RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy1548
(448 letters)
>d1t6na_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 207
Score = 137 bits (345), Expect = 9e-39
Identities = 159/239 (66%), Positives = 173/239 (72%), Gaps = 32/239 (13%)
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
SGFRDFLLKPE+LRAIVDC ++ P + A
Sbjct: 1 SGFRDFLLKPELLRAIVDC-----------------------GFEHPSEVQHECIPQAIL 37
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
G D+LCQAKSGMGKTAVFVLATLQQLE V VLVMCHTRELAFQISKE
Sbjct: 38 GM---------DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKE 88
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
YERFSKYM N+KV VFFGGL I+KDEE LK + P IVVGTPGRILAL RNK LNL +KH
Sbjct: 89 YERFSKYMPNVKVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARNKSLNLKHIKH 148
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
FILDECDKMLEQL+MRRDVQEIFR +PH KQVMMFSATLSKEIRPVC+KFM DPME++V
Sbjct: 149 FILDECDKMLEQLDMRRDVQEIFRMTPHEKQVMMFSATLSKEIRPVCRKFMQDPMEIFV 207
>d1hv8a1 c.37.1.19 (A:3-210) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 208
Score = 119 bits (300), Expect = 3e-32
Identities = 61/170 (35%), Positives = 96/170 (56%), Gaps = 5/170 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
+I+ QA++G GKTA F + ++ + + +++ TRELA Q++ E E
Sbjct: 42 EYNIVAQARTGSGKTASFAIPLIELVNENNGIEA-IILTPTRELAIQVADEIESLKGNK- 99
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N+K+ +GG I + LK N IVVGTPGRIL + LNL +K+FILDE D+M
Sbjct: 100 NLKIAKIYGGKAIYPQIKALK--NANIVVGTPGRILDHINRGTLNLKNVKYFILDEADEM 157
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
L +DV++I + K++++FSAT+ +EI + KK+M D +
Sbjct: 158 LNM-GFIKDVEKILNACNKDKRILLFSATMPREILNLAKKYMGDYSFIKA 206
>d2g9na1 c.37.1.19 (A:21-238) Initiation factor 4a {Human (Homo
sapiens) [TaxId: 9606]}
Length = 218
Score = 103 bits (258), Expect = 3e-26
Identities = 61/170 (35%), Positives = 93/170 (54%), Gaps = 2/170 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ QA+SG GKTA F ++ LQQ+E LV+ TRELA QI K YM
Sbjct: 49 GYDVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYM- 107
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
GG ++ + + L+ P I+VGTPGR+ ++ + L+ +K F+LDE D+M
Sbjct: 108 GASCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLNRRYLSPKYIKMFVLDEADEM 167
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+ + +IF+ QV++ SAT+ ++ V KKFM DP+ + V
Sbjct: 168 -LSRGFKDQIYDIFQKLNSNTQVVLLSATMPSDVLEVTKKFMRDPIRILV 216
>d1qdea_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 212
Score = 102 bits (254), Expect = 8e-26
Identities = 62/170 (36%), Positives = 94/170 (55%), Gaps = 4/170 (2%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D+L QA+SG GKT F +A LQ+++T+ L++ TRELA QI K + +M
Sbjct: 47 GHDVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMD 106
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
G +D E L+ + QIVVGTPGR+ ++ ++ +K FILDE D+M
Sbjct: 107 IKVHACIGGT-SFVEDAEGLR--DAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDEADEM 163
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
L + + +IF P T QV++ SAT+ ++ V KFM +P+ + V
Sbjct: 164 LSS-GFKEQIYQIFTLLPPTTQVVLLSATMPNDVLEVTTKFMRNPVRILV 212
>d1veca_ c.37.1.19 (A:) DEAD box RNA helicase rck/p54 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 206
Score = 93.1 bits (230), Expect = 1e-22
Identities = 61/237 (25%), Positives = 111/237 (46%), Gaps = 34/237 (14%)
Query: 80 SGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARA 139
+ F D+ LK E+L I + ++ P +A +
Sbjct: 3 NEFEDYCLKRELLMGIFEM-----------------------GWEKPSPIQEESIPIALS 39
Query: 140 GRFGTKAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKE 199
GR DIL +AK+G GK+ +++ L++L+ N+ +V+ TRELA Q+S+
Sbjct: 40 GR---------DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQI 90
