Query psy15482
Match_columns 302
No_of_seqs 264 out of 1156
Neff 6.2
Searched_HMMs 29240
Date Fri Aug 16 22:14:33 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15482.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15482hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i1a_A DNA damage-inducible pr 99.9 2.4E-24 8.3E-29 181.3 6.6 97 190-286 1-97 (148)
2 3s8i_A Protein DDI1 homolog 1; 99.9 1.8E-23 6.3E-28 177.6 7.4 83 204-286 13-95 (148)
3 3phx_B Ubiquitin-like protein 99.8 1.3E-18 4.6E-23 131.0 10.0 73 1-75 5-77 (79)
4 2kk8_A Uncharacterized protein 99.8 1.2E-18 4E-23 134.2 9.0 72 1-74 11-83 (84)
5 4dwf_A HLA-B-associated transc 99.8 1.6E-18 5.4E-23 133.9 9.7 74 1-77 6-79 (90)
6 3plu_A Ubiquitin-like modifier 99.8 1.3E-18 4.4E-23 136.5 9.1 71 1-73 22-92 (93)
7 1uel_A HHR23B, UV excision rep 99.8 4.6E-18 1.6E-22 133.3 12.3 75 1-77 1-78 (95)
8 3m62_B UV excision repair prot 99.8 1.3E-18 4.4E-23 139.4 8.4 75 1-77 2-76 (106)
9 4fbj_B NEDD8; effector-HOST ta 99.8 3.7E-18 1.3E-22 132.0 10.3 74 1-76 1-74 (88)
10 1v5o_A 1700011N24RIK protein; 99.8 3.8E-18 1.3E-22 135.6 10.1 77 1-77 8-87 (102)
11 2wyq_A HHR23A, UV excision rep 99.7 6.8E-18 2.3E-22 128.5 10.3 74 1-76 6-82 (85)
12 1ndd_A NEDD8, protein (ubiquit 99.7 1E-17 3.6E-22 124.1 10.4 73 1-75 1-73 (76)
13 2faz_A Ubiquitin-like containi 99.7 7.7E-18 2.6E-22 126.4 9.6 73 1-75 3-77 (78)
14 3v6c_B Ubiquitin; structural g 99.7 6.9E-18 2.4E-22 130.9 9.6 73 1-75 18-90 (91)
15 1uh6_A Ubiquitin-like 5; beta- 99.7 3.2E-18 1.1E-22 136.2 7.3 71 1-73 29-99 (100)
16 3a9j_A Ubiquitin; protein comp 99.7 2.1E-17 7.1E-22 122.5 11.0 73 1-75 1-73 (76)
17 2lxa_A Ubiquitin-like protein 99.7 3.8E-18 1.3E-22 132.6 7.0 73 1-75 2-78 (87)
18 2bwf_A Ubiquitin-like protein 99.7 2.5E-17 8.7E-22 122.8 10.6 72 1-75 5-76 (77)
19 4eew_A Large proline-rich prot 99.7 1.3E-17 4.5E-22 128.2 9.3 71 1-74 18-88 (88)
20 3k9o_B Ubiquitin, UBB+1; E2-25 99.7 2.5E-17 8.5E-22 128.5 10.7 75 1-77 2-76 (96)
21 3dbh_I NEDD8; cell cycle, acti 99.7 1.2E-17 4.2E-22 127.7 8.6 73 1-75 13-85 (88)
22 3n3k_B Ubiquitin; hydrolase, p 99.7 1.6E-17 5.6E-22 126.1 9.2 74 1-76 4-77 (85)
23 1sif_A Ubiquitin; hydrophobic 99.7 2.6E-17 8.8E-22 127.2 10.1 73 1-75 10-82 (88)
24 1v2y_A 3300001G02RIK protein; 99.7 6.5E-18 2.2E-22 135.6 6.8 76 1-77 8-98 (105)
25 2dzi_A Ubiquitin-like protein 99.7 2.2E-17 7.4E-22 124.3 9.3 73 1-75 8-80 (81)
26 1oqy_A HHR23A, UV excision rep 99.7 3.7E-17 1.3E-21 157.2 13.0 74 1-76 8-85 (368)
27 4a20_A Ubiquitin-like protein 99.7 2E-17 6.8E-22 131.2 9.1 73 1-75 20-96 (98)
28 2uyz_B Small ubiquitin-related 99.7 1.4E-17 4.6E-22 125.5 7.8 73 1-75 4-76 (79)
29 3mtn_B UBA80, ubcep1, ubiquiti 99.7 3E-17 1E-21 124.5 9.6 74 1-76 4-77 (85)
30 4hcn_B Polyubiquitin, ubiquiti 99.7 2.9E-17 9.8E-22 129.4 9.8 73 1-75 23-95 (98)
31 2hj8_A Interferon-induced 17 k 99.7 1.4E-17 4.9E-22 128.6 7.7 74 1-76 5-78 (88)
32 1wh3_A 59 kDa 2'-5'-oligoadeny 99.7 3.5E-17 1.2E-21 125.2 9.7 74 1-76 8-81 (87)
33 1wy8_A NP95-like ring finger p 99.7 5.5E-17 1.9E-21 124.8 10.8 74 1-76 8-83 (89)
34 2kan_A Uncharacterized protein 99.7 4.5E-17 1.5E-21 127.8 9.8 74 1-76 16-89 (94)
35 1yx5_B Ubiquitin; proteasome, 99.7 1E-16 3.6E-21 125.9 11.2 74 1-76 1-74 (98)
36 1ttn_A DC-UBP, dendritic cell- 99.7 7E-17 2.4E-21 129.1 9.8 75 1-77 24-98 (106)
37 2klc_A Ubiquilin-1; ubiquitin- 99.7 1.1E-16 3.9E-21 127.0 10.4 73 1-76 26-98 (101)
38 1wyw_B Ubiquitin-like protein 99.7 5.1E-17 1.7E-21 127.9 8.2 73 1-75 22-94 (97)
39 1yqb_A Ubiquilin 3; structural 99.7 9E-17 3.1E-21 127.5 9.5 74 1-77 23-96 (100)
40 1wx7_A Ubiquilin 3; ubiquitin- 99.7 1.7E-16 5.7E-21 126.7 11.1 74 1-77 18-91 (106)
41 1wgd_A Homocysteine-responsive 99.7 1E-16 3.5E-21 124.9 9.1 74 1-76 8-87 (93)
42 3b1l_X E3 ubiquitin-protein li 99.5 2.8E-18 9.5E-23 128.1 0.0 73 1-75 1-73 (76)
43 1wx8_A Riken cDNA 4931431F19; 99.7 5.3E-17 1.8E-21 127.0 6.9 74 1-77 18-91 (96)
44 1wia_A Hypothetical ubiquitin- 99.7 2.8E-16 9.7E-21 122.7 10.8 73 1-77 8-80 (95)
45 1wxv_A BAG-family molecular ch 99.7 1.9E-16 6.5E-21 123.0 9.4 75 1-77 8-87 (92)
46 3vdz_A Ubiquitin-40S ribosomal 99.7 2.1E-16 7.2E-21 127.5 9.8 73 1-75 36-108 (111)
47 1wju_A NEDD8 ultimate buster-1 99.7 1.3E-16 4.5E-21 126.9 8.4 72 3-76 18-93 (100)
48 2l7r_A Ubiquitin-like protein 99.7 2.3E-16 7.8E-21 123.3 8.5 71 1-75 20-90 (93)
49 1v5t_A 8430435I17RIK protein; 99.7 2.8E-16 9.5E-21 122.1 8.8 73 1-76 8-84 (90)
50 3l0w_B Monoubiquitinated proli 99.6 7.2E-16 2.5E-20 133.3 11.5 75 1-77 1-75 (169)
51 1wgh_A Ubiquitin-like 3, HCG-1 99.6 6.1E-16 2.1E-20 126.2 10.0 75 1-77 17-101 (116)
52 1x1m_A Ubiquitin-like protein 99.6 5.5E-16 1.9E-20 124.2 9.5 75 1-77 13-102 (107)
53 1j8c_A Ubiquitin-like protein 99.6 5.3E-16 1.8E-20 127.9 9.7 74 1-77 33-106 (125)
54 2fnj_B Transcription elongatio 99.6 3.6E-16 1.2E-20 127.8 8.3 72 1-74 1-80 (118)
55 2ojr_A Ubiquitin; lanthide-bin 99.6 9.8E-16 3.3E-20 123.4 10.4 73 1-75 36-108 (111)
56 2daf_A FLJ35834 protein; hypot 99.6 7.3E-16 2.5E-20 125.4 9.5 74 3-77 16-91 (118)
57 4ajy_B Transcription elongatio 99.6 6.3E-16 2.1E-20 126.2 8.9 74 1-75 1-81 (118)
58 3rt3_B Ubiquitin-like protein 99.6 8.9E-16 3.1E-20 130.1 10.0 74 1-76 82-155 (159)
59 3m63_B Ubiquitin domain-contai 99.6 1.3E-16 4.5E-21 126.8 4.5 71 2-75 30-100 (101)
60 2kdb_A Homocysteine-responsive 99.6 3.6E-16 1.2E-20 124.1 6.7 70 1-72 24-99 (99)
61 2kdi_A Ubiquitin, vacuolar pro 99.6 1.7E-15 5.9E-20 122.8 10.7 74 1-76 10-83 (114)
62 2gow_A HCG-1 protein, ubiquiti 99.6 7.2E-16 2.5E-20 127.4 8.5 74 1-76 18-101 (125)
63 1wgg_A Ubiquitin carboxyl-term 99.6 1.5E-15 5E-20 119.7 9.8 72 1-76 8-80 (96)
64 2kd0_A LRR repeats and ubiquit 99.6 1.7E-15 5.9E-20 116.4 9.8 69 4-74 15-83 (85)
65 3rt3_B Ubiquitin-like protein 99.6 1.7E-15 5.9E-20 128.3 10.3 73 1-75 3-77 (159)
66 4dbg_A Ranbp-type and C3HC4-ty 99.6 2.6E-15 8.7E-20 120.4 10.5 75 1-76 25-101 (105)
67 1we6_A Splicing factor, putati 99.6 9E-16 3.1E-20 123.5 7.8 74 1-76 28-105 (111)
68 1v86_A DNA segment, CHR 7, way 99.6 7.6E-16 2.6E-20 120.9 6.8 72 1-76 18-89 (95)
69 3u30_A Ubiquitin, linear DI-ub 99.6 3E-15 1E-19 128.8 10.8 74 1-76 21-94 (172)
70 3b08_A Polyubiquitin-C, ubiqui 99.6 3.6E-15 1.2E-19 124.3 10.9 74 1-76 1-74 (152)
71 3u5e_m 60S ribosomal protein L 99.6 6.4E-17 2.2E-21 133.6 0.0 74 1-76 1-74 (128)
72 3q3f_A Ribonuclease/ubiquitin 99.6 1.5E-15 5.3E-20 133.6 8.6 74 1-76 106-179 (189)
73 1se9_A Ubiquitin family; ubiqu 99.6 4E-15 1.4E-19 122.9 9.4 74 1-76 17-104 (126)
74 3b08_A Polyubiquitin-C, ubiqui 99.6 1.4E-14 4.7E-19 120.8 10.6 73 1-75 77-149 (152)
75 1we7_A SF3A1 protein; structur 99.6 1E-14 3.5E-19 118.1 9.5 74 2-76 27-109 (115)
76 3u5c_f 40S ribosomal protein S 99.6 3.1E-16 1.1E-20 133.7 0.0 74 1-76 1-74 (152)
77 4b6w_A Tubulin-specific chaper 99.5 1.6E-14 5.3E-19 111.8 9.0 74 2-76 4-85 (86)
78 3u30_A Ubiquitin, linear DI-ub 99.5 1.1E-14 3.6E-19 125.4 8.8 73 1-75 97-169 (172)
79 2dzj_A Synaptic glycoprotein S 99.5 7.3E-15 2.5E-19 114.0 5.9 69 1-71 11-85 (88)
80 2kjr_A CG11242; UBL, ubiquitin 99.5 2.7E-14 9.3E-19 112.4 8.9 70 2-73 17-94 (95)
81 2kj6_A Tubulin folding cofacto 99.5 3.3E-14 1.1E-18 112.4 8.6 73 2-75 16-96 (97)
82 2dzm_A FAS-associated factor 1 99.5 2.6E-14 9E-19 113.6 6.4 72 1-75 9-82 (100)
83 1wf9_A NPL4 family protein; be 99.5 5.5E-14 1.9E-18 112.6 7.6 74 1-77 8-97 (107)
84 3ai5_A Yeast enhanced green fl 99.5 9.8E-14 3.3E-18 130.4 9.5 73 1-75 234-306 (307)
85 1v6e_A Cytoskeleton-associated 99.4 1.6E-13 5.6E-18 107.4 7.9 72 2-75 9-88 (95)
86 2xzm_9 RPS31E; ribosome, trans 99.4 1.8E-14 6.2E-19 126.6 0.0 68 1-75 1-68 (189)
87 2kzr_A Ubiquitin thioesterase 99.4 4.7E-13 1.6E-17 102.8 7.5 73 1-75 1-78 (86)
88 1t0y_A Tubulin folding cofacto 99.4 1.2E-12 4.1E-17 107.2 9.0 72 2-75 8-87 (122)
89 3shq_A UBLCP1; phosphatase, hy 99.3 1.2E-12 4E-17 123.9 7.4 73 2-77 7-82 (320)
90 1wjn_A Tubulin-folding protein 99.3 8.6E-12 2.9E-16 97.8 9.4 74 2-75 11-93 (97)
91 2io1_B Small ubiquitin-related 99.3 7.7E-12 2.6E-16 98.2 8.9 73 1-75 8-80 (94)
92 1wm3_A Ubiquitin-like protein 99.3 2E-11 6.9E-16 90.9 8.9 70 1-72 2-71 (72)
93 2io0_B Small ubiquitin-related 99.2 4.8E-11 1.7E-15 93.1 8.9 73 1-75 6-78 (91)
94 3a4r_A Nfatc2-interacting prot 99.2 8E-11 2.7E-15 89.3 9.0 70 1-72 8-78 (79)
95 2d07_B Ubiquitin-like protein 99.2 1.2E-10 4.2E-15 91.0 8.9 73 1-75 18-90 (93)
96 1wz0_A Ubiquitin-like protein 99.1 1.6E-10 5.4E-15 92.4 7.4 73 1-75 25-97 (104)
97 2k8h_A Small ubiquitin protein 99.0 2.2E-10 7.5E-15 92.4 6.0 73 1-75 27-99 (110)
98 2eke_C Ubiquitin-like protein 99.0 1.2E-09 3.9E-14 87.7 8.3 71 2-75 33-103 (106)
99 3kyd_D Small ubiquitin-related 98.7 1E-07 3.5E-12 77.3 9.5 71 2-74 42-112 (115)
100 2pjh_A Protein NPL4, nuclear p 98.5 5.1E-08 1.8E-12 74.0 4.3 71 1-73 5-79 (80)
101 3pge_A SUMO-modified prolifera 98.5 3.7E-07 1.3E-11 80.7 8.5 73 3-76 30-102 (200)
102 3tix_A Ubiquitin-like protein 98.4 4E-07 1.4E-11 79.9 7.4 73 2-75 57-129 (207)
103 4efo_A Serine/threonine-protei 98.2 2.9E-06 9.8E-11 66.4 7.1 71 4-74 16-88 (94)
104 3goe_A DNA repair protein RAD6 98.1 3E-05 1E-09 58.5 9.6 66 5-72 14-80 (82)
105 3v7o_A Minor nucleoprotein VP3 98.1 5.3E-07 1.8E-11 80.1 0.0 72 1-75 22-93 (227)
106 2jxx_A Nfatc2-interacting prot 98.0 3.7E-05 1.3E-09 60.4 8.9 68 3-72 28-96 (97)
107 2bps_A YUKD protein; ubiquitin 97.9 2.4E-05 8.2E-10 59.5 6.8 70 1-71 3-80 (81)
108 1fmb_A EIAV protease; hydrolas 97.8 2.4E-05 8.1E-10 62.2 5.9 67 214-283 7-73 (104)
109 2kc2_A Talin-1, F1; FERM, adhe 97.7 4.7E-05 1.6E-09 62.7 6.0 70 3-74 14-122 (128)
110 2al3_A TUG long isoform; TUG U 97.7 0.00016 5.5E-09 55.9 8.4 75 1-77 10-84 (90)
111 3uf8_A Ubiquitin-like protein 97.6 0.00013 4.5E-09 64.5 8.3 73 3-76 22-94 (209)
112 3slz_A GAG-Pro-POL polyprotein 97.6 3.8E-05 1.3E-09 63.6 3.9 65 213-285 20-84 (132)
113 3ix6_A TS, tsase, thymidylate 97.5 1.6E-05 5.4E-10 76.0 0.0 73 3-76 22-94 (360)
114 2l76_A Nfatc2-interacting prot 97.3 0.0011 3.6E-08 51.8 8.8 71 3-74 22-92 (95)
115 4da1_A Protein phosphatase 1K, 97.3 3E-05 1E-09 74.4 0.0 73 3-76 31-103 (389)
116 2hs1_A HIV-1 protease; ultra-h 97.2 0.0005 1.7E-08 54.1 5.7 60 215-283 8-68 (99)
117 3qx1_A FAS-associated factor 1 97.1 0.0021 7E-08 48.5 8.4 71 2-74 9-83 (84)
118 3ec0_A Protease; HIV-2, inhibi 97.1 0.00036 1.2E-08 55.0 3.7 28 214-241 7-34 (99)
119 2hah_A Protease, retropepsin; 97.0 0.0012 4.3E-08 53.3 6.1 27 215-242 14-40 (116)
120 2dzk_A UBX domain-containing p 96.9 0.0086 3E-07 47.5 10.3 74 2-76 15-92 (109)
121 2qsf_X RAD23, UV excision repa 96.4 0.0019 6.6E-08 55.5 3.7 48 109-157 26-80 (171)
122 2l32_A Small archaeal modifier 96.4 0.0066 2.3E-07 45.0 6.2 62 1-74 1-62 (74)
123 3ka2_A [L-Ala51;Gly51']HIV-1 p 96.4 0.0056 1.9E-07 54.0 6.3 60 215-283 8-68 (203)
124 1wj4_A KIAA0794 protein; UBX d 96.2 0.016 5.4E-07 47.1 8.0 72 2-75 45-120 (124)
125 1pve_A HHR23B, UV excision rep 96.1 0.0047 1.6E-07 45.8 3.9 39 117-156 17-59 (72)
126 1ryj_A Unknown; beta/alpha pro 96.1 0.047 1.6E-06 39.5 9.2 61 1-73 5-65 (70)
127 2f4m_B UV excision repair prot 95.9 0.0082 2.8E-07 43.1 4.3 45 111-156 7-57 (61)
128 2cr5_A Reproduction 8; UBX dom 95.8 0.051 1.7E-06 42.9 9.1 73 2-76 25-100 (109)
129 3sqf_A Protease; folded monome 95.8 0.0052 1.8E-07 49.5 3.2 27 216-242 10-36 (114)
130 1s3s_G P47 protein; AAA ATPase 95.3 0.049 1.7E-06 44.3 7.4 68 2-71 54-124 (127)
131 4a3p_A Ubiquitin carboxyl-term 94.8 0.084 2.9E-06 46.6 8.0 64 12-75 140-209 (217)
132 3jyu_A Ubiquitin carboxyl-term 94.7 0.13 4.4E-06 45.8 9.1 64 13-76 153-222 (231)
133 3ivf_A Talin-1; FERM domain, c 94.4 0.15 5.2E-06 48.0 9.2 69 3-74 6-84 (371)
134 3liy_A Protease; hydrolase, hy 94.3 0.025 8.4E-07 45.5 3.0 43 215-266 10-61 (116)
135 4e71_A Plexin-B2, MM1; transme 94.3 0.23 7.9E-06 39.6 8.6 65 10-74 22-110 (111)
136 3ka2_A [L-Ala51;Gly51']HIV-1 p 94.1 0.035 1.2E-06 48.9 3.7 27 215-241 112-138 (203)
137 2rsp_A RSV protease; hydrolase 94.0 0.02 6.8E-07 46.7 1.9 29 214-242 9-47 (124)
138 2kl0_A Putative thiamin biosyn 93.8 0.098 3.3E-06 38.4 5.2 62 1-75 1-62 (73)
139 1tyg_B YJBS; alpha beta barrel 93.8 0.11 3.8E-06 39.6 5.6 57 10-74 26-83 (87)
140 2k5p_A THis protein, thiamine- 93.3 0.13 4.6E-06 38.2 5.2 62 1-74 1-65 (78)
141 2daj_A KIAA0977 protein, COBL- 93.0 0.2 6.7E-06 38.2 5.7 67 2-73 12-81 (91)
142 1f0z_A THis protein; ubiquitin 92.9 0.11 3.8E-06 36.9 4.2 61 1-73 1-61 (66)
143 3rpf_C Molybdopterin convertin 92.7 0.45 1.5E-05 34.4 7.3 65 1-73 1-69 (74)
144 1oey_A P67-PHOX, neutrophil cy 92.3 0.23 7.8E-06 37.6 5.3 44 2-48 7-50 (83)
145 2jys_A Protease/reverse transc 91.4 0.095 3.3E-06 40.7 2.3 29 218-246 10-38 (107)
146 2r2o_A Plexin-B1; effector dom 91.0 0.82 2.8E-05 37.7 7.7 66 11-76 40-130 (138)
147 1vjk_A Molybdopterin convertin 90.5 1.1 3.9E-05 34.0 7.9 67 1-73 10-93 (98)
148 2juo_A GA-binding protein alph 88.4 1.5 5.1E-05 33.3 6.7 62 13-75 4-65 (89)
149 2cu3_A Unknown function protei 87.4 1.3 4.4E-05 31.1 5.7 55 10-73 5-59 (64)
150 3h6n_A Plexin-D1; structural g 87.1 2.9 9.9E-05 34.0 8.2 66 10-75 15-105 (127)
151 4eut_A Serine/threonine-protei 85.9 4.4 0.00015 37.5 10.2 66 9-74 319-386 (396)
152 4e74_A Plexin-A4; RBD, structu 85.9 2.2 7.4E-05 34.2 6.8 65 11-75 26-115 (117)
153 1y8x_B Ubiquitin-activating en 85.7 0.9 3.1E-05 35.3 4.4 62 12-73 5-83 (98)
154 2kvr_A Ubiquitin carboxyl-term 85.4 0.84 2.9E-05 37.1 4.3 33 14-46 58-90 (130)
155 1wgk_A Riken cDNA 2900073H19 p 85.3 4.9 0.00017 31.7 8.7 71 1-75 12-105 (114)
156 3qa8_A MGC80376 protein; kinas 84.6 0.91 3.1E-05 46.5 5.1 66 9-74 319-393 (676)
157 2qjl_A URM1, ubiquitin-related 84.2 5 0.00017 30.4 8.1 69 1-73 2-94 (99)
158 3dwg_C 9.5 kDa culture filtrat 82.4 4.2 0.00014 30.3 6.9 70 1-73 1-88 (93)
159 3kuz_A Plexin-C1; structural g 81.8 5.9 0.0002 32.1 7.8 63 12-74 39-126 (126)
160 2hj1_A Hypothetical protein; s 80.4 3.1 0.0001 32.1 5.5 67 1-73 13-84 (97)
161 3onh_A Ubiquitin-activating en 79.8 4.2 0.00014 33.0 6.3 59 15-74 9-79 (127)
162 2llw_A Heat shock protein STI1 78.7 8.6 0.00029 27.9 7.2 29 113-143 7-35 (71)
163 3po0_A Small archaeal modifier 78.2 9.1 0.00031 28.0 7.5 56 12-73 18-84 (89)
164 3ig3_A Plxna3 protein; plexin 76.4 11 0.00038 38.1 9.6 66 11-76 246-336 (627)
165 2lnm_A Protein TIC 40, chlorop 76.3 2.4 8.3E-05 29.8 3.5 12 120-131 6-17 (62)
166 2kmm_A Guanosine-3',5'-BIS(dip 76.3 5.2 0.00018 28.0 5.4 64 1-75 1-64 (73)
167 3hm6_X Plexin-B1; structural g 76.1 9.5 0.00032 38.7 8.9 65 12-76 274-363 (644)
168 2kmc_A Fermitin family homolog 75.9 26 0.00088 27.2 9.8 72 2-74 21-99 (102)
169 2q5w_D Molybdopterin convertin 75.7 4.1 0.00014 29.0 4.8 55 12-73 16-72 (77)
170 1fm0_D Molybdopterin convertin 75.1 6.9 0.00024 28.0 5.9 54 13-73 18-76 (81)
171 1lya_A Cathepsin D; lysosomal 72.9 3.9 0.00013 31.0 4.2 67 215-283 14-96 (97)
172 1vd2_A Protein kinase C, IOTA 72.5 15 0.00051 27.8 7.3 45 3-47 7-52 (89)
173 2g1e_A Hypothetical protein TA 70.9 14 0.00049 26.8 6.9 57 15-73 18-85 (90)
174 2l52_A Methanosarcina acetivor 68.7 13 0.00043 28.2 6.3 68 1-73 4-94 (99)
175 1rws_A Hypothetical protein PF 67.8 1.9 6.6E-05 31.3 1.4 48 15-72 24-71 (77)
176 1t6a_A Rbstp2229 gene product; 67.7 2.4 8.3E-05 34.0 2.0 45 256-301 64-110 (126)
177 3ivf_A Talin-1; FERM domain, c 67.5 23 0.00079 32.8 9.2 72 2-75 87-168 (371)
178 1ip9_A BEM1 protein; ubiquitin 67.1 8.4 0.00029 29.1 4.8 41 1-45 13-53 (85)
179 2ylm_A Ubiquitin carboxyl-term 63.4 6.4 0.00022 39.0 4.6 61 15-75 150-218 (530)
180 2inc_C TOUB protein; DIIRON, 4 63.1 45 0.0015 24.9 8.6 59 14-73 15-81 (83)
181 2l9b_A MRNA 3'-END-processing 62.0 6.2 0.00021 31.2 3.3 27 117-143 60-86 (109)
182 1ef1_A Moesin; membrane, FERM 61.5 39 0.0013 29.9 9.2 70 1-73 2-77 (294)
183 2ylm_A Ubiquitin carboxyl-term 60.5 6.8 0.00023 38.8 4.2 33 14-46 38-70 (530)
184 2k9x_A Tburm1, uncharacterized 60.4 3.2 0.00011 32.6 1.5 68 1-74 5-98 (110)
185 3qij_A Protein 4.1; cytoskelet 60.2 32 0.0011 30.9 8.4 72 1-74 18-95 (296)
186 3ggo_A Prephenate dehydrogenas 59.9 12 0.00043 34.0 5.6 46 112-157 256-305 (314)
187 3ktd_A Prephenate dehydrogenas 58.1 8.4 0.00029 35.9 4.2 45 112-157 235-283 (341)
188 1h4r_A Merlin; FERM, neurofibr 57.1 41 0.0014 30.2 8.6 68 2-72 24-96 (314)
189 1wgr_A Growth factor receptor- 57.0 19 0.00064 27.9 5.3 71 4-75 13-93 (100)
190 2lnm_A Protein TIC 40, chlorop 56.5 8.7 0.0003 26.8 3.1 10 123-132 18-27 (62)
191 3u52_E Phenol hydroxylase comp 56.4 44 0.0015 26.7 7.4 59 14-72 40-107 (119)
192 2llw_A Heat shock protein STI1 55.3 6.7 0.00023 28.5 2.3 19 112-132 17-35 (71)
193 2ns5_A Partitioning-defective 51.9 73 0.0025 23.9 8.7 69 1-73 3-81 (85)
194 1b5f_A Protein (cardosin A); h 50.5 14 0.00046 32.1 4.0 70 215-286 14-98 (239)
195 2g5c_A Prephenate dehydrogenas 50.5 29 0.00098 30.3 6.2 46 112-157 224-273 (281)
196 2i1j_A Moesin; FERM, coiled-co 49.6 54 0.0018 32.7 8.7 70 2-74 6-81 (575)
197 3ge3_C Toluene-4-monooxygenase 49.4 80 0.0027 23.6 9.0 59 14-73 17-82 (84)
198 1j0g_A Hypothetical protein 18 48.9 41 0.0014 25.2 5.7 61 14-75 26-87 (92)
199 2zjd_A Microtubule-associated 48.4 19 0.00064 29.1 4.2 58 16-74 57-119 (130)
200 1q1o_A Cell division control p 47.5 23 0.00079 27.3 4.4 29 11-39 22-50 (98)
201 2qsf_X RAD23, UV excision repa 46.9 6 0.00021 33.6 1.1 49 122-179 28-83 (171)
202 3hvz_A Uncharacterized protein 46.0 42 0.0014 24.4 5.5 62 2-74 7-68 (78)
203 1mpp_A Pepsin; hydrolase(acid 45.3 17 0.0006 33.2 4.1 71 215-287 19-104 (361)
204 3brv_B NF-kappa-B essential mo 44.1 32 0.0011 24.9 4.4 37 115-153 7-43 (70)
205 1v8c_A MOAD related protein; r 43.8 58 0.002 27.1 6.8 56 15-73 17-82 (168)
206 2dbs_A Hypothetical protein TT 43.4 51 0.0018 24.3 5.5 41 175-231 37-78 (90)
207 3qvc_A Histo-aspartic protease 43.0 19 0.00066 34.6 4.2 72 214-287 137-222 (451)
208 3b1f_A Putative prephenate deh 42.9 46 0.0016 29.1 6.4 46 112-157 232-281 (290)
209 3hrd_D Nicotinate dehydrogenas 42.5 23 0.0008 29.5 4.1 26 1-28 4-29 (160)
210 1pve_A HHR23B, UV excision rep 42.4 16 0.00055 26.6 2.6 32 121-153 8-46 (72)
211 4gmv_A RAS-associated and plec 40.9 40 0.0014 30.6 5.7 36 4-40 35-70 (281)
212 1rm6_C 4-hydroxybenzoyl-COA re 40.7 24 0.00081 29.3 3.8 30 1-30 1-30 (161)
213 2r2q_A Gamma-aminobutyric acid 40.5 25 0.00087 27.3 3.8 46 16-61 48-93 (110)
214 1n62_A Carbon monoxide dehydro 40.2 27 0.00092 29.2 4.1 27 1-29 4-30 (166)
215 2pma_A Uncharacterized protein 39.9 7.3 0.00025 32.3 0.5 36 209-246 4-39 (146)
216 3w1s_C Ubiquitin-like protein 38.5 55 0.0019 24.7 5.2 72 2-75 8-86 (91)
217 1eo6_A GATE-16, golgi-associat 37.6 29 0.001 27.3 3.7 59 17-75 50-111 (117)
218 2c7h_A RBBP6, retinoblastoma-b 37.5 1.3E+02 0.0044 22.5 8.1 43 3-45 9-52 (86)
219 1oqy_A HHR23A, UV excision rep 37.1 67 0.0023 30.3 6.7 39 117-156 248-290 (368)
220 2nvu_B Maltose binding protein 36.8 62 0.0021 33.1 7.1 61 13-73 713-790 (805)
221 2bkf_A Zinc-finger protein NBR 35.8 85 0.0029 23.6 5.8 42 3-46 7-50 (87)
222 1ffv_A CUTS, iron-sulfur prote 35.8 35 0.0012 28.4 4.1 26 2-29 5-30 (163)
223 1t3q_A Quinoline 2-oxidoreduct 35.4 35 0.0012 28.3 4.1 27 1-29 10-36 (168)
224 3m95_A Autophagy related prote 35.4 34 0.0012 27.5 3.8 58 16-75 57-119 (125)
225 2x0b_A Renin; hydrolase-hormon 34.6 34 0.0012 31.9 4.3 72 214-287 61-148 (383)
226 1yg9_A Aspartic protease BLA G 34.4 30 0.001 31.3 3.8 71 215-287 18-101 (330)
227 3cms_A Chymosin B; hydrolase, 34.3 27 0.00093 31.4 3.4 70 215-286 15-98 (323)
228 1bxo_A Protein (penicillopepsi 32.1 37 0.0013 30.5 4.0 72 215-287 16-98 (323)
229 2llv_A Heat shock protein STI1 31.6 11 0.00037 27.1 0.2 28 124-155 11-38 (71)
230 4a6q_A Histone deacetylase com 31.5 49 0.0017 27.2 4.2 62 14-75 56-139 (143)
231 1wgy_A RAP guanine nucleotide 31.3 1.6E+02 0.0053 22.8 6.9 66 10-76 18-88 (104)
232 1b5f_A Protein (cardosin A); h 31.2 33 0.0011 29.6 3.3 28 220-247 197-231 (239)
233 3k1w_A Renin; protease, altern 31.0 28 0.00097 31.3 3.0 70 215-286 19-104 (341)
234 1tzs_A Cathepsin E; hydrolase, 30.9 34 0.0012 31.1 3.6 70 215-286 24-107 (351)
235 3rui_B Autophagy-related prote 30.9 52 0.0018 26.0 4.2 57 17-74 52-112 (118)
236 3r8s_T 50S ribosomal protein L 30.2 58 0.002 24.6 4.2 40 11-50 27-67 (93)
237 3hk0_A Growth factor receptor- 29.8 74 0.0025 28.4 5.5 51 3-54 11-68 (256)
238 4gdk_A Ubiquitin-like protein 29.5 53 0.0018 24.7 3.8 58 16-75 24-86 (91)
239 1wj6_A KIAA0049 protein, RSGI 29.5 90 0.0031 24.1 5.1 42 3-46 15-58 (101)
240 2k7r_A Primosomal protein DNAI 29.4 30 0.001 26.5 2.5 39 116-155 22-61 (106)
241 4aa9_A Chymosin; hydrolase, as 29.2 35 0.0012 30.5 3.2 71 215-287 12-96 (320)
