCH3 - symbol:DDX39A "Uncharacterized protein... 1015 6.4e-134 3
UNIPROTKB|Q5E970 - symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) b... 1015 8.2e-134 3
UNIPROTKB|F8VQ10 - symbol:DDX39B "Spliceosome RNA helicas... 1000 1.0e-133 3
ZFIN|ZDB-GENE-040426-2902 - symbol:ddx39ab "DEAD (Asp-Glu... 1012 1.7e-133 3
ZFIN|ZDB-GENE-040426-1259 - symbol:ddx39b "DEAD (Asp-Glu-... 1012 5.7e-133 3
MGI|MGI:1915528 - symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) bo... 1006 7.2e-133 3
RGD|619920 - symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box po... 1005 9.2e-133 3
ZFIN|ZDB-GENE-030131-4275 - symbol:ddx39aa "DEAD (Asp-Glu... 1010 1.9e-132 3
UNIPROTKB|O00148 - symbol:DDX39A "ATP-dependent RNA helic... 1002 1.9e-132 3
WB|WBGene00001840 - symbol:hel-1 species:6239 "Caenorhabd... 917 3.5e-123 3
UNIPROTKB|Q5STU3 - symbol:DDX39B "Spliceosome RNA helicas... 1028 1.4e-118 2
UNIPROTKB|H0Y7G4 - symbol:DDX39B "Spliceosome RNA helicas... 916 1.7e-109 2
UNIPROTKB|K9J6N8 - symbol:DDX39B "Spliceosome RNA helicas... 872 7.3e-105 2
TAIR|locus:2147987 - symbol:UAP56a "homolog of human UAP5... 887 1.4e-99 2
UNIPROTKB|F8VZL8 - symbol:DDX39B "Spliceosome RNA helicas... 838 1.6e-98 2
TAIR|locus:2148027 - symbol:UAP56b "homolog of human UAP5... 604 1.9e-98 3
UNIPROTKB|F6WLT2 - symbol:DDX39B "Spliceosome RNA helicas... 831 8.7e-98 2
UNIPROTKB|A4RBS3 - symbol:SUB2 "ATP-dependent RNA helicas... 857 7.7e-97 2
UNIPROTKB|Q8N5M0 - symbol:DDX39A "ATP-dependent RNA helic... 810 1.6e-94 2
SGD|S000002242 - symbol:SUB2 "Component of the TREX compl... 823 2.1e-92 2
UNIPROTKB|H0Y7X6 - symbol:DDX39B "Spliceosome RNA helicas... 916 6.3e-92 1
DICTYBASE|DDB_G0269932 - symbol:uap56 "ATP-dependent RNA ... 766 9.9e-92 3
UNIPROTKB|B4DP52 - symbol:DDX39B "Spliceosome RNA helicas... 746 1.5e-91 2
POMBASE|SPAC17G6.14c - symbol:uap56 "ATP-dependent RNA he... 866 1.3e-86 1
UNIPROTKB|F6TRA5 - symbol:DDX39B "Spliceosome RNA helicas... 674 3.2e-81 2
UNIPROTKB|B1Q2N1 - symbol:DDX39 "ATP-dependent RNA helica... 682 5.1e-81 2
UNIPROTKB|K7EQN7 - symbol:DDX39A "ATP-dependent RNA helic... 682 5.1e-81 2
GENEDB_PFALCIPARUM|PFB0445c - symbol:PFB0445c "helicase, ... 706 1.4e-80 2
UNIPROTKB|Q9TY94 - symbol:UAP56 "DEAD box helicase, UAP56... 706 1.4e-80 2
UNIPROTKB|F6UN21 - symbol:DDX39B "Spliceosome RNA helicas... 663 4.6e-80 2
UNIPROTKB|F6S4E6 - symbol:DDX39B "Spliceosome RNA helicas... 640 1.2e-77 2
UNIPROTKB|H0Y557 - symbol:DDX39B "Spliceosome RNA helicas... 719 4.8e-71 1
UNIPROTKB|E9PP12 - symbol:DDX39B "Spliceosome RNA helicas... 694 2.1e-68 1
UNIPROTKB|F6UJC5 - symbol:DDX39B "Spliceosome RNA helicas... 684 2.4e-67 1
UNIPROTKB|H0Y800 - symbol:DDX39B "Spliceosome RNA helicas... 679 8.2e-67 1
UNIPROTKB|K7EPJ3 - symbol:DDX39A "ATP-dependent RNA helic... 476 2.6e-59 2
UNIPROTKB|B4DIJ6 - symbol:DDX39B "Spliceosome RNA helicas... 569 3.7e-55 1
UNIPROTKB|H0Y6G9 - symbol:DDX39B "Spliceosome RNA helicas... 562 2.1e-54 1
UNIPROTKB|H0Y4V8 - symbol:DDX39B "Spliceosome RNA helicas... 551 3.0e-53 1
UNIPROTKB|H0Y6N8 - symbol:DDX39B "Spliceosome RNA helicas... 528 8.3e-51 1
UNIPROTKB|F6QYI9 - symbol:DDX39B "Spliceosome RNA helicas... 356 9.8e-48 2
UNIPROTKB|F6V772 - symbol:DDX39B "Spliceosome RNA helicas... 356 9.8e-48 2
UNIPROTKB|H0Y400 - symbol:DDX39B "Spliceosome RNA helicas... 321 7.6e-46 2
UNIPROTKB|F8W0J0 - symbol:DDX39B "Spliceosome RNA helicas... 305 4.1e-45 2
WB|WBGene00002083 - symbol:inf-1 species:6239 "Caenorhabd... 375 9.1e-44 3
CGD|CAL0004095 - symbol:TIF species:5476 "Candida albican... 365 1.2e-40 3
UNIPROTKB|P87206 - symbol:TIF1 "ATP-dependent RNA helicas... 365 1.2e-40 3
ASPGD|ASPL0000037981 - symbol:AN2932 species:162425 "Emer... 355 1.3e-39 3
SGD|S000002319 - symbol:DHH1 "Cytoplasmic DExD/H-box heli... 352 3.5e-39 3
POMBASE|SPAC1006.07 - symbol:SPAC1006.07 "translation ini... 345 7.2e-39 3
FB|FBgn0001942 - symbol:eIF-4a "Eukaryotic initiation fac... 362 1.3e-38 2
UNIPROTKB|Q3SZ65 - symbol:EIF4A2 "Eukaryotic initiation f... 361 2.8e-38 2
UNIPROTKB|E2R3J1 - symbol:EIF4A2 "Uncharacterized protein... 361 2.8e-38 2
UNIPROTKB|Q14240 - symbol:EIF4A2 "Eukaryotic initiation f... 361 2.8e-38 2
UNIPROTKB|A6M930 - symbol:EIF4A2 "Eukaryotic translation ... 361 2.8e-38 2
MGI|MGI:106906 - symbol:Eif4a2 "eukaryotic translation in... 361 2.8e-38 2
RGD|1309225 - symbol:Eif4a2 "eukaryotic translation initi... 361 2.8e-38 2
UNIPROTKB|F8WFX2 - symbol:Eif4a2 "Eukaryotic initiation f... 361 2.8e-38 2
FB|FBgn0037573 - symbol:eIF4AIII "eIF4AIII" species:7227 ... 362 7.3e-38 2
UNIPROTKB|Q8JFP1 - symbol:EIF4A2 "Eukaryotic initiation f... 356 9.3e-38 2
ZFIN|ZDB-GENE-040426-2802 - symbol:eif4a2 "eukaryotic tra... 354 1.5e-37 2
CGD|CAL0006152 - symbol:DHH1 species:5476 "Candida albica... 343 2.8e-37 3
UNIPROTKB|Q5AAW3 - symbol:DHH1 "ATP-dependent RNA helicas... 343 2.8e-37 3
SGD|S000001767 - symbol:TIF1 "Translation initiation fact... 357 5.1e-37 2
SGD|S000003674 - symbol:TIF2 "Translation initiation fact... 357 5.1e-37 2
UNIPROTKB|Q3SZ54 - symbol:EIF4A1 "Eukaryotic initiation f... 357 5.1e-37 2
UNIPROTKB|F1P895 - symbol:EIF4A1 "Uncharacterized protein... 357 5.1e-37 2
UNIPROTKB|J9NU36 - symbol:EIF4A1 "Uncharacterized protein... 357 5.1e-37 2
UNIPROTKB|J9NY67 - symbol:EIF4A1 "Uncharacterized protein... 357 5.1e-37 2
UNIPROTKB|P60842 - symbol:EIF4A1 "Eukaryotic initiation f... 357 5.1e-37 2
UNIPROTKB|A6M928 - symbol:EIF4A1 "Uncharacterized protein... 357 5.1e-37 2
MGI|MGI:95303 - symbol:Eif4a1 "eukaryotic translation ini... 357 5.1e-37 2
UNIPROTKB|Q6P3V8 - symbol:Eif4a1 "Protein Eif4a1" species... 357 5.1e-37 2
GENEDB_PFALCIPARUM|PFC0915w - symbol:PFC0915w "ATP-depend... 331 8.6e-37 3
DICTYBASE|DDB_G0269192 - symbol:tifA "eukaryotic translat... 351 1.7e-36 2
UNIPROTKB|A4QVP2 - symbol:TIF1 "ATP-dependent RNA helicas... 355 2.2e-36 2
TAIR|locus:2127043 - symbol:RH8 "RNAhelicase-like 8" spec... 335 2.2e-36 3
SGD|S000002428 - symbol:FAL1 "Nucleolar protein required ... 390 3.5e-36 1
ZFIN|ZDB-GENE-031030-2 - symbol:eif4a1a "eukaryotic trans... 353 4.4e-36 2
UNIPROTKB|A4R715 - symbol:DHH1 "ATP-dependent RNA helicas... 351 5.2e-36 2
ZFIN|ZDB-GENE-040120-6 - symbol:eif4a1b "eukaryotic trans... 351 5.7e-36 2
POMBASE|SPBC776.09 - symbol:ste13 "ATP-dependent RNA heli... 340 1.2e-35 2
TAIR|locus:2091191 - symbol:EIF4A-III "eukaryotic initiat... 338 1.2e-35 2
TAIR|locus:2030285 - symbol:AT1G72730 species:3702 "Arabi... 338 1.2e-35 2
ASPGD|ASPL0000014018 - symbol:fal1 species:162425 "Emeric... 340 2.4e-35 2
ZFIN|ZDB-GENE-030131-6611 - symbol:wu:fk48d07 "wu:fk48d07... 312 3.3e-35 3
UNIPROTKB|I3LLD5 - symbol:I3LLD5 "Uncharacterized protein... 339 3.9e-35 2
POMBASE|SPAC1F5.10 - symbol:SPAC1F5.10 "ATP-dependent RNA... 332 3.9e-35 2
TAIR|locus:2020078 - symbol:EIF4A-2 "eif4a-2" species:370... 329 2.7e-34 2
DICTYBASE|DDB_G0269146 - symbol:ifdA "eukaryotic translat... 330 1.1e-33 2
GENEDB_PFALCIPARUM|PFD1070w - symbol:PFD1070w "eukaryotic... 317 1.5e-33 2
WARNING: Descriptions of 743 database sequences were not reported due to the
limiting value of parameter V = 100.
>FB|FBgn0014189 [details] [associations]
symbol:Hel25E "Helicase at 25E" species:7227 "Drosophila
melanogaster" [GO:0005634 "nucleus" evidence=IC;NAS;IDA]
[GO:0006338 "chromatin remodeling" evidence=IMP] [GO:0005700
"polytene chromosome" evidence=IDA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS;NAS] [GO:0003724 "RNA helicase
activity" evidence=ISS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISS] [GO:0005681 "spliceosomal complex"
evidence=ISS] [GO:0006406 "mRNA export from nucleus" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0007052 "mitotic
spindle organization" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005875 GO:GO:0007052
EMBL:AE014134 GO:GO:0016607 GO:GO:0005681 GO:GO:0003723
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 GO:GO:0000381 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00660000095549
KO:K12812 EMBL:X79802 EMBL:L06018 EMBL:AY118921 PIR:S51601
RefSeq:NP_723089.1 RefSeq:NP_723090.1 RefSeq:NP_723091.1
UniGene:Dm.3332 ProteinModelPortal:Q27268 SMR:Q27268 DIP:DIP-20199N
IntAct:Q27268 MINT:MINT-304772 STRING:Q27268 PaxDb:Q27268
PRIDE:Q27268 EnsemblMetazoa:FBtr0079123 EnsemblMetazoa:FBtr0079124
EnsemblMetazoa:FBtr0079125 GeneID:33781 KEGG:dme:Dmel_CG7269
CTD:33781 FlyBase:FBgn0014189 InParanoid:Q27268 OMA:ENRFLEE
OrthoDB:EOG47WM45 PhylomeDB:Q27268 GenomeRNAi:33781 NextBio:785218
Bgee:Q27268 GermOnline:CG7269 Uniprot:Q27268
Length = 424
Score = 1081 (385.6 bits), Expect = 2.1e-143, Sum P(3) = 2.1e-143
Identities = 211/266 (79%), Positives = 230/266 (86%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV-YVLVMCHTRELAFQISKEYERF 203
+AVLGMDILCQAKSGMGKTAVFVLATLQQLE +D+N +VLVMCHTRELAFQISKEYERF
Sbjct: 74 QAVLGMDILCQAKSGMGKTAVFVLATLQQLEPSDNNTCHVLVMCHTRELAFQISKEYERF 133
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
SKYM +KV VFFGG+ IQKDEE LK+ P IVVGTPGRILAL+RNKKLNL LLKHF+LD
Sbjct: 134 SKYMPTVKVAVFFGGMAIQKDEETLKSGTPHIVVGTPGRILALIRNKKLNLKLLKHFVLD 193
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
ECDKMLEQL+MRRDVQEIFRS+PH KQVMMFSATLSK+IRPVCKKFM DPMEVYVDDEAK
Sbjct: 194 ECDKMLEQLDMRRDVQEIFRSTPHGKQVMMFSATLSKDIRPVCKKFMQDPMEVYVDDEAK 253
Query: 324 LTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTLHGLQQHYV DVLEFNQVVIFVKSV RC+ALS LL+EQNFPA+
Sbjct: 254 LTLHGLQQHYVNLKENEKNKKLFELLDVLEFNQVVIFVKSVQRCVALSQLLTEQNFPAIG 313
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAI 409
IHRGMTQEERL +YQ+FKDF K + +
Sbjct: 314 IHRGMTQEERLNRYQQFKDFQKRILV 339
Score = 240 (89.5 bits), Expect = 4.6e-48, Sum P(3) = 4.6e-48
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 336 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 383
Score = 202 (76.2 bits), Expect = 2.1e-143, Sum P(3) = 2.1e-143
Identities = 40/44 (90%), Positives = 42/44 (95%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
KGLAITF SDENDAKILN VQDRFDV+ISELP+EIDLSTYIEGR
Sbjct: 381 KGLAITFVSDENDAKILNEVQDRFDVNISELPEEIDLSTYIEGR 424
Score = 155 (59.6 bits), Expect = 2.1e-143, Sum P(3) = 2.1e-143
Identities = 30/34 (88%), Positives = 32/34 (94%)
Query: 65 AKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
A +K+VKG YVSIHSSGFRDFLLKPEILRAIVDC
Sbjct: 26 APKKDVKGTYVSIHSSGFRDFLLKPEILRAIVDC 59
>UNIPROTKB|Q5WR10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784
"intronless viral mRNA export from host nucleus" evidence=IEA]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA]
[GO:0030621 "U4 snRNA binding" evidence=IEA] [GO:0017070 "U6 snRNA
binding" evidence=IEA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IEA] [GO:0005688 "U6 snRNP" evidence=IEA]
[GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0000346 "transcription export complex"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:AY423389
RefSeq:NP_001014399.1 UniGene:Cfa.10131 ProteinModelPortal:Q5WR10
SMR:Q5WR10 Ensembl:ENSCAFT00000036511 GeneID:474839 KEGG:cfa:474839
InParanoid:Q5WR10 NextBio:20850784 Uniprot:Q5WR10
Length = 428
Score = 1028 (366.9 bits), Expect = 9.2e-137, Sum P(3) = 9.2e-137
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.2e-46, Sum P(3) = 2.2e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 9.2e-137, Sum P(3) = 9.2e-137
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 161 (61.7 bits), Expect = 9.2e-137, Sum P(3) = 9.2e-137
Identities = 31/45 (68%), Positives = 36/45 (80%)
Query: 54 QIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+ A G G +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 19 ETAAGGDGSEAPAKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|Q13838 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0006406 "mRNA export from nucleus"
evidence=IGI;IDA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0000346 "transcription export complex"
evidence=IDA] [GO:0046784 "intronless viral mRNA export from host
nucleus" evidence=IDA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=IDA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0008380 "RNA splicing" evidence=IDA]
[GO:0000245 "spliceosomal complex assembly" evidence=IDA]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0043008
"ATP-dependent protein binding" evidence=IDA] [GO:0005687 "U4
snRNP" evidence=IDA] [GO:0005688 "U6 snRNP" evidence=IDA]
[GO:0030621 "U4 snRNA binding" evidence=IDA] [GO:0017070 "U6 snRNA
binding" evidence=IDA] [GO:0010501 "RNA secondary structure
unwinding" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 EMBL:BA000025 EMBL:CH471081
GO:GO:0016607 GO:GO:0005681 TCDB:3.A.18.1.1 EMBL:AL662847
EMBL:AL662801 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CleanEx:HS_BAT1 GO:GO:0000245 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX CTD:7919 KO:K12812
GO:GO:0000346 GO:GO:0030621 GO:GO:0046784 EMBL:Z37166 EMBL:BT009909
EMBL:AK222912 EMBL:AB088115 EMBL:AB103621 EMBL:AB202112
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 EMBL:BC000361 EMBL:BC013006 EMBL:AF029061
EMBL:AF029062 IPI:IPI00641829 IPI:IPI00848161 PIR:I37201
RefSeq:NP_004631.1 RefSeq:NP_542165.1 UniGene:Hs.254042
UniGene:Hs.730849 PDB:1T5I PDB:1T6N PDB:1XTI PDB:1XTJ PDB:1XTK
PDBsum:1T5I PDBsum:1T6N PDBsum:1XTI PDBsum:1XTJ PDBsum:1XTK
ProteinModelPortal:Q13838 SMR:Q13838 IntAct:Q13838
MINT:MINT-1032422 STRING:Q13838 PhosphoSite:Q13838 DMDM:2500529
PaxDb:Q13838 PRIDE:Q13838 DNASU:7919 Ensembl:ENST00000383508
Ensembl:ENST00000396172 Ensembl:ENST00000400295
Ensembl:ENST00000400296 Ensembl:ENST00000412106
Ensembl:ENST00000412330 Ensembl:ENST00000413678
Ensembl:ENST00000414440 Ensembl:ENST00000415689
Ensembl:ENST00000416863 Ensembl:ENST00000430784
Ensembl:ENST00000431360 Ensembl:ENST00000441425
Ensembl:ENST00000445218 Ensembl:ENST00000448296
Ensembl:ENST00000453138 Ensembl:ENST00000456476
Ensembl:ENST00000456666 Ensembl:ENST00000458640 GeneID:7919
KEGG:hsa:7919 UCSC:uc003ntt.3 GeneCards:GC06M031500 HGNC:HGNC:13917
HPA:CAB034012 MIM:142560 neXtProt:NX_Q13838 PharmGKB:PA25262
InParanoid:Q13838 PhylomeDB:Q13838 ChiTaRS:DDX39B
EvolutionaryTrace:Q13838 GenomeRNAi:7919 NextBio:30405
ArrayExpress:Q13838 Bgee:Q13838 Genevestigator:Q13838
GermOnline:ENSG00000198563 GO:GO:0043008 Uniprot:Q13838
Length = 428
Score = 1028 (366.9 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|Q29024 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0046784 "intronless viral
mRNA export from host nucleus" evidence=IEA] [GO:0043008
"ATP-dependent protein binding" evidence=IEA] [GO:0030621 "U4 snRNA
binding" evidence=IEA] [GO:0017070 "U6 snRNA binding" evidence=IEA]
[GO:0010501 "RNA secondary structure unwinding" evidence=IEA]
[GO:0005688 "U6 snRNP" evidence=IEA] [GO:0005687 "U4 snRNP"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000346 "transcription export complex" evidence=IEA]
[GO:0000245 "spliceosomal complex assembly" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0016607
GO:GO:0005681 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000245 GO:GO:0004004 EMBL:AJ251914 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501 GO:GO:0017070
HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
CTD:7919 KO:K12812 OMA:NAENPAI GO:GO:0000346 GO:GO:0005687
GO:GO:0005688 GO:GO:0030621 GO:GO:0046784 EMBL:Z34846 PIR:I47126
RefSeq:NP_001005157.1 UniGene:Ssc.11719 ProteinModelPortal:Q29024
SMR:Q29024 STRING:Q29024 PRIDE:Q29024 Ensembl:ENSSSCT00000001529
GeneID:448813 KEGG:ssc:448813 ArrayExpress:Q29024 Uniprot:Q29024
Length = 428
Score = 1028 (366.9 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>MGI|MGI:99240 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=ISO] [GO:0000346 "transcription export complex"
evidence=ISO] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISO] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006406 "mRNA
export from nucleus" evidence=ISO] [GO:0006810 "transport"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=ISO] [GO:0030621 "U4 snRNA binding" evidence=ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=ISO] [GO:0051028 "mRNA transport" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 MGI:MGI:99240 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:AF118128 EMBL:AY255786 EMBL:AY255787
EMBL:AC007080 EMBL:AK088867 EMBL:AK051034 EMBL:BC011067
EMBL:BC024859 IPI:IPI00409462 RefSeq:NP_001239386.1
RefSeq:NP_062667.1 UniGene:Mm.439827 ProteinModelPortal:Q9Z1N5
SMR:Q9Z1N5 IntAct:Q9Z1N5 STRING:Q9Z1N5 PhosphoSite:Q9Z1N5
PaxDb:Q9Z1N5 PRIDE:Q9Z1N5 Ensembl:ENSMUST00000068056
Ensembl:ENSMUST00000172549 Ensembl:ENSMUST00000173731 GeneID:53817
KEGG:mmu:53817 InParanoid:Q9Z1N5 NextBio:310679 Bgee:Q9Z1N5
CleanEx:MM_BAT1A Genevestigator:Q9Z1N5 Uniprot:Q9Z1N5
Length = 428
Score = 1028 (366.9 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 24 ADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>RGD|70923 [details] [associations]
symbol:Ddx39b "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39B"
species:10116 "Rattus norvegicus" [GO:0000245 "spliceosomal complex
assembly" evidence=IEA;ISO] [GO:0000346 "transcription export
complex" evidence=IEA;ISO] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA;ISO] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO] [GO:0005681 "spliceosomal
complex" evidence=IEA;ISO] [GO:0005687 "U4 snRNP" evidence=IEA;ISO]
[GO:0005688 "U6 snRNP" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0008186 "RNA-dependent ATPase activity"
evidence=ISO] [GO:0008380 "RNA splicing" evidence=ISO] [GO:0010501
"RNA secondary structure unwinding" evidence=IEA;ISO] [GO:0016607
"nuclear speck" evidence=IEA] [GO:0017070 "U6 snRNA binding"
evidence=IEA;ISO] [GO:0030621 "U4 snRNA binding" evidence=IEA;ISO]
[GO:0043008 "ATP-dependent protein binding" evidence=IEA;ISO]
[GO:0046784 "intronless viral mRNA export from host nucleus"
evidence=IEA;ISO] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 RGD:70923 GO:GO:0005524
GO:GO:0005737 GO:GO:0016607 GO:GO:0005681 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000245 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0010501
GO:GO:0017070 HOVERGEN:HBG107334 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 CTD:7919 KO:K12812 OMA:NAENPAI
GO:GO:0000346 GO:GO:0005687 GO:GO:0005688 GO:GO:0030621
GO:GO:0046784 EMBL:M75168 EMBL:AF387339 EMBL:AJ314857 EMBL:BC080243
IPI:IPI00215291 PIR:A42811 RefSeq:NP_579834.2 UniGene:Rn.202950
ProteinModelPortal:Q63413 SMR:Q63413 STRING:Q63413
World-2DPAGE:0004:Q63413 PRIDE:Q63413 Ensembl:ENSRNOT00000001115
GeneID:114612 KEGG:rno:114612 UCSC:RGD:70923 InParanoid:Q63413
NextBio:618775 ArrayExpress:Q63413 Genevestigator:Q63413
GermOnline:ENSRNOG00000000841 Uniprot:Q63413
Length = 428
Score = 1028 (366.9 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 1.2e-136, Sum P(3) = 1.2e-136
Identities = 34/42 (80%), Positives = 38/42 (90%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
ADG +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 24 ADGT-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|Q3T147 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9913 "Bos taurus" [GO:0006406 "mRNA export from nucleus"
evidence=ISS] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0046784 "intronless viral mRNA export
from host nucleus" evidence=IEA] [GO:0043008 "ATP-dependent protein
binding" evidence=IEA] [GO:0030621 "U4 snRNA binding" evidence=IEA]
[GO:0017070 "U6 snRNA binding" evidence=IEA] [GO:0010501 "RNA
secondary structure unwinding" evidence=IEA] [GO:0005688 "U6 snRNP"
evidence=IEA] [GO:0005687 "U4 snRNP" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IEA] [GO:0000346 "transcription export
complex" evidence=IEA] [GO:0000245 "spliceosomal complex assembly"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0016607 GO:GO:0005681 GO:GO:0006406 GO:GO:0000398
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0000245
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0010501 GO:GO:0017070 HSSP:Q5STU4 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 EMBL:BC102131
IPI:IPI00690141 RefSeq:NP_001028801.1 UniGene:Bt.4945
ProteinModelPortal:Q3T147 SMR:Q3T147 STRING:Q3T147 PRIDE:Q3T147
Ensembl:ENSBTAT00000029090 GeneID:540191 KEGG:bta:540191 CTD:7919
InParanoid:Q3T147 KO:K12812 OMA:NAENPAI NextBio:20878478
ArrayExpress:Q3T147 GO:GO:0000346 GO:GO:0005687 GO:GO:0005688
GO:GO:0030621 GO:GO:0046784 Uniprot:Q3T147
Length = 428
Score = 1023 (365.2 bits), Expect = 3.9e-136, Sum P(3) = 3.9e-136
Identities = 199/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPSVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 3.9e-136, Sum P(3) = 3.9e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 3.9e-136, Sum P(3) = 3.9e-136
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|Q5ZHZ0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334
EMBL:AJ720994 IPI:IPI00585240 ProteinModelPortal:Q5ZHZ0 SMR:Q5ZHZ0
Uniprot:Q5ZHZ0
Length = 428
Score = 1022 (364.8 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 198/265 (74%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL ++KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPSVKVAVFFGGLAVKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 236 (88.1 bits), Expect = 2.8e-46, Sum P(3) = 2.8e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 386
Score = 186 (70.5 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 384 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 425
Score = 160 (61.4 bits), Expect = 5.0e-136, Sum P(3) = 5.0e-136
Identities = 31/42 (73%), Positives = 35/42 (83%)
Query: 57 ADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
A G G +K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 22 AGGDGSEAPPKKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|E2QY95 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:10212
KO:K13182 GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:AAEX03012368 RefSeq:XP_533895.2 Ensembl:ENSCAFT00000025943
GeneID:476689 KEGG:cfa:476689 NextBio:20852303 Uniprot:E2QY95
Length = 427
Score = 1015 (362.4 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 195/265 (73%), Positives = 222/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ LNL +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 1.6e-45, Sum P(3) = 1.6e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 182 (69.1 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 34/42 (80%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 151 (58.2 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 28/32 (87%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>UNIPROTKB|F1SCH3 [details] [associations]
symbol:DDX39A "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0006406 "mRNA export from nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:WANCVIS EMBL:FP103015
Ensembl:ENSSSCT00000015052 Uniprot:F1SCH3
Length = 475
Score = 1015 (362.4 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 195/265 (73%), Positives = 222/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 125 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 184
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ LNL +KHF+LDE
Sbjct: 185 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSLNLKNVKHFVLDE 244
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 245 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 304
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 305 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAI 364
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 365 HRGMAQEERLSRYQQFKDFQRRILV 389
Score = 240 (89.5 bits), Expect = 5.1e-45, Sum P(3) = 5.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 386 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 433
Score = 182 (69.1 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 34/42 (80%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 431 KGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 472
Score = 151 (58.2 bits), Expect = 6.4e-134, Sum P(3) = 6.4e-134
Identities = 28/32 (87%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 79 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 110
>UNIPROTKB|Q5E970 [details] [associations]
symbol:DDX39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39
isoform 1" species:9913 "Bos taurus" [GO:0006406 "mRNA export from
nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 GO:GO:0006406
GO:GO:0000398 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334
KO:K13182 OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549
OMA:WANCVIS EMBL:DAAA02019335 EMBL:BT021050 IPI:IPI00700228
RefSeq:NP_001029924.1 UniGene:Bt.29896 SMR:Q5E970 STRING:Q5E970
Ensembl:ENSBTAT00000029088 GeneID:614215 KEGG:bta:614215
InParanoid:Q5E970 NextBio:20899000 Uniprot:Q5E970
Length = 427
Score = 1015 (362.4 bits), Expect = 8.2e-134, Sum P(3) = 8.2e-134
Identities = 196/265 (73%), Positives = 222/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDILCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ LNL +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEEVLKRNCPHVVVGTPGRILALVRNRSLNLRNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 181 (68.8 bits), Expect = 8.2e-134, Sum P(3) = 8.2e-134
Identities = 33/42 (78%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 151 (58.2 bits), Expect = 8.2e-134, Sum P(3) = 8.2e-134
Identities = 28/32 (87%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>UNIPROTKB|F8VQ10 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:NAENPAI EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI01025218 SMR:F8VQ10
Ensembl:ENST00000417556 Ensembl:ENST00000547039
Ensembl:ENST00000547489 Ensembl:ENST00000548340
Ensembl:ENST00000548614 Ensembl:ENST00000550217
Ensembl:ENST00000552288 Uniprot:F8VQ10
Length = 443
Score = 1000 (357.1 bits), Expect = 1.0e-133, Sum P(3) = 1.0e-133
Identities = 201/280 (71%), Positives = 222/280 (79%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY---------------VLVMCHT 189
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE VY VLVMCHT
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVYLGRVLGRGFWCVFVSVLVMCHT 137
Query: 190 RELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN 249
RELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RN
Sbjct: 138 RELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN 197
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
K LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KF
Sbjct: 198 KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKF 257
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIA 369
M DPME++VDDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIA
Sbjct: 258 MQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIA 317
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
L+ LL EQNFPA++IHRGM QEERL +YQ+FKDF + + +
Sbjct: 318 LAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 357
Score = 236 (88.1 bits), Expect = 4.1e-46, Sum P(3) = 4.1e-46
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 354 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 401
Score = 186 (70.5 bits), Expect = 1.0e-133, Sum P(3) = 1.0e-133
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 399 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 440
Score = 160 (61.4 bits), Expect = 1.0e-133, Sum P(3) = 1.0e-133
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>ZFIN|ZDB-GENE-040426-2902 [details] [associations]
symbol:ddx39ab "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Ab" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-2902 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
HOVERGEN:HBG107334 KO:K13182 OrthoDB:EOG4XSKPX
GeneTree:ENSGT00660000095549 OMA:WANCVIS CTD:7919 EMBL:FP101915
EMBL:BC044169 EMBL:BC067555 EMBL:BC128804 EMBL:BX248081
IPI:IPI00631848 RefSeq:NP_998142.1 UniGene:Dr.75872 SMR:Q803W0
STRING:Q803W0 Ensembl:ENSDART00000019957 GeneID:406249
KEGG:dre:406249 InParanoid:Q803W0 NextBio:20817884 Uniprot:Q803W0
Length = 427
Score = 1012 (361.3 bits), Expect = 1.7e-133, Sum P(3) = 1.7e-133
Identities = 196/265 (73%), Positives = 219/265 (82%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM +KV VFFGG+ I+KDE+ LK P IVVGTPGRILALVRNK LNL +KHF+LDE
Sbjct: 137 KYMPTVKVAVFFGGMSIKKDEDVLKKSCPHIVVGTPGRILALVRNKTLNLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+Y DVLEFNQVVIFVKSV RC+ALS LL EQNFPA++I
Sbjct: 257 TLHGLQQYYCKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCVALSQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 176 (67.0 bits), Expect = 1.7e-133, Sum P(3) = 1.7e-133
Identities = 33/42 (78%), Positives = 40/42 (95%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDE DAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAITFVSDETDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 156 (60.0 bits), Expect = 1.7e-133, Sum P(3) = 1.7e-133
Identities = 32/42 (76%), Positives = 37/42 (88%)
Query: 59 GAGDALAK--QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
GA ++ A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 21 GAPESAAPVGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>ZFIN|ZDB-GENE-040426-1259 [details] [associations]
symbol:ddx39b "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39B" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-040426-1259 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:BX511233
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOVERGEN:HBG107334
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 KO:K12812
OMA:NNPLINC EMBL:FP085397 EMBL:BC055240 IPI:IPI00502330
RefSeq:NP_957237.1 UniGene:Dr.5423 SMR:Q7SXU7 STRING:Q7SXU7
Ensembl:ENSDART00000052355 GeneID:393917 KEGG:dre:393917 CTD:393917
InParanoid:Q7SXU7 NextBio:20814893 Uniprot:Q7SXU7
Length = 435
Score = 1012 (361.3 bits), Expect = 5.7e-133, Sum P(3) = 5.7e-133
Identities = 196/265 (73%), Positives = 220/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 85 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 144
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK +P +VVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 145 KYMPSVKVAVFFGGLSIKKDEEVLKKESPHVVVGTPGRILALSRNKSLNLRHIKHFILDE 204
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 205 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 264
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 265 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 324
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HR M Q+ERL +YQ+FKDF + + +
Sbjct: 325 HRAMPQDERLARYQQFKDFQRRILV 349
Score = 236 (88.1 bits), Expect = 3.3e-44, Sum P(3) = 3.3e-44
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 346 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 393
Score = 174 (66.3 bits), Expect = 5.7e-133, Sum P(3) = 5.7e-133
Identities = 33/42 (78%), Positives = 40/42 (95%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDA+ LN+VQDRF+V+ISELP+EID+S+YIE
Sbjct: 391 KGLAITFVSDENDARTLNDVQDRFEVNISELPEEIDISSYIE 432
Score = 153 (58.9 bits), Expect = 5.7e-133, Sum P(3) = 5.7e-133
Identities = 35/54 (64%), Positives = 42/54 (77%)
Query: 54 QIVADGAGDA--------LAKQKE-VKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
++ A GAGDA ++ +KE VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 17 EVDAGGAGDAGLGHSDGIISIRKEGVKGSYVSIHSSGFRDFLLKPELLRAIVDC 70
>MGI|MGI:1915528 [details] [associations]
symbol:Ddx39 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0006406 "mRNA export from nucleus" evidence=ISO]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
MGI:MGI:1915528 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0003676 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX EMBL:AK088894 EMBL:AK145927 EMBL:AK146294
EMBL:AK150997 EMBL:AK162752 EMBL:AK168079 EMBL:BC020134
IPI:IPI00123878 IPI:IPI00553461 RefSeq:NP_932099.2 UniGene:Mm.28222
ProteinModelPortal:Q8VDW0 SMR:Q8VDW0 STRING:Q8VDW0
PhosphoSite:Q8VDW0 PaxDb:Q8VDW0 PRIDE:Q8VDW0
Ensembl:ENSMUST00000019576 Ensembl:ENSMUST00000109810
Ensembl:ENSMUST00000172396 GeneID:68278 KEGG:mmu:68278
UCSC:uc008chc.2 CTD:68278 GeneTree:ENSGT00660000095549
InParanoid:Q8VDW0 OMA:WANCVIS NextBio:326910 Bgee:Q8VDW0
CleanEx:MM_DDX39 Genevestigator:Q8VDW0
GermOnline:ENSMUSG00000005481 Uniprot:Q8VDW0
Length = 427
Score = 1006 (359.2 bits), Expect = 7.2e-133, Sum P(3) = 7.2e-133
Identities = 193/265 (72%), Positives = 222/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVSVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 181 (68.8 bits), Expect = 7.2e-133, Sum P(3) = 7.2e-133
Identities = 33/42 (78%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 151 (58.2 bits), Expect = 7.2e-133, Sum P(3) = 7.2e-133
Identities = 28/32 (87%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>RGD|619920 [details] [associations]
symbol:Ddx39a "DEAD (Asp-Glu-Ala-Asp) box polypeptide 39A"
species:10116 "Rattus norvegicus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IEA;ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0006406 "mRNA export from nucleus"
evidence=IEA;ISO] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 EMBL:AF063447 RGD:619920
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:10212 HOVERGEN:HBG107334 KO:K13182
OrthoDB:EOG4XSKPX GeneTree:ENSGT00660000095549 OMA:WANCVIS
EMBL:BC086328 IPI:IPI00325144 RefSeq:NP_446015.2 UniGene:Rn.161716
ProteinModelPortal:Q5U216 SMR:Q5U216 STRING:Q5U216 PRIDE:Q5U216
Ensembl:ENSRNOT00000045974 GeneID:89827 KEGG:rno:89827
InParanoid:Q5U216 NextBio:617744 Genevestigator:Q5U216
GermOnline:ENSRNOG00000004373 Uniprot:Q5U216
Length = 427
Score = 1005 (358.8 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 193/265 (72%), Positives = 222/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPINGQVSVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDE+ LK + P +VVGTPGRILALVR++ LNL +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEDVLKKNCPHVVVGTPGRILALVRSRSLNLRNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVQRCMALAQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 181 (68.8 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 33/42 (78%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+TF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAVTFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 151 (58.2 bits), Expect = 9.2e-133, Sum P(3) = 9.2e-133
Identities = 28/32 (87%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>ZFIN|ZDB-GENE-030131-4275 [details] [associations]
symbol:ddx39aa "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 39Aa" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005575
"cellular_component" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-4275 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BC071505
IPI:IPI00510085 UniGene:Dr.1111 ProteinModelPortal:Q6IQA5
SMR:Q6IQA5 STRING:Q6IQA5 PRIDE:Q6IQA5 InParanoid:Q6IQA5
ArrayExpress:Q6IQA5 Bgee:Q6IQA5 Uniprot:Q6IQA5
Length = 427
Score = 1010 (360.6 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 195/265 (73%), Positives = 220/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMDILCQAKSGMGKTAVFVLATLQQ+E D V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDILCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYMS++K FFGG+ I+KDE+ LK + P IVVGTPGRILAL RNK L L +KHF+LDE
Sbjct: 137 KYMSSVKCAAFFGGMSIKKDEDVLKKNCPHIVVGTPGRILALSRNKTLTLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQ+IFR +PH KQ MMFSATLSKEIRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQDIFRLTPHEKQCMMFSATLSKEIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RC+ALS LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVVIFVKSVPRCVALSQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGMTQEERL +YQ+FKDF + + +
Sbjct: 317 HRGMTQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 1.4e-44, Sum P(3) = 1.4e-44
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 169 (64.5 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 31/42 (73%), Positives = 39/42 (92%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLA+ F SDE DAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAVIFVSDETDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 155 (59.6 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 30/36 (83%), Positives = 33/36 (91%)
Query: 63 ALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
A +KEVKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 27 ATTGKKEVKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>UNIPROTKB|O00148 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006406 "mRNA export from
nucleus" evidence=IGI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003676
GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:U90426 EMBL:AK026614 EMBL:BC001009
IPI:IPI00940237 RefSeq:NP_005795.2 UniGene:Hs.311609
ProteinModelPortal:O00148 SMR:O00148 IntAct:O00148
MINT:MINT-1035991 STRING:O00148 PhosphoSite:O00148 PaxDb:O00148
PeptideAtlas:O00148 PRIDE:O00148 DNASU:10212
Ensembl:ENST00000242776 GeneID:10212 KEGG:hsa:10212 UCSC:uc002myo.3
CTD:10212 GeneCards:GC19M014521 HGNC:HGNC:17821 neXtProt:NX_O00148
PharmGKB:PA27226 HOVERGEN:HBG107334 InParanoid:O00148 KO:K13182
OrthoDB:EOG4XSKPX PhylomeDB:O00148 ChiTaRS:DDX39A GenomeRNAi:10212
NextBio:38664 ArrayExpress:O00148 Bgee:O00148 CleanEx:HS_DDX39
Genevestigator:O00148 GermOnline:ENSG00000123136 Uniprot:O00148
Length = 427
Score = 1002 (357.8 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 191/265 (72%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQV+IFVKSV RC+AL+ LL EQNFPA++I
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQVIIFVKSVQRCMALAQLLVEQNFPAIAI 316
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 317 HRGMAQEERLSRYQQFKDFQRRILV 341
Score = 240 (89.5 bits), Expect = 2.1e-45, Sum P(3) = 2.1e-45
Identities = 46/48 (95%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 338 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKGL 385
Score = 182 (69.1 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 34/42 (80%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+++ELP+EID+STYIE
Sbjct: 383 KGLAITFVSDENDAKILNDVQDRFEVNVAELPEEIDISTYIE 424
Score = 150 (57.9 bits), Expect = 1.9e-132, Sum P(3) = 1.9e-132
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>WB|WBGene00001840 [details] [associations]
symbol:hel-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0008340
"determination of adult lifespan" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0009790 "embryo
development" evidence=IMP] [GO:0001703 "gastrulation with mouth
forming first" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005634 GO:GO:0008340 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0006915 GO:GO:0002119 GO:GO:0008380
GO:GO:0006397 GO:GO:0010171 GO:GO:0005681 GO:GO:0003723
GO:GO:0040035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00660000095549 OMA:NAENPAI EMBL:Z54327 EMBL:U08102
PIR:T19484 RefSeq:NP_001021985.1 ProteinModelPortal:Q18212
SMR:Q18212 STRING:Q18212 PaxDb:Q18212 PRIDE:Q18212
EnsemblMetazoa:C26D10.2a.1 EnsemblMetazoa:C26D10.2a.2 GeneID:174333
KEGG:cel:CELE_C26D10.2 UCSC:C26D10.2a CTD:174333 WormBase:C26D10.2a
InParanoid:Q18212 NextBio:883586 ArrayExpress:Q18212 GO:GO:0001703
Uniprot:Q18212
Length = 425
Score = 917 (327.9 bits), Expect = 3.5e-123, Sum P(3) = 3.5e-123
Identities = 177/265 (66%), Positives = 206/265 (77%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD++CQAKSGMGKTAVFV+ TLQQLE D V V+ MCHTRELAFQISKEYERFS
Sbjct: 74 QAILGMDVVCQAKSGMGKTAVFVITTLQQLEPVDGEVSVVCMCHTRELAFQISKEYERFS 133
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KY+ +KV VFFGG+ I+KDEE L P IVVGTPGR+LAL R+ KL L +K+F+LDE
Sbjct: 134 KYLPGVKVAVFFGGMAIKKDEERLANDCPHIVVGTPGRMLALARSGKLKLDKVKYFVLDE 193
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKM+ +MRRDVQEI + +P KQVMMFSATL KE+R VCK+FM DPMEVYVDDEAKL
Sbjct: 194 CDKMIGDADMRRDVQEIVKMTPQQKQVMMFSATLPKELRTVCKRFMQDPMEVYVDDEAKL 253
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQHYV D LEFNQVVIFVK+V RC AL LL+EQNFP+++I
Sbjct: 254 TLHGLQQHYVKLKEAEKNRRLLNLLDALEFNQVVIFVKAVKRCEALHQLLTEQNFPSIAI 313
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HR M QEERL +YQ FKDF K + +
Sbjct: 314 HRQMAQEERLSRYQAFKDFQKRILV 338
Score = 231 (86.4 bits), Expect = 7.4e-44, Sum P(3) = 7.4e-44
Identities = 44/48 (91%), Positives = 47/48 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+LFGRGMDIERVNIVFNYDMPEDSD+YLHRVARAGRFGTK +
Sbjct: 335 RILVATDLFGRGMDIERVNIVFNYDMPEDSDSYLHRVARAGRFGTKGL 382
Score = 190 (71.9 bits), Expect = 3.5e-123, Sum P(3) = 3.5e-123
Identities = 36/44 (81%), Positives = 42/44 (95%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
KGLAITF SDENDAK LN+VQDRFD+SI+ELP++ID+STYIEGR
Sbjct: 380 KGLAITFVSDENDAKTLNSVQDRFDISITELPEKIDVSTYIEGR 423
Score = 139 (54.0 bits), Expect = 3.5e-123, Sum P(3) = 3.5e-123
Identities = 29/40 (72%), Positives = 31/40 (77%)
Query: 59 GAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
G GDA ++ KG Y SIHSSGFRDFLLKPEILRAI DC
Sbjct: 24 GGGDA----RKTKGTYASIHSSGFRDFLLKPEILRAIGDC 59
>UNIPROTKB|Q5STU3 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AL662847 EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 EMBL:CR942185 IPI:IPI00790636
SMR:Q5STU3 STRING:Q5STU3 Ensembl:ENST00000376177
Ensembl:ENST00000400293 Ensembl:ENST00000430703
Ensembl:ENST00000438578 Ensembl:ENST00000446341
Ensembl:ENST00000450987 Ensembl:ENST00000453488 Uniprot:Q5STU3
Length = 425
Score = 1028 (366.9 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 200/265 (75%), Positives = 221/265 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++I
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAI 317
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HRGM QEERL +YQ+FKDF + + +
Sbjct: 318 HRGMPQEERLSRYQQFKDFQRRILV 342
Score = 185 (70.2 bits), Expect = 4.6e-24, Sum P(2) = 4.6e-24
Identities = 35/36 (97%), Positives = 35/36 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHR
Sbjct: 339 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 374
Score = 160 (61.4 bits), Expect = 1.4e-118, Sum P(2) = 1.4e-118
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|H0Y7G4 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
Ensembl:ENST00000420337 Ensembl:ENST00000426766
Ensembl:ENST00000448800 Uniprot:H0Y7G4
Length = 328
Score = 916 (327.5 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 179/241 (74%), Positives = 197/241 (81%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXX 348
KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YV
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 349 XDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLA 408
DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF + +
Sbjct: 182 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 241
Query: 409 I 409
+
Sbjct: 242 V 242
Score = 236 (88.1 bits), Expect = 2.8e-35, Sum P(2) = 2.8e-35
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 239 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 286
Score = 186 (70.5 bits), Expect = 1.7e-109, Sum P(2) = 1.7e-109
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 284 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 325
>UNIPROTKB|K9J6N8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9615 "Canis lupus familiaris" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00660000095549 EMBL:AAEX03008212
Ensembl:ENSCAFT00000000797 Uniprot:K9J6N8
Length = 310
Score = 872 (312.0 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 168/224 (75%), Positives = 186/224 (83%)
Query: 186 MCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
MCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILA
Sbjct: 1 MCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILA 60
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
L RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPV
Sbjct: 61 LARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 120
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVT 365
C+KFM DPME++VDDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV
Sbjct: 121 CRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQ 180
Query: 366 RCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
RCIAL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF + + +
Sbjct: 181 RCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 224
Score = 236 (88.1 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 221 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 268
Score = 186 (70.5 bits), Expect = 7.3e-105, Sum P(2) = 7.3e-105
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 266 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 307
>TAIR|locus:2147987 [details] [associations]
symbol:UAP56a "homolog of human UAP56 a" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=RCA] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0009506
GO:GO:0005524 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0046686
GO:GO:0005730 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL360314 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ010466 EMBL:AY052303
EMBL:BT001052 EMBL:AK221273 EMBL:AK221708 EMBL:AK226428
IPI:IPI00760330 IPI:IPI00760336 IPI:IPI00760344 PIR:T51343
RefSeq:NP_568244.2 RefSeq:NP_568245.1 UniGene:At.49007
UniGene:At.73904 ProteinModelPortal:Q56XG6 SMR:Q56XG6 IntAct:Q56XG6
STRING:Q56XG6 PRIDE:Q56XG6 EnsemblPlants:AT5G11170.1
EnsemblPlants:AT5G11200.1 GeneID:830986 GeneID:830990
KEGG:ath:AT5G11170 KEGG:ath:AT5G11200 GeneFarm:932 TAIR:At5g11170
InParanoid:Q56XG6 PhylomeDB:Q56XG6 ProtClustDB:CLSN2689601
Genevestigator:Q56XG6 Uniprot:Q56XG6
Length = 427
Score = 887 (317.3 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 178/305 (58%), Positives = 225/305 (73%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS
Sbjct: 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFS 138
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R K L+L ++HFILDE
Sbjct: 139 TYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 198
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM DPME+YVDDEAKL
Sbjct: 199 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDPMEIYVDDEAKL 258
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGL QHY+ D L+FNQVVIFVKSV+R L+ LL E NFP++ I
Sbjct: 259 TLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNKLLVECNFPSICI 318
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS-ELPDEIDLST 443
H GM+QEERL +Y+ FK+ HK + + A+D I +++ R ++ I+ ++PD D
Sbjct: 319 HSGMSQEERLTRYKSFKEGHKRILV--ATDLVGRGI--DIE-RVNIVINYDMPDSADTYL 373
Query: 444 YIEGR 448
+ GR
Sbjct: 374 HRVGR 378
Score = 202 (76.2 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 340 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 387
Score = 134 (52.2 bits), Expect = 2.9e-32, Sum P(3) = 2.9e-32
Identities = 24/41 (58%), Positives = 34/41 (82%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + +D+++LN VQ+RF+V I ELP++ID STY+
Sbjct: 385 KGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYM 425
Score = 121 (47.7 bits), Expect = 1.4e-99, Sum P(2) = 1.4e-99
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVD 97
VK YV IHSSGFRDFLLKPE+LRAIVD
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVD 63
>UNIPROTKB|F8VZL8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:CR753892 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040
EMBL:BX248516 EMBL:BX927320 EMBL:CR753820 EMBL:CR753864
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI00643815
SMR:F8VZL8 Ensembl:ENST00000546633 Ensembl:ENST00000546637
Ensembl:ENST00000548331 Ensembl:ENST00000549374
Ensembl:ENST00000550435 Ensembl:ENST00000551031 Uniprot:F8VZL8
Length = 323
Score = 838 (300.0 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 167/222 (75%), Positives = 181/222 (81%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
TLHGLQQ+YV DVLEFNQ + KSV R
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQEIT-CKSVQR 298
Score = 160 (61.4 bits), Expect = 1.6e-98, Sum P(2) = 1.6e-98
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>TAIR|locus:2148027 [details] [associations]
symbol:UAP56b "homolog of human UAP56 b" species:3702
"Arabidopsis thaliana" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005618
"cell wall" evidence=IDA] [GO:0005829 "cytosol" evidence=RCA]
[GO:0009506 "plasmodesma" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0009506 GO:GO:0005524 EMBL:CP002688
GO:GO:0005618 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
UniGene:At.49007 UniGene:At.73904 GeneID:830990 KEGG:ath:AT5G11200
OMA:LECVINY IPI:IPI00938969 RefSeq:NP_001154706.1
ProteinModelPortal:F4JWF6 SMR:F4JWF6 PRIDE:F4JWF6
EnsemblPlants:AT5G11200.2 Uniprot:F4JWF6
Length = 486
Score = 604 (217.7 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 115/171 (67%), Positives = 140/171 (81%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD++CQAKSGMGKTAVFVL+TLQQ+E + V LV+CHTRELA+QI E+ RFS
Sbjct: 79 QAILGMDVICQAKSGMGKTAVFVLSTLQQIEPSPGQVSALVLCHTRELAYQICNEFVRFS 138
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
Y+ + KV VF+GG+ I+ ++ LK P IVVGTPGR+LAL R K L+L ++HFILDE
Sbjct: 139 TYLPDTKVSVFYGGVNIKIHKDLLKNECPHIVVGTPGRVLALAREKDLSLKNVRHFILDE 198
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPME 315
CDKMLE L+MRRDVQEIF+ +PH KQVMMFSATLSKEIRPVCKKFM D +E
Sbjct: 199 CDKMLESLDMRRDVQEIFKMTPHDKQVMMFSATLSKEIRPVCKKFMQDFLE 249
Score = 286 (105.7 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 64/137 (46%), Positives = 87/137 (63%)
Query: 313 PMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALST 372
PME+YVDDEAKLTLHGL QHY+ D L+FNQVVIFVKSV+R L+
Sbjct: 306 PMEIYVDDEAKLTLHGLVQHYIKLSEMEKNRKLNDLLDALDFNQVVIFVKSVSRAAELNK 365
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSI 432
LL E NFP++ IH GM+QEERL +Y+ FK+ HK + + A+D I +++ R ++ I
Sbjct: 366 LLVECNFPSICIHSGMSQEERLTRYKSFKEGHKRILV--ATDLVGRGI--DIE-RVNIVI 420
Query: 433 S-ELPDEIDLSTYIEGR 448
+ ++PD D + GR
Sbjct: 421 NYDMPDSADTYLHRVGR 437
Score = 202 (76.2 bits), Expect = 7.5e-32, Sum P(3) = 7.5e-32
Identities = 38/48 (79%), Positives = 43/48 (89%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L GRG+DIERVNIV NYDMP+ +DTYLHRV RAGRFGTK +
Sbjct: 399 RILVATDLVGRGIDIERVNIVINYDMPDSADTYLHRVGRAGRFGTKGL 446
Score = 134 (52.2 bits), Expect = 1.7e-82, Sum P(3) = 1.7e-82
Identities = 24/41 (58%), Positives = 34/41 (82%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF + +D+++LN VQ+RF+V I ELP++ID STY+
Sbjct: 444 KGLAITFVASASDSEVLNQVQERFEVDIKELPEQIDTSTYM 484
Score = 121 (47.7 bits), Expect = 1.9e-98, Sum P(3) = 1.9e-98
Identities = 24/28 (85%), Positives = 25/28 (89%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVD 97
VK YV IHSSGFRDFLLKPE+LRAIVD
Sbjct: 36 VKKGYVGIHSSGFRDFLLKPELLRAIVD 63
>UNIPROTKB|F6WLT2 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00643815 SMR:F6WLT2 Ensembl:ENST00000414088
Ensembl:ENST00000417558 Ensembl:ENST00000427214
Ensembl:ENST00000435182 Ensembl:ENST00000438449
Ensembl:ENST00000439927 Ensembl:ENST00000455916 Uniprot:F6WLT2
Length = 289
Score = 831 (297.6 bits), Expect = 8.7e-98, Sum P(2) = 8.7e-98
Identities = 163/212 (76%), Positives = 176/212 (83%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKL 257
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQ 356
TLHGLQQ+YV DVLEFNQ
Sbjct: 258 TLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQ 289
Score = 160 (61.4 bits), Expect = 8.7e-98, Sum P(2) = 8.7e-98
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|A4RBS3 [details] [associations]
symbol:SUB2 "ATP-dependent RNA helicase SUB2"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0008380 GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000230 EMBL:CM001237 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K12812
RefSeq:XP_003720935.1 ProteinModelPortal:A4RBS3 SMR:A4RBS3
STRING:A4RBS3 PRIDE:A4RBS3 EnsemblFungi:MGG_02806T0 GeneID:2682359
KEGG:mgr:MGG_02806 OrthoDB:EOG4H49C6 Uniprot:A4RBS3
Length = 436
Score = 857 (306.7 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 175/308 (56%), Positives = 227/308 (73%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LG DI+CQAKSG+GKTAVFVL TLQQ+E VLVMCHTRELAFQI EY RFS
Sbjct: 85 QAMLGGDIICQAKSGLGKTAVFVLTTLQQVEPVAGECSVLVMCHTRELAFQIRNEYNRFS 144
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLK---THNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
KYM +IK GVFFGG PIQKD E LK TH P I+VGTPGR+ ALVR+K L LS ++ F+
Sbjct: 145 KYMPDIKTGVFFGGTPIQKDAELLKNKETH-PHIIVGTPGRLNALVRDKFLRLSSVRIFV 203
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDECDKML+Q++MRRDVQEIFR++P KQVMMFSATLS EI+P+CKKFM +P E YVD++
Sbjct: 204 LDECDKMLDQIDMRRDVQEIFRATPQQKQVMMFSATLSDEIKPICKKFMQNPTEHYVDED 263
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
KLTLHGLQQ++V D L+FNQV+IFVKS R L LL E NFP+
Sbjct: 264 TKLTLHGLQQYFVALEEKEKNRKLNELLDDLQFNQVIIFVKSTLRATELDKLLRECNFPS 323
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS-ELPDEID 440
+++H G++QEER+++Y+EFK+F+K + + A+D I +++ R +++I+ ++P + D
Sbjct: 324 IAVHSGVSQEERIRRYKEFKEFNKRICV--ATDVFGRGI--DIE-RINLAINYDMPADAD 378
Query: 441 LSTYIEGR 448
+ GR
Sbjct: 379 SYLHRVGR 386
Score = 193 (73.0 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 34/48 (70%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIER+N+ NYDMP D+D+YLHRV RAGRFGTK +
Sbjct: 348 RICVATDVFGRGIDIERINLAINYDMPADADSYLHRVGRAGRFGTKGL 395
Score = 125 (49.1 bits), Expect = 7.7e-97, Sum P(2) = 7.7e-97
Identities = 23/28 (82%), Positives = 26/28 (92%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDC 98
KG+YV IHS+GFRDFLLKPE+LRAI DC
Sbjct: 43 KGSYVGIHSTGFRDFLLKPELLRAIGDC 70
Score = 100 (40.3 bits), Expect = 6.0e-28, Sum P(3) = 6.0e-28
Identities = 19/42 (45%), Positives = 30/42 (71%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP-DEIDLSTYI 445
KGLA++F +++ D ++L ++ RF+V I E P D ID STY+
Sbjct: 393 KGLAVSFVTNDQDKEVLTAIEKRFEVPIPEFPKDGIDASTYM 434
>UNIPROTKB|Q8N5M0 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:CH471106
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
UniGene:Hs.311609 HGNC:HGNC:17821 ChiTaRS:DDX39A EMBL:AC008569
HOVERGEN:HBG072062 EMBL:BC032128 IPI:IPI00166874 SMR:Q8N5M0
IntAct:Q8N5M0 STRING:Q8N5M0 Ensembl:ENST00000324340 Uniprot:Q8N5M0
Length = 322
Score = 810 (290.2 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
Identities = 157/214 (73%), Positives = 177/214 (82%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM DPMEV+VDDE KL
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQDPMEVFVDDETKL 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVV 358
TLHGLQQ+YV DVLEFNQ V
Sbjct: 257 TLHGLQQYYVKLKDSEKNRKLFDLLDVLEFNQPV 290
Score = 150 (57.9 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>SGD|S000002242 [details] [associations]
symbol:SUB2 "Component of the TREX complex required for
nuclear mRNA export" species:4932 "Saccharomyces cerevisiae"
[GO:0006406 "mRNA export from nucleus" evidence=IMP;IDA;IPI]
[GO:0000346 "transcription export complex" evidence=IPI]
[GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0005681 "spliceosomal
complex" evidence=IEA;TAS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IGI;ISA] [GO:0006283 "transcription-coupled
nucleotide-excision repair" evidence=IMP] [GO:0006368
"transcription elongation from RNA polymerase II promoter"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IMP] [GO:0006348 "chromatin silencing at telomere"
evidence=IMP] [GO:0000781 "chromosome, telomeric region"
evidence=IPI] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0008380 "RNA splicing"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0031124 "mRNA 3'-end processing" evidence=IMP]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002242 GO:GO:0005524
EMBL:BK006938 GO:GO:0005681 GO:GO:0003723 GO:GO:0006348