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ SK+M KV GG ++ D L ++ TPGRIL L++ + ++
Sbjct: 91 CIQVSKHMGGAKVMATTGGTNLRDDIMRLDDTVHVVI-ATPGRILDLIKKGVAKVDHVQM 149
Query: 260 FILDECDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+LDE DK+L Q + + +++I + P +Q++++SAT ++ + P E+
Sbjct: 150 IVLDEADKLLSQ-DFVQIMEDIILTLPKNRQILLYSATFPLSVQKFMNSHLEKPYEI 205
>d1wrba1 c.37.1.19 (A:164-401) putative ATP-dependent RNA helicase
VlgB {Flatworm (Dugesia japonica) [TaxId: 6161]}
Length = 238
Score = 92.7 bits (229), Expect = 4e-22
Identities = 52/182 (28%), Positives = 89/182 (48%), Gaps = 14/182 (7%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSN---------VYVLVMCHTRELAFQISKE 199
DI+ A++G GKTA F++ + L D N L++ TRELA QI E
Sbjct: 58 HRDIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSE 117
Query: 200 YERFSKYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
++FS ++ V +GG ++V TPGR++ + K++L K+
Sbjct: 118 SQKFSLNT-PLRSCVVYGGADTHSQIRE-VQMGCHLLVATPGRLVDFIEKNKISLEFCKY 175
Query: 260 FILDE---CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEV 316
+LDE M + ++R+ ++E S +Q +MFSAT KEI+ + F+++ + +
Sbjct: 176 IVLDEADRMLDMGFEPQIRKIIEESNMPSGINRQTLMFSATFPKEIQKLAADFLYNYIFM 235
Query: 317 YV 318
V
Sbjct: 236 TV 237
>d2j0sa1 c.37.1.19 (A:22-243) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 222
Score = 89.9 bits (222), Expect = 3e-21
Identities = 59/170 (34%), Positives = 91/170 (53%), Gaps = 3/170 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G D++ Q++SG GKTA F ++ LQ L+ L++ TRELA QI K YM
Sbjct: 54 GRDVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYM- 112
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
N++ GG + +D L + +V GTPGR+ ++R + L +K +LDE D+M
Sbjct: 113 NVQCHACIGGTNVGEDIRKLD-YGQHVVAGTPGRVFDMIRRRSLRTRAIKMLVLDEADEM 171
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
+ + +++R P QV++ SATL EI + KFM DP+ + V
Sbjct: 172 -LNKGFKEQIYDVYRYLPPATQVVLISATLPHEILEMTNKFMTDPIRILV 220
>d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus
type 2 [TaxId: 11060]}
Length = 305
Score = 88.8 bits (219), Expect = 3e-20
Identities = 30/255 (11%), Positives = 66/255 (25%), Gaps = 36/255 (14%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
+ G GKT ++ A +++ + L++ TR +A ++ +
Sbjct: 9 KRLTIMDLHPGAGKTKRYLPAIVREA--IKRGLRTLILAPTRVVAAEMEEALRGLPIRYQ 66
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
+ T + + + + + + I+DE
Sbjct: 67 TPAI-------------RAEHTGREIVDLMCHATFTMRLLSP-IRVPNYNLIIMDEAHFT 112
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHG 328
+ R + +AT P +
Sbjct: 113 DPA-SIAARGYISTRVEMGEAAGIFMTATPPGSRDPFPQSNAPI---------------- 155
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++ E N + D + V FV S+ ++ L + + + R
Sbjct: 156 -MDEEREIPERSWNSGHEWVTD--FKGKTVWFVPSIKAGNDIAACLRKNGKKVIQLSRKT 212
Query: 389 TQEERLKKYQEFKDF 403
E +K DF
Sbjct: 213 FDSEYIKTRTNDWDF 227
Score = 33.4 bits (75), Expect = 0.046
Identities = 13/92 (14%), Positives = 25/92 (27%), Gaps = 24/92 (26%)
Query: 75 VSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIE---------RVNIVFNYD- 124
+ + E ++ + W +V T++ G + + + V D
Sbjct: 206 IQLSRK-----TFDSEYIKTRTNDWDFVVTTDISEMGANFKAERVIDPRRCMKPVILTDG 260
Query: 125 ---------MPEDSDTYLHRVARAGRFGTKAV 147
MP + R R GR
Sbjct: 261 EERVILAGPMPVTHSSAAQRRGRVGRNPKNEN 292
>d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 237
Score = 85.7 bits (211), Expect = 1e-19
Identities = 25/181 (13%), Positives = 57/181 (31%), Gaps = 23/181 (12%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+ + A +G+GKT+ + +L V+ T L Q ++ +++
Sbjct: 54 RILRKESFAATAPTGVGKTSFGLAMSLFLALK---GKRCYVIFPTSLLVIQAAETIRKYA 110
Query: 205 KYMSNIKVGV-----FFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKH 259
+ + +K+ N +IV+ T + L