242 1qdm_A Prophytepsin; aspartic 29.2 58 0.002 31.4 5.0 72 214-287 52-138 (478)
243 1pqs_A Cell division control p 29.2 47 0.0016 24.3 3.4 27 12-38 2-28 (77)
244 2w9y_A CE-FAR-7, fatty acid/re 29.0 75 0.0026 26.0 4.9 58 114-192 31-94 (140)
245 3pvk_A Candidapepsin-2; hydrol 29.0 34 0.0012 30.8 3.2 72 215-287 13-107 (342)
246 1lya_B Cathepsin D; lysosomal 28.9 38 0.0013 28.9 3.3 30 219-248 107-142 (241)
247 3au4_A Myosin-X; protein-prote 28.8 1E+02 0.0034 30.1 6.8 44 2-46 218-263 (555)
248 2bju_A Plasmepsin II; aspartic 28.3 45 0.0015 32.1 4.0 71 214-286 138-222 (453)
249 1dpj_A Proteinase A; proteinas 28.2 31 0.001 31.1 2.7 71 215-287 14-98 (329)
250 3tca_A Amyloid beta A4 precurs 27.9 1E+02 0.0036 26.6 6.2 33 9-41 42-74 (291)
251 3h9d_A ATG8, microtubule-assoc 27.8 48 0.0016 26.3 3.4 57 17-75 53-114 (119)
252 3fv3_A SAPP1P-secreted asparti 27.5 36 0.0012 30.6 3.0 72 215-287 13-101 (339)
253 1vq8_S 50S ribosomal protein L 26.5 67 0.0023 23.9 3.9 33 11-43 22-54 (85)
254 2pv7_A T-protein [includes: ch 26.2 1E+02 0.0035 27.3 5.8 45 113-157 222-269 (298)
255 3cms_A Chymosin B; hydrolase, 26.1 53 0.0018 29.4 3.9 30 219-248 197-232 (323)
256 2lgx_A Fermitin family homolog 25.8 65 0.0022 25.3 3.7 62 12-73 36-101 (112)
257 2cu1_A Mitogen-activated prote 25.7 90 0.0031 24.2 4.5 45 3-50 9-53 (103)
258 1wkr_A Polyporopepsin; hydrola 25.5 50 0.0017 29.8 3.7 67 215-286 13-84 (340)
259 2zjr_Q 50S ribosomal protein L 24.8 69 0.0024 24.3 3.7 36 14-49 25-61 (95)
260 3lxf_A Ferredoxin; iron, iron- 24.4 76 0.0026 23.9 4.0 25 2-27 2-26 (104)
261 2qzx_A Candidapepsin-5; aspart 24.2 49 0.0017 29.8 3.3 71 215-286 13-106 (342)
262 1miq_A Plasmepsin; aspartic pr 24.0 25 0.00086 32.6 1.3 72 214-287 62-147 (375)
263 1wmh_B Partitioning defective- 23.4 1.9E+02 0.0065 21.6 5.9 45 3-47 7-53 (86)
264 2v1y_A Phosphatidylinositol-4, 23.0 1.1E+02 0.0037 23.9 4.6 71 3-74 20-104 (108)
265 1j71_A Candidapepsin, aspartic 22.8 50 0.0017 29.8 3.0 71 215-286 13-106 (334)
266 1am5_A Pepsin, acid proteinase 22.3 71 0.0024 28.5 4.0 70 215-286 13-96 (324)
267 3aup_A SBG7S, BG, basic 7S glo 21.8 62 0.0021 30.1 3.6 29 220-248 237-281 (403)
268 1wkr_A Polyporopepsin; hydrola 21.7 71 0.0024 28.7 3.9 31 218-248 193-228 (340)
269 3pvl_A Myosin VIIA isoform 1; 21.3 1.1E+02 0.0037 31.0 5.5 45 1-46 264-309 (655)
270 2qzx_A Candidapepsin-5; aspart 21.0 76 0.0026 28.5 3.9 30 219-248 201-234 (342)
271 3tve_T 50S ribosomal protein L 20.8 1E+02 0.0035 23.2 4.0 40 11-50 21-61 (92)
272 2ewy_A Beta-secretase 2; BACE2 20.6 50 0.0017 30.2 2.6 30 219-248 203-242 (383)
273 3j21_T 50S ribosomal protein L 20.4 1.1E+02 0.0038 22.8 4.0 34 11-44 23-56 (86)
274 1tzs_A Cathepsin E; hydrolase, 20.4 80 0.0027 28.6 3.9 30 219-248 209-244 (351)
275 1j71_A Candidapepsin, aspartic 20.3 81 0.0028 28.3 3.9 29 220-248 202-234 (334)
276 3fv3_A SAPP1P-secreted asparti 20.3 73 0.0025 28.5 3.6 29 220-248 204-236 (339)
277 3zqe_A Protein PRGI, cell inva 20.2 4.2E+02 0.014 24.3 8.6 56 147-202 11-66 (305)
278 3pvk_A Candidapepsin-2; hydrol 20.2 82 0.0028 28.2 3.9 30 219-248 200-234 (342)
No 1
>2i1a_A DNA damage-inducible protein DDI1; acid protease fold, dimer, retroviral protease domain, protein turnover; HET: DNA; 2.30A {Saccharomyces cerevisiae}
Probab=99.90 E-value=2.4e-24 Score=181.29 Aligned_cols=97 Identities=47% Similarity=0.793 Sum_probs=62.0
Q ss_pred HHHhhHHHHHHHHHHhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcce
Q psy15482 190 IKKNNIEANMEAAMEYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQK 269 (302)
Q Consensus 190 i~q~~i~~n~~~A~E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~ 269 (302)
|||++|+|||++|+|++||.|.+..++||+|+|||++++|+|||||+.++||.++|++|||....+.++.+.+.|+|..+
T Consensus 1 ~~~~~i~~~~~~a~e~~p~~~~~~~~~~v~v~InG~~~~~LvDTGAs~s~is~~~a~~lgl~~~~~~~~~~~a~g~g~~~ 80 (148)
T 2i1a_A 1 MKQQAIDEQLRNAIEYTPEMFTQVPMLYINIEINNYPVKAFVDTGAQTTIMSTRLAKKTGLSRMIDKRFIGEARGVGTGK 80 (148)
T ss_dssp ----------------------CCCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHHTGGGGCBCCCC----------
T ss_pred CcHHHHHHHHHhhhhhCchhhcccceEEEEEEECCEEEEEEEECCCCccccCHHHHHHcCCCccCCcceEEEEecCCCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred eeeEEEEeeeeeccccc
Q psy15482 270 ILGRIHMAIAELTNFNG 286 (302)
Q Consensus 270 i~G~i~~~~~~ig~~~~ 286 (302)
+.|+++...++||++..
T Consensus 81 ~~~~~~~~~i~ig~~~~ 97 (148)
T 2i1a_A 81 IIGRIHQAQVKIETQYI 97 (148)
T ss_dssp -CEEEEEEEEEETTEEE
T ss_pred cccEEEEEEEEECCEEe
Confidence 99999999999999874
No 2
>3s8i_A Protein DDI1 homolog 1; protease, structural genomics, structural genomics consortiu retropepsin-like domain, protein turnover, hydrolase; 1.70A {Homo sapiens}
Probab=99.88 E-value=1.8e-23 Score=177.61 Aligned_cols=83 Identities=63% Similarity=0.998 Sum_probs=69.5
Q ss_pred HhCCCCcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecc
Q psy15482 204 EYNPETFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283 (302)
Q Consensus 204 E~~PE~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~ 283 (302)
-.-||+|+++.|+||+|+|||++++|||||||++|+||.+||+||||.+++|+||.|++.|+|+.++.|+||.++|+||+
T Consensus 13 ~~~~~~~~~~~~l~v~~~Ing~~v~~LVDTGAs~s~Is~~~A~rlGL~~~~~~~~~~~a~g~G~~~~~g~v~~~~I~Ig~ 92 (148)
T 3s8i_A 13 GLVPRGSGQVTMLYINCKVNGHPLKAFVDSGAQMTIMSQACAERCNIMRLVDRRWAGVAKGVGTQRIIGRVHLAQIQIEG 92 (148)
T ss_dssp ---------CCCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHTTCGGGEEGGGCEECCC---CEEEEEEEEEEEEETT
T ss_pred CcCceeccccCEEEEEEEECCEEEEEEEeCCCCcEeeCHHHHHHcCCccccCcceeEEEEcCCccEEEEEEEEEEEEECC
Confidence 34699999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccc
Q psy15482 284 FNG 286 (302)
Q Consensus 284 ~~~ 286 (302)
+++
T Consensus 93 ~~~ 95 (148)
T 3s8i_A 93 DFL 95 (148)
T ss_dssp EEE
T ss_pred EEE
Confidence 875
No 3
>3phx_B Ubiquitin-like protein ISG15; OTU domain, DE-ubiquitinase, DE-isgylase, hydrolase-protein complex; 1.60A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=131.01 Aligned_cols=73 Identities=15% Similarity=0.175 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus 5 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~l~l~~rl 77 (79)
T 3phx_B 5 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRL 77 (79)
T ss_dssp EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECC
T ss_pred EEEEEEe-CCCCEEEEEECCcChHHHHHHHHHhhcCCCHHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence 7999999 9999999999999999999999999999999999999999999996 99999999999999998764
No 4
>2kk8_A Uncharacterized protein AT4G05270; solution arabidopsis thaliana, uncharacterized putative protein, NESG, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.77 E-value=1.2e-18 Score=134.17 Aligned_cols=72 Identities=21% Similarity=0.216 Sum_probs=69.6
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee-cCCCcccccccCCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL-LQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~-L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
|+|+|++ .+|+.++++|++++||++||++|+..+|+|+++|+|+|+|++ |+|+ +||++|||++|++|+|+.+
T Consensus 11 ~~i~vk~-l~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~lL~D~-~tL~~y~I~~gs~i~lv~~ 83 (84)
T 2kk8_A 11 MKFLVEN-LNGSSFELEVDYRDTLLVVKQKIERSQHIPVSKQTLIVDGIVILRED-LTVEQCQIVPTSDIQLEVS 83 (84)
T ss_dssp EEEEEEE-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCCSS-SBHHHHTCCTTSCEEEEEC
T ss_pred eEEEEEe-cCCcEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEEecCCc-CCHHHcCCCCCCEEEEEEc
Confidence 8999999 999999999999999999999999999999999999999999 9886 9999999999999999875
No 5
>4dwf_A HLA-B-associated transcript 3; ubiquitin-like domain, BAT3 protein, PF00240, structural GEN joint center for structural genomics, JCSG; 1.80A {Homo sapiens} PDB: 1wx9_A
Probab=99.76 E-value=1.6e-18 Score=133.88 Aligned_cols=74 Identities=22% Similarity=0.364 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.++++|++++||.+||++|+.++|+|+++|+|+|+|+.|+|+ +||++||| +|++|||+.+.++
T Consensus 6 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~d~-~tL~~~~i-~g~~i~l~~~~~~ 79 (90)
T 4dwf_A 6 LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVERAPP 79 (90)
T ss_dssp EEEEEEE-TTCCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEECCCC
T ss_pred EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCeECCCC-CCHHHcCC-CCcEEEEEecCCC
Confidence 8999999 9999999999999999999999999999999999999999999996 99999999 8999999998654
No 6
>3plu_A Ubiquitin-like modifier HUB1; ubiquitin-like, HUB-1, SNU66, peptide binding protein; 1.40A {Saccharomyces cerevisiae} PDB: 3plv_A 1m94_A 1p0r_A
Probab=99.76 E-value=1.3e-18 Score=136.54 Aligned_cols=71 Identities=18% Similarity=0.264 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|+|++ .+|++++++|+|++||.+||++|++++|+|+++|+|+|.|++|+|+ .||++|||++|++|+|..
T Consensus 22 IqI~Vk~-~~Gkk~~v~v~p~DTI~~LK~~I~~k~Gip~~qQrLif~Gk~LkD~-~TL~dY~I~dgstLhL~~ 92 (93)
T 3plu_A 22 IEVVVND-RLGKKVRVKCLGEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDH-ISLEDYEVHDQTNLELYY 92 (93)
T ss_dssp EEEEEEC-TTSCEEEEEEETTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCcCHHHHHHHHHHHHhCCCHHHEEEEeCCEEccCc-CCHHHcCCCCCCEEEEEe
Confidence 6899999 9999999999999999999999999999999999999999999997 999999999999999853
No 7
>1uel_A HHR23B, UV excision repair protein RAD23 homolog B; UBL, UIM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.76 E-value=4.6e-18 Score=133.30 Aligned_cols=75 Identities=21% Similarity=0.393 Sum_probs=71.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+.. +|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+.
T Consensus 1 M~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~~i~l~~~~~~ 78 (95)
T 1uel_A 1 MQVTLKT-LQQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDD-TALKEYKIDEKNFVVVMVTKPK 78 (95)
T ss_dssp CEEEEEE-TTCCEEEEECCTTSBHHHHHHHHHHHHCTTTCCTTTEEEEETTEECCTT-SBGGGGTCCSSSEEEEEESSCC
T ss_pred CEEEEEe-CCCCEEEEEECCCCHHHHHHHHHHhhcccCCCChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEeCCC
Confidence 9999999 89999999999999999999999999 89999999999999999986 9999999999999999887654
No 8
>3m62_B UV excision repair protein RAD23; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.76 E-value=1.3e-18 Score=139.45 Aligned_cols=75 Identities=23% Similarity=0.301 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.++|+|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+.
T Consensus 2 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~i~~g~~i~lv~~~~~ 76 (106)
T 3m62_B 2 VSLTFKN-FKKEKVPLDLEPSNTILETKTKLAQSISCEESQIKLIYSGKVLQDS-KTVSECGLKDGDQVVFMVSQKK 76 (106)
T ss_dssp -CEEEEC-TTCCEEEECCCTTSBHHHHHHHHHHTTTSCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECCC--
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCEECCCc-CCHHHcCCCCCCEEEEEEcCCC
Confidence 8999999 9999999999999999999999999999999999999999999996 9999999999999999987654
No 9
>4fbj_B NEDD8; effector-HOST target complex, glutamine deamidase, deamidati bacterial effector, cell cycle-protein binding complex; 1.60A {Homo sapiens} PDB: 4f8c_B
Probab=99.75 E-value=3.7e-18 Score=132.03 Aligned_cols=74 Identities=23% Similarity=0.295 Sum_probs=71.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus 1 M~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~l~l~~rl~ 74 (88)
T 4fbj_B 1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLALR 74 (88)
T ss_dssp CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTTTTTCCTTCEEEEECBCC
T ss_pred CEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChhHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEECC
Confidence 9999999 9999999999999999999999999999999999999999999996 999999999999999998764
No 10
>1v5o_A 1700011N24RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.75 E-value=3.8e-18 Score=135.63 Aligned_cols=77 Identities=38% Similarity=0.635 Sum_probs=69.7
Q ss_pred CEEEEEeCCCC---eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTN---ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g---~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++...+ +.++++|++++||++||++|+.++|||+++|+|+|+|++|.|+.+||++|||++|++|+|+.+...
T Consensus 8 m~I~Vk~~~~~~~~~~~~i~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~gk~L~D~~~tL~~ygI~~g~~l~l~~~~~g 87 (102)
T 1v5o_A 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCSLGSYGLKDGDMVVLLQKDNV 87 (102)
T ss_dssp EEEEEEECCCCCCCCEEEEEECTTCBHHHHHHHHHHHTCCCGGGBCEEETTEEECCSSSBHHHHTCCTTEEEEECBCCCC
T ss_pred EEEEEEECCCCcCceEEEEEcCCCCCHHHHHHHHHHHHCcChHHeEEEECCEECCCCcccHHHCCCCCCCEEEEEECCCC
Confidence 79999993233 799999999999999999999999999999999999999988657999999999999999887654
No 11
>2wyq_A HHR23A, UV excision repair protein RAD23 homolog A; DNA binding protein, DNA excision repair, proteasomal degrad polyubiquitin; 1.65A {Homo sapiens} PDB: 1p98_A 1p9d_U 1p1a_A
Probab=99.74 E-value=6.8e-18 Score=128.55 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+.. +|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+
T Consensus 6 m~i~vk~-~~g~~~~~~v~~~~TV~~lK~~i~~~~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~~~~ 82 (85)
T 2wyq_A 6 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTKT 82 (85)
T ss_dssp EEEEEEE-TTSCEEEEEECTTSBHHHHHHHHHHHHCTTTCCGGGEEEEETTEECCTT-SBGGGGCCCTTSEEEEEEC--
T ss_pred EEEEEEE-CCCCEEEEEECCCCCHHHHHHHHHhhccccCCCHHHeEEEECCEECcCC-CCHHHcCCCCCCEEEEEEcCC
Confidence 7899999 88999999999999999999999998 89999999999999999986 999999999999999998764
No 12
>1ndd_A NEDD8, protein (ubiquitin-like protein NEDD8); proteolysis, signaling protei; 1.60A {Homo sapiens} SCOP: d.15.1.1 PDB: 1r4m_I 1r4n_I* 1xt9_B 2ko3_A 3gzn_I* 2bkr_B 2nvu_I* 3dqv_A 1bt0_A
Probab=99.74 E-value=1e-17 Score=124.08 Aligned_cols=73 Identities=23% Similarity=0.300 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+++.+.
T Consensus 1 M~i~vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 1ndd_A 1 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLAL 73 (76)
T ss_dssp CEEEEEC-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECC
T ss_pred CEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 9999999 8899999999999999999999999999999999999999999886 89999999999999998764
No 13
>2faz_A Ubiquitin-like containing PHD and ring finger DOM protein 1; cell cycle, DNA damage, DNA repair, DNA-binding, ligase, Met binding, nuclear protein; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.74 E-value=7.7e-18 Score=126.37 Aligned_cols=73 Identities=16% Similarity=0.111 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCeEE-EEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECF-LLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~-~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.+ +++ |++++||++||+.|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 3 m~i~Vk~-~~g~~~~~l~~v~~~~tv~~lK~~i~~~~gip~~~qrL~~~g~~L~d~-~tL~~~~i~~g~~i~l~~r~ 77 (78)
T 2faz_A 3 MWIQVRT-MDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLFDYEVRLNDTIQLLVRQ 77 (78)
T ss_dssp EEEEEEE-TTSSCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEE-CCCCEEEEEeccCCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEeC
Confidence 8999999 888874 999 9999999999999999999999999999999999986 99999999999999998874
No 14
>3v6c_B Ubiquitin; structural genomics, structural genomics consortium, SGC, UB protease, hydrolase-signaling protein complex; 1.70A {Homo sapiens} PDB: 3v6e_B
Probab=99.74 E-value=6.9e-18 Score=130.91 Aligned_cols=73 Identities=29% Similarity=0.331 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus 18 m~i~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~rl 90 (91)
T 3v6c_B 18 MQIFVNT-LTGTHITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 90 (91)
T ss_dssp EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBTGGGTCCTTCEEEEECCC
T ss_pred EEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhhEEEEECCeECCCc-CcHHHCCCCCCCEEEEEEec
Confidence 8999999 8999999999999999999999999999999999999999999996 99999999999999998763
No 15
>1uh6_A Ubiquitin-like 5; beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.73 E-value=3.2e-18 Score=136.21 Aligned_cols=71 Identities=17% Similarity=0.207 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|+|++ .+|+.++|+|++++||.+||++|+.++|+|+++|+|+|.|++|+|+ .||++|||++|++|+|+.
T Consensus 29 m~I~VKt-l~Gk~i~lev~p~dTV~~lK~~Ia~k~Gip~~qQrLi~~Gk~L~D~-~TL~dygI~~gstlhL~~ 99 (100)
T 1uh6_A 29 IEVVCND-RLGKKVRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIFKDH-VSLGDYEIHDGMNLELYY 99 (100)
T ss_dssp EEEEEEC-SSSSCEEEEEETTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCSS-CBHHHHTCCTTEEEEEEC
T ss_pred EEEEEEC-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEe
Confidence 7899999 8899999999999999999999999999999999999999999986 999999999999999964
No 16
>3a9j_A Ubiquitin; protein complex, cytoplasm, isopeptide bond, metal-binding, zinc; 1.18A {Mus musculus} PDB: 3a1q_B 2znv_B 3a9k_A 3h7p_A 3jsv_A 3dvg_Y 3dvn_Y 3nob_A 2o6v_D* 3jw0_X 3jvz_X 3nhe_B* 1aar_A 1d3z_A 1f9j_A 1fxt_B 1g6j_A 1nbf_C 1cmx_B 1q5w_B ...
Probab=99.73 E-value=2.1e-17 Score=122.45 Aligned_cols=73 Identities=29% Similarity=0.333 Sum_probs=70.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+++.+.
T Consensus 1 M~i~vk~-~~g~~~~i~v~~~~tv~~lK~~i~~~~~i~~~~q~L~~~g~~L~d~-~tL~~~~i~~g~~i~l~~~~ 73 (76)
T 3a9j_A 1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQRESTLHLVLRL 73 (76)
T ss_dssp CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEECC
T ss_pred CEEEEEc-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 9999999 8899999999999999999999999999999999999999999886 99999999999999998875
No 17
>2lxa_A Ubiquitin-like protein MDY2; ubiquitin-like domain, protein-protein interaction, SGT2 BIN domain, GET pathway, protein binding; NMR {Saccharomyces cerevisiae}
Probab=99.73 E-value=3.8e-18 Score=132.55 Aligned_cols=73 Identities=14% Similarity=0.155 Sum_probs=68.3
Q ss_pred CEEEEEeCCCCeEEEEEeC--CCccHHHHHHHH-HhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVS--EDLELENFKAFC-EVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~--~~~TV~dLK~~I-e~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~ 75 (302)
|+|+||+ .+|++++++|+ +++||.+||++| +...|+|+++|+|+|+||+|+|+ .||++||| ++|++|+|..++
T Consensus 2 mqI~VKt-l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~~~stl~v~~~~ 78 (87)
T 2lxa_A 2 VHLTLKK-IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKP 78 (87)
T ss_dssp CEEEEEE-CSSSCEECCEECCTTCBHHHHHHHHHHTTSCSSSTTEEEEETTEECCTT-CBHHHHCCCGGGCEEEEEECC
T ss_pred EEEEEEc-CCCCEEEEEEcCCCCCcHHHHHHHHHHHhcCCChHHEEEEECCEECcCc-CCHHHcCCCCCCCEEEEEcCC
Confidence 8999999 99998888755 999999999999 99999999999999999999996 99999999 699999998875
No 18
>2bwf_A Ubiquitin-like protein DSK2; signaling protein, UBA, signaling proteins; 1.15A {Saccharomyces cerevisiae} SCOP: d.15.1.1 PDB: 2bwe_S
Probab=99.72 E-value=2.5e-17 Score=122.78 Aligned_cols=72 Identities=21% Similarity=0.397 Sum_probs=67.7
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ +|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 5 m~i~vk~--~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~ 76 (77)
T 2bwf_A 5 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKSQ 76 (77)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECC
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHhCCCHHHEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEEcC
Confidence 6788887 788999999999999999999999999999999999999999986 99999999999999998764
No 19
>4eew_A Large proline-rich protein BAG6; ubiquitin-like fold, GP78-binding, chaperone; 1.30A {Homo sapiens}
Probab=99.72 E-value=1.3e-17 Score=128.16 Aligned_cols=71 Identities=23% Similarity=0.389 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+.++|+|+++|+|+|+|+.|+|+ .||++||| +|++|||+.|
T Consensus 18 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i-~g~~i~lv~R 88 (88)
T 4eew_A 18 LEVLVKT-LDSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQEYNV-GGKVIHLVER 88 (88)
T ss_dssp EEEEEEE-TTSCEEEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTC-TTEEEEEEEC
T ss_pred EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCC-CcHHHcCC-CCcEEEEEEC
Confidence 7899999 8999999999999999999999999999999999999999999996 99999999 8999999864
No 20
>3k9o_B Ubiquitin, UBB+1; E2-25K, complex structure, ATP-binding, isopeptide BO ligase, nucleotide-binding, UBL conjugation pathway; 1.80A {Homo sapiens} PDB: 2k25_A 2kx0_A
Probab=99.72 E-value=2.5e-17 Score=128.45 Aligned_cols=75 Identities=28% Similarity=0.310 Sum_probs=71.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ .||++|||++|++|+|+.+...