GO:GO:0006368 GO:GO:0006406 GO:GO:0000398 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0000781 GO:GO:0004004
GO:GO:0006283 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0031124
GeneTree:ENSGT00660000095549 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:Z74132 EMBL:AY692907 PIR:S67620
RefSeq:NP_010199.1 ProteinModelPortal:Q07478 SMR:Q07478
DIP:DIP-5343N IntAct:Q07478 MINT:MINT-526164 STRING:Q07478
PaxDb:Q07478 PeptideAtlas:Q07478 EnsemblFungi:YDL084W GeneID:851475
KEGG:sce:YDL084W CYGD:YDL084w OMA:NNPLINC NextBio:968777
Genevestigator:Q07478 GermOnline:YDL084W Uniprot:Q07478
Length = 446
Score = 823 (294.8 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
Identities = 155/268 (57%), Positives = 205/268 (76%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++ G D+LCQAKSG+GKTAVFVL+TLQQL+ V V+V+C+ RELA+QI EY RFS
Sbjct: 95 QSIHGTDVLCQAKSGLGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYLRFS 154
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KYM ++K VF+GG PI KD E LK + P IVV TPGR+ ALVR K ++LS +K+F++
Sbjct: 155 KYMPDVKTAVFYGGTPISKDAELLKNKDTAPHIVVATPGRLKALVREKYIDLSHVKNFVI 214
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE+L+MRRDVQEIFR++P KQVMMFSATLS+EIRP+C++F+ +P+E++VDDEA
Sbjct: 215 DECDKVLEELDMRRDVQEIFRATPRDKQVMMFSATLSQEIRPICRRFLQNPLEIFVDDEA 274
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQ+Y+ D LEFNQV+IFVKS TR L+ LL+ NFPA+
Sbjct: 275 KLTLHGLQQYYIKLEEREKNRKLAQLLDDLEFNQVIIFVKSTTRANELTKLLNASNFPAI 334
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAIT 410
++H M QEER+ +Y+ FKDF K + ++
Sbjct: 335 TVHGHMKQEERIARYKAFKDFEKRICVS 362
Score = 174 (66.3 bits), Expect = 3.5e-18, Sum P(2) = 3.5e-18
Identities = 30/48 (62%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI V+T++FGRG+DIER+N+ NYD+ ++D YLHRV RAGRFGTK +
Sbjct: 358 RICVSTDVFGRGIDIERINLAINYDLTNEADQYLHRVGRAGRFGTKGL 405
Score = 125 (49.1 bits), Expect = 1.4e-12, Sum P(2) = 1.4e-12
Identities = 40/114 (35%), Positives = 58/114 (50%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPED-S 129
KG+YV IHS+GF+DFLLKPE+ RAI+DC G E + V + +P+
Sbjct: 53 KGSYVGIHSTGFKDFLLKPELSRAIIDC----------G----FEHPSEVQQHTIPQSIH 98
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV 183
T + A++G G AV + L Q G+ AV V+ ++L N Y+
Sbjct: 99 GTDVLCQAKSG-LGKTAVFVLSTLQQLDPVPGEVAVVVICNARELAYQIRNEYL 151
Score = 117 (46.2 bits), Expect = 2.1e-92, Sum P(2) = 2.1e-92
Identities = 23/42 (54%), Positives = 32/42 (76%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDE-IDLSTYI 445
KGLAI+F S + D ++L +Q+RFDV I+E P+E ID STY+
Sbjct: 403 KGLAISFVSSKEDEEVLAKIQERFDVKIAEFPEEGIDPSTYL 444
>UNIPROTKB|H0Y7X6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
ProteinModelPortal:H0Y7X6 PRIDE:H0Y7X6 Ensembl:ENST00000437943
Bgee:H0Y7X6 Uniprot:H0Y7X6
Length = 325
Score = 916 (327.5 bits), Expect = 6.3e-92, P = 6.3e-92
Identities = 179/241 (74%), Positives = 197/241 (81%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXX 348
KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YV
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 349 XDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLA 408
DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM QEERL +YQ+FKDF + +
Sbjct: 182 LDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRIL 241
Query: 409 I 409
+
Sbjct: 242 V 242
Score = 185 (70.2 bits), Expect = 6.2e-12, P = 6.2e-12
Identities = 35/36 (97%), Positives = 35/36 (97%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHR 135
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHR
Sbjct: 239 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHR 274
>DICTYBASE|DDB_G0269932 [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] [GO:0000348 "mRNA
branch site recognition" evidence=ISS] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269932
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0005681 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K12812 GO:GO:0000348 RefSeq:XP_646415.1
ProteinModelPortal:Q55CR6 SMR:Q55CR6 PRIDE:Q55CR6
EnsemblProtists:DDB0233387 GeneID:8617372 KEGG:ddi:DDB_G0269932
InParanoid:Q55CR6 OMA:GGANMNP ProtClustDB:CLSZ2429041
Uniprot:Q55CR6
Length = 428
Score = 766 (274.7 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 139/265 (52%), Positives = 196/265 (73%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LG D++CQAKSGMGKTAVFVL+TLQQ++ + + LV+C+TRELA+QI E++RF+
Sbjct: 81 QAILGTDVICQAKSGMGKTAVFVLSTLQQIDNNPNGITTLVLCNTRELAYQICDEFDRFT 140
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KY+ N+K V +GG+P+Q ++ +K P I++GTPGRIL L L+L +K FILDE
Sbjct: 141 KYLPNVKTAVIYGGIPVQTHKDLIKEKKPNIIIGTPGRILQLASEGALSLKEIKQFILDE 200
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
CD MLE L+MR+DVQ+IF+ P KQVMMFSATLS IRP+CKKFM++P+E+Y++D +KL
Sbjct: 201 CDTMLESLDMRKDVQKIFKLIPANKQVMMFSATLSDTIRPICKKFMNNPLEIYINDGSKL 260
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TLHGLQQ+YV D L+FNQ VIFVKSV R AL+ +L + FP++ I
Sbjct: 261 TLHGLQQYYVPITEEQKNKKLIELLDSLDFNQAVIFVKSVRRADALNKILQDIGFPSICI 320
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
HR + Q++R+++Y++FK+F + +
Sbjct: 321 HRDLDQKDRIEQYRKFKNFESRIMV 345
Score = 207 (77.9 bits), Expect = 6.7e-20, Sum P(2) = 6.7e-20
Identities = 42/85 (49%), Positives = 59/85 (69%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
RI+VATN+FGRG+DIERVN+V NYDM E +DTYLHRV RAGRFGTK + + +
Sbjct: 342 RIMVATNIFGRGIDIERVNVVINYDMAESADTYLHRVGRAGRFGTKGLAISFVPSKEDPV 401
Query: 160 MGKT-AVFVLATLQQLETTDSNVYV 183
+ + + FV++ + + T D + Y+
Sbjct: 402 LEQVQSKFVVSIKELVATPDPSTYM 426
Score = 95 (38.5 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 20/43 (46%), Positives = 26/43 (60%)
Query: 56 VADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
V + D K +V++HSSGFR+FLLKPE+ R I DC
Sbjct: 24 VQNDVTDTKNKTANRADTHVAMHSSGFREFLLKPELERVIGDC 66
Score = 86 (35.3 bits), Expect = 9.9e-92, Sum P(3) = 9.9e-92
Identities = 21/43 (48%), Positives = 26/43 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
KGLAI+F + D +L VQ +F VSI EL D STY+ G
Sbjct: 387 KGLAISFVPSKEDP-VLEQVQSKFVVSIKELVATPDPSTYMSG 428
>UNIPROTKB|B4DP52 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CH471081
GO:GO:0003676 EMBL:AL662847 EMBL:AL662801 EMBL:CR753892
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 HOVERGEN:HBG107334 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
EMBL:AK298194 IPI:IPI00792043 SMR:B4DP52 STRING:B4DP52
Ensembl:ENST00000415382 Ensembl:ENST00000548499
Ensembl:ENST00000548770 Ensembl:ENST00000549326
Ensembl:ENST00000549433 Ensembl:ENST00000551056
Ensembl:ENST00000552079 UCSC:uc011dnn.2 Uniprot:B4DP52
Length = 350
Score = 746 (267.7 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 145/199 (72%), Positives = 162/199 (81%)
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQ
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
Query: 391 EERLKKYQEFKDFHKGLAI 409
EERL +YQ+FKDF + + +
Sbjct: 246 EERLSRYQQFKDFQRRILV 264
Score = 236 (88.1 bits), Expect = 3.8e-34, Sum P(2) = 3.8e-34
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 261 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 308
Score = 186 (70.5 bits), Expect = 1.5e-91, Sum P(2) = 1.5e-91
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 306 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 347
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 866 (309.9 bits), Expect = 1.3e-86, P = 1.3e-86
Identities = 173/307 (56%), Positives = 225/307 (73%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+++LG D+LCQAKSGMGKTAVFVL+TLQQ+E D V VLV+CHTRELAFQI EY RFS
Sbjct: 84 QSILGTDVLCQAKSGMGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEYARFS 143
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLK--THNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
KY+ +++ VF+GG+ I++D E K + +P IVV TPGR+ ALVR K L ++ +KHF+L
Sbjct: 144 KYLPDVRTAVFYGGINIKQDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVL 203
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DECDK+LE ++MRRD+QE+FR++P KQVMMFSATLS EIRP+CKKFM +P+E+YVDDE
Sbjct: 204 DECDKLLESVDMRRDIQEVFRATPPQKQVMMFSATLSNEIRPICKKFMQNPLEIYVDDET 263
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
KLTLHGLQQHYV D LEFNQVVIFVKSV+R L LL E NFP++
Sbjct: 264 KLTLHGLQQHYVKLEEKAKNRKINDLLDSLEFNQVVIFVKSVSRANELDRLLRECNFPSI 323
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS-ELPDEIDL 441
IH G+ QEER+K+Y+ FKDF K + + A+D I +++ R ++ I+ ++PD D
Sbjct: 324 CIHGGLPQEERIKRYKAFKDFDKRICV--ATDVFGRGI--DIE-RVNIVINYDMPDSPDS 378
Query: 442 STYIEGR 448
+ GR
Sbjct: 379 YLHRVGR 385
Score = 195 (73.7 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 36/48 (75%), Positives = 42/48 (87%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RI VAT++FGRG+DIERVNIV NYDMP+ D+YLHRV RAGRFGTK +
Sbjct: 347 RICVATDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGL 394
Score = 141 (54.7 bits), Expect = 3.2e-23, Sum P(2) = 3.2e-23
Identities = 25/41 (60%), Positives = 37/41 (90%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLAITF+S E D++IL+ +Q+RF+V+I+ELPDEID+ +Y+
Sbjct: 392 KGLAITFSSSEEDSQILDKIQERFEVNITELPDEIDVGSYM 432
Score = 123 (48.4 bits), Expect = 4.7e-15, Sum P(2) = 4.7e-15
Identities = 41/118 (34%), Positives = 61/118 (51%)
Query: 66 KQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDM 125
++ + KG+YV IHS+GFRDFLLKPE+LRAI D F ++++V I
Sbjct: 37 EKSDKKGSYVGIHSTGFRDFLLKPELLRAITDSG--------FEHPSEVQQVCI------ 82
Query: 126 PEDS-DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY 182
P+ T + A++G G AV + L Q + G+ +V VL ++L N Y
Sbjct: 83 PQSILGTDVLCQAKSG-MGKTAVFVLSTLQQIEPVDGEVSVLVLCHTRELAFQIKNEY 139
>UNIPROTKB|F6TRA5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00796920 SMR:F6TRA5 Ensembl:ENST00000428098
Ensembl:ENST00000438301 Ensembl:ENST00000438433
Ensembl:ENST00000444726 Ensembl:ENST00000446272
Ensembl:ENST00000449100 Ensembl:ENST00000455645 Uniprot:F6TRA5
Length = 238
Score = 674 (242.3 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 133/161 (82%), Positives = 142/161 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPV
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPV 238
Score = 160 (61.4 bits), Expect = 3.2e-81, Sum P(2) = 3.2e-81
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|B1Q2N1 [details] [associations]
symbol:DDX39 "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 UniGene:Hs.311609
HGNC:HGNC:17821 EMBL:AC008569 EMBL:AB254849 IPI:IPI00062206
SMR:B1Q2N1 STRING:B1Q2N1 Ensembl:ENST00000454233
Ensembl:ENST00000588692 UCSC:uc010dzm.1 HOVERGEN:HBG072062
Uniprot:B1Q2N1
Length = 267
Score = 682 (245.1 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 130/168 (77%), Positives = 148/168 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 136
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDE
Sbjct: 137 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDE 196
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM D
Sbjct: 197 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 244
Score = 150 (57.9 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>UNIPROTKB|K7EQN7 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821 EMBL:AC008569
Ensembl:ENST00000589675 Uniprot:K7EQN7
Length = 255
Score = 682 (245.1 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 130/168 (77%), Positives = 148/168 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 88 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 147
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++KV VFFGGL I+KDEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDE
Sbjct: 148 KYMPSVKVSVFFGGLSIKKDEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDE 207
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
CDKMLEQL+MRRDVQEIFR +PH KQ MMFSATLSK+IRPVC+KFM D
Sbjct: 208 CDKMLEQLDMRRDVQEIFRLTPHEKQCMMFSATLSKDIRPVCRKFMQD 255
Score = 150 (57.9 bits), Expect = 5.1e-81, Sum P(2) = 5.1e-81
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>GENEDB_PFALCIPARUM|PFB0445c [details] [associations]
symbol:PFB0445c "helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 706 (253.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 149/344 (43%), Positives = 214/344 (62%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
++G+Y ++H+ GF+DF LKPE+LRAI + F ++++ I +
Sbjct: 45 MRGSYATVHTGGFKDFFLKPELLRAISESG--------FEHPSEVQQETIPAAI-----T 91
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV--LVMC 187
T + A++G G AV + IL Q + + N +V L +
Sbjct: 92 GTDILCQAKSG-MGKTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLA 150
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGTPGRILAL 246
HTRELA+QI E++RFSKY+ N++ V +GG+ + K + K N P I++GTPGRILAL
Sbjct: 151 HTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRILAL 210
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++KE+R VC
Sbjct: 211 IREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVC 270
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
KKF+ +P+E+++DDEAKL LHGL QHYV D LEFNQV+IFVKSVTR
Sbjct: 271 KKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTR 330
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
I L LL+E NFP+++IH G+ Q+ER+++Y +FK F + ++
Sbjct: 331 AITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVS 374
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 46/87 (52%), Positives = 58/87 (66%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
RILV+T+LFGRG+DIERVNIV NYDMPE+SD+YLHRV RAGRFGTK L + + +
Sbjct: 370 RILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKG-LAVTFVSSQEDT 428
Query: 160 MGKTAV---FVLATLQQLETTDSNVYV 183
+ V F +A + D N Y+
Sbjct: 429 LALNEVQTRFEVAISEMPNKIDCNEYI 455
Score = 122 (48.0 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLA+TF S + D LN VQ RF+V+ISE+P++ID + YI
Sbjct: 415 KGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYI 455
>UNIPROTKB|Q9TY94 [details] [associations]
symbol:UAP56 "DEAD box helicase, UAP56" species:36329
"Plasmodium falciparum 3D7" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 GenomeReviews:AE001362_GR HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K12812
ProtClustDB:CLSZ2429041 PIR:G71614 RefSeq:XP_001349607.1
ProteinModelPortal:Q9TY94 SMR:Q9TY94 EnsemblProtists:PFB0445c:mRNA
GeneID:812689 KEGG:pfa:PFB0445c EuPathDB:PlasmoDB:PF3D7_0209800
OMA:LECVINY Uniprot:Q9TY94
Length = 457
Score = 706 (253.6 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 149/344 (43%), Positives = 214/344 (62%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
++G+Y ++H+ GF+DF LKPE+LRAI + F ++++ I +
Sbjct: 45 MRGSYATVHTGGFKDFFLKPELLRAISESG--------FEHPSEVQQETIPAAI-----T 91
Query: 130 DTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV--LVMC 187
T + A++G G AV + IL Q + + N +V L +
Sbjct: 92 GTDILCQAKSG-MGKTAVFVLSILQQLDTNENQDMQDTKEMNNDNNNNGDNKFVRCLGLA 150
Query: 188 HTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHN-PQIVVGTPGRILAL 246
HTRELA+QI E++RFSKY+ N++ V +GG+ + K + K N P I++GTPGRILAL
Sbjct: 151 HTRELAYQIKNEFDRFSKYLKNVRCEVVYGGISMNKHIKLFKEDNIPHIIIGTPGRILAL 210
Query: 247 VRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVC 306
+R K L ++HF+LDECDK LE+L+MR DVQ+IF S+P KQVM FSAT++KE+R VC
Sbjct: 211 IREKYLITDKIQHFVLDECDKCLEKLDMRSDVQKIFISTPLKKQVMFFSATMAKEMRDVC 270
Query: 307 KKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTR 366
KKF+ +P+E+++DDEAKL LHGL QHYV D LEFNQV+IFVKSVTR
Sbjct: 271 KKFLQNPVEIFIDDEAKLKLHGLLQHYVKLQEKDKTRKLIEILDALEFNQVIIFVKSVTR 330
Query: 367 CIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
I L LL+E NFP+++IH G+ Q+ER+++Y +FK F + ++
Sbjct: 331 AITLDKLLTECNFPSIAIHGGLEQQERIERYDKFKKFENRILVS 374
Score = 213 (80.0 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 46/87 (52%), Positives = 58/87 (66%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
RILV+T+LFGRG+DIERVNIV NYDMPE+SD+YLHRV RAGRFGTK L + + +
Sbjct: 370 RILVSTDLFGRGIDIERVNIVINYDMPENSDSYLHRVGRAGRFGTKG-LAVTFVSSQEDT 428
Query: 160 MGKTAV---FVLATLQQLETTDSNVYV 183
+ V F +A + D N Y+
Sbjct: 429 LALNEVQTRFEVAISEMPNKIDCNEYI 455
Score = 122 (48.0 bits), Expect = 1.4e-80, Sum P(2) = 1.4e-80
Identities = 23/41 (56%), Positives = 31/41 (75%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
KGLA+TF S + D LN VQ RF+V+ISE+P++ID + YI
Sbjct: 415 KGLAVTFVSSQEDTLALNEVQTRFEVAISEMPNKIDCNEYI 455
>UNIPROTKB|F6UN21 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00642800 SMR:F6UN21 Ensembl:ENST00000416969
Ensembl:ENST00000419338 Ensembl:ENST00000420958
Ensembl:ENST00000436919 Ensembl:ENST00000436995
Ensembl:ENST00000446909 Ensembl:ENST00000449863 Uniprot:F6UN21
Length = 236
Score = 663 (238.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 131/159 (82%), Positives = 140/159 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIR 303
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIR
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIR 236
Score = 160 (61.4 bits), Expect = 4.6e-80, Sum P(2) = 4.6e-80
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|F6S4E6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00641634 SMR:F6S4E6 Ensembl:ENST00000415027
Ensembl:ENST00000432189 Ensembl:ENST00000444267
Ensembl:ENST00000444480 Ensembl:ENST00000451051
Ensembl:ENST00000452908 Ensembl:ENST00000456662 Uniprot:F6S4E6
Length = 231
Score = 640 (230.4 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 126/154 (81%), Positives = 135/154 (87%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 137
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDE
Sbjct: 138 KYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATL 298
CDKMLEQL+MRRDVQEIFR +PH KQVMMFSATL
Sbjct: 198 CDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATL 231
Score = 160 (61.4 bits), Expect = 1.2e-77, Sum P(2) = 1.2e-77
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>UNIPROTKB|H0Y557 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y557 PRIDE:H0Y557
Ensembl:ENST00000416325 Bgee:H0Y557 Uniprot:H0Y557
Length = 189
Score = 719 (258.2 bits), Expect = 4.8e-71, P = 4.8e-71
Identities = 142/188 (75%), Positives = 152/188 (80%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXX 348
KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ+YV
Sbjct: 122 KQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDL 181
Query: 349 XDVLEFNQ 356
DVLEFNQ
Sbjct: 182 LDVLEFNQ 189
>UNIPROTKB|E9PP12 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 EMBL:AL662847 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917 ChiTaRS:DDX39B
IPI:IPI00792043 ProteinModelPortal:E9PP12 SMR:E9PP12
Ensembl:ENST00000467694 ArrayExpress:E9PP12 Bgee:E9PP12
Uniprot:E9PP12
Length = 247
Score = 694 (249.4 bits), Expect = 2.1e-68, P = 2.1e-68
Identities = 137/182 (75%), Positives = 149/182 (81%)
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQ
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
Query: 391 EE 392
EE
Sbjct: 246 EE 247
>UNIPROTKB|F6UJC5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 EMBL:AL662847 EMBL:AL662801 EMBL:CR753892
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:BX001040 EMBL:BX248516 EMBL:BX927320 EMBL:CR753820
EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
IPI:IPI00985355 SMR:F6UJC5 Ensembl:ENST00000415390
Ensembl:ENST00000427425 Ensembl:ENST00000427489
Ensembl:ENST00000431908 Ensembl:ENST00000446328
Ensembl:ENST00000448000 Ensembl:ENST00000452792 Uniprot:F6UJC5
Length = 245
Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
Identities = 135/180 (75%), Positives = 147/180 (81%)
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLE
Sbjct: 66 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLE 125
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
QL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQ
Sbjct: 126 QLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQ 185
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 186 QYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 245
>UNIPROTKB|H0Y800 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 PROSITE:PS51194 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CT009531
ProteinModelPortal:H0Y800 SMR:H0Y800 PRIDE:H0Y800
Ensembl:ENST00000432549 Bgee:H0Y800 Uniprot:H0Y800
Length = 179
Score = 679 (244.1 bits), Expect = 8.2e-67, P = 8.2e-67
Identities = 134/179 (74%), Positives = 146/179 (81%)
Query: 212 VGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQ 271
V VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQ
Sbjct: 1 VAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQ 60
Query: 272 LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQ 331
L+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++VDDE KLTLHGLQQ
Sbjct: 61 LDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFVDDETKLTLHGLQQ 120
Query: 332 HYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
+YV DVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRGM Q
Sbjct: 121 YYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQ 179
>UNIPROTKB|K7EPJ3 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821 EMBL:AC008569
Ensembl:ENST00000590315 Uniprot:K7EPJ3
Length = 189
Score = 476 (172.6 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 97/137 (70%), Positives = 111/137 (81%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISKEYERFS
Sbjct: 65 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISKEYERFS 124
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
KYM ++K DEE LK + P +VVGTPGRILALVRN+ +L +KHF+LDE
Sbjct: 125 KYMPSVK------------DEEVLKKNCPHVVVGTPGRILALVRNRSFSLKNVKHFVLDE 172
Query: 265 CDKMLEQLEMRRDVQEI 281
CDKMLEQL+MRRDVQEI
Sbjct: 173 CDKMLEQLDMRRDVQEI 189
Score = 150 (57.9 bits), Expect = 2.6e-59, Sum P(2) = 2.6e-59
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 19 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 50
>UNIPROTKB|B4DIJ6 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:BX001040 EMBL:BX248516
EMBL:BX927320 EMBL:CR753820 EMBL:CR753864 UniGene:Hs.254042
UniGene:Hs.730849 HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185
EMBL:AK295634 IPI:IPI00910878 SMR:B4DIJ6 STRING:B4DIJ6
Ensembl:ENST00000453105 Ensembl:ENST00000546533
Ensembl:ENST00000547092 Ensembl:ENST00000547978
Ensembl:ENST00000548205 Ensembl:ENST00000548413
Ensembl:ENST00000548818 UCSC:uc011dno.1 HOVERGEN:HBG102589
Uniprot:B4DIJ6
Length = 243
Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
Identities = 120/178 (67%), Positives = 135/178 (75%)
Query: 135 RVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAF 194
R++RA + A L C ++S G + L+ Q+ V VLVMCHTRELAF
Sbjct: 29 RMSRAPMSPSTA-LAFVTSCSSQSCSGPLSTVALSIRQK-------VSVLVMCHTRELAF 80
Query: 195 QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNL 254
QISKEYERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL
Sbjct: 81 QISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNL 140
Query: 255 SLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD 312
+KHFILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM D
Sbjct: 141 KHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQD 198
>UNIPROTKB|H0Y6G9 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y6G9 PRIDE:H0Y6G9
Ensembl:ENST00000455806 Bgee:H0Y6G9 Uniprot:H0Y6G9
Length = 138
Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
Identities = 112/137 (81%), Positives = 118/137 (86%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATLSKEIRPV 305
KQVMMFSATLSKEIRPV
Sbjct: 122 KQVMMFSATLSKEIRPV 138
>UNIPROTKB|H0Y4V8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y4V8 PRIDE:H0Y4V8
Ensembl:ENST00000427927 Bgee:H0Y4V8 Uniprot:H0Y4V8
Length = 136
Score = 551 (199.0 bits), Expect = 3.0e-53, P = 3.0e-53
Identities = 110/135 (81%), Positives = 116/135 (85%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATLSKEIR 303
KQVMMFSATLSKEIR
Sbjct: 122 KQVMMFSATLSKEIR 136
>UNIPROTKB|H0Y6N8 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HGNC:HGNC:13917
ChiTaRS:DDX39B EMBL:CT009531 ProteinModelPortal:H0Y6N8 PRIDE:H0Y6N8
Ensembl:ENST00000427652 Bgee:H0Y6N8 Uniprot:H0Y6N8
Length = 131
Score = 528 (190.9 bits), Expect = 8.3e-51, P = 8.3e-51
Identities = 105/130 (80%), Positives = 111/130 (85%)
Query: 169 ATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYL 228
ATLQQLE V VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE L
Sbjct: 2 ATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEVL 61
Query: 229 KTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHT 288
K + P IVVGTPGRILAL RNK LNL +KHFILDECDKMLEQL+MRRDVQEIFR +PH
Sbjct: 62 KKNCPHIVVGTPGRILALARNKSLNLKHIKHFILDECDKMLEQLDMRRDVQEIFRMTPHE 121
Query: 289 KQVMMFSATL 298
KQVMMFSATL
Sbjct: 122 KQVMMFSATL 131
>UNIPROTKB|F6QYI9 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662801
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX248516 HGNC:HGNC:13917 ChiTaRS:DDX39B
IPI:IPI00641325 SMR:F6QYI9 Ensembl:ENST00000417136
Ensembl:ENST00000449757 Uniprot:F6QYI9
Length = 187
Score = 356 (130.4 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 70/85 (82%), Positives = 75/85 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 101 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 160
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLK 229
KYM N+KV VFFGGL I+KDEE LK
Sbjct: 161 KYMPNVKVAVFFGGLSIKKDEEVLK 185
Score = 160 (61.4 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 48 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 86
>UNIPROTKB|F6V772 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:CR753892 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00640787 SMR:F6V772 Ensembl:ENST00000411415
Ensembl:ENST00000439691 Ensembl:ENST00000441479
Ensembl:ENST00000442537 Ensembl:ENST00000445783 Uniprot:F6V772
Length = 187
Score = 356 (130.4 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 70/85 (82%), Positives = 75/85 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKEYERFS
Sbjct: 101 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFS 160
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLK 229
KYM N+KV VFFGGL I+KDEE LK
Sbjct: 161 KYMPNVKVAVFFGGLSIKKDEEVLK 185
Score = 160 (61.4 bits), Expect = 9.8e-48, Sum P(2) = 9.8e-48
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 48 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 86
>UNIPROTKB|H0Y400 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 EMBL:AL662847 EMBL:AL662801
EMBL:CR753892 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 EMBL:CT009531 Ensembl:ENST00000412386
Ensembl:ENST00000417023 Ensembl:ENST00000417995
Ensembl:ENST00000422243 Ensembl:ENST00000428107
Ensembl:ENST00000433293 Ensembl:ENST00000445602
Ensembl:ENST00000455400 Uniprot:H0Y400
Length = 187
Score = 321 (118.1 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 62/97 (63%), Positives = 73/97 (75%)
Query: 313 PMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALST 372
PME++VDDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+
Sbjct: 10 PMEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQ 69
Query: 373 LLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAI 409
LL EQNFPA++IHRGM QEERL +YQ+FKDF + + +
Sbjct: 70 LLVEQNFPAIAIHRGMPQEERLSRYQQFKDFQRRILV 106
Score = 236 (88.1 bits), Expect = 4.0e-36, Sum P(2) = 4.0e-36
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 103 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 150
Score = 177 (67.4 bits), Expect = 7.6e-46, Sum P(2) = 7.6e-46
Identities = 34/40 (85%), Positives = 39/40 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+Y
Sbjct: 148 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSY 187
>UNIPROTKB|F8W0J0 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR001650
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0004386 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CT009531 IPI:IPI00893580 ProteinModelPortal:F8W0J0 SMR:F8W0J0
Ensembl:ENST00000552820 ArrayExpress:F8W0J0 Uniprot:F8W0J0
Length = 183
Score = 305 (112.4 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 61/97 (62%), Positives = 72/97 (74%)
Query: 314 MEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTL 373
ME++VDDE KLTLHGLQQ+YV DVLEFNQVVIFVKSV RCIAL+ L
Sbjct: 1 MEIFVDDETKLTLHGLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQL 60
Query: 374 LSEQNFPAVSIHRGMTQEER-LKKYQEFKDFHKGLAI 409
L EQNFPA++IHRGM QEER L +YQ+FKDF + + +
Sbjct: 61 LVEQNFPAIAIHRGMPQEERWLSRYQQFKDFQRRILV 97
Score = 236 (88.1 bits), Expect = 4.6e-37, Sum P(2) = 4.6e-37
Identities = 45/48 (93%), Positives = 46/48 (95%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 94 RILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 141
Score = 186 (70.5 bits), Expect = 4.1e-45, Sum P(2) = 4.1e-45
Identities = 36/42 (85%), Positives = 41/42 (97%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 139 KGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 180
>WB|WBGene00002083 [details] [associations]
symbol:inf-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0019915 "lipid storage" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0008340 GO:GO:0009792
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0040011
GO:GO:0000003 GO:GO:0019915 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:FO081266 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ
EMBL:Z12116 PIR:S26281 RefSeq:NP_001022623.1 RefSeq:NP_001022624.1
UniGene:Cel.6803 ProteinModelPortal:P27639 SMR:P27639
DIP:DIP-27102N IntAct:P27639 MINT:MINT-1112147 STRING:P27639
PaxDb:P27639 PRIDE:P27639 EnsemblMetazoa:F57B9.6a.1
EnsemblMetazoa:F57B9.6a.2 GeneID:175966 KEGG:cel:CELE_F57B9.6
UCSC:F57B9.6a.1 CTD:175966 WormBase:F57B9.6a WormBase:F57B9.6b
InParanoid:P27639 NextBio:890522 Uniprot:P27639
Length = 402
Score = 375 (137.1 bits), Expect = 9.1e-44, Sum P(3) = 9.1e-44
Identities = 88/263 (33%), Positives = 141/263 (53%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQ+++ D +V LVM TRELA QI K +Y+
Sbjct: 66 GKDVIAQAQSGTGKTATFSVSILQRIDHEDPHVQALVMAPTRELAQQIQKVMSALGEYL- 124
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+ + GG ++ D+ L+ +VVGTPGR+ ++ L+ S +K F+LDE D+M
Sbjct: 125 NVNILPCIGGTSVRDDQRKLEA-GIHVVVGTPGRVGDMINRNALDTSRIKMFVLDEADEM 183
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + E+FRS P QV++ SAT+ E+ V +FM +P+ + V + +LTL G
Sbjct: 184 LSR-GFKDQIYEVFRSMPQDVQVVLLSATMPSEVLDVTNRFMRNPIRILVKKD-ELTLEG 241
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ +V+ Q VIF + + L+ ++E F +H
Sbjct: 242 IRQFYINVQKDEWKFDCLCDLYNVVNVTQAVIFCNTRRKVDTLTEKMTENQFTVSCLHGD 301
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q ER +EF+ + IT
Sbjct: 302 MDQAERDTIMREFRSGSSRVLIT 324
Score = 150 (57.9 bits), Expect = 1.5e-11, Sum P(3) = 1.5e-11
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 320 RVLITTDILARGIDVQQVSLVINYDLPSNRENYIHRIGRSGRFGRKGV 367
Score = 72 (30.4 bits), Expect = 9.1e-44, Sum P(3) = 9.1e-44
Identities = 16/38 (42%), Positives = 24/38 (63%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + ENDA+ L ++ + I E+P+ I DL
Sbjct: 365 KGVAINFVT-ENDARQLKEIESYYTTQIEEMPESIADL 401
Score = 42 (19.8 bits), Expect = 9.1e-44, Sum P(3) = 9.1e-44
Identities = 11/26 (42%), Positives = 15/26 (57%)
Query: 70 VKGAYVSIHSSGFRDFLLKPEILRAI 95
++G Y + S F D LK E+LR I
Sbjct: 20 IEGNYDQVVES-FDDMELKEELLRGI 44
>CGD|CAL0004095 [details] [associations]
symbol:TIF species:5476 "Candida albicans" [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] [GO:0005829 "cytosol"
evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095 GO:GO:0005524
GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045 EMBL:AACQ01000042
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 365 (133.5 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 85/254 (33%), Positives = 133/254 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKTA F ++ LQ++ + L++ TRELA QI Y+
Sbjct: 60 GRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLK 119
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V GG + D E ++ QIVVGTPGR+L ++ + +K FILDE D+M
Sbjct: 120 -VTVHASIGGTSMSDDIEAFRS-GVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEM 177
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + IFR P T Q+++ SAT+ +++ V KFM++P+ + V + +LTL G
Sbjct: 178 LSS-GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKD-ELTLEG 235
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ D + Q VIF + ++ L+ L EQ+F +IH
Sbjct: 236 IKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHAD 295
Query: 388 MTQEERLKKYQEFK 401
+ Q ER +EF+
Sbjct: 296 LPQAERDTIMKEFR 309
Score = 153 (58.9 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 361
Score = 57 (25.1 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F +D D ++ ++ + I E+P +I
Sbjct: 359 KGVAINFVTDR-DVGMMREIEKFYSTQIEEMPADI 392
Score = 37 (18.1 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 82 FRDFLLKPEILRAI 95
F D LKP I+R I
Sbjct: 25 FDDLNLKPNIVRGI 38
>UNIPROTKB|P87206 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:237561 "Candida albicans SC5314" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0004095
GO:GO:0005524 GO:GO:0005737 GO:GO:0003743 EMBL:AACQ01000045
EMBL:AACQ01000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K03257 EMBL:D84472 RefSeq:XP_718147.1 RefSeq:XP_718416.1
ProteinModelPortal:P87206 STRING:P87206 PRIDE:P87206 GeneID:3639917
GeneID:3640190 KEGG:cal:CaO19.10834 KEGG:cal:CaO19.3324
Uniprot:P87206
Length = 397
Score = 365 (133.5 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 85/254 (33%), Positives = 133/254 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKTA F ++ LQ++ + L++ TRELA QI Y+
Sbjct: 60 GRDVLAQAQSGTGKTATFTISALQRINENEKATQALILAPTRELALQIKNVITAIGLYLK 119
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V GG + D E ++ QIVVGTPGR+L ++ + +K FILDE D+M
Sbjct: 120 -VTVHASIGGTSMSDDIEAFRS-GVQIVVGTPGRVLDMIERRYFKTDKVKMFILDEADEM 177
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + IFR P T Q+++ SAT+ +++ V KFM++P+ + V + +LTL G
Sbjct: 178 LSS-GFKEQIYNIFRLLPETTQIVLLSATMPQDVLEVTTKFMNNPVRILVKKD-ELTLEG 235
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q Y+ D + Q VIF + ++ L+ L EQ+F +IH
Sbjct: 236 IKQFYINVELEDYKFDCLCDLYDSISVTQAVIFCNTRSKVEFLTNKLREQHFTVSAIHAD 295
Query: 388 MTQEERLKKYQEFK 401
+ Q ER +EF+
Sbjct: 296 LPQAERDTIMKEFR 309
Score = 153 (58.9 bits), Expect = 6.3e-10, Sum P(3) = 6.3e-10
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 314 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 361
Score = 57 (25.1 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 11/35 (31%), Positives = 20/35 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F +D D ++ ++ + I E+P +I
Sbjct: 359 KGVAINFVTDR-DVGMMREIEKFYSTQIEEMPADI 392
Score = 37 (18.1 bits), Expect = 1.2e-40, Sum P(3) = 1.2e-40
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 82 FRDFLLKPEILRAI 95
F D LKP I+R I
Sbjct: 25 FDDLNLKPNIVRGI 38
>ASPGD|ASPL0000037981 [details] [associations]
symbol:AN2932 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005829 "cytosol"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:BN001306 EMBL:AACD01000051 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 KO:K03257 OMA:TENDARQ RefSeq:XP_660536.1
PRIDE:Q5B948 GeneID:2874390 KEGG:ani:AN2932.2 OrthoDB:EOG4PG98F
Uniprot:Q5B948
Length = 398
Score = 355 (130.0 bits), Expect = 1.3e-39, Sum P(3) = 1.3e-39
Identities = 86/256 (33%), Positives = 137/256 (53%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D++ QA+SG GKTA F ++ LQ+L+ L++ TRELA QI K +
Sbjct: 60 VKGNDVIAQAQSGTGKTATFSISALQKLDPNVKACQALIVAPTRELAQQIQKVVIAIGDF 119
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M NI+ GG ++ D L+ PQIVVGTPGRI +++ + L +K FILDE D
Sbjct: 120 M-NIQCHACIGGTAVRDDMNALR-EGPQIVVGTPGRIHDMIQRRVLKTDQMKMFILDEAD 177
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + +IF+ P + QV++ SAT+ +++ V KFM DP+ + V + +LTL
Sbjct: 178 EMLSR-GFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKQ-ELTL 235
Query: 327 HGLQQHYVXXXXXX-XXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + + Q VIF + + L+ L+ ++F ++H
Sbjct: 236 EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMH 295
Query: 386 RGMTQEERLKKYQEFK 401
M Q +R +EF+
Sbjct: 296 GDMEQAQRDVIMKEFR 311
Score = 154 (59.3 bits), Expect = 5.0e-10, Sum P(3) = 5.0e-10
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 316 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 363
Score = 53 (23.7 bits), Expect = 1.3e-39, Sum P(3) = 1.3e-39
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + + D +++ ++ + I E+P + DL
Sbjct: 361 KGVAINFVTAD-DVRMMREIEQFYSTQIEEMPMNVADL 397
Score = 41 (19.5 bits), Expect = 1.3e-39, Sum P(3) = 1.3e-39
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 69 EVKGAYVSIHSSGFRDFLLKPEILRAI 95
+++ Y I S F LKPE+LR +
Sbjct: 15 QIESNYDEITDS-FDSMELKPELLRGV 40
>SGD|S000002319 [details] [associations]
symbol:DHH1 "Cytoplasmic DExD/H-box helicase, stimulates mRNA
decapping" species:4932 "Saccharomyces cerevisiae" [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA;IDA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IMP] [GO:0005737 "cytoplasm" evidence=IEA;IDA] [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=IMP] [GO:0003724 "RNA helicase activity" evidence=IGI;ISS]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IGI;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006810 "transport"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003676 "nucleic
acid binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002319 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 EMBL:BK006938 GO:GO:0003723
GO:GO:0000753 GO:GO:0000932 EMBL:Z67750 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0034063 GO:GO:0008026 eggNOG:COG0513
GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0000290 OrthoDB:EOG4QJVWF EMBL:X66057 EMBL:Z74208 PIR:S31229
RefSeq:NP_010121.1 PDB:1S2M PDBsum:1S2M ProteinModelPortal:P39517
SMR:P39517 DIP:DIP-1243N IntAct:P39517 MINT:MINT-385061
STRING:P39517 PaxDb:P39517 PeptideAtlas:P39517 EnsemblFungi:YDL160C
GeneID:851394 KEGG:sce:YDL160C CYGD:YDL160c
EvolutionaryTrace:P39517 NextBio:968552 Genevestigator:P39517
GermOnline:YDL160C Uniprot:P39517
Length = 506
Score = 352 (129.0 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 87/256 (33%), Positives = 132/256 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA FV+ TL++++ + + L+M TRELA Q S+ K
Sbjct: 80 AITGRDILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGK 139
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ I V GG ++ D L I+VGTPGR+L L K +LS FI+DE
Sbjct: 140 HCG-ISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEA 197
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DKML + + + +++I P T Q ++FSAT ++ K +H P E+ + +E LT
Sbjct: 198 DKMLSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLMEE--LT 254
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +++ + H
Sbjct: 255 LKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYYSH 314
Query: 386 RGMTQEERLKKYQEFK 401
M Q+ER K + EF+
Sbjct: 315 ARMKQQERNKVFHEFR 330
Score = 142 (55.0 bits), Expect = 5.3e-08, Sum P(3) = 5.3e-08
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV ++L RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 335 RTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFG 378
Score = 54 (24.1 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H GLAI + ND L ++ I+ +P ID S Y+
Sbjct: 379 HLGLAINLIN-WNDRFNLYKIEQELGTEIAAIPATIDKSLYV 419
Score = 39 (18.8 bits), Expect = 3.5e-39, Sum P(3) = 3.5e-39
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F DF LK E+L I +
Sbjct: 48 FEDFYLKRELLMGIFE 63
Score = 38 (18.4 bits), Expect = 2.1e-06, Sum P(3) = 2.1e-06
Identities = 10/45 (22%), Positives = 18/45 (40%)
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIV 236
LA + +RF+ Y ++G +P D+ N + V
Sbjct: 382 LAINLINWNDRFNLYKIEQELGTEIAAIPATIDKSLYVAENDETV 426
>POMBASE|SPAC1006.07 [details] [associations]
symbol:SPAC1006.07 "translation initiation factor eIF4A
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0002183
"cytoplasmic translational initiation" evidence=NAS] [GO:0003743
"translation initiation factor activity" evidence=ISO] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISO] [GO:0005524
"ATP binding" evidence=IC] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006413 "translational initiation" evidence=ISO] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC1006.07 GO:GO:0005829 GO:GO:0005524
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0016281 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0002183 KO:K03257 OrthoDB:EOG4PG98F
EMBL:X80796 EMBL:L40627 PIR:S71745 RefSeq:NP_594854.1
ProteinModelPortal:P47943 SMR:P47943 STRING:P47943 PRIDE:P47943
EnsemblFungi:SPAC1006.07.1 GeneID:2542948 KEGG:spo:SPAC1006.07
OMA:PILEMED NextBio:20803983 Uniprot:P47943
Length = 392
Score = 345 (126.5 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 86/266 (32%), Positives = 141/266 (53%)
Query: 147 VLG-MDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+LG D+L QA+SG GKTA F ++ LQ+++T+ L++ TRELA QI K
Sbjct: 53 ILGERDVLAQAQSGTGKTATFSISVLQKIDTSLKQCQALILAPTRELAQQIQKVVVALGD 112
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
M N++ GG ++ D L+ +VVGTPGR+ +++ + L ++ F+LDE
Sbjct: 113 LM-NVECHACIGGTLVRDDMAALQA-GVHVVVGTPGRVHDMIQRRALPTDAVQMFVLDEA 170
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + + + +IF+ P T QV++ SAT+ +++ V KFM DP+ + V + +LT
Sbjct: 171 DEMLSR-GFKDQIYDIFQLLPPTAQVVLLSATMPQDVLEVTTKFMRDPIRILVKKD-ELT 228
Query: 326 LHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
L G++Q YV + + Q VIF + + L+ L+E++F S+
Sbjct: 229 LEGIKQFYVAVEKEEWKLDTLCDLYETVTVTQAVIFCNTRRKVDWLTEQLTERDFTVSSM 288
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M Q +R EF+ + IT
Sbjct: 289 HGDMDQAQRDTLMHEFRTGSSRILIT 314
Score = 151 (58.2 bits), Expect = 5.1e-10, Sum P(3) = 5.1e-10
Identities = 24/48 (50%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 310 RILITTDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 357
Score = 54 (24.1 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG++I F +++ D +++ ++ ++ I E+P I DL
Sbjct: 355 KGVSINFVTND-DVRMMREIEQFYNTHIEEMPMNIADL 391
Score = 43 (20.2 bits), Expect = 7.2e-39, Sum P(3) = 7.2e-39
Identities = 9/14 (64%), Positives = 10/14 (71%)
Query: 82 FRDFLLKPEILRAI 95
F D LKPE+LR I
Sbjct: 21 FDDMNLKPELLRGI 34
>FB|FBgn0001942 [details] [associations]
symbol:eIF-4a "Eukaryotic initiation factor 4a" species:7227
"Drosophila melanogaster" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0006413 "translational initiation"
evidence=ISS;NAS] [GO:0016281 "eukaryotic translation initiation
factor 4F complex" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS;NAS] [GO:0005829 "cytosol"
evidence=ISS;NAS] [GO:0017116 "single-stranded DNA-dependent
ATP-dependent DNA helicase activity" evidence=NAS] [GO:0006268 "DNA
unwinding involved in replication" evidence=NAS] [GO:0000339 "RNA
cap binding" evidence=NAS] [GO:0003729 "mRNA binding" evidence=NAS]
[GO:0007446 "imaginal disc growth" evidence=TAS] [GO:0002168
"instar larval development" evidence=TAS] [GO:0009950
"dorsal/ventral axis specification" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000381 "regulation of alternative mRNA
splicing, via spliceosome" evidence=IMP] [GO:0005634 "nucleus"
evidence=IC] [GO:0000022 "mitotic spindle elongation" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0005875 "microtubule associated complex" evidence=IDA]
[GO:0007067 "mitosis" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0048132 "female germ-line stem
cell division" evidence=IGI;IMP] [GO:0030718 "germ-line stem cell
maintenance" evidence=IMP] [GO:0048477 "oogenesis" evidence=IGI]
[GO:0072686 "mitotic spindle" evidence=IDA] [GO:0051297 "centrosome
organization" evidence=IMP] [GO:0005813 "centrosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005634
GO:GO:0005813 GO:GO:0005875 GO:GO:0007067 EMBL:AE014134
GO:GO:0051297 GO:GO:0016281 GO:GO:0006974 GO:GO:0003743
GO:GO:0030718 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000022 GO:GO:0072686 GO:GO:0048132 GO:GO:0002168
GO:GO:0008026 GO:GO:0000381 eggNOG:COG0513 GO:GO:0003724
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0007446
GeneTree:ENSGT00530000062880 KO:K03257 OMA:TENDARQ EMBL:X69045
EMBL:AF145621 EMBL:AY069283 EMBL:AY121623 PIR:S30278
RefSeq:NP_001245907.1 RefSeq:NP_476595.1 RefSeq:NP_723137.1
RefSeq:NP_723138.1 RefSeq:NP_723139.1 UniGene:Dm.7226
ProteinModelPortal:Q02748 SMR:Q02748 DIP:DIP-18113N IntAct:Q02748
MINT:MINT-892982 STRING:Q02748 PaxDb:Q02748 PRIDE:Q02748
EnsemblMetazoa:FBtr0079175 EnsemblMetazoa:FBtr0079176
EnsemblMetazoa:FBtr0079177 EnsemblMetazoa:FBtr0079178
EnsemblMetazoa:FBtr0307068 EnsemblMetazoa:FBtr0331201 GeneID:33835
KEGG:dme:Dmel_CG9075 CTD:33835 FlyBase:FBgn0001942
InParanoid:Q02748 OrthoDB:EOG4B8GVF PhylomeDB:Q02748 ChiTaRS:eIF-4a
GenomeRNAi:33835 NextBio:785508 Bgee:Q02748 GermOnline:CG9075
Uniprot:Q02748
Length = 403
Score = 362 (132.5 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 87/265 (32%), Positives = 139/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
V G D++ QA+SG GKTA F +A LQQ++T+ L++ TRELA QI + +Y
Sbjct: 65 VRGRDVIAQAQSGTGKTATFSIAILQQIDTSIRECQALILAPTRELATQIQRVVMALGEY 124
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M + GG +++D L++ +VVGTPGR+ ++ K L +K F+LDE D
Sbjct: 125 MK-VHSHACIGGTNVREDARILES-GCHVVVGTPGRVYDMINRKVLRTQYIKLFVLDEAD 182
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + +Q++F+ P QV++ SAT+ ++ V + FM DP+ + V E +LTL
Sbjct: 183 EMLSR-GFKDQIQDVFKMLPPDVQVILLSATMPPDVLEVSRCFMRDPVSILVKKE-ELTL 240
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q YV D L Q VIF + + L+ +S NF ++H
Sbjct: 241 EGIKQFYVNVKQENWKLGTLCDLYDTLSITQSVIFCNTRRKVDQLTQEMSIHNFTVSAMH 300
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q +R ++F+ + IT
Sbjct: 301 GDMEQRDREVIMKQFRSGSSRVLIT 325
Score = 151 (58.2 bits), Expect = 1.6e-10, Sum P(2) = 1.6e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 321 RVLITTDLLARGIDVQQVSLVINYDLPSNRENYIHRIGRGGRFGRKGV 368
Score = 67 (28.6 bits), Expect = 1.3e-38, Sum P(2) = 1.3e-38
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F +D+ D +IL +++ + +I E+P I DL
Sbjct: 366 KGVAINFITDD-DRRILKDIEQFYHTTIEEMPANIADL 402
>UNIPROTKB|Q3SZ65 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 KO:K03257
OrthoDB:EOG4640C1 EMBL:BC103106 IPI:IPI00711238
RefSeq:NP_001029216.1 UniGene:Bt.13925 ProteinModelPortal:Q3SZ65
SMR:Q3SZ65 STRING:Q3SZ65 PRIDE:Q3SZ65 Ensembl:ENSBTAT00000019596
GeneID:286819 KEGG:bta:286819 CTD:1974 InParanoid:Q3SZ65
OMA:TENDARQ NextBio:20806473 ArrayExpress:Q3SZ65 Uniprot:Q3SZ65
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>UNIPROTKB|E2R3J1 [details] [associations]
symbol:EIF4A2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:AAEX03017297 RefSeq:XP_860499.2 ProteinModelPortal:E2R3J1
SMR:E2R3J1 PRIDE:E2R3J1 Ensembl:ENSCAFT00000021683 GeneID:488118
KEGG:cfa:488118 NextBio:20861546 Uniprot:E2R3J1
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>UNIPROTKB|Q14240 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0004386
"helicase activity" evidence=TAS] [GO:0006446 "regulation of
translational initiation" evidence=TAS] [GO:0016281 "eukaryotic
translation initiation factor 4F complex" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0006446 GO:GO:0016281 EMBL:CH471052
GO:GO:0019221 GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 Reactome:REACT_1762 KO:K03257
CTD:1974 OMA:TENDARQ EMBL:D30655 EMBL:BT009860 EMBL:AC112907
EMBL:BC012547 EMBL:BC013708 EMBL:BC015842 EMBL:BC048105
IPI:IPI00328328 IPI:IPI00409717 RefSeq:NP_001958.2
UniGene:Hs.518475 UniGene:Hs.599481 PDB:3BOR PDBsum:3BOR
ProteinModelPortal:Q14240 SMR:Q14240 IntAct:Q14240 MINT:MINT-202114
STRING:Q14240 PhosphoSite:Q14240 DMDM:45645183 PaxDb:Q14240
PRIDE:Q14240 DNASU:1974 Ensembl:ENST00000323963
Ensembl:ENST00000440191 GeneID:1974 KEGG:hsa:1974 UCSC:uc003fqs.3
UCSC:uc003fqu.3 GeneCards:GC03P186539 H-InvDB:HIX0003899
HGNC:HGNC:3284 HPA:CAB011690 MIM:601102 neXtProt:NX_Q14240
PharmGKB:PA27712 InParanoid:Q14240 PhylomeDB:Q14240 ChiTaRS:EIF4A2
EvolutionaryTrace:Q14240 GenomeRNAi:1974 NextBio:7991
PMAP-CutDB:Q14240 ArrayExpress:Q14240 Bgee:Q14240 CleanEx:HS_EIF4A2
Genevestigator:Q14240 GermOnline:ENSG00000156976 Uniprot:Q14240
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>UNIPROTKB|A6M930 [details] [associations]
symbol:EIF4A2 "Eukaryotic translation initiation factor 4A
isoform 2" species:9823 "Sus scrofa" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 CTD:1974 OMA:TENDARQ
EMBL:CU633961 EMBL:DQ351285 RefSeq:NP_001093665.1 UniGene:Ssc.10843
ProteinModelPortal:A6M930 SMR:A6M930 PRIDE:A6M930
Ensembl:ENSSSCT00000012915 GeneID:100101928 KEGG:ssc:100101928
Uniprot:A6M930
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>MGI|MGI:106906 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:106906 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K03257 OrthoDB:EOG4640C1 CTD:1974
OMA:TENDARQ EMBL:X12507 EMBL:X14422 EMBL:X56953 EMBL:AK076509
EMBL:U64706 IPI:IPI00400432 IPI:IPI00409918 PIR:S00985
RefSeq:NP_038534.2 UniGene:Mm.260084 ProteinModelPortal:P10630
SMR:P10630 IntAct:P10630 STRING:P10630 PhosphoSite:P10630
PaxDb:P10630 PRIDE:P10630 Ensembl:ENSMUST00000023599
Ensembl:ENSMUST00000115341 GeneID:13682 KEGG:mmu:13682
NextBio:284442 Bgee:P10630 CleanEx:MM_EIF4A2 Genevestigator:P10630
GermOnline:ENSMUSG00000022884 Uniprot:P10630
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>RGD|1309225 [details] [associations]
symbol:Eif4a2 "eukaryotic translation initiation factor 4A2"
species:10116 "Rattus norvegicus" [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1309225 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 EMBL:BC085859 IPI:IPI00193595
RefSeq:NP_001008336.1 UniGene:Rn.143972 ProteinModelPortal:Q5RKI1
SMR:Q5RKI1 STRING:Q5RKI1 PhosphoSite:Q5RKI1
World-2DPAGE:0004:Q5RKI1 PRIDE:Q5RKI1 GeneID:303831 KEGG:rno:303831
UCSC:RGD:1309225 InParanoid:Q5RKI1 NextBio:652169
ArrayExpress:Q5RKI1 Genevestigator:Q5RKI1
GermOnline:ENSRNOG00000001815 Uniprot:Q5RKI1
Length = 407
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>UNIPROTKB|F8WFX2 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
OMA:TENDARQ IPI:IPI00193595 ProteinModelPortal:F8WFX2 PRIDE:F8WFX2
Ensembl:ENSRNOT00000002484 Uniprot:F8WFX2
Length = 408
Score = 361 (132.1 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 69 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 128
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 129 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 187
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 188 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 245
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 246 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 305
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 306 GDMDQKERDVIMREFRSGSSRVLIT 330
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 326 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 373
Score = 65 (27.9 bits), Expect = 2.8e-38, Sum P(2) = 2.8e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 371 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 407
>FB|FBgn0037573 [details] [associations]
symbol:eIF4AIII "eIF4AIII" species:7227 "Drosophila
melanogaster" [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=ISS] [GO:0003743 "translation initiation
factor activity" evidence=ISS] [GO:0006413 "translational
initiation" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0045495 "pole plasm" evidence=IDA] [GO:0045451 "pole plasm
oskar mRNA localization" evidence=IGI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IDA]
[GO:0071011 "precatalytic spliceosome" evidence=IDA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0008380 "RNA splicing"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016281
GO:GO:0006974 GO:GO:0003743 GO:GO:0071011 GO:GO:0000398
GO:GO:0071013 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0045451 GO:GO:0045495 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 ChiTaRS:EIF4A3
EMBL:AY089635 ProteinModelPortal:Q8SXH3 SMR:Q8SXH3 IntAct:Q8SXH3
STRING:Q8SXH3 PaxDb:Q8SXH3 PRIDE:Q8SXH3 FlyBase:FBgn0037573
InParanoid:Q8SXH3 OrthoDB:EOG4XWDD6 Bgee:Q8SXH3 Uniprot:Q8SXH3
Length = 399
Score = 362 (132.5 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 92/268 (34%), Positives = 138/268 (51%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T V G D++ QA+SG GKTA F ++ LQ L+TT VL + TRELA QI K
Sbjct: 58 TPIVKGRDVIAQAQSGTGKTATFSISILQSLDTTLRETQVLCLSPTRELAVQIQKVILAL 117
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
M N++ V GG + +D L + IV GTPGR+ +++ + L +K +LD
Sbjct: 118 GDMM-NVQCHVCIGGTNLGEDIRKLD-YGQHIVSGTPGRVFDMIKRRVLRTRAIKMLVLD 175
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
E D+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +
Sbjct: 176 EADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTSKFMTDPIRILVKRD-E 233
Query: 324 LTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
LTL G++Q +V D L Q VIF + + L+ + E NF
Sbjct: 234 LTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVS 293
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAIT 410
S+H M Q+ER + +EF+ + IT
Sbjct: 294 SMHGDMPQKERDEIMKEFRAGQSRVLIT 321
Score = 149 (57.5 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 317 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 364
Score = 60 (26.2 bits), Expect = 7.3e-38, Sum P(2) = 7.3e-38
Identities = 13/38 (34%), Positives = 22/38 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + D +IL +++ + I E+P + DL
Sbjct: 362 KGVAINFVKSD-DIRILRDIEQYYSTQIDEMPVNVADL 398
>UNIPROTKB|Q8JFP1 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 HSSP:P60842
KO:K03257 OrthoDB:EOG4640C1 CTD:1974 OMA:TENDARQ EMBL:AF515726
EMBL:AJ720280 IPI:IPI00588868 RefSeq:NP_989880.1 UniGene:Gga.4580
ProteinModelPortal:Q8JFP1 SMR:Q8JFP1 STRING:Q8JFP1 PRIDE:Q8JFP1
Ensembl:ENSGALT00000014135 Ensembl:ENSGALT00000039726 GeneID:395232
KEGG:gga:395232 InParanoid:Q8JFP1 NextBio:20815321
ArrayExpress:Q8JFP1 Uniprot:Q8JFP1
Length = 407
Score = 356 (130.4 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 87/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIDLKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ QV++ SAT+ ++ V KKFM +P+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLSTNIQVVLLSATMPMDVLEVTKKFMREPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
Score = 150 (57.9 bits), Expect = 3.5e-10, Sum P(2) = 3.5e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 325 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 372
Score = 65 (27.9 bits), Expect = 9.3e-38, Sum P(2) = 9.3e-38
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 370 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 406
>ZFIN|ZDB-GENE-040426-2802 [details] [associations]
symbol:eif4a2 "eukaryotic translation initiation
factor 4A, isoform 2" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-040426-2802 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00530000062880
EMBL:CT027646 EMBL:CU929049 IPI:IPI00507769
ProteinModelPortal:F1R166 Ensembl:ENSDART00000130781
ArrayExpress:F1R166 Bgee:F1R166 Uniprot:F1R166
Length = 411
Score = 354 (129.7 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 86/265 (32%), Positives = 136/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 72 IKGYDVIAQAQSGTGKTATFAISILQQLEIEQKETQALVLAPTRELAQQIQKVILALGDY 131
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 132 MG-ASCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ QV++ SAT+ ++ V KFM +P+ + V E +LTL
Sbjct: 191 EMLSR-GFKDQIYEIFQKLSTNIQVVLLSATMPADVLEVTTKFMREPVRILVKKE-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 249 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 309 GDMDQKERDIIMREFRSGSSRVLIT 333