Sbjct: 111 EKA-GVGTENLIGYYHGRIPKREKENFMQNLRNFKIVITTTQFL----SKHYRELGHFDF 165
Query: 260 FILDECDKMLEQ----------LEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKF 309
+D+ D +L+ L D++ +M+ +AT K + +
Sbjct: 166 IFVDDVDAILKASKNVDKLLHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQ 225
Query: 310 M 310
+
Sbjct: 226 L 226
>d1s2ma1 c.37.1.19 (A:46-251) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 206
Score = 81.6 bits (200), Expect = 2e-18
Identities = 53/172 (30%), Positives = 81/172 (47%), Gaps = 3/172 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G DIL +AK+G GKTA FV+ + N ++ + + R
Sbjct: 38 GRDILARAKNGTGKTAAFVIP-TLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHC 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I V GG ++ D L I+VGTPGR+L L K +LS FI+DE DKM
Sbjct: 97 GISCMVTTGGTNLRDDILRLN-ETVHILVGTPGRVLDLASRKVADLSDCSLFIMDEADKM 155
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD 320
L + + + +++I P T Q ++FSAT ++ K +H P E+ + +
Sbjct: 156 LSR-DFKTIIEQILSFLPPTHQSLLFSATFPLTVKEFMVKHLHKPYEINLME 206
>d1t5ia_ c.37.1.19 (A:) Spliceosome RNA helicase BAT1 (UAP56) {Human
(Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 77.4 bits (189), Expect = 2e-17
Identities = 98/165 (59%), Positives = 112/165 (67%), Gaps = 46/165 (27%)
Query: 328 GLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRG 387
GLQQ+YVKLK+NEKN+KLF+LLDVLEFNQVVIFVKSV RCIAL+ LL EQNFPA++IHRG
Sbjct: 1 GLQQYYVKLKDNEKNRKLFDLLDVLEFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRG 60
Query: 388 MTQEERLKKYQEFKDFH------------------------------------------- 404
M QEERL +YQ+FKDF
Sbjct: 61 MPQEERLSRYQQFKDFQRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGR 120
Query: 405 ---KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYIE 446
KGLAITF SDENDAKILN+VQDRF+V+ISELPDEID+S+YIE
Sbjct: 121 FGTKGLAITFVSDENDAKILNDVQDRFEVNISELPDEIDISSYIE 165
Score = 25.8 bits (55), Expect = 8.3
Identities = 45/50 (90%), Positives = 46/50 (92%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RILVATNLFGRGMDIERVNI FNYDMPEDSDTYLHRVARAGRFGTK +
Sbjct: 77 QRRILVATNLFGRGMDIERVNIAFNYDMPEDSDTYLHRVARAGRFGTKGL 126
>d1q0ua_ c.37.1.19 (A:) Probable DEAD box RNA helicase YqfR
{Bacillus stearothermophilus [TaxId: 1422]}
Length = 209
Score = 69.3 bits (168), Expect = 3e-14
Identities = 52/172 (30%), Positives = 96/172 (55%), Gaps = 3/172 (1%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G ++ Q+++G GKT ++L +++++ + V ++ TRELA QI E + +K+
Sbjct: 38 GESMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCP 97
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHN--PQIVVGTPGRILALVRNKKLNLSLLKHFILDECD 266
++ V + ++ L+ N P IV+GTPGRI +R + L++ ++DE D
Sbjct: 98 KDRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIREQALDVHTAHILVVDEAD 157
Query: 267 KMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYV 318
ML+ DV +I P Q+++FSAT+ ++++P KK+M +P V+V
Sbjct: 158 LMLDM-GFITDVDQIAARMPKDLQMLVFSATIPEKLKPFLKKYMENPTFVHV 208
>d1oywa2 c.37.1.19 (A:1-206) RecQ helicase domain {Escherichia coli
[TaxId: 562]}
Length = 206
Score = 63.1 bits (152), Expect = 4e-12
Identities = 25/178 (14%), Positives = 54/178 (30%), Gaps = 14/178 (7%)
Query: 146 AVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSK 205
+ G D L +G GK+ + + L T +V+ L + +
Sbjct: 37 VLSGRDCLVVMPTGGGKSLCYQIPALLLNGLT------VVVSPLISLMKDQVDQLQANGV 90
Query: 206 YMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDEC 265
+ + + +T +++ P R++ + L +DE
Sbjct: 91 AAACLNSTQTRE--QQLEVMTGCRTGQIRLLYIAPERLMLDNFLEHLAHWNPVLLAVDEA 148
Query: 266 DKMLEQLEMRRD---VQEIFRSSPHTKQVMMFSATLSKEIR-PVCKKF-MHDPMEVYV 318
+ + R R T M +AT R + + ++DP + +
Sbjct: 149 HCISQWGHDFRPEYAALGQLRQRFPTLPFMALTATADDTTRQDIVRLLGLNDP-LIQI 205
>d1wp9a1 c.37.1.19 (A:1-200) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 200