T Consensus 2 m~i~vk~-~~g~~~~~~v~~~~TV~~LK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~r~~g 76 (96)
T 3k9o_B 2 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRG 76 (96)
T ss_dssp CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCCC
T ss_pred cEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHhhhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEEcCC
Confidence 8999999 8999999999999999999999999999999999999999999986 8999999999999999987643
No 21
>3dbh_I NEDD8; cell cycle, activating enzyme, apoptosis, membrane, UBL conjugation pathway, ATP-binding, ligase, nucleotide- binding, polymorphism; 2.85A {Homo sapiens} SCOP: d.15.1.1 PDB: 3dbr_I 3dbl_I
Probab=99.72 E-value=1.2e-17 Score=127.75 Aligned_cols=73 Identities=23% Similarity=0.295 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 13 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~G~~L~d~-~tL~~~~i~~~~~i~l~~rl 85 (88)
T 3dbh_I 13 MLIKVKT-LTGKEIEIDIEPTDKVERIKERVEEKEGIPPQQQRLIYSGKQMNDE-KTAADYKILGGSVLHLVLRL 85 (88)
T ss_dssp EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBGGGGTCCTTCEEEECCCC
T ss_pred EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 7999999 8999999999999999999999999999999999999999999996 99999999999999998764
No 22
>3n3k_B Ubiquitin; hydrolase, protease, thiol protease, DUB, zinc ribbon, inhibitor, ubiqu acetylation, cytoplasm, isopeptide bond, nucleus; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=1.6e-17 Score=126.12 Aligned_cols=74 Identities=26% Similarity=0.354 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+..
T Consensus 4 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~ip~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~rl~ 77 (85)
T 3n3k_B 4 MRIVVKT-LMGRTIILEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIHNHSALYLLLKLR 77 (85)
T ss_dssp CEEEEEC-GGGCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETBEECCTT-CBTTTTTCCTTCEEEEEECCC
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCCHHHEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEecc
Confidence 8999999 8899999999999999999999999999999999999999999986 899999999999999998864
No 23
>1sif_A Ubiquitin; hydrophobic mutants, folding, stability, structural protein; 2.18A {Homo sapiens} SCOP: d.15.1.1
Probab=99.72 E-value=2.6e-17 Score=127.25 Aligned_cols=73 Identities=25% Similarity=0.341 Sum_probs=69.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus 10 ~~i~v~~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~r~ 82 (88)
T 1sif_A 10 LQLFIKT-LTGKTFTVEMEPSDTIENLKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 82 (88)
T ss_dssp CEEEEEE-TTSCEEEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBSGGGTCCTTCEEEEEC--
T ss_pred eEEEEEe-CCCCEEEEEECCCChHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 8999999 9999999999999999999999999999999999999999999986 99999999999999998775
No 24
>1v2y_A 3300001G02RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.72 E-value=6.5e-18 Score=135.65 Aligned_cols=76 Identities=18% Similarity=0.198 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC---------------CCeEEEECCeecCCCcccccccCCCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA---------------HEIAIEFQGVLLQDNKKTLKTHGIQD 65 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~---------------~~Q~Li~~Gk~L~D~~~TL~~~gI~d 65 (302)
|+|+|++ ++|+.++|+|++++||++||+.|+.++|+|+ ++|+|+|+|++|.|+++||++|||++
T Consensus 8 M~I~Vk~-l~g~~~~v~V~~~~TV~dLK~~I~~~~~i~~~~q~g~~~isw~~~w~q~~Li~~Gk~L~dD~~tL~dygI~~ 86 (105)
T 1v2y_A 8 MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLTSAGEKLTEDRKKLRDYGIRN 86 (105)
T ss_dssp EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHTTEEEESSSCEECCSSSBHHHHTCCS
T ss_pred EEEEEEe-cCCCEEEEEECCCChHHHHHHHHHHHhCCCcccccCcceeeeeecceeEEEEeCCcCccCCcCCHHHcCCCC
Confidence 8999999 9999999999999999999999999999988 45799999999976559999999999
Q ss_pred CCEEEEEEecCC
Q psy15482 66 GDLVLLKHLGSY 77 (302)
Q Consensus 66 gd~l~L~~~~~~ 77 (302)
|++||++.+...
T Consensus 87 g~~l~lv~~lr~ 98 (105)
T 1v2y_A 87 RDEVSFIKKLGQ 98 (105)
T ss_dssp SEEEEEEECSCS
T ss_pred CCEEEEEehhcc
Confidence 999999988653
No 25
>2dzi_A Ubiquitin-like protein 4A; GDX, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.2e-17 Score=124.32 Aligned_cols=73 Identities=23% Similarity=0.255 Sum_probs=69.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 8 m~i~vk~-~~g~~~~~~v~~~~tV~~LK~~i~~~~~i~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~ 80 (81)
T 2dzi_A 8 MQLTVKA-LQGRECSLQVPEDELVSTLKQLVSEKLNVPVRQQRLLFKGKALADG-KRLSDYSIGPNSKLNLVVKP 80 (81)
T ss_dssp EEEEEEE-TTSCEEEEEECSSCBHHHHHHHHHHHTCCCTTTCEEEETTEECCTT-SBGGGGTCCSSBCCEEECCC
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCeECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 7899998 8899999999999999999999999999999999999999999886 89999999999999998764
No 26
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=99.71 E-value=3.7e-17 Score=157.24 Aligned_cols=74 Identities=16% Similarity=0.348 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh---hhCCCCCCeEEEECCeecCCCcccccccCCCCCCEE-EEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV---QSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV-LLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~---e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l-~L~~~~~ 76 (302)
|+|+||+ .+|++|+|+|++++||.+||.+|+. ++|||+++|+|+|+||+|+|+ +||++|||++|++| +|+.+..
T Consensus 8 M~I~VKt-l~Gk~~~leV~~~~TV~~LK~~I~~~~~~~gip~~~QrLiy~GK~L~D~-~tL~dygI~~gstIv~lv~k~~ 85 (368)
T 1oqy_A 8 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDD-VPIRDYRIDEKNFVVVMVTKTK 85 (368)
T ss_dssp CCEEEEE-TTTEEEEECCCTTCBHHHHHHHHHHHTCSSSCCSTEEEEESSSSEECSS-SBTTTTCCCTTSCEEEEEECCC
T ss_pred EEEEEEe-CCCCEEEEEeCCCChHHHHHHHHHHHhCcCCCChhheEEEECCeecCCc-CCHHHcCCCCCCEEEEEEecCC
Confidence 8999999 9999999999999999999999999 578999999999999999986 99999999999998 6666543
No 27
>4a20_A Ubiquitin-like protein MDY2; protein binding, GET-pathway, tail-anchored proteins; 1.78A {Saccharomyces cerevisiae} PDB: 2lxc_A 4goc_A
Probab=99.71 E-value=2e-17 Score=131.24 Aligned_cols=73 Identities=16% Similarity=0.182 Sum_probs=67.9
Q ss_pred CEEEEEeCCCCeEEEE--EeCCCccHHHHHHHH-HhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLL--DVSEDLELENFKAFC-EVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~l--eV~~~~TV~dLK~~I-e~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.|++ +|++++||.+||++| +...|+|+++|+|+|+|++|.|+ .||++||| ++|++|+|+.+.
T Consensus 20 m~I~VKt-l~g~~~~i~v~v~~~~TV~~lK~~I~~~~~gip~~~QrLi~~Gk~L~D~-~tL~dy~I~~~g~ti~lmvsk 96 (98)
T 4a20_A 20 VHLTLKK-IQAPKFSIEHDFSPSDTILQIKQHLISEEKASHISEIKLLLKGKVLHDN-LFLSDLKVTPANSTITVMIKP 96 (98)
T ss_dssp EEEEEEE-CSSSCEEEEEEECTTCBHHHHHHHHHHTTSCSCGGGEEEEETTEEECTT-CBGGGSCCBTTBCEEEEEECC
T ss_pred EEEEEEc-CCCCEEEEEEecCCCChHHHHHHHHHHHhcCCChhhEEEEECCEECcCc-CCHHHcCcCCCCCEEEEEEeC
Confidence 7999999 89988776 667999999999999 88999999999999999999996 99999999 999999998875
No 28
>2uyz_B Small ubiquitin-related modifier 1; sumoylation, cell division, nuclear protein, ubiquitin-like modifier, UBL conjugation pathway; 1.4A {Homo sapiens} SCOP: d.15.1.1 PDB: 2vrr_B 2iy0_B 2iy1_B 2g4d_B 2las_A 2io2_B 1z5s_B 3uip_B* 1tgz_B* 2bf8_B
Probab=99.71 E-value=1.4e-17 Score=125.47 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=70.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+.+.|+|+++|+|+|+|++|.|+ +||++|||++||+|+|+.+.
T Consensus 4 m~i~vk~-~~g~~~~~~v~~~~tv~~lk~~i~~~~gi~~~~qrL~~~G~~L~d~-~tl~~~~i~~~~~i~l~~~~ 76 (79)
T 2uyz_B 4 IKLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ 76 (79)
T ss_dssp EEEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTEEEEEEECC
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEeCCC-CCHHHcCCCCCCEEEEEEec
Confidence 7899999 8999999999999999999999999999999999999999999996 99999999999999998764
No 29
>3mtn_B UBA80, ubcep1, ubiquitin variant UBV.21.4; ubiquitin-specific protease activity, hydrolase, ubiquitin B structural genomics consortium, SGC; 2.70A {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3e-17 Score=124.48 Aligned_cols=74 Identities=28% Similarity=0.333 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+.++|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus 4 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~~i~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~r~~ 77 (85)
T 3mtn_B 4 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKWSTLFLLLRLR 77 (85)
T ss_dssp EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEECCCC
T ss_pred EEEEEEc-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEECc
Confidence 8999999 8999999999999999999999999999999999999999999986 999999999999999998764
No 30
>4hcn_B Polyubiquitin, ubiquitin; ubiquitin/NEDD8 deamidase, NEDD8, protein binding; 2.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=2.9e-17 Score=129.43 Aligned_cols=73 Identities=26% Similarity=0.330 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.+.++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus 23 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~~i~~g~~i~l~~rl 95 (98)
T 4hcn_B 23 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 95 (98)
T ss_dssp CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-CBSGGGTCCTTEEEEEECBC
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence 8999999 8999999999999999999999999999999999999999999986 99999999999999998775
No 31
>2hj8_A Interferon-induced 17 kDa protein; HR2873B, human ISG15, structure, northeast structural genomics consortium, protein structure initiative, NESG; NMR {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=128.58 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+..
T Consensus 5 m~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~~I~~g~~i~l~~~~~ 78 (88)
T 2hj8_A 5 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRLR 78 (88)
T ss_dssp EEEEEEE-TTSCEEEEEEESSSBHHHHHHHHHHHTCSCTTTEEEESSSSCCCTT-SBHHHHHCSTTCEEEEEEC--
T ss_pred EEEEEEC-CCCCEEEEEECCCCcHHHHHHHHHHHhCCChhHEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEEcC
Confidence 7899999 8899999999999999999999999999999999999999999986 999999999999999988754
No 32
>1wh3_A 59 kDa 2'-5'-oligoadenylate synthetase like protein; P59 OASL, ubiquitin family, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=3.5e-17 Score=125.24 Aligned_cols=74 Identities=28% Similarity=0.390 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus 8 m~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~Gk~L~d~-~tL~~~~i~~g~~i~l~~~~~ 81 (87)
T 1wh3_A 8 IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGIYGIQDSDTLILSKKKG 81 (87)
T ss_dssp EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHHHHTCCCTTTEEEEETTEECCSS-SBHHHHTCCTTEEEEEEECSC
T ss_pred EEEEEEc-CCCCEEEEEeCCCChHHHHHHHHHHHhCCChHHEEEEECCEEccCC-CCHHHCCCCCCCEEEEEEecc
Confidence 7999999 8899999999999999999999999999999999999999999986 999999999999999998764
No 33
>1wy8_A NP95-like ring finger protein, isoform A; ubiquitin-like domain, NP95/ICBP90-like ring finger (NIRF), ubiquitin ligase, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.71 E-value=5.5e-17 Score=124.78 Aligned_cols=74 Identities=18% Similarity=0.150 Sum_probs=69.8
Q ss_pred CEEEEEeCCCC-eEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTN-ECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g-~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+| +.+++ +|++++||.+||++|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus 8 m~i~Vk~-~~g~~~~~l~~v~~~~tV~~lK~~i~~~~gip~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~~~~ 83 (89)
T 1wy8_A 8 MWIQVRT-IDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLFDYDVGLNDIIQLLVRPD 83 (89)
T ss_dssp EEEEEEE-TTCSCEEEEEEECTTCBHHHHHHHHHHHSCCCTTTEEEEETTEECCSS-SBHHHHTCCTTCEEEEEECCC
T ss_pred EEEEEEE-CCCCceEEEEecCCCCCHHHHHHHHHHHHCcChhhEEEEECCeECCCC-CCHHHCCCCCCCEEEEEEeCC
Confidence 8999999 888 79999 59999999999999999999999999999999999986 999999999999999998764
No 34
>2kan_A Uncharacterized protein AR3433A; ubiquitin fold, alpha+beta, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.70 E-value=4.5e-17 Score=127.81 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .++ +++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+++||++|||++|++|+|+.+..
T Consensus 16 ~~I~Vk~-~~~-~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~~~tL~~ygI~~gstl~lv~r~~ 89 (94)
T 2kan_A 16 IHVTVKF-PSK-QFTVEVDRTETVSSLKDKIHIVENTPIKRMQLYYSGIELADDYRNLNEYGITEFSEIVVFLKSI 89 (94)
T ss_dssp EEEEEEC-SSC-EEEEEECTTCBHHHHHHHHHHHSSSCTTTEEEEETTEEECCTTSBHHHHTCCTTEEEEEEECCC
T ss_pred EEEEEEc-CCc-EEEEEECCCCcHHHHHHHHHHHHCcCHHHEEEEECCEECCCCcccHHHCCCCCCCEEEEEEeCC
Confidence 7899999 777 8999999999999999999999999999999999999998843899999999999999998764
No 35
>1yx5_B Ubiquitin; proteasome, UIM, hydrolase; NMR {Homo sapiens} SCOP: d.15.1.1 PDB: 1yx6_B
Probab=99.70 E-value=1e-16 Score=125.88 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+..
T Consensus 1 M~I~Vk~-~~g~~~~~~v~~~~TV~~LK~~I~~~~gi~~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~ 74 (98)
T 1yx5_B 1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 74 (98)
T ss_dssp CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHTCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCC
T ss_pred CEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEeCC
Confidence 9999999 8899999999999999999999999999999999999999999986 999999999999999988764
No 36
>1ttn_A DC-UBP, dendritic cell-derived ubiquitin-like protein; ubiquitin-like domain, solution structure, signaling protein; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.69 E-value=7e-17 Score=129.14 Aligned_cols=75 Identities=15% Similarity=0.071 Sum_probs=71.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.+.++|++++||.+||.+|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.+.
T Consensus 24 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~g~ti~lv~~~~~ 98 (106)
T 1ttn_A 24 CQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPLTDK-MKFEELKIPKDYVVQVIVSQPV 98 (106)
T ss_dssp EEEEEEE-TTTEEEEEEECTTSHHHHHHHHHHHTTCCCSTTCEEEETTEECCTT-SHHHHCCCSSSCEEEEECCCSS
T ss_pred EEEEEEc-CCCCEEEEEeCCCCcHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeCCC
Confidence 7899999 8899999999999999999999999999999999999999999886 9999999999999999987643
No 37
>2klc_A Ubiquilin-1; ubiquitin-like, structural genomics, PSI-2, protein structur initiative, northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.69 E-value=1.1e-16 Score=126.99 Aligned_cols=73 Identities=33% Similarity=0.393 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ . |+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|+|+ +||++|||++|++|+|+.+.+
T Consensus 26 m~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~g~~I~l~~~~~ 98 (101)
T 2klc_A 26 MKVTVKT-P-KEKEEFAVPENSSVQQFKEEISKRFKSHTDQLVLIFAGKILKDQ-DTLSQHGIHDGLTVHLVIKTQ 98 (101)
T ss_dssp EEEEEEC-S-SCEEEEEECSCCCHHHHHHHHHHHHTCCGGGEEEEETTEEECTT-CCTGGGTCCTTCEEEEEECCS
T ss_pred EEEEEEe-C-CcEEEEEECCCCCHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcCC
Confidence 7899999 6 88999999999999999999999999999999999999999986 999999999999999998764
No 38
>1wyw_B Ubiquitin-like protein SMT3C; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 1y8r_C* 2asq_A 2pe6_B 1a5r_A 2kqs_A 3kyc_D* 3rzw_C
Probab=99.69 E-value=5.1e-17 Score=127.95 Aligned_cols=73 Identities=21% Similarity=0.322 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||++|+.+.|||+++|+|+|+|+.|.|+ +||++|||++||+|+|+.+.
T Consensus 22 m~I~Vk~-~~g~~~~l~v~~~~tv~~lK~~i~~~~gip~~~qrLif~Gk~L~d~-~tl~dy~i~~g~~I~l~~~~ 94 (97)
T 1wyw_B 22 IKLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQEQ 94 (97)
T ss_dssp EEEEEEC-TTCCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCHHHHTCCTTCEEEEEESS
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCCChhhEEEEECCeEcCCC-CCHHHCCCCCCCEEEEEEec
Confidence 7899999 8999999999999999999999999999999999999999999986 99999999999999998765
No 39
>1yqb_A Ubiquilin 3; structural genomics consortium, ubiquitin, ubiquitin-like domain, structural genomics, signaling protein SGC; 2.00A {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=9e-17 Score=127.46 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+ ++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+..+
T Consensus 23 m~I~Vk~-~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~r~~~ 96 (100)
T 1yqb_A 23 IKVTVKT-PKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH 96 (100)
T ss_dssp EEEEEEC-SSCE-EEEEEETTCBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBHHHHTCCTTCEEEEEECCCC
T ss_pred EEEEEEc-CCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHCCCCCCCEEEEEEcCCC
Confidence 7899999 7776 79999999999999999999999999999999999999986 9999999999999999988643
No 40
>1wx7_A Ubiquilin 3; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1.7e-16 Score=126.73 Aligned_cols=74 Identities=23% Similarity=0.300 Sum_probs=69.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+++ +.++|++++||.+||++|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus 18 m~I~Vk~-~~g~-~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~~ 91 (106)
T 1wx7_A 18 IKVTVKT-PKDK-EDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDP-DSLAQCGVRDGLTVHLVIKRQH 91 (106)
T ss_dssp EEEEEEC-SSCE-EEEEEETTCCHHHHHHHHHHHHTCCTTTEEEEETTEECCTT-SCHHHHTCCTTEEEEEEECCCC
T ss_pred EEEEEEe-CCCc-EEEEECCCCcHHHHHHHHHHHHCcChhhEEEEECCEECCCc-CcHHHcCCCCCCEEEEEEcCCC
Confidence 7899999 7776 79999999999999999999999999999999999999986 9999999999999999987654
No 41
>1wgd_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; ENDPLASMIC reticulum stress, UBL domain; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.68 E-value=1e-16 Score=124.86 Aligned_cols=74 Identities=14% Similarity=0.127 Sum_probs=68.5
Q ss_pred CEEEEEeCCCCe--EEEEEeCCCccHHHHHHHHHhhh--CCCCCCeEEEECCeecCCCccccccc--CCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNE--CFLLDVSEDLELENFKAFCEVQS--GYPAHEIAIEFQGVLLQDNKKTLKTH--GIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~--~~~leV~~~~TV~dLK~~Ie~e~--gIp~~~Q~Li~~Gk~L~D~~~TL~~~--gI~dgd~l~L~~~ 74 (302)
|+|+|++ .++. .++|+|++++||.+||++|+.++ |+|+++|+|+|+|++|+|+ +||++| ||++|++|||+.+
T Consensus 8 m~i~Vk~-~~~~~~~~~v~v~~~~TV~~lK~~I~~~~~~~i~~~~QrLi~~Gk~L~D~-~tL~~~~~~i~~~~~i~lv~~ 85 (93)
T 1wgd_A 8 VTLLVKS-PNQRHRDLELSGDRGWSVGHLKAHLSRVYPERPRPEDQRLIYSGKLLLDH-QCLRDLLPKQEKRHVLHLVCN 85 (93)
T ss_dssp CEEEEEC-SSSSCCCEEEECCTTSCHHHHHHHHHHHSTTCCCTTTCEEEETTEECCSS-SCHHHHSCSSSCSEEEEEECC
T ss_pred EEEEEEe-CCCCeEEEEEecCCCCcHHHHHHHHHHHhcCCCChHHeEEEECCEECcCc-CCHHHHhcCCCCCCEEEEEeC
Confidence 7999999 7777 67788889999999999999999 9999999999999999986 899999 9999999999877
Q ss_pred cC
Q psy15482 75 GS 76 (302)
Q Consensus 75 ~~ 76 (302)
..
T Consensus 86 ~~ 87 (93)
T 1wgd_A 86 VK 87 (93)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 42
>3b1l_X E3 ubiquitin-protein ligase parkin; proteasome, ALFA-beta-protein; 1.85A {Mus musculus} PDB: 1mg8_A 2zeq_A 2knb_A 1iyf_A
Probab=99.50 E-value=2.8e-18 Score=128.07 Aligned_cols=73 Identities=22% Similarity=0.341 Sum_probs=69.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 1 M~i~Vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gi~~~~qrL~~~gk~L~d~-~tL~~~~i~~g~~i~l~~rl 73 (76)
T 3b1l_X 1 MIVFVRF-NSSYGFPVEVDSDTSILQLKEVVAKQQGVPADQLRVIFAGKELPNH-LTVQNCDLEQQSIVHIVQRP 73 (76)
Confidence 9999999 8899999999999999999999999999999999999999999986 99999999999999998764
No 43
>1wx8_A Riken cDNA 4931431F19; ubiquitin-like domain, ubiquilin 1-like, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=5.3e-17 Score=126.96 Aligned_cols=74 Identities=24% Similarity=0.380 Sum_probs=69.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ . |+.++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus 18 m~i~Vk~-~-g~~~~~~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~i~l~~~~~~ 91 (96)
T 1wx8_A 18 IRVSVKT-P-QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQ-DILSQRGILDGSTVHVVVRSHS 91 (96)
T ss_dssp EEEEEEC-S-SSEEEEEEETTCCHHHHHHHHHHHTCSCTTTBCCEETTEECCTT-SCHHHHTCCTTEEEECCBCCSS
T ss_pred EEEEEEE-C-CeEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEECCCc-CCHHHCCCCCCCEEEEEEeCCC
Confidence 7899999 6 89999999999999999999999999999999999999999886 9999999999999999887643
No 44
>1wia_A Hypothetical ubiquitin-like protein (riken cDNA 2010008E23); 'structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.67 E-value=2.8e-16 Score=122.71 Aligned_cols=73 Identities=16% Similarity=0.156 Sum_probs=68.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.+.++|++++||.+||++|+..+ +++|+|+|+|+.|.|+++||++|||++|++|||+.+.+.
T Consensus 8 m~i~Vk~-~~g~~~~~~v~~~~TV~~LK~~i~~~~---~~~qrLi~~Gk~L~D~~~tL~~y~i~~g~~i~l~~~~~~ 80 (95)
T 1wia_A 8 INVRLKF-LNDTEELAVARPEDTVGTLKSKYFPGQ---ESQMKLIYQGRLLQDPARTLSSLNITNNCVIHCHRSPPG 80 (95)
T ss_dssp EEEEEEE-TTTEEEEEEECSSSBHHHHHHHHSSST---TTTCEEEETTEECCCSSCBTTTTTCCTTEEEEEECCCCC
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHhhC---cCcEEEEECCEEccCCcCCHHHcCCCCCCEEEEEECCCC
Confidence 7899999 899999999999999999999999988 899999999999988548999999999999999987654
No 45
>1wxv_A BAG-family molecular chaperone regulator-1; structural genomics, apoptosis, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.9e-16 Score=123.00 Aligned_cols=75 Identities=28% Similarity=0.344 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCC-----ccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSED-----LELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~-----~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|+. .++.++++|+++ +||.+||++|+..+|+|+++|+|+|+|+.|.|++.+|++|||++|++|+|+.+.
T Consensus 8 ~~v~Vk~--~~~~~~i~v~~~~~~~~~TV~~LK~~i~~~~gip~~~qrL~~~Gk~L~D~~~~L~~~~i~~g~~i~l~~~~ 85 (92)
T 1wxv_A 8 LTVTVTH--SNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETPLSALGIQDGCRVMLIGKK 85 (92)
T ss_dssp EEEEEEC--SSSEEEEEECCCSSSSSCBHHHHHHHHHHHTCCCTTTCEEEETTEEECCSSSBHHHHTCCSSEEEEEESCC
T ss_pred EEEEEEE--CCEEEEEEECCCcCcccCcHHHHHHHHHHHHCcCHHHEEEEECCeecCCCcccHHHCCCCCCCEEEEEecC
Confidence 6788887 478899999996 999999999999999999999999999999985479999999999999998776
Q ss_pred CC
Q psy15482 76 SY 77 (302)
Q Consensus 76 ~~ 77 (302)
..
T Consensus 86 ~~ 87 (92)
T 1wxv_A 86 NS 87 (92)
T ss_dssp SC
T ss_pred CC
Confidence 43
No 46
>3vdz_A Ubiquitin-40S ribosomal protein S27A; gadolinium, MRI contrast agent, peptide-based contrast agent lanthanide binding TAG; 2.40A {Synthetic construct} PDB: 2ojr_A
Probab=99.67 E-value=2.1e-16 Score=127.51 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 36 m~I~Vk~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~rl 108 (111)
T 3vdz_A 36 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHhCCChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence 7999999 8999999999999999999999999999999999999999999996 89999999999999999875
No 47
>1wju_A NEDD8 ultimate buster-1; ubiquitin-like domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, protein binding; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.67 E-value=1.3e-16 Score=126.89 Aligned_cols=72 Identities=18% Similarity=0.172 Sum_probs=64.4
Q ss_pred EEEEeCCC----CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 3 VTVSTQHT----NECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 3 ItV~~~~~----g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|.|++ .+ ++.++|+|++++||.+||++|+.++|+|+++|+|||+||+|+|+ +||++|||++|++|+++....
T Consensus 18 i~V~~-~~~~~~~~~~~lev~~~~TV~~lK~kI~~k~gip~~qQrLI~~GKiL~D~-~TL~~y~I~~gsti~vl~lrg 93 (100)
T 1wju_A 18 IEVFL-PPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLG-KTLEEQGVAHNVKAMVLELKQ 93 (100)
T ss_dssp EEEEC-CTTTCCSSSEEEEEESSSBHHHHHHHHHHHTTCCSTTCEEEETTEECCTT-SBHHHHTCCSSEEEEEECCCC
T ss_pred EEEEe-cCCCCCCcEEEEEeCCcCHHHHHHHHHHHHHCcCHHHeEEEeCCeECCCC-CcHHHcCCCCCCEEEEEEECC
Confidence 55666 33 78899999999999999999999999999999999999999996 999999999999997765543
No 48
>2l7r_A Ubiquitin-like protein FUBI; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; NMR {Homo sapiens}
Probab=99.66 E-value=2.3e-16 Score=123.30 Aligned_cols=71 Identities=18% Similarity=0.246 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ |+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+.
T Consensus 20 m~I~Vk~---g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~y~I~~gstI~lv~rl 90 (93)
T 2l7r_A 20 MQLFVRA---QELHTFEVTGQETVAQIKAHVASLEGIAPEDQVVLLAGAPLEDE-ATLGQCGVEALTTLEVAGRM 90 (93)
T ss_dssp CEEEEES---SSEEEEECCSSCBHHHHHHHHHHHHTCCGGGCEEEETTEECCTT-SBHHHHTCCSSCEEEEECCC
T ss_pred EEEEEEC---CCEEEEEeCCCCcHHHHHHHHHHHhCcChhHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEec
Confidence 8899998 78999999999999999999999999999999999999999986 99999999999999998764
No 49
>1v5t_A 8430435I17RIK protein; hypothetical protein, ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 2kx3_A
Probab=99.65 E-value=2.8e-16 Score=122.08 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCeEEEE-EeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLL-DVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~l-eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|+. .|+.|+| +|+++.||.+||+.|+..+|||+++|+|+ |+|++|+|+ .+|++|||++|++|+|+....
T Consensus 8 m~i~Vk~--~g~~~~i~~v~~~~TV~~lK~~I~~~~gip~~~QkLi~~k~~Gk~L~D~-~~L~~~~i~~g~~l~l~~~~~ 84 (90)
T 1v5t_A 8 LPIIVKW--GGQEYSVTTLSEDDTVLDLKQFLKTLTGVLPERQKLLGLKVKGKPAEND-VKLGALKLKPNTKIMMMGTRE 84 (90)
T ss_dssp CCEEEEE--TTEEEEECSCCSSSBHHHHHHHHHHHTCCCTTTCEEESCEETTEECCTT-SBHHHHTCCTTEEEEEECCCS
T ss_pred EEEEEEE--CCEEEEEEEeCCCCCHHHHHHHHHHHHCcCHHHeEEEeeccCCcCcCCC-CCHHHcCCCCCCEEEEEecCc
Confidence 7899987 6899999 99999999999999999999999999999 999999986 899999999999999987653
No 50
>3l0w_B Monoubiquitinated proliferating cell nuclear antigen, proliferating cell nuclear antigen; replication, DNA damage, DNA repair; 2.80A {Saccharomyces cerevisiae} PDB: 3l10_B
Probab=99.65 E-value=7.2e-16 Score=133.32 Aligned_cols=75 Identities=25% Similarity=0.303 Sum_probs=71.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|||+.+...