Score = 150 (57.9 bits), Expect = 3.6e-10, Sum P(2) = 3.6e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 329 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 376
Score = 65 (27.9 bits), Expect = 1.5e-37, Sum P(2) = 1.5e-37
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 374 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 410
>CGD|CAL0006152 [details] [associations]
symbol:DHH1 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0030996 "cell cycle arrest
in response to nitrogen starvation" evidence=IEA] [GO:0034063
"stress granule assembly" evidence=IEA] [GO:0000753 "cell
morphogenesis involved in conjugation with cellular fusion"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0000290 "deadenylation-dependent
decapping of nuclear-transcribed mRNA" evidence=IEA] [GO:0031142
"induction of conjugation upon nitrogen starvation" evidence=IEA]
[GO:0003724 "RNA helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0006152 GO:GO:0005524 GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037 eggNOG:COG0513
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_718704.1
RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3 SMR:Q5AAW3
GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 343 (125.8 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 85/257 (33%), Positives = 133/257 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA F++ LQ ++ + V L++ TRELA Q S+ K
Sbjct: 64 ALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGK 123
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ + V GG ++ D ++ H+P I+VGTPGR+L L K ++LS F++DE
Sbjct: 124 HVGT-QCMVTTGGTSLRDD--IVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDE 180
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DKML + E + +++I P +Q ++FSAT ++ K + P E+ + DE L
Sbjct: 181 ADKMLSR-EFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLMDE--L 237
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q Y L+ NQ +IF S R L+ ++E +
Sbjct: 238 TLKGISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYS 297
Query: 385 HRGMTQEERLKKYQEFK 401
H M Q+ R K + EF+
Sbjct: 298 HAKMPQQARNKVFHEFR 314
Score = 144 (55.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 41/128 (32%), Positives = 71/128 (55%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC-QAKS 158
R LV ++L RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG L ++++ +
Sbjct: 319 RNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG-LAINLMSWNDRY 377
Query: 159 GMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
+ K + ++ + T D ++YV F+I E + ++ + N K G +
Sbjct: 378 SLYKIEQELGTEIKPIPATIDKSLYVAENADAVPRPFRID-ELPKGNETVHN-K-GYQYK 434
Query: 218 GLPIQKDE 225
G P+ KDE
Sbjct: 435 GQPV-KDE 441
Score = 58 (25.5 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H GLAI S ND L ++ I +P ID S Y+
Sbjct: 363 HLGLAINLMS-WNDRYSLYKIEQELGTEIKPIPATIDKSLYV 403
Score = 37 (18.1 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F DF LK E+L I +
Sbjct: 32 FEDFNLKRELLMGIFE 47
>UNIPROTKB|Q5AAW3 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:237561 "Candida albicans SC5314" [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0006152 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0010494 GO:GO:0008026 EMBL:AACQ01000038 EMBL:AACQ01000037
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
RefSeq:XP_718704.1 RefSeq:XP_718788.1 ProteinModelPortal:Q5AAW3
SMR:Q5AAW3 GeneID:3639490 GeneID:3639628 KEGG:cal:CaO19.13577
KEGG:cal:CaO19.6197 Uniprot:Q5AAW3
Length = 549
Score = 343 (125.8 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 85/257 (33%), Positives = 133/257 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA F++ LQ ++ + V L++ TRELA Q S+ K
Sbjct: 64 ALAGRDILARAKNGTGKTASFIIPCLQLVKPKLNKVQALILVPTRELALQTSQVVRTLGK 123
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ + V GG ++ D ++ H+P I+VGTPGR+L L K ++LS F++DE
Sbjct: 124 HVGT-QCMVTTGGTSLRDD--IVRLHDPVHILVGTPGRVLDLAARKVVDLSECPLFVMDE 180
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DKML + E + +++I P +Q ++FSAT ++ K + P E+ + DE L
Sbjct: 181 ADKMLSR-EFKGIIEQILEFFPPNRQALLFSATFPLAVKSFMDKHLTKPYEINLMDE--L 237
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q Y L+ NQ +IF S R L+ ++E +
Sbjct: 238 TLKGISQFYAFVEEKQKLHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCYYS 297
Query: 385 HRGMTQEERLKKYQEFK 401
H M Q+ R K + EF+
Sbjct: 298 HAKMPQQARNKVFHEFR 314
Score = 144 (55.7 bits), Expect = 3.5e-06, Sum P(2) = 3.5e-06
Identities = 41/128 (32%), Positives = 71/128 (55%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILC-QAKS 158
R LV ++L RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG L ++++ +
Sbjct: 319 RNLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLG-LAINLMSWNDRY 377
Query: 159 GMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFG 217
+ K + ++ + T D ++YV F+I E + ++ + N K G +
Sbjct: 378 SLYKIEQELGTEIKPIPATIDKSLYVAENADAVPRPFRID-ELPKGNETVHN-K-GYQYK 434
Query: 218 GLPIQKDE 225
G P+ KDE
Sbjct: 435 GQPV-KDE 441
Score = 58 (25.5 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H GLAI S ND L ++ I +P ID S Y+
Sbjct: 363 HLGLAINLMS-WNDRYSLYKIEQELGTEIKPIPATIDKSLYV 403
Score = 37 (18.1 bits), Expect = 2.8e-37, Sum P(3) = 2.8e-37
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F DF LK E+L I +
Sbjct: 32 FEDFNLKRELLMGIFE 47
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 88/254 (34%), Positives = 135/254 (53%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M
Sbjct: 59 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM- 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+M
Sbjct: 118 DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + +IF P T QV++ SAT+ ++ V KFM +P+ + V + +LTL G
Sbjct: 176 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEG 233
Query: 329 LQQHYVXXXXXXXXXX-XXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV D + Q VIF + + L+T L F +I+
Sbjct: 234 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 293
Query: 388 MTQEERLKKYQEFK 401
+ Q+ER +EF+
Sbjct: 294 LPQQERDTIMKEFR 307
Score = 153 (58.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 359
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++E D + ++ + I ELP +I
Sbjct: 357 KGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 390
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 88/254 (34%), Positives = 135/254 (53%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M
Sbjct: 59 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHM- 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+IKV GG +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+M
Sbjct: 118 DIKVHACIGGTSFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + +IF P T QV++ SAT+ ++ V KFM +P+ + V + +LTL G
Sbjct: 176 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILVKKD-ELTLEG 233
Query: 329 LQQHYVXXXXXXXXXX-XXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV D + Q VIF + + L+T L F +I+
Sbjct: 234 IKQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSD 293
Query: 388 MTQEERLKKYQEFK 401
+ Q+ER +EF+
Sbjct: 294 LPQQERDTIMKEFR 307
Score = 153 (58.9 bits), Expect = 9.4e-10, Sum P(2) = 9.4e-10
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL++T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 312 RILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRFGRKGV 359
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 12/35 (34%), Positives = 20/35 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++E D + ++ + I ELP +I
Sbjct: 357 KGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDI 390
>UNIPROTKB|Q3SZ54 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9913 "Bos taurus" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003743 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 GeneTree:ENSGT00530000062880 EMBL:BC103130
IPI:IPI00698793 RefSeq:NP_001029400.1 UniGene:Bt.14169
ProteinModelPortal:Q3SZ54 SMR:Q3SZ54 STRING:Q3SZ54 PRIDE:Q3SZ54
Ensembl:ENSBTAT00000000144 GeneID:504958 KEGG:bta:504958 CTD:1973
InParanoid:Q3SZ54 KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1
NextBio:20866906 Uniprot:Q3SZ54
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|F1P895 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 OMA:PILEMED EMBL:AAEX03003619
EMBL:AAEX03003621 EMBL:AAEX03003620 Ensembl:ENSCAFT00000026357
Uniprot:F1P895
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|J9NU36 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00530000062880 EMBL:AAEX03006506
EMBL:AAEX03006505 Ensembl:ENSCAFT00000049437 Uniprot:J9NU36
Length = 423
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 84 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 143
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 144 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 202
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 203 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 260
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 261 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 320
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 321 GDMDQKERDVIMREFRSGSSRVLIT 345
Score = 150 (57.9 bits), Expect = 2.7e-09, Sum P(2) = 2.7e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 341 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 388
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 386 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 416
>UNIPROTKB|J9NY67 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
EMBL:AAEX03006506 EMBL:AAEX03006505 RefSeq:NP_001238871.1
ProteinModelPortal:J9NY67 Ensembl:ENSCAFT00000014379
GeneID:100688577 KEGG:cfa:100688577 Uniprot:J9NY67
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|P60842 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003729
"mRNA binding" evidence=TAS] [GO:0004386 "helicase activity"
evidence=TAS] [GO:0000339 "RNA cap binding" evidence=TAS]
[GO:0008135 "translation factor activity, nucleic acid binding"
evidence=TAS] [GO:0016281 "eukaryotic translation initiation factor
4F complex" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000288 "nuclear-transcribed mRNA catabolic
process, deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019221 "cytokine-mediated signaling
pathway" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
Reactome:REACT_6900 EMBL:CH471108 GO:GO:0019048
Pathway_Interaction_DB:mtor_4pathway GO:GO:0006413 GO:GO:0016281
GO:GO:0031100 GO:GO:0003729 GO:GO:0019221 GO:GO:0008135
GO:GO:0004386 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0000289 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 Reactome:REACT_1762 CTD:1973 KO:K03257
OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:D13748 EMBL:BT019880
EMBL:BT019881 EMBL:AK312630 EMBL:AC016876 EMBL:BC006210
EMBL:BC009585 EMBL:BC073752 IPI:IPI00025491 PIR:S33681
RefSeq:NP_001191439.1 RefSeq:NP_001407.1 UniGene:Hs.129673 PDB:2G9N
PDB:2ZU6 PDB:3EIQ PDBsum:2G9N PDBsum:2ZU6 PDBsum:3EIQ
ProteinModelPortal:P60842 SMR:P60842 DIP:DIP-29755N IntAct:P60842
MINT:MINT-5001111 STRING:P60842 PhosphoSite:P60842 DMDM:46397463
PaxDb:P60842 PRIDE:P60842 DNASU:1973 Ensembl:ENST00000293831
Ensembl:ENST00000577269 GeneID:1973 KEGG:hsa:1973 UCSC:uc002gho.2
GeneCards:GC17P007476 HGNC:HGNC:3282 HPA:CAB011689 MIM:602641
neXtProt:NX_P60842 PharmGKB:PA27710 PhylomeDB:P60842 ChiTaRS:EIF4A1
EvolutionaryTrace:P60842 GenomeRNAi:1973 NextBio:7987
ArrayExpress:P60842 Bgee:P60842 CleanEx:HS_EIF4A1
Genevestigator:P60842 GermOnline:ENSG00000161960 GO:GO:0000339
Uniprot:P60842
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|A6M928 [details] [associations]
symbol:EIF4A1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:CU914279 EMBL:DQ351283 RefSeq:NP_001093666.1
UniGene:Ssc.22034 ProteinModelPortal:A6M928 SMR:A6M928 PRIDE:A6M928
Ensembl:ENSSSCT00000019541 GeneID:100101929 KEGG:ssc:100101929
Uniprot:A6M928
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>MGI|MGI:95303 [details] [associations]
symbol:Eif4a1 "eukaryotic translation initiation factor 4A1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:95303 GO:GO:0005524
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989 CTD:1973
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:X03039 EMBL:X03040
EMBL:L36611 EMBL:M22873 EMBL:L36608 EMBL:L36609 EMBL:L36610
EMBL:AB011595 EMBL:AK077429 EMBL:BC049915 IPI:IPI00118676
PIR:JS0039 RefSeq:NP_659207.1 UniGene:Mm.279821 UniGene:Mm.371557
UniGene:Mm.473799 ProteinModelPortal:P60843 SMR:P60843
MINT:MINT-202155 STRING:P60843 PhosphoSite:P60843
REPRODUCTION-2DPAGE:P60843 PaxDb:P60843 PRIDE:P60843
Ensembl:ENSMUST00000163666 GeneID:13681 KEGG:mmu:13681
InParanoid:P60843 NextBio:284438 Bgee:P60843 CleanEx:MM_EIF4A1
Genevestigator:P60843 GermOnline:ENSMUSG00000064241 Uniprot:P60843
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>UNIPROTKB|Q6P3V8 [details] [associations]
symbol:Eif4a1 "Protein Eif4a1" species:10116 "Rattus
norvegicus" [GO:0003743 "translation initiation factor activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:735141
GO:GO:0005524 GO:GO:0003743 EMBL:CH473948 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 CTD:1973 KO:K03257 OMA:IKMFILD
OrthoDB:EOG4640C1 EMBL:BC063812 IPI:IPI00369618 RefSeq:NP_955404.1
UniGene:Rn.91523 SMR:Q6P3V8 STRING:Q6P3V8
Ensembl:ENSRNOT00000049048 GeneID:287436 KEGG:rno:287436
InParanoid:Q6P3V8 NextBio:626135 Genevestigator:Q6P3V8
Uniprot:Q6P3V8
Length = 406
Score = 357 (130.7 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 57 (25.1 bits), Expect = 5.1e-37, Sum P(2) = 5.1e-37
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 369 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 399
>GENEDB_PFALCIPARUM|PFC0915w [details] [associations]
symbol:PFC0915w "ATP-dependent RNA helicase,
putative" species:5833 "Plasmodium falciparum" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006200 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844502 HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
ProtClustDB:CLSZ2429504 RefSeq:XP_001351278.1
ProteinModelPortal:O97285 SMR:O97285 EnsemblProtists:PFC0915w:mRNA
GeneID:814522 KEGG:pfa:PFC0915w EuPathDB:PlasmoDB:PF3D7_0320800
Uniprot:O97285
Length = 433
Score = 331 (121.6 bits), Expect = 8.6e-37, Sum P(3) = 8.6e-37
Identities = 82/258 (31%), Positives = 136/258 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G +IL +AK+G GKTA F + L++ T + + L++ TRELA Q S + K
Sbjct: 94 ALAGKNILARAKNGTGKTAAFAIPLLEKCNTHKNFIQGLILVPTRELALQTSAMIKELGK 153
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+M ++ V GG +++D ++ +N I+ GTPGRIL L NLS ++DE
Sbjct: 154 HMK-VQCMVTTGGTSLRED--IMRLYNVVHILCGTPGRILDLANKDVANLSGCHIMVMDE 210
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L E + V+E+ + P KQ++M+SAT ++ ++ D E+ + DE L
Sbjct: 211 ADKLLSP-EFQPIVEELMKFLPKEKQILMYSATFPVTVKEFRAIYLSDAHEINLMDE--L 267
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF S+TR L+ ++E + + I
Sbjct: 268 TLKGITQYYAFVKERQKVHCLNTLFAKLQINQAIIFCNSITRVELLAKKITELGYSSFYI 327
Query: 385 HRGMTQEERLKKYQEFKD 402
H M+Q R + + +F++
Sbjct: 328 HARMSQTHRNRVFHDFRN 345
Score = 151 (58.2 bits), Expect = 3.6e-09, Sum P(3) = 3.6e-09
Identities = 25/44 (56%), Positives = 38/44 (86%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV+++LF RG+DI+ VN+V N+D P++S+TYLHR+ R+GR+G
Sbjct: 349 RCLVSSDLFTRGIDIQSVNVVINFDFPKNSETYLHRIGRSGRYG 392
Score = 54 (24.1 bits), Expect = 8.6e-37, Sum P(3) = 8.6e-37
Identities = 15/41 (36%), Positives = 20/41 (48%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTY 444
H GLAI + E D L ++ I +P+EID S Y
Sbjct: 393 HLGLAINLITFE-DRFNLYKIEVELGTEIQPIPNEIDPSLY 432
Score = 37 (18.1 bits), Expect = 8.6e-37, Sum P(3) = 8.6e-37
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F D+ LK E+L I +
Sbjct: 62 FEDYFLKRELLMGIFE 77
>DICTYBASE|DDB_G0269192 [details] [associations]
symbol:tifA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003743
"translation initiation factor activity" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0044351 "macropinocytosis" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 dictyBase:DDB_G0269192 GO:GO:0005524 GO:GO:0005737
EMBL:AAFI02000005 GenomeReviews:CM000150_GR GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
KO:K13025 OMA:LALGDFM RefSeq:XP_646270.1 ProteinModelPortal:Q55D61
SMR:Q55D61 PRIDE:Q55D61 EnsemblProtists:DDB0191511 GeneID:8617226
KEGG:ddi:DDB_G0269192 Uniprot:Q55D61
Length = 405
Score = 351 (128.6 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 88/265 (33%), Positives = 142/265 (53%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D + QA+SG GKTA F + LQ +E + VL++ TRELA QI K S++
Sbjct: 67 IKGRDTIAQAQSGTGKTATFSIGALQCVEVNVRSPQVLILSPTRELAQQIQKVALALSEF 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M NI+V GG + D + L+T IV GTPGR+L ++ K L +K ILDE D
Sbjct: 127 M-NIQVHACVGGKNLSDDVKKLET-GVHIVSGTPGRVLDMITRKSLPTRHIKMMILDEAD 184
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML L ++ + +++R P+ Q+++ SATL++++ + +KFM P+ + + + +LTL
Sbjct: 185 EMLS-LGFQQQINDVYRYLPNGTQIVLVSATLTQDVVSMTEKFMTKPVRILLKRD-ELTL 242
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + + NF S+H
Sbjct: 243 DGIKQFFVSVEKEDWKFGTLCDIYDSLTITQAVIFCNTKKKVDQLTEQMRDANFTVASMH 302
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER + + F+ + IT
Sbjct: 303 GDMVQKEREEIIKSFRSGENRVLIT 327
Score = 152 (58.6 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 23/48 (47%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T++ RG+D+++V++V NYD+P D + Y+HR+ R+GRFG K V
Sbjct: 323 RVLITTDILARGIDVQQVSLVINYDLPIDRENYIHRIGRSGRFGRKGV 370
Score = 58 (25.5 bits), Expect = 1.7e-36, Sum P(2) = 1.7e-36
Identities = 11/32 (34%), Positives = 20/32 (62%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI F + +D +IL +++ + I E+P
Sbjct: 368 KGVAINFVKN-SDIRILRDIEQFYSTQIDEMP 398
>UNIPROTKB|A4QVP2 [details] [associations]
symbol:TIF1 "ATP-dependent RNA helicase eIF4A"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003743 EMBL:CM001231 GO:GO:0043581 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OrthoDB:EOG4PG98F
RefSeq:XP_003711015.1 ProteinModelPortal:A4QVP2 SMR:A4QVP2
EnsemblFungi:MGG_04400T0 GeneID:2677872 KEGG:mgr:MGG_04400
Uniprot:A4QVP2
Length = 396
Score = 355 (130.0 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 82/256 (32%), Positives = 139/256 (54%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQ+++T L++ TRELA QI K +
Sbjct: 58 IKGHDVIAQAQSGTGKTATFSISVLQKIDTNVKQCQALILAPTRELAQQIQKVVVAIGDF 117
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M NI+ GG ++ D + L+ PQ+VVGTPGR+ +++ + L +K F+LDE D
Sbjct: 118 M-NIECHACIGGTSVRDDMKALQD-GPQVVVGTPGRVHDMIQRRFLKTDGMKMFVLDEAD 175
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + +IF+ P + QV++ SAT+ +++ V KFM DP+ + V + +LTL
Sbjct: 176 EMLSR-GFTEQIYDIFQLLPQSTQVVLLSATMPQDVLEVTTKFMRDPVRILVKKD-ELTL 233
Query: 327 HGLQQHYVXXXXXX-XXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + + Q VIF + + L+ L+ ++F ++H
Sbjct: 234 EGIKQFYIAVEKEEWKLDTLSDLYETVTITQAVIFCNTRRKVDWLTDKLTARDFTVSAMH 293
Query: 386 RGMTQEERLKKYQEFK 401
M Q +R +EF+
Sbjct: 294 GDMDQAQRDLIMKEFR 309
Score = 154 (59.3 bits), Expect = 1.9e-09, Sum P(2) = 1.9e-09
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+AT+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 314 RVLIATDLLARGIDVQQVSLVINYDLPANRENYIHRIGRGGRFGRKGV 361
Score = 53 (23.7 bits), Expect = 2.2e-36, Sum P(2) = 2.2e-36
Identities = 11/38 (28%), Positives = 22/38 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + + D +++ ++ + I E+P + DL
Sbjct: 359 KGVAINFVTAD-DVRMMREIEQFYSTQIEEMPMNVADL 395
>TAIR|locus:2127043 [details] [associations]
symbol:RH8 "RNAhelicase-like 8" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016032 "viral reproduction" evidence=IMP] [GO:0019048
"virus-host interaction" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0019048 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0006417
GO:GO:0006397 GO:GO:0003723 EMBL:AF058919 EMBL:AL161472
GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 InterPro:IPR014014 PROSITE:PS51195 OMA:QFMEKHL
ProtClustDB:CLSN2683443 EMBL:AJ010460 EMBL:AY080837 EMBL:AY113985
IPI:IPI00531108 PIR:T01230 PIR:T51741 RefSeq:NP_191975.2
RefSeq:NP_849535.1 UniGene:At.25593 UniGene:At.67100
UniGene:At.71300 ProteinModelPortal:Q8RXK6 SMR:Q8RXK6 STRING:Q8RXK6
PaxDb:Q8RXK6 PRIDE:Q8RXK6 EnsemblPlants:AT4G00660.1
EnsemblPlants:AT4G00660.2 GeneID:828042 KEGG:ath:AT4G00660
GeneFarm:919 TAIR:At4g00660 InParanoid:Q8RXK6 PhylomeDB:Q8RXK6
Genevestigator:Q8RXK6 GermOnline:AT4G00660 Uniprot:Q8RXK6
Length = 505
Score = 335 (123.0 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 80/258 (31%), Positives = 137/258 (53%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA F + L++++ ++ + +++ TRELA Q S+ + K
Sbjct: 165 ALTGRDILARAKNGTGKTAAFCIPVLEKIDQDNNVIQAVIIVPTRELALQTSQVCKELGK 224
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ I+V V GG ++ D ++ + P ++VGTPGRIL L + L ++DE
Sbjct: 225 HLK-IQVMVTTGGTSLKDD--IMRLYQPVHLLVGTPGRILDLTKKGVCVLKDCSVLVMDE 281
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L Q E + V+ + P ++Q++MFSAT ++ +F+ +P + + DE L
Sbjct: 282 ADKLLSQ-EFQPSVEHLISFLPESRQILMFSATFPVTVKDFKDRFLTNPYVINLMDE--L 338
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q Y L+ NQ +IF SV R L+ ++E + I
Sbjct: 339 TLKGITQFYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 398
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q+ R + + +F++
Sbjct: 399 HAKMLQDHRNRVFHDFRN 416
Score = 153 (58.9 bits), Expect = 9.2e-09, Sum P(3) = 9.2e-09
Identities = 27/44 (61%), Positives = 37/44 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P++++TYLHRV R+GRFG
Sbjct: 420 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRVGRSGRFG 463
Score = 51 (23.0 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 12/43 (27%), Positives = 20/43 (46%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
H GLA+ + E D L ++ I ++P ID + Y +
Sbjct: 464 HLGLAVNLITYE-DRFNLYRIEQELGTEIKQIPPHIDQAIYCQ 505
Score = 37 (18.1 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 7/16 (43%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F D+ LK E+L I +
Sbjct: 133 FEDYFLKRELLMGIYE 148
>SGD|S000002428 [details] [associations]
symbol:FAL1 "Nucleolar protein required for maturation of 18S
rRNA" species:4932 "Saccharomyces cerevisiae" [GO:0005730
"nucleolus" evidence=IEA;IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IMP]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0097078 "FAl1-SGD1 complex" evidence=IPI] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 SGD:S000002428 GO:GO:0005524
GO:GO:0005730 EMBL:BK006938 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 EMBL:X95966
EMBL:Z49770 GeneTree:ENSGT00680000100003 GO:GO:0000462 KO:K13025
OrthoDB:EOG4HTD1W EMBL:Z74317 EMBL:AY723767 PIR:S54644
RefSeq:NP_010304.3 RefSeq:NP_010309.3 ProteinModelPortal:Q12099
SMR:Q12099 DIP:DIP-4516N IntAct:Q12099 MINT:MINT-503789
STRING:Q12099 PaxDb:Q12099 PeptideAtlas:Q12099 EnsemblFungi:YDR021W
GeneID:851584 GeneID:851590 KEGG:sce:YDR021W KEGG:sce:YDR026C
CYGD:YDR021w KO:K09424 OMA:IFGKQPF NextBio:969055
Genevestigator:Q12099 GermOnline:YDR021W GO:GO:0097078
Uniprot:Q12099
Length = 399
Score = 390 (142.3 bits), Expect = 3.5e-36, P = 3.5e-36
Identities = 89/269 (33%), Positives = 148/269 (55%)
Query: 144 TKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERF 203
T+ + G D++ QA+SG GKTA F + LQ ++ ++ L++ TRELA QI + +
Sbjct: 55 TQIISGKDVIAQAQSGTGKTATFTIGLLQAIDLRKKDLQALILSPTRELASQIGQVVKNL 114
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
YM N+ GG ++ D + ++ H Q V GTPGR+L +++ + L ++ +LD
Sbjct: 115 GDYM-NVNAFAITGGKTLKDDLKKMQKHGCQAVSGTPGRVLDMIKKQMLQTRNVQMLVLD 173
Query: 264 ECDKML-EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D++L E L ++ + +IF P QV++ SAT++K+I V +KFM+DP+++ V +
Sbjct: 174 EADELLSETLGFKQQIYDIFAKLPKNCQVVVVSATMNKDILEVTRKFMNDPVKILVKRD- 232
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+++L G++Q+ V D L Q VIF + + LS L + NF
Sbjct: 233 EISLEGIKQYVVNVDKEEWKFDTLCDIYDSLTITQCVIFCNTKKKVDWLSQRLIQSNFAV 292
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
VS+H M QEER K +F+ H + I+
Sbjct: 293 VSMHGDMKQEERDKVMNDFRTGHSRVLIS 321
Score = 151 (58.2 bits), Expect = 8.5e-08, P = 8.5e-08
Identities = 23/48 (47%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+PE + Y+HR+ R+GRFG K V
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPEIIENYIHRIGRSGRFGRKGV 364
>ZFIN|ZDB-GENE-031030-2 [details] [associations]
symbol:eif4a1a "eukaryotic translation initiation
factor 4A, isoform 1A" species:7955 "Danio rerio" [GO:0004386
"helicase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003743 "translation
initiation factor activity" evidence=IEA] [GO:0006413
"translational initiation" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-2 GO:GO:0005524 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG107989 HSSP:P10081 GeneTree:ENSGT00530000062880
KO:K03257 OMA:IKMFILD OrthoDB:EOG4640C1 EMBL:CR848032 EMBL:BC048899
IPI:IPI00502344 RefSeq:NP_938180.1 UniGene:Dr.75120 SMR:Q802C9
STRING:Q802C9 Ensembl:ENSDART00000058913 GeneID:386634
KEGG:dre:386634 CTD:386634 InParanoid:Q802C9 NextBio:20813962
Uniprot:Q802C9
Length = 406
Score = 353 (129.3 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 86/265 (32%), Positives = 136/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ++ +V+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIDVELKATQAMVLAPTRELAQQIQKVVLALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ D + L+ P IVVGTPGR+ ++ + L+ +K F LDE D
Sbjct: 127 MG-ATCHACIGGTNVRNDVQKLQADVPHIVVGTPGRVFDMLNRRYLSPKYIKMFALDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ QV++ SAT+ +E+ V KFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYEIFQKLATDTQVILLSATMPQEVLEVTTKFMRDPVRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMEQKERDVIMKEFRSGSSRVLIT 328
Score = 150 (57.9 bits), Expect = 7.6e-09, Sum P(2) = 7.6e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 324 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 371
Score = 52 (23.4 bits), Expect = 4.4e-36, Sum P(2) = 4.4e-36
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI + E+D + L +++ ++ ++ E+P + DL
Sbjct: 369 KGVAINMIT-EDDKRTLRDIETFYNTTVEEMPMNVADL 405
>UNIPROTKB|A4R715 [details] [associations]
symbol:DHH1 "ATP-dependent RNA helicase DHH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0006417 GO:GO:0006397 GO:GO:0003723 GO:GO:0000932
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001234 GO:GO:0008026 eggNOG:COG0513 KO:K12614
InterPro:IPR014014 PROSITE:PS51195 RefSeq:XP_003716556.1
GeneID:2676879 KEGG:mgr:MGG_03388 OrthoDB:EOG4QJVWF Uniprot:A4R715
Length = 535
Score = 351 (128.6 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
Identities = 88/258 (34%), Positives = 135/258 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA FV+ L+ + S + L++ TRELA Q S+ + K
Sbjct: 81 ALTGRDILARAKNGTGKTAAFVVPALETINPKVSKIQCLILVPTRELAMQTSQVCKTLGK 140
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ I V V GG ++ D L+ +P IVVGTPGRIL L +LS FI+DE
Sbjct: 141 HLG-INVMVTTGGTTLRDD--ILRLQDPVHIVVGTPGRILDLAGKNVADLSECPMFIMDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L +E ++++ + P +QVM+FSAT ++ K M +P E+ + DE L
Sbjct: 198 ADKLLS-IEFTPVIEQLLQFHPKDRQVMLFSATFPISVKEFSDKNMTNPYEINLMDE--L 254
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF S R L+ ++E +
Sbjct: 255 TLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYS 314
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q+ R + + +F++
Sbjct: 315 HAKMQQQARNRVFHDFRN 332
Score = 139 (54.0 bits), Expect = 8.2e-08, Sum P(2) = 8.2e-08
Identities = 23/44 (52%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV ++L RG+DI+ VN+V N+D P++++TYLHR+ R+GR+G
Sbjct: 336 RNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYG 379
Score = 58 (25.5 bits), Expect = 5.2e-36, Sum P(2) = 5.2e-36
Identities = 16/42 (38%), Positives = 20/42 (47%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H GLAI S E D L N++ I +P ID S Y+
Sbjct: 380 HLGLAINLISWE-DRFNLYNIERDLGTEIQPIPSTIDKSLYV 420
>ZFIN|ZDB-GENE-040120-6 [details] [associations]
symbol:eif4a1b "eukaryotic translation initiation
factor 4A, isoform 1B" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0006413 "translational initiation" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040120-6 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG107989 OrthoDB:EOG4640C1 EMBL:BC153507
IPI:IPI00509685 UniGene:Dr.104803 ProteinModelPortal:A8E590
SMR:A8E590 STRING:A8E590 ArrayExpress:A8E590 Uniprot:A8E590
Length = 429
Score = 351 (128.6 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ++ LV+ TRELA QI K Y
Sbjct: 90 IKGYDVIAQAQSGTGKTATFAISILQQIDIELKGTQALVLAPTRELAQQIQKVILALGDY 149
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ K L+ +K F+LDE D
Sbjct: 150 MG-ATCHACIGGTNVRNEVQKLQAEAPHIVVGTPGRVYDMLNRKFLSSKYIKMFVLDEAD 208
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ E+ V KFM +P+ + V E +LTL
Sbjct: 209 EMLSR-GFKDQIYEIFQKLSTSIQVVLLSATMPAEVLDVTTKFMREPVRILVKKE-ELTL 266
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 267 EGIRQFYINVEKEEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSALH 326
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q++R +EF+ + IT
Sbjct: 327 GDMDQKDRDLIMREFRSGSSRVLIT 351
Score = 150 (57.9 bits), Expect = 7.4e-09, Sum P(2) = 7.4e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 347 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 394
Score = 53 (23.7 bits), Expect = 5.7e-36, Sum P(2) = 5.7e-36
Identities = 11/38 (28%), Positives = 24/38 (63%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI + E+D + L +++ ++ ++ E+P + DL
Sbjct: 392 KGVAINMVT-EDDKRTLRDIETFYNTTVEEMPMNVADL 428
>POMBASE|SPBC776.09 [details] [associations]
symbol:ste13 "ATP-dependent RNA helicase Ste13"
species:4896 "Schizosaccharomyces pombe" [GO:0000290
"deadenylation-dependent decapping of nuclear-transcribed mRNA"
evidence=ISO] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0030996 "cell cycle arrest in response to
nitrogen starvation" evidence=IMP] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IMP] [GO:0051028
"mRNA transport" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 PomBase:SPBC776.09
GO:GO:0005524 GO:GO:0006417 EMBL:CU329671 GO:GO:0006397
GenomeReviews:CU329671_GR GO:GO:0003723 GO:GO:0000932 GO:GO:0051028
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0031142 eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 GO:GO:0000290
OrthoDB:EOG4QJVWF EMBL:D29795 PIR:S46654 RefSeq:NP_596324.1
ProteinModelPortal:Q09181 SMR:Q09181 STRING:Q09181 PRIDE:Q09181
EnsemblFungi:SPBC776.09.1 GeneID:2541216 KEGG:spo:SPBC776.09
NextBio:20802328 GO:GO:0030996 Uniprot:Q09181
Length = 485
Score = 340 (124.7 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 83/257 (32%), Positives = 132/257 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA FV+ +L++++T S + L++ TRELA Q S+ + K
Sbjct: 78 ALSGRDILARAKNGTGKTAAFVIPSLEKVDTKKSKIQTLILVPTRELALQTSQVCKTLGK 137
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M N+KV V GG ++ D L IVVGTPGR+L L + S F++DE
Sbjct: 138 HM-NVKVMVTTGGTTLRDDIIRLND-TVHIVVGTPGRVLDLAGKGVADFSECTTFVMDEA 195
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L E ++++ P +Q+ ++SAT ++ K ++ P E+ + DE LT
Sbjct: 196 DKLLSP-EFTPIIEQLLSYFPKNRQISLYSATFPLIVKNFMDKHLNKPYEINLMDE--LT 252
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ ++E + H
Sbjct: 253 LRGVTQYYAFVDESQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYSH 312
Query: 386 RGMTQEERLKKYQEFKD 402
M Q R + + F++
Sbjct: 313 AKMLQSHRNRVFHNFRN 329
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 24/48 (50%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R LV ++L RG+DI+ VN+V N+D P++++TYLHR+ R+GRFG + +
Sbjct: 333 RNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHRGL 380
Score = 61 (26.5 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 15/42 (35%), Positives = 22/42 (52%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H+GLAI+F S D L +++ I +P ID S Y+
Sbjct: 377 HRGLAISFISWA-DRFNLYRIENELGTEIQPIPPSIDPSLYV 417
>TAIR|locus:2091191 [details] [associations]
symbol:EIF4A-III "eukaryotic initiation factor 4A-III"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM;IDA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0016020 "membrane" evidence=IDA] [GO:0001666 "response to
hypoxia" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] [GO:0006397 "mRNA
processing" evidence=IPI] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0035145 "exon-exon junction complex" evidence=IDA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0005730 GO:GO:0016020
GO:GO:0016607 GO:GO:0001666 GO:GO:0006397 GO:GO:0003723
EMBL:AP000417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 GO:GO:0035145 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K13025
OMA:EDWKFDT EMBL:AJ010456 EMBL:AY050367 EMBL:BT002207
IPI:IPI00522986 PIR:T51737 RefSeq:NP_188610.1 UniGene:At.22577
ProteinModelPortal:Q94A52 SMR:Q94A52 STRING:Q94A52 PaxDb:Q94A52
PRIDE:Q94A52 EnsemblPlants:AT3G19760.1 GeneID:821513
KEGG:ath:AT3G19760 GeneFarm:908 TAIR:At3g19760 InParanoid:Q94A52
PhylomeDB:Q94A52 ProtClustDB:CLSN2915442 Genevestigator:Q94A52
GermOnline:AT3G19760 Uniprot:Q94A52
Length = 408
Score = 338 (124.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 84/263 (31%), Positives = 134/263 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKT++ L+ Q ++T+ V L++ TRELA Q K + + +
Sbjct: 72 GRDVIAQAQSGTGKTSMIALSVCQVVDTSSREVQALILSPTRELATQTEKTIQAIGLH-A 130
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NI+ GG + +D L+ H +V GTPGR+ +++ + L +K ILDE D+M
Sbjct: 131 NIQAHACIGGNSVGEDIRKLE-HGVHVVSGTPGRVCDMIKRRSLRTRAIKLLILDESDEM 189
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +++R P QV + SATL EI + KFM +P+++ V + +LTL G
Sbjct: 190 LSR-GFKDQIYDVYRYLPPDLQVCLVSATLPHEILEMTSKFMTEPVKILVKRD-ELTLEG 247
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +V D L Q VIF + + LS + NF S+H
Sbjct: 248 IKQFFVAVEKEEWKFDTLCDLYDTLTITQAVIFCNTKRKVDYLSEKMRSHNFTVSSMHGD 307
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER EF+ + IT
Sbjct: 308 MPQKERDAIMNEFRSGDSRVLIT 330
Score = 149 (57.5 bits), Expect = 7.5e-10, Sum P(2) = 7.5e-10
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 326 RVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFGRKGV 373
Score = 63 (27.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + D KIL +++ + I E+P + DL
Sbjct: 371 KGVAINFVKSD-DIKILRDIEQYYSTQIDEMPMNVADL 407
>TAIR|locus:2030285 [details] [associations]
symbol:AT1G72730 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009505
"plant-type cell wall" evidence=IDA] [GO:0005774 "vacuolar
membrane" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0009744 "response
to sucrose stimulus" evidence=RCA] [GO:0009749 "response to glucose
stimulus" evidence=RCA] [GO:0009750 "response to fructose stimulus"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005524 GO:GO:0005774
GO:GO:0009505 GO:GO:0003743 EMBL:AC010926 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 KO:K03257
ProtClustDB:CLSN2679594 EMBL:AJ010472 EMBL:AY060592 EMBL:AY142066
EMBL:AY088176 IPI:IPI00526542 PIR:B96752 PIR:T51347
RefSeq:NP_177417.1 UniGene:At.22983 ProteinModelPortal:Q9CAI7
SMR:Q9CAI7 IntAct:Q9CAI7 STRING:Q9CAI7 PaxDb:Q9CAI7 PRIDE:Q9CAI7
EnsemblPlants:AT1G72730.1 GeneID:843605 KEGG:ath:AT1G72730
GeneFarm:940 TAIR:At1g72730 InParanoid:Q9CAI7 OMA:AVINYHI
PhylomeDB:Q9CAI7 Genevestigator:Q9CAI7 GermOnline:AT1G72730
Uniprot:Q9CAI7
Length = 414
Score = 338 (124.0 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 86/263 (32%), Positives = 135/263 (51%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA+SG GKTA F LQQL+ + LV+ TRELA QI K Y+
Sbjct: 78 GLDVIQQAQSGTGKTATFCSGVLQQLDISLVQCQALVLAPTRELAQQIEKVMRALGDYLG 137
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+K GG +++D+ L++ +VVGTPGR+ L+R + L +K F+LDE D+M
Sbjct: 138 -VKAQACVGGTSVREDQRVLQS-GVHVVVGTPGRVFDLLRRQSLRADAIKMFVLDEADEM 195
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +IF+ P QV +FSAT+ E + +KFM+ P+ + V + +LTL G
Sbjct: 196 LSR-GFKDQIYDIFQLLPSKVQVGVFSATMPPEALEITRKFMNKPVRILVKRD-ELTLEG 253
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV + L Q VIFV + + L+ + ++ + H
Sbjct: 254 IKQFYVNVDKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 313
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q R +EF+ + IT
Sbjct: 314 MDQNTRDIIMREFRSGSSRVLIT 336
Score = 148 (57.2 bits), Expect = 1.0e-09, Sum P(2) = 1.0e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG K V
Sbjct: 332 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGV 379
Score = 63 (27.2 bits), Expect = 1.2e-35, Sum P(2) = 1.2e-35
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + E D +++ ++Q ++V + ELP + DL
Sbjct: 377 KGVAINFMTSE-DERMMADIQRFYNVVVEELPSNVADL 413
>ASPGD|ASPL0000014018 [details] [associations]
symbol:fal1 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 EMBL:BN001302 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195
EMBL:AACD01000139 KO:K13025 RefSeq:XP_681285.1
ProteinModelPortal:Q5AUL4 SMR:Q5AUL4 PRIDE:Q5AUL4
EnsemblFungi:CADANIAT00004036 GeneID:2869287 KEGG:ani:AN8016.2
OMA:EDWKFDT OrthoDB:EOG4HTD1W Uniprot:Q5AUL4
Length = 399
Score = 340 (124.7 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 85/263 (32%), Positives = 134/263 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D + QA+SG GKTA F ++ LQ ++T LV+ TRELA QI YM
Sbjct: 62 GRDTIAQAQSGTGKTATFSISALQVIDTVVRETQALVLSPTRELATQIQSVIMALGDYM- 120
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG I +D L + +V GTPGR+ ++R + L +K +LDE D++
Sbjct: 121 NVQCHACIGGTNIGEDIRKLD-YGQHVVSGTPGRVADMIRRRHLRTRHIKMLVLDEADEL 179
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + R + +++R P QV++ SATL ++ + KFM DP+ V V + +LTL G
Sbjct: 180 LNR-GFREQIYDVYRYLPPATQVVVVSATLPYDVLDMTTKFMTDPVRVLVKRD-ELTLEG 237
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q+++ D L Q VIF + + L+ + E NF S+H
Sbjct: 238 IKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNTRRKVDWLTDKMREANFTVSSMHGE 297
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER Q+F+ + + I+
Sbjct: 298 MPQKERDSIMQDFRQGNSRVLIS 320
Score = 150 (57.9 bits), Expect = 1.7e-09, Sum P(2) = 1.7e-09
Identities = 22/48 (45%), Positives = 40/48 (83%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 316 RVLISTDVWARGIDVQQVSLVINYDLPTNRENYIHRIGRSGRFGRKGV 363
Score = 58 (25.5 bits), Expect = 2.4e-35, Sum P(2) = 2.4e-35
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + + D +IL +++ + I E+P + DL
Sbjct: 361 KGVAINFVTSD-DVRILRDIELYYSTQIDEMPMNVADL 397
>ZFIN|ZDB-GENE-030131-6611 [details] [associations]
symbol:wu:fk48d07 "wu:fk48d07" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-030131-6611 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF EMBL:CR391937 IPI:IPI00901625
RefSeq:XP_001340860.1 UniGene:Dr.104819 UniGene:Dr.127773
Ensembl:ENSDART00000114495 GeneID:100007313 KEGG:dre:100007313
NextBio:20787456 Uniprot:E7F1G8
Length = 483
Score = 312 (114.9 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 73/257 (28%), Positives = 132/257 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++++ + +V+ TRELA Q+S+ SK
Sbjct: 122 ALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDYIQAIVLVPTRELALQVSQISINMSK 181
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ IKV GG ++ D L +++ TPGRIL L++ + ++ ++DE
Sbjct: 182 HLGGIKVMATTGGTNLRDDIMRLD-EIVHVIIATPGRILDLIKKGVAKVDKVQMAVMDEA 240
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + +++I P +Q++++SAT ++ K + P E+ + DE LT
Sbjct: 241 DKLLSQ-DFVVLIEDIISFLPKKRQILLYSATFPISVQKFMTKHLQKPYEINLMDE--LT 297
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +++ + IH
Sbjct: 298 LKGITQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSTQRVELLAKKITQLGYSCFYIH 357
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 358 AKMMQEYRNRVFHDFRN 374
Score = 149 (57.5 bits), Expect = 8.5e-10, Sum P(3) = 8.5e-10
Identities = 25/44 (56%), Positives = 37/44 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P++++TYLHR+ R+GR+G
Sbjct: 378 RNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRYG 421
Score = 65 (27.9 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 15/42 (35%), Positives = 21/42 (50%)
Query: 404 HKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
H GLAI + E D L ++D+ I +P ID S Y+
Sbjct: 422 HLGLAINLITSE-DRFNLKGIEDQLMTDIKPIPSSIDKSLYV 462
Score = 37 (18.1 bits), Expect = 3.3e-35, Sum P(3) = 3.3e-35
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 82 FRDFLLKPEILRAIVDC-W 99
F D+ LK E+L I + W
Sbjct: 90 FEDYCLKRELLMGIFEMGW 108
>UNIPROTKB|I3LLD5 [details] [associations]
symbol:I3LLD5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 Ensembl:ENSSSCT00000032168 OMA:SKRERIM
Uniprot:I3LLD5
Length = 401
Score = 339 (124.4 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 83/265 (31%), Positives = 134/265 (50%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRIX------LTL 238
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 239 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 298
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 299 GDMDQKERDVIMREFRSGSSRVLIT 323
Score = 150 (57.9 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 319 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 366
Score = 57 (25.1 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELP 436
KG+AI ++E D + L +++ ++ SI E+P
Sbjct: 364 KGVAINMVTEE-DKRTLRDIETFYNTSIEEMP 394
>POMBASE|SPAC1F5.10 [details] [associations]
symbol:SPAC1F5.10 "ATP-dependent RNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=IC]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC1F5.10 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 OMA:EDWKFDT
OrthoDB:EOG4HTD1W PIR:T38085 RefSeq:NP_592863.1
ProteinModelPortal:Q10055 SMR:Q10055 PRIDE:Q10055
EnsemblFungi:SPAC1F5.10.1 GeneID:2541602 KEGG:spo:SPAC1F5.10
NextBio:20802696 Uniprot:Q10055
Length = 394
Score = 332 (121.9 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 81/254 (31%), Positives = 131/254 (51%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F + LQ ++ + + L++ TRELA QI +M
Sbjct: 58 GRDVIAQAQSGTGKTATFSIGILQSIDLSVRDTQALILSPTRELAVQIQNVVLALGDHM- 116
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + D + L + +V GTPGR+ ++R + L +K ILDE D++
Sbjct: 117 NVQCHACIGGTSVGNDIKKLD-YGQHVVSGTPGRVTDMIRRRNLRTRNVKMLILDEADEL 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L Q + + +I+R P QV++ SATL +++ + KF +P+ + V + +LTL G
Sbjct: 176 LNQ-GFKEQIYDIYRYLPPGTQVVVVSATLPQDVLEMTNKFTTNPVRILVKRD-ELTLEG 233
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
L+Q+++ D L Q VIF S + L+ + E NF S+H
Sbjct: 234 LKQYFIAVEKEEWKFDTLCDLYDTLTITQAVIFCNSRRKVDWLTEKMREANFTVTSMHGE 293
Query: 388 MTQEERLKKYQEFK 401
M Q+ER Q+F+
Sbjct: 294 MPQKERDAIMQDFR 307
Score = 150 (57.9 bits), Expect = 3.9e-10, Sum P(2) = 3.9e-10
Identities = 22/48 (45%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+++ RG+D+++V++V NYD+P + + Y+HR+ R+GRFG K V
Sbjct: 312 RVLICTDIWARGIDVQQVSLVINYDLPANRENYIHRIGRSGRFGRKGV 359
Score = 64 (27.6 bits), Expect = 3.9e-35, Sum P(2) = 3.9e-35
Identities = 13/35 (37%), Positives = 22/35 (62%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++E D +IL +++ + I E+P I
Sbjct: 357 KGVAINFVTNE-DVRILRDIEQYYSTVIDEMPMNI 390
>TAIR|locus:2020078 [details] [associations]
symbol:EIF4A-2 "eif4a-2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0046686 "response to cadmium ion" evidence=IEP;RCA] [GO:0005774
"vacuolar membrane" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0005794 "Golgi apparatus"
evidence=RCA] [GO:0006094 "gluconeogenesis" evidence=RCA]
[GO:0006096 "glycolysis" evidence=RCA] [GO:0009651 "response to
salt stress" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0005886 GO:GO:0009506
GO:GO:0005524 GO:GO:0005774 GO:GO:0046686 EMBL:AC005287
GO:GO:0003743 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 EMBL:X65053
EMBL:AF386923 EMBL:AF428462 EMBL:BT008504 EMBL:AK226344
EMBL:AY087965 IPI:IPI00522023 PIR:JC1453 RefSeq:NP_175829.1
UniGene:At.195 ProteinModelPortal:P41377 SMR:P41377 STRING:P41377
PaxDb:P41377 PRIDE:P41377 ProMEX:P41377 EnsemblPlants:AT1G54270.1
GeneID:841868 KEGG:ath:AT1G54270 GeneFarm:936 TAIR:At1g54270
InParanoid:P41377 OMA:QVVWEEN PhylomeDB:P41377
ProtClustDB:CLSN2679594 Genevestigator:P41377 GermOnline:AT1G54270
Uniprot:P41377
Length = 412
Score = 329 (120.9 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 86/263 (32%), Positives = 132/263 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA+SG GKTA F LQQL+ LV+ TRELA QI K Y
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDYALLQCQALVLAPTRELAQQIEKVMRALGDYQG 135
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV GG +++D+ L+ +VVGTPGR+ ++R + L +K F+LDE D+M
Sbjct: 136 -VKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLRRQSLRPDCIKMFVLDEADEM 193
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +IF+ P QV +FSAT+ E + +KFM P+ + V + +LTL G
Sbjct: 194 LSR-GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEG 251
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV + L Q VIFV + + L+ + ++ + H
Sbjct: 252 IKQFYVNVEKEDWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 311
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q R +EF+ + IT
Sbjct: 312 MDQNTRDIIMREFRSGSSRVLIT 334
Score = 148 (57.2 bits), Expect = 2.6e-09, Sum P(2) = 2.6e-09
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG K V
Sbjct: 330 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGV 377
Score = 59 (25.8 bits), Expect = 2.7e-34, Sum P(2) = 2.7e-34
Identities = 14/38 (36%), Positives = 25/38 (65%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F + + D ++L ++Q ++V + ELP + DL
Sbjct: 375 KGVAINFVTLD-DQRMLFDIQKFYNVVVEELPSNVADL 411
>DICTYBASE|DDB_G0269146 [details] [associations]
symbol:ifdA "eukaryotic translation initiation factor
4A" species:44689 "Dictyostelium discoideum" [GO:0045335
"phagocytic vesicle" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0269146
GO:GO:0005524 EMBL:AAFI02000005 GenomeReviews:CM000150_GR
GO:GO:0045335 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:P10081 KO:K03257 OMA:AVINYHI EMBL:U78759
RefSeq:XP_645917.1 ProteinModelPortal:P90529 STRING:P90529
PRIDE:P90529 EnsemblProtists:DDB0191262 GeneID:8616858
KEGG:ddi:DDB_G0269146 InParanoid:P90529 Uniprot:P90529
Length = 395
Score = 330 (121.2 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 93/296 (31%), Positives = 149/296 (50%)
Query: 122 NYDMPED--SDTYLHRVARAGRFGTKAVL----GMDILCQAKSGMGKTAVFVLATLQQLE 175
N ++P+D Y + + +A++ G DI+ QA+SG GKTA F + L +++
Sbjct: 28 NMELPKDLLRGIYSYGFEKPSAIQQRAIIPLSKGFDIIAQAQSGTGKTATFTVGILSRID 87
Query: 176 TTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQI 235
+ L++ TRELA QI K +Y+ +IK GG I D + L++ +
Sbjct: 88 ISVLKCQALIIAPTRELAQQIQKVVLALGEYL-HIKSYACIGGTKITDDIQALQS-GVHV 145
Query: 236 VVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFS 295
VVGTPGR+ ++ +N ++ F LDE D+ML + + + EIFR P T QV +FS
Sbjct: 146 VVGTPGRVFEMLSRGIINRDTIRIFCLDEADEMLSR-GFKDQIYEIFRFLPKTIQVGLFS 204
Query: 296 ATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXX-DVLEF 354
AT++ E + KFM +P+ + V + +LTL G++Q YV + L
Sbjct: 205 ATMTDETLGITSKFMQNPVSILVKKD-ELTLEGIRQFYVNVGVEQGKFEVLTDLYETLSI 263
Query: 355 NQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
Q VIF + + L++ ++EQ F S H G Q++R Q F+ + IT
Sbjct: 264 TQSVIFCNTRRKVDWLTSKMTEQKFTVSSTH-G-DQKDRDGILQAFRSGATRVLIT 317
Score = 150 (57.9 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 24/60 (40%), Positives = 44/60 (73%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
R+L+ T+L RG+D+++V++V N+D+P + + Y+HR+ R+GRFG K V ++ + A+ G
Sbjct: 313 RVLITTDLLARGIDVQQVSLVINFDLPTNIENYIHRIGRSGRFGRKGV-AINFITDAERG 371
Score = 52 (23.4 bits), Expect = 1.1e-33, Sum P(2) = 1.1e-33
Identities = 11/35 (31%), Positives = 21/35 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F +D +I + + ++ I+E+P +I
Sbjct: 358 KGVAINFITDAERGQI-DELSRHYNTYIAEMPQDI 391
>GENEDB_PFALCIPARUM|PFD1070w [details] [associations]
symbol:PFD1070w "eukaryotic initiation factor,
putative" species:5833 "Plasmodium falciparum" [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
[GO:0003743 "translation initiation factor activity" evidence=ISS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 317 (116.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 80/265 (30%), Positives = 139/265 (52%)
Query: 143 GTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G K +L G D++ Q++SG GKT VF + L + + V+++ TRELA Q K
Sbjct: 47 GIKPILNGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCL 106
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
+ Y+ ++ + GG + D + L + ++ GTPGRI ++ + L +K +
Sbjct: 107 ALADYI-HVTIYCCIGGKKMSDDIKALN-NGVHVISGTPGRIYHMLNLRHLKCKYIKQLV 164
Query: 262 LDECDKMLEQLEMRRDVQEIFRS-SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+DE D+ML + + V +I+R SP+T Q+++ SATL +E+ + KFMH P+++ V
Sbjct: 165 IDEADEMLNK-GFKEQVYDIYRFLSPNT-QIILSSATLPQEVLEITNKFMHKPVKILVKR 222
Query: 321 EAKLTLHGLQQHYVXXXXXX-XXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+ +LTL G++Q +V + L Q V+F + + L+ + E NF
Sbjct: 223 D-ELTLEGIKQFFVSIEKEQWKYETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNF 281
Query: 380 PAVSIHRGMTQEER---LKKYQEFK 401
+H GM+Q ER + K+++ K
Sbjct: 282 TVCKMHAGMSQSERDDIMLKFRQCK 306
Score = 161 (61.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 25/61 (40%), Positives = 46/61 (75%)
Query: 88 KPEILRAIVDC-WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+ +I+ C +R+L++T+++GRG+D++ V++V NYD+P ++Y+HR+ R+GRFG K
Sbjct: 295 RDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKG 354
Query: 147 V 147
V
Sbjct: 355 V 355
Score = 64 (27.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++ D KIL +++ + I E+P I
Sbjct: 353 KGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNI 386
>UNIPROTKB|Q8IFN9 [details] [associations]
symbol:PFD1070w "Eukaryotic initiation factor, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0006446
"regulation of translational initiation" evidence=ISS] [GO:0016281
"eukaryotic translation initiation factor 4F complex" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006446 GO:GO:0016281
GO:GO:0003743 EMBL:AL844503 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025
OMA:EDWKFDT RefSeq:XP_001351530.1 ProteinModelPortal:Q8IFN9
SMR:Q8IFN9 EnsemblProtists:PFD1070w:mRNA GeneID:812458
KEGG:pfa:PFD1070w EuPathDB:PlasmoDB:PF3D7_0422700
ProtClustDB:CLSZ2436055 Uniprot:Q8IFN9
Length = 390
Score = 317 (116.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 80/265 (30%), Positives = 139/265 (52%)
Query: 143 GTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G K +L G D++ Q++SG GKT VF + L + + V+++ TRELA Q K
Sbjct: 47 GIKPILNGRDVILQSQSGTGKTCVFAVGALNCVNRNLNETQVIILSPTRELAEQTQKVCL 106
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
+ Y+ ++ + GG + D + L + ++ GTPGRI ++ + L +K +
Sbjct: 107 ALADYI-HVTIYCCIGGKKMSDDIKALN-NGVHVISGTPGRIYHMLNLRHLKCKYIKQLV 164
Query: 262 LDECDKMLEQLEMRRDVQEIFRS-SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+DE D+ML + + V +I+R SP+T Q+++ SATL +E+ + KFMH P+++ V
Sbjct: 165 IDEADEMLNK-GFKEQVYDIYRFLSPNT-QIILSSATLPQEVLEITNKFMHKPVKILVKR 222
Query: 321 EAKLTLHGLQQHYVXXXXXX-XXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+ +LTL G++Q +V + L Q V+F + + L+ + E NF
Sbjct: 223 D-ELTLEGIKQFFVSIEKEQWKYETLADLYESLTITQAVVFCNTQMKVDWLTKKMLESNF 281
Query: 380 PAVSIHRGMTQEER---LKKYQEFK 401
+H GM+Q ER + K+++ K
Sbjct: 282 TVCKMHAGMSQSERDDIMLKFRQCK 306
Score = 161 (61.7 bits), Expect = 2.0e-11, Sum P(2) = 2.0e-11
Identities = 25/61 (40%), Positives = 46/61 (75%)
Query: 88 KPEILRAIVDC-WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKA 146
+ +I+ C +R+L++T+++GRG+D++ V++V NYD+P ++Y+HR+ R+GRFG K
Sbjct: 295 RDDIMLKFRQCKFRVLISTDIWGRGLDVQEVSLVVNYDLPNSRESYIHRIGRSGRFGRKG 354
Query: 147 V 147
V
Sbjct: 355 V 355
Score = 64 (27.6 bits), Expect = 1.5e-33, Sum P(2) = 1.5e-33
Identities = 13/35 (37%), Positives = 21/35 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++ D KIL +++ + I E+P I
Sbjct: 353 KGVAINFVKND-DIKILRDIEQYYSTQIDEMPMNI 386
>TAIR|locus:2098886 [details] [associations]
symbol:AT3G61240 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=RCA] [GO:0009165 "nucleotide biosynthetic
process" evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006417 GO:GO:0006397 GO:GO:0003723
EMBL:AL137898 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AJ010464 EMBL:AY120712 EMBL:BT000038 IPI:IPI00548726
PIR:T47916 PIR:T51743 RefSeq:NP_191683.1 RefSeq:NP_974472.1
UniGene:At.20236 ProteinModelPortal:Q9M2E0 SMR:Q9M2E0 STRING:Q9M2E0
PaxDb:Q9M2E0 PRIDE:Q9M2E0 EnsemblPlants:AT3G61240.1
EnsemblPlants:AT3G61240.2 GeneID:825296 KEGG:ath:AT3G61240
GeneFarm:928 TAIR:At3g61240 InParanoid:Q9M2E0 OMA:PLAMDQR
PhylomeDB:Q9M2E0 ProtClustDB:CLSN2683443 Genevestigator:Q9M2E0
GermOnline:AT3G61240 Uniprot:Q9M2E0
Length = 498
Score = 343 (125.8 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 81/258 (31%), Positives = 136/258 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKT F + L++++ ++ + +++ TRELA Q S+ + SK
Sbjct: 158 ALTGSDILARAKNGTGKTGAFCIPVLEKIDPNNNVIQAMILVPTRELALQTSQVCKELSK 217
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
Y+ NI+V V GG ++ D ++ H P ++VGTPGRIL L + L ++DE
Sbjct: 218 YL-NIQVMVTTGGTSLRDD--IMRLHQPVHLLVGTPGRILDLTKKGVCVLKDCAMLVMDE 274
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L E + ++E+ + P +Q +MFSAT ++ + + P + + D+ L
Sbjct: 275 ADKLLSA-EFQPSLEELIQFLPQNRQFLMFSATFPVTVKAFKDRHLRKPYVINLMDQ--L 331
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF SV R L+ ++E + I
Sbjct: 332 TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 391
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q+ R + + EF++
Sbjct: 392 HAKMVQDHRNRVFHEFRN 409
Score = 149 (57.5 bits), Expect = 7.2e-07, Sum P(2) = 7.2e-07
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P S++YLHRV R+GRFG
Sbjct: 413 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 456
Score = 37 (18.1 bits), Expect = 1.9e-33, Sum P(2) = 1.9e-33
Identities = 6/16 (37%), Positives = 11/16 (68%)
Query: 82 FRDFLLKPEILRAIVD 97
F D+ LK ++L+ I +
Sbjct: 126 FEDYFLKRDLLKGIYE 141
>UNIPROTKB|Q73EU1 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:222523 "Bacillus cereus ATCC 10987" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017194
RefSeq:NP_976595.1 ProteinModelPortal:Q73EU1 STRING:Q73EU1
DNASU:2752637 EnsemblBacteria:EBBACT00000029857 GeneID:2752637
GenomeReviews:AE017194_GR KEGG:bca:BCE_0267 PATRIC:18849372
Uniprot:Q73EU1
Length = 525
Score = 362 (132.5 bits), Expect = 3.3e-33, P = 3.3e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|A0R8U6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:412694 "Bacillus thuringiensis str. Al Hakam" [GO:0003723
"RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 EMBL:CP000485 RefSeq:YP_893146.1
ProteinModelPortal:A0R8U6 STRING:A0R8U6
EnsemblBacteria:EBBACT00000069056 GeneID:4546566
GenomeReviews:CP000485_GR KEGG:btl:BALH_0232 PATRIC:18992499
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
BioCyc:BTHU412694:GH1W-393-MONOMER Uniprot:A0R8U6
Length = 528
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|Q63GX5 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:288681 "Bacillus cereus E33L" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0043590
"bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:CP000001 RefSeq:YP_081836.1
ProteinModelPortal:Q63GX5 STRING:Q63GX5
EnsemblBacteria:EBBACT00000041470 GeneID:3022962
GenomeReviews:CP000001_GR KEGG:bcz:BCZK0221 PATRIC:18883656
BioCyc:BCER288681:GHG7-745-MONOMER Uniprot:Q63GX5
Length = 528
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|Q6HPE6 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:281309 "Bacillus thuringiensis serovar konkukian str.