Score = 61.7 bits (148), Expect = 9e-12
Identities = 26/194 (13%), Positives = 65/194 (33%), Gaps = 15/194 (7%)
Query: 145 KAVLGMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFS 204
+ L +G+GKT + ++ +L V +L + + E F
Sbjct: 19 AKCKETNCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTK-----PLVLQHAESFR 73
Query: 205 KYMSNIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDE 264
+ + + +E +++V TP I + +++L + + DE
Sbjct: 74 RLFNLPPEKIVALTGEKSPEERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDE 133
Query: 265 CDKMLEQLEMRRDVQEIFRSSPHTKQVMMFSATLS---KEIRPVCKKFMHDPMEVYVDDE 321
+ + + ++ V+ +A+ ++I V + +E ++
Sbjct: 134 AHRAVGN-YAYVFIAREYKRQAKNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENS 192
Query: 322 AKLTLHGLQQHYVK 335
+ + YVK
Sbjct: 193 PDV------RPYVK 200
>d1a1va2 c.37.1.14 (A:326-624) HCV helicase domain {Human hepatitis
C virus (HCV), different isolates [TaxId: 11103]}
Length = 299
Score = 59.2 bits (143), Expect = 2e-10
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 3/45 (6%)
Query: 100 RILVATNLFGRGM---DIERVNIVFNYDMPEDSDTYLHRVARAGR 141
++ N ++ + +P+D+ + R R GR
Sbjct: 98 DSVIDCNTCVTQTVDFSLDPTFTIETTTLPQDAVSRTQRRGRTGR 142
Score = 42.2 bits (99), Expect = 7e-05
Identities = 19/112 (16%), Positives = 38/112 (33%), Gaps = 13/112 (11%)
Query: 348 LLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQEERLKKYQEF------- 400
L+V++ + +IF S +C L+ L AV+ +RG+
Sbjct: 30 PLEVIKGGRHLIFCHSKKKCDELAAKLVALGINAVAYYRGLDVSVIPTSGDVVVVATDAL 89
Query: 401 KDFHKG-LAITFASDENDAKIL-NNVQDRFDVSISELPDEIDLSTYIE--GR 448
G + + + ++ F + + LP D + + GR
Sbjct: 90 MTGFTGDFDSVIDCNTCVTQTVDFSLDPTFTIETTTLP--QDAVSRTQRRGR 139
>d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus
[TaxId: 2234]}
Length = 202
Score = 56.1 bits (134), Expect = 8e-10
Identities = 25/153 (16%), Positives = 59/153 (38%), Gaps = 11/153 (7%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
G ++L + GKT + +A +++ ++Y + R LA + + ++++ K
Sbjct: 40 GKNLLLAMPTAAGKTLLAEMAMVREAIKGGKSLY---VVPLRALAGEKYESFKKWEKIGL 96
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
I + + + I+V T + +L+RN+ + + ++DE +
Sbjct: 97 RIGISTGDY------ESRDEHLGDCDIIVTTSEKADSLIRNRASWIKAVSCLVVDEIHLL 150
Query: 269 LEQ--LEMRRDVQEIFRSSPHTKQVMMFSATLS 299
+ + R +V+ SAT
Sbjct: 151 DSEKRGATLEILVTKMRRMNKALRVIGLSATAP 183
>d1wp9a2 c.37.1.19 (A:201-486) putative ATP-dependent RNA helicase
PF2015 {Pyrococcus furiosus [TaxId: 2261]}
Length = 286
Score = 55.7 bits (133), Expect = 3e-09
Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 13/129 (10%)
Query: 32 FPHSKMADNDDLLDYE-DEENTEQIV-------ADGAGDALAKQKEVKGAYVSIHSSGFR 83
H KM +++ + + +I+ + +K +S
Sbjct: 140 LDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQASKEN 199
Query: 84 DFLLKPEILRAIVDCWR-----ILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVAR 138
D L + I+D + +LVAT++ G+D+ V++V Y+ + + R R
Sbjct: 200 DRGLSQREQKLILDEFARGEFNVLVATSVGEEGLDVPEVDLVVFYEPVPSAIRSIQRRGR 259
Query: 139 AGRFGTKAV 147
GR V
Sbjct: 260 TGRHMPGRV 268
Score = 30.3 bits (67), Expect = 0.40
Identities = 14/92 (15%), Positives = 32/92 (34%), Gaps = 4/92 (4%)
Query: 315 EVYVDDEAKLTLHGLQQHYVKLKENEKNKKLFELLDVL----EFNQVVIFVKSVTRCIAL 370
E++ D K + L Q ++ K KL E++ + +++++F +
Sbjct: 118 EIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKI 177
Query: 371 STLLSEQNFPAVSIHRGMTQEERLKKYQEFKD 402
L + A ++E Q +
Sbjct: 178 VNELVKDGIKAKRFVGQASKENDRGLSQREQK 209
>d1s2ma2 c.37.1.19 (A:252-422) Putative ATP-dependent RNA helicase
DHH1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 171
Score = 48.9 bits (115), Expect = 2e-07
Identities = 34/168 (20%), Positives = 58/168 (34%), Gaps = 47/168 (27%)
Query: 324 LTLHGLQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVS 383