T Consensus 1 MqI~Vk~-~~Gk~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~y~I~~gstI~Lvlrl~G 75 (169)
T 3l0w_B 1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLRG 75 (169)
T ss_dssp CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECCCC
T ss_pred CEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCHHHEEEEECCccccCc-CcHHHcCCCCCCEEEEEEEecc
Confidence 9999999 9999999999999999999999999999999999999999999986 9999999999999999987643
No 51
>1wgh_A Ubiquitin-like 3, HCG-1 protein; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=6.1e-16 Score=126.23 Aligned_cols=75 Identities=12% Similarity=0.108 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh------hhCC--CCCCeEEEECCeecCCCcccccccCCCCC--CEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV------QSGY--PAHEIAIEFQGVLLQDNKKTLKTHGIQDG--DLVL 70 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~------e~gI--p~~~Q~Li~~Gk~L~D~~~TL~~~gI~dg--d~l~ 70 (302)
|+|+|++ .+|++++|+|++++||.+||++|+. ++|+ |+++|+|||.||+|+|+ +||++|+|+.+ .+||
T Consensus 17 m~I~vKt-l~G~t~~lev~~s~TV~~lK~kI~~~~p~dwke~~p~p~~qqrLIy~GK~LeD~-~TL~~y~I~~~~~~tlh 94 (116)
T 1wgh_A 17 INLRLIL-VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMH 94 (116)
T ss_dssp EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHSSSCCSSCCCCCCTTTEEEEETTEEECSS-CBTTTTTCCSSCEEEEE
T ss_pred EEEEEEe-CCCCEEEEEECCcCHHHHHHHHHHHhcccccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEE
Confidence 7899999 9999999999999999999999999 5575 69999999999999997 99999999877 4688
Q ss_pred EEEecCC
Q psy15482 71 LKHLGSY 77 (302)
Q Consensus 71 L~~~~~~ 77 (302)
|+.+...
T Consensus 95 Lvlr~~~ 101 (116)
T 1wgh_A 95 LVARETL 101 (116)
T ss_dssp EEECSSC
T ss_pred EEccCCC
Confidence 8887653
No 52
>1x1m_A Ubiquitin-like protein SB132; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.64 E-value=5.5e-16 Score=124.21 Aligned_cols=75 Identities=21% Similarity=0.247 Sum_probs=68.2
Q ss_pred CEEEEEeCCCC---eEEEEEeC--------C-CccHHHHHHHHHhhh--CCCCCC-eEEEECCeecCCCcccccccCCCC
Q psy15482 1 MKVTVSTQHTN---ECFLLDVS--------E-DLELENFKAFCEVQS--GYPAHE-IAIEFQGVLLQDNKKTLKTHGIQD 65 (302)
Q Consensus 1 MqItV~~~~~g---~~~~leV~--------~-~~TV~dLK~~Ie~e~--gIp~~~-Q~Li~~Gk~L~D~~~TL~~~gI~d 65 (302)
|+|+|++ .++ ..++|+|+ + ++||.+||++|+..+ |+|+++ |+|+|+|+.|+|+ +||++|||++
T Consensus 13 ~~i~Vk~-~~~~~~~~~~l~v~~~~~~~v~~~~~TV~~LK~~i~~~~~~gip~~~~qrLi~~Gk~L~D~-~tL~~y~i~~ 90 (107)
T 1x1m_A 13 WHLAVKL-ADQPLAPKSILQLPETELGEYSLGGYSISFLKQLIAGKLQESVPDPELIDLIYCGRKLKDD-QTLDFYGIQP 90 (107)
T ss_dssp CCEEEEE-TTCTTSCCEEECCCCCSSCSSCCCCCBHHHHHHHHHHHCTTTCCCSSSEEEEETTEECCTT-CBHHHHTCCT
T ss_pred eEEEEEe-CCCCCccEEEEEecCccccccCcccCCHHHHHHHHHHHhccCCChhhcEEEEECCeECCCC-CcHHHcCCCC
Confidence 7899999 778 89999955 4 599999999999999 999999 9999999999986 9999999999
Q ss_pred CCEEEEEEecCC
Q psy15482 66 GDLVLLKHLGSY 77 (302)
Q Consensus 66 gd~l~L~~~~~~ 77 (302)
|++|||+.+.++
T Consensus 91 g~~i~lv~~~~~ 102 (107)
T 1x1m_A 91 GSTVHVLRKSWS 102 (107)
T ss_dssp TCEEEEEESSCC
T ss_pred CCEEEEEeCCCC
Confidence 999999987643
No 53
>1j8c_A Ubiquitin-like protein hplic-2; ubiquitin-like domain, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.64 E-value=5.3e-16 Score=127.95 Aligned_cols=74 Identities=31% Similarity=0.368 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|+|+|++ . |+.++++|++++||.+||.+|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+...
T Consensus 33 m~I~Vk~-~-g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~lv~~~~g 106 (125)
T 1j8c_A 33 IKVTVKT-P-KEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQHGIHDGLTVHLVIKRDP 106 (125)
T ss_dssp EEEEEEC-S-SCEEEEEECTTCCHHHHHHHHHHHHCSCSSSEEEEETTEEESTT-SCGGGTTCSSSEEEEEEEC---
T ss_pred EEEEEEe-C-CeEEEEEECCCCcHHHHHHHHHHHHCcCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccCC
Confidence 7899999 6 88999999999999999999999999999999999999999986 9999999999999999987643
No 54
>2fnj_B Transcription elongation factor B polypeptide 2; beta-sandwich, lectin-like, SPRY, protein transport/signaling protein complex; 1.80A {Mus musculus} SCOP: d.15.1.1 PDB: 1lm8_B 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A
Probab=99.64 E-value=3.6e-16 Score=127.83 Aligned_cols=72 Identities=24% Similarity=0.207 Sum_probs=66.2
Q ss_pred CEEEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCC-------CCCEEEEE
Q psy15482 1 MKVTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQ-------DGDLVLLK 72 (302)
Q Consensus 1 MqItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~-------dgd~l~L~ 72 (302)
|+++|+. ..+ .+++|+|++++||.+||++|+.++|||+++|+|+|+||+|+|+ +||++|||+ ++++|+|+
T Consensus 1 M~mfl~i-r~~ktti~lev~~sdTV~~lK~kI~~~egIP~~qQrLi~~Gk~LeD~-~TLsdy~I~~~~a~~q~~stL~L~ 78 (118)
T 2fnj_B 1 MDVFLMI-RRHKTTIFTDAKESSTVFELKRIVEGILKRPPEEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLA 78 (118)
T ss_dssp CEEEEEE-EEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBHHHHTCCTTTSBTTBCEEEEEE
T ss_pred CcEEEEE-ecCCEEEEEEeCCcChHHHHHHHHHHHhCCCHHHeEEEECCeECCCC-CCHHHcCcccccccCCCCCEEEEE
Confidence 7777777 444 5689999999999999999999999999999999999999986 999999999 79999999
Q ss_pred Ee
Q psy15482 73 HL 74 (302)
Q Consensus 73 ~~ 74 (302)
.+
T Consensus 79 lr 80 (118)
T 2fnj_B 79 FR 80 (118)
T ss_dssp EB
T ss_pred ec
Confidence 88
No 55
>2ojr_A Ubiquitin; lanthide-binding TAG, terbium, TB, SAD phasing, protein binding; 2.60A {Homo sapiens}
Probab=99.64 E-value=9.8e-16 Score=123.41 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 36 m~I~Vk~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~~gI~~gs~I~l~~rl 108 (111)
T 2ojr_A 36 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 108 (111)
T ss_dssp EEEEEEC-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCTTTEEEEETTEECCSS-CBTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEc-CCCCEEEEEeCCCCCHHHHHHHHHHHHCcCcccEEEEECCEECCCC-CcHHHcCCCCCCEEEEEEeC
Confidence 7899999 8899999999999999999999999999999999999999999886 99999999999999998875
No 56
>2daf_A FLJ35834 protein; hypothetical protein FLJ35834, ubiquitin-like domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.63 E-value=7.3e-16 Score=125.45 Aligned_cols=74 Identities=22% Similarity=0.368 Sum_probs=67.4
Q ss_pred EEEE--eCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 3 VTVS--TQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 3 ItV~--~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
+||+ ....++.++++++++.||.+||+.++.++++|++.|+|+|+||+|+|+ .||++|||++|.+|||+.+...
T Consensus 16 itvkv~l~~~~~k~tv~v~~d~TV~dLKe~ls~~~~iP~e~qrLIy~GKiLKD~-eTL~~~gIk~g~TIhLvi~s~~ 91 (118)
T 2daf_A 16 ATVKVVLIPVGQEIVIPFKVDTILKYLKDHFSHLLGIPHSVLQIRYSGKILKNN-ETLVQHGVKPQEIVQVEIFSTN 91 (118)
T ss_dssp EEEEEEETTTCCEEEEEECSSSCSHHHHHHHHHHHTCCTTTEEEEETTEEECSS-CCHHHHSCCSSCEEEEEEEESC
T ss_pred EEEEEEEcCCCcEEEEEeCCCCcHHHHHHHHHhhhCCChHHEEEEECCeEcCCc-chHHHcCCCCCCEEEEEEecCC
Confidence 4555 325788999999999999999999999999999999999999999997 8999999999999999998754
No 57
>4ajy_B Transcription elongation factor B polypeptide 2; E3 ubiquitin ligase, transcription factor, hypoxic signaling transcription; 1.73A {Homo sapiens} PDB: 1lqb_A 1vcb_A 2c9w_B 2izv_B 2jz3_B 2xai_C 3dcg_A 3zrc_A* 3zrf_A 3ztc_A* 3ztd_A* 3zun_A* 1lm8_B 4b95_A* 2fnj_B 4b9k_A* 4awj_A*
Probab=99.63 E-value=6.3e-16 Score=126.20 Aligned_cols=74 Identities=23% Similarity=0.212 Sum_probs=69.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCC-------CCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQD-------GDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~d-------gd~l~L~~ 73 (302)
|-++|+......++.++|++++||.+||++|+..+|||+++|+|+|+|++|+|+ +||++|||++ +++|+|+.
T Consensus 1 m~vFl~Ikr~ktTI~ldve~sdTV~~lK~kI~~~~giPp~qQrLI~~Gk~LeD~-kTL~dy~I~~~ta~~q~~atl~Lvl 79 (118)
T 4ajy_B 1 MDVFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECGFTSQTARPQAPATVGLAF 79 (118)
T ss_dssp CEEEEEEEEBTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTTTTTCCGGGSBTTBCEEEEEEE
T ss_pred CceEEEEecCCEEEEEEcCCCChHHHHHHHHHHHHCCCHHHeEEEeCCeECCCc-CCHHHcCCCcCcccCCCCCEEEEEE
Confidence 788888855566889999999999999999999999999999999999999996 9999999999 99999998
Q ss_pred ec
Q psy15482 74 LG 75 (302)
Q Consensus 74 ~~ 75 (302)
+.
T Consensus 80 r~ 81 (118)
T 4ajy_B 80 RA 81 (118)
T ss_dssp CC
T ss_pred ec
Confidence 86
No 58
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.63 E-value=8.9e-16 Score=130.09 Aligned_cols=74 Identities=15% Similarity=0.172 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus 82 m~i~vk~-~~g~~~~~~v~~~~tV~~lK~~i~~~~gip~~~q~L~~~G~~L~d~-~tL~~y~i~~g~~l~l~~rl~ 155 (159)
T 3rt3_B 82 LSILVRN-NKGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGEYGLKPLSTVFMNLRLR 155 (159)
T ss_dssp EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-SBGGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCHHHEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEecC
Confidence 7899999 8999999999999999999999999999999999999999999996 999999999999999998753
No 59
>3m63_B Ubiquitin domain-containing protein DSK2; armadillo-like repeats, UBL conjugation pathway, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=99.63 E-value=1.3e-16 Score=126.80 Aligned_cols=71 Identities=21% Similarity=0.389 Sum_probs=65.0
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
+|+|++ +|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+.
T Consensus 30 ~I~Vk~--~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~gI~~g~tI~lv~~~ 100 (101)
T 3m63_B 30 NIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVESYHIQDGHSVHLVKSQ 100 (101)
T ss_dssp CEEEEC--SSCCCCBCCCTTSBHHHHHHHHHHHHSCCSTTCCEEETTEECCTT-SBTTTTTCCTTEEEEECCCC
T ss_pred EEEEEE--CCEEEEEEeCCCCCHHHHHHHHHHHHCcChHHEEEEECCEECCCc-CcHHHCCCCCCCEEEEEeCC
Confidence 455554 788999999999999999999999999999999999999999996 99999999999999998653
No 60
>2kdb_A Homocysteine-responsive endoplasmic reticulum- resident ubiquitin-like domain member...; UBL domain, membrane, polymorphism, transmembrane; NMR {Homo sapiens}
Probab=99.63 E-value=3.6e-16 Score=124.13 Aligned_cols=70 Identities=14% Similarity=0.198 Sum_probs=63.5
Q ss_pred CEEEEEeCCCCe--EEEEEeCCCccHHHHHHHHHhh-hCCC-CCCeEEEECCeecCCCccccccc--CCCCCCEEEEE
Q psy15482 1 MKVTVSTQHTNE--CFLLDVSEDLELENFKAFCEVQ-SGYP-AHEIAIEFQGVLLQDNKKTLKTH--GIQDGDLVLLK 72 (302)
Q Consensus 1 MqItV~~~~~g~--~~~leV~~~~TV~dLK~~Ie~e-~gIp-~~~Q~Li~~Gk~L~D~~~TL~~~--gI~dgd~l~L~ 72 (302)
|+|+|++ .+++ .++|+|++++||.+||++|+.+ .|+| +++|||+|+||+|+|+ +||++| ||++|++|+|+
T Consensus 24 m~I~VK~-~~g~~~~i~l~v~~~~TV~~LK~~I~~~~~g~pp~~~QrLIy~Gk~L~D~-~tL~~y~~~I~~~~tihLv 99 (99)
T 2kdb_A 24 VTLIIKA-PNQKYSDQTISCFLNWTVGKLKTHLSNVYPSKPLTKDQRLVYSGRLLPDH-LQLKDILRKQDEYHMVHLV 99 (99)
T ss_dssp EEEEEEC-TTSSSCCEEEEECTTSBHHHHHHHHHHHSTTCCCTTTCCEEETTEEECTT-SBTHHHHTTTCSEEEEEEC
T ss_pred EEEEEEc-CCCCEEEEEEEcCCCCHHHHHHHHHHHHhcCCCChhhEEEEECCEECCCC-CCHHHHhcCCCCCCEEEeC
Confidence 7899999 7777 6799999999999999999986 5666 5999999999999986 999999 99999999984
No 61
>2kdi_A Ubiquitin, vacuolar protein sorting-associated protein 27 fusion protein; ubiquitin interacting motif, UIM, protein domain interface; NMR {Saccharomyces cerevisiae}
Probab=99.62 E-value=1.7e-15 Score=122.81 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=70.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
.+|+|++ .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|.|+ +||++|||++|++|+|+.+..
T Consensus 10 ~~i~vk~-l~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrLi~~Gk~L~D~-~tL~~ygI~~gstI~l~~~~~ 83 (114)
T 2kdi_A 10 FQIFAKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIWAGKQLEDG-RTLSDYNIQRESTLHLVLRLR 83 (114)
T ss_dssp CEEEEEE-TTCCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTTTTTCCSSCEEEEEECCC
T ss_pred EEEEEEe-CCCcEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCEECCCC-CcHHHCCCCCCCEEEEEEEcC
Confidence 3799999 9999999999999999999999999999999999999999999986 999999999999999998764
No 62
>2gow_A HCG-1 protein, ubiquitin-like protein 3; BC059385, structural genomics, protein structure initiative, PSI; NMR {Homo sapiens}
Probab=99.62 E-value=7.2e-16 Score=127.36 Aligned_cols=74 Identities=12% Similarity=0.102 Sum_probs=67.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHh------hhCCC--CCCeEEEECCeecCCCcccccccCCCCCC--EEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEV------QSGYP--AHEIAIEFQGVLLQDNKKTLKTHGIQDGD--LVL 70 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~------e~gIp--~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd--~l~ 70 (302)
|+|+|++ .+|++++++|++++||.+||++|+. ++|+| +++|+|||+||+|+|+ +||++|+|++|+ +||
T Consensus 18 m~I~vkt-l~G~~~~lev~~s~TV~~lK~~I~~~~p~dwke~ip~~~~~qrLIy~GK~LeD~-~TL~~y~I~~~~~~tlh 95 (125)
T 2gow_A 18 INLRLIL-VSGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLHGN-VTLGALKLPFGKTTVMH 95 (125)
T ss_dssp EEEEEEC-TTSCEEEEEECTTSBHHHHHHHHHSSCCCSCCCCTTCCGGGEEEESSSSEEESS-CBTGGGCCCTTSEEEEE
T ss_pred EEEEEEe-CCCCEEEEEeCCccHHHHHHHHHHHHCCcccccCCCCChHHEEEEECCcCCCCC-CcHHHcCCCCCCceEEE
Confidence 6788998 8899999999999999999999999 67884 8999999999999996 999999999887 678
Q ss_pred EEEecC
Q psy15482 71 LKHLGS 76 (302)
Q Consensus 71 L~~~~~ 76 (302)
|+.+..
T Consensus 96 lv~r~~ 101 (125)
T 2gow_A 96 LVARET 101 (125)
T ss_dssp EEECSC
T ss_pred EEecCC
Confidence 887764
No 63
>1wgg_A Ubiquitin carboxyl-terminal hydrolase 14; ubiquitin specific protease 14, USP14, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.62 E-value=1.5e-15 Score=119.67 Aligned_cols=72 Identities=22% Similarity=0.213 Sum_probs=66.6
Q ss_pred CEEEEEeCCCCeEE-EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~-~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|+. .|+.| +|+|+++.||.+||+.|+..+|||+++|+|+|+|++|+|+ +|++|||++|++|+|+.+..
T Consensus 8 m~i~Vk~--~g~~~~~l~v~~~~TV~~lK~~I~~~tgip~~~QkLi~~Gk~L~D~--tL~~~~I~~g~~i~l~~~~~ 80 (96)
T 1wgg_A 8 YSVTVKW--GKEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGNIKMKNGMTVLMMGSAD 80 (96)
T ss_dssp EEEEEEE--TTEEEEEEEEESSSCHHHHHHHHHHHTCCCTTTSCCEETTEECCSS--CCCSCCCCSSCEEECCCCCC
T ss_pred EEEEEEE--CCEEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCcCCCCC--CHHHCCCCCCCEEEEEecch
Confidence 6788886 68999 6999999999999999999999999999999999999884 99999999999999987654
No 64
>2kd0_A LRR repeats and ubiquitin-like domain-containing protein AT2G30105; ubiquitin-like protein, NESG, leucine-rich repeat, structural genomics; NMR {Arabidopsis thaliana}
Probab=99.62 E-value=1.7e-15 Score=116.45 Aligned_cols=69 Identities=19% Similarity=0.259 Sum_probs=64.0
Q ss_pred EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+++. .+|+.++++|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ +||++|||++|++|+|+.+
T Consensus 15 ~~~~-~~g~~~~l~v~~~~TV~~LK~~I~~~~gip~~~qrL~~~Gk~L~D~-~tL~~~gi~~g~~l~l~~s 83 (85)
T 2kd0_A 15 LTVK-FGGKSIPLSVSPDCTVKDLKSQLQPITNVLPRGQKLIFKGKVLVET-STLKQSDVGSGAKLMLMAS 83 (85)
T ss_dssp EEEE-ETTEEEEEEECTTSBHHHHHHHHHHHHCCCTTTCEEEETTEECCTT-CBTTTTTCCTTEEEEEECC
T ss_pred EEEE-ECCEEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCeECCCc-CCHHHCCCCCCCEEEEEEe
Confidence 3444 6899999999999999999999999999999999999999999886 9999999999999999764
No 65
>3rt3_B Ubiquitin-like protein ISG15; ubiquitin-like domain, isgylation, antiviral protein-viral P complex; 2.01A {Homo sapiens} PDB: 3sdl_C 3r66_C 3pse_B 1z2m_A
Probab=99.61 E-value=1.7e-15 Score=128.32 Aligned_cols=73 Identities=26% Similarity=0.340 Sum_probs=70.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE-E-CCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE-F-QGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li-~-~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+ | +|+.|+|+ .||++|||++|++|+|+.+.
T Consensus 3 m~i~vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~~~g~~L~d~-~tL~~y~i~~~~~l~l~~~~ 77 (159)
T 3rt3_B 3 WDLTVKM-LAGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDR-VPLASQGLGPGSTVLLVVDK 77 (159)
T ss_dssp CEEEEEE-TTSCEEEEECCTTCCHHHHHHHHHHHHCCCGGGEEEEEETTCCBCCTT-SCGGGGTCCTTCEEEEEECC
T ss_pred eEEEEEE-CCCCEEEEEeCCCCcHHHHHHHHHHHhCCCHHHEEEEEcCCCCCCCCC-CCHHHcCCCCCCEEEEEccC
Confidence 8999999 9999999999999999999999999999999999999 9 89999886 99999999999999999873
No 66
>4dbg_A Ranbp-type and C3HC4-type zinc finger-containing; ubiquitin fold, ubiquitination, ligase; 2.71A {Homo sapiens} PDB: 2lgy_A
Probab=99.61 E-value=2.6e-15 Score=120.44 Aligned_cols=75 Identities=25% Similarity=0.392 Sum_probs=67.5
Q ss_pred CEEEEEeCC-CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCC-CCCCEEEEEEecC
Q psy15482 1 MKVTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGI-QDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~-~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI-~dgd~l~L~~~~~ 76 (302)
|+|||++.. .+..++|+|+|++||.+||++|+.++|||+++|||+|+|+.++|+ +||++||| ++|+++||....+
T Consensus 25 l~v~v~d~~s~~~~i~l~V~ps~TV~~LK~~I~~k~Gipp~~QRli~ggkll~D~-~TL~~ygI~~~G~t~hL~l~~~ 101 (105)
T 4dbg_A 25 LWVSVEDAQMHTVTIWLTVRPDMTVASLKDMVFLDYGFPPVLQQWVIGQRLARDQ-ETLHSHGVRQNGDSAYLYLLSA 101 (105)
T ss_dssp EEEEEEESSSCCEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECTT-CBTGGGTCCSTTCEEEEEECCC
T ss_pred EEEEEEccCCCCceEEEEECCcChHHHHHHHHHHHhCCCHHHEEEeccCeEccCc-CcHHHcCCCCCCCEEEEEEEec
Confidence 689999832 258899999999999999999999999999999999999988886 99999999 5999999987653
No 67
>1we6_A Splicing factor, putative; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.61 E-value=9e-16 Score=123.52 Aligned_cols=74 Identities=16% Similarity=0.215 Sum_probs=69.3
Q ss_pred CEEEEEeCC---CCeEEEEEeCC-CccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQH---TNECFLLDVSE-DLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~---~g~~~~leV~~-~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ . +|+.++++|++ ++||.+||++|+..+|||+++|+|+|+|+.|+|+ +||++|||++|++|+|+.+..
T Consensus 28 i~i~Vk~-~~~~~g~~~~l~v~~l~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~I~~g~~l~l~~r~~ 105 (111)
T 1we6_A 28 ATIRVSK-PNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDN-MSLAHYNVGAGEILTLSLRER 105 (111)
T ss_dssp EEEEECC-TTCSSSCCEEEEESCSSSBHHHHHHHHHHHTTCCTTTSEEECSSSBCCTT-SBTTTTTCSSSCEEEEECSSC
T ss_pred EEEEEEe-cccCCCcEEEEEecCCCCcHHHHHHHHHHHHCCCHHHeEEEECCEECCCC-CcHHHCCCCCCCEEEEEEEcC
Confidence 6899998 5 78999999998 9999999999999999999999999999999986 999999999999999987753
No 68
>1v86_A DNA segment, CHR 7, wayne state university 128, expressed; ubiquitin fold, structural genomics, D7WSU128E protein; HET: DNA; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.61 E-value=7.6e-16 Score=120.91 Aligned_cols=72 Identities=14% Similarity=0.208 Sum_probs=65.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|+. .++.++|+|++++||.+||++|+..+|||+++|+|+|+|++| |+ .+|++|||++|++|+|+.+..
T Consensus 18 ~~i~Vk~--~g~~~~i~v~~~~TV~~LK~~I~~~tgip~~~QrL~~~Gk~L-dd-~tL~~~~i~~g~~i~lv~~~~ 89 (95)
T 1v86_A 18 VDLKIIW--NKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGLVP-ED-KTLREIKVTSGAKIMVVGSTI 89 (95)
T ss_dssp EEEEEEE--TTEEEEEEECTTSBHHHHHHHHHHHHCSCSTTCCCBSSSBCC-SS-SBHHHHCCCTTEEEEECCSSC
T ss_pred EEEEEEE--CCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEEECCeeC-Cc-CcHHHCCCCCCCEEEEEeccc
Confidence 5677765 689999999999999999999999999999999999999999 55 599999999999999987653
No 69
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.60 E-value=3e-15 Score=128.76 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=70.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|++++++|++++||.+||++|+..+|+|+++|+|+|+|+.|+|+ .||++|||++|++|+|+.+..
T Consensus 21 m~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~QrL~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~~~ 94 (172)
T 3u30_A 21 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 94 (172)
T ss_dssp EEEEEEE-TTTEEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-CBTGGGTCCTTCEEEEEECCC
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEECCcccccc-CCHhHcCCcccceeeeeeccc
Confidence 8999999 9999999999999999999999999999999999999999999996 999999999999999998753
No 70
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.60 E-value=3.6e-15 Score=124.35 Aligned_cols=74 Identities=28% Similarity=0.332 Sum_probs=70.7
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++++|++++||.+||+.|+..+|+|+++|+|+|+|+.|.|+ .||++|||++|++|+|+.+..
T Consensus 1 M~i~vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gip~~~q~L~~~g~~L~d~-~tL~~~~i~~~~~l~l~~~~~ 74 (152)
T 3b08_A 1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp CEEEEEE-TTSCEEEEECCTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECCT
T ss_pred CEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHHHHCcChHHeEEEECCeECcCc-ccHHHhccCCCCeeEEEeecc
Confidence 9999999 8899999999999999999999999999999999999999999886 999999999999999998753
No 71
>3u5e_m 60S ribosomal protein L40; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 3u5i_m 4b6a_m 4a18_K 4a19_K 4a1b_K 4a1d_K 4adx_5 3izc_p 3izs_p 3iz5_p 3izr_p
Probab=99.60 E-value=6.4e-17 Score=133.61 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|++++++|++++||.+||+.|+..+|||+++|+|+|+|++|+|+ .||++|||++|++|+|+.+..
T Consensus 1 M~I~Vk~-~~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~~~~I~~gsti~l~~rl~ 74 (128)
T 3u5e_m 1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 74 (128)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEe-CCCCEEEEEeCCCCCHHHHHHHHHHHhCcChHHEEEEECCEECCCC-CchhhhccCCCCEEEEEEEcC
Confidence 8999999 8999999999999999999999999999999999999999999986 999999999999999988764
No 72
>3q3f_A Ribonuclease/ubiquitin chimeric protein; domain SWAP, oligomerization, ubiquitin insertion, hydrolase binding; 2.17A {Bacillus amyloliquefaciens}
Probab=99.60 E-value=1.5e-15 Score=133.64 Aligned_cols=74 Identities=27% Similarity=0.297 Sum_probs=70.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|++++|+|++++||.+||++|+..+|+|+++|+|+|+|++|+|+ .||++|||++|++|+|+.+..