97-27" [GO:0003723 "RNA binding" evidence=ISS] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005524
"ATP binding" evidence=ISS] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE017355 RefSeq:YP_034574.1
ProteinModelPortal:Q6HPE6 EnsemblBacteria:EBBACT00000074889
GeneID:2854643 GenomeReviews:AE017355_GR KEGG:btk:BT9727_0219
PATRIC:18980863 BioCyc:BTHU281309:GJID-254-MONOMER Uniprot:Q6HPE6
Length = 528
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|Q81VG0 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:1392 "Bacillus anthracis" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0043590 "bacterial nucleoid"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>TIGR_CMR|BA_0247 [details] [associations]
symbol:BA_0247 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 KO:K05592 OMA:IIDHINR ProtClustDB:CLSK915749
RefSeq:NP_842800.1 RefSeq:YP_016853.1 RefSeq:YP_026518.1
HSSP:Q58083 ProteinModelPortal:Q81VG0 DNASU:1087008
EnsemblBacteria:EBBACT00000010496 EnsemblBacteria:EBBACT00000018111
EnsemblBacteria:EBBACT00000022275 GeneID:1087008 GeneID:2818435
GeneID:2849489 KEGG:ban:BA_0247 KEGG:bar:GBAA_0247 KEGG:bat:BAS0233
BioCyc:BANT260799:GJAJ-255-MONOMER
BioCyc:BANT261594:GJ7F-263-MONOMER Uniprot:Q81VG0
Length = 528
Score = 362 (132.5 bits), Expect = 3.6e-33, P = 3.6e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|Q81IT9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:226900 "Bacillus cereus ATCC 14579" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 KO:K05592 OMA:IIDHINR
ProtClustDB:CLSK915749 HSSP:Q58083 EMBL:AE016877 RefSeq:NP_830127.1
STRING:Q81IT9 DNASU:1202612 EnsemblBacteria:EBBACT00000032730
GeneID:1202612 GenomeReviews:AE016877_GR KEGG:bce:BC0259
PATRIC:32596146 BioCyc:BCER226900:GJEU-261-MONOMER Uniprot:Q81IT9
Length = 533
Score = 362 (132.5 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 83/257 (32%), Positives = 139/257 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ QA++G GKTA F L L +++T +V +V+ TRELA Q+ +E + K
Sbjct: 36 ALQGKDIIGQAQTGTGKTAAFGLPLLDKVDTHKESVQGIVIAPTRELAIQVGEELYKIGK 95
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ +++ +GG I + LK H P I+VGTPGRIL + K L L ++ +LDE
Sbjct: 96 H-KRVRILPIYGGQDINRQIRALKKH-PHIIVGTPGRILDHINRKTLRLQNVETVVLDEA 153
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D+ML + D++ I P T Q ++FSAT+ IR + ++FM +P + V + ++T
Sbjct: 154 DEMLN-MGFIEDIEAILTDVPETHQTLLFSATMPDPIRRIAERFMTEPQHIKVKAK-EVT 211
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
+ +QQ Y+ D+ ++F ++ R LS L+ + + A IH
Sbjct: 212 MPNIQQFYLEVQEKKKFDVLTRLLDIQSPELAIVFGRTKRRVDELSEALNLRGYAAEGIH 271
Query: 386 RGMTQEERLKKYQEFKD 402
+TQ +R+ ++FK+
Sbjct: 272 GDLTQAKRMSVLRKFKE 288
Score = 136 (52.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 35/103 (33%), Positives = 57/103 (55%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D L++ ++G A IH G + +LR + +LVAT++ RG+DI V
Sbjct: 254 DELSEALNLRGYAAEGIH--GDLTQAKRMSVLRKFKEGSIEVLVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGK 162
V+N+D+P+D ++Y+HR+ R GR G K + M + +SG K
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKKGI-AMLFVTPRESGQLK 353
>UNIPROTKB|E7EQG2 [details] [associations]
symbol:EIF4A2 "Eukaryotic initiation factor 4A-II"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:AC112907 HGNC:HGNC:3284 ChiTaRS:EIF4A2
IPI:IPI00924536 ProteinModelPortal:E7EQG2 SMR:E7EQG2 PRIDE:E7EQG2
Ensembl:ENST00000425053 ArrayExpress:E7EQG2 Bgee:E7EQG2
Uniprot:E7EQG2
Length = 362
Score = 361 (132.1 bits), Expect = 4.1e-33, P = 4.1e-33
Identities = 88/265 (33%), Positives = 138/265 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQLE LV+ TRELA QI K Y
Sbjct: 68 IKGYDVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P IVVGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 128 MG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNRRYLSPKWIKMFVLDEAD 186
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + EIF+ + QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 187 EMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEVTKKFMRDPIRILVKKE-ELTL 244
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 245 EGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTRRKVDWLTEKMHARDFTVSALH 304
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 305 GDMDQKERDVIMREFRSGSSRVLIT 329
>TAIR|locus:2050715 [details] [associations]
symbol:AT2G45810 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0005829
"cytosol" evidence=IDA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006417 GO:GO:0006397
GO:GO:0003723 GO:GO:0000932 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AC004665 GO:GO:0008026
eggNOG:COG0513 HOGENOM:HOG000268797 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 OMA:HIDPARF ProtClustDB:CLSN2683443 EMBL:AY039862
EMBL:BT002709 EMBL:AJ010459 IPI:IPI00528597 PIR:T02466 PIR:T51740
RefSeq:NP_182105.1 UniGene:At.46 ProteinModelPortal:Q94BV4
SMR:Q94BV4 IntAct:Q94BV4 STRING:Q94BV4 PaxDb:Q94BV4 PRIDE:Q94BV4
EnsemblPlants:AT2G45810.1 GeneID:819189 KEGG:ath:AT2G45810
GeneFarm:917 TAIR:At2g45810 InParanoid:Q94BV4 PhylomeDB:Q94BV4
Genevestigator:Q94BV4 GermOnline:AT2G45810 Uniprot:Q94BV4
Length = 528
Score = 342 (125.4 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
Identities = 79/258 (30%), Positives = 140/258 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKT F + TL++++ ++ + +++ TRELA Q S+ + SK
Sbjct: 188 ALTGSDILARAKNGTGKTGAFCIPTLEKIDPENNVIQAVILVPTRELALQTSQVCKELSK 247
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
Y+ I+V V GG ++ D ++ + P ++VGTPGRIL L + L ++DE
Sbjct: 248 YLK-IEVMVTTGGTSLRDD--IMRLYQPVHLLVGTPGRILDLAKKGVCVLKDCAMLVMDE 304
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L +E + ++E+ + P ++Q++MFSAT ++ +++ P + + D+ L
Sbjct: 305 ADKLLS-VEFQPSIEELIQFLPESRQILMFSATFPVTVKSFKDRYLKKPYIINLMDQ--L 361
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF SV R L+ ++E + I
Sbjct: 362 TLMGVTQYYAFVEERQKVHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFYI 421
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q+ R + + +F++
Sbjct: 422 HAKMVQDHRNRVFHDFRN 439
Score = 149 (57.5 bits), Expect = 4.3e-07, Sum P(2) = 4.3e-07
Identities = 27/44 (61%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P S++YLHRV R+GRFG
Sbjct: 443 RNLVCTDLFTRGIDIQAVNVVINFDFPRTSESYLHRVGRSGRFG 486
Score = 40 (19.1 bits), Expect = 4.2e-33, Sum P(2) = 4.2e-33
Identities = 7/16 (43%), Positives = 11/16 (68%)
Query: 82 FRDFLLKPEILRAIVD 97
F D+ LK ++LR I +
Sbjct: 156 FEDYFLKRDLLRGIYE 171
>GENEDB_PFALCIPARUM|PF14_0655 [details] [associations]
symbol:PF14_0655 "RNA helicase-1, putative"
species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA binding"
evidence=ISS] [GO:0003743 "translation initiation factor activity"
evidence=ISS] [GO:0000339 "RNA cap binding" evidence=ISS]
[GO:0006446 "regulation of translational initiation" evidence=ISS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 320 (117.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 85/270 (31%), Positives = 137/270 (50%)
Query: 143 GTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G K +L G D + QA+SG GKTA FV+++LQ + L++ TRELA QI K
Sbjct: 53 GIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPTRELAQQIQKVVL 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ +K GG +++D + LK +VVGTPGR+ ++ + L + LK FI
Sbjct: 113 ALGDYLK-VKCHACVGGTVVREDIDKLK-QGVHMVVGTPGRVYDMIDKRHLGVDRLKLFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + + E+F+ QV +FSAT+ +EI + +FM DP + V +
Sbjct: 171 LDEADEMLSR-GFKAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKD 229
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q YV + L Q +I+ + + L+ + + F
Sbjct: 230 -ELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+H M Q++R +EF+ + +T
Sbjct: 289 VSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318
Score = 160 (61.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 26/48 (54%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+LV T+L RG+D+++V++V NYD+P DTY+HR+ R+GRFG K V
Sbjct: 314 RVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGV 361
Score = 55 (24.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 405 KGLAITFAS-DENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + D+ + L ++ + I E+P E+
Sbjct: 359 KGVAINFVTNDDKEKDKLKKIESYYSTQIEEMPLEV 394
>UNIPROTKB|Q8IKF0 [details] [associations]
symbol:H45 "Helicase 45" species:36329 "Plasmodium
falciparum 3D7" [GO:0006446 "regulation of translational
initiation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006446
GO:GO:0003676 EMBL:AE014187 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GenomeReviews:AE014187_GR KO:K03257 OMA:TENDARQ
RefSeq:XP_001348829.1 ProteinModelPortal:Q8IKF0 SMR:Q8IKF0
IntAct:Q8IKF0 MINT:MINT-1575859 EnsemblProtists:PF14_0655:mRNA
GeneID:812237 KEGG:pfa:PF14_0655 EuPathDB:PlasmoDB:PF3D7_1468700
ProtClustDB:PTZ00424 Uniprot:Q8IKF0
Length = 398
Score = 320 (117.7 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 85/270 (31%), Positives = 137/270 (50%)
Query: 143 GTKAVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYE 201
G K +L G D + QA+SG GKTA FV+++LQ + L++ TRELA QI K
Sbjct: 53 GIKPILNGYDTIGQAQSGTGKTATFVISSLQLINYDYVACQALILAPTRELAQQIQKVVL 112
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFI 261
Y+ +K GG +++D + LK +VVGTPGR+ ++ + L + LK FI
Sbjct: 113 ALGDYLK-VKCHACVGGTVVREDIDKLK-QGVHMVVGTPGRVYDMIDKRHLGVDRLKLFI 170
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+ML + + + E+F+ QV +FSAT+ +EI + +FM DP + V +
Sbjct: 171 LDEADEMLSR-GFKAQIYEVFKKLVPDIQVALFSATMPQEILELTTRFMRDPKTILVKKD 229
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
+LTL G++Q YV + L Q +I+ + + L+ + + F
Sbjct: 230 -ELTLEGIRQFYVAVEKEEWKLDTLCDLYETLTITQSIIYCNTRKKVDILTQEMHNRLFT 288
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+H M Q++R +EF+ + +T
Sbjct: 289 VSCMHGDMDQKDRDLIMREFRSGSTRVLVT 318
Score = 160 (61.4 bits), Expect = 2.5e-10, Sum P(2) = 2.5e-10
Identities = 26/48 (54%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+LV T+L RG+D+++V++V NYD+P DTY+HR+ R+GRFG K V
Sbjct: 314 RVLVTTDLLARGIDVQQVSLVINYDLPASPDTYIHRIGRSGRFGRKGV 361
Score = 55 (24.4 bits), Expect = 6.2e-33, Sum P(2) = 6.2e-33
Identities = 11/36 (30%), Positives = 20/36 (55%)
Query: 405 KGLAITFAS-DENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F + D+ + L ++ + I E+P E+
Sbjct: 359 KGVAINFVTNDDKEKDKLKKIESYYSTQIEEMPLEV 394
>UNIPROTKB|J3KT12 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1
ProteinModelPortal:J3KT12 Ensembl:ENST00000582746 Uniprot:J3KT12
Length = 341
Score = 357 (130.7 bits), Expect = 1.1e-32, P = 1.1e-32
Identities = 85/265 (32%), Positives = 137/265 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 126
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 127 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 186 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q Y+ + L Q VIF+ + + L+ + ++F ++H
Sbjct: 244 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDFTVSAMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAIT 410
M Q+ER +EF+ + IT
Sbjct: 304 GDMDQKERDVIMREFRSGSSRVLIT 328
>UNIPROTKB|Q5ZM36 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA
catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016607
"nuclear speck" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0006417 GO:GO:0000184 GO:GO:0008380 GO:GO:0016607
GO:GO:0006397 GO:GO:0003723 GO:GO:0051028 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:AJ719548 IPI:IPI00588271
RefSeq:NP_001025820.1 UniGene:Gga.7844 ProteinModelPortal:Q5ZM36
SMR:Q5ZM36 PRIDE:Q5ZM36 GeneID:416704 KEGG:gga:416704
InParanoid:Q5ZM36 NextBio:20820126 Uniprot:Q5ZM36
Length = 412
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 74 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 133
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 134 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 191
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 192 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 249
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 250 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 309
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 310 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 365
Query: 446 EGR 448
GR
Sbjct: 366 IGR 368
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 330 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 377
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 375 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 411
>UNIPROTKB|Q2NL22 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9913 "Bos taurus" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0000184
GO:GO:0008380 GO:GO:0017148 GO:GO:0016607 GO:GO:0006397
GO:GO:0045727 GO:GO:0051028 GO:GO:0071013 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0004004
GO:GO:0035145 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989
GeneTree:ENSGT00530000062880 KO:K13025 EMBL:BC111184
IPI:IPI00708766 RefSeq:NP_001039653.1 UniGene:Bt.3377
ProteinModelPortal:Q2NL22 SMR:Q2NL22 PRIDE:Q2NL22
Ensembl:ENSBTAT00000021327 GeneID:515145 KEGG:bta:515145 CTD:9775
InParanoid:Q2NL22 OMA:LALGDFM OrthoDB:EOG4229JV NextBio:20871682
Uniprot:Q2NL22
Length = 411
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 133 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 191 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 249 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 309 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 364
Query: 446 EGR 448
GR
Sbjct: 365 IGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>UNIPROTKB|E2RDZ4 [details] [associations]
symbol:EIF4A3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0045727 "positive regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0017148
"negative regulation of translation" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT CTD:9775
EMBL:AAEX03006203 RefSeq:XP_533130.2 Ensembl:ENSCAFT00000009055
GeneID:475922 KEGG:cfa:475922 NextBio:20851666 Uniprot:E2RDZ4
Length = 411
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 133 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 191 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 249 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 309 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 364
Query: 446 EGR 448
GR
Sbjct: 365 IGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>UNIPROTKB|P38919 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9606 "Homo sapiens" [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0048026 "positive
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0016607 "nuclear speck" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0045727 "positive regulation
of translation" evidence=IMP] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0035145 "exon-exon junction complex"
evidence=IDA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IMP;TAS] [GO:0005515
"protein binding" evidence=IPI] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0017148 "negative
regulation of translation" evidence=IDA] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene expression"
evidence=TAS] [GO:0016070 "RNA metabolic process" evidence=TAS]
[GO:0016071 "mRNA metabolic process" evidence=TAS] [GO:0019221
"cytokine-mediated signaling pathway" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005829
GO:GO:0005524 Reactome:REACT_6900 GO:GO:0000184 GO:GO:0017148
GO:GO:0016607 GO:GO:0019221 TCDB:3.A.18.1.1 EMBL:CH471099
GO:GO:0045727 GO:GO:0051028 GO:GO:0000398 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 GO:GO:0000289 EMBL:AC087741 GO:GO:0035145 PDB:2HYI
PDB:2J0Q PDB:2J0S PDB:2J0U PDB:2XB2 PDB:3EX7 PDBsum:2HYI
PDBsum:2J0Q PDBsum:2J0S PDBsum:2J0U PDBsum:2XB2 PDBsum:3EX7
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0008143 HOVERGEN:HBG107989 KO:K13025
OMA:EDWKFDT CTD:9775 OrthoDB:EOG4229JV EMBL:X79538 EMBL:D21853
EMBL:AK290608 EMBL:CR456750 EMBL:BC003662 EMBL:BC004386
EMBL:BC011151 IPI:IPI00009328 PIR:S45142 RefSeq:NP_055555.1
UniGene:Hs.389649 PDB:2HXY PDBsum:2HXY ProteinModelPortal:P38919
SMR:P38919 DIP:DIP-33218N IntAct:P38919 MINT:MINT-1460615
STRING:P38919 PhosphoSite:P38919 DMDM:20532400
REPRODUCTION-2DPAGE:IPI00009328 PaxDb:P38919 PeptideAtlas:P38919
PRIDE:P38919 DNASU:9775 Ensembl:ENST00000269349 GeneID:9775
KEGG:hsa:9775 UCSC:uc002jxs.3 GeneCards:GC17M078109 HGNC:HGNC:18683
HPA:HPA021878 MIM:608546 neXtProt:NX_P38919 PharmGKB:PA162384945
InParanoid:P38919 PhylomeDB:P38919 ChiTaRS:EIF4A3
EvolutionaryTrace:P38919 GenomeRNAi:9775 NextBio:36802 Bgee:P38919
CleanEx:HS_EIF4A3 Genevestigator:P38919 GermOnline:ENSG00000141543
Uniprot:P38919
Length = 411
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 133 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 191 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 249 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 309 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 364
Query: 446 EGR 448
GR
Sbjct: 365 IGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>UNIPROTKB|A6M931 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:DQ351286 RefSeq:NP_001093663.1
UniGene:Ssc.869 ProteinModelPortal:A6M931 SMR:A6M931 PRIDE:A6M931
GeneID:100101926 KEGG:ssc:100101926 Uniprot:A6M931
Length = 411
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 133 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 191 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 249 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 309 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 364
Query: 446 EGR 448
GR
Sbjct: 365 IGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>RGD|1591139 [details] [associations]
symbol:Eif4a3 "eukaryotic translation initiation factor 4A,
isoform 3" species:10116 "Rattus norvegicus" [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0016607 "nuclear speck" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0035145 "exon-exon junction complex" evidence=IEA] [GO:0045727
"positive regulation of translation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048026 "positive regulation of mRNA
splicing, via spliceosome" evidence=IEA] [GO:0051028 "mRNA
transport" evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:1591139 GO:GO:0005524
GO:GO:0005737 GO:GO:0006417 GO:GO:0000184 GO:GO:0008380
GO:GO:0016607 GO:GO:0006397 GO:GO:0005681 GO:GO:0003723
EMBL:CH473948 GO:GO:0051028 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:P60842 KO:K13025 CTD:9775 EMBL:BC105875
IPI:IPI00656385 RefSeq:NP_001093628.1 UniGene:Rn.202617
ProteinModelPortal:Q3B8Q2 SMR:Q3B8Q2 PRIDE:Q3B8Q2 GeneID:688288
KEGG:rno:688288 NextBio:736113 Genevestigator:Q3B8Q2 Uniprot:Q3B8Q2
Length = 411
Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
Identities = 94/303 (31%), Positives = 150/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 73 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDY 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 133 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 190
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +LTL
Sbjct: 191 EMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 248
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 249 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 308
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 309 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHR 364
Query: 446 EGR 448
GR
Sbjct: 365 IGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>UNIPROTKB|K7GT57 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9823 "Sus scrofa" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00660000095549 EMBL:CU467793
Ensembl:ENSSSCT00000032673 Uniprot:K7GT57
Length = 130
Score = 220 (82.5 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 44/53 (83%), Positives = 47/53 (88%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQIS 197
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQIS
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQIS 130
Score = 160 (61.4 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>DICTYBASE|DDB_G0291804 [details] [associations]
symbol:ddx6 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0291804 GO:GO:0005524 GO:GO:0005737
GenomeReviews:CM000155_GR GO:GO:0006397 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
EMBL:AAFI02000185 RefSeq:XP_629938.1 HSSP:P39517
ProteinModelPortal:Q54E49 SMR:Q54E49 PRIDE:Q54E49
EnsemblProtists:DDB0234196 GeneID:8628344 KEGG:ddi:DDB_G0291804
OMA:QFMEKHL ProtClustDB:CLSZ2429504 Uniprot:Q54E49
Length = 423
Score = 354 (129.7 bits), Expect = 2.3e-32, P = 2.3e-32
Identities = 83/258 (32%), Positives = 138/258 (53%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ +AK+G GKTA F++ L++ + T + VL++ TRELA Q S+ + K
Sbjct: 83 ALAGRDIMARAKNGTGKTASFLIPALEKTDPTKDVIQVLILVPTRELALQTSQVCKELGK 142
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
YM N++V GG ++ D ++ +NP I+V TPGR+L L + NLS I+DE
Sbjct: 143 YM-NVQVMASTGGTSLKDD--IMRLYNPVHILVATPGRVLDLAQKNVANLSNCHTMIMDE 199
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L Q E + V+++ P +Q+++FSAT ++ + ++ E+ + +E L
Sbjct: 200 ADKLLSQ-EFQPLVEQLINFLPQQRQILLFSATFPVTVKSFKEHYLQQAFEINLMEE--L 256
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF SV R L+ ++E + I
Sbjct: 257 TLKGVTQYYAFVEERQKIHCLNTLFSKLQINQSIIFCNSVNRVELLAKKITELGYSCFFI 316
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q R + + +F++
Sbjct: 317 HAKMVQAHRNRVFHDFRN 334
Score = 149 (57.5 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 26/44 (59%), Positives = 37/44 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV+++LF RG+DI+ VN+V N+D P+ S+TYLHR+ R+GRFG
Sbjct: 338 RNLVSSDLFTRGIDIQDVNVVINFDFPKHSETYLHRIGRSGRFG 381
>WB|WBGene00018007 [details] [associations]
symbol:F33D11.10 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0009790 "embryo development"
evidence=IMP] [GO:0001703 "gastrulation with mouth forming first"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0051301
"cell division" evidence=IMP] [GO:0000910 "cytokinesis"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0018996 "molting
cycle, collagen and cuticulin-based cuticle" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0009792 GO:GO:0040007
GO:GO:0040010 GO:GO:0002119 GO:GO:0018996 GO:GO:0003676
GO:GO:0000910 GO:GO:0040035 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 GO:GO:0001703 KO:K13025 OMA:IFGKQPF
EMBL:FO080753 PIR:T32773 RefSeq:NP_491703.1
ProteinModelPortal:O44781 SMR:O44781 DIP:DIP-27243N IntAct:O44781
MINT:MINT-1047941 STRING:O44781 PaxDb:O44781
EnsemblMetazoa:F33D11.10.1 EnsemblMetazoa:F33D11.10.2 GeneID:172258
KEGG:cel:CELE_F33D11.10 UCSC:F33D11.10.1 CTD:172258
WormBase:F33D11.10 InParanoid:O44781 NextBio:874709 Uniprot:O44781
Length = 399
Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
Identities = 103/344 (29%), Positives = 166/344 (48%)
Query: 115 ERVNIVFNYD---MPED--SDTYLHRVARAGRFGTKAVLGM----DILCQAKSGMGKTAV 165
E VN++ +D + ED Y + + +AV + D++ QA+SG GKTA
Sbjct: 20 EEVNVIPTFDKMGLREDLLRGIYAYGFEKPSAIQQRAVPAILKARDVIAQAQSGTGKTAT 79
Query: 166 FVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDE 225
F ++ LQ L+T L++ TRELA QI K YM N++ GG + +D
Sbjct: 80 FSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALGDYM-NVQCHACIGGTNLGEDI 138
Query: 226 EYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSS 285
L + +V GTPGR+ ++R + L +K +LDE D+ML + + + +I+R
Sbjct: 139 RKLD-YGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDEADEMLNK-GFKEQLYDIYRYL 196
Query: 286 PHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXX-XXXX 344
P QV++ SATL EI + KFM DP+ + V + +LTL G++Q +V
Sbjct: 197 PPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRD-ELTLEGIKQFFVAVDREEWKFDT 255
Query: 345 XXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFH 404
D L Q V+F + + L+ + E NF S+H M Q++R + K+F
Sbjct: 256 LIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSSMHGDMEQKDR---DEVMKEFR 312
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
G S + A+ L+ Q ++ +LP+ +L + GR
Sbjct: 313 AGTTRVLISTDVWARGLDVPQVSLVINY-DLPNNRELYIHRIGR 355
Score = 153 (58.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 66 KQKEVKGAYVSIHSSGFRDFLLKPEILRAI-VDCWRILVATNLFGRGMDIERVNIVFNYD 124
K KE S+H G + + E+++ R+L++T+++ RG+D+ +V++V NYD
Sbjct: 284 KMKEANFTVSSMH--GDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYD 341
Query: 125 MPEDSDTYLHRVARAGRFGTKAV 147
+P + + Y+HR+ R+GRFG K V
Sbjct: 342 LPNNRELYIHRIGRSGRFGRKGV 364
Score = 62 (26.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++D +IL +++ + I E+P I
Sbjct: 362 KGVAINFVK-QDDVRILRDIEQYYSTQIDEMPMNI 395
>UNIPROTKB|F1PXG6 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000021679 Uniprot:F1PXG6
Length = 825
Score = 342 (125.4 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 96/294 (32%), Positives = 146/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 101 GLDLIVQAKSGTGKTCVFSTIALDSLVLENQSTQILILAPTREIAVQIHSVITAIGIKME 160
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 161 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 218
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + K+M DP V ++ +L G
Sbjct: 219 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIG 277
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 278 LKQYYKIVNSYPLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFP 337
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
A I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 338 AECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 390
Score = 152 (58.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 363 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 412
Score = 46 (21.3 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 409 GLTVTYCCRGEEENVMMKIAQKCNINLLPLPDPI 442
>UNIPROTKB|J9P828 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AAEX03011088 EMBL:AAEX03011089
Ensembl:ENSCAFT00000050085 Uniprot:J9P828
Length = 825
Score = 342 (125.4 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 96/294 (32%), Positives = 146/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 101 GLDLIVQAKSGTGKTCVFSTIALDSLVLENQSTQILILAPTREIAVQIHSVITAIGIKME 160
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 161 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 218
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + K+M DP V ++ +L G
Sbjct: 219 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIG 277
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 278 LKQYYKIVNSYPLAHKIFEEKAQHLQELFSRIPFNQALVFSNLHSRAQHLADILSAKGFP 337
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
A I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 338 AECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 390
Score = 152 (58.6 bits), Expect = 1.7e-07, Sum P(2) = 1.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 363 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 412
Score = 46 (21.3 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 409 GLTVTYCCRGEEENVMMKIAQKCNINLLPLPDPI 442
>UNIPROTKB|Q4K8U0 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A" species:220664
"Pseudomonas protegens Pf-5" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006950 "response to stress"
evidence=ISS] [GO:0008026 "ATP-dependent helicase activity"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006950
GO:GO:0006355 GO:GO:0003723 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
OMA:LPQGMPK RefSeq:YP_261343.1 ProteinModelPortal:Q4K8U0
GeneID:3477377 KEGG:pfl:PFL_4251 PATRIC:19877913
ProtClustDB:CLSK867560 BioCyc:PFLU220664:GIX8-4286-MONOMER
Uniprot:Q4K8U0
Length = 557
Score = 355 (130.0 bits), Expect = 4.0e-32, P = 4.0e-32
Identities = 77/266 (28%), Positives = 147/266 (55%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA++G GKTA F L L +++ + L++ TRELA Q++ +E ++K M
Sbjct: 43 GHDMIGQAQTGTGKTAAFALPILHRIDPSKREPQALILAPTRELALQVATAFETYAKQMP 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG P+ + ++ + QIVV TPGR+ +R + L+ + H +LDE D+M
Sbjct: 103 GVTVVAVYGGAPMGPQLKAIR-NGAQIVVATPGRLCDHLRRDEKVLATVNHLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ L D++ IF++ P T+Q ++FSATL + IR + ++ + DP V + + + T+
Sbjct: 162 LK-LGFMDDLEVIFKAMPETRQTVLFSATLPQSIRAIAERHLKDPKHVKIQSKTQ-TVTA 219
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q ++ +V +F+ +++FV++ + L++ L + + A +++ +
Sbjct: 220 IEQAHLLVHADQKTSAVLSLLEVEDFDALIMFVRTKQATLDLASALEAKGYKAAALNGDI 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q +R + KD L I A+D
Sbjct: 280 AQNQRERVIDSLKDGR--LDIVVATD 303
Score = 127 (49.8 bits), Expect = 6.8e-05, P = 6.8e-05
Identities = 22/43 (51%), Positives = 32/43 (74%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
I+VAT++ RG+D+ R+ VFN DMP D ++Y+HR+ R GR G
Sbjct: 298 IVVATDVAARGLDVPRITHVFNVDMPYDPESYVHRIGRTGRAG 340
>ZFIN|ZDB-GENE-040426-915 [details] [associations]
symbol:eif4a3 "eukaryotic translation initiation
factor 4A, isoform 3" species:7955 "Danio rerio" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006810 "transport" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0051028 "mRNA transport" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-040426-915
GO:GO:0005524 GO:GO:0005737 GO:GO:0006417 GO:GO:0000184
GO:GO:0008380 GO:GO:0016607 GO:GO:0006397 GO:GO:0003723
GO:GO:0051028 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 KO:K13025 CTD:9775
OrthoDB:EOG4229JV EMBL:BC045939 IPI:IPI00481285 RefSeq:NP_957372.1
UniGene:Dr.78203 ProteinModelPortal:Q7ZVA6 SMR:Q7ZVA6 STRING:Q7ZVA6
PRIDE:Q7ZVA6 GeneID:394053 KEGG:dre:394053 InParanoid:Q7ZVA6
NextBio:20815014 ArrayExpress:Q7ZVA6 Uniprot:Q7ZVA6
Length = 406
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 94/303 (31%), Positives = 149/303 (49%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K Y
Sbjct: 68 IKGRDVIAQSQSGTGKTATFCVSVLQCLDIQVRETQALILAPTRELAGQIQKVLLALGDY 127
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D
Sbjct: 128 M-NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEAD 185
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +++R P QV + SATL EI + KFM DP+ + V + +LTL
Sbjct: 186 EMLNK-GFKEQIYDVYRYLPPATQVCLISATLPHEILEMTNKFMTDPIRILVKRD-ELTL 243
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q +V D L Q VIF + + L+ + E NF S+H
Sbjct: 244 EGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMH 303
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L +
Sbjct: 304 GDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVSQVSLIINY-DLPNNRELYIHR 359
Query: 446 EGR 448
GR
Sbjct: 360 IGR 362
Score = 145 (56.1 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 324 RVLISTDVWARGLDVSQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 371
Score = 61 (26.5 bits), Expect = 3.4e-09, Sum P(2) = 3.4e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 369 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 405
>UNIPROTKB|K7EN69 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014001 PROSITE:PS51192 InterPro:IPR014014
PROSITE:PS51195 HGNC:HGNC:17821 EMBL:AC008569
Ensembl:ENST00000590239 Uniprot:K7EN69
Length = 130
Score = 225 (84.3 bits), Expect = 5.4e-32, Sum P(2) = 5.4e-32
Identities = 44/54 (81%), Positives = 49/54 (90%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISK 198
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELAFQISK
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELAFQISK 130
Score = 150 (57.9 bits), Expect = 5.4e-32, Sum P(2) = 5.4e-32
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>WB|WBGene00022029 [details] [associations]
symbol:Y65B4A.6 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0018991 "oviposition" evidence=IMP] [GO:0040007
"growth" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018996 "molting cycle, collagen and
cuticulin-based cuticle" evidence=IMP] [GO:0040011 "locomotion"
evidence=IMP] [GO:0000003 "reproduction" evidence=IMP] [GO:0040035
"hermaphrodite genitalia development" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0007281 "germ
cell development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0009792 GO:GO:0040007 GO:GO:0018991 GO:GO:0002119
GO:GO:0018996 GO:GO:0040011 GO:GO:0003676 GO:GO:0042127
GO:GO:0040035 GO:GO:0007281 GO:GO:0040020 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00530000062880 KO:K13025 OMA:EDWKFDT EMBL:FO081482
RefSeq:NP_490761.2 ProteinModelPortal:Q9BL61 SMR:Q9BL61
STRING:Q9BL61 PaxDb:Q9BL61 EnsemblMetazoa:Y65B4A.6 GeneID:190485
KEGG:cel:CELE_Y65B4A.6 UCSC:Y65B4A.6 CTD:190485 WormBase:Y65B4A.6
InParanoid:Q9BL61 NextBio:945920 Uniprot:Q9BL61
Length = 399
Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
Identities = 96/305 (31%), Positives = 152/305 (49%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L D++ QA+SG GKTA F ++ LQ L+T L++ TRELA QI K
Sbjct: 59 AILKARDVIAQAQSGTGKTATFSISVLQSLDTQVRETQALILSPTRELAVQIQKVVLALG 118
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
YM N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE
Sbjct: 119 DYM-NVQCHACIGGTNLGEDIRKLD-YGQHVVSGTPGRVFDMIRRRNLRTRAIKLLVLDE 176
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML + + + +I+R P QV++ SATL EI + KFM DP+ + V + +L
Sbjct: 177 ADEMLNK-GFKEQLYDIYRYLPPGAQVVLLSATLPHEILEMTSKFMTDPIRILVKRD-EL 234
Query: 325 TLHGLQQHYVXXXXXX-XXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
TL G++Q +V D L Q V+F + + L+ + E NF S
Sbjct: 235 TLEGIKQFFVAVDREEWKFDTLIDLYDTLTITQAVLFCNTRRKVDWLTDKMKEANFTVSS 294
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
+H M Q++R + K+F G S + A+ L+ Q ++ +LP+ +L
Sbjct: 295 MHGDMEQKDR---DEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINY-DLPNNRELYI 350
Query: 444 YIEGR 448
+ GR
Sbjct: 351 HRIGR 355
Score = 153 (58.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 29/83 (34%), Positives = 52/83 (62%)
Query: 66 KQKEVKGAYVSIHSSGFRDFLLKPEILRAI-VDCWRILVATNLFGRGMDIERVNIVFNYD 124
K KE S+H G + + E+++ R+L++T+++ RG+D+ +V++V NYD
Sbjct: 284 KMKEANFTVSSMH--GDMEQKDRDEVMKEFRAGTTRVLISTDVWARGLDVPQVSLVINYD 341
Query: 125 MPEDSDTYLHRVARAGRFGTKAV 147
+P + + Y+HR+ R+GRFG K V
Sbjct: 342 LPNNRELYIHRIGRSGRFGRKGV 364
Score = 62 (26.9 bits), Expect = 3.0e-10, Sum P(2) = 3.0e-10
Identities = 12/35 (34%), Positives = 21/35 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
KG+AI F ++D +IL +++ + I E+P I
Sbjct: 362 KGVAINFVK-QDDVRILRDIEQYYSTQIDEMPMNI 395
>UNIPROTKB|Q9UHI6 [details] [associations]
symbol:DDX20 "Probable ATP-dependent RNA helicase DDX20"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0006917 "induction of apoptosis" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IEA] [GO:0015030
"Cajal body" evidence=IEA] [GO:0043065 "positive regulation of
apoptotic process" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0000244 "assembly of spliceosomal tri-snRNP" evidence=TAS]
[GO:0005856 "cytoskeleton" evidence=TAS] [GO:0000387 "spliceosomal
snRNP assembly" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0016070 "RNA metabolic process"
evidence=TAS] [GO:0034660 "ncRNA metabolic process" evidence=TAS]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] Reactome:REACT_71 Reactome:REACT_21257
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0017053
GO:GO:0005654 GO:GO:0006917 GO:GO:0005856 GO:GO:0003677
GO:GO:0005681 GO:GO:0000244 GO:GO:0000122 GO:GO:0043065
GO:GO:0015030 GO:GO:0034660 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:AF171063 EMBL:AF106019 EMBL:AK001506
EMBL:AL049557 EMBL:BC011556 EMBL:AL133598 IPI:IPI00005904
PIR:T43476 RefSeq:NP_009135.4 UniGene:Hs.591405 PDB:2OXC PDB:3B7G
PDBsum:2OXC PDBsum:3B7G ProteinModelPortal:Q9UHI6 SMR:Q9UHI6
DIP:DIP-32606N IntAct:Q9UHI6 MINT:MINT-96973 STRING:Q9UHI6
PhosphoSite:Q9UHI6 DMDM:12643886 PaxDb:Q9UHI6 PeptideAtlas:Q9UHI6
PRIDE:Q9UHI6 DNASU:11218 Ensembl:ENST00000369702 GeneID:11218
KEGG:hsa:11218 UCSC:uc001ebs.3 CTD:11218 GeneCards:GC01P112298
HGNC:HGNC:2743 HPA:CAB015427 HPA:HPA005516 HPA:HPA023541 MIM:606168
neXtProt:NX_Q9UHI6 PharmGKB:PA27209 HOGENOM:HOG000112184
HOVERGEN:HBG051330 InParanoid:Q9UHI6 KO:K13131 OMA:VEDYEHY
OrthoDB:EOG4SF95N PhylomeDB:Q9UHI6 EvolutionaryTrace:Q9UHI6
GenomeRNAi:11218 NextBio:42699 ArrayExpress:Q9UHI6 Bgee:Q9UHI6
CleanEx:HS_DDX20 Genevestigator:Q9UHI6 GermOnline:ENSG00000064703
Uniprot:Q9UHI6
Length = 824
Score = 341 (125.1 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 96/294 (32%), Positives = 146/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 216
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + K+M DP V ++ +L G
Sbjct: 217 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMRDPTFVRLNSSDP-SLIG 275
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 276 LKQYYKVVNSYPLAHKVFEEKTQHLQELFSRIPFNQALVFSNLHSRAQHLADILSSKGFP 335
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
A I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 336 AECISGNMNQNQRLDAMAKLKHFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 388
Score = 152 (58.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 361 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 410
Score = 44 (20.5 bits), Expect = 6.2e-32, Sum P(2) = 6.2e-32
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 407 GLTVTYCCRGEEENMMMRIAQKCNINLLPLPDPI 440
>UNIPROTKB|F1SBP3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 OMA:VEDYEHY GeneTree:ENSGT00530000062880 EMBL:CU466482
RefSeq:XP_001928579.1 UniGene:Ssc.6364 Ensembl:ENSSSCT00000007430
GeneID:100152786 KEGG:ssc:100152786 Uniprot:F1SBP3
Length = 832
Score = 345 (126.5 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
Identities = 96/294 (32%), Positives = 147/294 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 106 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGVKME 165
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 166 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 223
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + K+M +P V ++ +L G
Sbjct: 224 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDP-SLIG 282
Query: 329 LQQHY-VXXXXXXXXXXXXXXXDVLE-------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V L+ FNQ ++F +R L+ +LS + FP
Sbjct: 283 LKQYYKVVNSYPLAHKIFEEKAQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFP 342
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
AV I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 343 AVCISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 395
Score = 152 (58.6 bits), Expect = 7.1e-07, Sum P(2) = 7.1e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 368 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 417
Score = 40 (19.1 bits), Expect = 6.3e-32, Sum P(2) = 6.3e-32
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + +++ LPD I
Sbjct: 414 GLTVTYCCRGEEENMMMKIAQKCHINLLLLPDPI 447
>UNIPROTKB|Q5ZKB9 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003723
GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962 GO:GO:0008026
eggNOG:COG0513 GeneTree:ENSGT00530000063986 HOGENOM:HOG000268797
OMA:YSHARMK InterPro:IPR014014 PROSITE:PS51195 HSSP:P26196
EMBL:AJ720165 IPI:IPI00595692 UniGene:Gga.2331
ProteinModelPortal:Q5ZKB9 SMR:Q5ZKB9 Ensembl:ENSGALT00000012405
HOVERGEN:HBG106685 InParanoid:Q5ZKB9 OrthoDB:EOG4J1182
ArrayExpress:Q5ZKB9 Uniprot:Q5ZKB9
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>UNIPROTKB|E1BDM8 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:DAAA02040478
EMBL:DAAA02040479 IPI:IPI00697295 RefSeq:NP_001137339.1
UniGene:Bt.12357 PRIDE:E1BDM8 Ensembl:ENSBTAT00000011952
GeneID:513906 KEGG:bta:513906 NextBio:20871085 Uniprot:E1BDM8
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>UNIPROTKB|E2RR01 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0033962 "cytoplasmic mRNA processing body
assembly" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:AAEX03003444
RefSeq:XP_849975.1 Ensembl:ENSCAFT00000019743 GeneID:479414
KEGG:cfa:479414 NextBio:20854600 Uniprot:E2RR01
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>UNIPROTKB|P26196 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IDA] [GO:0004386 "helicase activity" evidence=TAS]
[GO:0003724 "RNA helicase activity" evidence=TAS] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IDA]
[GO:0000288 "nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0005829 "cytosol"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016070 "RNA metabolic process" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0043928 "exonucleolytic
nuclear-transcribed mRNA catabolic process involved in
deadenylation-dependent decay" evidence=TAS] Reactome:REACT_71
Reactome:REACT_21257 InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0010467 GO:GO:0003723 GO:GO:0000932 GO:GO:0016442
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0010494
GO:GO:0033962 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
KO:K12614 OMA:YSHARMK GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043928 HOVERGEN:HBG106685 OrthoDB:EOG4J1182
EMBL:Z11685 EMBL:BC065007 EMBL:D17532 IPI:IPI00030320 PIR:S22651
RefSeq:NP_001244120.1 RefSeq:NP_004388.2 UniGene:Hs.408461 PDB:1VEC
PDB:2WAX PDB:2WAY PDBsum:1VEC PDBsum:2WAX PDBsum:2WAY
ProteinModelPortal:P26196 SMR:P26196 DIP:DIP-29195N IntAct:P26196
STRING:P26196 PhosphoSite:P26196 DMDM:116241327
DOSAC-COBS-2DPAGE:P26196 PaxDb:P26196 PeptideAtlas:P26196
PRIDE:P26196 DNASU:1656 Ensembl:ENST00000264018
Ensembl:ENST00000526070 Ensembl:ENST00000534980 GeneID:1656
KEGG:hsa:1656 UCSC:uc001pub.2 CTD:1656 GeneCards:GC11M118654
HGNC:HGNC:2747 HPA:CAB004668 HPA:HPA024201 HPA:HPA026644 MIM:600326
neXtProt:NX_P26196 PharmGKB:PA27229 InParanoid:P26196
PhylomeDB:P26196 ChiTaRS:DDX6 EvolutionaryTrace:P26196
GenomeRNAi:1656 NextBio:6820 ArrayExpress:P26196 Bgee:P26196
CleanEx:HS_DDX6 Genevestigator:P26196 GermOnline:ENSG00000110367
Uniprot:P26196
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>UNIPROTKB|F1SAJ5 [details] [associations]
symbol:DDX6 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 CTD:1656 EMBL:FP089499
RefSeq:XP_003129962.1 RefSeq:XP_003357372.1 UniGene:Ssc.97711
Ensembl:ENSSSCT00000016463 GeneID:100515499 KEGG:ssc:100515499
Uniprot:F1SAJ5
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>MGI|MGI:104976 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 6"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=ISO] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=ISO] [GO:0016442 "RNA-induced silencing complex"
evidence=ISO] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0033962 "cytoplasmic mRNA processing body assembly"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:104976 GO:GO:0005524
GO:GO:0003723 GO:GO:0000932 GO:GO:0016442 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0010494 GO:GO:0033962
GO:GO:0008026 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 KO:K12614 OMA:YSHARMK InterPro:IPR014014
PROSITE:PS51195 HOVERGEN:HBG106685 OrthoDB:EOG4J1182 CTD:1656
EMBL:D50494 EMBL:AK054144 EMBL:AK148483 EMBL:BC021452 EMBL:AF038995
IPI:IPI00109932 RefSeq:NP_001104296.1 RefSeq:NP_031867.1
RefSeq:NP_851841.2 UniGene:Mm.267061 ProteinModelPortal:P54823
SMR:P54823 IntAct:P54823 STRING:P54823 PhosphoSite:P54823
PaxDb:P54823 PRIDE:P54823 Ensembl:ENSMUST00000170489 GeneID:13209
KEGG:mmu:13209 UCSC:uc009pdy.2 InParanoid:P54823 NextBio:283376
Bgee:P54823 CleanEx:MM_DDX6 Genevestigator:P54823
GermOnline:ENSMUSG00000032097 Uniprot:P54823
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>RGD|1564560 [details] [associations]
symbol:Ddx6 "DEAD (Asp-Glu-Ala-Asp) box helicase 6"
species:10116 "Rattus norvegicus" [GO:0000932 "cytoplasmic mRNA
processing body" evidence=IEA;ISO] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0010494 "cytoplasmic stress
granule" evidence=IEA;ISO] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA;ISO] [GO:0033962 "cytoplasmic mRNA processing
body assembly" evidence=IEA;ISO] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 RGD:1564560
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CH473975 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 OrthoDB:EOG4J1182 CTD:1656
IPI:IPI00558056 RefSeq:NP_001102762.1 UniGene:Rn.231713
Ensembl:ENSRNOT00000017391 GeneID:500988 KEGG:rno:500988
UCSC:RGD:1564560 NextBio:707903 Uniprot:D3ZD73
Length = 483
Score = 326 (119.8 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 76/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 DKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 8.2e-32, Sum P(2) = 8.2e-32
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>MGI|MGI:1858415 [details] [associations]
symbol:Ddx20 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 20"
species:10090 "Mus musculus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IDA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006917 "induction
of apoptosis" evidence=IPI] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0017053
"transcriptional repressor complex" evidence=IDA] [GO:0019904
"protein domain specific binding" evidence=ISO] [GO:0043065
"positive regulation of apoptotic process" evidence=IMP]
[GO:0045892 "negative regulation of transcription, DNA-dependent"
evidence=ISO] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1858415 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0008380
GO:GO:0003677 GO:GO:0006397 GO:GO:0005681 GO:GO:0000122
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:CH466608 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 CTD:11218 HOGENOM:HOG000112184 HOVERGEN:HBG051330
KO:K13131 OMA:VEDYEHY OrthoDB:EOG4SF95N EMBL:AJ250027 EMBL:AF220454
EMBL:BC125471 EMBL:BC137721 IPI:IPI00122400 RefSeq:NP_059093.3