LTL G+ Q+Y ++E +K L L L+ NQ +IF S R L+ +++ +
Sbjct: 2 LTLKGITQYYAFVEERQKLHCLNTLFSKLQINQAIIFCNSTNRVELLAKKITDLGYSCYY 61
Query: 384 IH--------------------RGMTQEERLKKYQEFKDFH------------------- 404
H R + + L + + + +
Sbjct: 62 SHARMKQQERNKVFHEFRQGKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIG 121
Query: 405 -------KGLAITFASDENDAKILNNVQDRFDVSISELPDEIDLSTYI 445
GLAI + ND L ++ I+ +P ID S Y+
Sbjct: 122 RSGRFGHLGLAINLIN-WNDRFNLYKIEQELGTEIAAIPATIDKSLYV 168
Score = 33.1 bits (74), Expect = 0.030
Identities = 24/51 (47%), Positives = 36/51 (70%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R LV ++L RG+DI+ VN+V N+D P+ ++TYLHR+ R+GRFG +
Sbjct: 81 GKVRTLVCSDLLTRGIDIQAVNVVINFDFPKTAETYLHRIGRSGRFGHLGL 131
>d1jr6a_ c.37.1.14 (A:) HCV helicase domain {Human hepatitis C virus
(HCV), different isolates [TaxId: 11103]}
Length = 138
Score = 46.6 bits (110), Expect = 5e-07
Identities = 10/47 (21%), Positives = 20/47 (42%), Gaps = 3/47 (6%)
Query: 98 CWRILVATNLFGRGMDIER---VNIVFNYDMPEDSDTYLHRVARAGR 141
++VAT+ G + ++ + P+D+ + R R GR
Sbjct: 78 GDVVVVATDALMTGFTGDFDSVIDCNTSDGKPQDAVSRTQRRGRTGR 124
>d1t5la2 c.37.1.19 (A:415-595) Nucleotide excision repair enzyme
UvrB {Bacillus caldotenax [TaxId: 1395]}
Length = 181
Score = 45.6 bits (107), Expect = 3e-06
Identities = 25/118 (21%), Positives = 43/118 (36%), Gaps = 11/118 (9%)
Query: 41 DDLLD--YEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDC 98
DDL+ E E E+ + +A+ I + + E + I D
Sbjct: 18 DDLIGEIRERVERNERTLVTTLTKKMAEDLTDYLKEAGIKVAYLHSEIKTLERIEIIRDL 77
Query: 99 ----WRILVATNLFGRGMDIERVNIVFNYDMPEDSD-----TYLHRVARAGRFGTKAV 147
+ +LV NL G+DI V++V D ++ + + + RA R V
Sbjct: 78 RLGKYDVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNANGHV 135
>d2rb4a1 c.37.1.19 (A:307-474) ATP-dependent RNA helicase DDX25
{Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 45.0 bits (105), Expect = 3e-06
Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 9/127 (7%)
Query: 324 LTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAV 382
LTL+ ++Q+YV +K + L + + Q +IF ++ L+ + +
Sbjct: 1 LTLNNIRQYYVLCEHRKDKYQALCNIYGSITIGQAIIFCQTRRNAKWLTVEMIQDGHQVS 60
Query: 383 SIHRGMTQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELP----DE 438
+ +T E+R Q F+D + + IT N +V+ V +LP +E
Sbjct: 61 LLSGELTVEQRASIIQRFRDGKEKVLITT----NVCARGIDVKQVTIVVNFDLPVKQGEE 116
Query: 439 IDLSTYI 445
D TY+
Sbjct: 117 PDYETYL 123
Score = 33.0 bits (74), Expect = 0.032
Identities = 24/57 (42%), Positives = 37/57 (64%), Gaps = 6/57 (10%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMP------EDSDTYLHRVARAGRFGTKAV 147
++L+ TN+ RG+D+++V IV N+D+P D +TYLHR+ R GRFG K +
Sbjct: 81 GKEKVLITTNVCARGIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGKKGL 137
>d1hv8a2 c.37.1.19 (A:211-365) Putative DEAD box RNA helicase
{Archaeon Methanococcus jannaschii [TaxId: 2190]}
Length = 155
Score = 44.2 bits (103), Expect = 5e-06
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
RIL+AT++ RG+D+ +N V NY +P++ ++Y+HR+ R GR G K
Sbjct: 78 KIRILIATDVMSRGIDVNDLNCVINYHLPQNPESYMHRIGRTGRAGKKGK 127
Score = 33.4 bits (75), Expect = 0.026
Identities = 24/76 (31%), Positives = 42/76 (55%), Gaps = 1/76 (1%)
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++Q YV++ ENE+ + L LL EF ++F K+ L+++L + F A +IH +
Sbjct: 4 IEQSYVEVNENERFEALCRLLKNKEF-YGLVFCKTKRDTKELASMLRDIGFKAGAIHGDL 62
Query: 389 TQEERLKKYQEFKDFH 404
+Q +R K + FK
Sbjct: 63 SQSQREKVIRLFKQKK 78
>d1fuka_ c.37.1.19 (A:) Initiation factor 4a {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 162
Score = 43.8 bits (102), Expect = 7e-06
Identities = 28/86 (32%), Positives = 45/86 (52%)
Query: 62 DALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVF 121
+ L + VS S + RIL++T+L RG+D+++V++V
Sbjct: 41 EELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVI 100