T Consensus 106 MqI~VKt-l~Gkt~~l~V~~s~TV~~LK~kI~~~~gIp~~~QrLi~~Gk~L~D~-~tL~dygI~~gstI~Lvlrlr 179 (189)
T 3q3f_A 106 GQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 179 (189)
T ss_dssp EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-CBGGGGTCCTTCEEEECCCCC
T ss_pred eeeeeec-CCCCEEEEEeCCCCcHHHHHHHHHhccCCCHHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEEEEcC
Confidence 8999999 9999999999999999999999999999999999999999999996 999999999999999987753
No 73
>1se9_A Ubiquitin family; ubiquitin-like, cell-free, wheat GERM, structural genomics, protein structure initiative, CESG; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.58 E-value=4e-15 Score=122.91 Aligned_cols=74 Identities=11% Similarity=0.123 Sum_probs=66.4
Q ss_pred CEEEEEeCCCCeEE-EEEeCCCccHHHHHHHH-----HhhhCCCC--CCeEEEECCeecCCCcccccccCCCCC------
Q psy15482 1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFC-----EVQSGYPA--HEIAIEFQGVLLQDNKKTLKTHGIQDG------ 66 (302)
Q Consensus 1 MqItV~~~~~g~~~-~leV~~~~TV~dLK~~I-----e~e~gIp~--~~Q~Li~~Gk~L~D~~~TL~~~gI~dg------ 66 (302)
|+|+|++ .+|..+ ++++++++||.+||++| +..+|+|+ ++|+|||+||+|+|+ +||++|+|++|
T Consensus 17 ~~i~~kt-~~G~~i~~l~v~psdTV~~lK~kI~~~~p~dkegiP~~~~qQrLIy~GK~LeD~-~TLsdy~I~~~~~~~~v 94 (126)
T 1se9_A 17 LEIKFRL-TDGSDIGPKAFPDATTVSALKETVISEWPREKENGPKTVKEVKLISAGKVLENS-KTVKDYRSPVSNLAGAV 94 (126)
T ss_dssp EEEEEEE-TTSCEEEEEEECTTCBHHHHHHHHHHHSCTTCSSSCCSGGGEEEEETTEECCTT-SBGGGGSCCTTSCTTCC
T ss_pred EEEEEEE-CCCCEEEeeecCccCHHHHHHHHHHhhcccccccCCCChhhEEEEECCeECcCC-CcHHHcCCCcCCccCCc
Confidence 7899999 999777 79999999999999999 45678997 899999999999996 99999999999
Q ss_pred CEEEEEEecC
Q psy15482 67 DLVLLKHLGS 76 (302)
Q Consensus 67 d~l~L~~~~~ 76 (302)
.++||+.+..
T Consensus 95 ~tmhlVlrl~ 104 (126)
T 1se9_A 95 TTMHVIIQAP 104 (126)
T ss_dssp EEEEEEECCC
T ss_pred EEEEEEeccC
Confidence 5788887754
No 74
>3b08_A Polyubiquitin-C, ubiquitin; protein complex, signaling protein-metal binding protein COM; HET: TRE; 1.70A {Homo sapiens} PDB: 2w9n_A* 3b0a_A* 3axc_A 2zvn_A 2zvo_A 2y5b_B
Probab=99.56 E-value=1.4e-14 Score=120.84 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=69.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||..|+..+|+|++.|+|+|+|+.|.|+ +||++|||++|++|+|+.+.
T Consensus 77 ~~i~Vk~-~~g~~~~~~v~~~~tv~~lK~~i~~~~gi~~~~qrL~~~g~~L~d~-~tL~~~~i~~~~~i~l~~r~ 149 (152)
T 3b08_A 77 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 149 (152)
T ss_dssp EEEEEEE-SSSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGEEEEETTEECCTT-SBTGGGTCCTTCEEEEEECC
T ss_pred cceeeee-cCCCEEEEEeCCCCcHHHHHHHHHHHhCcChhhEEEEECCEECCCC-CCHHHcCCCCCCEEEEEEec
Confidence 6899999 8999999999999999999999999999999999999999999986 99999999999999998875
No 75
>1we7_A SF3A1 protein; structural genomics, ubiquitin-like domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: d.15.1.1 PDB: 1zkh_A
Probab=99.56 E-value=1e-14 Score=118.15 Aligned_cols=74 Identities=14% Similarity=0.319 Sum_probs=67.5
Q ss_pred EEEEEeCC---------CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 2 KVTVSTQH---------TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 2 qItV~~~~---------~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
+|+|+.+. +|+.++++|++++||.+||++|+..+|||+++|+|+|+|+.|.|+ .||++|||++|++|+|+
T Consensus 27 ~l~V~~p~~~~~~~~~L~G~~~~l~v~~~~TV~~LK~~I~~~~gip~~~QrL~~~Gk~L~D~-~tL~~y~i~~g~~i~lv 105 (115)
T 1we7_A 27 SIKVQVPNMQDKTEWKLNGQGLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMASGAVIHLA 105 (115)
T ss_dssp EEEEEECCCSSSCSSCCSSEEEEEEECSCSBTHHHHHHHHHHSSCCTTTEEEEETTEEECTT-SBHHHHTCCSSCEEEEE
T ss_pred EEEEEcCCCccccccccCCeEEEEEECCCCCHHHHHHHHHHHHCCChHHEEEEECCEECCCC-CCHHHCCCCCCCEEEEE
Confidence 57777742 578999999999999999999999999999999999999999986 99999999999999999
Q ss_pred EecC
Q psy15482 73 HLGS 76 (302)
Q Consensus 73 ~~~~ 76 (302)
.+..
T Consensus 106 ~rl~ 109 (115)
T 1we7_A 106 LKER 109 (115)
T ss_dssp ECCC
T ss_pred EEcC
Confidence 8753
No 76
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=99.55 E-value=3.1e-16 Score=133.65 Aligned_cols=74 Identities=26% Similarity=0.325 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+|++ .+|+.++|+|++++||.+||+.|+..+|||+++|+|+|+|++|.|+ .||++|||++|++|+|+.+..
T Consensus 1 MqI~VK~-l~G~~~~l~V~~~~TV~~LK~~I~~~~gip~~~QrLi~~Gk~L~D~-~tL~dygI~~gstL~Lvlrl~ 74 (152)
T 3u5c_f 1 MQIFVKT-LTGKTITLEVESSDTIDNVKSKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRLR 74 (152)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred CEEEEEe-CCCCEEEEEECCCCCHHHHHHHHHHHhCCCHHHEEEEECCEEcccc-CcHHHcCCCCCCEEEEEeecc
Confidence 8999999 8999999999999999999999999999999999999999999986 999999999999999987643
No 77
>4b6w_A Tubulin-specific chaperone; CAP-Gly, ubiquitin-like; HET: MSE; 2.35A {Trypanosoma brucei brucei strain 927}
Probab=99.55 E-value=1.6e-14 Score=111.80 Aligned_cols=74 Identities=12% Similarity=0.082 Sum_probs=64.4
Q ss_pred EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE-------CCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF-------QGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-------~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
+|+|+.. ++...+.+.+++++||++||++|+..+|||+++|+|+| .|+.|+|+ +||++|||++|++|||+-
T Consensus 4 ~v~iths~~~~~~~E~r~~~s~TI~~lK~ki~~~~Gip~~~QrLi~~~~~~~~~g~~l~d~-~tL~~Y~i~~g~~ihlvd 82 (86)
T 4b6w_A 4 KVSLTHSASRMRVPEKRYGLAQTIESIKENVFTHFATPPEYMQLQLIDDRGITIEKNMAND-KQLGYYQCRDEFVIHVVD 82 (86)
T ss_dssp EEEEEETTCSCCEEEEEEETTSBHHHHHHHHHTTSCCCGGGEEEEEECTTSCEEESSCCTT-SBGGGGTCCTTCEEEEEE
T ss_pred EEEEEEcCCCCeEEEEEcCccCcHHHHHHHHHHHHCCCHHHEEEEEecCCCCceeeEcCCC-CCHHHCCCCCCCEEEEEe
Confidence 4666653 45666789999999999999999999999999999997 48888886 999999999999999997
Q ss_pred ecC
Q psy15482 74 LGS 76 (302)
Q Consensus 74 ~~~ 76 (302)
+.+
T Consensus 83 ~~P 85 (86)
T 4b6w_A 83 LQP 85 (86)
T ss_dssp CCC
T ss_pred CCC
Confidence 653
No 78
>3u30_A Ubiquitin, linear DI-ubiquitin; immune system; 2.43A {Homo sapiens}
Probab=99.55 E-value=1.1e-14 Score=125.36 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=68.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|++++++|++++||.+||.+|+..+|+|+++|+|+|+|+.|+|+ +||++|||++|++|||+.+.
T Consensus 97 ~~i~Vk~-~~g~~~~l~v~~~~tV~~lK~~I~~~~gip~~~q~L~~~g~~L~D~-~tL~~y~i~~g~tl~l~~rl 169 (172)
T 3u30_A 97 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 169 (172)
T ss_dssp EEEEEEE-SSCCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCCEEETTEECCTT-SBSGGGTCCTTCEEEECC--
T ss_pred ccceeec-ccCcceeEEecCCCCHHHHHHHHHHHhCCCceeEEEEECCccCCCC-CcHHHhCCCCCCEEEEEEec
Confidence 6789999 8999999999999999999999999999999999999999999986 89999999999999998764
No 79
>2dzj_A Synaptic glycoprotein SC2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.53 E-value=7.3e-15 Score=114.04 Aligned_cols=69 Identities=12% Similarity=0.196 Sum_probs=62.8
Q ss_pred CEEEEEeCCCCeEE--EE-EeCCCccHHHHHHHHHhh-hCCCCCCeEEEEC--CeecCCCcccccccCCCCCCEEEE
Q psy15482 1 MKVTVSTQHTNECF--LL-DVSEDLELENFKAFCEVQ-SGYPAHEIAIEFQ--GVLLQDNKKTLKTHGIQDGDLVLL 71 (302)
Q Consensus 1 MqItV~~~~~g~~~--~l-eV~~~~TV~dLK~~Ie~e-~gIp~~~Q~Li~~--Gk~L~D~~~TL~~~gI~dgd~l~L 71 (302)
|+|+|++ ..|+.+ +| +|+|+.||.+||+.|+.. .|+|+++|+|+|. |++|+|+ +||++|||++|++|++
T Consensus 11 M~I~Vk~-~~g~~~~~~l~~v~~~~TV~~lK~~I~~~~~~i~~~~QrL~~~~~Gk~L~D~-~tL~~y~i~~~stl~~ 85 (88)
T 2dzj_A 11 YEVEILD-AKTREKLCFLDKVEPHATIAEIKNLFTKTHPQWYPARQSLRLDPKGKSLKDE-DVLQKLPVGTTATLYF 85 (88)
T ss_dssp EEEEEEE-SSSCCCCEEEEEECSSCBHHHHHHHHHHHCSSSCTTTCCEESSTTSCCCCTT-CBTTTSSCCSEEEEEE
T ss_pred EEEEEEC-CCCCEEeeEEeEcCCCCcHHHHHHHHHHHhcCCChHHeEEEecCCCcCcCCC-CCHHHcCCCCCCEEEE
Confidence 8999999 766554 68 999999999999999995 8999999999976 9999986 9999999999999987
No 80
>2kjr_A CG11242; UBL, ubiquitin, ubiquitin-like, structural genomics, PSI-2, protein structure initiative; NMR {Drosophila melanogaster}
Probab=99.52 E-value=2.7e-14 Score=112.43 Aligned_cols=70 Identities=21% Similarity=0.268 Sum_probs=61.2
Q ss_pred EEEEEeCCCC--eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC--Ce---ec-CCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQHTN--ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ--GV---LL-QDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~~~g--~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~--Gk---~L-~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.|+|++ ..+ ..++++|++++||++||++|+..+|||+++|+|+|. |+ .| +| ++||++|||++|++|+|+.
T Consensus 17 ~l~It~-s~~~~~~~~~~v~~~~TV~~LK~kI~~~~GiP~~~QrL~~~~~g~~~~~L~~D-~~tL~~Y~i~~gstihlvD 94 (95)
T 2kjr_A 17 KVNVSN-SHNDAVAFEVKLAKDLTVAQLKTKLEILTGGCAGTMKVQVFKGDTCVSTMDNN-DAQLGYYANSDGLRLHVVD 94 (95)
T ss_dssp EEEEEE-SSCSCEEEEEEEETTCBHHHHHHHHHHHHCSCTTTEEEEEEETTEEEEECCCT-TSBHHHHCCSSSCEEEEEE
T ss_pred EEEEEE-CCCCceEEEEEeCccCHHHHHHHHHHHHHCcCHHHeEEEEecCCcccceeCCC-CCCHhHCCcCCCCEEEEEC
Confidence 577777 443 588999999999999999999999999999999998 55 45 55 4999999999999999974
No 81
>2kj6_A Tubulin folding cofactor B; methods development, NESG, solution PSI-2, structural genomics, protein structure initiative; NMR {Arabidopsis thaliana}
Probab=99.51 E-value=3.3e-14 Score=112.40 Aligned_cols=73 Identities=16% Similarity=0.147 Sum_probs=62.0
Q ss_pred EEEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---ee---c-CCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---VL---L-QDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k~---L-~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.|+|++. ..+..++++|++++||++||++|+..+|||+++|+|+|.| +. | +| ++||++|||++|++|+|+.
T Consensus 16 ~l~It~s~~~~~~~e~~v~~~~TV~~LK~kIe~~~Gip~~~QrLi~~g~~g~~~~~L~~D-~~tL~~Y~I~~g~~Ihlvd 94 (97)
T 2kj6_A 16 HLHITHANLKSFSADARFSPQMSVEAVKEKLWKKCGTSVNSMALELYDDSGSKVAVLSDD-SRPLGFFSPFDGFRLHIID 94 (97)
T ss_dssp EEEEEETTSSCCCEEEEECTTCCHHHHHHHHHHHHCCCTTSEEEEEECSSSCBCCCSSGG-GSCHHHHCCCSCCEEEEEE
T ss_pred EEEEEECCCCceEEEEEeCCCChHHHHHHHHHHHHCcCHHHeEEEEecCCCcccceecCC-cCCHHHCCCCCCCEEEEEe
Confidence 4677762 2235789999999999999999999999999999999988 33 4 55 5999999999999999987
Q ss_pred ec
Q psy15482 74 LG 75 (302)
Q Consensus 74 ~~ 75 (302)
..
T Consensus 95 ~~ 96 (97)
T 2kj6_A 95 LD 96 (97)
T ss_dssp CC
T ss_pred CC
Confidence 53
No 82
>2dzm_A FAS-associated factor 1; ubiquitin-like domain, HFAF1, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.49 E-value=2.6e-14 Score=113.65 Aligned_cols=72 Identities=11% Similarity=0.117 Sum_probs=64.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE--CCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF--QGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~--~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|.++++. .+|+.++|+|++++||++||++|+.++|||+++|+|+| .|+ |+|+ .+|++|+|+.|++|||+...
T Consensus 9 m~~~~vk-~~Gk~~~v~v~~~~TV~~LK~~I~~~tgIpp~~QkLi~~~~gk-L~D~-~tLs~~~I~~gstL~lvl~~ 82 (100)
T 2dzm_A 9 MLDFRVE-YRDRNVDVVLEDTCTVGEIKQILENELQIPVSKMLLKGWKTGD-VEDS-TVLKSLHLPKNNSLYVLTPD 82 (100)
T ss_dssp EEEEEEE-CSSCEEEEEEETTSBHHHHHHHHHHHHCCCTTTCCEECCSSSC-CCTT-SBHHHHCCCSEEEEEECCSS
T ss_pred eEEEEEE-eCCeEEEEEECCCCcHHHHHHHHHHHHCCChhHeEEEccCCCC-CCCc-CCHHHcCCCCCCEEEEEecC
Confidence 5667777 89999999999999999999999999999999999996 566 8885 89999999999999997654
No 83
>1wf9_A NPL4 family protein; beta-grAsp fold like domain, hypothetical protein, structural genomics, NPPSFA; NMR {Arabidopsis thaliana} SCOP: d.15.1.1
Probab=99.48 E-value=5.5e-14 Score=112.64 Aligned_cols=74 Identities=14% Similarity=0.210 Sum_probs=66.0
Q ss_pred CEEEEEeCCCCeEEEEEeC-CCccHHHHHHHHHhhhCCCCCCeEEEECCe-----------ec----CCCcccccccCCC
Q psy15482 1 MKVTVSTQHTNECFLLDVS-EDLELENFKAFCEVQSGYPAHEIAIEFQGV-----------LL----QDNKKTLKTHGIQ 64 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~-~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk-----------~L----~D~~~TL~~~gI~ 64 (302)
|+|+|++ .+|.. .|+|+ +++||.+||++|+..+|||+++|+|+|+|+ .| .| ++||++|||+
T Consensus 8 M~irvrs-~~G~~-~v~v~~~~~Tv~~LK~kI~~~~gip~~~QrL~~~~~~~~~k~~~~~~~l~~~l~d-~~tL~~~gi~ 84 (107)
T 1wf9_A 8 TMLRVRS-RDGLE-RVSVDGPHITVSQLKTLIQDQLQIPIHNQTLSTNRNLLLAKSPSDFLAFTDMADP-NLRISSLNLA 84 (107)
T ss_dssp EEEEEEC-SSCEE-EEEECCTTSBHHHHHHHHHHHSCCCTTTCCCBSSGGGGTCCSHHHHTTCCSSCCT-TCBGGGTCCC
T ss_pred EEEEEEC-CCCCE-EEEECCCCCcHHHHHHHHHHHhCcCcccCEEEECCccccccCccccccccccCCC-CCCHHHCCCC
Confidence 7899999 77865 79999 999999999999999999999999999998 43 55 4899999999
Q ss_pred CCCEEEEEEecCC
Q psy15482 65 DGDLVLLKHLGSY 77 (302)
Q Consensus 65 dgd~l~L~~~~~~ 77 (302)
+||+|||+....+
T Consensus 85 ~G~~L~l~~~~~~ 97 (107)
T 1wf9_A 85 HGSMVYLAYEGER 97 (107)
T ss_dssp TTCEEECCCSSCC
T ss_pred CCCEEEEEeCCCC
Confidence 9999999877543
No 84
>3ai5_A Yeast enhanced green fluorescent protein, ubiquit; ubiquitin, fusion protein, fluore protein, transcription; HET: CR2; 1.40A {Aequorea victoria} PDB: 3ako_B*
Probab=99.47 E-value=9.8e-14 Score=130.36 Aligned_cols=73 Identities=29% Similarity=0.337 Sum_probs=68.6
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.++++|++++||.+||++|+..+|||+++|+|+|+|++|+|+ +||++|||++|++|+|+.+.
T Consensus 234 MqI~VKt-l~Gk~~~leV~~s~TV~dLK~kI~~~~GIp~~~QRLi~~Gk~L~D~-~TLsdygI~~gstL~LvlRL 306 (307)
T 3ai5_A 234 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSDYNIQKESTLHLVLRL 306 (307)
T ss_dssp EEEEEEC-TTSCEEEEEECTTCBHHHHHHHHHHHHCCCGGGCEEEETTEECCTT-SBTGGGTCCTTCEEEEEC--
T ss_pred EEEEEEe-CCCCEEEEEECCCCcHHHHHHHHHHHHCcChHHEEEEeCCeecCCC-CCHHHcCCCCCCEEEEEEeC
Confidence 7899999 8899999999999999999999999999999999999999999986 99999999999999998763
No 85
>1v6e_A Cytoskeleton-associated protein 1; tubulin-specific chaperone B, tubulin folding cofactor B, microtubule, ubiquitin-like fold, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.45 E-value=1.6e-13 Score=107.35 Aligned_cols=72 Identities=25% Similarity=0.284 Sum_probs=61.3
Q ss_pred EEEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---ee---c-CCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---VL---L-QDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k~---L-~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.|+|+. ... ..++++|++++||++||++|+..+|||+++|+|+|.| +. | +|+ +||++|||++|++|||+.
T Consensus 9 ~l~I~~-~~~~~~~~~~v~~~~TV~~lK~ki~~~~gip~~~qrL~~~~~~g~~~~~l~~D~-~tL~~y~i~~g~~l~v~d 86 (95)
T 1v6e_A 9 MVFISS-SLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQED-ALLGSYPVDDGCRIHVID 86 (95)
T ss_dssp EEEEEE-TTSSSCEEEEECTTSBHHHHHHHHHHHTCSCTTTCBCEEECSSSCEEEECCCSS-SBTTSSSCCTTCEEEEBC
T ss_pred EEEEEE-CCCCeeEEEEcCccCHHHHHHHHHHHHHCCCHHHeEEEEeCCCCccccccCCCc-CCHhHCCCCCCCEEEEEE
Confidence 466766 333 2689999999999999999999999999999999986 54 4 564 999999999999999986
Q ss_pred ec
Q psy15482 74 LG 75 (302)
Q Consensus 74 ~~ 75 (302)
..
T Consensus 87 ~~ 88 (95)
T 1v6e_A 87 HS 88 (95)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 86
>2xzm_9 RPS31E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_9
Probab=99.41 E-value=1.8e-14 Score=126.60 Aligned_cols=68 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ ++|++++|+|++++||.+||++|+..+|||+++|+|+|+|++|.|+ .||+ +|++|||+.+.
T Consensus 1 MqI~VKt-L~GktitLeV~~sdTV~~LK~kI~~keGIP~~qQRLIf~GK~LeD~-~TLs-----~~STLhLvlRL 68 (189)
T 2xzm_9 1 MQVQVKT-LEGETKIYTLEQGTSVLDLKSQISQDMGFEIDMMTLVNNGFIAPNT-ELVT-----DDVTYYLSLKL 68 (189)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred CEEEEEc-CCCCEEEEEECCcChHHHHHHHHHHHhCcChhHEEEEecCeECCCC-Cccc-----CCCEEEEEEec
Confidence 9999999 9999999999999999999999999999999999999999999996 8998 89999998764
No 87
>2kzr_A Ubiquitin thioesterase OTU1; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative, hydrolase; NMR {Mus musculus}
Probab=99.40 E-value=4.7e-13 Score=102.79 Aligned_cols=73 Identities=21% Similarity=0.248 Sum_probs=64.4
Q ss_pred CEEEEEeCCCCeEEEEE-eCCCccHHHHHHHHHhhhCCCCCCeEEEEC--CeecC--CCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLD-VSEDLELENFKAFCEVQSGYPAHEIAIEFQ--GVLLQ--DNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~le-V~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~--Gk~L~--D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+. .++ |++++||.+||+.|+.++|||++.|+|+|+ +|+|. |+++||++|||++|++|+|....
T Consensus 1 m~i~vr~-~~G~~-~v~~l~~~~Tv~~Lk~~I~~~~gi~~~~qrL~~~~p~k~l~l~~~~~tL~~~gl~~g~~l~v~~~~ 78 (86)
T 2kzr_A 1 WRVRCKA-KGGTH-LLQGLSSRTRLRELQGQIAAITGIAPGSQRILVGYPPECLDLSDRDITLGDLPIQSGDMLIVEEDQ 78 (86)
T ss_dssp CCEEEEE-TTEEE-EECSCCTTCBHHHHHHHHHHHTCCCTTTCCCEESSCCCCCCCCCSSCBTTTSSCCTTCEEECCCCS
T ss_pred CEEEEEc-CCCCE-EeeecCCCCCHHHHHHHHHHHhCCCccceEEEeCCCCcccccCCCCCCHHHcCCCCCCEEEEEeCC
Confidence 8999999 88854 588 999999999999999999999999999997 48874 34589999999999999997654
No 88
>1t0y_A Tubulin folding cofactor B; ubiquitin-like, cytoskeleton, microtubule, CESG, structural genomics, protein structure initiative, PSI; NMR {Caenorhabditis elegans} SCOP: d.15.1.1
Probab=99.38 E-value=1.2e-12 Score=107.22 Aligned_cols=72 Identities=18% Similarity=0.282 Sum_probs=61.5
Q ss_pred EEEEEeCCCCe-EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC---e---ec-CCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQHTNE-CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG---V---LL-QDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~~~g~-~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G---k---~L-~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.|+|++ ..+. .++++|++++||++||++|+..+|||+++|+|+|.| + .| +| ++||++|||++|++|||+.
T Consensus 8 ~l~V~~-~~~~~~~e~~v~~~~TV~~lK~ki~~~~Gip~~~qrL~~~g~~~~~~~~l~~D-~~tL~~y~i~~g~~ihvvd 85 (122)
T 1t0y_A 8 DLEITT-NATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDG-AKSLKDLGVRDGYRIHAVD 85 (122)
T ss_dssp EEEEEE-SSCCSCEEEEEETTSBHHHHHHHHHHHHCCCTTTEEEEEECSSSSEEEECCCC-SSBTTTTTCCSSEEEEEEE
T ss_pred EEEEEE-CCCCccEEEEeCCCCcHHHHHHHHHHHhCCCHHHeEEEEecCCCccccccCCC-cCCHHHCCCCCCCEEEEEe
Confidence 566776 3332 688999999999999999999999999999999987 4 34 55 4999999999999999987
Q ss_pred ec
Q psy15482 74 LG 75 (302)
Q Consensus 74 ~~ 75 (302)
..
T Consensus 86 ~~ 87 (122)
T 1t0y_A 86 VT 87 (122)
T ss_dssp CT
T ss_pred CC
Confidence 64
No 89
>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}
Probab=99.34 E-value=1.2e-12 Score=123.85 Aligned_cols=73 Identities=10% Similarity=0.112 Sum_probs=64.2
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
.|+|+ .+|+.|+|+|++++||++||+.|+..+|||+++|+|+ |+|++|+|+ .+|++|||++|++|+|+.....
T Consensus 7 ~i~Vk--~~g~~~~v~v~~~~Tv~~lK~~I~~~tgVpp~~QkLi~~k~~Gk~l~D~-~~L~~~~ik~g~~l~L~gs~~~ 82 (320)
T 3shq_A 7 VVIVK--WSGKEYPVDLTDQDTVEVLRHEIFRKTQVRPERQKLLNLKYKGKTAADN-VKISALELKPNFKLMMVGSTEA 82 (320)
T ss_dssp EEEEE--ETTEEEEEEEETTSBHHHHHHHHHHHHCCCGGGCEETTCBSSSSBCCTT-SBTTSSCCC--CEEEEECCCC-
T ss_pred EEEEE--ECCEEEEEEECCCCcHHHHHHHHHHHHCcCHHHeEEeecccCCcccCcc-ccHHHcCCCCCCEEEEEccchh
Confidence 45555 4899999999999999999999999999999999999 899999996 8999999999999999977543
No 90
>1wjn_A Tubulin-folding protein TBCE; ubiquitin-like domain, progressive motor neuropathy, structural genomics; NMR {Mus musculus} SCOP: d.15.1.1
Probab=99.30 E-value=8.6e-12 Score=97.79 Aligned_cols=74 Identities=12% Similarity=0.347 Sum_probs=64.0
Q ss_pred EEEEEeC--CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC-------eecCCCcccccccCCCCCCEEEEE
Q psy15482 2 KVTVSTQ--HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG-------VLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 2 qItV~~~--~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G-------k~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
+|+|+++ .+++.+.+.+++++||.+||.+|+..+|+|+..|+|+|.+ ..|.|+.++|+.|||.+|++|||.
T Consensus 11 ~l~I~~~~~~~~~~~e~~l~~~~TV~~LK~~i~~~~gip~~~q~L~~~~~~~~~~~~~L~~d~~~L~~y~i~~G~~I~V~ 90 (97)
T 1wjn_A 11 TLKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELENDLQPLQFYSVENGDCLLVR 90 (97)
T ss_dssp EEEEEESSCSSSCCEEEEEETTSBHHHHHHHHHTTTTCCTTTCEEEEECTTSCSCEEECCCSSSBSGGGTCCTTCEEEEE
T ss_pred EEEEEecCCCCCcEEEEECCCCCCHHHHHHHHHHHHCCChhHeEEEEEcCCCCceeeccCCCcccHhhcCCCCCCEEEEE
Confidence 4667764 5688899999999999999999999999999999999873 236666799999999999999998
Q ss_pred Eec
Q psy15482 73 HLG 75 (302)
Q Consensus 73 ~~~ 75 (302)
...
T Consensus 91 d~~ 93 (97)
T 1wjn_A 91 WSG 93 (97)
T ss_dssp CCS
T ss_pred ecC
Confidence 754
No 91
>2io1_B Small ubiquitin-related modifier 3 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.60A {Homo sapiens} SCOP: d.15.1.1
Probab=99.30 E-value=7.7e-12 Score=98.17 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=68.2
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|+++|++++||+|+++.+.
T Consensus 8 i~ikVk~-~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~~ 80 (94)
T 2io1_B 8 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ 80 (94)
T ss_dssp EEEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTCEEEEEECC
T ss_pred EEEEEEC-CCCCEEEEEECCCCHHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence 5677777 7899999999999999999999999999999999999999999986 89999999999999998865
No 92
>1wm3_A Ubiquitin-like protein SMT3B; ubiquitin fold, half-open barrel, two helices, protein transport; 1.20A {Homo sapiens} SCOP: d.15.1.1 PDB: 1wm2_A 3uin_B 3uio_B 2ckh_B
Probab=99.26 E-value=2e-11 Score=90.85 Aligned_cols=70 Identities=13% Similarity=0.241 Sum_probs=65.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
|+|.|++ .+|+.+.+.|.+++++..|+...+++.|+|+++++|+|+|+.|.++ .|.++|++++||+|++.