UniGene:Mm.272826 ProteinModelPortal:Q9JJY4 SMR:Q9JJY4
IntAct:Q9JJY4 STRING:Q9JJY4 PhosphoSite:Q9JJY4 PaxDb:Q9JJY4
PRIDE:Q9JJY4 Ensembl:ENSMUST00000090680 GeneID:53975 KEGG:mmu:53975
GeneTree:ENSGT00530000062880 InParanoid:Q059Z6 NextBio:310865
Bgee:Q9JJY4 CleanEx:MM_DDX20 Genevestigator:Q9JJY4
GermOnline:ENSMUSG00000027905 Uniprot:Q9JJY4
Length = 825
Score = 334 (122.6 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 94/294 (31%), Positives = 145/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 100 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 159
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 160 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 217
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + ++M DP V ++ +L G
Sbjct: 218 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEVLANALTRYMRDPTFVRLNPSDP-SLIG 276
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 277 LKQYYQVVNSYPLAHKIFEEKTQHLQELFSKVPFNQALVFSNLHSRAQHLADILSSKGFP 336
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 337 TECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 389
Score = 152 (58.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 362 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 411
Score = 44 (20.5 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 408 GLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 441
>UNIPROTKB|E1C8R1 [details] [associations]
symbol:DDX6 "Probable ATP-dependent RNA helicase DDX6"
species:9031 "Gallus gallus" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 KO:K12614 InterPro:IPR014014
PROSITE:PS51195 UniGene:Gga.2331 CTD:1656 EMBL:AADN02058042
EMBL:AADN02058043 IPI:IPI00818395 RefSeq:NP_001006319.2
PRIDE:E1C8R1 Ensembl:ENSGALT00000040594 GeneID:419783
KEGG:gga:419783 NextBio:20822787 ArrayExpress:E1C8R1 Uniprot:E1C8R1
Length = 483
Score = 321 (118.1 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 75/257 (29%), Positives = 134/257 (52%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+ + SK
Sbjct: 130 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSK 189
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 190 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVEHVQMIVLDEA 248
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
+K+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 249 NKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--LT 305
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 306 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 365
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 366 AKMRQEHRNRVFHDFRN 382
Score = 147 (56.8 bits), Expect = 5.3e-07, Sum P(2) = 5.3e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 386 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 429
Score = 40 (19.1 bits), Expect = 3.6e-31, Sum P(2) = 3.6e-31
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 81 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 116
>UNIPROTKB|F1MAM8 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 CTD:11218
KO:K13131 GeneTree:ENSGT00530000062880 IPI:IPI00947925
RefSeq:NP_001178640.1 UniGene:Rn.137424 Ensembl:ENSRNOT00000068152
GeneID:84473 KEGG:rno:84473 NextBio:616964 ArrayExpress:F1MAM8
Uniprot:F1MAM8
Length = 824
Score = 333 (122.3 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 94/294 (31%), Positives = 145/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 216
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + ++M DP V ++ +L G
Sbjct: 217 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDP-SLIG 275
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 276 LKQYYQVVNSYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFP 335
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 336 TECISGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 388
Score = 152 (58.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 361 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 410
Score = 44 (20.5 bits), Expect = 4.5e-31, Sum P(2) = 4.5e-31
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 407 GLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 440
>CGD|CAL0001638 [details] [associations]
symbol:FAL1 species:5476 "Candida albicans" [GO:0005730
"nucleolus" evidence=IEA] [GO:0097078 "FAl1-SGD1 complex"
evidence=IEA] [GO:0000462 "maturation of SSU-rRNA from tricistronic
rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 CGD:CAL0001638 GO:GO:0005524 GO:GO:0005730
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:AACQ01000041 EMBL:AACQ01000040 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 EMBL:AJ250879
RefSeq:XP_718509.1 RefSeq:XP_718592.1 ProteinModelPortal:Q5A9Z6
SMR:Q5A9Z6 GeneID:3639739 GeneID:3639839 KEGG:cal:CaO19.10024
KEGG:cal:CaO19.2488 KO:K13025 Uniprot:Q5A9Z6
Length = 399
Score = 341 (125.1 bits), Expect = 5.4e-31, P = 5.4e-31
Identities = 81/256 (31%), Positives = 135/256 (52%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D + QA+SG GKTA F + L+ ++T L++ TRELA QI + Y
Sbjct: 61 ISGRDTIAQAQSGTGKTATFSIGMLEVIDTKSKECQALILSPTRELAIQIQNVVKHLGDY 120
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M NI GG + +D + L+ QIV GTPGR++ +++ + L +K ILDE D
Sbjct: 121 M-NIHTHACIGGKNVGEDVKKLQ-QGQQIVSGTPGRVIDVIKRRNLQTRNIKVLILDEAD 178
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
++ + + + EI++ P + QV++ SATL +E+ + KF DP+++ V + +++L
Sbjct: 179 ELFTK-GFKEQIYEIYKHLPPSVQVVVVSATLPREVLEMTSKFTTDPVKILVKRD-EISL 236
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
G++Q+YV D L Q VIF + + L+ + +QNF V++H
Sbjct: 237 SGIKQYYVQCEREDWKFDTLCDLYDNLTITQAVIFCNTKLKVNWLADQMKKQNFTVVAMH 296
Query: 386 RGMTQEERLKKYQEFK 401
M Q+ER +F+
Sbjct: 297 GDMKQDERDSIMNDFR 312
Score = 152 (58.6 bits), Expect = 6.5e-08, P = 6.5e-08
Identities = 22/46 (47%), Positives = 39/46 (84%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
R+L++T+++ RG+D+++V++V NYD+P D + Y+HR+ R+GRFG K
Sbjct: 317 RVLISTDVWARGIDVQQVSLVINYDLPTDKENYIHRIGRSGRFGRK 362
>UNIPROTKB|F1MRW7 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0017053 "transcriptional repressor complex"
evidence=IEA] [GO:0006917 "induction of apoptosis" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:DAAA02007520 IPI:IPI00867090
UniGene:Bt.13425 Ensembl:ENSBTAT00000024914 Uniprot:F1MRW7
Length = 825
Score = 334 (122.6 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 95/294 (32%), Positives = 145/294 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 216
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + K+M +P V ++ +L G
Sbjct: 217 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEFLANALTKYMREPTFVRLNSSDP-SLIG 275
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 276 LKQYYKIVNSYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFP 335
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
A I M Q RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 336 AEYISGNMDQNRRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 388
Score = 154 (59.3 bits), Expect = 2.6e-07, Sum P(2) = 2.6e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 361 RVLISTDLTSRGIDAEKVNLVVNLDVPLDCETYMHRIGRAGRFGT---LGLTV 410
Score = 42 (19.8 bits), Expect = 5.8e-31, Sum P(2) = 5.8e-31
Identities = 7/34 (20%), Positives = 17/34 (50%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + +++ LPD I
Sbjct: 407 GLTVTYCCRGEEENMMMKIAQKCTINLLPLPDPI 440
>ZFIN|ZDB-GENE-030131-202 [details] [associations]
symbol:ddx20 "DEAD (Asp-Glu-Ala-Asp) box
polypeptide 20" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0005681 "spliceosomal complex"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-030131-202
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:BX664742 IPI:IPI00890438
Ensembl:ENSDART00000087037 Ensembl:ENSDART00000134226
Uniprot:F1R1C1
Length = 789
Score = 337 (123.7 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 93/289 (32%), Positives = 146/289 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L ++ VLV+ TRE+A QI M
Sbjct: 91 GLDLIVQAKSGTGKTCVFTTIALDSLILENATTQVLVLAPTREIAVQIHAVVMAIGSAME 150
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG PI +D+++LK + I +G+PGRI L+ L +S ++ F+LDE DK+
Sbjct: 151 GLECHVFIGGRPISQDKQHLKKCH--IAIGSPGRIKQLIEMGALMVSSIRLFVLDEADKL 208
Query: 269 LEQ---LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
LE + + I+ S P KQ++ SAT + + ++M +P V ++
Sbjct: 209 LEDDSSSSFQEQINWIYSSLPANKQMLALSATYPESLAQQLSRYMREPTFVRLNPTDPGL 268
Query: 326 LHGLQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQ 377
L GL+Q+Y V +LE FNQ ++F TR L+ +LS +
Sbjct: 269 L-GLKQYYKIVPSHSLPHKVFEEKVQSLLELFSKIPFNQALVFSNLHTRAQHLADILSSK 327
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNV 424
PAV I G++Q++RL+ + K + + I+ S DA+ +N V
Sbjct: 328 GLPAVCISGGLSQDQRLEAMWKLKQYQCRVLISTDLTSRGIDAEKVNLV 376
Score = 160 (61.4 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 31/79 (39%), Positives = 48/79 (60%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSG 159
R+L++T+L RG+D E+VN+V N D+P+D +TY+HR+ RAGRFGT V + C +
Sbjct: 356 RVLISTDLTSRGIDAEKVNLVINLDVPQDWETYMHRIGRAGRFGTLGV-AVTYCCHGEEE 414
Query: 160 MGKTAVFVLATLQQLETTD 178
A+ +L + D
Sbjct: 415 NKMMAIAQKCSLDLMHLPD 433
Score = 38 (18.4 bits), Expect = 5.9e-31, Sum P(2) = 5.9e-31
Identities = 7/34 (20%), Positives = 16/34 (47%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
G+A+T+ + + + + + + LPD I
Sbjct: 402 GVAVTYCCHGEEENKMMAIAQKCSLDLMHLPDPI 435
>UNIPROTKB|P54824 [details] [associations]
symbol:ddx6 "ATP-dependent RNA helicase ddx6" species:8355
"Xenopus laevis" [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=IDA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0005737 GO:GO:0003723
GO:GO:0030529 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 KO:K12614 InterPro:IPR014014 PROSITE:PS51195
HOVERGEN:HBG106685 CTD:1656 EMBL:X92421 EMBL:BC170228 EMBL:BC170230
RefSeq:NP_001083721.1 UniGene:Xl.157 IntAct:P54824 PRIDE:P54824
GeneID:399080 KEGG:xla:399080 Xenbase:XB-GENE-922237 Uniprot:P54824
Length = 481
Score = 318 (117.0 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 75/257 (29%), Positives = 133/257 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GK+ +++ L++L+ + +V+ TRELA Q+S+ + SK
Sbjct: 129 ALSGRDILARAKNGTGKSGAYLIPLLERLDLKKDCIQAMVIVPTRELALQVSQICIQVSK 188
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+M KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 189 HMGGAKVMATTGGTNLRDDIMRLDD-TVHVVIATPGRILDLIKKGVAKVDHIQMIVLDEA 247
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + +++I + P +Q++++SAT ++ + P E+ + +E LT
Sbjct: 248 DKLLSQ-DFMQIMEDIIMTLPKNRQILLYSATFPLSVQKFMTLHLQKPYEINLMEE--LT 304
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ +S+ + IH
Sbjct: 305 LKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYIH 364
Query: 386 RGMTQEERLKKYQEFKD 402
M QE R + + +F++
Sbjct: 365 AKMRQEHRNRVFHDFRN 381
Score = 147 (56.8 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 26/44 (59%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG
Sbjct: 385 RNLVCTDLFTRGIDIQAVNVVINFDFPKLAETYLHRIGRSGRFG 428
Score = 40 (19.1 bits), Expect = 8.0e-31, Sum P(2) = 8.0e-31
Identities = 12/36 (33%), Positives = 18/36 (50%)
Query: 66 KQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDC-W 99
K +K + V S + F D+ LK E+L I + W
Sbjct: 80 KDLRIKTSDVTSTKGNEFEDYCLKRELLMGIFEMGW 115
>TIGR_CMR|SO_4034 [details] [associations]
symbol:SO_4034 "ATP-dependent RNA helicase DeaD"
species:211586 "Shewanella oneidensis MR-1" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0009631 "cold
acclimation" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE014299 GenomeReviews:AE014299_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:LPQGMPK RefSeq:NP_719564.1
ProteinModelPortal:Q8EA75 GeneID:1171660 KEGG:son:SO_4034
PATRIC:23527732 ProtClustDB:CLSK907463 Uniprot:Q8EA75
Length = 623
Score = 345 (126.5 bits), Expect = 9.5e-31, P = 9.5e-31
Identities = 79/266 (29%), Positives = 143/266 (53%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL QA++G GKT F L L ++ T+ + +LV+ TRELA Q+++ + ++K+M
Sbjct: 43 GKDILGQAQTGTGKTGAFALPLLNKV-TSQTTPQILVLAPTRELAVQVAEAFSSYAKFMK 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N V +GG +Q+ LK PQ++VGTPGR++ +R L L L+ +LDE D+M
Sbjct: 102 NFHVLPIYGGQSMQQQLNALK-RGPQVIVGTPGRVMDHMRRGTLKLETLQALVLDEADEM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I +P +Q+ +FSAT+ ++I+ V K + + + + + T+
Sbjct: 161 LK-MGFIDDIEWILEHTPPQRQLALFSATMPEQIKRVANKHLKNATNISIA-ASHTTVDS 218
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q +V +V ++IFV++ C+ L+ L + + + +H M
Sbjct: 219 IEQRFVQVSQHNKLEALVRVLEVENTEGIIIFVRTRNSCVELAEKLEARGYASSPLHGDM 278
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q+ R + ++ K+ L I A+D
Sbjct: 279 NQQARERAVEQLKNGK--LDILIATD 302
Score = 135 (52.6 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
IL+AT++ RG+D+ER+ V NYD+P D++ Y+HR+ R GR G GM IL
Sbjct: 297 ILIATDVAARGLDVERIGHVVNYDIPYDTEAYVHRIGRTGRAGRT---GMAIL 346
>UNIPROTKB|Q81QF0 [details] [associations]
symbol:BAS2301 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 80/254 (31%), Positives = 134/254 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QAK+G GKT FVL L++++ S+V L++ TRELA QI+ E ++
Sbjct: 42 GKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQRE 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+I V +GG + + LK N IVV TPGR+L +R + ++LS L +LDE D+M
Sbjct: 102 DINVLAIYGGQDVAQQLRKLKG-NTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L D+++I +P +KQ M+FSAT+ K+I+ + K++M +P + V E ++T+
Sbjct: 161 L-YFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDT 218
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q + D + VIF ++ R L L + +H +
Sbjct: 219 IEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDI 278
Query: 389 TQEERLKKYQEFKD 402
Q +R + + F++
Sbjct: 279 PQAKRERVMKSFRE 292
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
L+AT++ RG+D++ V VFNYD+PED ++Y+HR+ R GR G
Sbjct: 298 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAG 339
>TIGR_CMR|BA_2475 [details] [associations]
symbol:BA_2475 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_844851.1
RefSeq:YP_019115.1 RefSeq:YP_028562.1 ProteinModelPortal:Q81QF0
DNASU:1085525 EnsemblBacteria:EBBACT00000011128
EnsemblBacteria:EBBACT00000014583 EnsemblBacteria:EBBACT00000019769
GeneID:1085525 GeneID:2816610 GeneID:2853183 KEGG:ban:BA_2475
KEGG:bar:GBAA_2475 KEGG:bat:BAS2301 OMA:DNKGRPG
ProtClustDB:CLSK916648 BioCyc:BANT260799:GJAJ-2367-MONOMER
BioCyc:BANT261594:GJ7F-2455-MONOMER Uniprot:Q81QF0
Length = 450
Score = 337 (123.7 bits), Expect = 1.4e-30, P = 1.4e-30
Identities = 80/254 (31%), Positives = 134/254 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ QAK+G GKT FVL L++++ S+V L++ TRELA QI+ E ++
Sbjct: 42 GKDIIGQAKTGTGKTLAFVLPILEKIDPESSDVQALIVAPTRELALQITTEIKKMLVQRE 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+I V +GG + + LK N IVV TPGR+L +R + ++LS L +LDE D+M
Sbjct: 102 DINVLAIYGGQDVAQQLRKLKG-NTHIVVATPGRLLDHIRRETIDLSNLSTIVLDEADQM 160
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L D+++I +P +KQ M+FSAT+ K+I+ + K++M +P + V E ++T+
Sbjct: 161 L-YFGFLYDIEDILDETPGSKQTMLFSATIPKDIKKLAKRYMDEPQMIQVQSE-EVTVDT 218
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q + D + VIF ++ R L L + +H +
Sbjct: 219 IEQRVIETTDRAKPDALRFVMDRDQPFLAVIFCRTKVRASKLYDNLKGLGYNCAELHGDI 278
Query: 389 TQEERLKKYQEFKD 402
Q +R + + F++
Sbjct: 279 PQAKRERVMKSFRE 292
Score = 133 (51.9 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 22/42 (52%), Positives = 33/42 (78%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
L+AT++ RG+D++ V VFNYD+PED ++Y+HR+ R GR G
Sbjct: 298 LIATDVAARGLDVDGVTHVFNYDIPEDVESYIHRIGRTGRAG 339
>TIGR_CMR|GSU_0189 [details] [associations]
symbol:GSU_0189 "ATP-dependent RNA helicase DbpA"
species:243231 "Geobacter sulfurreducens PCA" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE017180 GenomeReviews:AE017180_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:NP_951250.1
ProteinModelPortal:Q74GQ7 GeneID:2687824 KEGG:gsu:GSU0189
PATRIC:22023124 OMA:VAIASHC BioCyc:GSUL243231:GH27-128-MONOMER
Uniprot:Q74GQ7
Length = 460
Score = 336 (123.3 bits), Expect = 1.8e-30, P = 1.8e-30
Identities = 80/269 (29%), Positives = 137/269 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ +AK+G GKTA F + L +L+ V LV+C TRELA Q+ KE R +++
Sbjct: 41 GKDVIARAKTGSGKTAAFGIGLLSRLDALSFRVQALVLCPTRELADQVGKELRRLARFTD 100
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIK+ GG+P L+ H +V+GTPGR+L +R L+LS L+ +LDE D+M
Sbjct: 101 NIKILTICGGVPFGPQLGSLE-HGAHVVIGTPGRLLDHLRRGSLDLSALRTLVLDEADRM 159
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + + D+ + ++P +Q ++FSAT I + +P+EV VD+ +HG
Sbjct: 160 LD-MGFQDDISALIAAAPPKRQTLLFSATYPDSIAAMSAGVQREPVEVSVDE-----VHG 213
Query: 329 ---LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
++Q + +IF + C ++ L+ + + A++IH
Sbjct: 214 EGAIEQVFYEVDSGQRIEAVERILGHYRPESALIFCNTKLECQEVANALAVRGYAALAIH 273
Query: 386 RGMTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q ER + F + + ++ A+D
Sbjct: 274 GDLDQRERDRVLVRFAN--RSASVLVATD 300
>TIGR_CMR|SO_1383 [details] [associations]
symbol:SO_1383 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 RefSeq:NP_717003.1
ProteinModelPortal:Q8EH47 GeneID:1169204 KEGG:son:SO_1383
PATRIC:23522420 OMA:SEVVHGE ProtClustDB:CLSK906234 Uniprot:Q8EH47
Length = 433
Score = 298 (110.0 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 82/260 (31%), Positives = 131/260 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-----ETTDSNVYVLVMCHTRELAFQISKEYERF 203
G D+L A++G GKTA F L LQ++ ET SN VL++ TRELA Q+++ E +
Sbjct: 38 GQDVLASAQTGTGKTAAFALPILQKMVENPSETLKSNTRVLILTPTRELAAQVAENVEAY 97
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
SKY+ N V +GG+ ++ + LK I+V TPGR+L + L+LS + +LD
Sbjct: 98 SKYL-NFSVLTIYGGVKVETQAQKLK-RGADIIVATPGRLLEHLTACNLSLSSVDFLVLD 155
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
E D+ML+ + D+Q+I ++ +Q ++FSAT S ++ + + M P +V D+
Sbjct: 156 EADRMLD-MGFSADIQKILQAVNKKRQNLLFSATFSSAVKKLANEMMIKP-QVISADKQN 213
Query: 324 LTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF---P 380
T + Q + QV++F + TR A TL+ E N P
Sbjct: 214 TTADTVSQVVYPVEQRRKRELLSELIGKKNWQQVLVF--TATRDAA-DTLVKELNLDGIP 270
Query: 381 AVSIHRGMTQEERLKKYQEF 400
+ +H Q R + +EF
Sbjct: 271 SEVVHGEKAQGSRRRALREF 290
Score = 116 (45.9 bits), Expect = 0.00076, P = 0.00076
Identities = 32/92 (34%), Positives = 48/92 (52%)
Query: 60 AGDALAKQKEVKGAYVSI-H---SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIE 115
A D L K+ + G + H + G R L+ E + V R+LVAT + RG+DI
Sbjct: 256 AADTLVKELNLDGIPSEVVHGEKAQGSRRRALR-EFVSGKV---RVLVATEVAARGLDIP 311
Query: 116 RVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+ V N+D+P ++ Y+HR+ R GR G V
Sbjct: 312 SLEYVVNFDLPFLAEDYVHRIGRTGRAGKSGV 343
Score = 53 (23.7 bits), Expect = 2.0e-30, Sum P(2) = 2.0e-30
Identities = 11/17 (64%), Positives = 11/17 (64%)
Query: 82 FRDFLLKPEILRAIVDC 98
F F PEILRAI DC
Sbjct: 3 FESFSFCPEILRAISDC 19
>UNIPROTKB|E9PSX0 [details] [associations]
symbol:Ddx20 "Protein Ddx20" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917 "induction of
apoptosis" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0017053 "transcriptional repressor
complex" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 RGD:621744 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 IPI:IPI00554119
Ensembl:ENSRNOT00000020984 ArrayExpress:E9PSX0 Uniprot:E9PSX0
Length = 826
Score = 326 (119.8 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 94/296 (31%), Positives = 147/296 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L + + +L++ TRE+A QI M
Sbjct: 99 GLDLIVQAKSGTGKTCVFSTIALDSLILENYSTQILILAPTREIAVQIHSVITAIGIKME 158
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN ++ FILDE DK+
Sbjct: 159 GLECHVFIGGTPLSQDKTRLKKCH--IAVGSPGRIKQLIELDYLNPGSIRLFILDEADKL 216
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P +KQ++ SAT + + ++M DP V ++ +L G
Sbjct: 217 LEEGSFQEQINWIYSSLPASKQMLAVSATYPEILANALTRYMRDPTFVRLNPSDP-SLIG 275
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +LS + FP
Sbjct: 276 LKQYYQVVNSYPLAHKIFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLADILSSKGFP 335
Query: 381 A--VSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
+S + M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 336 TECISGNGNMNQNQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVVN-LDVPL 390
Score = 152 (58.6 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 363 RVLISTDLTSRGIDAEKVNLVVNLDVPLDWETYMHRIGRAGRFGT---LGLTV 412
Score = 44 (20.5 bits), Expect = 2.6e-30, Sum P(2) = 2.6e-30
Identities = 7/34 (20%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL +T+ + ++ + + ++++ LPD I
Sbjct: 409 GLTVTYCCRGEEENMMMKIAQKCNINLLPLPDPI 442
>UNIPROTKB|F1RZ83 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9823 "Sus scrofa" [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0045727 "positive regulation of
translation" evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IEA] [GO:0000184
"nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 OMA:EDWKFDT
EMBL:CU655945 Ensembl:ENSSSCT00000018679 ArrayExpress:F1RZ83
Uniprot:F1RZ83
Length = 411
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 91/294 (30%), Positives = 144/294 (48%)
Query: 156 AKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIKVGVF 215
++SG GKTA F ++ LQ L+ L++ TRELA QI K YM N++
Sbjct: 82 SQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM-NVQCHAC 140
Query: 216 FGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLEQLEMR 275
GG + +D L + +V GTPGR+ ++R + L +K +LDE D+ML + +
Sbjct: 141 IGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEMLNK-GFK 198
Query: 276 RDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQQHYVX 335
+ +++R P QV++ SATL EI + KFM DP+ + V + +LTL G++Q +V
Sbjct: 199 EQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-ELTLEGIKQFFVA 257
Query: 336 XXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERL 394
D L Q VIF + + L+ + E NF S+H M Q+ER
Sbjct: 258 VEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKER- 316
Query: 395 KKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
K+F G + S + A+ L+ Q ++ +LP+ +L + GR
Sbjct: 317 --ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYIHRIGR 367
Score = 144 (55.7 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 329 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 376
Score = 61 (26.5 bits), Expect = 4.6e-09, Sum P(2) = 4.6e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 374 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 410
>TIGR_CMR|CPS_1125 [details] [associations]
symbol:CPS_1125 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 KO:K11927 RefSeq:YP_267868.1
ProteinModelPortal:Q486Z7 STRING:Q486Z7 GeneID:3520292
KEGG:cps:CPS_1125 PATRIC:21465509 OMA:AYSKYLR
BioCyc:CPSY167879:GI48-1206-MONOMER Uniprot:Q486Z7
Length = 466
Score = 333 (122.3 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 96/300 (32%), Positives = 152/300 (50%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETT------DSNVYVLVMCHTRELAFQISKEY 200
+ G D++ A++G GKTA F L LQ+L ++ +NV L++ TRELA QIS+
Sbjct: 41 ISGRDVMAAAQTGTGKTAGFTLPLLQRLSSSKGNKVSSNNVRALILTPTRELAAQISESI 100
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
E + KY+ N+ V FGG+ I L+ ++V TPGR+L L + + S L+ F
Sbjct: 101 EVYGKYL-NLHSMVVFGGVKINPQIARLR-QGVDVLVATPGRLLDLYNQRAVKFSQLEVF 158
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
ILDE D+ML+ + RD++++ + P +Q ++FSAT S EIR + K +++P+E+ VD
Sbjct: 159 ILDEADRMLD-MGFIRDIKKLMTALPKDRQNLLFSATFSPEIRALAKGMVNNPLEISVDA 217
Query: 321 EAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
E T + Q + QV++F K+ L+ L +
Sbjct: 218 ENS-TAEKVTQWLTAVDKKRKPAVLTHLIKENNWQQVLVFTKTKHGANKLTKHLEAEGLT 276
Query: 381 AVSIHRGMTQEERLKKYQEFKDFH-KGLAIT-FASDENDAKILNNVQDRFDVSISELPDE 438
A +IH +Q R K FKD K L T A+ D +L V + FD + +P++
Sbjct: 277 AAAIHGNKSQGARTKALAAFKDGSVKILVATDIAARGIDIDLLPQVVN-FD--LPNVPED 333
>UNIPROTKB|F1NRN3 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00820769
ProteinModelPortal:F1NRN3 Ensembl:ENSGALT00000002285 Uniprot:F1NRN3
Length = 676
Score = 325 (119.5 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 94/294 (31%), Positives = 143/294 (48%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L VL++ TRE+A QI M
Sbjct: 58 GLDLIVQAKSGTGKTCVFSTIALDALLLDSPATQVLILAPTREIAVQIHAVITTIGIKME 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ VF GG P+ +D+ LK + I VG+PGRI L+ LN + ++ FILDE DK+
Sbjct: 118 GLECHVFIGGTPLSQDKVRLKKCH--IAVGSPGRIKQLIELDYLNTASIRLFILDEADKL 175
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
LE+ + + I+ S P KQ++ SAT + + +M +P V ++ +L G
Sbjct: 176 LEEGSFQEQINWIYSSLPANKQMLAVSATYPESLANALTMYMREPTFVRLNPTDP-SLIG 234
Query: 329 LQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQNFP 380
L+Q+Y V + E FNQ ++F +R L+ +L+ + FP
Sbjct: 235 LKQYYKIVNSHPLPHKTFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRGFP 294
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
A I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 295 AECISGSMNQSQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVIN-LDVPV 347
Score = 155 (59.6 bits), Expect = 3.0e-07, Sum P(2) = 3.0e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 320 RVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGT---LGLSV 369
Score = 38 (18.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL++T+ + ++ + + ++ + LP+ I
Sbjct: 366 GLSVTYCCRGEEENMMMKIAQKCNLQLLPLPEPI 399
>UNIPROTKB|Q5L3G9 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:235909 "Geobacillus kaustophilus HTA426" [GO:0003723 "RNA
binding" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=ISS]
[GO:0043590 "bacterial nucleoid" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0043590 HOGENOM:HOG000268810 KO:K05592
OMA:IIDHINR HSSP:Q58083 EMBL:BA000043 RefSeq:YP_146079.1
ProteinModelPortal:Q5L3G9 GeneID:3184893 GenomeReviews:BA000043_GR
KEGG:gka:GK0226 PATRIC:21961545 ProtClustDB:CLSK712472
BioCyc:GKAU235909:GJO7-260-MONOMER Uniprot:Q5L3G9
Length = 467
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 79/264 (29%), Positives = 142/264 (53%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ QA++G GKTA F + ++++ +S V LV+ TRELA Q+S+E + + +
Sbjct: 41 DVIGQAQTGTGKTAAFGIPIVEKVNVKNSAVQALVVAPTRELAIQVSEELYKIGA-VKRV 99
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
+V +GG I++ LK H P ++VGTPGRI+ + L L + +LDE D+ML
Sbjct: 100 RVLPIYGGQDIERQIRALKKH-PHVIVGTPGRIIDHINRGTLRLEHVHTVVLDEADEMLN 158
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ D++ I P +Q ++FSAT+ IR + ++FM++P V V + ++T+ +Q
Sbjct: 159 -MGFIEDIEAILSHVPAERQTLLFSATMPDPIRRIAERFMNEPELVKVKAK-EMTVPNIQ 216
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q+Y+ D+ ++F ++ R L+ L+ + + A IH ++Q
Sbjct: 217 QYYLEVHEKKKFDILTRLLDIQAPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLSQ 276
Query: 391 EERLKKYQEFKDFHKGLAITFASD 414
+RL ++FK+ + I A+D
Sbjct: 277 AKRLSVLRKFKE--GAIEILVATD 298
Score = 134 (52.2 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 33/88 (37%), Positives = 50/88 (56%)
Query: 62 DALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVD-CWRILVATNLFGRGMDIERVNI 119
D LA+ ++G A IH G + +LR + ILVAT++ RG+DI V
Sbjct: 254 DELAEALNLRGYAAEGIH--GDLSQAKRLSVLRKFKEGAIEILVATDVAARGLDISGVTH 311
Query: 120 VFNYDMPEDSDTYLHRVARAGRFGTKAV 147
V+N+D+P+D ++Y+HR+ R GR G V
Sbjct: 312 VYNFDIPQDPESYVHRIGRTGRAGKTGV 339
>UNIPROTKB|F6R6M7 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 InterPro:IPR014001 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 EMBL:BX001040
EMBL:BX248516 EMBL:BX927320 EMBL:CR753820 EMBL:CR753864
HGNC:HGNC:13917 ChiTaRS:DDX39B EMBL:CR942185 IPI:IPI00642880
SMR:F6R6M7 Ensembl:ENST00000416183 Ensembl:ENST00000428291
Ensembl:ENST00000428450 Ensembl:ENST00000432433
Ensembl:ENST00000432466 Ensembl:ENST00000433291
Ensembl:ENST00000442717 Uniprot:F6R6M7
Length = 197
Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
Identities = 93/189 (49%), Positives = 111/189 (58%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC F +++
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDCG--------FEHPSEVQHE 74
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAV----FVLATLQQ 173
I D A++G G AV + L Q + G+ F ++
Sbjct: 75 CIP---QAILGMDVLCQ--AKSG-MGKTAVFVLATLQQLEPVTGQVCFCDSHFPRGDNEE 128
Query: 174 LETTDSNVY------VLVMCHTRELAFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEY 227
L +VY VLVMCHTRELAFQISKEYERFSKYM N+KV VFFGGL I+KDEE
Sbjct: 129 LHLPYVSVYFLPKVSVLVMCHTRELAFQISKEYERFSKYMPNVKVAVFFGGLSIKKDEEV 188
Query: 228 LKTHNPQIV 236
LK + P IV
Sbjct: 189 LKKNCPHIV 197
>ZFIN|ZDB-GENE-070912-83 [details] [associations]
symbol:ddx6 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
6" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-070912-83 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00530000063986 InterPro:IPR014014 PROSITE:PS51195
EMBL:CR759774 IPI:IPI00505165 ProteinModelPortal:E7FD91
Ensembl:ENSDART00000087382 Bgee:E7FD91 Uniprot:E7FD91
Length = 485
Score = 314 (115.6 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 77/258 (29%), Positives = 134/258 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETT-DSNVYVLVMCHTRELAFQISKEYERFS 204
A+ G DIL +AK+G GK+ +++ L++++ DS +V+ TRELA Q+S+ + S
Sbjct: 131 ALSGRDILARAKNGTGKSGAYLIPLLERIDLKKDSIQAAVVIVPTRELALQVSQICIQVS 190
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
K+M +KV GG ++ D L +V+ TPGRIL L++ + ++ +LDE
Sbjct: 191 KHMGGVKVMATTGGTNLRDDIMRLD-ETVHVVIATPGRILDLIKKGVAKVGQVQMIVLDE 249
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L Q + + ++EI S +Q++++SAT ++ + P E+ + +E L
Sbjct: 250 ADKLLSQ-DFVQMMEEILSSLSKQRQILLYSATFPLSVQKFMNSHLQKPYEINLMEE--L 306
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF S R L+ +S+ + I
Sbjct: 307 TLKGVTQYYAYVTERQKVHCLNTLFSRLQINQSIIFCNSSQRVELLAKKISQLGYSCFYI 366
Query: 385 HRGMTQEERLKKYQEFKD 402
H M QE R + + +F++
Sbjct: 367 HAKMRQEHRNRVFHDFRN 384
Score = 146 (56.5 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 26/44 (59%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV T+LF RG+DI+ VN+V N+D P+ +TYLHR+ R+GRFG
Sbjct: 388 RNLVCTDLFTRGIDIQAVNVVINFDFPKLGETYLHRIGRSGRFG 431
Score = 37 (18.1 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 8/19 (42%), Positives = 11/19 (57%)
Query: 82 FRDFLLKPEILRAIVDC-W 99
F D+ LK E+L I + W
Sbjct: 99 FEDYCLKRELLMGIFEMGW 117
>ASPGD|ASPL0000036135 [details] [associations]
symbol:AN10417 species:162425 "Emericella nidulans"
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IEA] [GO:0003724 "RNA
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0030996 "cell
cycle arrest in response to nitrogen starvation" evidence=IEA]
[GO:0034063 "stress granule assembly" evidence=IEA] [GO:0033962
"cytoplasmic mRNA processing body assembly" evidence=IEA]
[GO:0000290 "deadenylation-dependent decapping of
nuclear-transcribed mRNA" evidence=IEA] [GO:0031142 "induction of
conjugation upon nitrogen starvation" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001306 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HOGENOM:HOG000268797 InterPro:IPR014014 PROSITE:PS51195 OMA:HIDPARF
EnsemblFungi:CADANIAT00009573 Uniprot:C8VHA5
Length = 498
Score = 332 (121.9 bits), Expect = 6.8e-30, P = 6.8e-30
Identities = 82/258 (31%), Positives = 132/258 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKTA FV+ TL+++ + L++ TRELA Q S + K
Sbjct: 73 ALTGRDILARAKNGTGKTAAFVIPTLERINPKSTKTQALILVPTRELALQTSHVCKTLGK 132
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNP-QIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
++ I V V GG + D ++ ++ I+VGTPGR+L L +LS F++DE
Sbjct: 133 HLG-INVMVTTGGTGLMDD--IIRLNDAVHILVGTPGRVLDLASKGVADLSECPTFVMDE 189
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L E ++++ P +QVM+FSAT ++ + M +P E+ + DE L
Sbjct: 190 ADKLLSP-EFTPVIEQLLSFHPKDRQVMLFSATFPMIVKSFKDRHMRNPYEINLMDE--L 246
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
TL G+ Q+Y L+ NQ +IF S R L+ ++E +
Sbjct: 247 TLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELLAKKITELGYSCFYS 306
Query: 385 HRGMTQEERLKKYQEFKD 402
H M Q+ R + + +F++
Sbjct: 307 HARMLQQHRNRVFHDFRN 324
Score = 142 (55.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 24/44 (54%), Positives = 36/44 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV ++L RG+DI+ VN+V N+D P++++TYLHR+ R+GRFG
Sbjct: 328 RNLVCSDLLTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFG 371
>UNIPROTKB|F6U6E2 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00791495 SMR:F6U6E2 Ensembl:ENST00000412246
Ensembl:ENST00000413544 Ensembl:ENST00000414881
Ensembl:ENST00000419913 Ensembl:ENST00000423951
Ensembl:ENST00000426189 Ensembl:ENST00000456976 Uniprot:F6U6E2
Length = 125
Score = 197 (74.4 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 39/48 (81%), Positives = 42/48 (87%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTREL 192
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTREL
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTREL 125
Score = 160 (61.4 bits), Expect = 7.7e-30, Sum P(2) = 7.7e-30
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
>TAIR|locus:2008296 [details] [associations]
symbol:AT1G51380 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS] [GO:0009560
"embryo sac egg cell differentiation" evidence=RCA]
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0005730 EMBL:AC024261
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 EMBL:AC006085 KO:K13025
EMBL:AY058890 EMBL:AY079046 IPI:IPI00529522 PIR:H96551
RefSeq:NP_175549.1 UniGene:At.11244 ProteinModelPortal:Q9C8J1
SMR:Q9C8J1 PaxDb:Q9C8J1 PRIDE:Q9C8J1 EnsemblPlants:AT1G51380.1
GeneID:841562 KEGG:ath:AT1G51380 GeneFarm:1010 TAIR:At1g51380
InParanoid:Q9C8J1 OMA:DITNITH PhylomeDB:Q9C8J1
ProtClustDB:CLSN2912843 Genevestigator:Q9C8J1 GermOnline:AT1G51380
Uniprot:Q9C8J1
Length = 392
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 92/301 (30%), Positives = 152/301 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKT++ ++ Q + + V VLV+ +RELA Q K + + +
Sbjct: 59 GRDVIAQAQSGTGKTSMIAISVCQIVNISSRKVQVLVLSPSRELASQTEKTIQAIGAH-T 117
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NI+ GG I +D + L+ V GTPGR+ +++ L +K +LDE D+M
Sbjct: 118 NIQAHACIGGKSIGEDIKKLE-RGVHAVSGTPGRVYDMIKRGSLQTKAVKLLVLDESDEM 176
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + ++ + +++R+ PH QV + SATL +EI + +KFM DP+ + V + +LTL G
Sbjct: 177 LSK-GLKDQIYDVYRALPHDIQVCLISATLPQEILEMTEKFMTDPVRILVKPD-ELTLEG 234
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q+YV L NQ +IF + + L+ + NF S+H
Sbjct: 235 IKQYYVDVDKEEWKFDTLCDLYGRLTINQAIIFCNTRQKVDWLTEKMRSSNFIVSSMHGD 294
Query: 388 MTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEG 447
Q+ER +F+ F + I ASD I +VQ V ++P+ +L + G
Sbjct: 295 KRQKERDDIMNQFRSFKSRVLI--ASDVWARGI--DVQTVSHVINYDIPNNPELYIHRIG 350
Query: 448 R 448
R
Sbjct: 351 R 351
Score = 140 (54.3 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 22/48 (45%), Positives = 38/48 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+A++++ RG+D++ V+ V NYD+P + + Y+HR+ RAGRFG + V
Sbjct: 313 RVLIASDVWARGIDVQTVSHVINYDIPNNPELYIHRIGRAGRFGREGV 360
Score = 50 (22.7 bits), Expect = 1.5e-07, Sum P(2) = 1.5e-07
Identities = 10/35 (28%), Positives = 20/35 (57%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
+G+AI F +D K L +++ + I E+P ++
Sbjct: 358 EGVAINFVKS-SDMKDLKDIERHYGTKIREMPADL 391
>FB|FBgn0004419 [details] [associations]
symbol:me31B "maternal expression at 31B" species:7227
"Drosophila melanogaster" [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS;NAS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IDA] [GO:0000932 "cytoplasmic
mRNA processing body" evidence=IDA] [GO:0033962 "cytoplasmic mRNA
processing body assembly" evidence=IMP] [GO:0005875 "microtubule
associated complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0007095 "mitotic G2 DNA damage checkpoint"
evidence=IGI] [GO:0043186 "P granule" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005875 GO:GO:0007095 EMBL:AE014134 GO:GO:0003723
GO:GO:0000932 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0033962 GO:GO:0004004 eggNOG:COG0513
GeneTree:ENSGT00530000063986 KO:K12614 OMA:YSHARMK
InterPro:IPR014014 PROSITE:PS51195 EMBL:M59926 EMBL:AY051663
PIR:A39157 RefSeq:NP_523533.2 RefSeq:NP_723539.1 UniGene:Dm.2770
ProteinModelPortal:P23128 SMR:P23128 IntAct:P23128 MINT:MINT-769276
STRING:P23128 PaxDb:P23128 PRIDE:P23128 EnsemblMetazoa:FBtr0079975
GeneID:34364 KEGG:dme:Dmel_CG4916 CTD:34364 FlyBase:FBgn0004419
InParanoid:P23128 OrthoDB:EOG45QFVG PhylomeDB:P23128 ChiTaRS:me31B
GenomeRNAi:34364 NextBio:788139 Bgee:P23128 GermOnline:CG4916
Uniprot:P23128
Length = 459
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 84/262 (32%), Positives = 135/262 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D+L +AK+G GKT + + L+Q++ T + LVM TRELA Q S+ +K
Sbjct: 92 ALSGKDVLARAKNGTGKTGAYCIPVLEQIDPTKDYIQALVMVPTRELALQTSQICIELAK 151
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ +I+V V GG I KD+ Q+++ TPGRIL L+ K ++S + +LDE
Sbjct: 152 HL-DIRVMVTTGGT-ILKDDILRIYQKVQLIIATPGRILDLMDKKVADMSHCRILVLDEA 209
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L L+ + + + P Q+++FSAT ++ +K + +P E+ + +E LT
Sbjct: 210 DKLLS-LDFQGMLDHVILKLPKDPQILLFSATFPLTVKNFMEKHLREPYEINLMEE--LT 266
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ ++E + IH
Sbjct: 267 LKGVTQYYAFVQERQKVHCLNTLFSKLQINQSIIFCNSTQRVELLAKKITELGYCCYYIH 326
Query: 386 RGMTQEERLKKYQEFKDFHKGL 407
M Q R + F DF +GL
Sbjct: 327 AKMAQAHRNRV---FHDFRQGL 345
Score = 142 (55.0 bits), Expect = 1.1e-06, P = 1.1e-06
Identities = 24/44 (54%), Positives = 35/44 (79%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
R LV ++LF RG+D++ VN+V N+D P ++TYLHR+ R+GRFG
Sbjct: 347 RNLVCSDLFTRGIDVQAVNVVINFDFPRMAETYLHRIGRSGRFG 390
>UNIPROTKB|Q29S22 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9913 "Bos taurus" [GO:0005730 "nucleolus" evidence=ISS]
[GO:0008380 "RNA splicing" evidence=ISS] [GO:0006915 "apoptotic
process" evidence=ISS] [GO:0006364 "rRNA processing" evidence=ISS]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 EMBL:BC113207
IPI:IPI00688068 RefSeq:NP_001039850.1 UniGene:Bt.23258
ProteinModelPortal:Q29S22 SMR:Q29S22 PRIDE:Q29S22
Ensembl:ENSBTAT00000003058 GeneID:534721 KEGG:bta:534721 CTD:51202
HOVERGEN:HBG100512 InParanoid:Q29S22 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4TXBRS NextBio:20876515 Uniprot:Q29S22
Length = 457
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 81/270 (30%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 60 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 119
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P IV+ TPGR++ + N K NL LK+ ++DE
Sbjct: 120 SIG-VQCAVIVGGIDSMSQSLAL-AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDE 177
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 178 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 235
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 236 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 295
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 296 HGQMSQSKRLGSLNKFKA--KARSILLATD 323
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 318 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 366
>UNIPROTKB|Q9H0S4 [details] [associations]
symbol:DDX47 "Probable ATP-dependent RNA helicase DDX47"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0006915 "apoptotic process" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=IMP] [GO:0006364 "rRNA
processing" evidence=IMP] [GO:0005730 "nucleolus" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0006915 GO:GO:0005730
GO:GO:0008380 GO:GO:0006397 GO:GO:0003676 GO:GO:0003723
EMBL:CH471094 UniGene:Hs.719938 GermOnline:ENSG00000178878
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF EMBL:AF078843 EMBL:AL136666 EMBL:AK054574 EMBL:AK127712
EMBL:AC007215 EMBL:BC009379 EMBL:BC068009 IPI:IPI00023972
IPI:IPI00397372 RefSeq:NP_057439.2 RefSeq:NP_957518.1 PDB:3BER
PDBsum:3BER ProteinModelPortal:Q9H0S4 SMR:Q9H0S4 IntAct:Q9H0S4
MINT:MINT-3056694 STRING:Q9H0S4 PhosphoSite:Q9H0S4 DMDM:52782792
SWISS-2DPAGE:Q9H0S4 PaxDb:Q9H0S4 PRIDE:Q9H0S4 DNASU:51202
Ensembl:ENST00000352940 Ensembl:ENST00000358007 GeneID:51202
KEGG:hsa:51202 UCSC:uc001rav.3 GeneCards:GC12P012966
HGNC:HGNC:18682 HPA:HPA014855 neXtProt:NX_Q9H0S4
PharmGKB:PA134918403 InParanoid:Q9H0S4 PhylomeDB:Q9H0S4
ChiTaRS:DDX47 EvolutionaryTrace:Q9H0S4 GenomeRNAi:51202
NextBio:54238 ArrayExpress:Q9H0S4 Bgee:Q9H0S4 CleanEx:HS_DDX47
Genevestigator:Q9H0S4 Uniprot:Q9H0S4
Length = 455
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 80/270 (29%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 58 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P I++ TPGR++ + N K NL LK+ ++DE
Sbjct: 118 SIG-VQSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLIDHLENTKGFNLRALKYLVMDE 175
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 176 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 233
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 234 TVEKLQQYYIFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 293
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 294 HGQMSQSKRLGSLNKFKA--KARSILLATD 321
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 364
>MGI|MGI:1915005 [details] [associations]
symbol:Ddx47 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 47"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005730 "nucleolus"
evidence=ISO] [GO:0006364 "rRNA processing" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008380 "RNA splicing" evidence=ISO]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 MGI:MGI:1915005
GO:GO:0005524 GO:GO:0006915 GO:GO:0005730 GO:GO:0008380
GO:GO:0006397 GO:GO:0003723 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802
GeneTree:ENSGT00670000098028 CTD:51202 HOVERGEN:HBG100512 KO:K14777
OMA:IFIPSKF OrthoDB:EOG4TXBRS ChiTaRS:DDX47 EMBL:AK010310
EMBL:AK076982 IPI:IPI00187240 RefSeq:NP_080636.2 UniGene:Mm.166524
ProteinModelPortal:Q9CWX9 SMR:Q9CWX9 IntAct:Q9CWX9
PhosphoSite:Q9CWX9 PaxDb:Q9CWX9 PRIDE:Q9CWX9
Ensembl:ENSMUST00000032326 GeneID:67755 KEGG:mmu:67755
InParanoid:Q9CWX9 NextBio:325481 Bgee:Q9CWX9 CleanEx:MM_DDX47
Genevestigator:Q9CWX9 GermOnline:ENSMUSG00000030204 Uniprot:Q9CWX9
Length = 455
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 81/270 (30%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 58 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P IV+ TPGR++ + N K NL LK+ ++DE
Sbjct: 118 SIG-VQCAVIVGGIDSMSQSLAL-AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDE 175
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 176 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 233
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 234 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 293
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 294 HGQMSQSKRLGSLNKFKA--KARSILLATD 321
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 364
>UNIPROTKB|G3V727 [details] [associations]
symbol:Ddx47 "Protein Ddx47" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 EMBL:CH473964
GeneTree:ENSGT00670000098028 CTD:51202 KO:K14777 OMA:IFIPSKF
RefSeq:NP_001015005.2 UniGene:Rn.73790 Ensembl:ENSRNOT00000011096
GeneID:297685 KEGG:rno:297685 RGD:1310437 NextBio:642541
Uniprot:G3V727
Length = 455
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 81/270 (30%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 58 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 117
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P IV+ TPGR++ + N K NL LK+ ++DE
Sbjct: 118 SIG-VQCAVIVGGIDSMSQSLAL-AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDE 175
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 176 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 233
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 234 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 293
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 294 HGQMSQSKRLGSLNKFKA--KARSILLATD 321
Score = 118 (46.6 bits), Expect = 0.00050, P = 0.00050
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 316 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 364
>UNIPROTKB|I3L976 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008380 "RNA splicing" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0006364 "rRNA processing"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF Ensembl:ENSSSCT00000025539 Uniprot:I3L976
Length = 456
Score = 330 (121.2 bits), Expect = 7.9e-30, P = 7.9e-30
Identities = 81/270 (30%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 57 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 116
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P IV+ TPGR++ + N K NL LK+ ++DE
Sbjct: 117 SIG-VQCAVIVGGIDSMSQSLAL-AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDE 174
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 175 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 232
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 233 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 292
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 293 HGQMSQSKRLGSLNKFKA--KARSILLATD 320
>TIGR_CMR|CPS_1726 [details] [associations]
symbol:CPS_1726 "RNA helicase DeaD" species:167879
"Colwellia psychrerythraea 34H" [GO:0003724 "RNA helicase activity"
evidence=ISS] [GO:0009409 "response to cold" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 RefSeq:YP_268464.1 ProteinModelPortal:Q484Q1
STRING:Q484Q1 GeneID:3523325 KEGG:cps:CPS_1726 PATRIC:21466621
OMA:WIVKGVE ProtClustDB:CLSK741103
BioCyc:CPSY167879:GI48-1803-MONOMER Uniprot:Q484Q1
Length = 611