Query: 122 NYDMPEDSDTYLHRVARAGRFGTKAV 147
NYD+P + + Y+HR+ R GRFG K V
Sbjct: 101 NYDLPANKENYIHRIGRGGRFGRKGV 126
Score = 42.2 bits (98), Expect = 3e-05
Identities = 34/158 (21%), Positives = 57/158 (36%), Gaps = 48/158 (30%)
Query: 330 QQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
+Q YV + +E K + L +L D + Q VIF + + L+T L F +I+ +
Sbjct: 2 KQFYVNVEEEEYKYECLTDLYDSISVTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDL 61
Query: 389 TQEERLKKYQEFKDF--------------------------------------------- 403
Q+ER +EF+
Sbjct: 62 PQQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGRGGRF 121
Query: 404 -HKGLAITFASDENDAKILNNVQDRFDVSISELPDEID 440
KG+AI F ++E D + ++ + I ELP +I
Sbjct: 122 GRKGVAINFVTNE-DVGAMRELEKFYSTQIEELPSDIA 158
>d2j0sa2 c.37.1.19 (A:244-411) Probable ATP-dependent RNA helicase
DDX48 {Human (Homo sapiens) [TaxId: 9606]}
Length = 168
Score = 41.8 bits (97), Expect = 4e-05
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 1/83 (1%)
Query: 323 KLTLHGLQQHYVKL-KENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPA 381
+LTL G++Q +V + +E K L +L D L Q VIF + + L+ + E NF
Sbjct: 2 ELTLEGIKQFFVAVEREEWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTEKMREANFTV 61
Query: 382 VSIHRGMTQEERLKKYQEFKDFH 404
S+H M Q+ER +EF+
Sbjct: 62 SSMHGDMPQKERESIMKEFRSGA 84
Score = 38.4 bits (88), Expect = 6e-04
Identities = 20/51 (39%), Positives = 39/51 (76%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
R+L++T+++ RG+D+ +V+++ NYD+P + + Y+HR+ R+GR+G K V
Sbjct: 83 GASRVLISTDVWARGLDVPQVSLIINYDLPNNRELYIHRIGRSGRYGRKGV 133
>d2fwra1 c.37.1.19 (A:257-456) DNA repair protein RAD25
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 200
Score = 40.7 bits (94), Expect = 1e-04
Identities = 9/47 (19%), Positives = 20/47 (42%)
Query: 97 DCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG 143
+R +V++ + G+D+ N+ + Y+ R+ R R
Sbjct: 137 GRFRAIVSSQVLDEGIDVPDANVGVIMSGSGSAREYIQRLGRILRPS 183
>d1gkub2 c.37.1.16 (B:251-498) Helicase-like "domain" of reverse
gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Length = 248
Score = 39.0 bits (90), Expect = 7e-04
Identities = 12/104 (11%), Positives = 32/104 (30%), Gaps = 7/104 (6%)
Query: 329 LQQHYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGM 388
++ +E L +L+ L +I+ ++ + L G+
Sbjct: 1 VRNVEDVAVNDESISTLSSILEKLG-TGGIIYARTGEEAEEIYESLKN------KFRIGI 53
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSI 432
+ Y++F + I A ++ +R ++
Sbjct: 54 VTATKKGDYEKFVEGEIDHLIGTAHYYGTLVRGLDLPERIRFAV 97
Score = 38.2 bits (88), Expect = 0.001
Identities = 9/56 (16%), Positives = 18/56 (32%), Gaps = 9/56 (16%)
Query: 97 DCWRILVATNLF----GRGMDI-ERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAV 147
L+ T + RG+D+ ER+ P ++ + + V
Sbjct: 68 GEIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP----SFRVTIEDIDSLSPQMV 119
>d1oywa3 c.37.1.19 (A:207-406) RecQ helicase domain {Escherichia
coli [TaxId: 562]}
Length = 200
Score = 38.1 bits (87), Expect = 0.001
Identities = 31/130 (23%), Positives = 57/130 (43%), Gaps = 7/130 (5%)
Query: 21 FFRAFIRFSSSFPHSKMADNDDLLDYEDEENTEQIV----ADGAGDALAKQKEVKGAYVS 76
F R IR+ + D L+ Y E+ + + + + A + + KG +
Sbjct: 2 FDRPNIRYMLMEKFKPL---DQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAA 58
Query: 77 IHSSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRV 136
+ +G + + + D +I+VAT FG G++ V V ++D+P + ++Y
Sbjct: 59 AYHAGLENNVRADVQEKFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQET 118
Query: 137 ARAGRFGTKA 146
RAGR G A
Sbjct: 119 GRAGRDGLPA 128
Score = 35.0 bits (79), Expect = 0.010
Identities = 10/73 (13%), Positives = 27/73 (36%)
Query: 332 HYVKLKENEKNKKLFELLDVLEFNQVVIFVKSVTRCIALSTLLSEQNFPAVSIHRGMTQE 391
Y+ +++ + +L + +I+ S + + L + A + H G+