T Consensus 2 i~lkV~~-~~g~~v~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~ 71 (72)
T 1wm3_A 2 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVF 71 (72)
T ss_dssp EEEEEEC-TTSCEEEEEECTTSCTHHHHHHHHHHHTCCTTTCEEEETTEECCTT-CCTTTTTCCTTEEEEEE
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEE
Confidence 5678887 7899999999999999999999999999999999999999999986 89999999999999985
No 93
>2io0_B Small ubiquitin-related modifier 2 precursor; SUMO, SENP, ULP, complex, protein binding, hydrolase; 2.30A {Homo sapiens} SCOP: d.15.1.1
Probab=99.21 E-value=4.8e-11 Score=93.10 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=67.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|.|++ .+|+.+.+.|.+++++..|+..++++.|+|+++++|+|+|+.|.++ +|.++|++++||+|.++...
T Consensus 6 i~ikVk~-~~g~~v~~~vk~~t~l~kl~~~y~~~~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q 78 (91)
T 2io0_B 6 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ 78 (91)
T ss_dssp EEEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHTTCCSTTEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence 4567777 7889999999999999999999999999999999999999999986 89999999999999998764
No 94
>3a4r_A Nfatc2-interacting protein; ubiquitin fold, coiled coil, cytoplasm, methylation, nucleus, transcription; 1.00A {Mus musculus} PDB: 3a4s_C 3rd2_A
Probab=99.19 E-value=8e-11 Score=89.29 Aligned_cols=70 Identities=20% Similarity=0.367 Sum_probs=64.6
Q ss_pred CEEEEEeCCCCe-EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 1 MKVTVSTQHTNE-CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 1 MqItV~~~~~g~-~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
|+|.|++ .+|+ .+.+.|.+++++..|+...+.+.|+++++++|+|+|+.|.++ +|.++|++++||+|++.
T Consensus 8 i~ikV~~-~~g~~~i~~~i~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~~l~medgD~Idv~ 78 (79)
T 3a4r_A 8 LRLRVQG-KEKHQMLEISLSPDSPLKVLMSHYEEAMGLSGHKLSFFFDGTKLSGK-ELPADLGLESGDLIEVW 78 (79)
T ss_dssp EEEEEEC-SSTTCEEEEEECTTSCHHHHHHHHHHHHTCTTCCCEEEETTEECCSC-CCHHHHTCCTTCEEEEE
T ss_pred EEEEEEe-CCCCEEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence 4677777 7784 889999999999999999999999999999999999999986 89999999999999985
No 95
>2d07_B Ubiquitin-like protein SMT3B; hydrolase; 2.10A {Homo sapiens} SCOP: d.15.1.1 PDB: 2rpq_A 2awt_A 2io3_B 2iyd_B 1u4a_A 2k1f_A
Probab=99.15 E-value=1.2e-10 Score=90.98 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=66.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|.|++ .+|+.+.+.|.+++++..|+..++.+.|+++++++|+|+|+.|.++ .|+++|++.+||+|+++...
T Consensus 18 i~ikV~~-~~g~~i~~~v~~~t~l~kl~~~y~~~~gi~~~~~rf~fdG~~l~~~-~Tp~dl~medgD~Idv~~~q 90 (93)
T 2d07_B 18 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ 90 (93)
T ss_dssp EEEEEEC-TTSCEEEEEEETTSCHHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred EEEEEEC-CCCCEEEEEEccCCHHHHHHHHHHHHhCCCccceEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence 3566766 6888899999999999999999999999999999999999999986 89999999999999998764
No 96
>1wz0_A Ubiquitin-like protein SMT3B; SUMO-2, ubiquitin-like molecule, structural genomics, sentrin2, NPPFSA; NMR {Homo sapiens} SCOP: d.15.1.1
Probab=99.10 E-value=1.6e-10 Score=92.37 Aligned_cols=73 Identities=12% Similarity=0.225 Sum_probs=67.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|.|++ .+|+.+.+.|.+++++..|+..+..+.|+++++++|+|+|+.|.++ .|.++|++++||+|+++...
T Consensus 25 I~IkVk~-~~g~~i~~kVk~~t~l~kL~~~y~ek~gi~~~~~rf~FdG~~l~~~-~Tp~dl~medgD~Idv~~~q 97 (104)
T 1wz0_A 25 INLKVAG-QDGSVVQFKIKRHTPLSKLMKAYCERQGLSMRQIRFRFDGQPINET-DTPAQLEMEDEDTIDVFQQQ 97 (104)
T ss_dssp EEEEEEC-SSSCEEEEEECTTSCHHHHHHHHHHHHTCCTTTSCEESSSSBCCTT-SCTTTTTCCTTEEEEECCCC
T ss_pred EEEEEEC-CCCCEEEEEEcCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEec
Confidence 4677777 7888899999999999999999999999999999999999999986 89999999999999998654
No 97
>2k8h_A Small ubiquitin protein; SUMO, post-translational modifier, signaling protein; NMR {Trypanosoma brucei}
Probab=99.04 E-value=2.2e-10 Score=92.44 Aligned_cols=73 Identities=15% Similarity=0.246 Sum_probs=67.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+|++ .+|+.+.+.|.+++++..|+..+..+.|+|+++++|+|+|+.|.++ +|.++|++++||+|+++...
T Consensus 27 I~IkVk~-~~g~~i~fkVk~~t~l~kL~~ay~ek~gi~~~~~rfiFdG~~L~~~-~Tp~dl~mEDgD~Idv~~~q 99 (110)
T 2k8h_A 27 VAVKVVN-ADGAEMFFRIKSRTALKKLIDTYCKKQGISRNSVRFLFDGTPIDET-KTPEELGMEDDDVIDAMVEQ 99 (110)
T ss_dssp EEEEEEE-TTSCCEEEEECTTSSHHHHHHHHHHHHTCCSSSCEEESSSCBCCSS-SHHHHHHCSSEEEEEEECCC
T ss_pred EEEEEEC-CCCCEEEEEECCCChHHHHHHHHHHHhCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEEcc
Confidence 4677887 7888899999999999999999999999999999999999999986 89999999999999998764
No 98
>2eke_C Ubiquitin-like protein SMT3; UBC9, SUMO binding motif, SBM, ligase/protein binding complex; 1.90A {Saccharomyces cerevisiae} SCOP: d.15.1.1
Probab=98.99 E-value=1.2e-09 Score=87.66 Aligned_cols=71 Identities=13% Similarity=0.261 Sum_probs=64.6
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
+|.|++ +|+.+.+.|.+++++..|+..+..+.|+++++++|+|+|+.|.++ +|.++|++++||+|.++...
T Consensus 33 ~IkV~~--~g~~i~fkIk~tt~l~kL~~ay~ek~gi~~~~~rF~FdG~rl~~~-~Tp~dl~medgD~Idv~~~q 103 (106)
T 2eke_C 33 NLKVSD--GSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ 103 (106)
T ss_dssp EEEEEC--SSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECC
T ss_pred EEEEec--CCcEEEEEeCCCCHHHHHHHHHHHHhCCCcccEEEEECCeEcCCC-CCHHHcCCCCCCEEEEEeec
Confidence 455555 788889999999999999999999999999999999999999986 89999999999999998764
No 99
>3kyd_D Small ubiquitin-related modifier 1; SUMO, thioester, adenylation, inhibitor, TETR intermediate, ligase, nucleus, phosphoprotein; HET: VMX; 2.61A {Homo sapiens} SCOP: d.15.1.1
Probab=98.66 E-value=1e-07 Score=77.32 Aligned_cols=71 Identities=21% Similarity=0.324 Sum_probs=64.2
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+|.|++ .+|..+.+.|.+++++..|+.......|+++.+++++|+|+.|.++ .|.+++++.+||+|.+...
T Consensus 42 ~LKV~~-qdg~ev~fkIk~tt~L~KLm~aY~er~Gl~~~~irFlFDG~rI~~~-~TP~dL~MEDgD~IdV~~~ 112 (115)
T 3kyd_D 42 KLKVIG-QDSSEIHFKVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADN-HTPKELGMEEEDVIEVYQE 112 (115)
T ss_dssp EEEEEC-TTSCEEEEEEETTSCTHHHHHHHHHHHTCCTTSEEEEETTEECCTT-CCTTTTTCCTTCEEEEEEC
T ss_pred EEEEEc-CCCCEEEEEEccCChHHHHHHHHHHHhCCChhhEEEEECCeECCCC-CCHHHcCCCCCCEEEEEee
Confidence 345555 6678889999999999999999999999999999999999999986 8999999999999999765
No 100
>2pjh_A Protein NPL4, nuclear protein localization protein 4 homolog; UFD1, NPL4, AAA, protein binding, transport protein; NMR {Mus musculus}
Probab=98.54 E-value=5.1e-08 Score=74.02 Aligned_cols=71 Identities=14% Similarity=0.231 Sum_probs=56.6
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee---cC-CCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL---LQ-DNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~---L~-D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|.|.|++ .+..+.|+|++++|+.+|+.+|.+.++++++.|.|++.-.+ |. +.+.+|+++||+.||+|+|..
T Consensus 5 m~lRvrs--~~G~~Ri~v~~~~t~~~L~~~I~~~~~i~~~~~~l~~~~~p~~~l~~~~~~~l~~lgl~hGd~l~l~~ 79 (80)
T 2pjh_A 5 IIIRVQS--PDGVKRITATKRETAATFLKKVAKEFGFQNNGFSVYINRNKTGEITASSSKSLHLLKIKHGDLLFLFP 79 (80)
T ss_dssp CCCEEEC--SSEEEECCCCSSCCHHHHHHHHHHHTCCCTTTCCCCCSCCGGGGSSSCCCCTTTTTCCCTTCCEEC--
T ss_pred EEEEEEC--CCCCEEEEcCCcChHHHHHHHHHHHcCCCCCcceEEecCCCCCcccCCCCCCHHHcCCCCCCEEEEec
Confidence 5567777 34477799999999999999999999999999888765544 31 234899999999999999853
No 101
>3pge_A SUMO-modified proliferating cell nuclear antigen; DNA replication, DNA binding protein; 2.80A {Saccharomyces cerevisiae}
Probab=98.47 E-value=3.7e-07 Score=80.71 Aligned_cols=73 Identities=10% Similarity=0.236 Sum_probs=65.6
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+...+|..+.+.|.+++++..|+.......|+|+.++|++|+|+.|.++ .|.+++++.+||+|.+....-
T Consensus 30 I~LkV~~~g~~v~fkIk~~t~l~kL~~ay~er~Gi~~~~~RF~FdG~rI~~~-~TP~dL~MEdgD~Idv~~~q~ 102 (200)
T 3pge_A 30 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI 102 (200)
T ss_dssp EEEEEECSSCEEEEEECTTSCTHHHHHHHHHHHSSCGGGEEEEETTEECCTT-CCTTTTTCCTTEEEEEEECCS
T ss_pred EEEEEecCCCEEEEEEecCCHHHHHHHHHHHHhCCChhhEEEEECCEEcCCC-CCHHHcCCCCCCEEEEEeccC
Confidence 4444435788899999999999999999999999999999999999999986 999999999999999987654
No 102
>3tix_A Ubiquitin-like protein SMT3, RNA-induced transcri silencing complex protein TAS3; PIN, rossmann fold, SPOC, alpha-helical hairpin, heterochrom silencing, RITS, RNAI, argonaute; 2.90A {Saccharomyces cerevisiae}
Probab=98.42 E-value=4e-07 Score=79.85 Aligned_cols=73 Identities=10% Similarity=0.249 Sum_probs=65.9
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
+|+|+...+|..+.+.|.+++++..|+.......|+++.+++++|+|+.|.++ .|.+++++.|||+|.+....
T Consensus 57 ~InLKVk~dG~eV~FKIKrtTpL~KLmeAYcERqGL~~~sIRFLFDGqRI~~d-dTPeDLdMEDGDtIDV~leQ 129 (207)
T 3tix_A 57 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLTFLYDGIEIQAD-QTPEDLDMEDNDIIEAHREQ 129 (207)
T ss_dssp EEEEEEECSSCEEEEEEETTSCTHHHHHHHHHHTTCCGGGSCEEETTEECCSS-CCTTTTTCCTTEEEEECCCC
T ss_pred cEEEEEecCCCEEEEEEccCChHHHHHHHHHHHhCCCcccEEEEECCeecCCC-CCHHHcCCCCCCEEEEEEec
Confidence 35555545788899999999999999999999999999999999999999986 89999999999999998764
No 103
>4efo_A Serine/threonine-protein kinase TBK1; ubiquitin like domain, transferase; 1.77A {Homo sapiens}
Probab=98.22 E-value=2.9e-06 Score=66.40 Aligned_cols=71 Identities=8% Similarity=0.079 Sum_probs=52.3
Q ss_pred EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecC-CCcccccccCCC-CCCEEEEEEe
Q psy15482 4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-DNKKTLKTHGIQ-DGDLVLLKHL 74 (302)
Q Consensus 4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~-D~~~TL~~~gI~-dgd~l~L~~~ 74 (302)
.|-.-..+..++++|.++.||..||+.|++++|||+++|+|+|.|+.|. +....-..|--. ...-|+|..+
T Consensus 16 HVf~~~~a~~h~v~I~~~etv~~~ke~V~eqTgIp~~~Q~LL~eg~~l~l~p~~~a~~~p~Tt~~~Pl~L~s~ 88 (94)
T 4efo_A 16 HVFSLQQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSL 88 (94)
T ss_dssp EEEETTTTEEEEEEEETTCBHHHHHHHHHHHHCCCGGGEEEEETTEEECCCTTCBGGGSCCCBTTBCEEEEEC
T ss_pred EEEEcccceEEEEEeccchHHHHHHHHHHHHhCCCHHHHHHHhCCCccccCCCCccccCCCCCCCCCEEEEec
Confidence 3433256888999999999999999999999999999999999998874 322344444322 2344555544
No 104
>3goe_A DNA repair protein RAD60; SUMO-like domain, sumoylation, SUMO, genome stability, DNA damage, DNA recombination, nucleus; HET: DNA; 0.97A {Schizosaccharomyces pombe} PDB: 3rcz_A*
Probab=98.06 E-value=3e-05 Score=58.47 Aligned_cols=66 Identities=20% Similarity=0.334 Sum_probs=58.7
Q ss_pred EEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 5 VSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 5 V~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
++. +....+.+.|.++++|.+|-..--.+.|||++ ..+|.|.|..|..+ .|+.+|+++|||.|-++
T Consensus 14 ~~~-~~~~dl~f~I~~~t~v~kLi~ayc~~~~I~~~~~IrllFDGdRLdp~-~tp~DlemeD~D~IDvm 80 (82)
T 3goe_A 14 LRS-SKSEDLRLSIPVDFTVKDLIKRYCTEVKISFHERIRLEFEGEWLDPN-DQVQSTELEDEDQVSVV 80 (82)
T ss_dssp EEE-SSSCCEEEEEETTSBHHHHHHHHHHHHTCCCCTTCEEEETTEECCTT-SBGGGSSCCTTCEEEEE
T ss_pred hhc-cCCCCeEEEecCCCCHHHHHHHHHHHcCCCcCceEEEEEcCcccCcc-CChhhhCCcCCceeeee
Confidence 455 55556778999999999999999999999999 99999999999886 89999999999999875
No 105
>3v7o_A Minor nucleoprotein VP30; ssgcid, seattle structural genomics center for infectious disease, SMT, transcription; 2.25A {Reston ebolavirus}
Probab=98.06 E-value=5.3e-07 Score=80.12 Aligned_cols=72 Identities=11% Similarity=0.267 Sum_probs=0.0
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|.| . .+|..+.+.|.+++.+..|+....+..|+++++++++|+|+.|.++ .|.++++++|||+|.+....
T Consensus 22 InLKV-~-qdGseV~FKIKrtTpL~KLM~AYcERqGLs~~siRFLFDGqRI~dd-dTPadL~MEDGDtIDV~leQ 93 (227)
T 3v7o_A 22 INLKV-S-DGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQ 93 (227)
T ss_dssp ---------------------------------------------------------------------------
T ss_pred EEEEE-e-CCCCEEEEEEccCChHHHHHHHHHHHhCCCccceEEEECCEecCCC-CCHHHcCCCCCCEEEEEecc
Confidence 34556 4 5788889999999999999999999999999999999999999986 89999999999999998654
No 106
>2jxx_A Nfatc2-interacting protein; nuclear factor of activated T-cells, cytoplasmic 2- interacting protein, ubiquitin like homologue; NMR {Homo sapiens}
Probab=97.96 E-value=3.7e-05 Score=60.37 Aligned_cols=68 Identities=19% Similarity=0.341 Sum_probs=60.0
Q ss_pred EEEEeCCCC-eEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 3 VTVSTQHTN-ECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 3 ItV~~~~~g-~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
|.|+. .+| +.+.+.|.+++.+.-|......+.|++++..+++|+|..|..+ .|.+++++.|||+|.+.
T Consensus 28 LkV~~-~dg~~~v~fkIk~~t~l~kLm~aY~~~~g~~~~~vrF~FDG~rI~~~-~TP~dLdMEDgD~IDv~ 96 (97)
T 2jxx_A 28 LRVQG-KEKHQTLEVSLSRDSPLKTLMSHYEEAMGLSGRKLSFFFDGTKLSGR-ELPADLGMESGDLIEVW 96 (97)
T ss_dssp EEEEE-SSSSCEEEEEEETTSCHHHHHHHHHHHTTCSSSCCEEEETTEECCSC-SCHHHHTCCTTEEEEEE
T ss_pred EEEEc-CCCCEEEEEEECCCChHHHHHHHHHHHHCCCcccEEEEECCEEcCCC-CCHHHcCCCCCCEEEEe
Confidence 44444 456 4788999999999999999999999999999999999999886 89999999999999874
No 107
>2bps_A YUKD protein; ubiquitin-like protein, ubiquitin; 2.7A {Bacillus subtilis}
Probab=97.91 E-value=2.4e-05 Score=59.55 Aligned_cols=70 Identities=14% Similarity=0.191 Sum_probs=58.6
Q ss_pred CEEEEEeC---CCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-----CCeEEEECCeecCCCcccccccCCCCCCEEEE
Q psy15482 1 MKVTVSTQ---HTNECFLLDVSEDLELENFKAFCEVQSGYPA-----HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLL 71 (302)
Q Consensus 1 MqItV~~~---~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-----~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L 71 (302)
|.|.|+.+ -.++.+.|.|+...||..|+..+.+..+++. .+.++.-+|..|.++ ++|++|+|++||.|.+
T Consensus 3 ~yI~ITidl~~y~~~~~DLRIP~~~tvK~Li~~l~ea~~l~~~~~~~~~irv~NK~~~L~~~-~~L~d~~ItnGD~Lei 80 (81)
T 2bps_A 3 SYIDITIDLKHYNGSVFDLRLSDYHPVKKVIDIAWQAQSVSMPPREGHWIRVVNKDKVFSGE-CKLSDCGITNGDRLEI 80 (81)
T ss_dssp CEEEEEEECTTTTCCEEEEEEETTSBTTHHHHHHHHHSCCCSCCCTTCEEEEGGGTEEEETT-SBTGGGTCCTTCEEEE
T ss_pred cEEEEEEEeeccCCceEEEECCCchhHHHHHHHHHHHhCCCcCCCCCCEEEEecCCEEEcCC-CEEeeCCcCCCCEEEE
Confidence 55555553 3799999999999999999999999998775 345666788889886 8999999999999875
No 108
>1fmb_A EIAV protease; hydrolase (acid proteinase), RNA-directed DNA polymerase, AS protease, endonuclease, polyprotein; HET: HYB; 1.80A {Equine infectious anemia virus} SCOP: b.50.1.1 PDB: 2fmb_A*
Probab=97.84 E-value=2.4e-05 Score=62.24 Aligned_cols=67 Identities=16% Similarity=0.101 Sum_probs=49.2
Q ss_pred eEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecc
Q psy15482 214 VMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTN 283 (302)
Q Consensus 214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~ 283 (302)
.+.++.++|+|++++||+||||..||++.+...+.+|...--+ ..+-.|+|...-.- -..+.+++++
T Consensus 7 ~RP~v~v~I~Gq~~e~LLDTGAD~TVl~~~~w~~i~lp~~~w~--p~~i~GiGG~i~v~-~~~i~i~i~g 73 (104)
T 1fmb_A 7 KRPTTIVLINDTPLNVLLDTGADTSVLTTAHYNRLKYRGRKYQ--GTGIGGVGGNVETF-STPVTIKKKG 73 (104)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEEEHHHHHHCSSCCCCEE--CCCEEETTEEECCE-EEEEEEEETT
T ss_pred CCCEEEEEECCEEEEEEeccCCCcEEEccccCcccCCCCccCC--ccEEEeCCCeEEee-EeeeEEEECC
Confidence 4578999999999999999999999999999988887754001 13455777542222 5667777654
No 109
>2kc2_A Talin-1, F1; FERM, adhesion, cell membrane, cell projection, cytoplasm, cytoskeleton, membrane, phosphoprotein, structural protein; NMR {Mus musculus}
Probab=97.71 E-value=4.7e-05 Score=62.67 Aligned_cols=70 Identities=13% Similarity=0.227 Sum_probs=58.6
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-------------------------------------CeEEE
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-------------------------------------EIAIE 45 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-------------------------------------~Q~Li 45 (302)
|.|+. ++|...++-|+.+.+|.+++..|..+.||+.. .|+|-
T Consensus 14 LkV~l-lDg~~ktl~VD~S~~V~~lv~~Ic~kigI~n~~ey~L~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~k~kL~ 92 (128)
T 2kc2_A 14 LKIRM-LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDEGTGTLRKDKTLLRDEKKMEKLKQKLH 92 (128)
T ss_dssp EEEEC-TTSCEEEEEEEECSSHHHHHHHHHHHHTCCCCSSEEEEEECCCCCCCCCSSCCSSSSSCSCCSCCSCSSCCSCC
T ss_pred EEEEc-CCCCEEEEEeCCCcCHHHHHHHHHHHhCCCCcccccccccccccccccCchhhccccccccchhHHHHHHHHhc
Confidence 67888 89999999999999999999999999999854 34442
Q ss_pred E--CCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 46 F--QGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 46 ~--~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
. .+..|++ ++||.++||.++++|.|.++
T Consensus 93 ~dd~~~WLD~-srtL~EQGI~e~~tllLRrK 122 (128)
T 2kc2_A 93 TDDELNWLDH-GRTLREQGVEEHETLLLRRK 122 (128)
T ss_dssp CSSSEEEECS-SSCHHHHTCCTTSEEEEEES
T ss_pred ccCCCCcccC-CCcHHHcCCCCCCEEEEEEE
Confidence 1 2356755 59999999999999999876
No 110
>2al3_A TUG long isoform; TUG UBL1 insulin, endocytosis/exocytosis complex; NMR {Mus musculus} SCOP: d.15.1.2
Probab=97.69 E-value=0.00016 Score=55.92 Aligned_cols=75 Identities=11% Similarity=0.086 Sum_probs=68.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecCC
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~~ 77 (302)
|.|+|-. .++..+++.|.|++++.++-+..-.++|+++++-.|.|++|+|+- +-.+.-.||-+|..|.|+.....
T Consensus 10 m~v~Vl~-~n~rr~~VKvtp~t~L~~VL~eaC~K~gl~~~~~~Lkh~~k~lDL-SlpfRlsgLpnnAkLELv~~s~s 84 (90)
T 2al3_A 10 SAVSVLA-PNGRRHTVKVTPSTVLLQVLEDTCRRQDFNPSEYDLKFQRTVLDL-SLQWRFANLPNNAKLEMVPVSRS 84 (90)
T ss_dssp CCEEEEC-TTSCEEEECCCTTSBHHHHHHHHHHHTTCCGGGCEEEETTEEESS-SCBHHHHCCCSSCEEEEECSSSC
T ss_pred cEEEEEc-CCCcEEEEEECCCCCHHHHHHHHHHHhCCChhhCeEEeCCEeccc-cceeEecCCCCCCEEEEEEccCC
Confidence 6788988 899999999999999999988888899999999999999999965 48999999999999999887643
No 111
>3uf8_A Ubiquitin-like protein SMT3, peptidyl-prolyl CIS- isomerase; ssgcid, seattle structural genomics center for in disease; HET: FK5; 1.50A {Burkholderia pseudomallei} PDB: 4ggq_C* 3vaw_A* 3uqa_A* 4g50_A* 4fn2_A* 3uqb_A* 4giv_A* 1euv_B 3v60_A 3v61_A 3v62_A*
Probab=97.65 E-value=0.00013 Score=64.54 Aligned_cols=73 Identities=10% Similarity=0.236 Sum_probs=64.3
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+...++..+.+.|..++.+.-|+...++..|+|+++++++|+|+.+.++ +|-.++.+.|+|+|.+.....
T Consensus 22 i~ikv~~~~~~v~~~i~~~~~l~kl~~~y~~~~g~~~~~~~f~fdG~~i~~~-~Tpk~L~~ed~d~I~~~~eq~ 94 (209)
T 3uf8_A 22 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI 94 (209)
T ss_dssp EEEEEECSSCEEEEEEETTSCTHHHHHHHHHHHTCCGGGCEEEETTEECCTT-CCTTTTTCCTTEEEEEECSCT
T ss_pred EEEEEEcCCCEEEEEEeeCCHHHHHHHHHHHhhCCChheEEEEECCEeccCC-CChHHhhhcccccchhhcccc
Confidence 4555433567778999999999999999999999999999999999999886 899999999999999887653
No 112
>3slz_A GAG-Pro-POL polyprotein; beta sheet and dimer, protease, peptide inhibitor, TL-3 PEPS virus, hydrolase-hydrolase inhibitor complex; HET: 3TL; 1.40A {Dg-75 murine leukemia virus} PDB: 3nr6_A* 3sm1_A* 3sm2_A* 4exh_A*
Probab=97.60 E-value=3.8e-05 Score=63.59 Aligned_cols=65 Identities=22% Similarity=0.192 Sum_probs=46.1
Q ss_pred eeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccceecccCcceeeeEEEEeeeeecccc
Q psy15482 213 VVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAELTNFN 285 (302)
Q Consensus 213 v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~ 285 (302)
-.+.|+.++|||++++|||||||..|+++..-+. .+. ......|+|.......-....++||+..
T Consensus 20 ~~RP~v~i~I~G~~~~~LlDTGAd~tVl~~~~~p-------~~~-~p~~I~GiGG~i~vr~~~~i~IeI~g~~ 84 (132)
T 3slz_A 20 PPEPRITLKVGGQPVTFLVDTGAQHSVLTQNPGP-------LSD-KSAWVQGATGGKRYRWTTDRKVHLATGK 84 (132)
T ss_dssp CCSSEEEEEETTEEEEEEECTTCSSCEECSCCCS-------EEE-EEEEEECSSCEEEEEEECCEEEEETTEE
T ss_pred cCCCEEEEEECCEEEEEEEeCCCCeEEEccccCC-------CCC-CceEEEccCCEEEEEEEeeeEEEECCee
Confidence 3467899999999999999999999999986554 111 1246678886544333334567777643
No 113
>3ix6_A TS, tsase, thymidylate synthase; niaid, ssgcid, seattle structural center for infectious DISE brucellosis, orchitis, epididymitis, mastitis; 2.20A {Brucella melitensis}
Probab=97.48 E-value=1.6e-05 Score=75.95 Aligned_cols=73 Identities=10% Similarity=0.236 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+...+|..+.+.|..++++..|+....+..|+++++++++|+|+.|.++ .|.++++++|||+|.+.....
T Consensus 22 I~LKV~~~g~~v~FkIk~~t~l~kLm~aY~~r~G~~~~~~rFlFdG~rI~~~-~TP~~L~MEDgD~Idv~~~Q~ 94 (360)
T 3ix6_A 22 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QTPEDLDMEDNDIIEAHREQI 94 (360)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEecCCcEEEEEEecCChHHHHHHHHHHHhCCCcceEEEEECCeECCCC-CChHHcCCCccchhhhhhccC
Confidence 4444433567778999999999999999999999999999999999999986 899999999999999987643
No 114
>2l76_A Nfatc2-interacting protein; ubiquitin-like domain, structural genomics, PSI-biology, Pro structure initiative; NMR {Homo sapiens}
Probab=97.34 E-value=0.0011 Score=51.81 Aligned_cols=71 Identities=14% Similarity=0.122 Sum_probs=62.0
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
|+|+....|..+-+.|..++-+.-|...-....|+++++.+++|+|..+.++ .|-+++|+.+||+|-+...
T Consensus 22 IniKV~~~g~ev~FkIK~tt~l~KL~~aYc~r~gv~~~sirFlfDG~rI~~~-~TP~~L~meD~DiID~~~~ 92 (95)
T 2l76_A 22 FPLKIRCRADLVRLPLRMSEPLQSVVDHMATHLGVSPSRILLLFGETELSPT-ATPRTLKLGVADIIDCVVL 92 (95)
T ss_dssp EEEEEECSSSEEEEEECSSSCTHHHHHHHHHHHTSCGGGEEEEETTEECCTT-SCHHHHTCCSSCEEEEEEC
T ss_pred EEEEEEcCCcEEEEEEecCChHHHHHHHHHhhcCCChhhEEEEECCcCCCCC-CCHhHcCCCCCCEEEEEEe
Confidence 3444333677788999999999999999999999999999999999999886 8999999999999988764
No 115
>4da1_A Protein phosphatase 1K, mitochondrial; metal-ION-assisted catalysis, dehydrogenase phosphatase, hydrolase; 2.38A {Homo sapiens} PDB: 3qht_A 1l2n_A
Probab=97.34 E-value=3e-05 Score=74.37 Aligned_cols=73 Identities=8% Similarity=0.227 Sum_probs=0.0
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
|+|+...++..+.+.|..++++..|+....++.|+++.+++++|+|+.|.++ .|.+++|+++||+|.+.....