Score = 336 (123.3 bits), Expect = 8.5e-30, P = 8.5e-30
Identities = 76/253 (30%), Positives = 134/253 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L +A++G GKTA F L L +++T+ ++V+ TRELA Q+++ E F K M
Sbjct: 52 GKDVLGEAQTGTGKTAAFGLPALAKIDTSIKKPQLMVLAPTRELAMQVAEAIESFGKDMK 111
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++V +GG + L+ Q+VVGTPGR++ +R K L L L+ +LDE D+M
Sbjct: 112 GLRVATLYGGQSYGPQFQQLE-RGAQVVVGTPGRLMDHLRRKSLKLDELRVCVLDEADEM 170
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + D+Q I P T Q+ +FSAT+ IR + +F+ DP + V K +
Sbjct: 171 LN-MGFLEDIQWILDHIPKTAQMCLFSATMPPAIRKIANRFLKDPEHIKVAAVKKAKAN- 228
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q+ +V+E++ ++IFV++ + ++ L +PA++++ +
Sbjct: 229 ITQYAWKVSGITKMTALERIAEVVEYDAMIIFVRTRNDTVDIAEKLERAGYPALALNGDL 288
Query: 389 TQEERLKKYQEFK 401
Q +R + + K
Sbjct: 289 NQAQRERCIDQMK 301
Score = 140 (54.3 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/52 (50%), Positives = 38/52 (73%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
ILVAT++ RG+DI R+++V NYD+P D++ Y+HR+ R GR G + GM I
Sbjct: 307 ILVATDVVARGLDIPRISLVINYDLPGDNEAYVHRIGRTGRAGRE---GMSI 355
>TAIR|locus:2088237 [details] [associations]
symbol:EIF4A1 "eukaryotic translation initiation factor
4A1" species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003743 "translation initiation factor
activity" evidence=ISS] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0005737 "cytoplasm" evidence=ISM]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0006413 "translational initiation" evidence=ISS] [GO:0005515
"protein binding" evidence=IPI] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0046686
"response to cadmium ion" evidence=IEP;RCA] [GO:0016020 "membrane"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA] [GO:0009506
"plasmodesma" evidence=IDA] [GO:0048046 "apoplast" evidence=IDA]
[GO:0005794 "Golgi apparatus" evidence=RCA] [GO:0006094
"gluconeogenesis" evidence=RCA] [GO:0006096 "glycolysis"
evidence=RCA] [GO:0009651 "response to salt stress" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0009506 GO:GO:0005524
GO:GO:0005618 GO:GO:0046686 EMBL:CP002686 GO:GO:0005730
GO:GO:0016020 GO:GO:0048046 GO:GO:0006413 GO:GO:0003743
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K03257 OMA:SKRERIM
IPI:IPI00657454 RefSeq:NP_001030693.1 UniGene:At.23558
UniGene:At.28184 ProteinModelPortal:F4JEL4 SMR:F4JEL4 PRIDE:F4JEL4
EnsemblPlants:AT3G13920.2 GeneID:820605 KEGG:ath:AT3G13920
Uniprot:F4JEL4
Length = 415
Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
Identities = 85/263 (32%), Positives = 134/263 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QA+SG GKTA F LQQL+ + LV+ TRELA QI K Y+
Sbjct: 76 GLDVIQQAQSGTGKTATFCSGVLQQLDFSLIQCQALVLAPTRELAQQIEKVMRALGDYLG 135
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV GG +++D+ L+ +VVGTPGR+ +++ + L +K F+LDE D+M
Sbjct: 136 -VKVHACVGGTSVREDQRILQA-GVHVVVGTPGRVFDMLKRQSLRADNIKMFVLDEADEM 193
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L + + + +IF+ P QV +FSAT+ E + +KFM P+ + V + +LTL G
Sbjct: 194 LSR-GFKDQIYDIFQLLPPKIQVGVFSATMPPEALEITRKFMSKPVRILVKRD-ELTLEG 251
Query: 329 LQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q YV + L Q VIFV + + L+ + ++ + H
Sbjct: 252 IKQFYVNVEKEEWKLETLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGD 311
Query: 388 MTQEERLKKYQEFKDFHKGLAIT 410
M Q R +EF+ + IT
Sbjct: 312 MDQNTRDIIMREFRSGSSRVLIT 334
Score = 148 (57.2 bits), Expect = 2.0e-07, P = 2.0e-07
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V N+D+P + YLHR+ R+GRFG K V
Sbjct: 330 RVLITTDLLARGIDVQQVSLVINFDLPTQPENYLHRIGRSGRFGRKGV 377
>UNIPROTKB|E2RN03 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 GeneTree:ENSGT00670000098028
OMA:IFIPSKF EMBL:AAEX03015248 Ensembl:ENSCAFT00000020996
NextBio:20853120 Uniprot:E2RN03
Length = 482
Score = 329 (120.9 bits), Expect = 1.1e-29, P = 1.1e-29
Identities = 81/270 (30%), Positives = 139/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L L L T ++ LV+ TRELAFQIS+++E
Sbjct: 84 ALQGRDIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGS 143
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ L P IV+ TPGR++ + N K NL LK+ ++DE
Sbjct: 144 SIG-VQSAVIVGGIDSMSQSLAL-AKKPHIVIATPGRLIDHLENTKGFNLRALKYLVMDE 201
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 202 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKKVQKLQRAALKNPVKCAVSSKYQ- 259
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 260 TVEKLQQYYLFIPSKFKDTYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 319
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 320 HGQMSQSKRLGSLNKFKA--KARSILLATD 347
Score = 118 (46.6 bits), Expect = 0.00054, P = 0.00054
Identities = 26/50 (52%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 342 ILLATDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 390
>UNIPROTKB|P0A9P6 [details] [associations]
symbol:deaD "DeaD, DEAD-box RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0030684 "preribosome" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0000027 "ribosomal large
subunit assembly" evidence=IMP] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=IDA] [GO:0006401 "RNA catabolic
process" evidence=IGI] [GO:0003724 "RNA helicase activity"
evidence=IDA] [GO:0070417 "cellular response to cold"
evidence=IEP;IMP] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021046 Pfam:PF00270 Pfam:PF00271 Pfam:PF12343
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR EMBL:U18997 GO:GO:0003723 GO:GO:0006401
GO:GO:0070417 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580
Pfam:PF03880 EMBL:M63288 EMBL:U03750 PIR:F65106 RefSeq:NP_417631.2
RefSeq:YP_491349.1 ProteinModelPortal:P0A9P6 SMR:P0A9P6
DIP:DIP-35752N IntAct:P0A9P6 MINT:MINT-1219396 SWISS-2DPAGE:P0A9P6
PaxDb:P0A9P6 PRIDE:P0A9P6 EnsemblBacteria:EBESCT00000000679
EnsemblBacteria:EBESCT00000014242 GeneID:12933435 GeneID:947674
KEGG:ecj:Y75_p3084 KEGG:eco:b3162 PATRIC:32121742 EchoBASE:EB0211
EcoGene:EG10215 OMA:ILFMTPR ProtClustDB:PRK11634
BioCyc:EcoCyc:EG10215-MONOMER BioCyc:ECOL316407:JW5531-MONOMER
Genevestigator:P0A9P6 GO:GO:0030684 Uniprot:P0A9P6
Length = 629
Score = 332 (121.9 bits), Expect = 2.6e-29, P = 2.6e-29
Identities = 84/266 (31%), Positives = 132/266 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L A++G GKTA F L LQ L+ +LV+ TRELA Q+++ FSK+M
Sbjct: 43 GRDVLGMAQTGSGKTAAFSLPLLQNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG L+ PQIVVGTPGR+L ++ L+LS L +LDE D+M
Sbjct: 103 GVNVVALYGGQRYDVQLRALR-QGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L ++ DV+ I P Q +FSAT+ + IR + ++FM +P EV + T
Sbjct: 162 L-RMGFIEDVETIMAQIPEGHQTALFSATMPEAIRRITRRFMKEPQEVRIQSSVT-TRPD 219
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+ Q Y + +F+ +IFV++ + ++ L + + +++ M
Sbjct: 220 ISQSYWTVWGMRKNEALVRFLEAEDFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDM 279
Query: 389 TQEERLKKYQEFKDFHKGLAITFASD 414
Q R + + KD L I A+D
Sbjct: 280 NQALREQTLERLKDGR--LDILIATD 303
Score = 147 (56.8 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 29/74 (39%), Positives = 48/74 (64%)
Query: 71 KGAYVSIHSSGFRDFLLKPEILRAIVDC-WRILVATNLFGRGMDIERVNIVFNYDMPEDS 129
+ Y S +G + L+ + L + D IL+AT++ RG+D+ER+++V NYD+P DS
Sbjct: 267 RNGYNSAALNGDMNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDS 326
Query: 130 DTYLHRVARAGRFG 143
++Y+HR+ R GR G
Sbjct: 327 ESYVHRIGRTGRAG 340
Score = 37 (18.1 bits), Expect = 2.4e-06, Sum P(2) = 2.4e-06
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 190 RELAFQISKEYERFSKYMSNIKV 212
R + I+ E + S+Y+ NIK+
Sbjct: 502 RHIVGAIANEGDISSRYIGNIKL 524
>UNIPROTKB|Q5ZLB0 [details] [associations]
symbol:DDX47 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006915
GO:GO:0005730 GO:GO:0008380 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 CTD:51202
HOVERGEN:HBG100512 KO:K14777 OMA:IFIPSKF OrthoDB:EOG4TXBRS
EMBL:AADN02006011 EMBL:AADN02006010 EMBL:AJ719824 IPI:IPI00584081
RefSeq:NP_001007854.1 UniGene:Gga.13941 SMR:Q5ZLB0 STRING:Q5ZLB0
Ensembl:ENSGALT00000019245 GeneID:417959 KEGG:gga:417959
InParanoid:Q5ZLB0 NextBio:20821184 Uniprot:Q5ZLB0
Length = 453
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 80/270 (29%), Positives = 137/270 (50%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKT F L LQ L ++ LV+ TRELAFQIS+++E
Sbjct: 59 ALQGRDIIGLAETGSGKTGAFALPILQALLDAPQRLFALVLTPTRELAFQISEQFEALGS 118
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ + V GG+ L P I++ TPGR++ + N K NL LK ++DE
Sbjct: 119 SIG-VHSAVIVGGIDSMSQSLAL-AKKPHIIIATPGRLVDHLENTKGFNLRALKFLVMDE 176
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + +P++ V + +
Sbjct: 177 ADRILN-MDFETEVDKILKVIPRDRKTFLFSATMTKQVQKLQRAALKNPVKCAVSSKYQ- 234
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ+Y+ + L N +IF + + LL F A+ +
Sbjct: 235 TVEKLQQYYIFIPSKFKDSYLVYILNELAGNSFMIFCSTCNNTQRTALLLRNLGFTAIPL 294
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K +I A+D
Sbjct: 295 HGQMSQNKRLGSLNKFKA--KARSILLATD 322
Score = 116 (45.9 bits), Expect = 0.00082, P = 0.00082
Identities = 24/46 (52%), Positives = 33/46 (71%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFG 143
IL+AT++ RG+DI V++V N+D+P S Y+HRV ARAGR G
Sbjct: 317 ILLATDVASRGLDIPHVDVVINFDIPTHSKDYIHRVGRTARAGRSG 362
>UNIPROTKB|Q11039 [details] [associations]
symbol:deaD "Cold-shock DEAD box protein A homolog"
species:1773 "Mycobacterium tuberculosis" [GO:0005618 "cell wall"
evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 GO:GO:0005618
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842576 GO:GO:0006351 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 InterPro:IPR005580 Pfam:PF03880
PIR:E70752 RefSeq:NP_215769.1 RefSeq:NP_335736.1
RefSeq:YP_006514628.1 ProteinModelPortal:Q11039 SMR:Q11039
PRIDE:Q11039 EnsemblBacteria:EBMYCT00000002426
EnsemblBacteria:EBMYCT00000070115 GeneID:13319832 GeneID:887069
GeneID:924778 KEGG:mtc:MT1292 KEGG:mtu:Rv1253 KEGG:mtv:RVBD_1253
PATRIC:18124606 TubercuList:Rv1253 OMA:LPQGMPK
ProtClustDB:CLSK791051 Uniprot:Q11039
Length = 563
Score = 312 (114.9 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 77/255 (30%), Positives = 129/255 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ A++G GKTA F + L +++ T LV+ TRELA Q+++ + R+ Y+S
Sbjct: 50 GSDVVGLAQTGTGKTAAFAIPMLSKIDITSKVPQALVLVPTRELALQVAEAFGRYGAYLS 109
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ V +GG L+ Q+VVGTPGR++ + L+LS + +LDE D+M
Sbjct: 110 QLNVLPIYGGSSYAVQLAGLR-RGAQVVVGTPGRMIDHLERATLDLSRVDFLVLDEADEM 168
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL-H 327
L + DV+ I +P KQV +FSAT+ IR + K++HDP EV +AK +
Sbjct: 169 LT-MGFADDVERILSETPEYKQVALFSATMPPAIRKLSAKYLHDPFEVTC--KAKTAVAE 225
Query: 328 GLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
+ Q Y+ +V F +++FV++ ++ L + F A +I
Sbjct: 226 NISQSYIQVARKMDALTRVL--EVEPFEAMIVFVRTKQATEEIAEKLRARGFSAAAISGD 283
Query: 388 MTQEERLKKYQEFKD 402
+ Q +R + +D
Sbjct: 284 VPQAQRERTITALRD 298
Score = 139 (54.0 bits), Expect = 6.6e-06, Sum P(2) = 6.6e-06
Identities = 23/43 (53%), Positives = 35/43 (81%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
ILVAT++ RG+D+ER++ V NYD+P D+++Y+HR+ R GR G
Sbjct: 303 ILVATDVAARGLDVERISHVLNYDIPHDTESYVHRIGRTGRAG 345
Score = 40 (19.1 bits), Expect = 2.7e-29, Sum P(2) = 2.7e-29
Identities = 8/16 (50%), Positives = 10/16 (62%)
Query: 82 FRDFLLKPEILRAIVD 97
F D + P +LRAI D
Sbjct: 15 FADLQIHPRVLRAIGD 30
>UNIPROTKB|K7EIL8 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821
EMBL:AC008569 Ensembl:ENST00000586993 Uniprot:K7EIL8
Length = 125
Score = 201 (75.8 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 39/49 (79%), Positives = 44/49 (89%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELA 193
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V VLVMCHTRELA
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQVTVLVMCHTRELA 125
Score = 150 (57.9 bits), Expect = 3.0e-29, Sum P(2) = 3.0e-29
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
>UNIPROTKB|P21693 [details] [associations]
symbol:dbpA species:83333 "Escherichia coli K-12"
[GO:0003724 "RNA helicase activity" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] [GO:0033677 "DNA/RNA helicase
activity" evidence=IDA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0006200 "ATP catabolic process" evidence=IDA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
[GO:0034459 "ATP-dependent 3'-5' RNA helicase activity"
evidence=IDA] [GO:0019843 "rRNA binding" evidence=IDA] [GO:0043531
"ADP binding" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0043531
GO:GO:0019843 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:X52647 PIR:B64884 RefSeq:NP_415859.1 RefSeq:YP_489613.1
ProteinModelPortal:P21693 SMR:P21693 IntAct:P21693 PRIDE:P21693
EnsemblBacteria:EBESCT00000004879 EnsemblBacteria:EBESCT00000014318
GeneID:12933991 GeneID:947153 KEGG:ecj:Y75_p1320 KEGG:eco:b1343
PATRIC:32117966 EchoBASE:EB0206 EcoGene:EG10210
HOGENOM:HOG000268809 KO:K05591 OMA:HIDPARF ProtClustDB:PRK11776
BioCyc:EcoCyc:EG10210-MONOMER BioCyc:ECOL316407:JW1337-MONOMER
BioCyc:MetaCyc:EG10210-MONOMER Genevestigator:P21693 GO:GO:0034459
GO:GO:0033677 InterPro:IPR005580 Pfam:PF03880 Uniprot:P21693
Length = 457
Score = 324 (119.1 bits), Expect = 3.4e-29, P = 3.4e-29
Identities = 74/249 (29%), Positives = 129/249 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D+ QAK+G GKTA F L LQQ++ + LV+C TRELA Q++ E R +
Sbjct: 36 AILAGKDVRVQAKTGSGKTAAFGLGLLQQIDASLFQTQALVLCPTRELADQVAGELRRLA 95
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+++ N K+ GG P + L+ H P I+V TPGR+L ++ ++L L ++DE
Sbjct: 96 RFLPNTKILTLCGGQPFGMQRDSLQ-HAPHIIVATPGRLLDHLQKGTVSLDALNTLVMDE 154
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML+ + + ++ R +P ++Q ++FSAT + I + + DP+ + +D L
Sbjct: 155 ADRMLD-MGFSDAIDDVIRFAPASRQTLLFSATWPEAIAAISGRVQRDPLAIEIDSTDAL 213
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
++Q + + + + V+F + C A+ L+E A+S+
Sbjct: 214 P--PIEQQFYETSSKGKIPLLQRLLSLHQPSSCVVFCNTKKDCQAVCDALNEVGQSALSL 271
Query: 385 HRGMTQEER 393
H + Q +R
Sbjct: 272 HGDLEQRDR 280
>UNIPROTKB|J3KTB5 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000584860
Uniprot:J3KTB5
Length = 257
Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
Identities = 69/188 (36%), Positives = 107/188 (56%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K Y
Sbjct: 51 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDY 110
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 111 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 169
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 170 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 227
Query: 327 HGLQQHYV 334
G++Q Y+
Sbjct: 228 EGIRQFYI 235
>UNIPROTKB|Q8ECL2 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 81/277 (29%), Positives = 143/277 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQL---ETTDSNVYV---LVMCHTRELAFQISK 198
AVL G D+L A +G GKTA F L LQ+L ++ D + V LV+ TRELA Q++
Sbjct: 42 AVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVAD 101
Query: 199 EYERFSKYMSN-IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
+ ++ + + +K+ FGG+ + + L+ ++V TPGR+L L+ + L L+ +
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRA-GADVLVATPGRLLDLLASNALKLTQV 160
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
F+LDE D+ML L +++++ + P KQ ++FSAT +E+R + K +H P+E +
Sbjct: 161 SAFVLDEADRMLS-LGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYH 219
Query: 318 VDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+ E + T+ +Q + +++Q +IFV + C L+ LS++
Sbjct: 220 LQSEQESTI---EQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKR 276
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
A H Q R + FK+ +++ A+D
Sbjct: 277 GISAEVFHGDKAQGARTRVLDGFKNGE--ISVLIATD 311
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 20/53 (37%), Positives = 38/53 (71%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
+L+AT++ RG+DI+++ +V N+D+P Y+HR+ R+GR G +A L + ++
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAG-EAGLAVTLI 357
>TIGR_CMR|SO_3125 [details] [associations]
symbol:SO_3125 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
ProtClustDB:CLSK907013 RefSeq:NP_718686.1 ProteinModelPortal:Q8ECL2
GeneID:1170814 KEGG:son:SO_3125 PATRIC:23525896 OMA:AHLIKQH
Uniprot:Q8ECL2
Length = 427
Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
Identities = 81/277 (29%), Positives = 143/277 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQL---ETTDSNVYV---LVMCHTRELAFQISK 198
AVL G D+L A +G GKTA F L LQ+L ++ D + V LV+ TRELA Q++
Sbjct: 42 AVLSGRDVLAGANTGSGKTAAFALPLLQRLSEAKSADKSAGVVRCLVLVPTRELAQQVAD 101
Query: 199 EYERFSKYMSN-IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLL 257
+ ++ + + +K+ FGG+ + + L+ ++V TPGR+L L+ + L L+ +
Sbjct: 102 SFLSYASHFNGQLKIVAAFGGVSVNLQMQSLRA-GADVLVATPGRLLDLLASNALKLTQV 160
Query: 258 KHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVY 317
F+LDE D+ML L +++++ + P KQ ++FSAT +E+R + K +H P+E +
Sbjct: 161 SAFVLDEADRMLS-LGFTEELEQVLAALPRQKQTLLFSATFPEEVRALTTKLLHQPLEYH 219
Query: 318 VDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+ E + T+ +Q + +++Q +IFV + C L+ LS++
Sbjct: 220 LQSEQESTI---EQRVITVNREQKTALLAHLIKQHQWSQALIFVSAKNTCNHLAQKLSKR 276
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
A H Q R + FK+ +++ A+D
Sbjct: 277 GISAEVFHGDKAQGARTRVLDGFKNGE--ISVLIATD 311
Score = 119 (46.9 bits), Expect = 0.00035, P = 0.00035
Identities = 20/53 (37%), Positives = 38/53 (71%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDIL 153
+L+AT++ RG+DI+++ +V N+D+P Y+HR+ R+GR G +A L + ++
Sbjct: 306 VLIATDIAARGIDIDKLPVVINFDLPRSPADYMHRIGRSGRAG-EAGLAVTLI 357
>UNIPROTKB|F1P5C0 [details] [associations]
symbol:DDX20 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006917
"induction of apoptosis" evidence=IEA] [GO:0017053 "transcriptional
repressor complex" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0017053 GO:GO:0006917 GO:GO:0003676
GO:GO:0000122 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 OMA:VEDYEHY
GeneTree:ENSGT00530000062880 EMBL:AADN02044991 IPI:IPI00582962
Ensembl:ENSGALT00000040229 Uniprot:F1P5C0
Length = 753
Score = 314 (115.6 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 94/296 (31%), Positives = 143/296 (48%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+D++ QAKSG GKT VF L L VL++ TRE+A QI M
Sbjct: 42 GLDLIVQAKSGTGKTCVFSTIALDALLLDSPATQVLILAPTREIAVQIHAVITTIGIKME 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTP--GRILALVRNKKLNLSLLKHFILDECD 266
++ VF GG P+ +D+ LK + I VG+P GRI L+ LN + ++ FILDE D
Sbjct: 102 GLECHVFIGGTPLSQDKVRLKKCH--IAVGSPDVGRIKQLIELDYLNTASIRLFILDEAD 159
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
K+LE+ + + I+ S P KQ++ SAT + + +M +P V ++ +L
Sbjct: 160 KLLEEGSFQEQINWIYSSLPANKQMLAVSATYPESLANALTMYMREPTFVRLNPTDP-SL 218
Query: 327 HGLQQHY--VXXXXXXXXXXXXXXXDVLE------FNQVVIFVKSVTRCIALSTLLSEQN 378
GL+Q+Y V + E FNQ ++F +R L+ +L+ +
Sbjct: 219 IGLKQYYKIVNSHPLPHKTFEEKTQHLQELFSKIPFNQALVFSNLHSRAQHLAEILTSRG 278
Query: 379 FPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT--FASDENDAKILNNVQDRFDVSI 432
FPA I M Q +RL + K FH + I+ S DA+ +N V + DV +
Sbjct: 279 FPAECISGSMNQSQRLDAMAKLKQFHCRVLISTDLTSRGIDAEKVNLVIN-LDVPV 333
Score = 155 (59.6 bits), Expect = 4.1e-07, Sum P(2) = 4.1e-07
Identities = 28/53 (52%), Positives = 41/53 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDI 152
R+L++T+L RG+D E+VN+V N D+P D +TY+HR+ RAGRFGT LG+ +
Sbjct: 306 RVLISTDLTSRGIDAEKVNLVINLDVPVDWETYMHRIGRAGRFGT---LGLSV 355
Score = 38 (18.4 bits), Expect = 1.5e-28, Sum P(2) = 1.5e-28
Identities = 6/34 (17%), Positives = 18/34 (52%)
Query: 406 GLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
GL++T+ + ++ + + ++ + LP+ I
Sbjct: 352 GLSVTYCCRGEEENMMMKIAQKCNLQLLPLPEPI 385
>ZFIN|ZDB-GENE-050522-359 [details] [associations]
symbol:zgc:112350 "zgc:112350" species:7955 "Danio
rerio" [GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
ZFIN:ZDB-GENE-050522-359 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOVERGEN:HBG100512 KO:K14777
EMBL:BC095776 IPI:IPI00488135 RefSeq:NP_001018522.1
UniGene:Dr.84733 ProteinModelPortal:Q502B4 SMR:Q502B4 GeneID:553715
KEGG:dre:553715 NextBio:20880445 Uniprot:Q502B4
Length = 512
Score = 321 (118.1 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 75/270 (27%), Positives = 138/270 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ A++G GKT F + LQ L ++ LV+ TRELAFQI+++++
Sbjct: 113 ALQGRDVIGLAETGSGKTGAFAVPVLQSLLACAQRLHTLVLTPTRELAFQIAEQFDALGS 172
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ +K V GG+ + L P +V+ TPGR++ + N K NL LK+ ++DE
Sbjct: 173 SIG-VKTAVIVGGIDMMSQALVL-AKKPHVVIATPGRLIDHMENTKGFNLRALKYLVMDE 230
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ +V +I + P ++ +FSAT++K+++ + + + DP++ V +
Sbjct: 231 ADRILN-MDFESEVDKILKVIPRDRRTFLFSATMTKKVQKLQRAALQDPVKCSVSSKYA- 288
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ Y+ + L N ++F + ++ LL A+ +
Sbjct: 289 TVDKLQQFYIFIPSKYKDCYLVSILNELAGNSFMVFCGTCNNTQRVALLLRNLGITAIPL 348
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASD 414
H M+Q +RL +FK K ++ A+D
Sbjct: 349 HGQMSQNKRLGALNKFKS--KSRSVLLATD 376
>UNIPROTKB|P96614 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=IDA] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IDA] [GO:0009409
"response to cold" evidence=IGI] [GO:0010501 "RNA secondary
structure unwinding" evidence=IDA] [GO:0043590 "bacterial nucleoid"
evidence=IDA] [GO:0005840 "ribosome" evidence=IDA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0009409
GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 HSSP:Q58083 ProtClustDB:CLSK886742
EMBL:AB001488 PIR:D69772 RefSeq:NP_388339.1
ProteinModelPortal:P96614 SMR:P96614 IntAct:P96614 DNASU:938170
EnsemblBacteria:EBBACT00000000739 GeneID:938170 KEGG:bsu:BSU04580
PATRIC:18972500 GenoList:BSU04580 BioCyc:BSUB:BSU04580-MONOMER
GO:GO:0010501 Uniprot:P96614
Length = 494
Score = 320 (117.7 bits), Expect = 1.6e-28, P = 1.6e-28
Identities = 73/252 (28%), Positives = 134/252 (53%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ QA++G GKTA F + ++++ N+ +V+ TRELA Q+S+E + +
Sbjct: 42 DVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRA 100
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
KV +GG I + LK NP I+VGTPGR+L + + + L+ + ++DE D+ML
Sbjct: 101 KVLPIYGGQDIGRQIRALKK-NPNIIVGTPGRLLDHINRRTIRLNNVNTVVMDEADEMLN 159
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ D++ I + P Q ++FSAT+ I+ + ++FM +P V V + ++T+ +Q
Sbjct: 160 -MGFIDDIESILSNVPSEHQTLLFSATMPAPIKRIAERFMTEPEHVKVKAK-EMTVSNIQ 217
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q Y+ D+ ++F ++ R L+ L+ + + A IH +TQ
Sbjct: 218 QFYLEVQERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELAEALNLRGYAAEGIHGDLTQ 277
Query: 391 EERLKKYQEFKD 402
+R+ ++FK+
Sbjct: 278 AKRMVALRKFKE 289
Score = 130 (50.8 bits), Expect = 2.7e-05, P = 2.7e-05
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K + M + + M
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAG-KTGMAMTFITPREKSM 352
>DICTYBASE|DDB_G0280147 [details] [associations]
symbol:ddx47 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280147 GO:GO:0005524
GO:GO:0005730 GenomeReviews:CM000152_GR GO:GO:0003723
EMBL:AAFI02000035 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q5STU4 KO:K14777 OMA:IFIPSKF
RefSeq:XP_641271.1 ProteinModelPortal:Q54VT4 SMR:Q54VT4
EnsemblProtists:DDB0234204 GeneID:8622403 KEGG:ddi:DDB_G0280147
Uniprot:Q54VT4
Length = 546
Score = 299 (110.3 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 75/265 (28%), Positives = 130/265 (49%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DI+ A++G GKTA FV+ LQ+L ++ L + TRELA+QI+ ++
Sbjct: 153 ALKGRDIIGLAQTGSGKTAAFVIPVLQKLLEAPQGLFCLALAPTRELAYQIADQFNAIGS 212
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA-LVRNKKLNLSLLKHFILDE 264
+ +K V GG+ L P +VVG+PGR+L L K NL +K+FI+DE
Sbjct: 213 TIG-VKTCVLVGGIDSMSQSLAL-AKKPHVVVGSPGRVLHHLEHTKGFNLRSIKYFIMDE 270
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++ + +V I + P + +FSAT++ ++ + + + +P++V V + +
Sbjct: 271 ADRLFSA-DFEEEVNNILKVIPKERNTYLFSATMTSKVAKLQRASLVNPVKVQVASKYQ- 328
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ L Q Y+ + L N +IF + ++ +L F A+ I
Sbjct: 329 TVDTLLQQYLFVPFKYKDCYLAYILNELAGNLTIIFTSTCASSTKIAMMLRNLGFGAIPI 388
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
+ M Q +RL +FK K + +
Sbjct: 389 NGDMDQGKRLASLNKFKQGTKSILV 413
Score = 129 (50.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 42/134 (31%), Positives = 62/134 (46%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
ILVAT++ RG+DI V++V NYD+P +S Y+HRV R R G + I+ Q M
Sbjct: 411 ILVATDVAARGLDIPSVDLVINYDVPTNSKEYVHRVGRTARAGNSG-RAITIVTQYDVEM 469
Query: 161 GKTAVFVLAT-LQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNIK--VGVFFG 217
+ FVL L + V L+ + A +I+ + Y S+ G G
Sbjct: 470 YQRIEFVLKKKLDSFPCQEETV--LIFLERVQEAHRIATNELKDKNYSSSSDRHSGDSEG 527
Query: 218 GLPIQKDEEYLKTH 231
+ I K + K H
Sbjct: 528 SIDINKRKVIKKVH 541
Score = 45 (20.9 bits), Expect = 1.9e-28, Sum P(2) = 1.9e-28
Identities = 13/43 (30%), Positives = 19/43 (44%)
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDR 427
HR T E + K Y D H G + + D N K++ V +
Sbjct: 502 HRIATNELKDKNYSSSSDRHSGDS-EGSIDINKRKVIKKVHKK 543
>UNIPROTKB|Q65N62 [details] [associations]
symbol:cshA "DEAD-box ATP-dependent RNA helicase CshA"
species:279010 "Bacillus licheniformis DSM 13 = ATCC 14580"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0043590 "bacterial nucleoid" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
HOGENOM:HOG000268810 OMA:IIDHINR HSSP:Q58083 EMBL:AE017333
EMBL:CP000002 RefSeq:YP_006711973.1 RefSeq:YP_077785.1
ProteinModelPortal:Q65N62 STRING:Q65N62 DNASU:3098967
EnsemblBacteria:EBBACT00000055567 EnsemblBacteria:EBBACT00000059427
GeneID:3030407 GeneID:3098967 GenomeReviews:AE017333_GR
GenomeReviews:CP000002_GR KEGG:bld:BLi00546 KEGG:bli:BL02197
PATRIC:18946609 ProtClustDB:CLSK886742
BioCyc:BLIC279010:GJ2P-538-MONOMER Uniprot:Q65N62
Length = 487
Score = 318 (117.0 bits), Expect = 2.4e-28, P = 2.4e-28
Identities = 73/251 (29%), Positives = 132/251 (52%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ QA++G GKTA F + ++++ N+ +V+ TRELA Q+S+E + +
Sbjct: 42 DVIGQAQTGTGKTAAFGIPLVEKINPESPNIQAIVIAPTRELAIQVSEELYKIGQD-KRA 100
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKMLE 270
+V +GG I + LK NP I+VGTPGR+L + + + L + +LDE D+ML
Sbjct: 101 RVLPIYGGQDIGRQIRALKK-NPHIIVGTPGRLLDHINRRTMRLQTVNTVVLDEADEMLN 159
Query: 271 QLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ D++ I + P Q ++FSAT+ I+ + ++FM +P V V + ++T+ +Q
Sbjct: 160 -MGFIEDIESILSNVPAEHQTLLFSATMPAPIKRIAERFMTNPEHVKVKAK-EMTVSNIQ 217
Query: 331 QHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQ 390
Q Y+ D+ ++F ++ R L+ L+ + + A IH +TQ
Sbjct: 218 QFYLEVHERKKFDTLTRLLDIQSPELAIVFGRTKRRVDELTEALNLRGYTAEGIHGDLTQ 277
Query: 391 EERLKKYQEFK 401
+R+ ++FK
Sbjct: 278 AKRMVALRKFK 288
Score = 129 (50.5 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+LVAT++ RG+DI V V+N+D+P+D ++Y+HR+ R GR G K + M + + M
Sbjct: 294 VLVATDVAARGLDISGVTHVYNFDVPQDPESYVHRIGRTGRAG-KTGMAMTFITPREKDM 352
>WB|WBGene00012059 [details] [associations]
symbol:T26G10.1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0040010 "positive regulation of
growth rate" evidence=IMP] [GO:0010171 "body morphogenesis"
evidence=IMP] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0009792 GO:GO:0040007 GO:GO:0040010 GO:GO:0006915
GO:GO:0002119 GO:GO:0010171 GO:GO:0003723 GO:GO:0040035
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 GeneTree:ENSGT00670000098028 KO:K14777
OMA:IFIPSKF EMBL:Z29115 PIR:S40731 RefSeq:NP_499069.1
ProteinModelPortal:P34580 SMR:P34580 STRING:P34580 PaxDb:P34580
EnsemblMetazoa:T26G10.1 GeneID:176321 KEGG:cel:CELE_T26G10.1
UCSC:T26G10.1 CTD:176321 WormBase:T26G10.1 InParanoid:P34580
NextBio:892086 Uniprot:P34580
Length = 489
Score = 316 (116.3 bits), Expect = 4.3e-28, P = 4.3e-28
Identities = 76/257 (29%), Positives = 129/257 (50%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ A++G GKT F + LQ L + LV+ TRELAFQI +++E
Sbjct: 78 ALQGKDVIGLAETGSGKTGAFAIPVLQSLLDHPQAFFCLVLTPTRELAFQIGQQFEALGS 137
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ I V GG+ + L P I+V TPGR++ + N K NL LK I+DE
Sbjct: 138 GIGLI-AAVIVGGVDMAAQAMAL-ARRPHIIVATPGRLVDHLENTKGFNLKALKFLIMDE 195
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ ++ +I + P ++ +FSAT++K++ + + + DP V V K
Sbjct: 196 ADRILN-MDFEVELDKILKVIPRERRTYLFSATMTKKVSKLERASLRDPARVSVSSRYK- 253
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ L+QHY+ + N ++F + + ++ +L + AV +
Sbjct: 254 TVDNLKQHYIFVPNKYKETYLVYLLNEHAGNSAIVFCATCATTMQIAVMLRQLGMQAVPL 313
Query: 385 HRGMTQEERLKKYQEFK 401
H M+QE+RL +FK
Sbjct: 314 HGQMSQEKRLGSLNKFK 330
Score = 125 (49.1 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 30/86 (34%), Positives = 45/86 (52%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAK-SG 159
ILV T++ RG+DI V++V NYDMP S Y+HRV R R G + + ++ Q
Sbjct: 336 ILVCTDVAARGLDIPHVDMVINYDMPSQSKDYVHRVGRTARAGRSGI-AITVVTQYDVEA 394
Query: 160 MGKTAVFVLATLQQLETTDSNVYVLV 185
K + L + + ++ V VLV
Sbjct: 395 YQKIEANLGKKLDEYKCVENEVMVLV 420
>WB|WBGene00000479 [details] [associations]
symbol:cgh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0009792 "embryo development ending in birth or
egg hatching" evidence=IMP] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0008340 "determination of adult
lifespan" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0006915 "apoptotic process"
evidence=IMP] [GO:0051729 "germline cell cycle switching, mitotic
to meiotic cell cycle" evidence=IMP] [GO:0008219 "cell death"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] [GO:0010467 "gene expression" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0043066 "negative
regulation of apoptotic process" evidence=IMP] [GO:0016071 "mRNA
metabolic process" evidence=TAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0043186 "P granule" evidence=IDA] [GO:0000932
"cytoplasmic mRNA processing body" evidence=IDA] [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0017148 "negative regulation of translation"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 78/256 (30%), Positives = 127/256 (49%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKT + + +++++ + +V+ TRELA Q S+ SK
Sbjct: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ +KV V GG ++ D L +V+ TPGRIL L+ + K +LDE
Sbjct: 137 HIQ-LKVMVTTGGTDLRDDIMRLNG-TVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEA 194
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + + + P +QVM++SAT + +K MH P E+ + +E LT
Sbjct: 195 DKLLSQ-DFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEE--LT 251
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ ++E + IH
Sbjct: 252 LLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIH 311
Query: 386 RGMTQEERLKKYQEFK 401
M Q R + + +F+
Sbjct: 312 SKMAQNHRNRVFHDFR 327
Score = 143 (55.4 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
+C R LV ++L RG+DI+ VN+V N+D P +++TYLHR+ R+GRFG V I +
Sbjct: 330 NC-RNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYED 388
Query: 157 KSGMGKTAVFVLATLQQL-ETTDSNVYV 183
+ + + + ++ + +T D +YV
Sbjct: 389 RHTLRRIEQELRTRIEPIPKTVDPKLYV 416
>UNIPROTKB|Q95YF3 [details] [associations]
symbol:cgh-1 "ATP-dependent RNA helicase cgh-1"
species:6239 "Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0008340
GO:GO:0009792 GO:GO:0002009 GO:GO:0006898 GO:GO:0040007
GO:GO:0006915 GO:GO:0010467 GO:GO:0016071 GO:GO:0043066
GO:GO:0030154 GO:GO:0007052 GO:GO:0002119 GO:GO:0017148
GO:GO:0048477 GO:GO:0007283 GO:GO:0051729 GO:GO:0003723
GO:GO:0040035 GO:GO:0000932 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026 EMBL:FO080423
RefSeq:NP_498646.1 ProteinModelPortal:Q95YF3 SMR:Q95YF3
DIP:DIP-25457N IntAct:Q95YF3 MINT:MINT-250782 STRING:Q95YF3
PaxDb:Q95YF3 EnsemblMetazoa:C07H6.5.1 EnsemblMetazoa:C07H6.5.2
GeneID:176061 KEGG:cel:CELE_C07H6.5 UCSC:C07H6.5.1 CTD:176061
WormBase:C07H6.5 eggNOG:COG0513 GeneTree:ENSGT00530000063986
HOGENOM:HOG000268797 InParanoid:Q95YF3 KO:K12614 OMA:YSHARMK
NextBio:890944 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
Uniprot:Q95YF3
Length = 430
Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
Identities = 78/256 (30%), Positives = 127/256 (49%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G DIL +AK+G GKT + + +++++ + +V+ TRELA Q S+ SK
Sbjct: 77 ALTGQDILARAKNGTGKTGAYCIPVIEKIQPALKAIQAMVIVPTRELALQTSQICVELSK 136
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
++ +KV V GG ++ D L +V+ TPGRIL L+ + K +LDE
Sbjct: 137 HIQ-LKVMVTTGGTDLRDDIMRLNG-TVHLVIATPGRILDLMEKGVAKMEHCKTLVLDEA 194
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
DK+L Q + + + + P +QVM++SAT + +K MH P E+ + +E LT
Sbjct: 195 DKLLSQ-DFQGILDRLINFLPKERQVMLYSATFPNTVTSFMQKHMHKPYEINLMEE--LT 251
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIH 385
L G+ Q+Y L+ NQ +IF S R L+ ++E + IH
Sbjct: 252 LLGVTQYYAFVQEKQKVHCLNTLFRKLQINQSIIFCNSTQRVELLAKKITEIGYSCYYIH 311
Query: 386 RGMTQEERLKKYQEFK 401
M Q R + + +F+
Sbjct: 312 SKMAQNHRNRVFHDFR 327
Score = 143 (55.4 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 31/88 (35%), Positives = 53/88 (60%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQA 156
+C R LV ++L RG+DI+ VN+V N+D P +++TYLHR+ R+GRFG V I +
Sbjct: 330 NC-RNLVCSDLLTRGIDIQAVNVVINFDFPRNAETYLHRIGRSGRFGHLGVAINLITYED 388
Query: 157 KSGMGKTAVFVLATLQQL-ETTDSNVYV 183
+ + + + ++ + +T D +YV
Sbjct: 389 RHTLRRIEQELRTRIEPIPKTVDPKLYV 416
>UNIPROTKB|Q8EIE5 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 312 (114.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 82/274 (29%), Positives = 142/274 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D++ Q K+G GKTA F L L +L+ + LV+C TRELA Q+++E +
Sbjct: 34 AILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLA 93
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ + N+KV GG+P+ L+ H I+VGTPGRI+ + +L+LS L +LDE
Sbjct: 94 RGIHNVKVLTLCGGVPMGPQIGSLE-HGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDE 152
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+MLE + + + I SP +Q ++FSAT ++I+ + K+ M++P+ V +A +
Sbjct: 153 ADRMLE-MGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMV----KAAV 207
Query: 325 T--LHGLQQHYVXXXXXXXXXXXXXXXDVLEFN--QVVIFVKSVTRCIALSTLLSEQNFP 380
T + ++QH+ +LE V+F + ++ L F
Sbjct: 208 THEKNTIEQHFYQLDDDKSRMQALQLL-LLEHKPESAVVFCNTKRETQKVADELEGLGFS 266
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+++H + Q +R + +F + K + A+D
Sbjct: 267 VLALHGDLEQRDRDETLLQFAN--KSACVLVATD 298
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 20/45 (44%), Positives = 34/45 (75%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
+LVAT++ RG+DI+ ++ VFNY + D++ ++HR+ R GR G+K
Sbjct: 293 VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK 337
>TIGR_CMR|SO_0897 [details] [associations]
symbol:SO_0897 "ATP-dependent RNA helicase DbpA"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591
OMA:HIDPARF ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
HSSP:P10081 RefSeq:NP_716527.1 ProteinModelPortal:Q8EIE5
GeneID:1168744 KEGG:son:SO_0897 PATRIC:23521451 Uniprot:Q8EIE5
Length = 458
Score = 312 (114.9 bits), Expect = 6.7e-28, P = 6.7e-28
Identities = 82/274 (29%), Positives = 142/274 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D++ Q K+G GKTA F L L +L+ + LV+C TRELA Q+++E +
Sbjct: 34 AILAGEDVIGQGKTGSGKTAAFGLGLLNKLDVKRFRIQTLVLCPTRELADQVAQEIRTLA 93
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ + N+KV GG+P+ L+ H I+VGTPGRI+ + +L+LS L +LDE
Sbjct: 94 RGIHNVKVLTLCGGVPMGPQIGSLE-HGAHIIVGTPGRIVDHLDRNRLDLSNLNMLVLDE 152
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+MLE + + + I SP +Q ++FSAT ++I+ + K+ M++P+ V +A +
Sbjct: 153 ADRMLE-MGFQPQLDAIIEQSPRERQTLLFSATFPEQIQSIAKQIMYNPVMV----KAAV 207
Query: 325 T--LHGLQQHYVXXXXXXXXXXXXXXXDVLEFN--QVVIFVKSVTRCIALSTLLSEQNFP 380
T + ++QH+ +LE V+F + ++ L F
Sbjct: 208 THEKNTIEQHFYQLDDDKSRMQALQLL-LLEHKPESAVVFCNTKRETQKVADELEGLGFS 266
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+++H + Q +R + +F + K + A+D
Sbjct: 267 VLALHGDLEQRDRDETLLQFAN--KSACVLVATD 298
Score = 120 (47.3 bits), Expect = 0.00030, P = 0.00030
Identities = 20/45 (44%), Positives = 34/45 (75%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
+LVAT++ RG+DI+ ++ VFNY + D++ ++HR+ R GR G+K
Sbjct: 293 VLVATDVAARGLDIDALDAVFNYHVAYDTEVHIHRIGRTGRAGSK 337
>UNIPROTKB|J3QS69 [details] [associations]
symbol:EIF4A1 "Eukaryotic initiation factor 4A-I"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR011545 Pfam:PF00270 PROSITE:PS00039
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC016876 HGNC:HGNC:3282 ChiTaRS:EIF4A1 Ensembl:ENST00000578495
Uniprot:J3QS69
Length = 300
Score = 311 (114.5 bits), Expect = 8.2e-28, P = 8.2e-28
Identities = 75/234 (32%), Positives = 121/234 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA Q K Y
Sbjct: 67 IKGYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQ--KVVMALGDY 124
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
M GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D
Sbjct: 125 MG-ASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEAD 183
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
+ML + + + +IF+ QV++ SAT+ ++ V KKFM DP+ + V E +LTL
Sbjct: 184 EMLSR-GFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILVKKE-ELTL 241
Query: 327 HGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
G++Q Y+ + L Q VIF+ + + L+ + ++F
Sbjct: 242 EGIRQFYINVEREEWKLDTLCDLYETLTITQAVIFINTRRKVDWLTEKMHARDF 295
>POMBASE|SPAC823.08c [details] [associations]
symbol:SPAC823.08c "ATP-dependent RNA helicase Rrp3
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005829 "cytosol" evidence=IDA] [GO:0006364 "rRNA
processing" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC823.08c GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
OrthoDB:EOG4ZPJ3P RefSeq:NP_593835.1 ProteinModelPortal:Q9P6N8
SMR:Q9P6N8 STRING:Q9P6N8 EnsemblFungi:SPAC823.08c.1 GeneID:2543571
KEGG:spo:SPAC823.08c NextBio:20804578 Uniprot:Q9P6N8
Length = 465
Score = 311 (114.5 bits), Expect = 1.1e-27, P = 1.1e-27
Identities = 73/252 (28%), Positives = 134/252 (53%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMSNI 210
D++ A++G GKTA F L +Q+L S + +V+ TRELA+QIS+++E + +
Sbjct: 85 DVIGLAQTGSGKTAAFALPVIQELWNNPSPFFAVVLAPTRELAYQISEQFEAIGGSIG-V 143
Query: 211 KVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDKML 269
+ V GG+ + L + P ++V TPGR++ + N K +L LK+ I+DE D++L
Sbjct: 144 RSVVIVGGMDMVTQAVAL-SKKPHVLVCTPGRLMDHLENTKGFSLKNLKYLIMDEADRLL 202
Query: 270 EQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGL 329
+ ++ + +I + PH ++ ++FSAT++ ++ + + +H P+ V V + T+ L
Sbjct: 203 D-MDFGPIIDKILKIIPHERRTLLFSATMTSKVEKLQRASLHQPVRVAVSSKFS-TVDTL 260
Query: 330 QQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMT 389
Q Y+ + L N ++IF ++V L+ LL F A+ +H ++
Sbjct: 261 IQRYLFFPFKHKDTYLVYLVNELAGNSIIIFARTVNDTQRLAILLRTLGFSAIPLHGQLS 320
Query: 390 QEERLKKYQEFK 401
Q RL +FK
Sbjct: 321 QSNRLGALNKFK 332
Score = 127 (49.8 bits), Expect = 5.2e-05, P = 5.2e-05
Identities = 27/50 (54%), Positives = 34/50 (68%)
Query: 102 LVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAVL 148
LVAT++ RG+DI V++V NYD+P DS Y+HRV ARAGR G L
Sbjct: 339 LVATDVAARGLDIPLVDVVINYDIPTDSKAYIHRVGRTARAGRAGKSIAL 388
>UNIPROTKB|F6SXL5 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00641926 SMR:F6SXL5 Ensembl:ENST00000415515
Ensembl:ENST00000418760 Ensembl:ENST00000418897
Ensembl:ENST00000429022 Ensembl:ENST00000438883
Ensembl:ENST00000448658 Ensembl:ENST00000455324 Uniprot:F6SXL5
Length = 136
Score = 178 (67.7 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 35/44 (79%), Positives = 38/44 (86%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCH 188
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V VLVMCH
Sbjct: 93 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCH 136
Score = 160 (61.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 40 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 78
>FB|FBgn0032919 [details] [associations]
symbol:CG9253 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
EMBL:AY121677 ProteinModelPortal:Q8MRB7 SMR:Q8MRB7 STRING:Q8MRB7
PaxDb:Q8MRB7 PRIDE:Q8MRB7 FlyBase:FBgn0032919 InParanoid:Q8MRB7
OrthoDB:EOG4V41Q7 ArrayExpress:Q8MRB7 Bgee:Q8MRB7 Uniprot:Q8MRB7
Length = 507
Score = 312 (114.9 bits), Expect = 1.6e-27, P = 1.6e-27
Identities = 74/266 (27%), Positives = 137/266 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ A++G GKT F L L L + LV+ TRELAFQI +++E
Sbjct: 95 ALQGKDVIGLAETGSGKTGAFALPILHALLENPQRYFALVLTPTRELAFQIGEQFEALGS 154
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ IK V GG+ + L P I++ TPGR++ + N K NL +K+ ++DE
Sbjct: 155 GIG-IKCCVVVGGMDMVAQGLQL-AKKPHIIIATPGRLVDHLENMKGFNLKAIKYLVMDE 212
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L ++ ++ +I + P ++ +FSAT++K+++ + + + DP++V V ++ +
Sbjct: 213 ADRILN-MDFEVELDKILKVLPRERRTFLFSATMTKKVKKLQRASLKDPVKVEVSNKYQ- 270
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQQ Y+ + L N +IF + + + +L A+ +
Sbjct: 271 TVEQLQQSYLFIPVKYKDVYLVHILNELAGNSFMIFCSTCNNTVKTALMLRALGLAAIPL 330
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAIT 410
H M+Q +RL +FK ++ + I+
Sbjct: 331 HGQMSQNKRLAALNKFKAKNRSILIS 356
Score = 117 (46.2 bits), Expect = 0.00075, P = 0.00075
Identities = 25/50 (50%), Positives = 36/50 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGTKAV 147
IL++T++ RG+DI V++V N+D+P S Y+HRV ARAGR G KA+
Sbjct: 353 ILISTDVASRGLDIPHVDVVVNFDIPTHSKDYIHRVGRTARAGRSG-KAI 401
>UNIPROTKB|F1LP27 [details] [associations]
symbol:Eif4a2 "Eukaryotic initiation factor 4A-II"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1309225 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
IPI:IPI00949972 Ensembl:ENSRNOT00000066369 ArrayExpress:F1LP27
Uniprot:F1LP27
Length = 312
Score = 260 (96.6 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 69/226 (30%), Positives = 114/226 (50%)
Query: 189 TREL---AFQISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
+REL AF+I K YM GG ++ + + L+ P IVVGTPGR+
Sbjct: 12 SRELYNYAFKIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 70
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
++ + L+ +K F+LDE D+ML + + + EIF+ + QV++ SAT+ ++ V
Sbjct: 71 MLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 129
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSV 364
KKFM DP+ + V E +LTL G++Q Y+ + L Q VIF+ +
Sbjct: 130 TKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTR 188
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+ L+ + ++F ++H M Q+ER +EF+ + IT
Sbjct: 189 RKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLIT 234
Score = 150 (57.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 230 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 277
Score = 65 (27.9 bits), Expect = 2.5e-27, Sum P(2) = 2.5e-27
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 275 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 311
>DICTYBASE|DDB_G0281711 [details] [associations]
symbol:ddx27 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0042254 "ribosome biogenesis" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0281711 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000152_GR GO:GO:0042254 GO:GO:0003723
EMBL:AAFI02000042 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_640597.1 HSSP:Q5STU4 ProteinModelPortal:Q54TJ4
STRING:Q54TJ4 EnsemblProtists:DDB0234201 GeneID:8623207
KEGG:ddi:DDB_G0281711 OMA:SEYRAIR Uniprot:Q54TJ4
Length = 783
Score = 316 (116.3 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 84/265 (31%), Positives = 137/265 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN---VYVLVMCHTRELAFQISKEYER 202
A+ G DIL A +G GKTA F+L L++L DS + VL++ TRELA Q E
Sbjct: 224 ALNGKDILASASTGSGKTAAFLLPVLERLLFRDSEYRAIRVLILLPTRELALQCQSVMEN 283
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFI 261
+++ SNI + GGL + E L+ +P +V+ TPGR++ + N + L L+ I
Sbjct: 284 LAQF-SNITSCLIVGGLSNKAQEVELRK-SPDVVIATPGRLIDHLLNAHGIGLDDLEILI 341
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D++L+ + + ++ +I S P +Q M+FSATL+ E++ + K + P+ V VD
Sbjct: 342 LDEADRLLD-MGFKDEINKIVESCPTNRQTMLFSATLNDEVKTLAKLSLQQPIRVQVDAL 400
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--FNQ--VVIFVKSVTRCIALSTLLSEQ 377
++T L+Q +V + FNQ +IF +S L +
Sbjct: 401 MQVT-STLEQEFVKIKPQHLSDRPAILLSLCTRVFNQGGTIIFCRSKKEVHRLRIIFGLS 459
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKD 402
+ A +H ++QE+R Q+F+D
Sbjct: 460 DLKAAELHGNLSQEQRFDSLQQFRD 484
>TIGR_CMR|CPS_1418 [details] [associations]
symbol:CPS_1418 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 OMA:FRNLCAI
HOGENOM:HOG000268807 RefSeq:YP_268161.1 ProteinModelPortal:Q485V4
GeneID:3523021 KEGG:cps:CPS_1418 PATRIC:21466051
BioCyc:CPSY167879:GI48-1499-MONOMER Uniprot:Q485V4
Length = 401
Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
Identities = 79/262 (30%), Positives = 134/262 (51%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQL-----ETTDS----NVYVLVMCHTRELAFQISKE 199
G DI+ A++G GKTA FVL L+QL ET + L++ TRELA Q+
Sbjct: 38 GKDIIAAAQTGTGKTASFVLPLLEQLNSQYKETGKKLRAKRIRALILVPTRELAVQVEAS 97
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+++KY+ +I +GG+ Q+ ++ L I+V TPGR+L + + L+ L
Sbjct: 98 ISQYAKYL-DISSMAMYGGVDAQEQKQRL-IWGVDILVATPGRLLDMTHQRVLHFDELDM 155
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVD 319
+LDE D+ML+ + D+ +I P +Q ++FSAT+S+E+R + K+ +H P+E+ +
Sbjct: 156 LVLDEADRMLD-MGFIDDINKIIERLPEHRQNLLFSATMSEEVRGLAKRTIHKPVEISIG 214
Query: 320 DEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
+ K + ++Q V + Q +IF+++ L + L ++
Sbjct: 215 AD-KASKPKIEQWLVTVDKANKSALLSHIITTQNWQQALIFIETKHGAAKLVSQLEKRGI 273