Sbjct: 8 RYMLMEKFKPLDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENN 67
Query: 392 ERLKKYQEFKDFH 404
R ++F+
Sbjct: 68 VRADVQEKFQRDD 80
>d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever
virus [TaxId: 11089]}
Length = 140
Score = 35.4 bits (80), Expect = 0.004
Identities = 23/149 (15%), Positives = 44/149 (29%), Gaps = 17/149 (11%)
Query: 149 GMDILCQAKSGMGKTAVFVLATLQQLETTDSNVYVLVMCHTRELAFQISKEYERFSKYMS 208
GM + G GKT F+ L + + LV+ TR + ++ + +
Sbjct: 7 GMTTVLDFHPGAGKTRRFLPQILAECARR--RLRTLVLAPTRVVLSEMKEAFHGLDVKFH 64
Query: 209 NIKVGVFFGGLPIQKDEEYLKTHNPQIVVGTPGRILALVRNKKLNLSLLKHFILDECDKM 268
G + + R+L R + I+DE +
Sbjct: 65 TQAFSAHGSGREVIDAMCHATLTY---------RMLEPTRVVNWEV-----IIMDEAHFL 110
Query: 269 LEQLEMRRDVQEIFRSSPHTKQVMMFSAT 297
R + + ++M +AT
Sbjct: 111 DPASIAARGWAAHRARANESATILM-TAT 138
>d1c4oa2 c.37.1.19 (A:410-583) Nucleotide excision repair enzyme
UvrB {Thermus thermophilus [TaxId: 274]}
Length = 174
Score = 34.7 bits (79), Expect = 0.012
Identities = 21/114 (18%), Positives = 37/114 (32%), Gaps = 11/114 (9%)
Query: 41 DDLLD--YEDEENTEQIVADG----AGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRA 94
DL++ E E+ + + L G F + I
Sbjct: 18 LDLMEGIRERAARGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDL 77
Query: 95 IVDCWRILVATNLFGRGMDIERVNIVFNYDMPEDSD-----TYLHRVARAGRFG 143
+ + LV NL G+DI V++V D ++ + + + RA R
Sbjct: 78 RLGHYDCLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNA 131
>d2p6ra4 c.37.1.19 (A:203-403) Hel308 helicase {Archaeoglobus
fulgidus [TaxId: 2234]}
Length = 201
Score = 33.3 bits (75), Expect = 0.034
Identities = 19/104 (18%), Positives = 36/104 (34%), Gaps = 7/104 (6%)
Query: 47 EDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWRILVATN 106
E+E + I+ + G+ K E + H +G + + +++VAT
Sbjct: 69 ENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAGLLNGQRRVVEDAFRRGNIKVVVATP 128
Query: 107 LFGRGMDIERVNIVF-------NYDMPEDSDTYLHRVARAGRFG 143
G+++ ++ Y Y RAGR G
Sbjct: 129 TLAAGVNLPARRVIVRSLYRFDGYSKRIKVSEYKQMAGRAGRPG 172
>d1zbfa1 c.55.3.1 (A:62-193) BH0863-like Ribonuclease H {Bacillus
halodurans [TaxId: 86665]}
Length = 132
Score = 30.3 bits (68), Expect = 0.20
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 10/85 (11%)
Query: 274 MRRDVQEIFRSSP---HTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDDEAKLTLHGLQ 330
+ + +F P T + F A + + + ++ + ++
Sbjct: 26 DTKTGEVLFEREPIPIGTNNMGEFLAIVH-----GLRYLKERNSRKPIYSNSQTAIKWVK 80
Query: 331 QHYVK--LKENEKNKKLFELLDVLE 353
K L NE+ +++L+D E
Sbjct: 81 DKKAKSTLVRNEETALIWKLVDEAE 105
>g1b35.1 b.121.4.1 (D:,C:) Insect picorna-like virus coat proteins
{Cricket paralysis virus [TaxId: 12136]}
Length = 339
Score = 30.4 bits (68), Expect = 0.48
Identities = 12/77 (15%), Positives = 22/77 (28%), Gaps = 2/77 (2%)
Query: 112 MDIERVNIVFNYDMPEDSDTYLHRVARAGRFGTKAVLGMDILCQAKSGMGKTAVFVLATL 171
+D+ R + ++ +P R D G V VL L
Sbjct: 222 VDL-RTSTAVSFTVPYIGSRPWLYCIRPESSWLSKD-NTDGALMYNCVSGIVRVEVLNQL 279
Query: 172 QQLETTDSNVYVLVMCH 188
+ S + V+ +
Sbjct: 280 VAAQNVFSEIDVICEVN 296
>d1iwga1 d.58.44.1 (A:38-134) Multidrug efflux transporter AcrB pore
domain; PN1, PN2, PC1 and PC2 subdomains {Escherichia
coli [TaxId: 562]}
Length = 97
Score = 28.7 bits (64), Expect = 0.48
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 3/48 (6%)
Query: 396 KYQEFKDFHKGLA---ITFASDENDAKILNNVQDRFDVSISELPDEID 440
Y G +TF S + VQ++ +++ LP E+
Sbjct: 39 MYMSSNSDSTGTVQITLTFESGTDADIAQVQVQNKLQLAMPLLPQEVQ 86
>d1z3ix1 c.37.1.19 (X:390-735) Rad54-like, Rad54L {Zebra fish (Danio
rerio) [TaxId: 7955]}
Length = 346
Score = 29.1 bits (64), Expect = 0.98
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 1/59 (1%)
Query: 98 CWRILVATNLFGRGMDIERVNIVFNYDMPEDSDTYLHRVARAGRFG-TKAVLGMDILCQ 155
+ ++++ G G+++ N + +D + +AR R G K +L