T Consensus 31 i~lkv~~~~~~~~~~i~~~~~~~~l~~~y~~~~g~~~~~~~f~f~G~~i~~~-~Tp~~l~med~d~i~~~~~q~ 103 (389)
T 4da1_A 31 INLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQAD-QAPEDLDMEDNDIIEAHREQI 103 (389)
T ss_dssp --------------------------------------------------------------------------
T ss_pred EEEEEecCCcEEEEEECCCChHHHHHHHHHHHhCCCcceEEEEECCEEcCCC-CCHHHcCCCCCCEeeeeeccc
Confidence 5555534566778999999999999999999999999999999999999986 899999999999999887653
No 116
>2hs1_A HIV-1 protease; ultra-high resolution active site surface binding site, HYDR; HET: 017; 0.84A {Human immunodeficiency virus 1} PDB: 3nu4_A* 3tl9_A* 3tkw_A* 3tkg_A* 3ndu_A* 3ndt_A* 3k4v_A* 3a2o_A* 1fgc_C* 2a1e_A* 2aod_A* 2aoi_A* 2aoj_A* 2hb3_A* 2ien_A* 1sdt_A* 2z4o_A* 2zye_A* 2nmw_A* 3b7v_A* ...
Probab=97.21 E-value=0.0005 Score=54.10 Aligned_cols=60 Identities=23% Similarity=0.408 Sum_probs=40.5
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhcccc-ceecccCcceeeeEEEEeeeeecc
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWA-GIAKGVGVQKILGRIHMAIAELTN 283 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~-~~a~gvg~~~i~G~i~~~~~~ig~ 283 (302)
+-++.++|+|+.++|++||||..||++.. ++ -.|++ .+--|+|..--.-+-..+.++|.+
T Consensus 8 rP~vtvkI~Gq~~eaLLDTGAD~TVl~~~-----~~----p~~wkpk~igGiGG~i~v~qy~qi~iei~g 68 (99)
T 2hs1_A 8 RPLVTIKIGGQLKEALLDTGADDTIIEEM-----SL----PGRWKPKMIGGIGGFIKVRQYDQIIIEIAG 68 (99)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSEEESCC-----SS----CCCCEEEEEEETTEEEEEEEEEEEEEEETT
T ss_pred CCEEEEEECCEEEEEEeccCCCcEEEecc-----cC----CCCCCCcEEEeCCCcEeeeEeccEEEEEeC
Confidence 46889999999999999999999999952 22 23444 345577744223333455555543
No 117
>3qx1_A FAS-associated factor 1; UBX, protein binding, P97 binding; 1.60A {Homo sapiens} PDB: 3qwz_B* 3qc8_B 3qca_A 3qq8_B 3r3m_B 1h8c_A
Probab=97.14 E-value=0.0021 Score=48.50 Aligned_cols=71 Identities=18% Similarity=0.222 Sum_probs=59.7
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+|-|+. .+|..+.-....+.||.+|...|.. .+.+.....|+ |=.|.|. |.++||+++|+.++++|+|..+
T Consensus 9 ~i~iRl-pdG~r~~~~F~~~~tl~~v~~fv~~-~~~~~~~f~L~t~fPrk~l~~~d~~~TL~e~gL~p~a~L~ve~k 83 (84)
T 3qx1_A 9 KLRIRT-PSGEFLERRFLASNKLQIVFDFVAS-KGFPWDEYKLLSTFPRRDVTQLDPNKSLLEVKLFPQETLFLEAK 83 (84)
T ss_dssp EEEEEC-TTSCEEEEEEETTSBHHHHHHHHHH-TTCCTTTEEEECSSSCCBGGGSCTTSBTTTTTCCSEEEEEEEEC
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHH-cCCCCCCeEEEeCCCCCCCcCCCCCCCHHHCCCCCCCEEEEEec
Confidence 467788 7888888888899999999999998 67788888998 4478885 6568999999999999998654
No 118
>3ec0_A Protease; HIV-2, inhibitor, hydrolase; HET: GRL; 1.18A {Human immunodeficiency virus type 2} SCOP: b.50.1.1 PDB: 1hii_A* 1hsi_A 1hsh_A* 1idb_A* 1jld_A* 2mip_A 1ida_A* 3ebz_A* 3ecg_A* 3s45_A* 4upj_A* 1ivq_A* 1ivp_A 2hpf_A 3upj_A* 2hpe_A* 5upj_A* 6upj_A* 1sip_A 1tcw_A* ...
Probab=97.07 E-value=0.00036 Score=54.95 Aligned_cols=28 Identities=25% Similarity=0.542 Sum_probs=25.9
Q ss_pred eEEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482 214 VMLYINCKVNGYPVKAFIDSGAQTTIMS 241 (302)
Q Consensus 214 ~mlyi~~~ing~~v~a~vDsGaq~~i~s 241 (302)
.+-|+.++|||++++||+||||..||++
T Consensus 7 ~RP~vti~I~Gq~~e~LLDTGAD~TVl~ 34 (99)
T 3ec0_A 7 KRPVVTAYIEGQPVEVLLDTGADDSIVA 34 (99)
T ss_dssp SCCEEEEEETTEEEEEEECTTCSSCEES
T ss_pred cCCeEEEEECCEEEEEEEecCCCceEEc
Confidence 4568999999999999999999999996
No 119
>2hah_A Protease, retropepsin; retroviral, aspartyl, hydrolase-hydrolase complex; HET: 3TL; 1.70A {Feline immunodeficiency virus} PDB: 3ogp_A* 3ogq_A* 2fiv_A* 6fiv_A* 3fiv_A* 5fiv_A* 4fiv_A* 1fiv_A* 1b11_A*
Probab=96.97 E-value=0.0012 Score=53.27 Aligned_cols=27 Identities=37% Similarity=0.656 Sum_probs=25.3
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccCCH
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIMSL 242 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~s~ 242 (302)
.-++ ++|+|+.++||+||||..||++.
T Consensus 14 rP~v-ikI~Gq~~eaLLDTGAD~TVi~~ 40 (116)
T 2hah_A 14 PEIL-IFVNGYPIKFLLDTGADITVLNR 40 (116)
T ss_dssp CEEE-EEETTEEEEEEECTTCSSCEEEG
T ss_pred CCEE-EEECCEEEEEEecCCCCcEEEcc
Confidence 5688 99999999999999999999996
No 120
>2dzk_A UBX domain-containing protein 2; ubiquitin-like fold, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} PDB: 2kxj_A
Probab=96.88 E-value=0.0086 Score=47.50 Aligned_cols=74 Identities=18% Similarity=0.249 Sum_probs=62.7
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC--CCcccccccCCCCCCEEEEEEecC
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ--DNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~--D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
+|-|+. .+|..+.-....+.||.+|.+.|....+.+.....|+ |--|.|. |.++||+++|+.+..+|++.....
T Consensus 15 ~IqIRl-pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~f~L~t~fPrk~l~~~d~~~TL~elgL~psa~L~v~~~~~ 92 (109)
T 2dzk_A 15 RIQFRL-PDGSSFTNQFPSDAPLEEARQFAAQTVGNTYGNFSLATMFPRREFTREDYKRRLLDLELAPSASVVLLPAGR 92 (109)
T ss_dssp EEEEEC-SSSCEEEEEECTTSBHHHHHHHHHHHHTTSSCSCEEECSSSCCBCCTTTTTSBTGGGTCSSEEEEEEECCSS
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhccCCCCCceEEEcCCCCcCCcccccCCCHHHCCCCCceEEEEEECcC
Confidence 467888 7899888899999999999999999988887788887 5577786 556899999999999998877543
No 121
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=96.43 E-value=0.0019 Score=55.51 Aligned_cols=48 Identities=27% Similarity=0.511 Sum_probs=38.1
Q ss_pred CCCC-CCHH--HHHHHHhcCHHHHHHHHh----cChhHHHHhhcCChHHHHHHHHH
Q psy15482 109 NSLS-DDPA--TVRQLLLDNPKEIALLQQ----NNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 109 ~~~~-~npe--~iR~~~l~NP~~~~~L~~----~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
..+. ++|. .+|+++.+||+++..|.+ +||+|.+.|. .|++.|.++|.+
T Consensus 26 ~~L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~-qNqe~Fl~mLne 80 (171)
T 2qsf_X 26 GSIGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIM-ANPEVFVSMLLE 80 (171)
T ss_dssp --CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHH-HCHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHHhC
Confidence 3566 8887 689999999986666555 9999999996 589999998854
No 122
>2l32_A Small archaeal modifier protein 2; protein BIN; NMR {Haloferax volcanii}
Probab=96.43 E-value=0.0066 Score=44.98 Aligned_cols=62 Identities=21% Similarity=0.264 Sum_probs=49.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
|+|+|+. .......+++++..||.||-. +.|+|++.-.+..||+.+..+ . +.+||.|.++.-
T Consensus 1 M~v~Vkl-~g~~~~~~ev~~g~Tv~dLL~----~Lgl~~~~VvV~vNG~~v~~d-~------~l~GD~VeIv~~ 62 (74)
T 2l32_A 1 MNVTVEV-VGEETSEVAVDDDGTYADLVR----AVDLSPHEVTVLVDGRPVPED-Q------SVEVDRVKVLRL 62 (74)
T ss_dssp CEEEEEC-SSSSEEEEECSTTCSHHHHHH----TTCCCSSCCCEECCCCCCCTT-S------SSCCCCEEECSS
T ss_pred CEEEEEE-eCccceeEEcCCCCcHHHHHH----HcCCCcceEEEEECCEECCHH-H------CCCCCEEEEEEe
Confidence 9999998 555556789999999999754 578999988888999998665 2 346999988653
No 123
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=96.36 E-value=0.0056 Score=54.01 Aligned_cols=60 Identities=17% Similarity=0.306 Sum_probs=40.5
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccCCHHHHHHcCchhhhhcccc-ceecccCcceeeeEEEEeeeeecc
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWA-GIAKGVGVQKILGRIHMAIAELTN 283 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~-~~a~gvg~~~i~G~i~~~~~~ig~ 283 (302)
+..+.++|+|++++||+||||..||++. .+|. .||+ .+-.|+|..--.-+-....++|.+
T Consensus 8 RP~vtv~I~Gq~~e~LLDTGAD~TVl~~-----~~lp----g~w~pk~igGIGG~i~vrqy~~i~iei~g 68 (203)
T 3ka2_A 8 RPLVTIRIGGQLKEALLDTGADDTVIEE-----LNLP----GXWKPKLIGGIAGFIKVRQYDQIPVEIXG 68 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEECS-----CCCS----SCEEEEEEEETTEEEEEEEEEEEEEEETT
T ss_pred CCeEEEEECCEEEEEEEecCCCceEEec-----ccCC----CCCCceEEEEccCcEEEEEEcceeEEEcC
Confidence 4568899999999999999999999983 3333 2442 244577743333444556666543
No 124
>1wj4_A KIAA0794 protein; UBX domain, beta-grAsp fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: d.15.1.2
Probab=96.24 E-value=0.016 Score=47.09 Aligned_cols=72 Identities=18% Similarity=0.299 Sum_probs=60.8
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeec--CCCcccccccCCCCCCEEEEEEec
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLL--QDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L--~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
+|-|+. .+|..+.-....+.||.+|...|... +.+.....|+ |=.|.| .|.++||.++|+.+..+|+|...-
T Consensus 45 ~IqIRl-PdG~rl~~rF~~~~tl~~V~~fV~~~-~~~~~~F~L~t~fPrk~l~~~d~~~TL~e~gL~psa~Liv~~~d 120 (124)
T 1wj4_A 45 QLMLRY-PDGKREQITLPEQAKLLALVKHVQSK-GYPNERFELLTNFPRRKLSHLDYDITLQEAGLCPQETVFVQESG 120 (124)
T ss_dssp EEEEEC-TTSCEEEEEEETTSCHHHHHHHHHHH-HCCTTTEEEECSSSCCEETSSCSSSCTTTTTCCSSBCCEEEECC
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEecCCCCcCCccCCCCCCHHHCCCCCceEEEEEEcc
Confidence 467788 78888888899999999999999987 7888888888 558888 565689999999999899887653
No 125
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=96.14 E-value=0.0047 Score=45.78 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=33.1
Q ss_pred HHHHHHhcCHHHH----HHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482 117 TVRQLLLDNPKEI----ALLQQNNPRLADALLNGSPEDFERILR 156 (302)
Q Consensus 117 ~iR~~~l~NP~~~----~~L~~~NPeLa~al~~~d~e~f~~~lr 156 (302)
.+|+++.+||+++ ++|.++||+|++.|. .|++.|-++|.
T Consensus 17 qlR~~vqqNP~lL~~lLqqL~~~NPqL~q~I~-~n~e~Fl~ll~ 59 (72)
T 1pve_A 17 QMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN 59 (72)
T ss_dssp THHHHHTTCGGGHHHHHHHHHTTCHHHHHHHH-TTHHHHHHHHH
T ss_pred HHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence 6999999999765 456789999999996 68999999884
No 126
>1ryj_A Unknown; beta/alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI; NMR {Methanothermococcusthermolithotrophicus} SCOP: d.15.3.2
Probab=96.09 E-value=0.047 Score=39.54 Aligned_cols=61 Identities=21% Similarity=0.331 Sum_probs=47.5
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|+|.. ......++++...||.+|...+ ++++..-.+..||..+..+ . -+++||.|.+..
T Consensus 5 m~i~vNg--~~~~~~~~~~~~~tv~~Ll~~l----~~~~~~v~vavN~~~v~~~-~-----~L~~gD~V~ii~ 65 (70)
T 1ryj_A 5 MKFTVIT--DDGKKILESGAPRRIKDVLGEL----EIPIETVVVKKNGQIVIDE-E-----EIFDGDIIEVIR 65 (70)
T ss_dssp EEEEEEE--TTEEEEEEESSCCBHHHHHHHT----TCCTTTEEEEETTEECCTT-S-----BCCTTCEEEEEE
T ss_pred EEEEEeC--ccCceeEECCCCCcHHHHHHHh----CCCCCCEEEEECCEECCCc-c-----cCCCCCEEEEEe
Confidence 6788877 3334467888889999998876 5777777788999998654 2 589999999875
No 127
>2f4m_B UV excision repair protein RAD23 homolog B; glycoproteins, ubiquitin-dependent protein degradation, NUCL excision repair, peptide:N-glycanase; 1.85A {Mus musculus} SCOP: a.189.1.1 PDB: 2f4o_B*
Probab=95.94 E-value=0.0082 Score=43.06 Aligned_cols=45 Identities=27% Similarity=0.552 Sum_probs=36.3
Q ss_pred CCCCHH--HHHHHHhcCHHHH----HHHHhcChhHHHHhhcCChHHHHHHHH
Q psy15482 111 LSDDPA--TVRQLLLDNPKEI----ALLQQNNPRLADALLNGSPEDFERILR 156 (302)
Q Consensus 111 ~~~npe--~iR~~~l~NP~~~----~~L~~~NPeLa~al~~~d~e~f~~~lr 156 (302)
+.++|. .+|+++.+||+++ ++|.++||+|++.|. .|++.|-+++.
T Consensus 7 Lr~~Pqf~~lR~~vq~NP~~L~~lLqql~~~nP~l~~~I~-~n~e~Fl~ll~ 57 (61)
T 2f4m_B 7 LRNQPQFQQMRQIIQQNPSLLPALLQQIGRENPQLLQQIS-QHQEHFIQMLN 57 (61)
T ss_dssp GTTCHHHHHHHHHHHHCGGGHHHHHHHHHHHCHHHHHHHH-HSHHHHHHHHT
T ss_pred HHcChHHHHHHHHHHHCHHHHHHHHHHHHhHCHHHHHHHH-HCHHHHHHHHc
Confidence 455665 7899999999765 456789999999996 58999998873
No 128
>2cr5_A Reproduction 8; UBX domain, D0H8S2298E protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.15.1.2
Probab=95.83 E-value=0.051 Score=42.89 Aligned_cols=73 Identities=11% Similarity=0.148 Sum_probs=59.0
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE--ECCeecC-CCcccccccCCCCCCEEEEEEecC
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE--FQGVLLQ-DNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li--~~Gk~L~-D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
+|-|+. .+|..+.-....+.||.+|...|... +.......|+ |=.|.|. |.++||+++|+.+..+|+|..+-.
T Consensus 25 ~IqiRl-pdG~r~~rrF~~~~tl~~v~~fv~~~-~~~~~~f~L~t~fPrk~l~~d~~~TL~e~gL~p~a~L~Ve~~~~ 100 (109)
T 2cr5_A 25 TVALRC-PNGRVLRRRFFKSWNSQVLLDWMMKV-GYHKSLYRLSTSFPRRALEVEGGSSLEDIGITVDTVLNVEEKEQ 100 (109)
T ss_dssp EEEEEC-TTSCEEEEEEESSSBTHHHHHHHHHH-TCCTTTEEEECSSSCCBCCCCSSCBHHHHTCSSCEEEEEEECCC
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHhc-CCCCCCeEEEeCCCCcCCCCCCCCCHHHcCCCCCeEEEEEeCCC
Confidence 467788 78888888888899999999999965 5566677886 4577886 556899999999999998876543
No 129
>3sqf_A Protease; folded monomer, retropepsin, D-type retrovirus; 1.63A {Mason-pfizer monkey virus} SCOP: b.50.1.1 PDB: 1nso_A
Probab=95.83 E-value=0.0052 Score=49.48 Aligned_cols=27 Identities=22% Similarity=0.336 Sum_probs=24.4
Q ss_pred EEEEEEEcCeeEEEEEcCCCccccCCH
Q psy15482 216 LYINCKVNGYPVKAFIDSGAQTTIMSL 242 (302)
Q Consensus 216 lyi~~~ing~~v~a~vDsGaq~~i~s~ 242 (302)
-.+.++|+|++++||+||||..||++.
T Consensus 10 P~vti~I~Gq~~eaLLDTGADdTVi~~ 36 (114)
T 3sqf_A 10 PSLTLWLDDKMFTGLINTGADVTIIKL 36 (114)
T ss_dssp CEEEEEETTEEEEEEECTTCSSCEEEG
T ss_pred CeEEEEECCEEEEEEEccCCCceEEec
Confidence 457789999999999999999999984
No 130
>1s3s_G P47 protein; AAA ATPase, protein-protein complex, UBX domain, protein binding; HET: ADP; 2.90A {Rattus norvegicus} SCOP: d.15.1.2 PDB: 1i42_A 1jru_A
Probab=95.33 E-value=0.049 Score=44.29 Aligned_cols=68 Identities=12% Similarity=0.255 Sum_probs=55.1
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhh-hCCCCCCeEEE--ECCeecCCCcccccccCCCCCCEEEE
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ-SGYPAHEIAIE--FQGVLLQDNKKTLKTHGIQDGDLVLL 71 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e-~gIp~~~Q~Li--~~Gk~L~D~~~TL~~~gI~dgd~l~L 71 (302)
+|-|+. .+|..+.-....+.||.+|...|... .+.+.....|+ |-.|.|.|.++||+++|+.+. .|++
T Consensus 54 ~IqIRl-pdG~rl~~rF~~~~tl~~v~~fV~~~~~~~~~~~f~L~t~fPrk~l~d~~~TL~eagL~ps-avl~ 124 (127)
T 1s3s_G 54 NIQIRL-ADGGRLVQKFNHSHRISDIRLFIVDARPAMAATSFVLMTTFPNKELADENQTLKEANLLNA-VIVQ 124 (127)
T ss_dssp CEEEEE-TTTTEEEEECCSSCBHHHHHHHHHHHCSGGGTSCEEEEETTTTEECCSTTCBHHHHTCSSC-EEEE
T ss_pred EEEEEC-CCCCEEEEEeCCCCCHHHHHHHHHHhCcCCCCCCeEEecCCCCCCCCCCCCcHHHCCCcCc-eEEE
Confidence 477888 78988888999999999999999986 34556677887 558889876799999999974 4443
No 131
>4a3p_A Ubiquitin carboxyl-terminal hydrolase 15; 1.40A {Homo sapiens} PDB: 4a3o_A 3pv1_A 3ppa_A* 3t9l_A 3lmn_A
Probab=94.81 E-value=0.084 Score=46.55 Aligned_cols=64 Identities=11% Similarity=0.132 Sum_probs=53.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEE---C--CeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEF---Q--GVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~---~--Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
..+++.++...||.+|+..+...++||.+ +-||.. . ...|.|.++||++++|.+|+.|.|-.+.
T Consensus 140 ~~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RlW~~~~~~~~~~L~~~~~tl~~~~l~~~Q~illE~r~ 209 (217)
T 4a3p_A 140 NVVTRRFSKADTIDTIEKEIRKIFSIPDEKETRLWNKYMSNTFEPLNKPDSTIQDAGLYQGQVLVIEQKN 209 (217)
T ss_dssp EEEEEEECTTSBHHHHHHHHHHHTTCCTTSCEEEEEEEETTEEEECCCTTSBHHHHTCCTTCEEEEEECC
T ss_pred cceEEEEcccchHHHHHHHHHHHhCCCCCCceEEEEecCCCCeeecCCCCCCHHHhCCCCCCEEEEEEec
Confidence 34678899999999999999999999997 688862 2 2345665589999999999999998875
No 132
>3jyu_A Ubiquitin carboxyl-terminal hydrolase; domain in ubiquitin-specific peptidases (DUSP), proto- oncogene, ubiquitin-fold, UBL, protease, thioesterase; HET: 1PS; 2.37A {Mus musculus}
Probab=94.72 E-value=0.13 Score=45.78 Aligned_cols=64 Identities=13% Similarity=0.125 Sum_probs=54.0
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEE-C----CeecCCCcccccccCCCCCCEEEEEEecC
Q psy15482 13 CFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEF-Q----GVLLQDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~-~----Gk~L~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
.+++.++...||.+|+..+...++||.+ +-||.. + ...|.|.+.||++++|.+|+.|.+-.+..
T Consensus 153 ~~~~~~Sk~~ti~~l~~~~~~~~~i~~~~~~RLW~~~~~~~~~~L~~~~~tl~d~~L~~~Q~illE~r~~ 222 (231)
T 3jyu_A 153 VLSCHFSKADTIATIEKEMRKLFNIPAERETRLWNKYMSNTYEQLSKLDNTIQDAGLYQGQVLVIEPQNE 222 (231)
T ss_dssp EEEEEECTTCBHHHHHHHHHHHTTCCTTSCEEEEECSSSSSCEECCCTTSBTTTTTCCTTEEEEEEECCT
T ss_pred eEEEEecccCcHHHHHHHHHHHhCCCCCCeEEEEEecCCCCHhhhcCCCCCHHHhCCCCCCEEEEEEecC
Confidence 4567789999999999999999999997 689974 3 34566656899999999999999988753
No 133
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=94.37 E-value=0.15 Score=47.97 Aligned_cols=69 Identities=13% Similarity=0.195 Sum_probs=57.0
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhC----CCCCCeEEEE------CCeecCCCcccccccCCCCCCEEEEE
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG----YPAHEIAIEF------QGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~g----Ip~~~Q~Li~------~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
+.|.. .+.+.++..+|++||.|....|.++.. .+.++--|+. +|+-|.++ +||+.|++++|+.|...
T Consensus 6 ~~~~~--~~~~~~~~f~~~~~v~~~~~~i~e~~~~~~~~~~~~y~l~~~~~~~~~~~Wl~~~-~~l~~y~~~~~~~l~~~ 82 (371)
T 3ivf_A 6 LKISI--GNVVKTMQFEPSTMVYDACRMIRERIPEALAGPPNDFGLFLSDDDPKKGIWLEAG-KALDYYMLRNGDTMEYR 82 (371)
T ss_dssp EEEEE--TTEEEEEEECTTCBHHHHHHHHHTTCGGGGSSCGGGEEEEECCSSGGGCEECCTT-SBGGGGTCCTTCEEEEE
T ss_pred EEEEe--cceeEEEEECCCCCHHHHHHHHHHhcccccCCCHHHCeEeccCCCCCcCEeccCC-CCHHHhCCCCCceeecc
Confidence 34444 377889999999999999999987763 4678889988 67778886 89999999999999887
Q ss_pred Ee
Q psy15482 73 HL 74 (302)
Q Consensus 73 ~~ 74 (302)
.+
T Consensus 83 ~~ 84 (371)
T 3ivf_A 83 KK 84 (371)
T ss_dssp EC
T ss_pred Cc
Confidence 54
No 134
>3liy_A Protease; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.86A {Human t-lymphotropic virus 1} PDB: 2b7f_A* 3liq_A* 3lit_A* 3liv_A* 3lix_A* 3lin_A*
Probab=94.32 E-value=0.025 Score=45.49 Aligned_cols=43 Identities=19% Similarity=0.315 Sum_probs=32.5
Q ss_pred EEEEEEEEc-----CeeEEEEEcCCCccccCCHHHHHHcCchhhhhccccc----eecccC
Q psy15482 215 MLYINCKVN-----GYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAG----IAKGVG 266 (302)
Q Consensus 215 mlyi~~~in-----g~~v~a~vDsGaq~~i~s~~~a~~~gl~~~~d~~~~~----~a~gvg 266 (302)
+-.+.++|+ |+.+.||+||||..||+.. .+ .-.||+- +--|+|
T Consensus 10 RPlvtikI~~~~~~Gq~~eaLLDTGADdTVl~~-----~~----lPg~Wkp~~tkiiGGiG 61 (116)
T 3liy_A 10 RPVIKAQVDTQTSHPKTIEALLDTGADMTVIPI-----AL----FSSNTPLKNTSVLGAGG 61 (116)
T ss_dssp CCEEEEEEECSSSCCEEEEEEECTTBSSCEEEG-----GG----SCTTCCEEECCEEETTE
T ss_pred CCeEEEEEccccCCCeEeEEEeccCCCccEEec-----cc----CCCCCcccccceEeecc
Confidence 346788999 9999999999999999973 22 3345555 556677
No 135
>4e71_A Plexin-B2, MM1; transmembrane, signaling, RBD, structural genomics consortium, SGC, signaling protein; 2.26A {Homo sapiens}
Probab=94.28 E-value=0.23 Score=39.59 Aligned_cols=65 Identities=20% Similarity=0.306 Sum_probs=47.3
Q ss_pred CCeEEEEEeCCCccHHHHHHHHHhh--hCCC------CCCeEEEE----CCeecCCCc------------ccccccCCCC
Q psy15482 10 TNECFLLDVSEDLELENFKAFCEVQ--SGYP------AHEIAIEF----QGVLLQDNK------------KTLKTHGIQD 65 (302)
Q Consensus 10 ~g~~~~leV~~~~TV~dLK~~Ie~e--~gIp------~~~Q~Li~----~Gk~L~D~~------------~TL~~~gI~d 65 (302)
.+..+++.|-..+||.++|++|-.. .|.| +++..|-+ .|++|.|.+ .||++|+|.|
T Consensus 22 ~~~~i~vkVLdCDTItQvKeKiLd~vyk~~pyS~rP~~~~~dLEwr~g~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 101 (111)
T 4e71_A 22 GVDAIPVKVLNCDTISQVKEKIIDQVYRGQPCSCWPRPDSVVLEWRPGSTAQILSDLDLTSQREGRWKRVNTLMHYNVRD 101 (111)
T ss_dssp CCCCEEEEEETTCBHHHHHHHHHHHHTC---------CCSEEEEEC--CCCEECCSSCTTSCC---CCCCCBHHHHTCCT
T ss_pred CCCceeeeeeccCcHHHHHHHHHHHHHcCCccccCCCCCceeeEEecCCCCccccccCccceecCcceEecchhhcCCCC
Confidence 4566888888999999999988765 2444 45667776 356676521 3799999999
Q ss_pred CCEEEEEEe
Q psy15482 66 GDLVLLKHL 74 (302)
Q Consensus 66 gd~l~L~~~ 74 (302)
|.+|-|+.+
T Consensus 102 gatl~l~~~ 110 (111)
T 4e71_A 102 GATLILSKV 110 (111)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEeC
Confidence 999998764
No 136
>3ka2_A [L-Ala51;Gly51']HIV-1 protease; beta-barrel, hydrolase-hydrolase inhibitor complex; HET: YCM 2NC; 1.40A {Synthetic} PDB: 3fsm_A* 3gi0_A* 2o40_A* 3hzc_A* 3hlo_A* 3iaw_A* 3nxe_A* 3nxn_A* 4epj_A 4ep2_A 4ep3_A 4eq0_A 4eqj_A 1hvc_A* 1g6l_A 2whh_A* 1lv1_A* 3dox_A 3kt5_A 3kt2_A ...