Query: 380 PAVSIHRGMTQEERLKKYQEFK 401
A SIH G Q+ R K +FK
Sbjct: 274 VAESIHSGRAQDIREKILNDFK 295
Score = 128 (50.1 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 32/82 (39%), Positives = 45/82 (54%)
Query: 64 LAKQKEVKGAYV-SIHSSGFRDFLLKPEILRAIVDCW-RILVATNLFGRGMDIERVNIVF 121
L Q E +G SIHS +D ++ +IL + LVAT + RG+DI ++ V
Sbjct: 264 LVSQLEKRGIVAESIHSGRAQD--IREKILNDFKSGKIKFLVATAIAARGLDIGELSRVI 321
Query: 122 NYDMPEDSDTYLHRVARAGRFG 143
NYD+P D Y+HR+ R GR G
Sbjct: 322 NYDLPAQVDDYIHRIGRTGRAG 343
>ZFIN|ZDB-GENE-031030-3 [details] [associations]
symbol:ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
49" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031030-3 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K14778
HOVERGEN:HBG100512 CTD:54555 EMBL:BC047834 IPI:IPI00551936
RefSeq:NP_938179.1 UniGene:Dr.77634 ProteinModelPortal:Q7ZUT9
STRING:Q7ZUT9 GeneID:386632 KEGG:dre:386632 InParanoid:Q7ZUT9
NextBio:20813961 ArrayExpress:Q7ZUT9 Uniprot:Q7ZUT9
Length = 468
Score = 306 (112.8 bits), Expect = 4.4e-27, P = 4.4e-27
Identities = 79/265 (29%), Positives = 138/265 (52%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D + AK+G GKTA FVL LQ+L V+ LV+ TRELA+QI++++
Sbjct: 35 AILDGRDCMGCAKTGSGKTAAFVLPVLQKLSEDPYGVFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +VV TPGR+ +R+ +NL+ ++ I+D
Sbjct: 95 KPLG-LKDCIIVGGMDMVTQGLEL-SKKPHVVVATPGRLADHIRSSDTINLNRIQFLIMD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + +D++ I + P +Q ++FSATL+ ++ + M+ P + + +
Sbjct: 153 EADRLLEQGCTDFTKDLEVILSAVPAKRQTLLFSATLTDTLQQLQSIAMNRPF--FWEHK 210
Query: 322 AKL-TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQ----VVIFVKSVTRCIALSTLLSE 376
+ + T+ L Q ++ + ++IF + C L+ +L E
Sbjct: 211 SDVQTVEELDQRFILTPEKVKDAYLVHLIQTFQDEHDDWSIIIFTNTCKSCQILTMMLRE 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
NFP +S+H M Q +R +FK
Sbjct: 271 FNFPTISLHSMMKQRQRFANLAKFK 295
>UNIPROTKB|F1NA53 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 EMBL:AADN02071779 EMBL:AADN02071780
IPI:IPI00684751 ProteinModelPortal:F1NA53
Ensembl:ENSGALT00000004949 ArrayExpress:F1NA53 Uniprot:F1NA53
Length = 402
Score = 304 (112.1 bits), Expect = 4.5e-27, P = 4.5e-27
Identities = 82/260 (31%), Positives = 130/260 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D L AK+G GKTA FVL LQ L ++ LV+ TRELA+QI++++ K +
Sbjct: 39 GRDCLGCAKTGSGKTAAFVLPVLQVLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLG 98
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDK 267
+K V GGL + L + P +V+ TPGR+ +R+ +L LK +LDE D+
Sbjct: 99 -LKDCVVVGGLDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADR 156
Query: 268 MLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
+LEQ + D++ I + P +Q ++FSATL+ + + M+ P E + T
Sbjct: 157 LLEQGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVR-T 215
Query: 326 LHGLQQHYV----XXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+ L Q Y+ D E ++IF K+ C L+ +L + +FP+
Sbjct: 216 VDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPS 275
Query: 382 VSIHRGMTQEERLKKYQEFK 401
V++H M Q +R +FK
Sbjct: 276 VALHSMMKQRQRFAALAKFK 295
>WB|WBGene00020284 [details] [associations]
symbol:mel-46 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0006898 "receptor-mediated endocytosis"
evidence=IMP] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0006898
GO:GO:0040010 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
KO:K13131 GeneTree:ENSGT00530000062880 EMBL:CU457744 EMBL:EU051652
RefSeq:NP_001255908.1 RefSeq:NP_001255909.1 UniGene:Cel.7369
ProteinModelPortal:G5ED26 SMR:G5ED26 EnsemblMetazoa:T06A10.1a
EnsemblMetazoa:T06A10.1b GeneID:178469 KEGG:cel:CELE_T06A10.1
CTD:178469 WormBase:T06A10.1a WormBase:T06A10.1b OMA:SATYPRN
NextBio:901260 Uniprot:G5ED26
Length = 973
Score = 315 (115.9 bits), Expect = 5.0e-27, P = 5.0e-27
Identities = 77/268 (28%), Positives = 139/268 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+LG D+L QAKSG GKT VF + ++ L++ S++ +++ TRE++ QI + + +
Sbjct: 57 LLGRDMLVQAKSGTGKTLVFSVLAVENLDSRSSHIQKVIVTPTREISVQIKETVRKVAP- 115
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
+ + V+ GG + + LK PQIV+GTPGRI LV+ +N+S + F+LDE D
Sbjct: 116 -TGARTSVYVGGSAHKLNLIDLKQTRPQIVIGTPGRIAQLVKLGAMNMSHVDFFVLDEAD 174
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTL 326
K+++++ R D+ I S P +QV +FSAT + + + F+ D V + + + L
Sbjct: 175 KLMDEV-FRDDINIIINSLPQIRQVAVFSATYPRNLDNLLSTFLRDAALVRFNAD-DVQL 232
Query: 327 HGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHR 386
G++Q YV + + Q ++F +++C ++T L +
Sbjct: 233 FGIKQ-YVVAKCSPMLEKLTHVLKSIRYVQALVFCDQISKCEPIATHLKSSGLDVTFVSS 291
Query: 387 GMTQEERLKKYQEFKDFHKGLAITFASD 414
M+Q++R + + K + I +SD
Sbjct: 292 AMSQKDRQLAVDQLRA--KRVKILVSSD 317
>MGI|MGI:2136689 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0016787 "hydrolase activity"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 MGI:MGI:2136689 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 HOVERGEN:HBG100512 CTD:54555
OrthoDB:EOG4C87SC EMBL:BC099554 IPI:IPI00354271
RefSeq:NP_001020093.2 UniGene:Mm.388127 UniGene:Mm.440659
ProteinModelPortal:Q4FZF3 SMR:Q4FZF3 PhosphoSite:Q4FZF3
PRIDE:Q4FZF3 Ensembl:ENSMUST00000008004 GeneID:234374
KEGG:mmu:234374 UCSC:uc009lzu.1 InParanoid:Q4FZF3 NextBio:382139
Bgee:Q4FZF3 CleanEx:MM_DDX49 Genevestigator:Q4FZF3
GermOnline:ENSMUSG00000057788 Uniprot:Q4FZF3
Length = 480
Score = 305 (112.4 bits), Expect = 7.0e-27, P = 7.0e-27
Identities = 80/265 (30%), Positives = 137/265 (51%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D L AK+G GKTA FVL LQ+L ++ LV+ TRELA+QI++++
Sbjct: 35 AILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +V+ TPGR+ +R+ N+ ++ ++D
Sbjct: 95 KPLG-LKDCIIVGGMDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFNMKKIQFLVMD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + D++ I + P +Q ++FSATL+ ++ + ++P + + +
Sbjct: 153 EADRLLEQGCTDFTTDLETILAAVPARRQTLLFSATLTDTLKELQGLATNEPF--FWEAQ 210
Query: 322 AKL-TLHGLQQHYVXX----XXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
A + T+ L Q Y+ D LE ++IF + C L +L +
Sbjct: 211 ATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRK 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
NFP V++H M Q+ER +FK
Sbjct: 271 FNFPTVALHSMMKQKERFAALAKFK 295
>RGD|1311124 [details] [associations]
symbol:Ddx49 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 49"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 RGD:1311124 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 IPI:IPI00362462 PRIDE:E9PTF0
Ensembl:ENSRNOT00000004891 UCSC:RGD:1311124 Uniprot:E9PTF0
Length = 480
Score = 305 (112.4 bits), Expect = 7.0e-27, P = 7.0e-27
Identities = 81/265 (30%), Positives = 135/265 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D L AK+G GKTA FVL LQ+L ++ LV+ TRELA+QI++++
Sbjct: 35 AILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +V+ TPGR+ +R+ N+ ++ +LD
Sbjct: 95 KPLG-LKDCIIVGGMDMVTQALEL-SRKPHVVIATPGRLADHLRSSNTFNMKKIRFLVLD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + D++ I + P +Q ++FSATL+ ++ + + P + + +
Sbjct: 153 EADRLLEQGCTDFTADLETILSAVPARRQTLLFSATLTDTLKELQGLATNQPF--FWEAQ 210
Query: 322 AKL-TLHGLQQHYVXX----XXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
A + T+ L Q Y+ D LE ++IF + C L +L +
Sbjct: 211 ATVRTVEQLDQRYLLVPEKVKDAYLVHLVQTFQDQLEDCSIIIFTNTCKTCQILCMMLRK 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
NFP V++H M Q+ER FK
Sbjct: 271 FNFPTVALHSMMKQKERFAALARFK 295
>UNIPROTKB|Q48AV0 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 71/255 (27%), Positives = 136/255 (53%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQL---ETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
D++ +A++G GKTA F L LQQL + + LV+ TRELA Q+ K + + ++
Sbjct: 44 DVMARAQTGTGKTAAFALPILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQF- 102
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
+++ +G+ +GG+ +K LK I++ TPGR+L L+R + ++LS ++ + DE D+
Sbjct: 103 TDVTIGIAYGGVSTKKQISELKV-GVDILIATPGRLLDLLRTESVSLSNIETLVFDEADR 161
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+ + + ++ +I + P TKQ ++FSAT + +I + K + +P V +D++ K
Sbjct: 162 MLD-MGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA-D 219
Query: 328 GLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q + QV++F ++ L+ +++ +++IH
Sbjct: 220 DVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGD 279
Query: 388 MTQEERLKKYQEFKD 402
+Q R K EFK+
Sbjct: 280 KSQGAREKALHEFKE 294
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 37/118 (31%), Positives = 63/118 (53%)
Query: 62 DALAKQKEVKGAY-VSIH---SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D LAK+ G ++IH S G R+ L E V R L+AT++ RG+DI+ +
Sbjct: 260 DDLAKEMTKDGVKSLAIHGDKSQGAREKALH-EFKEGKV---RALIATDVAARGIDIKGL 315
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLE 175
+ V NY++P +++ Y+HR+ R R G L + ++ + + TA+ L +Q L+
Sbjct: 316 SHVINYELPYNAEDYVHRIGRTARAGNSG-LAVSLVSPGEEWL-LTAIEELLDIQLLQ 371
>TIGR_CMR|CPS_0042 [details] [associations]
symbol:CPS_0042 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268807 RefSeq:YP_266818.1 ProteinModelPortal:Q48AV0
GeneID:3521124 KEGG:cps:CPS_0042 PATRIC:21463513 OMA:AITESAY
BioCyc:CPSY167879:GI48-153-MONOMER Uniprot:Q48AV0
Length = 420
Score = 302 (111.4 bits), Expect = 7.3e-27, P = 7.3e-27
Identities = 71/255 (27%), Positives = 136/255 (53%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQL---ETTDSNVYVLVMCHTRELAFQISKEYERFSKYM 207
D++ +A++G GKTA F L LQQL + + LV+ TRELA Q+ K + + ++
Sbjct: 44 DVMARAQTGTGKTAAFALPILQQLISVQPCKPELRALVLTPTRELAQQVHKSFCHYGQF- 102
Query: 208 SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDK 267
+++ +G+ +GG+ +K LK I++ TPGR+L L+R + ++LS ++ + DE D+
Sbjct: 103 TDVTIGIAYGGVSTKKQISELKV-GVDILIATPGRLLDLLRTESVSLSNIETLVFDEADR 161
Query: 268 MLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLH 327
ML+ + + ++ +I + P TKQ ++FSAT + +I + K + +P V +D++ K
Sbjct: 162 MLD-MGFKEEIDQITQYLPKTKQTLLFSATFADDIYKMSKNILVEPKMVEIDEKNKAA-D 219
Query: 328 GLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q + QV++F ++ L+ +++ +++IH
Sbjct: 220 DVEQLVYGVDADRKRELTSFLIGSRNWKQVLVFTRTKQCADDLAKEMTKDGVKSLAIHGD 279
Query: 388 MTQEERLKKYQEFKD 402
+Q R K EFK+
Sbjct: 280 KSQGAREKALHEFKE 294
Score = 120 (47.3 bits), Expect = 0.00026, P = 0.00026
Identities = 37/118 (31%), Positives = 63/118 (53%)
Query: 62 DALAKQKEVKGAY-VSIH---SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D LAK+ G ++IH S G R+ L E V R L+AT++ RG+DI+ +
Sbjct: 260 DDLAKEMTKDGVKSLAIHGDKSQGAREKALH-EFKEGKV---RALIATDVAARGIDIKGL 315
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLE 175
+ V NY++P +++ Y+HR+ R R G L + ++ + + TA+ L +Q L+
Sbjct: 316 SHVINYELPYNAEDYVHRIGRTARAGNSG-LAVSLVSPGEEWL-LTAIEELLDIQLLQ 371
>TIGR_CMR|VC_2564 [details] [associations]
symbol:VC_2564 "ATP-dependent RNA helicase DbpA"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083
KO:K05591 ProtClustDB:PRK11776 InterPro:IPR005580 Pfam:PF03880
OMA:THEKSTI PIR:B82060 RefSeq:NP_232192.1 ProteinModelPortal:Q9KP15
DNASU:2615581 GeneID:2615581 KEGG:vch:VC2564 PATRIC:20084152
Uniprot:Q9KP15
Length = 460
Score = 303 (111.7 bits), Expect = 8.4e-27, P = 8.4e-27
Identities = 84/296 (28%), Positives = 143/296 (48%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D++ Q K+G GKTA F L L L V LV+C TRELA Q++ +
Sbjct: 37 AILKGQDVIGQGKTGSGKTAAFGLGVLSNLNVKRFRVQALVLCPTRELADQVATDIRTLG 96
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ + NIKV GG+P+ L+ H I+VGTPGRIL + +++LS L +LDE
Sbjct: 97 RAIHNIKVLTLCGGMPMGPQIGSLE-HGAHILVGTPGRILDHLSKDRIDLSELNTLVLDE 155
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+MLE + + ++ I ++P +Q ++FSAT I + + + + + V EA
Sbjct: 156 ADRMLE-MGFQEALEAIIAAAPAERQTLLFSATYPASIEQIAQSVTRNALMIKV--EATH 212
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQV--VIFVKSVTRCIALSTLLSEQNFPAV 382
++Q++ +L V+F + ++ L + F +
Sbjct: 213 DTSSIRQYFYKVEGSAARDEALETL-LLHHQPTSSVVFCNTKREVQNVADALHQSGFSVI 271
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKI-LNNVQDRFDVSISELPD 437
+H M Q ER + +F + K ++I A+D + ++N+ F+ +S P+
Sbjct: 272 ELHGDMEQRERDQALVQFAN--KSISILVATDVAARGLDVDNLDAVFNYDLSRDPE 325
Score = 132 (51.5 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 30/90 (33%), Positives = 53/90 (58%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILR-----AIVDCWR----ILVATNLFGRGMDIERV 117
++EV+ ++H SGF L ++ + A+V ILVAT++ RG+D++ +
Sbjct: 253 KREVQNVADALHQSGFSVIELHGDMEQRERDQALVQFANKSISILVATDVAARGLDVDNL 312
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+ VFNYD+ D + ++HR+ R GR G+K +
Sbjct: 313 DAVFNYDLSRDPEVHVHRIGRTGRAGSKGL 342
Score = 48 (22.0 bits), Expect = 3.3e-06, Sum P(2) = 3.3e-06
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSI--SELP 436
KGLA +F SD N++ + + + D++I S LP
Sbjct: 340 KGLAFSFFSD-NESYRVAQIDEYMDIAIEPSTLP 372
>UNIPROTKB|F1NYX0 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00670000098028 OMA:CQLLSMT EMBL:AADN02071779
EMBL:AADN02071780 IPI:IPI00822654 Ensembl:ENSGALT00000035055
ArrayExpress:F1NYX0 Uniprot:F1NYX0
Length = 482
Score = 304 (112.1 bits), Expect = 9.3e-27, P = 9.3e-27
Identities = 82/260 (31%), Positives = 130/260 (50%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D L AK+G GKTA FVL LQ L ++ LV+ TRELA+QI++++ K +
Sbjct: 42 GRDCLGCAKTGSGKTAAFVLPVLQVLSEDPYGIFCLVLTPTRELAYQIAEQFRVLGKPLG 101
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDECDK 267
+K V GGL + L + P +V+ TPGR+ +R+ +L LK +LDE D+
Sbjct: 102 -LKDCVVVGGLDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFSLKKLKFLVLDEADR 159
Query: 268 MLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
+LEQ + D++ I + P +Q ++FSATL+ + + M+ P E + T
Sbjct: 160 LLEQGCADFTADLEVILEAVPARRQTLLFSATLTDTLNELKSLAMNRPFFWEAASEVR-T 218
Query: 326 LHGLQQHYV----XXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+ L Q Y+ D E ++IF K+ C L+ +L + +FP+
Sbjct: 219 VDELDQRYLLVPEAVKDAYLVHLIQTFQDEHEDWSIIIFTKTCKECQILNMMLRKFSFPS 278
Query: 382 VSIHRGMTQEERLKKYQEFK 401
V++H M Q +R +FK
Sbjct: 279 VALHSMMKQRQRFAALAKFK 298
>UNIPROTKB|Q9NZE6 [details] [associations]
symbol:EIF4A2 "BM-010" species:9606 "Homo sapiens"
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003743 "translation initiation factor activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CH471052 GO:GO:0003743 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 HOGENOM:HOG000268797
HOVERGEN:HBG107989 HSSP:P10081 EMBL:AC112907 UniGene:Hs.518475
UniGene:Hs.599481 HGNC:HGNC:3284 ChiTaRS:EIF4A2 EMBL:AF208852
IPI:IPI00030296 SMR:Q9NZE6 STRING:Q9NZE6 Ensembl:ENST00000356531
UCSC:uc003fqv.3 Uniprot:Q9NZE6
Length = 312
Score = 255 (94.8 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 68/226 (30%), Positives = 113/226 (50%)
Query: 189 TRELAF---QISKEYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILA 245
+REL F +I K YM GG ++ + + L+ P IVVGTPGR+
Sbjct: 12 SRELLFPVLKIQKVILALGDYMG-ATCHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFD 70
Query: 246 LVRNKKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPV 305
++ + L+ +K F+LDE D+ML + + + EIF+ + QV++ SAT+ ++ V
Sbjct: 71 MLNRRYLSPKWIKMFVLDEADEMLSR-GFKDQIYEIFQKLNTSIQVVLLSATMPTDVLEV 129
Query: 306 CKKFMHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSV 364
KKFM DP+ + V E +LTL G++Q Y+ + L Q VIF+ +
Sbjct: 130 TKKFMRDPIRILVKKE-ELTLEGIKQFYINVEREEWKLDTLCDLYETLTITQAVIFLNTR 188
Query: 365 TRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAIT 410
+ L+ + ++F ++H M Q+ER +EF+ + IT
Sbjct: 189 RKVDWLTEKMHARDFTVSALHGDMDQKERDVIMREFRSGSSRVLIT 234
Score = 150 (57.9 bits), Expect = 1.0e-10, Sum P(2) = 1.0e-10
Identities = 23/48 (47%), Positives = 37/48 (77%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L+ T+L RG+D+++V++V NYD+P + + Y+HR+ R GRFG K V
Sbjct: 230 RVLITTDLLARGIDVQQVSLVINYDLPTNRENYIHRIGRGGRFGRKGV 277
Score = 65 (27.9 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
Identities = 13/38 (34%), Positives = 26/38 (68%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++E D +IL +++ ++ ++ E+P + DL
Sbjct: 275 KGVAINFVTEE-DKRILRDIETFYNTTVEEMPMNVADL 311
>CGD|CAL0000864 [details] [associations]
symbol:DRS1 species:5476 "Candida albicans" [GO:0035690
"cellular response to drug" evidence=IMP] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0030687 "preribosome, large subunit precursor"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864 GO:GO:0005524
GO:GO:0005730 GO:GO:0042254 GO:GO:0003723 GO:GO:0035690
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
KO:K13181 RefSeq:XP_719395.1 ProteinModelPortal:Q5ACK7
STRING:Q5ACK7 GeneID:3639045 KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 307 (113.1 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 76/261 (29%), Positives = 143/261 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTRELAFQISKEYERFS 204
A+LG DI+ A++G GKT +++ +++L S + V+++ TRELA Q+ + ++ S
Sbjct: 164 ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLS 223
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFILD 263
+++N+ +G+ GGL +++ EE LKT P IV+ TPGR++ +RN ++ ++ ++D
Sbjct: 224 HHVNNLNIGLAVGGLNLRQQEEQLKTR-PDIVIATPGRLIDHIRNSPSFSVQDIQVLVID 282
Query: 264 ECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D+MLE+ + ++ EI P H +Q ++FSAT++ I+ + + + P+ + +D
Sbjct: 283 EADRMLEE-GFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--FNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ LQQ +V +L+ ++VV+FV L +L
Sbjct: 342 SVASKLLQQ-FVRIRKRDQLKPALLY-QLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK 399
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+H +TQE+RL+ + FK
Sbjct: 400 VSELHGALTQEQRLQNVKNFK 420
Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGT 144
+L+ T+L RG+DI ++ +V NYDMP+ + YLHRV ARAGR GT
Sbjct: 426 VLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGT 472
>UNIPROTKB|Q5ACK7 [details] [associations]
symbol:DRS1 "ATP-dependent RNA helicase DRS1"
species:237561 "Candida albicans SC5314" [GO:0035690 "cellular
response to drug" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 CGD:CAL0000864
GO:GO:0005524 GO:GO:0005730 GO:GO:0042254 GO:GO:0003723
GO:GO:0035690 EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K13181 RefSeq:XP_719395.1
ProteinModelPortal:Q5ACK7 STRING:Q5ACK7 GeneID:3639045
KEGG:cal:CaO19.7635 Uniprot:Q5ACK7
Length = 613
Score = 307 (113.1 bits), Expect = 1.3e-26, P = 1.3e-26
Identities = 76/261 (29%), Positives = 143/261 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS-NVYVLVMCHTRELAFQISKEYERFS 204
A+LG DI+ A++G GKT +++ +++L S + V+++ TRELA Q+ + ++ S
Sbjct: 164 ALLGKDIVAGAQTGSGKTGAYMIPIIERLLYKPSTSTKVIILTPTRELALQVYEFGKKLS 223
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFILD 263
+++N+ +G+ GGL +++ EE LKT P IV+ TPGR++ +RN ++ ++ ++D
Sbjct: 224 HHVNNLNIGLAVGGLNLRQQEEQLKTR-PDIVIATPGRLIDHIRNSPSFSVQDIQVLVID 282
Query: 264 ECDKMLEQLEMRRDVQEIFRSSP-HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
E D+MLE+ + ++ EI P H +Q ++FSAT++ I+ + + + P+ + +D
Sbjct: 283 EADRMLEE-GFQDELTEILSLIPKHKRQTLLFSATMNTRIQDLIQLSLQKPVRIMIDPPK 341
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--FNQVVIFVKSVTRCIALSTLLSEQNFP 380
+ LQQ +V +L+ ++VV+FV L +L
Sbjct: 342 SVASKLLQQ-FVRIRKRDQLKPALLY-QLLKGVSSRVVVFVARKETAHRLRIVLGLLGLK 399
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
+H +TQE+RL+ + FK
Sbjct: 400 VSELHGALTQEQRLQNVKNFK 420
Score = 128 (50.1 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 25/47 (53%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV---ARAGRFGT 144
+L+ T+L RG+DI ++ +V NYDMP+ + YLHRV ARAGR GT
Sbjct: 426 VLICTDLAARGLDIPKIELVINYDMPKTFEIYLHRVGRTARAGRDGT 472
>FB|FBgn0021995 [details] [associations]
symbol:Rs1 "Rs1" species:7227 "Drosophila melanogaster"
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0042254
"ribosome biogenesis" evidence=NAS] [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 EMBL:AE013599 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GO:GO:0016779 HSSP:P10081 GeneTree:ENSGT00550000074997 KO:K13181
CTD:6247 EMBL:BT004908 RefSeq:NP_651970.1 UniGene:Dm.11481
SMR:Q7JQN4 STRING:Q7JQN4 EnsemblMetazoa:FBtr0088788 GeneID:44087
KEGG:dme:Dmel_CG2173 UCSC:CG2173-RA FlyBase:FBgn0021995
InParanoid:Q7JQN4 OMA:EHYIHRV OrthoDB:EOG42NGFQ GenomeRNAi:44087
NextBio:836725 Uniprot:Q7JQN4
Length = 782
Score = 308 (113.5 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 81/277 (29%), Positives = 151/277 (54%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSN----VYVLVMCHTRELAFQISKEYE 201
A+LG DI A +G GKTA ++L TL++L N VLV+ TREL Q+ + +
Sbjct: 191 ALLGRDICGCAATGTGKTAAYMLPTLERLLYRPLNNKAITRVLVLVPTRELGAQVYQVTK 250
Query: 202 RFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHF 260
+ ++ + I VG+ GGL ++ E L+ NP IV+ TPGR++ ++N L ++
Sbjct: 251 QLCQF-TTIDVGLAIGGLDVKAQEAVLR-QNPDIVIATPGRLIDHIKNTPSFTLDSIEVL 308
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
ILDE D+ML++ ++EI S T+Q M+FSAT+S++++ + + P++V+V++
Sbjct: 309 ILDEADRMLDEY-FAEQMKEIINSCCKTRQTMLFSATMSEQVKDLAAVSLDKPIKVFVNN 367
Query: 321 EAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVL--EFNQ-VVIFVKSVTRCIALSTLLSEQ 377
++ + L+Q ++ ++ F+ ++FV++ + L LL
Sbjct: 368 NQQVAFN-LRQEFIRIREDKEGDREPILASLICRTFHDHCMVFVQTKKQAHRLHILLGLL 426
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
A +H +TQ++RL+ ++FK+ + + + A+D
Sbjct: 427 GVRAGELHGNLTQQQRLESLKKFKE--EQIDVLIATD 461
>TIGR_CMR|SO_3783 [details] [associations]
symbol:SO_3783 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:AE014299
GenomeReviews:AE014299_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
HSSP:Q58083 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_719320.1 ProteinModelPortal:Q8EAV8 GeneID:1171430
KEGG:son:SO_3783 PATRIC:23527244 ProtClustDB:CLSK2393932
Uniprot:Q8EAV8
Length = 535
Score = 301 (111.0 bits), Expect = 3.5e-26, P = 3.5e-26
Identities = 83/262 (31%), Positives = 131/262 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQL----ETTDSNVYVLVMCHTRELAFQISKEY 200
AVL G D++ A++G GKTA F L L+ L + LV+ TRELA Q+ +
Sbjct: 34 AVLTGKDVMAAAQTGTGKTAGFTLPLLELLAKGHKAKSGQTRALVLTPTRELAAQVGESV 93
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
E + KY+ ++ V FGG+PI L+ H ++V TPGR+L LV+ + + L+
Sbjct: 94 ETYGKYLP-LRSAVVFGGVPINPQINKLR-HGVDVLVATPGRLLDLVQQNAVKFNQLEIL 151
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D+ML+ + RD+++I P +Q +MFSAT S EIR + K ++ P+E+ V
Sbjct: 152 VLDEADRMLD-MGFIRDIKKILALLPAKRQNLMFSATFSDEIRELAKGLVNHPVEISVTP 210
Query: 321 E-AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNF 379
A T ++Q + QV++F ++ L+ L +
Sbjct: 211 RNAAATT--VKQWICPVDKTQKSALLIQLIKQENWQQVLVFSRTKHGANRLAKSLIQAEI 268
Query: 380 PAVSIHRGMTQEERLKKYQEFK 401
A +IH +Q R K +FK
Sbjct: 269 SAAAIHGNKSQGARTKALADFK 290
>TAIR|locus:2130918 [details] [associations]
symbol:AT4G16630 species:3702 "Arabidopsis thaliana"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA;ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003723 EMBL:Z97341 EMBL:AL161544 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000265456 KO:K13181
OMA:RIRKRDH EMBL:AJ010475 EMBL:AK228353 IPI:IPI00542014 PIR:D71433
PIR:T51310 RefSeq:NP_193396.3 UniGene:At.49
ProteinModelPortal:Q9ZRZ8 SMR:Q9ZRZ8 IntAct:Q9ZRZ8 STRING:Q9ZRZ8
PaxDb:Q9ZRZ8 PRIDE:Q9ZRZ8 EnsemblPlants:AT4G16630.1 GeneID:827364
KEGG:ath:AT4G16630 GeneFarm:955 TAIR:At4g16630 InParanoid:Q9ZRZ8
PhylomeDB:Q9ZRZ8 ProtClustDB:CLSN2690957 Genevestigator:Q9ZRZ8
GermOnline:AT4G16630 Uniprot:Q9ZRZ8
Length = 789
Score = 300 (110.7 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 81/263 (30%), Positives = 135/263 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY---VLVMCHTRELAFQISKEYER 202
A+ G D+ A +G GKTA F L TL++L V+ VL++ TRELA QI +
Sbjct: 201 ALTGRDLCASAITGSGKTAAFALPTLERLLFRPKRVFATRVLILTPTRELAVQIHSMIQN 260
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFI 261
+++ ++IK G+ GGL +++ E L++ P IVV TPGR++ +RN ++L L I
Sbjct: 261 LAQF-TDIKCGLIVGGLSVREQEVVLRSM-PDIVVATPGRMIDHLRNSMSVDLDDLAVLI 318
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D++L Q ++ E+ R P +Q M+FSAT+++E++ + K ++ P+ + D
Sbjct: 319 LDEADRLL-QTGFATEITELVRLCPKRRQTMLFSATMTEEVKELVKLSLNKPLRLSADPS 377
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--F-NQVVIFVKSVTRCIALSTLLSEQN 378
A+ GL + V + F ++V+IF + L L
Sbjct: 378 ARRP-PGLTEEVVRIRRTREANQEAVLLSLCTRTFKSKVIIFSGTKQAAHRLKILFGLAG 436
Query: 379 FPAVSIHRGMTQEERLKKYQEFK 401
A +H +TQ +RL + F+
Sbjct: 437 LKAAELHGNLTQAQRLDSLELFR 459
>TIGR_CMR|BA_2109 [details] [associations]
symbol:BA_2109 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 OMA:MMAINTI HSSP:P10081 HOGENOM:HOG000268811
RefSeq:NP_844507.1 RefSeq:YP_018751.1 RefSeq:YP_028224.1
ProteinModelPortal:Q81RE0 DNASU:1085806
EnsemblBacteria:EBBACT00000011412 EnsemblBacteria:EBBACT00000014072
EnsemblBacteria:EBBACT00000023039 GeneID:1085806 GeneID:2818618
GeneID:2851363 KEGG:ban:BA_2109 KEGG:bar:GBAA_2109 KEGG:bat:BAS1961
ProtClustDB:CLSK886848 BioCyc:BANT260799:GJAJ-2029-MONOMER
BioCyc:BANT261594:GJ7F-2106-MONOMER Uniprot:Q81RE0
Length = 389
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 82/300 (27%), Positives = 147/300 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ ++ +G GKT ++L L ++ V+V+ TREL QI +E ++F+ +
Sbjct: 35 GQDVIAESPTGTGKTLAYLLPLLHKINPEVKQPQVVVLAPTRELVMQIHEEVQKFTAG-T 93
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I GG I++ E LK H P+++VG+PGRIL L+R KKL + +K + DE D++
Sbjct: 94 EISGASLIGGADIKRQVEKLKKH-PRVIVGSPGRILELIRMKKLKMHEVKTIVFDEFDQI 152
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
++Q +M VQ++ +S+ +Q++ FSAT++K + +P V V +L
Sbjct: 153 VKQ-KMMGAVQDVIKSTMRDRQLVFFSATMTKAAEDAARDLAVEPQLVRVTRAESKSL-- 209
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++ Y+ + + + V F+ R ++ L + A ++H
Sbjct: 210 VEHTYIICERREKNDYVRRIMHMGDV-KAVAFLNDPFRLDEITEKLKFRKMKAAALHAEA 268
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIEGR 448
+++ER + F+ L I A+D I ++ D V ELPD +D + GR
Sbjct: 269 SKQEREATMRAFRGGK--LEILLATDIAARGI--DIDDLTHVIHLELPDTVDQYIHRSGR 324
>FB|FBgn0011802 [details] [associations]
symbol:Gem3 "Gemin3" species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0003724 "RNA helicase activity" evidence=ISS] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007528 "neuromuscular junction development"
evidence=IMP] [GO:0015030 "Cajal body" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0022618 "ribonucleoprotein complex
assembly" evidence=IMP] [GO:0071254 "cytoplasmic U snRNP body"
evidence=IDA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE014296 GO:GO:0007528 GO:GO:0006200 GO:GO:0003676
GO:GO:0015030 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014
PROSITE:PS51195 GO:GO:0016779 HSSP:P10081 KO:K13131
GeneTree:ENSGT00530000062880 GO:GO:0071254 GO:GO:0022618
EMBL:AF160911 RefSeq:NP_524019.1 UniGene:Dm.921 SMR:Q9V3C4
IntAct:Q9V3C4 MINT:MINT-750334 STRING:Q9V3C4
EnsemblMetazoa:FBtr0076292 EnsemblMetazoa:FBtr0334100 GeneID:39195
KEGG:dme:Dmel_CG6539 UCSC:CG6539-RA CTD:39195 FlyBase:FBgn0011802
InParanoid:Q9V3C4 OMA:TPTKIQA OrthoDB:EOG44MW6X GenomeRNAi:39195
NextBio:812430 Uniprot:Q9V3C4
Length = 1028
Score = 295 (108.9 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 74/277 (26%), Positives = 134/277 (48%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ MD++ Q+KSG GKT ++V+A +Q + + +++ TRELA Q+ + K
Sbjct: 59 ALAKMDLIIQSKSGTGKTLIYVIAVVQSFNPNINQPHAMIVVPTRELAIQVQDTFFHLCK 118
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ K F GG + KD + + + ++++GTPGR+L L N+ ++S L+ +LDE
Sbjct: 119 SFRDFKCSAFIGGTDVAKDRK--RMNESRVIIGTPGRLLHLYENRVFDVSKLRLLVLDEA 176
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D++ + ++ V ++ + P +Q++ SAT + + K M PM + + A +
Sbjct: 177 DQLYQTKSLQHTVSKLIEAMPKNRQIIACSATYDQNLDERLAKVMDKPMLISNSERATVL 236
Query: 326 LHGLQQH-YVXXXXXXXXXXXXXXXDVLE--FNQV-----VIFVKSVTRCIALSTLLSEQ 377
L G++Q Y +L FNQ+ +IF S R + L+
Sbjct: 237 L-GIRQFVYELPQQNNSVEEMRLKLQILGQIFNQLPYEQAIIFASSQMRADSYKNYLTAS 295
Query: 378 NFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
I M Q ERL ++ +++F + I A+D
Sbjct: 296 GIDCHLISGAMEQSERLHVFEGYRNFT--MRILVATD 330
Score = 151 (58.2 bits), Expect = 6.0e-07, Sum P(2) = 6.0e-07
Identities = 28/48 (58%), Positives = 35/48 (72%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVAT+L RG+D N+V N D P+D TYLHR+ RAGRFG+K +
Sbjct: 324 RILVATDLMARGVDSPHANLVINIDPPQDHVTYLHRIGRAGRFGSKGI 371
Score = 44 (20.5 bits), Expect = 1.9e-25, Sum P(2) = 1.9e-25
Identities = 10/36 (27%), Positives = 19/36 (52%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDV--SISELPDE 438
KG+AITF + + +++ + + S+ E P E
Sbjct: 369 KGIAITFIASKKESQRFREMSKKIATAWSVLEFPKE 404
>UNIPROTKB|F1NTS2 [details] [associations]
symbol:EIF4A3 "Eukaryotic initiation factor 4A-III"
species:9031 "Gallus gallus" [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0004004
"ATP-dependent RNA helicase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0008143 "poly(A) RNA binding"
evidence=IEA] [GO:0017148 "negative regulation of translation"
evidence=IEA] [GO:0035145 "exon-exon junction complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0000184 GO:GO:0017148 GO:GO:0045727 GO:GO:0071013
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
GO:GO:0035145 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0008143
GeneTree:ENSGT00530000062880 IPI:IPI00588271 EMBL:AADN02041229
EMBL:AADN02041230 ProteinModelPortal:F1NTS2
Ensembl:ENSGALT00000038969 OMA:KTRNGVD ArrayExpress:F1NTS2
Uniprot:F1NTS2
Length = 414
Score = 293 (108.2 bits), Expect = 1.9e-25, P = 1.9e-25
Identities = 90/305 (29%), Positives = 147/305 (48%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKY 206
+ G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K SK
Sbjct: 75 IKGRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKVGT--SKS 132
Query: 207 MSNIKVGVFFGGLPIQKDEEYLKT-HN-PQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ +K+ + K E L H + + G ++L ++R + L +K +LDE
Sbjct: 133 LP-VKMKELHKAMGSFKQEVDLPAGHEVARCISGIQLQLLYMIRRRSLRTRAIKMLVLDE 191
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML + + + +++R P QV++ SATL EI + KFM DP+ + V + +L
Sbjct: 192 ADEMLNK-GFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILVKRD-EL 249
Query: 325 TLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
TL G++Q +V D L Q VIF + + L+ + E NF S
Sbjct: 250 TLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTVSS 309
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLST 443
+H M Q+ER K+F G + S + A+ L+ Q ++ +LP+ +L
Sbjct: 310 MHGDMPQKER---ESIMKEFRSGASRVLISTDVWARGLDVPQVSLIINY-DLPNNRELYI 365
Query: 444 YIEGR 448
+ GR
Sbjct: 366 HRIGR 370
Score = 144 (55.7 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 20/48 (41%), Positives = 39/48 (81%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 332 RVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 379
Score = 61 (26.5 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 13/38 (34%), Positives = 23/38 (60%)
Query: 405 KGLAITFASDENDAKILNNVQDRFDVSISELPDEI-DL 441
KG+AI F ++ D +IL +++ + I E+P + DL
Sbjct: 377 KGVAINFVKND-DIRILRDIEQYYSTQIDEMPMNVADL 413
>UNIPROTKB|Q0C4B9 [details] [associations]
symbol:HNE_0695 "Putative ATP-dependent RNA helicase RhlE"
species:228405 "Hyphomonas neptunium ATCC 15444" [GO:0006139
"nucleobase-containing compound metabolic process" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:CP000158
GenomeReviews:CP000158_GR GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807
RefSeq:YP_759424.1 ProteinModelPortal:Q0C4B9 STRING:Q0C4B9
GeneID:4287361 KEGG:hne:HNE_0695 PATRIC:32214196 OMA:LPMITIL
BioCyc:HNEP228405:GI69-738-MONOMER Uniprot:Q0C4B9
Length = 536
Score = 296 (109.3 bits), Expect = 2.5e-25, P = 2.5e-25
Identities = 77/274 (28%), Positives = 137/274 (50%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYV---LVMCHTRELAFQISKEYERF 203
++G D+ A++G GKTA FVL +Q+L T + + L++C TRELA Q+++ +E++
Sbjct: 39 LMGGDVTGVAQTGTGKTAAFVLPMIQRLSTGRARARMPRCLILCPTRELAAQVAENFEKY 98
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
KY+ + + + GG+ K++E L +++ TPGR++ KL + ++ I+D
Sbjct: 99 GKYLK-LTMALLIGGVSF-KEQETLLQRGVDVLIATPGRLMDQFDRGKLLMMGVETLIID 156
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
E D+ML+ + D+++I P +Q ++FSAT +I+ + K F DP ++ V A+
Sbjct: 157 EADRMLD-MGFIPDIEKICAKLPANRQTLLFSATFPTDIQRLAKTFQKDPKKIEVTRPAQ 215
Query: 324 LTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQV---VIFVKSVTRCIALSTLLSEQNFP 380
T + Q V V+E V ++F ++ L++
Sbjct: 216 -TAETISQFVVKLPTNDGKARRTALRRVIEATNVKNGIVFCNRKVEVDIVAASLTKHGHD 274
Query: 381 AVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
A IH + Q R + Q F+D L + ASD
Sbjct: 275 AAPIHGDLPQSVRSETLQRFRDGK--LKLLVASD 306
>UNIPROTKB|F1S7D9 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:EVRTVEQ
GeneTree:ENSGT00670000098028 CTD:54555 EMBL:CU640483
RefSeq:XP_003123587.1 UniGene:Ssc.79767 Ensembl:ENSSSCT00000025399
GeneID:100526038 KEGG:ssc:100526038 Uniprot:F1S7D9
Length = 483
Score = 293 (108.2 bits), Expect = 1.0e-24, P = 1.0e-24
Identities = 79/265 (29%), Positives = 135/265 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D L AK+G GKTA FVL LQ+L ++ LV+ TRELA+QI++++
Sbjct: 35 AILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +V+ TPGR+ +R+ ++ ++ ++D
Sbjct: 95 KPLG-LKDCIIVGGMDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + D++ I + P +Q ++FSATL+ +R + + P + + +
Sbjct: 153 EADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQSLATNQPF--FWEAQ 210
Query: 322 AKL-TLHGLQQHYVXX----XXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
A + T+ L Q Y+ D E ++IF + C L +L +
Sbjct: 211 APVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRK 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
NFP V++H M Q+ER +FK
Sbjct: 271 FNFPTVALHSMMKQKERFAALAKFK 295
>UNIPROTKB|Q9KMW4 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0008026 "ATP-dependent helicase activity" evidence=ISS]
[GO:0008152 "metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 291 (107.5 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 79/261 (30%), Positives = 131/261 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQL----ETTDSNVYVLVMCHTRELAFQISKEY 200
AVL G D++ A++G GKTA F L L+ L + + V L++ TRELA QI
Sbjct: 34 AVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALILTPTRELAAQIQDNV 93
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ +++ +K V FGG+ I + + I+V TPGR++ L + L+
Sbjct: 94 MLYGRHLP-LKSAVVFGGVKINPQMQRM-CKGADILVATPGRLMDLYNQNAVKFDQLEIL 151
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D+ML+ + RD+ +I + P +Q ++FSAT S EIR + K +++P+E+ V
Sbjct: 152 VLDEADRMLD-MGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP 210
Query: 321 EAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
A T ++Q + QV++F+++ L+T L+EQ
Sbjct: 211 -ANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLT 269
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
A +IH +Q R + +FK
Sbjct: 270 AAAIHGNKSQGARTRALADFK 290
>TIGR_CMR|VC_A0204 [details] [associations]
symbol:VC_A0204 "ATP-dependent RNA helicase RhlE"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE003853 GenomeReviews:AE003853_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 KO:K11927 PIR:E82488
RefSeq:NP_232603.1 ProteinModelPortal:Q9KMW4 DNASU:2612352
GeneID:2612352 KEGG:vch:VCA0204 PATRIC:20084977 OMA:AISFCDA
ProtClustDB:CLSK869561 Uniprot:Q9KMW4
Length = 451
Score = 291 (107.5 bits), Expect = 1.6e-24, P = 1.6e-24
Identities = 79/261 (30%), Positives = 131/261 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQL----ETTDSNVYVLVMCHTRELAFQISKEY 200
AVL G D++ A++G GKTA F L L+ L + + V L++ TRELA QI
Sbjct: 34 AVLAGKDVMAAAQTGTGKTAGFTLPILELLAKGPKVRANQVRALILTPTRELAAQIQDNV 93
Query: 201 ERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHF 260
+ +++ +K V FGG+ I + + I+V TPGR++ L + L+
Sbjct: 94 MLYGRHLP-LKSAVVFGGVKINPQMQRM-CKGADILVATPGRLMDLYNQNAVKFDQLEIL 151
Query: 261 ILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
+LDE D+ML+ + RD+ +I + P +Q ++FSAT S EIR + K +++P+E+ V
Sbjct: 152 VLDEADRMLD-MGFIRDIHKILKLLPEKRQNLLFSATFSTEIRELAKGLVNNPVEISVSP 210
Query: 321 EAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFP 380
A T ++Q + QV++F+++ L+T L+EQ
Sbjct: 211 -ANSTARTVEQCIYPADVKKKPDMLVKLVKEGNWQQVLVFMRTKHGANRLATYLNEQGLT 269
Query: 381 AVSIHRGMTQEERLKKYQEFK 401
A +IH +Q R + +FK
Sbjct: 270 AAAIHGNKSQGARTRALADFK 290
>SGD|S000003931 [details] [associations]
symbol:DRS1 "Nucleolar DEAD-box protein required for ribosome
assembly and function" species:4932 "Saccharomyces cerevisiae"
[GO:0000027 "ribosomal large subunit assembly" evidence=TAS]
[GO:0005730 "nucleolus" evidence=IEA;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0030687 "preribosome, large
subunit precursor" evidence=IDA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0006364 "rRNA processing" evidence=TAS]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=TAS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000003931 GO:GO:0005524 GO:GO:0005730
EMBL:BK006945 GO:GO:0003723 GO:GO:0030687 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0006364 EMBL:X91488
GO:GO:0004004 GO:GO:0000027 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00550000074997 HOGENOM:HOG000265456
KO:K13181 OrthoDB:EOG4B01XM EMBL:L00683 EMBL:Z73113 PIR:S64750
RefSeq:NP_013093.1 ProteinModelPortal:P32892 SMR:P32892
DIP:DIP-6471N IntAct:P32892 MINT:MINT-648259 STRING:P32892
PaxDb:P32892 PeptideAtlas:P32892 EnsemblFungi:YLL008W GeneID:850652
KEGG:sce:YLL008W CYGD:YLL008w OMA:RIRKRDH NextBio:966605
Genevestigator:P32892 GermOnline:YLL008W Uniprot:P32892
Length = 752
Score = 294 (108.6 bits), Expect = 2.7e-24, P = 2.7e-24
Identities = 73/266 (27%), Positives = 138/266 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVY---VLVMCHTRELAFQISKEYER 202
A+LG DI+ A +G GKTA F++ +++L + + V+V+ TRELA Q++ ++
Sbjct: 265 ALLGKDIIAGAVTGSGKTAAFMIPIIERLLYKPAKIASTRVIVLLPTRELAIQVADVGKQ 324
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFI 261
++++S I G+ GGL +++ E+ LK+ P IV+ TPGR + +RN N+ ++ +
Sbjct: 325 IARFVSGITFGLAVGGLNLRQQEQMLKSR-PDIVIATPGRFIDHIRNSASFNVDSVEILV 383
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
+DE D+MLE+ + ++ EI P +Q ++FSAT++ +I+ + + P+ + +D
Sbjct: 384 MDEADRMLEE-GFQDELNEIMGLLPSNRQNLLFSATMNSKIKSLVSLSLKKPVRIMIDPP 442
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFN-----QVVIFVKSVTRCIALSTLLSE 376
K L Q +V + + + ++V+FV L ++
Sbjct: 443 KKAATK-LTQEFVRIRKRDHLKPALLFNLIRKLDPTGQKRIVVFVARKETAHRLRIIMGL 501
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKD 402
+H +TQE+RL +FK+
Sbjct: 502 LGMSVGELHGSLTQEQRLDSVNKFKN 527
Score = 128 (50.1 bits), Expect = 8.0e-05, P = 8.0e-05
Identities = 27/79 (34%), Positives = 44/79 (55%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGM 160
+L+ T+L RG+DI ++ +V NYDMP+ + YLHRV R R G + G + +S
Sbjct: 532 VLICTDLASRGLDIPKIEVVINYDMPKSYEIYLHRVGRTARAGRE---GRSVTFVGESSQ 588
Query: 161 GKTAVFVLATLQQLETTDS 179
++ V A ++ +E S
Sbjct: 589 DRS--IVRAAIKSVEENKS 605
>POMBASE|SPAC30D11.03 [details] [associations]
symbol:ddx27 "ATP-dependent RNA helicase Ddx27/Drs1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003723
"RNA binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISO] [GO:0005524 "ATP binding" evidence=ISM]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=ISO;IDA] [GO:0006364 "rRNA processing" evidence=ISO]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC30D11.03 GO:GO:0005524 EMBL:CU329670
GO:GO:0005730 GenomeReviews:CU329670_GR GO:GO:0003723
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000265456 KO:K13181 OrthoDB:EOG4B01XM PIR:S62561
RefSeq:NP_593214.1 ProteinModelPortal:Q09903 STRING:Q09903
EnsemblFungi:SPAC30D11.03.1 GeneID:2543155 KEGG:spo:SPAC30D11.03
NextBio:20804181 Uniprot:Q09903
Length = 754
Score = 294 (108.6 bits), Expect = 2.8e-24, P = 2.8e-24
Identities = 76/264 (28%), Positives = 142/264 (53%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV---YVLVMCHTRELAFQISKEYER 202
A+LG DI+ A +G GKTA F++ L++L V VL++C TRELA Q +
Sbjct: 293 ALLGKDIVGAAVTGSGKTAAFIVPILERLLYRPKKVPTTRVLILCPTRELAMQCHSVATK 352
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFI 261
+ + ++I V + GGL ++ E+ L+ P IV+ TPGR + +RN + + ++ +
Sbjct: 353 IASF-TDIMVCLCIGGLSLKLQEQELRKR-PDIVIATPGRFIDHMRNSQGFTVENIEIMV 410
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
+DE D+MLE ++ EI ++ P ++Q M+FSAT++ ++ + + ++ P+ V+VD++
Sbjct: 411 MDEADRMLED-GFADELNEIIQACPKSRQTMLFSATMTDKVDDLIRLSLNRPVRVFVDNK 469
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--FNQ-VVIFVKSVTRCIALSTLLSEQN 378
K T L Q +V + + F++ +IF +S + + +
Sbjct: 470 -KTTAKLLTQEFVRVRPQRELLRPAMLIYLCKELFHRRTIIFFRSKAFAHKMRVIFGLLS 528
Query: 379 FPAVSIHRGMTQEERLKKYQEFKD 402
A IH ++QE+R++ ++F+D
Sbjct: 529 LNATEIHGSLSQEQRVRALEDFRD 552
>UNIPROTKB|F6S2B7 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00795722 SMR:F6S2B7 Ensembl:ENST00000415036
Ensembl:ENST00000417491 Ensembl:ENST00000419020
Ensembl:ENST00000439857 Ensembl:ENST00000449010
Ensembl:ENST00000452163 Ensembl:ENST00000452414 Uniprot:F6S2B7
Length = 132
Score = 160 (61.4 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
Score = 146 (56.5 bits), Expect = 3.1e-24, Sum P(2) = 3.1e-24
Identities = 29/37 (78%), Positives = 32/37 (86%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV 181
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE V
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLEPVTGQV 114
>UNIPROTKB|E7EMX2 [details] [associations]
symbol:DDX39B "Spliceosome RNA helicase DDX39B"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 EMBL:AL662847
EMBL:AL662801 EMBL:CR753892 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 EMBL:BX001040 EMBL:BX248516 EMBL:BX927320
EMBL:CR753820 EMBL:CR753864 HGNC:HGNC:13917 ChiTaRS:DDX39B
EMBL:CR942185 IPI:IPI00908716 SMR:E7EMX2 Ensembl:ENST00000449074
Ensembl:ENST00000547678 Ensembl:ENST00000548208
Ensembl:ENST00000548952 Ensembl:ENST00000549452
Ensembl:ENST00000551815 Ensembl:ENST00000552191 Uniprot:E7EMX2
Length = 139
Score = 160 (61.4 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 34/41 (82%), Positives = 38/41 (92%)
Query: 58 DGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DGA +A AK K+VKG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 25 DGA-EAPAK-KDVKGSYVSIHSSGFRDFLLKPELLRAIVDC 63
Score = 144 (55.7 bits), Expect = 5.1e-24, Sum P(2) = 5.1e-24
Identities = 28/31 (90%), Positives = 31/31 (100%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLE 175
+A+LGMD+LCQAKSGMGKTAVFVLATLQQLE
Sbjct: 78 QAILGMDVLCQAKSGMGKTAVFVLATLQQLE 108
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 285 (105.4 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 79/292 (27%), Positives = 142/292 (48%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSN------VYVLVMCHTRELAFQISKEYERFS 204
D++ A++G GKTA F L LQ L + + + LV+ TRELA Q+ + + +++
Sbjct: 40 DVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYA 99
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
K ++I+VG+ +GG+ I+ + +++ TPGR+L +R LNL+ L + DE
Sbjct: 100 KG-TDIRVGIAYGGVSIEAQQAVFNA-GIDVLIATPGRLLDHLRQGALNLNQLNTLVFDE 157
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML+ + ++Q + + P +Q ++FSATL I K + DP + V +
Sbjct: 158 ADRMLD-MGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA-KPNT 215
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T ++Q + QV+IF ++ L+ L++ S
Sbjct: 216 TAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSF 275
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELP 436
H ++Q R K QEFK +GL + + A+ L+ + ++ ++ ELP
Sbjct: 276 HGDLSQGAREKVLQEFK---QGLVQVLVATDVAARGLDIAELQYVINF-ELP 323
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 34/98 (34%), Positives = 55/98 (56%)
Query: 62 DALAKQKEVKG-AYVSIH---SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D L Q G A S H S G R+ +L+ E + +V ++LVAT++ RG+DI +
Sbjct: 259 DKLTAQLNKLGVATQSFHGDLSQGAREKVLQ-EFKQGLV---QVLVATDVAARGLDIAEL 314
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
V N+++P ++ Y+HR+ R GR G+ A L + + Q
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGS-AGLAITLFSQ 351
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 285 (105.4 bits), Expect = 5.2e-24, P = 5.2e-24
Identities = 79/292 (27%), Positives = 142/292 (48%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQLETTDSN------VYVLVMCHTRELAFQISKEYERFS 204
D++ A++G GKTA F L LQ L + + + LV+ TRELA Q+ + + +++
Sbjct: 40 DVMAGAQTGTGKTAAFALPILQLLMADNQSDHAAKAIRALVLVPTRELALQVQQSFVKYA 99
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
K ++I+VG+ +GG+ I+ + +++ TPGR+L +R LNL+ L + DE
Sbjct: 100 KG-TDIRVGIAYGGVSIEAQQAVFNA-GIDVLIATPGRLLDHLRQGALNLNQLNTLVFDE 157
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D+ML+ + ++Q + + P +Q ++FSATL I K + DP + V +
Sbjct: 158 ADRMLD-MGFMDEIQAVLKQVPAQRQTLLFSATLDDSIFSFSKNLLRDPKRIEVA-KPNT 215
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T ++Q + QV+IF ++ L+ L++ S
Sbjct: 216 TAAQIEQRVYAIDSDRKTEFVSHLVRSKNWQQVLIFSRTKQGVDKLTAQLNKLGVATQSF 275
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELP 436
H ++Q R K QEFK +GL + + A+ L+ + ++ ++ ELP
Sbjct: 276 HGDLSQGAREKVLQEFK---QGLVQVLVATDVAARGLDIAELQYVINF-ELP 323
Score = 120 (47.3 bits), Expect = 0.00025, P = 0.00025
Identities = 34/98 (34%), Positives = 55/98 (56%)
Query: 62 DALAKQKEVKG-AYVSIH---SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERV 117
D L Q G A S H S G R+ +L+ E + +V ++LVAT++ RG+DI +
Sbjct: 259 DKLTAQLNKLGVATQSFHGDLSQGAREKVLQ-EFKQGLV---QVLVATDVAARGLDIAEL 314
Query: 118 NIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQ 155
V N+++P ++ Y+HR+ R GR G+ A L + + Q
Sbjct: 315 QYVINFELPFIAEDYIHRIGRTGRAGS-AGLAITLFSQ 351
>DICTYBASE|DDB_G0282741 [details] [associations]
symbol:ddx18 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0042254 "ribosome biogenesis"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0006364 "rRNA processing" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0282741 GO:GO:0005524