Sbjct: 171 EFIFMLSSKAGGCGLNLIGANRLVMFDPDWNPANDEQAMARVWRDGQKKTCYIYRLLST 229
>d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus
[TaxId: 2261]}
Length = 60
Score = 25.8 bits (57), Expect = 2.4
Identities = 7/29 (24%), Positives = 14/29 (48%)
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLS 442
DE D IL ++ +E+ ++ +S
Sbjct: 2 DERDKIILEILEKDARTPFTEIAKKLGIS 30
>d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 60
Score = 25.4 bits (56), Expect = 2.6
Identities = 8/29 (27%), Positives = 14/29 (48%)
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLS 442
DE D KI+ +Q+ + E+ L+
Sbjct: 2 DEIDKKIIKILQNDGKAPLREISKITGLA 30
>d1yfba1 b.129.1.3 (A:3-53) Transcription-state regulator AbrB, the
N-terminal DNA recognition domain {Bacillus subtilis
[TaxId: 1423]}
Length = 51
Score = 24.9 bits (55), Expect = 3.8
Identities = 9/25 (36%), Positives = 13/25 (52%)
Query: 297 TLSKEIRPVCKKFMHDPMEVYVDDE 321
+ E+R D +E+YVDDE
Sbjct: 17 VIPIELRRTLGIAEKDALEIYVDDE 41
>d1hara_ e.8.1.2 (A:) HIV-1 reverse transcriptase {Human
immunodeficiency virus type 1 [TaxId: 11676]}
Length = 216
Score = 26.9 bits (59), Expect = 4.4
Identities = 15/68 (22%), Positives = 24/68 (35%), Gaps = 17/68 (25%)
Query: 285 SPHTKQVMMFSATLSKEIRPVCKKFMHDPMEVYVDD---EAKLTLHGLQQHYVKLKENEK 341
SP Q M +K + P + Y+DD + L + H K++E
Sbjct: 156 SPAIFQSSM-----TKILAPFKAANPDIVIYQYMDDLYVGSDLA---IGAHRTKIEE--- 204
Query: 342 NKKLFELL 349
L + L
Sbjct: 205 ---LRQHL 209
>d1vcfa1 c.1.4.1 (A:23-332) Isopentenyl-diphosphate delta-isomerase
{Thermus thermophilus [TaxId: 274]}
Length = 310
Score = 26.8 bits (58), Expect = 5.5
Identities = 6/36 (16%), Positives = 15/36 (41%), Gaps = 1/36 (2%)
Query: 79 SSGFRDFLLKPEILRAIVDCWRILVATNLFGRGMDI 114
++G F L+ + L + + + T G+ +
Sbjct: 3 TTGLEGFRLRYQALAG-LALSEVDLTTPFLGKTLKA 37
>d2pjua1 c.92.3.1 (A:11-196) Propionate catabolism operon regulatory
protein PrpR {Escherichia coli [TaxId: 562]}
Length = 186
Score = 26.2 bits (58), Expect = 7.2
Identities = 20/134 (14%), Positives = 47/134 (35%), Gaps = 15/134 (11%)
Query: 41 DDLLDYEDEENTEQIVADGAGDALAKQKEVKGAYVSIHSSGFRDFLLKPEILRAIVDCWR 100
+ E + I+A G+ A K + + + I SG+ ++L+ + +
Sbjct: 41 TYIRKKLANERCDAIIAAGSNGAYLKSR-LSVPVILIKPSGY-------DVLQFLAKAGK 92
Query: 101 ILVATNLFGRGM---DIERVNIVFNYDMP----EDSDTYLHRVARAGRFGTKAVLGMDIL 153
+ + + + FN + + ++ GT+AV+G ++
Sbjct: 93 LTSSIGVVTYQETIPALVAFQKTFNLRLDQRSYITEEDARGQINELKANGTEAVVGAGLI 152
Query: 154 CQAKSGMGKTAVFV 167
G T +F+
Sbjct: 153 TDLAEEAGMTGIFI 166
>d2cg4a1 a.4.5.32 (A:4-66) Regulatory protein AsnC {Escherichia coli
[TaxId: 562]}
Length = 63
Score = 24.2 bits (53), Expect = 7.5
Identities = 7/29 (24%), Positives = 12/29 (41%)
Query: 414 DENDAKILNNVQDRFDVSISELPDEIDLS 442
D D IL + + +EL + +S
Sbjct: 4 DNLDRGILEALMGNARTAYAELAKQFGVS 32
>d2ahob1 a.60.14.1 (B:85-175) Eukaryotic initiation factor 2alpha,
eIF2alpha, domain 2 {Sulfolobus solfataricus [TaxId:
2287]}
Length = 91
Score = 24.6 bits (54), Expect = 8.7
Identities = 11/51 (21%), Positives = 21/51 (41%), Gaps = 11/51 (21%)
Query: 389 TQEERLKKYQEFKDFHKGLAITFASDENDAKILNNVQDRFDVSISELPDEI 439
T +ER KK ++K + KIL V + +S + +++
Sbjct: 2 TDDERRKKNLQWKKIQRLD-----------KILELVSQKLKLSEKDAWEQV 41
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.321 0.136 0.388
Gapped
Lambda K H
0.267 0.0484 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,651,498
Number of extensions: 79104
Number of successful extensions: 387
Number of sequences better than 10.0: 1
Number of HSP's gapped: 372
Number of HSP's successfully gapped: 67
Length of query: 448
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 360
Effective length of database: 1,199,356
Effective search space: 431768160
Effective search space used: 431768160
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.2 bits)