GO:GO:0005730 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HSSP:Q58083 InterPro:IPR025313 Pfam:PF13959
RefSeq:XP_640236.1 ProteinModelPortal:Q54S03 STRING:Q54S03
EnsemblProtists:DDB0234194 GeneID:8623775 KEGG:ddi:DDB_G0282741
KO:K13179 OMA:KDGYRSY Uniprot:Q54S03
Length = 602
Score = 291 (107.5 bits), Expect = 6.0e-24, P = 6.0e-24
Identities = 77/268 (28%), Positives = 140/268 (52%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTD----SNVYVLVMCHTRELAFQISKEYERFS 204
G D+L A++G GKT F++ ++ L ++ + V+++ TRELA QI
Sbjct: 156 GKDLLGAARTGSGKTLAFLIPAIEVLVKSNFKPRNGTGVIIISPTRELALQIYGVARELM 215
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSL-LKHFILD 263
KY + G+ GG + +EE L+ ++V TPGR+L ++N K ++ LK I+D
Sbjct: 216 KYHTQTH-GIVIGGASKKPEEERLEK-GVNLLVATPGRLLDHLQNTKGFITKNLKCLIID 273
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHD-PMEVYVDDEA 322
E D++LE + ++ +I + P T+Q M+FSAT ++++ + K +++ P+ V VDDE
Sbjct: 274 EADRILE-VGFEEEMHQIIKKVPKTRQTMLFSATQTRKVDDIAKVSLNNSPVYVGVDDER 332
Query: 323 KL-TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
++ T+ GL+Q YV ++++F+ S + LL+ + P
Sbjct: 333 EISTVEGLEQGYVVCPSERRFLLLYTFLKKNLSKKIIVFLSSCNAVKYTAELLNYIDIPV 392
Query: 382 VSIHRGMTQEERLKKYQEFKDFHKGLAI 409
+ +H Q++R + EF + KG+ I
Sbjct: 393 LELHGRQKQQKRTNTFYEFVNAEKGILI 420
>DICTYBASE|DDB_G0270396 [details] [associations]
symbol:ddx49 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0270396 GO:GO:0005524 EMBL:AAFI02000005
GenomeReviews:CM000150_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 KO:K14778 OMA:FRNLCAI
RefSeq:XP_646762.1 HSSP:P60842 ProteinModelPortal:Q55BR9
PRIDE:Q55BR9 EnsemblProtists:DDB0234206 GeneID:8617735
KEGG:ddi:DDB_G0270396 ProtClustDB:CLSZ2846935 Uniprot:Q55BR9
Length = 508
Score = 289 (106.8 bits), Expect = 7.3e-24, P = 7.3e-24
Identities = 73/257 (28%), Positives = 127/257 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DI+ AK+G GKTA F + L QL V+ +++ TRELA QI +++ M
Sbjct: 41 GRDIIASAKTGSGKTASFAIPILNQLSEDPYGVFAVILTPTRELAVQIGEQFNAIGAPM- 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFILDECDK 267
N+ V GG+ + + P I+V TPGR+ + + N K+ L K +LDE D+
Sbjct: 100 NVNCSVVIGGID-NVTQALILDKRPHIIVATPGRLASHLNNGLKIALKFCKFLVLDEADR 158
Query: 268 ML-EQLEMRRDVQEIFRS--SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
+L E E+ ++ I P +Q ++FSAT++K + + ++ P ++ D+
Sbjct: 159 LLGEDFEL--EIASILEHLPPPEKRQTLLFSATMTKNLTKLDSIALNKPF-IFEDNSKYD 215
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ L+Q Y+ E + ++FV + A+ +L++ + P+VS+
Sbjct: 216 TVDTLKQEYIYMPAPTKDCYLVYILKKHEGSSAIVFVNNCYAVEAVKGMLNKLDIPSVSL 275
Query: 385 HRGMTQEERLKKYQEFK 401
H + Q+ RL + FK
Sbjct: 276 HSFLDQKSRLAALKTFK 292
Score = 117 (46.2 bits), Expect = 0.00076, P = 0.00076
Identities = 22/44 (50%), Positives = 29/44 (65%)
Query: 100 RILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
++LVAT++ RG+DI V IV NY + S Y+HRV R RFG
Sbjct: 297 KVLVATDVASRGLDIPDVQIVINYKLSNSSKDYIHRVGRTARFG 340
>UNIPROTKB|E2RBM7 [details] [associations]
symbol:DDX49 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195 KO:K14778
OMA:EVRTVEQ GeneTree:ENSGT00670000098028 CTD:54555
EMBL:AAEX03012274 RefSeq:XP_541930.1 ProteinModelPortal:E2RBM7
Ensembl:ENSCAFT00000023054 GeneID:484814 KEGG:cfa:484814
NextBio:20858886 Uniprot:E2RBM7
Length = 488
Score = 288 (106.4 bits), Expect = 8.4e-24, P = 8.4e-24
Identities = 78/265 (29%), Positives = 135/265 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D L AK+G GKTA FVL LQ+L ++ LV+ TRELA+QI++++
Sbjct: 35 AILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +V+ TPGR+ +R+ ++ ++ ++D
Sbjct: 95 KPLG-LKDCIIVGGMDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + D++ I + P +Q ++FSATL+ ++ + + P + + +
Sbjct: 153 EADRLLEQGCTDFTVDLEAILAAVPTRRQTLLFSATLTDTLKELQGLATNQPF--FWEAQ 210
Query: 322 AKL-TLHGLQQHYVXX----XXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
A + T+ L Q Y+ D E ++IF + C L +L +
Sbjct: 211 APVRTVEQLDQRYLLVPEKVKDAYLVHLIQNFQDEHEDWSIIIFTNTCKTCQILCMMLRK 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
NFP V++H M Q+ER +FK
Sbjct: 271 FNFPTVALHSMMKQKERFAALAKFK 295
>ASPGD|ASPL0000013201 [details] [associations]
symbol:AN4233 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005829 "cytosol"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005634 GO:GO:0003723 EMBL:BN001302
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0006364
GO:GO:0008026 EMBL:AACD01000068 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268802 KO:K14777 OMA:IFIPSKF
RefSeq:XP_661837.1 ProteinModelPortal:Q5B5E7 SMR:Q5B5E7
STRING:Q5B5E7 EnsemblFungi:CADANIAT00004427 GeneID:2873652
KEGG:ani:AN4233.2 OrthoDB:EOG4ZPJ3P Uniprot:Q5B5E7
Length = 465
Score = 287 (106.1 bits), Expect = 9.0e-24, P = 9.0e-24
Identities = 73/265 (27%), Positives = 131/265 (49%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A+ G D++ A++G GKTA F L LQ L ++ LV+ TRELA+QIS+ +E
Sbjct: 80 ALEGRDVIGLAETGSGKTAAFALPMLQALMEAPQTLFGLVLAPTRELAYQISQAFETLGS 139
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ ++ V GG+ + L P I+V TPGR+L + N K +L LK+ +DE
Sbjct: 140 TIG-VRCAVIVGGMDMVAQSIALGK-KPHIIVATPGRLLDHLENTKGFSLRNLKYLAIDE 197
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
D++L+ ++ + +I R P T+ +FSAT+S ++ + + + +P+ V V + +
Sbjct: 198 ADRLLD-MDFGESLDKIIRILPRTRHTYLFSATMSTKVESLQRASLSNPVRVSVSSKYQ- 255
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ LQ Y+ + +IF +V ++ +L F A+ +
Sbjct: 256 TVSTLQSSYICIPHKHKNLYLVYLLNEFAGQSAIIFTTTVHETQRVAFMLRALGFGAIPL 315
Query: 385 HRGMTQEERLKKYQEFKDFHKGLAI 409
H ++Q RL +F+ + + +
Sbjct: 316 HGQLSQSARLGALGKFRSRSRDILV 340
Score = 139 (54.0 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 26/47 (55%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI V++VFN+D+P DS TY+HRV R R G V
Sbjct: 338 ILVATDVAARGLDIPSVDVVFNFDLPMDSKTYIHRVGRTARAGKSGV 384
>WB|WBGene00022148 [details] [associations]
symbol:Y71G12B.8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0040010 "positive regulation of growth rate"
evidence=IMP] [GO:0040007 "growth" evidence=IMP] [GO:0002119
"nematode larval development" evidence=IMP] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0040007 GO:GO:0040010 GO:GO:0002119 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:FO080942 RefSeq:NP_490891.2
ProteinModelPortal:Q95XM9 SMR:Q95XM9 PaxDb:Q95XM9
EnsemblMetazoa:Y71G12B.8 GeneID:171743 KEGG:cel:CELE_Y71G12B.8
UCSC:Y71G12B.8 CTD:171743 WormBase:Y71G12B.8 InParanoid:Q95XM9
OMA:ETDREAM NextBio:872509 Uniprot:Q95XM9
Length = 739
Score = 290 (107.1 bits), Expect = 1.4e-23, P = 1.4e-23
Identities = 74/263 (28%), Positives = 135/263 (51%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQL---ETTDSNVYVLVMCHTRELAFQISKEYER 202
A+ G DI A +G GKTA FVL L+++ S VLV+ TRELA Q+ + + +
Sbjct: 182 ALTGKDICACAATGTGKTAAFVLPILERMIYRPKGASCTRVLVLVPTRELAIQVFQVFRK 241
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFI 261
S ++ ++V + GGL ++ E L++ P +VV TPGR++ + N NLS ++ +
Sbjct: 242 LSTFIQ-LEVCLCAGGLDLKAQEAALRS-GPDVVVATPGRLIDHLHNSPSFNLSNIEVLV 299
Query: 262 LDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
LDE D+MLE+ R + E+ R +Q ++FSAT+++EI + + P+++++++
Sbjct: 300 LDEADRMLEEA-FRDQMNELIRLCAQNRQTLLFSATMTEEIDELASMSLQKPVKIFINEN 358
Query: 322 AKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--FN-QVVIFVKSVTRCIALSTLLSEQN 378
L L+Q ++ ++ F ++FV++ C + LL
Sbjct: 359 TDTALK-LRQEFIRIRAGRETDREAMVAALVTRTFQTNTIVFVRTKKDCQRMQILLGLLG 417
Query: 379 FPAVSIHRGMTQEERLKKYQEFK 401
+ +TQ +R++ +FK
Sbjct: 418 IKVGQMQSSLTQGQRIESLSKFK 440
>TIGR_CMR|CPS_2658 [details] [associations]
symbol:CPS_2658 "ATP-dependent RNA helicase, DEAD box
family" species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 RefSeq:YP_269372.1
ProteinModelPortal:Q480Z7 GeneID:3520428 KEGG:cps:CPS_2658
PATRIC:21468367 OMA:ERNFDSS BioCyc:CPSY167879:GI48-2720-MONOMER
Uniprot:Q480Z7
Length = 399
Score = 281 (104.0 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 78/271 (28%), Positives = 133/271 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQ-----LETTDSNVYVLVMCHTRELAFQISKEYERF 203
G D+L A++G GKTA F L + + ++ + L++ TRELA QI + + +
Sbjct: 39 GNDLLGIAQTGTGKTAAFSLPIINKFGRNKIDIKAKSTRSLILTPTRELASQIMQNIDDY 98
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILD 263
S + +K V +GG+ Q + ++ I+V TPGR+L L+ +N L+ F+LD
Sbjct: 99 SDGLG-LKTKVVYGGVGRQAQVDSIEL-GLDILVATPGRLLDLIETGDINFKALEVFVLD 156
Query: 264 ECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAK 323
E D ML+ + +DVQ I P ++Q ++FSAT+ EI + + + DP ++ + E
Sbjct: 157 EADTMLD-MGFFKDVQSIISKLPKSRQTLLFSATMPAEIEILAEAILTDPTKIQITAET- 214
Query: 324 LTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
+T+ + Q ++ +V+IF K+ + L + + A S
Sbjct: 215 VTIDLVNQSVYHLDKSNKVPLLFNILTKADYEKVLIFCKTKYGADIIVKALEKASITAAS 274
Query: 384 IHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+H G TQ R + Q FKD L + A+D
Sbjct: 275 LHSGKTQAVREEALQNFKD--STLRVLVATD 303
Score = 133 (51.9 bits), Expect = 8.7e-06, P = 8.7e-06
Identities = 31/87 (35%), Positives = 49/87 (56%)
Query: 59 GAGDALAKQKEVKG-AYVSIHSSGFRDFLLKPEILRAIVDCW-RILVATNLFGRGMDIER 116
GA D + K E S+HS + ++ E L+ D R+LVAT++ RG+D++
Sbjct: 257 GA-DIIVKALEKASITAASLHSG--KTQAVREEALQNFKDSTLRVLVATDVAARGIDVDN 313
Query: 117 VNIVFNYDMPEDSDTYLHRVARAGRFG 143
+ +V NY++PED Y+HR+ R R G
Sbjct: 314 ITLVINYNLPEDPRNYIHRIGRTARAG 340
>UNIPROTKB|Q9Y6V7 [details] [associations]
symbol:DDX49 "Probable ATP-dependent RNA helicase DDX49"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003723 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AC002985 KO:K14778 HOGENOM:HOG000268802 OMA:EVRTVEQ
HOVERGEN:HBG100512 EMBL:AK223294 EMBL:BC002674 IPI:IPI00003739
RefSeq:NP_061943.2 UniGene:Hs.143187 ProteinModelPortal:Q9Y6V7
SMR:Q9Y6V7 IntAct:Q9Y6V7 STRING:Q9Y6V7 PhosphoSite:Q9Y6V7
DMDM:74753527 PaxDb:Q9Y6V7 PRIDE:Q9Y6V7 DNASU:54555
Ensembl:ENST00000247003 GeneID:54555 KEGG:hsa:54555 UCSC:uc002nkq.2
CTD:54555 GeneCards:GC19P019030 HGNC:HGNC:18684 neXtProt:NX_Q9Y6V7
PharmGKB:PA134956171 InParanoid:Q9Y6V7 OrthoDB:EOG4C87SC
PhylomeDB:Q9Y6V7 GenomeRNAi:54555 NextBio:57032 ArrayExpress:Q9Y6V7
Bgee:Q9Y6V7 CleanEx:HS_DDX49 Genevestigator:Q9Y6V7
GermOnline:ENSG00000105671 Uniprot:Q9Y6V7
Length = 483
Score = 286 (105.7 bits), Expect = 1.7e-23, P = 1.7e-23
Identities = 78/265 (29%), Positives = 135/265 (50%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
A+L G D L AK+G GKTA FVL LQ+L ++ LV+ TRELA+QI++++
Sbjct: 35 AILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYGIFCLVLTPTRELAYQIAEQFRVLG 94
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILD 263
K + +K + GG+ + L + P +V+ TPGR+ +R+ ++ ++ ++D
Sbjct: 95 KPLG-LKDCIIVGGMDMVAQALEL-SRKPHVVIATPGRLADHLRSSNTFSIKKIRFLVMD 152
Query: 264 ECDKMLEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDE 321
E D++LEQ + D++ I + P +Q ++FSATL+ +R + + P + + +
Sbjct: 153 EADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPF--FWEAQ 210
Query: 322 AKL-TLHGLQQHYVXX----XXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
A + T+ L Q Y+ D E ++IF + C L +L +
Sbjct: 211 APVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRK 270
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFK 401
+FP V++H M Q+ER +FK
Sbjct: 271 FSFPTVALHSMMKQKERFAALAKFK 295
>TIGR_CMR|BA_4509 [details] [associations]
symbol:BA_4509 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008152
"metabolic process" evidence=ISS] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268806 OMA:YAHVEPK HSSP:P10081
RefSeq:NP_846734.1 RefSeq:YP_021153.1 RefSeq:YP_030436.1
ProteinModelPortal:Q81LV0 SMR:Q81LV0
EnsemblBacteria:EBBACT00000013143 EnsemblBacteria:EBBACT00000016547
EnsemblBacteria:EBBACT00000022918 GeneID:1088235 GeneID:2818505
GeneID:2850064 KEGG:ban:BA_4509 KEGG:bar:GBAA_4509 KEGG:bat:BAS4187
ProtClustDB:CLSK887589 BioCyc:BANT260799:GJAJ-4244-MONOMER
BioCyc:BANT261594:GJ7F-4386-MONOMER Uniprot:Q81LV0
Length = 436
Score = 283 (104.7 bits), Expect = 2.4e-23, P = 2.4e-23
Identities = 86/307 (28%), Positives = 152/307 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G+ ++ Q+++G GKT ++L TL ++ V +++ TRELA QI +E + +K+ +
Sbjct: 41 GVSVIGQSQTGSGKTHAYLLPTLNRINPGREEVQLVITAPTRELAQQIYEEIVKLTKFCA 100
Query: 209 N---IKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
I GG Q+ E LK P IVVGTPGRI LV + L + I+DE
Sbjct: 101 EDQMITARCLIGGTDKQRSIEKLKKQ-PHIVVGTPGRIKDLVEEQALFVHKANTIIVDEA 159
Query: 266 DKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLT 325
D ML+ + DV +I P Q+++FSAT+ ++++P KK+M +P ++++ K
Sbjct: 160 DLMLD-MGFIHDVDKIAARMPKNLQMLVFSATIPQKLKPFLKKYMENPEHIHINP--KQV 216
Query: 326 LHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIA--LSTLLSEQNFPAVS 383
G +HY+ +L+F + V + T+ +A ++ L E+
Sbjct: 217 AAGNIEHYLVPSKHRNKIDLVNKM-LLQFKPYLAVVFTNTKKMADQVADGLMERGLKVGR 275
Query: 384 IHRGMTQEERLKKYQEFKD--FHKGLAITFASDENDAKILNNVQDRFDVSISELPDEIDL 441
IH ++ +R K ++ +D F +A A+ D + +++V + ELP ++D
Sbjct: 276 IHGDLSPRDRKKMMKQIRDLEFQYIVATDLAARGIDIEGISHVINY------ELPSDLDF 329
Query: 442 STYIEGR 448
+ GR
Sbjct: 330 FVHRVGR 336
Score = 121 (47.7 bits), Expect = 0.00022, P = 0.00022
Identities = 33/95 (34%), Positives = 53/95 (55%)
Query: 56 VADGAGDALAKQKEVKGAYVS-IHSS-GFRDFLLKPEILRAIVDC-WRILVATNLFGRGM 112
+AD D L + +G V IH RD + ++++ I D ++ +VAT+L RG+
Sbjct: 258 MADQVADGLME----RGLKVGRIHGDLSPRD---RKKMMKQIRDLEFQYIVATDLAARGI 310
Query: 113 DIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
DIE ++ V NY++P D D ++HRV R R G +
Sbjct: 311 DIEGISHVINYELPSDLDFFVHRVGRTARAGHSGI 345
>UNIPROTKB|Q4K4K3 [details] [associations]
symbol:dbpA "ATP-independent RNA helicase DbpA"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003724 "RNA
helicase activity" evidence=ISS] [GO:0042254 "ribosome biogenesis"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0042254 EMBL:CP000076 GenomeReviews:CP000076_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 GO:GO:0003724 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 OMA:THEKSTI RefSeq:YP_262830.1
ProteinModelPortal:Q4K4K3 STRING:Q4K4K3 GeneID:3480144
KEGG:pfl:PFL_5772 PATRIC:19881049
BioCyc:PFLU220664:GIX8-5812-MONOMER Uniprot:Q4K4K3
Length = 461
Score = 284 (105.0 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 65/168 (38%), Positives = 92/168 (54%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GMD++ QAK+G GKTA F + L + LV+C TRELA Q++KE R ++
Sbjct: 43 GMDLIAQAKTGSGKTAAFGIGLLNPINPRYFGCQALVICPTRELADQVAKEVRRLARAED 102
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIKV GG+ L+ H I+VGTPGRI +R L L L +LDE D+M
Sbjct: 103 NIKVLTLCGGVSFGPQIASLE-HGAHIIVGTPGRIQQHLRKGSLVLDGLNTLVLDEADRM 161
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
L+ + +++I +P +Q ++FSAT I+ + KFM DP V
Sbjct: 162 LD-MGFYDAIEDIIEKTPSRRQTLLFSATYPVGIKQLASKFMRDPQTV 208
Score = 118 (46.6 bits), Expect = 0.00051, P = 0.00051
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
+LVAT++ RG+DI+ +++V N ++ DS+ ++HRV R GR G K +
Sbjct: 297 VLVATDVAARGLDIDALDMVINVELARDSEIHIHRVGRTGRAGEKGI 343
>UNIPROTKB|P25888 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:83333
"Escherichia coli K-12" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0042255 "ribosome assembly" evidence=IGI]
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=IDA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003723
GO:GO:0005840 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0042255 GO:GO:0004004 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 EMBL:L02123 HOGENOM:HOG000268807 EMBL:X56307
PIR:E64816 RefSeq:NP_415318.1 RefSeq:YP_489070.1
ProteinModelPortal:P25888 SMR:P25888 DIP:DIP-10697N IntAct:P25888
MINT:MINT-1313387 PRIDE:P25888 EnsemblBacteria:EBESCT00000003075
EnsemblBacteria:EBESCT00000017437 GeneID:12930968 GeneID:945425
KEGG:ecj:Y75_p0770 KEGG:eco:b0797 PATRIC:32116795 EchoBASE:EB1217
EcoGene:EG11235 KO:K11927 OMA:HLIKQHN ProtClustDB:PRK10590
BioCyc:EcoCyc:EG11235-MONOMER BioCyc:ECOL316407:JW0781-MONOMER
Genevestigator:P25888 Uniprot:P25888
Length = 454
Score = 283 (104.7 bits), Expect = 3.2e-23, P = 3.2e-23
Identities = 79/264 (29%), Positives = 131/264 (49%)
Query: 146 AVL-GMDILCQAKSGMGKTAVFVLATLQQLETTDSN------VYVLVMCHTRELAFQISK 198
AVL G D++ A++G GKTA F L LQ L T + V L++ TRELA QI +
Sbjct: 34 AVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGE 93
Query: 199 EYERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLK 258
+SKY+ NI+ V FGG+ I L+ ++V TPGR+L L + L ++
Sbjct: 94 NVRDYSKYL-NIRSLVVFGGVSINPQMMKLRG-GVDVLVATPGRLLDLEHQNAVKLDQVE 151
Query: 259 HFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+LDE D+ML+ + D++ + P +Q ++FSAT S +I+ + +K +H+P+E+ V
Sbjct: 152 ILVLDEADRMLD-MGFIHDIRRVLTKLPAKRQNLLFSATFSDDIKALAEKLLHNPLEIEV 210
Query: 319 DDEAKLTLHGLQQ-HYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQ 377
+ Q H+V + QV++F ++ L+ L++
Sbjct: 211 ARRNTASDQVTQHVHFVDKKRKRELLSHMIGKG--NWQQVLVFTRTKHGANHLAEQLNKD 268
Query: 378 NFPAVSIHRGMTQEERLKKYQEFK 401
+ +IH +Q R + +FK
Sbjct: 269 GIRSAAIHGNKSQGARTRALADFK 292
>UNIPROTKB|Q83DM8 [details] [associations]
symbol:rhlE "ATP-dependent RNA helicase" species:227377
"Coxiella burnetii RSA 493" [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:AE016828 GenomeReviews:AE016828_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927 OMA:HLIKQHN
RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8 GeneID:1208557
KEGG:cbu:CBU_0670 PATRIC:17930019 ProtClustDB:CLSK914228
BioCyc:CBUR227377:GJ7S-666-MONOMER Uniprot:Q83DM8
Length = 420
Score = 281 (104.0 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 78/260 (30%), Positives = 127/260 (48%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQL--------ETTDSNVYVLVMCHTRELAFQISKEYER 202
D++ A++G GKTA F L LQ+L + + L++ TRELA Q+ +
Sbjct: 49 DVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRA 108
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
+ KY+ +K V GG+ I+ +L+ I+V TPGR+L LV LNLS ++ F+L
Sbjct: 109 YGKYLP-LKATVVHGGVSIKPQINHLR-RGVDILVATPGRLLDLVNQGVLNLSRVEFFVL 166
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D+ML+ + D++ I + P ++Q ++FSAT SKEI+ + K +H P + V
Sbjct: 167 DEADRMLD-MGFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEV--AR 223
Query: 323 KLTLHGLQQHYVX-XXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+ T H V + QV++F ++ LS L +
Sbjct: 224 RNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSS 283
Query: 382 VSIHRGMTQEERLKKYQEFK 401
+IH +Q R++ +FK
Sbjct: 284 AAIHGNKSQAARMRALTQFK 303
>TIGR_CMR|CBU_0670 [details] [associations]
symbol:CBU_0670 "ATP-dependent RNA helicase RhlE,
putative" species:227377 "Coxiella burnetii RSA 493" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE016828 GenomeReviews:AE016828_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K11927
OMA:HLIKQHN RefSeq:NP_819700.2 ProteinModelPortal:Q83DM8
GeneID:1208557 KEGG:cbu:CBU_0670 PATRIC:17930019
ProtClustDB:CLSK914228 BioCyc:CBUR227377:GJ7S-666-MONOMER
Uniprot:Q83DM8
Length = 420
Score = 281 (104.0 bits), Expect = 3.3e-23, P = 3.3e-23
Identities = 78/260 (30%), Positives = 127/260 (48%)
Query: 151 DILCQAKSGMGKTAVFVLATLQQL--------ETTDSNVYVLVMCHTRELAFQISKEYER 202
D++ A++G GKTA F L LQ+L + + L++ TRELA Q+ +
Sbjct: 49 DVMVTAQTGTGKTAGFTLPLLQRLFVSRPPLQRSAKPVIRALILTPTRELAVQVFECVRA 108
Query: 203 FSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
+ KY+ +K V GG+ I+ +L+ I+V TPGR+L LV LNLS ++ F+L
Sbjct: 109 YGKYLP-LKATVVHGGVSIKPQINHLR-RGVDILVATPGRLLDLVNQGVLNLSRVEFFVL 166
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D+ML+ + D++ I + P ++Q ++FSAT SKEI+ + K +H P + V
Sbjct: 167 DEADRMLD-MGFLPDIRRILKLLPESRQNLLFSATFSKEIKELTDKLLHSPALIEV--AR 223
Query: 323 KLTLHGLQQHYVX-XXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+ T H V + QV++F ++ LS L +
Sbjct: 224 RNTAAARITHVVHPVDRQRKRELLSFMIGSKNWRQVLVFTRTKHGANRLSQQLESDGLSS 283
Query: 382 VSIHRGMTQEERLKKYQEFK 401
+IH +Q R++ +FK
Sbjct: 284 AAIHGNKSQAARMRALTQFK 303
>UNIPROTKB|Q485I3 [details] [associations]
symbol:dbpA "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:CP000083 GenomeReviews:CP000083_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 283 (104.7 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 77/267 (28%), Positives = 128/267 (47%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ +AK+G GKTA F LA L +LE + +V+C TRELA Q++KE + ++ +
Sbjct: 47 GKDVIGEAKTGSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIH 106
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIK+ GG P L+ H ++VGTPGR+ V L L L +LDE D+M
Sbjct: 107 NIKILTLCGGTPFGPQIGSLE-HGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM 165
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV-DDEAKLTLH 327
LE + + + I +P +Q ++FSAT +I+ + + M DP+ V + E + T+
Sbjct: 166 LE-MGFQAALDNIVGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTIS 224
Query: 328 GLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
Q+ + + IF + ++ L F +++H
Sbjct: 225 --QKFFKVGNDDDRLDALRLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGD 282
Query: 388 MTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +R + F + K +I A+D
Sbjct: 283 LEQRDRDQTLLRFAN--KSASILVATD 307
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI+ +++V NY + DS+ ++HR+ R GR G+ +
Sbjct: 302 ILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGI 348
>TIGR_CMR|CPS_1540 [details] [associations]
symbol:CPS_1540 "ATP-dependent RNA helicase DbpA"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0008186 "RNA-dependent ATPase
activity" evidence=ISS] [GO:0019843 "rRNA binding" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 EMBL:CP000083
GenomeReviews:CP000083_GR InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 HOGENOM:HOG000268809 KO:K05591 ProtClustDB:PRK11776
InterPro:IPR005580 Pfam:PF03880 RefSeq:YP_268282.1
ProteinModelPortal:Q485I3 STRING:Q485I3 GeneID:3521612
KEGG:cps:CPS_1540 PATRIC:21466289 OMA:THEKSTI
BioCyc:CPSY167879:GI48-1621-MONOMER Uniprot:Q485I3
Length = 468
Score = 283 (104.7 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 77/267 (28%), Positives = 128/267 (47%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ +AK+G GKTA F LA L +LE + +V+C TRELA Q++KE + ++ +
Sbjct: 47 GKDVIGEAKTGSGKTAAFGLALLNKLEVKKFRIQSMVICPTRELADQVAKELRKLARGIH 106
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
NIK+ GG P L+ H ++VGTPGR+ V L L L +LDE D+M
Sbjct: 107 NIKILTLCGGTPFGPQIGSLE-HGAHVIVGTPGRLEEHVIKGTLQLDNLNLLVLDEADRM 165
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV-DDEAKLTLH 327
LE + + + I +P +Q ++FSAT +I+ + + M DP+ V + E + T+
Sbjct: 166 LE-MGFQAALDNIVGRTPLDRQTLLFSATFPDQIKSISESIMTDPVMVKIASSEDQSTIS 224
Query: 328 GLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
Q+ + + IF + ++ L F +++H
Sbjct: 225 --QKFFKVGNDDDRLDALRLLLLGNQVESTAIFCNTKKETQQVADALHFDGFSVLALHGD 282
Query: 388 MTQEERLKKYQEFKDFHKGLAITFASD 414
+ Q +R + F + K +I A+D
Sbjct: 283 LEQRDRDQTLLRFAN--KSASILVATD 307
Score = 119 (46.9 bits), Expect = 0.00040, P = 0.00040
Identities = 20/47 (42%), Positives = 34/47 (72%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
ILVAT++ RG+DI+ +++V NY + DS+ ++HR+ R GR G+ +
Sbjct: 302 ILVATDVAARGLDIDSLDLVINYHIARDSEVHVHRIGRTGRAGSTGI 348
>UNIPROTKB|K7EN25 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821
EMBL:AC008569 Ensembl:ENST00000592632 Uniprot:K7EN25
Length = 176
Score = 150 (57.9 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
Score = 146 (56.5 bits), Expect = 4.0e-23, Sum P(2) = 4.0e-23
Identities = 28/37 (75%), Positives = 33/37 (89%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNV 181
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E + V
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIEPVNGQV 113
>GENEDB_PFALCIPARUM|PFB0860c [details] [associations]
symbol:PFB0860c "RNA helicase, putative"
species:5833 "Plasmodium falciparum" [GO:0004004 "ATP-dependent RNA
helicase activity" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004004 EMBL:AE001362
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268802 HSSP:P10081
KO:K14777 PIR:C71604 RefSeq:XP_001349688.1
ProteinModelPortal:O96264 EnsemblProtists:PFB0860c:mRNA
GeneID:812770 KEGG:pfa:PFB0860c EuPathDB:PlasmoDB:PF3D7_0218400
OMA:KHRAKRV ProtClustDB:CLSZ2432676 Uniprot:O96264
Length = 562
Score = 284 (105.0 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 71/257 (27%), Positives = 122/257 (47%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A L DI+ +++G GKTA F++ LQ L+ + Y LV+ TREL QIS+ ++
Sbjct: 190 AFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGM 249
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ I + +GG+ I L P ++V TPGRIL + N K NL LK+ + DE
Sbjct: 250 NLL-INICTIYGGVDIVTQSLNL-AKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDE 307
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L Q + + ++ P + +FSAT++K + + K + +P++V V ++
Sbjct: 308 ADKLLSQ-DFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYS- 365
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ L + Y+ + ++IF + L+ ++ +
Sbjct: 366 TVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICL 425
Query: 385 HRGMTQEERLKKYQEFK 401
H +TQ +RL FK
Sbjct: 426 HGKLTQNQRLSSLNSFK 442
>UNIPROTKB|O96264 [details] [associations]
symbol:PFB0860c "DEAD/DEAH box helicase, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
EMBL:AE001362 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268802 HSSP:P10081 KO:K14777 PIR:C71604
RefSeq:XP_001349688.1 ProteinModelPortal:O96264
EnsemblProtists:PFB0860c:mRNA GeneID:812770 KEGG:pfa:PFB0860c
EuPathDB:PlasmoDB:PF3D7_0218400 OMA:KHRAKRV ProtClustDB:CLSZ2432676
Uniprot:O96264
Length = 562
Score = 284 (105.0 bits), Expect = 6.0e-23, P = 6.0e-23
Identities = 71/257 (27%), Positives = 122/257 (47%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
A L DI+ +++G GKTA F++ LQ L+ + Y LV+ TREL QIS+ ++
Sbjct: 190 AFLKKDIIGLSETGSGKTACFIIPILQDLKVNKQSFYALVISPTRELCIQISQNFQALGM 249
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKK-LNLSLLKHFILDE 264
+ I + +GG+ I L P ++V TPGRIL + N K NL LK+ + DE
Sbjct: 250 NLL-INICTIYGGVDIVTQSLNL-AKKPNVIVSTPGRILDHLNNTKGFNLKNLKYLVFDE 307
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKL 324
DK+L Q + + ++ P + +FSAT++K + + K + +P++V V ++
Sbjct: 308 ADKLLSQ-DFESSINKLLLILPPNRITFLFSATMTKNVAKLKKACLKNPVKVEVSNKYS- 365
Query: 325 TLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSI 384
T+ L + Y+ + ++IF + L+ ++ +
Sbjct: 366 TVSTLIETYIFLPLKYKYTYLSSLCFHYQTRNIIIFTNTCATAQKLNFFCRNLGLKSICL 425
Query: 385 HRGMTQEERLKKYQEFK 401
H +TQ +RL FK
Sbjct: 426 HGKLTQNQRLSSLNSFK 442
>UNIPROTKB|K7EL56 [details] [associations]
symbol:DDX39A "ATP-dependent RNA helicase DDX39A"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 InterPro:IPR014014 PROSITE:PS51195 HGNC:HGNC:17821
EMBL:AC008569 Ensembl:ENST00000591275 Uniprot:K7EL56
Length = 108
Score = 150 (57.9 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 27/32 (84%), Positives = 32/32 (100%)
Query: 67 QKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
+K++KG+YVSIHSSGFRDFLLKPE+LRAIVDC
Sbjct: 31 KKDIKGSYVSIHSSGFRDFLLKPELLRAIVDC 62
Score = 142 (55.0 bits), Expect = 1.0e-22, Sum P(2) = 1.0e-22
Identities = 27/31 (87%), Positives = 31/31 (100%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLE 175
+A+LGMD+LCQAKSGMGKTAVFVLATLQQ+E
Sbjct: 77 QAILGMDVLCQAKSGMGKTAVFVLATLQQIE 107
>UNIPROTKB|P54475 [details] [associations]
symbol:cshB "DEAD-box ATP-dependent RNA helicase CshB"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0003723 "RNA binding" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0005524 "ATP binding"
evidence=ISS] [GO:0009409 "response to cold" evidence=IGI]
[GO:0043590 "bacterial nucleoid" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0009409 GO:GO:0003723 EMBL:AL009126 GenomeReviews:AL009126_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 GO:GO:0043590
EMBL:D84432 PIR:D69954 RefSeq:NP_390393.1 ProteinModelPortal:P54475
SMR:P54475 IntAct:P54475 EnsemblBacteria:EBBACT00000001897
GeneID:937908 KEGG:bsu:BSU25140 PATRIC:18976864 GenoList:BSU25140
HOGENOM:HOG000268806 OMA:YAHVEPK ProtClustDB:CLSK2301471
BioCyc:BSUB:BSU25140-MONOMER Uniprot:P54475
Length = 438
Score = 277 (102.6 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 84/308 (27%), Positives = 152/308 (49%)
Query: 146 AVLGMD-ILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
AVL + ++ Q+++G GKT ++L L +++ V V++ TRELA QI +E + +
Sbjct: 37 AVLKKESVIGQSQTGTGKTHAYLLPLLNKIDPAKDVVQVVITAPTRELANQIYQEALKIT 96
Query: 205 KYM--SNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFIL 262
+ S I+ F GG QK + LK P +VVGTPGRI L++ + L++ + ++
Sbjct: 97 QGEEGSQIRSKCFIGGTDKQKSIDKLKIQ-PHLVVGTPGRIADLIKEQALSVHKAESLVI 155
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D ML+ + DV I P Q+++FSAT+ ++++P KK+M +P +V+ +
Sbjct: 156 DEADLMLD-MGFLADVDYIGSRMPEDLQMLVFSATIPEKLKPFLKKYMENPKYAHVEPK- 213
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
++T ++ + L ++F + ++ L+ +
Sbjct: 214 QVTAAKIEHILIPSKHRDKDKLLFDIMSHLNPYLGIVFANTKNTADHIAQYLTGKGMKIG 273
Query: 383 SIHRGMTQEERLKKYQEFKD--FHKGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
+H G+T ER K ++ D F +A A+ D K +++V + ELPD++D
Sbjct: 274 LLHGGLTPRERKKVMKQINDLEFTYIIATDLAARGIDIKGVSHVINY------ELPDDLD 327
Query: 441 LSTYIEGR 448
+ GR
Sbjct: 328 FYVHRVGR 335
Score = 126 (49.4 bits), Expect = 6.1e-05, P = 6.1e-05
Identities = 29/84 (34%), Positives = 49/84 (58%)
Query: 62 DALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC-WRILVATNLFGRGMDIERVNIV 120
D +A+ KG + + G K ++++ I D + ++AT+L RG+DI+ V+ V
Sbjct: 259 DHIAQYLTGKGMKIGLLHGGLTPRERK-KVMKQINDLEFTYIIATDLAARGIDIKGVSHV 317
Query: 121 FNYDMPEDSDTYLHRVARAGRFGT 144
NY++P+D D Y+HRV R R G+
Sbjct: 318 INYELPDDLDFYVHRVGRTARAGS 341
>UNIPROTKB|F1Q073 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 EMBL:AAEX03013992
Ensembl:ENSCAFT00000018089 Uniprot:F1Q073
Length = 767
Score = 283 (104.7 bits), Expect = 1.7e-22, P = 1.7e-22
Identities = 79/275 (28%), Positives = 141/275 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVY-VLVMCHTRELAFQISKEYERF 203
+LG DI A +G GKTA F L L++L + S V VLV+ TREL Q+ ++
Sbjct: 222 LLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQL 281
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN-KKLNLSLLKHFIL 262
+++ NI + GGL ++ E L+ P I++ TPGR++ + N +LS ++ IL
Sbjct: 282 AQFC-NITTCLAVGGLDVKSQEAALRAA-PDILIATPGRLIDHLHNCPSFHLSSIEVLIL 339
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D+ML++ ++EI R H +Q M+FSAT++ E++ + + +P+ ++V+
Sbjct: 340 DEADRMLDEY-FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNT 398
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--F-NQVVIFVKSVTRCIALSTLLSEQNF 379
+ L+Q +V +L F + V++F ++ + + LL
Sbjct: 399 DVAPF-LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGL 457
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+H ++Q +RL+ + FKD + + I A+D
Sbjct: 458 QVGELHGNLSQTQRLEALRRFKD--EQIDILVATD 490
>UNIPROTKB|J9P9C6 [details] [associations]
symbol:DDX27 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 InterPro:IPR014014 PROSITE:PS51195
GeneTree:ENSGT00550000074997 OMA:TRTFTDH EMBL:AAEX03013992
Ensembl:ENSCAFT00000046251 Uniprot:J9P9C6
Length = 788
Score = 283 (104.7 bits), Expect = 1.8e-22, P = 1.8e-22
Identities = 79/275 (28%), Positives = 141/275 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVY-VLVMCHTRELAFQISKEYERF 203
+LG DI A +G GKTA F L L++L + S V VLV+ TREL Q+ ++
Sbjct: 243 LLGKDICACAATGTGKTAAFALPVLERLIYKPRQSPVTRVLVLVPTRELGIQVHSVTKQL 302
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRN-KKLNLSLLKHFIL 262
+++ NI + GGL ++ E L+ P I++ TPGR++ + N +LS ++ IL
Sbjct: 303 AQFC-NITTCLAVGGLDVKSQEAALRAA-PDILIATPGRLIDHLHNCPSFHLSSIEVLIL 360
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D+ML++ ++EI R H +Q M+FSAT++ E++ + + +P+ ++V+
Sbjct: 361 DEADRMLDEY-FEEQMKEIIRMCSHHRQTMLFSATMTDEVKDLASVSLKNPVRIFVNSNT 419
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--F-NQVVIFVKSVTRCIALSTLLSEQNF 379
+ L+Q +V +L F + V++F ++ + + LL
Sbjct: 420 DVAPF-LRQEFVRIRPNREGDREAIVAALLTRTFTDHVMLFTQTKKQAHRMHILLGLMGL 478
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+H ++Q +RL+ + FKD + + I A+D
Sbjct: 479 QVGELHGNLSQTQRLEALRRFKD--EQIDILVATD 511
>UNIPROTKB|Q81JK1 [details] [associations]
symbol:BAS5307 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:1392 "Bacillus anthracis" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 278 (102.9 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 77/277 (27%), Positives = 128/277 (46%)
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191
Y H G A+ D++ ++++G GKTA F + + +E ++ LV+ TRE
Sbjct: 24 YEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRE 83
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPI--QKDEEYLKTHNPQIVVGTPGRILALVRN 249
LA Q+ ++ ++ IK +G P QK E KTH IVVGTPGR+L +
Sbjct: 84 LAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQKTH---IVVGTPGRVLDHIEK 139
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
L+L LK+ ++DE D+ML + V+ I P + M+FSATL +++ + + +
Sbjct: 140 GTLSLERLKYLVIDEADEMLN-MGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTY 198
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIA 369
M+ P + + A +T ++ + + +IF ++
Sbjct: 199 MNAPTHIEIK-AAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDH 257
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKG 406
+ L N+P IH GM QE+R + DF KG
Sbjct: 258 VYRQLDRVNYPCDKIHGGMVQEDR---FGVMDDFRKG 291
Score = 121 (47.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT--KAV 147
+R LVAT++ RG+DI+ + V NYD+P + ++Y+HR R GR G KA+
Sbjct: 293 FRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAI 343
Score = 41 (19.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI--RPVCKK 308
FI D+ LE++E ++P ++VM A ++I +P KK
Sbjct: 345 FITPYEDRFLEEIEAYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKK 395
>TIGR_CMR|BA_5703 [details] [associations]
symbol:BA_5703 "ATP-dependent RNA helicase, DEAD/DEAH box
family" species:198094 "Bacillus anthracis str. Ames" [GO:0008026
"ATP-dependent helicase activity" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:Q58083 HOGENOM:HOG000268809
InterPro:IPR005580 Pfam:PF03880 OMA:ENRFLEE RefSeq:NP_847849.1
RefSeq:YP_022388.1 RefSeq:YP_031544.1 ProteinModelPortal:Q81JK1
SMR:Q81JK1 IntAct:Q81JK1 DNASU:1085452
EnsemblBacteria:EBBACT00000008202 EnsemblBacteria:EBBACT00000014623
EnsemblBacteria:EBBACT00000021322 GeneID:1085452 GeneID:2819774
GeneID:2852974 KEGG:ban:BA_5703 KEGG:bar:GBAA_5703 KEGG:bat:BAS5307
ProtClustDB:CLSK883265 BioCyc:BANT260799:GJAJ-5380-MONOMER
BioCyc:BANT261594:GJ7F-5556-MONOMER Uniprot:Q81JK1
Length = 481
Score = 278 (102.9 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 77/277 (27%), Positives = 128/277 (46%)
Query: 132 YLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRE 191
Y H G A+ D++ ++++G GKTA F + + +E ++ LV+ TRE
Sbjct: 24 YEHPTEVQGEVIPVALQKKDLVVKSQTGSGKTASFGIPLCEMVEWEENKPQALVLTPTRE 83
Query: 192 LAFQISKEYERFSKYMSNIKVGVFFGGLPI--QKDEEYLKTHNPQIVVGTPGRILALVRN 249
LA Q+ ++ ++ IK +G P QK E KTH IVVGTPGR+L +
Sbjct: 84 LAVQVKEDITNIGRF-KRIKAAAIYGKSPFARQKLELKQKTH---IVVGTPGRVLDHIEK 139
Query: 250 KKLNLSLLKHFILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
L+L LK+ ++DE D+ML + V+ I P + M+FSATL +++ + + +
Sbjct: 140 GTLSLERLKYLVIDEADEMLN-MGFIDQVEAIIDELPTKRMTMLFSATLPEDVERLSRTY 198
Query: 310 MHDPMEVYVDDEAKLTLHGLQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIA 369
M+ P + + A +T ++ + + +IF ++
Sbjct: 199 MNAPTHIEIK-AAGITTDKIEHTLFEVREEEKLSLLKDVTTIENPDSCIIFCRTQENVDH 257
Query: 370 LSTLLSEQNFPAVSIHRGMTQEERLKKYQEFKDFHKG 406
+ L N+P IH GM QE+R + DF KG
Sbjct: 258 VYRQLDRVNYPCDKIHGGMVQEDR---FGVMDDFRKG 291
Score = 121 (47.7 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 23/51 (45%), Positives = 35/51 (68%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGT--KAV 147
+R LVAT++ RG+DI+ + V NYD+P + ++Y+HR R GR G KA+
Sbjct: 293 FRYLVATDVAARGIDIDNITHVINYDIPLEKESYVHRTGRTGRAGNSGKAI 343
Score = 41 (19.5 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 14/51 (27%), Positives = 24/51 (47%)
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEI--RPVCKK 308
FI D+ LE++E ++P ++VM A ++I +P KK
Sbjct: 345 FITPYEDRFLEEIEAYIGFAIPKANAPSKEEVMKGKAAFEEKIQAKPTIKK 395
>ZFIN|ZDB-GENE-031001-8 [details] [associations]
symbol:ddx27 "DEAD (Asp-Glu-Ala-Asp) box polypeptide
27" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-031001-8 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 CTD:55661 HOGENOM:HOG000265456
HOVERGEN:HBG106162 KO:K13181 EMBL:AY648729 IPI:IPI00501087
RefSeq:NP_001002869.1 UniGene:Dr.76523 ProteinModelPortal:Q6DRN0
PRIDE:Q6DRN0 GeneID:378844 KEGG:dre:378844 InParanoid:Q6DRN0
NextBio:20813841 ArrayExpress:Q6DRN0 Bgee:Q6DRN0 Uniprot:Q6DRN0
Length = 776
Score = 282 (104.3 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 76/275 (27%), Positives = 142/275 (51%)
Query: 147 VLGMDILCQAKSGMGKTAVFVLATLQQL--ETTDSNVY-VLVMCHTRELAFQISKEYERF 203
+LG DI A +G GKTA F+L L++L + ++ V VLV+ TREL Q+ +
Sbjct: 236 LLGKDICACAATGTGKTAAFMLPVLERLIYKPRETQVTRVLVLVPTRELGIQVHTVARQL 295
Query: 204 SKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNK-KLNLSLLKHFIL 262
+++ + I + GGL ++ E L+ P +++ TPGR++ + N LS ++ IL
Sbjct: 296 AQF-TTISTCLAVGGLDLKSQEAALRA-GPDVLIATPGRLIDHLHNTPSFELSQIEILIL 353
Query: 263 DECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEA 322
DE D+ML++ ++EI R + +Q M+FSAT+S+E++ + + P+ ++V+
Sbjct: 354 DEADRMLDEY-FEEQMKEIIRMCAYQRQTMLFSATMSEEVKDLASVSLKQPVRIFVNSNT 412
Query: 323 KLTLHGLQQHYVXXXXXXXXXXXXXXXDVLE--F-NQVVIFVKSVTRCIALSTLLSEQNF 379
+ + L+Q +V +L F + V++F ++ + + LL
Sbjct: 413 DVAPY-LRQEFVRIRPNKEGDREAIVAALLTRTFQDHVMLFTQTKKQAHRMHILLGLMGL 471
Query: 380 PAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASD 414
+H ++Q +RL+ + FKD + + I A+D
Sbjct: 472 KVGELHGNLSQTQRLESLRRFKD--EQIDILVATD 504
>UNIPROTKB|Q9KLE2 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000910 "cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent
RNA helicase activity" evidence=ISS] [GO:0016070 "RNA metabolic
process" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 281 (104.0 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 75/253 (29%), Positives = 124/253 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D L +A++G GKTA F L L +L + +VM TRELA Q++ E + + +
Sbjct: 63 GRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIK 122
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG I LK+ IVVGTPGR+ L+ +L+L FILDE D+M
Sbjct: 123 GLKVLEIYGGASILDQMRALKS-GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEM 181
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + DV I +P + Q ++FSAT+ ++ + ++F+ +P V V + T+
Sbjct: 182 LK-MGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ-TVAK 239
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y + E + ++FV++ L+ L + F A ++H +
Sbjct: 240 VEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDI 299
Query: 389 TQEERLKKYQEFK 401
Q R + K
Sbjct: 300 PQSLRERTVDHIK 312
Score = 137 (53.3 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
I + ++D ILVAT++ RG+D+ R+ V+NYD+P D ++Y+HR+ R GR G K
Sbjct: 311 IKQGVID---ILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRK 362
>TIGR_CMR|VC_A0804 [details] [associations]
symbol:VC_A0804 "ATP-dependent RNA helicase DeaD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000910
"cytokinesis" evidence=ISS] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] [GO:0016070 "RNA metabolic process"
evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
GO:GO:0000910 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 KO:K05592 InterPro:IPR005580
Pfam:PF03880 HSSP:P10081 OMA:ILFMTPR PIR:C82415 RefSeq:NP_233190.1
ProteinModelPortal:Q9KLE2 DNASU:2612819 GeneID:2612819
KEGG:vch:VCA0804 PATRIC:20086156 ProtClustDB:CLSK789062
Uniprot:Q9KLE2
Length = 663
Score = 281 (104.0 bits), Expect = 2.4e-22, P = 2.4e-22
Identities = 75/253 (29%), Positives = 124/253 (49%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D L +A++G GKTA F L L +L + +VM TRELA Q++ E + + +
Sbjct: 63 GRDALGKAQTGTGKTAAFSLPLLNKLNLSQYKPQAIVMAPTRELAIQVAAEIKNLGQNIK 122
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+KV +GG I LK+ IVVGTPGR+ L+ +L+L FILDE D+M
Sbjct: 123 GLKVLEIYGGASILDQMRALKS-GAHIVVGTPGRVKDLITRDRLHLDECHTFILDEADEM 181
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + DV I +P + Q ++FSAT+ ++ + ++F+ +P V V + T+
Sbjct: 182 LK-MGFVDDVTWIMEQAPESAQRVLFSATMPPMVKEIVERFLRNPECVDVAGSNQ-TVAK 239
Query: 329 LQQHYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q Y + E + ++FV++ L+ L + F A ++H +
Sbjct: 240 VEQQYWVVKGVEKDEAMARLLETEETDASIVFVRTRQDTERLADWLCARGFKAAALHGDI 299
Query: 389 TQEERLKKYQEFK 401
Q R + K
Sbjct: 300 PQSLRERTVDHIK 312
Score = 137 (53.3 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 25/55 (45%), Positives = 39/55 (70%)
Query: 91 ILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
I + ++D ILVAT++ RG+D+ R+ V+NYD+P D ++Y+HR+ R GR G K
Sbjct: 311 IKQGVID---ILVATDVVARGLDVPRITHVYNYDIPFDVESYIHRIGRTGRAGRK 362
>TAIR|locus:2087852 [details] [associations]
symbol:PMH2 "putative mitochondrial RNA helicase 2"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005634
"nucleus" evidence=ISM] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA;ISS] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005618
"cell wall" evidence=IDA] [GO:0000373 "Group II intron splicing"
evidence=IMP] [GO:0009409 "response to cold" evidence=IEP]
[GO:0043234 "protein complex" evidence=IDA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005739 GO:GO:0005524
GO:GO:0005618 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0043234
GO:GO:0005730 GO:GO:0009409 GO:GO:0003723 EMBL:AB022215
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0000373 eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
EMBL:AY062502 EMBL:AY093256 IPI:IPI00524382 RefSeq:NP_188872.2
UniGene:At.27322 ProteinModelPortal:Q9LUW5 SMR:Q9LUW5 STRING:Q9LUW5
PaxDb:Q9LUW5 PRIDE:Q9LUW5 EnsemblPlants:AT3G22330.1 GeneID:821802
KEGG:ath:AT3G22330 GeneFarm:1033 TAIR:At3g22330
HOGENOM:HOG000268800 InParanoid:Q9LUW5 OMA:HGRGRNP PhylomeDB:Q9LUW5
ProtClustDB:CLSN2684125 Genevestigator:Q9LUW5 GermOnline:AT3G22330
Uniprot:Q9LUW5
Length = 616
Score = 280 (103.6 bits), Expect = 2.7e-22, P = 2.7e-22
Identities = 87/313 (27%), Positives = 157/313 (50%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDS------NVYVLVMCHTRELAFQISKE 199
A+ G D++ +A++G GKT F + + ++ ++ N LV+ TRELA Q+ KE
Sbjct: 138 AMEGRDMIGRARTGTGKTLAFGIPIIDKIIKYNAKHGRGRNPLCLVLAPTRELARQVEKE 197
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ + + I +GG PI + L + + VGTPGR++ L++ LNLS ++
Sbjct: 198 FRESAPSLDTI---CLYGGTPIGQQMRQLD-YGVDVAVGTPGRVIDLMKRGALNLSEVQF 253
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV- 318
+LDE D+ML Q+ DV+ I P +Q MMFSAT+ IR + KK++++P+ V +
Sbjct: 254 VVLDEADQML-QVGFAEDVEIILEKLPEKRQSMMFSATMPSWIRSLTKKYLNNPLTVDLV 312
Query: 319 -DDEAKLTLHGLQQHYVXXXXXXXXXXXX-XXXDVLEFNQVVIFVKSVTRCIALSTLLSE 376
D + KL G+ + + + + + ++F ++ LS L+
Sbjct: 313 GDSDQKLA-DGITTYSIIADSYGRASIIGPLVTEHAKGGKCIVFTQTKRDADRLSYALA- 370
Query: 377 QNFPAVSIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSIS-EL 435
++F ++H ++Q +R + F+D H + + A+D A+ L+ D+ I EL
Sbjct: 371 RSFKCEALHGDISQSQRERTLAGFRDGHFNILV--ATDVA-ARGLD--VPNVDLIIHYEL 425
Query: 436 PDEIDLSTYIEGR 448
P+ + + GR
Sbjct: 426 PNNTETFVHRTGR 438
Score = 122 (48.0 bits), Expect = 0.00028, P = 0.00028
Identities = 19/47 (40%), Positives = 35/47 (74%)
Query: 99 WRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTK 145
+ ILVAT++ RG+D+ V+++ +Y++P +++T++HR R GR G K
Sbjct: 399 FNILVATDVAARGLDVPNVDLIIHYELPNNTETFVHRTGRTGRAGKK 445
>UNIPROTKB|Q3AFI3 [details] [associations]
symbol:CHY_0229 "ATP-dependent RNA helicase, DEAD box
family" species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195
HOGENOM:HOG000268810 KO:K05592 RefSeq:YP_359101.1
ProteinModelPortal:Q3AFI3 STRING:Q3AFI3 GeneID:3727044
KEGG:chy:CHY_0229 PATRIC:21273641 OMA:YAAKGLH
BioCyc:CHYD246194:GJCN-230-MONOMER Uniprot:Q3AFI3
Length = 430
Score = 275 (101.9 bits), Expect = 2.8e-22, P = 2.8e-22
Identities = 73/254 (28%), Positives = 130/254 (51%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G +++ QA +G GKTA ++L LQ+++ VL++ TRELA Q++ E + KY+
Sbjct: 39 GHNLVGQAPTGTGKTAAYLLPVLQRIQR-GKKAQVLIVTPTRELALQVADEVAKLGKYLK 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
++ +GG I++ L+ +++VGTPGRIL + K + +K ILDE D+M
Sbjct: 98 -VRALAVYGGQAIERQIRGLR-QGVEVIVGTPGRILDHIGRKTFPAAEIKIVILDEADEM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
L+ + D++ I + + +Q ++FSATL I+ + KKF+ V + K T+
Sbjct: 156 LD-MGFIDDIEAILNTLTNRQQTLLFSATLPAPIKTIIKKFLGGYKTVKLVGREK-TVPA 213
Query: 329 LQQ-HYVXXXXXXXXXXXXXXXDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
++Q +Y L Q ++F ++ R + L+ + + A +H
Sbjct: 214 IRQVYYELPETEKIEGLVSILNSELPI-QAIVFCRTKKRVDEVVEQLNFRGYAAKGLHGD 272
Query: 388 MTQEERLKKYQEFK 401
M+Q ER + + FK
Sbjct: 273 MSQRERTQTIKSFK 286
Score = 118 (46.6 bits), Expect = 0.00046, P = 0.00046
Identities = 20/43 (46%), Positives = 33/43 (76%)
Query: 101 ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+LVAT++ RG+DI V+ V N+D+P++ ++Y+HR+ R GR G
Sbjct: 292 LLVATDVAARGLDIPDVSHVINFDIPQNPESYIHRIGRTGRAG 334
WARNING: HSPs involving 593 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.388 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 448 404 0.00099 117 3 11 22 0.36 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 843
No. of states in DFA: 605 (64 KB)
Total size of DFA: 234 KB (2128 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:01
No. of threads or processors used: 24
Search cpu time: 31.26u 0.08s 31.34t Elapsed: 00:00:21
Total cpu time: 31.32u 0.09s 31.41t Elapsed: 00:00:23
Start: Thu Aug 15 12:53:32 2013 End: Thu Aug 15 12:53:55 2013
WARNINGS ISSUED: 2