Probab=94.06 E-value=0.035 Score=48.91 Aligned_cols=27 Identities=22% Similarity=0.475 Sum_probs=24.5
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccCC
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIMS 241 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~s 241 (302)
...+.++|+|+.+.||+||||..||++
T Consensus 112 rP~~~iki~Gq~~e~LlDTGAD~TVl~ 138 (203)
T 3ka2_A 112 RPLVTIRIGGQLKEALLDTGADDTVIE 138 (203)
T ss_dssp CCEEEEEETTEEEEEEECTTCSSCEEC
T ss_pred CCcEEEEECCEEEeeeecccCCceeee
Confidence 456789999999999999999999996
No 137
>2rsp_A RSV protease; hydrolase(aspartyl proteinase); 2.00A {Rous sarcoma virus} SCOP: b.50.1.1 PDB: 1mvp_A 1bai_A*
Probab=93.99 E-value=0.02 Score=46.68 Aligned_cols=29 Identities=28% Similarity=0.282 Sum_probs=25.1
Q ss_pred eEEEEEEE----------EcCeeEEEEEcCCCccccCCH
Q psy15482 214 VMLYINCK----------VNGYPVKAFIDSGAQTTIMSL 242 (302)
Q Consensus 214 ~mlyi~~~----------ing~~v~a~vDsGaq~~i~s~ 242 (302)
.+-.|.++ |+|+.+.||+||||..||++.
T Consensus 9 ~rP~v~v~~~~~~~~p~~i~gq~~eaLLDTGAD~TVl~~ 47 (124)
T 2rsp_A 9 DRPLVRVILTNTGSHPVKQRSVYITALLDSGADITIISE 47 (124)
T ss_dssp SCCEEEEEEEECCSSCCSCSEEEEEEEECTTCSSCEEET
T ss_pred hCCeEEEEeccCCCCcccCCCEEEEEEecCCCCcEEEec
Confidence 34567777 999999999999999999984
No 138
>2kl0_A Putative thiamin biosynthesis THis; structural genomics, PSI-2, protein structure initiative, N structural genomics consortium, NESG; NMR {Rhodopseudomonas palustris} PDB: 2lek_A
Probab=93.83 E-value=0.098 Score=38.40 Aligned_cols=62 Identities=13% Similarity=0.162 Sum_probs=46.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|+|+| +|+.+ ++ +..||.+|.+ +.|+++..-.+.+||..+.. ....+.-+++||.|.++.-.
T Consensus 1 M~I~v----NG~~~--e~-~~~Tl~~LL~----~l~~~~~~vAV~vNg~iVpr--~~~~~~~L~dGD~veIv~~V 62 (73)
T 2kl0_A 1 MLVTI----NGEQR--EV-QSASVAALMT----ELDCTGGHFAVALNYDVVPR--GKWDETPVTAGDEIEILTPR 62 (73)
T ss_dssp CCEEE----TTEEE--CC-CCSBHHHHHH----HTTCCSSSCEEEESSSEECH--HHHTTCBCCTTCEEEEECCC
T ss_pred CEEEE----CCEEE--Ec-CCCcHHHHHH----HcCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEccc
Confidence 55555 45644 45 6689999876 45788888889999999864 46777789999999987543
No 139
>1tyg_B YJBS; alpha beta barrel, protein-protein complex, THis, BIOS protein; 3.15A {Bacillus subtilis} SCOP: d.15.3.2
Probab=93.77 E-value=0.11 Score=39.60 Aligned_cols=57 Identities=11% Similarity=0.173 Sum_probs=43.4
Q ss_pred CCeEEEEEeCCC-ccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 10 TNECFLLDVSED-LELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 10 ~g~~~~leV~~~-~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+|+. +++++. .||.+|.+.+ ++++....+..||..+.. ....+.-+++||.|.++.-
T Consensus 26 NGe~--~el~~~~~Tv~dLL~~L----~~~~~~vaVavNg~iV~~--~~~~~~~L~dGD~Vei~~~ 83 (87)
T 1tyg_B 26 NGKD--VKWKKDTGTIQDLLASY----QLENKIVIVERNKEIIGK--ERYHEVELCDRDVIEIVHF 83 (87)
T ss_dssp TTEE--ECCSSSCCBHHHHHHHT----TCTTSCCEEEETTEEECG--GGTTTSBCCSSSEEEEEEE
T ss_pred CCEE--EECCCCCCcHHHHHHHh----CCCCCCEEEEECCEECCh--hhcCCcCCCCCCEEEEEcc
Confidence 5554 556776 8999998866 677777788899999864 3556667999999998753
No 140
>2k5p_A THis protein, thiamine-biosynthesis protein; NESG, GMR137, structural genomics, PSI-2, protein structure initiative; NMR {Geobacter metallireducens gs-15} PDB: 3cwi_A
Probab=93.28 E-value=0.13 Score=38.19 Aligned_cols=62 Identities=23% Similarity=0.371 Sum_probs=47.1
Q ss_pred CEEEEEeCCCCeEEEEEeC--CCccHHHHHHHHHhhhCCC-CCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNECFLLDVS--EDLELENFKAFCEVQSGYP-AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~--~~~TV~dLK~~Ie~e~gIp-~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
|+|+| +|+. ++++ ...||.+|.+.+ |++ +..-.+-+||..+.. ....+.-+++||.|.++.-
T Consensus 1 M~I~v----NGe~--~e~~~~~~~Tl~~LL~~l----~~~~~~~vAVavNg~iVpr--~~~~~~~L~dGD~IEIv~~ 65 (78)
T 2k5p_A 1 MNLTV----NGKP--STVDGAESLNVTELLSAL----KVAQAEYVTVELNGEVLER--EAFDATTVKDGDAVEFLYF 65 (78)
T ss_dssp CEEEE----TTEE--EECSSCSCEEHHHHHHHH----TCSCTTTCCEEETTEECCT--THHHHCEECSSBCEEECCC
T ss_pred CEEEE----CCEE--EEcCCCCCCcHHHHHHHc----CCCCCCcEEEEECCEECCh--HHcCcccCCCCCEEEEEee
Confidence 66665 4554 4566 779999987754 687 777788899999965 3677778999999998654
No 141
>2daj_A KIAA0977 protein, COBL-like 1; ubiquitin-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=93.00 E-value=0.2 Score=38.22 Aligned_cols=67 Identities=12% Similarity=0.177 Sum_probs=55.1
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE---CCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF---QGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~---~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
++.|.. ...+.+.+.|+|..++.+|--.|=.++.+.++.-.|.. .+.+|+-+ ++|.+|||++ |....
T Consensus 12 RLvVNy-~~tQKtVvRVSP~vpL~ellp~IC~Kcefdp~~~~Ll~d~~~~e~LdLs-kSLndlgirE---Lya~d 81 (91)
T 2daj_A 12 RVVINF-KKTQKTIVRVSPHASLQELAPIICSKCEFDPLHTLLLKDYQSQEPLDLT-KSLNDLGLRE---LYAMD 81 (91)
T ss_dssp EEEEEE-TTTEEEEEEECSSSCTTTHHHHHHHHTTCCTTSEEEESCSSCCCBCCTT-SCHHHHTCSE---EEEEE
T ss_pred EEEEee-cCcceeEEEeCCCCcHHHHHHHHhhcccCChhhEEEecCCCCCcccchh-cchhhhhhhh---hheec
Confidence 456666 66778889999999999999999999999999999985 45566554 8999999998 55443
No 142
>1f0z_A THis protein; ubiquitin fold, transport protein; NMR {Escherichia coli} SCOP: d.15.3.2 PDB: 1zud_2
Probab=92.93 E-value=0.11 Score=36.92 Aligned_cols=61 Identities=15% Similarity=0.269 Sum_probs=44.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|+| +|+. ++++...||.+|...+ +++...-.+..||..+.. ....+.-+++||.|.+..
T Consensus 1 m~i~v----Ng~~--~~~~~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~~gD~v~i~~ 61 (66)
T 1f0z_A 1 MQILF----NDQA--MQCAAGQTVHELLEQL----DQRQAGAALAINQQIVPR--EQWAQHIVQDGDQILLFQ 61 (66)
T ss_dssp CCEEE----SSCE--ECCCTTCCHHHHHHHH----TCCCSSEEEEETTEEECH--HHHTTCCCCTTEEECEEE
T ss_pred CEEEE----CCEE--EEcCCCCcHHHHHHHc----CCCCCCEEEEECCEECCc--hhcCCcCCCCCCEEEEEe
Confidence 55555 3443 5677889999998876 577777778899998853 234456799999998875
No 143
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=92.71 E-value=0.45 Score=34.43 Aligned_cols=65 Identities=20% Similarity=0.259 Sum_probs=44.4
Q ss_pred CEEEEEeC--CCCeEEEEEeCCCccHHHHHHHHHhhhCCCC--CCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQ--HTNECFLLDVSEDLELENFKAFCEVQSGYPA--HEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~--~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~--~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|+|+.- ... -++++ +..||.+|.+.+....++.. ..-.+..||+.+.+. +.-+++||.|.+..
T Consensus 1 M~v~V~~fa~l~~--~~~e~-~~~tv~~ll~~L~~~~~l~~~l~~~~vavN~~~v~~~-----~~~l~~gDeV~i~P 69 (74)
T 3rpf_C 1 MMVEVRFFGPIKE--ENFFI-KANDLKELRAILQEKEGLKEWLGVCAIALNDHLIDNL-----NTPLKDGDVISLLP 69 (74)
T ss_dssp CEEEEEECTTCCC--CCEEE-ECSSHHHHHHHHHTCTTTTTTTTTCEEEESSSEECCT-----TCCCCTTCEEEEEC
T ss_pred CEEEEEEEeecce--eEEee-CCCcHHHHHHHHHHCcCHHHHhhccEEEECCEEcCCC-----CcCCCCCCEEEEEC
Confidence 88999862 223 34667 66899999999986544332 345566788876432 34589999998864
No 144
>1oey_A P67-PHOX, neutrophil cytosol factor 2; immune system, PB1 heterodimer/complex, NADPH oxidase, PB1 D heterodimerization; 2.0A {Homo sapiens} SCOP: d.15.2.2
Probab=92.30 E-value=0.23 Score=37.63 Aligned_cols=44 Identities=5% Similarity=0.132 Sum_probs=38.6
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG 48 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G 48 (302)
+|.|.. ..++.+.|+++.+..+|.++|.++.++|++...|.|.-
T Consensus 7 ~VKV~~---~~tvairvp~~~~y~~L~~~l~~kL~l~~~~~~LsYk~ 50 (83)
T 1oey_A 7 TLKVHY---KYTVVMKTQPGLPYSQVRDMVSKKLELRLEHTKLSYRP 50 (83)
T ss_dssp EEEEES---SSEEEEEECTTCCHHHHHHHHHHHTTCCGGGCCEEECC
T ss_pred EEEEEE---EEEEEEECCCCCCHHHHHHHHHHHhCCCcceeEEEeeC
Confidence 455555 47899999999999999999999999999999999964
No 145
>2jys_A Protease/reverse transcriptase; retroviral protease, hydrolase; NMR {Simian foamy virus type 1}
Probab=91.38 E-value=0.095 Score=40.65 Aligned_cols=29 Identities=34% Similarity=0.447 Sum_probs=26.0
Q ss_pred EEEEEcCeeEEEEEcCCCccccCCHHHHH
Q psy15482 218 INCKVNGYPVKAFIDSGAQTTIMSLACAE 246 (302)
Q Consensus 218 i~~~ing~~v~a~vDsGaq~~i~s~~~a~ 246 (302)
+.++|-|..+++|-||||+.|-++....+
T Consensus 10 L~vEiKg~kLkg~WDsGA~ITCiP~~fL~ 38 (107)
T 2jys_A 10 LEAEIKGTKLKAHWDSGATITCVPEAFLE 38 (107)
T ss_dssp EEEEETTEEEEEEECTTCSSEEEEGGGTT
T ss_pred eeEEEeCcEEEEEecCCCeEEEcchHHhc
Confidence 68999999999999999999999887643
No 146
>2r2o_A Plexin-B1; effector domain, structural genomics, structural GEN consortium, SGC, glycoprotein, membrane, phosphorylation, R secreted, transmembrane; 2.00A {Homo sapiens} PDB: 2rex_A* 2jph_A
Probab=90.96 E-value=0.82 Score=37.72 Aligned_cols=66 Identities=24% Similarity=0.265 Sum_probs=47.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhh--CCCC------CCeEEEE----CCee-cCCCc------------ccccccCCCC
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQS--GYPA------HEIAIEF----QGVL-LQDNK------------KTLKTHGIQD 65 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~--gIp~------~~Q~Li~----~Gk~-L~D~~------------~TL~~~gI~d 65 (302)
.+.+++.|=..+||.++|++|-... |+|- ++..|-+ .|+. |.|.+ .||..|+|.|
T Consensus 40 ~~~i~VkVLdCDTItQvKeKiLDavYk~~PySqRP~~~d~dLEwr~g~~g~liL~D~D~tS~~~~~wkrLNTL~HY~V~D 119 (138)
T 2r2o_A 40 AQGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPD 119 (138)
T ss_dssp CCCEEEEEETTCBHHHHHHHHHHHHTTTSCGGGCCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBHHHHTCCT
T ss_pred CCceeEEEeccccHHHHHHHHHHHHHcCCccccCCCccceeEEEecCCcCceEeeccCCcccccCCceeecchhccCCCC
Confidence 3567899999999999999988763 4543 4556655 3443 65521 2899999999
Q ss_pred CCEEEEEEecC
Q psy15482 66 GDLVLLKHLGS 76 (302)
Q Consensus 66 gd~l~L~~~~~ 76 (302)
|.+|.|+.+..
T Consensus 120 ga~l~l~~~~~ 130 (138)
T 2r2o_A 120 GATVALVPCLT 130 (138)
T ss_dssp TCEEEEEEC--
T ss_pred CCEEEEEECCC
Confidence 99999988753
No 147
>1vjk_A Molybdopterin converting factor, subunit 1; structural genomics, PSI, protein structure INI southeast collaboratory for structural genomics; 1.51A {Pyrococcus furiosus} SCOP: d.15.3.1
Probab=90.47 E-value=1.1 Score=34.00 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=45.9
Q ss_pred CEEEEEeC------CCCeEEEEEeCCCccHHHHHHHHHhhhC-C----------CCCCeEEEECCeecCCCcccccccCC
Q psy15482 1 MKVTVSTQ------HTNECFLLDVSEDLELENFKAFCEVQSG-Y----------PAHEIAIEFQGVLLQDNKKTLKTHGI 63 (302)
Q Consensus 1 MqItV~~~------~~g~~~~leV~~~~TV~dLK~~Ie~e~g-I----------p~~~Q~Li~~Gk~L~D~~~TL~~~gI 63 (302)
|+|+|+.= ......++++++..||.+|.+.+..... + ......+..||+.... +.-+
T Consensus 10 ~~v~V~~FA~lre~~g~~~~~~e~~~~~Tv~~Ll~~L~~~~p~l~~~l~~~~g~~~~~v~v~VNg~~v~~------~~~L 83 (98)
T 1vjk_A 10 VKVKVKYFARFRQLAGVDEEEIELPEGARVRDLIEEIKKRHEKFKEEVFGEGYDEDADVNIAVNGRYVSW------DEEL 83 (98)
T ss_dssp EEEEEEECTHHHHHHSSSEEEEEECTTCBHHHHHHHHHHHCGGGGGSCBCSSSCTTSSBEEEETTBCCCT------TCBC
T ss_pred EEEEEEEhHHHHHHhCCCeEEEECCCCCCHHHHHHHHHhHChhHHHHhhccccccCCcEEEEECCEECCC------CCCC
Confidence 67777741 1224567888888999999999887631 1 1233556789987743 3468
Q ss_pred CCCCEEEEEE
Q psy15482 64 QDGDLVLLKH 73 (302)
Q Consensus 64 ~dgd~l~L~~ 73 (302)
++||.|.+..
T Consensus 84 ~dGDeV~i~p 93 (98)
T 1vjk_A 84 KDGDVVGVFP 93 (98)
T ss_dssp CTTCEEEEES
T ss_pred CCCCEEEEEC
Confidence 9999998863
No 148
>2juo_A GA-binding protein alpha chain; OST, ubiquitin, transcription factor, ensemble, DNA-binding, nucleus, transcription regulation; NMR {Mus musculus}
Probab=88.40 E-value=1.5 Score=33.25 Aligned_cols=62 Identities=18% Similarity=0.241 Sum_probs=52.8
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 13 CFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 13 ~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
.+.-.++=..++..||.+++...|++-+.-.++..+..|.++ ++|-+.+|+-.-+|-+..-.
T Consensus 4 vi~qhmDI~epL~~Lk~LLe~Rl~i~L~~y~f~LQd~~L~~~-k~LvdQcVqgeGlVQinvqi 65 (89)
T 2juo_A 4 CVSQAIDINEPIGNLKKLLEPRLQCSLDAHEICLQDIQLDPD-RSLFDQGVKTDGTVQLSVQV 65 (89)
T ss_dssp EEEEEEESSSBGGGHHHHSHHHHCSCCSSCEEEETTEECCTT-SBTTTSSCCCCSEEEEEEEE
T ss_pred hhhhhccccCcHHHHHHHHHHHhcCCcccCeEEeeccccCCC-ccHHHhhcccccEEEEEEEE
Confidence 344455666889999999999999999999999999999886 99999999988888876544
No 149
>2cu3_A Unknown function protein; thermus thermophilus HB8, structural genomics, riken structu genomics/proteomics initiative, RSGI, NPPSFA; 1.70A {Thermus thermophilus} SCOP: d.15.3.2 PDB: 2htm_E
Probab=87.42 E-value=1.3 Score=31.06 Aligned_cols=55 Identities=16% Similarity=0.176 Sum_probs=41.6
Q ss_pred CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
+|+.+ ++ +..||.+|...+ +++.....+..||..+.. ..-.+.-+++||.|.+..
T Consensus 5 Ng~~~--~~-~~~tv~~ll~~l----~~~~~~v~vavN~~~v~~--~~~~~~~L~dgD~v~i~~ 59 (64)
T 2cu3_A 5 NGEPR--PL-EGKTLKEVLEEM----GVELKGVAVLLNEEAFLG--LEVPDRPLRDGDVVEVVA 59 (64)
T ss_dssp TTEEE--CC-TTCCHHHHHHHH----TBCGGGEEEEETTEEEEG--GGCCCCCCCTTCEEEEEE
T ss_pred CCEEE--Ec-CCCcHHHHHHHc----CCCCCcEEEEECCEECCc--cccCCcCCCCCCEEEEEe
Confidence 56665 45 668999998876 566777778899998854 245556799999999875
No 150
>3h6n_A Plexin-D1; structural genomics consortium, SGC, membrane, transmembrane, receptor, alternative splicing, cell membrane, glycoprotein, polymorphism; 2.00A {Homo sapiens}
Probab=87.11 E-value=2.9 Score=33.97 Aligned_cols=66 Identities=17% Similarity=0.236 Sum_probs=48.5
Q ss_pred CCeEEEEEeCCCccHHHHHHHHHhh--hCCC------CCCeEEEE----CCee-cCCCc------------ccccccCCC
Q psy15482 10 TNECFLLDVSEDLELENFKAFCEVQ--SGYP------AHEIAIEF----QGVL-LQDNK------------KTLKTHGIQ 64 (302)
Q Consensus 10 ~g~~~~leV~~~~TV~dLK~~Ie~e--~gIp------~~~Q~Li~----~Gk~-L~D~~------------~TL~~~gI~ 64 (302)
++..+++.|-..+||.++|++|-.. .|+| +++..|-| .|+. |.|.+ .||.+|+|.
T Consensus 15 ~~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~~krLNTL~HY~V~ 94 (127)
T 3h6n_A 15 GMDSLSVRAMDTDTLTQVKEKILEAFCKNVPYSQWPRAEDVDLEWFASSTQSYILRDLDDTSVVEDGRKKLNTLAHYKIP 94 (127)
T ss_dssp CCCCEEEEEETTSBHHHHHHHHHHHHSTTSCGGGSCCGGGEEEEEECSSSCEEECCSSSTTSCEETTEECCCBTTTTTCC
T ss_pred CCCceeeeeeccCchhhhhHHHHHHHhccCCcccCCCCcccceEEecCCCCceEeecCCCcceecCceeEeccccccCCC
Confidence 4556888888999999999988765 2444 46777776 3443 55411 379999999
Q ss_pred CCCEEEEEEec
Q psy15482 65 DGDLVLLKHLG 75 (302)
Q Consensus 65 dgd~l~L~~~~ 75 (302)
||.+|.|+.+.
T Consensus 95 dgatv~l~~~~ 105 (127)
T 3h6n_A 95 EGASLAMSLID 105 (127)
T ss_dssp TTCEEEEEECC
T ss_pred CCCEEEEEEcc
Confidence 99999998664
No 151
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=85.89 E-value=4.4 Score=37.48 Aligned_cols=66 Identities=6% Similarity=0.058 Sum_probs=48.4
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECC-eecCCCcccccccCCCC-CCEEEEEEe
Q psy15482 9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG-VLLQDNKKTLKTHGIQD-GDLVLLKHL 74 (302)
Q Consensus 9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~G-k~L~D~~~TL~~~gI~d-gd~l~L~~~ 74 (302)
..-....+.+++..|+.++++.++.++++++++|.|+|.+ ....+....-+.|.-.. ..-|+|..+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~i~~~~q~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (396)
T 4eut_A 319 QQMTAHKIYIHSYNTATIFHELVYKQTKIISSNQELIYEGRRLVLEPGRLAQHFPKTTEENPIFVVSR 386 (396)
T ss_dssp TTTEEEEEEECTTCBHHHHHHHHHHHHCCCSTTEEEESSSSEECCCSSCBTTSSCCCCSSSCEEEEEC
T ss_pred ccceEEEEEcCchhHHHHHHHHHHHhcCCChhhhHHHhcCCCCCCCCCCccccCCCCCCCCCeEEEec
Confidence 4566778999999999999999999999999999999998 44445434555554332 233444443
No 152
>4e74_A Plexin-A4; RBD, structural genomics, structural genomics consor SGC, signaling protein; 1.58A {Homo sapiens} PDB: 3q3j_A*
Probab=85.87 E-value=2.2 Score=34.23 Aligned_cols=65 Identities=22% Similarity=0.279 Sum_probs=46.7
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhh--hCCCC------CCeEEEE-CC---e-ecCCCc------------ccccccCCCC
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQ--SGYPA------HEIAIEF-QG---V-LLQDNK------------KTLKTHGIQD 65 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e--~gIp~------~~Q~Li~-~G---k-~L~D~~------------~TL~~~gI~d 65 (302)
...+++.|-..+||.++|++|-.. .|.|. ++..|-+ .| + +|.|.+ .||.+|+|.|
T Consensus 26 ~~~i~VkVLdCDTItQvKeKiLd~vyk~~p~S~rP~~~~~dLEwr~g~~~~~iL~D~D~ts~~~~~wkrLNTL~HY~V~d 105 (117)
T 4e74_A 26 SPEVPVKILNCDTITQVKEKILDAIFKNVPCSHRPKAADMDLEWRQGSGARMILQDEDITTKIENDWKRLNTLAHYQVPD 105 (117)
T ss_dssp CCCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECTTSCEEEECSSSTTCCC---CCCCCBHHHHTCCT
T ss_pred CCceEeeeecCCchHHHHHHHHHHHhcCCCcccCCCCCceeEEEecCCCCceEeecCCCccEecCcceEeccccccCCCC
Confidence 345788888999999999988765 35553 4566765 33 3 254411 2699999999
Q ss_pred CCEEEEEEec
Q psy15482 66 GDLVLLKHLG 75 (302)
Q Consensus 66 gd~l~L~~~~ 75 (302)
|.+|-|+.+.
T Consensus 106 gatl~l~~~~ 115 (117)
T 4e74_A 106 GSVVALVSKQ 115 (117)
T ss_dssp TCEEEEEECC
T ss_pred CCEEEEEeCC
Confidence 9999998774
No 153
>1y8x_B Ubiquitin-activating enzyme E1C; ubiquitin-conjugating enzyme E2 M, ligase; 2.40A {Homo sapiens} SCOP: c.111.1.2 PDB: 3fn1_A
Probab=85.71 E-value=0.9 Score=35.31 Aligned_cols=62 Identities=16% Similarity=0.207 Sum_probs=43.0
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhCCCCC-----------CeEEEECC-eecCC-----CcccccccCCCCCCEEEEEE
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSGYPAH-----------EIAIEFQG-VLLQD-----NKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-----------~Q~Li~~G-k~L~D-----~~~TL~~~gI~dgd~l~L~~ 73 (302)
....++|++++|+.+|-..+.....+-.. .-.||..+ ..|.. =+++|.++|+.+|+.|++.-
T Consensus 5 ~~~~l~v~~~~TL~~lid~L~~~p~~qlk~PSltt~~~~~~k~LYmq~pp~Lee~Tr~NL~k~l~eLgl~~g~ei~VtD 83 (98)
T 1y8x_B 5 LPQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYMQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 83 (98)
T ss_dssp CCCCEECCTTCBHHHHHHHHHHCTTCCCSSCEEEEEETTEEEEEECSSCHHHHHHHHHHHHSBSGGGTCCTTCEEEEEC
T ss_pred CcEEEEECCchhHHHHHHHHHhChHhhccCCeeeeecCCCCCeEEEeCcHHHHHHhHhhhhCCHHHhCCCCCCEEEEEC
Confidence 35578999999999999999885332222 34445443 12321 23679999999999999853
No 154
>2kvr_A Ubiquitin carboxyl-terminal hydrolase 7; USP7, ubiquitin-like domain, UBL, ubiquitin specific protease, HOST-virus interaction, nucleus, protease; NMR {Homo sapiens}
Probab=85.42 E-value=0.84 Score=37.11 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=30.7
Q ss_pred EEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF 46 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~ 46 (302)
.++-|-.++|+.+|+..|+.++|+|++.|||..
T Consensus 58 ~~~rv~k~~~~~~~~~~va~~lg~~~~~~RlW~ 90 (130)
T 2kvr_A 58 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 90 (130)
T ss_dssp EEEECCTTSBHHHHHHHHHHHHCCCGGGCEEEE
T ss_pred ceEEEeccCcHHHHHHHHHHHhCCCcccEEEEE
Confidence 467889999999999999999999999999985
No 155
>1wgk_A Riken cDNA 2900073H19 protein; THis domain, ubiqutin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.15.3.3 PDB: 1xo3_A
Probab=85.31 E-value=4.9 Score=31.73 Aligned_cols=71 Identities=13% Similarity=0.079 Sum_probs=42.9
Q ss_pred CEEEEEeC-----CCC--eEEEEEeCC---CccHHHHHHHHHhhh-CCC---------C-CCeEEEECCeecCCCcccc-
Q psy15482 1 MKVTVSTQ-----HTN--ECFLLDVSE---DLELENFKAFCEVQS-GYP---------A-HEIAIEFQGVLLQDNKKTL- 58 (302)
Q Consensus 1 MqItV~~~-----~~g--~~~~leV~~---~~TV~dLK~~Ie~e~-gIp---------~-~~Q~Li~~Gk~L~D~~~TL- 58 (302)
|+|+|+.. ..| +.+.++++. ..||.+|...+...+ +.. . ....++.||+... -|
T Consensus 12 M~v~V~~~~~Lr~~~g~~~~~~vel~~~~~~~TV~~Ll~~L~~~~~~~~~~lf~~~g~lr~~i~VlVN~~di~----~l~ 87 (114)
T 1wgk_A 12 LCVKVEFGGGAELLFDGVKKHQVALPGQEEPWDIRNLLVWIKKNLLKERPELFIQGDSVRPGILVLINDADWE----LLG 87 (114)
T ss_dssp EEEEEEECTTTGGGTTTCSEEEEEECCCSSCCBHHHHHHHHTTTTCCSCHHHHCCSSSCCSSEEEEESSSBHH----HHC
T ss_pred cEEEEEEchHHHHHhCCceEEEEEeCCCCCCCCHHHHHHHHHHHccchhHhhCccCCcccCCeEEEECCeeee----ccC
Confidence 67888853 123 366788884 369999999998775 110 0 1122334554221 11
Q ss_pred -cccCCCCCCEEEEEEec
Q psy15482 59 -KTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 59 -~~~gI~dgd~l~L~~~~ 75 (302)
.++-+++||.|.+....
T Consensus 88 gldt~L~dGDeV~iip~v 105 (114)
T 1wgk_A 88 ELDYQLQDQDSILFISTL 105 (114)
T ss_dssp TTTCBCCSSEEEEEEECS
T ss_pred CcCcCCCCCCEEEEeCCC
Confidence 24679999999886643
No 156
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=84.62 E-value=0.91 Score=46.54 Aligned_cols=66 Identities=21% Similarity=0.310 Sum_probs=48.6
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccC---C------CCCCEEEEEEe
Q psy15482 9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG---I------QDGDLVLLKHL 74 (302)
Q Consensus 9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~g---I------~dgd~l~L~~~ 74 (302)
......++.++++.|+.+|+..|+.++|||++.|.|++.+..-.+.....+.|- . .|.++|+|..+
T Consensus 319 ~~~~~~~~~i~~~~tl~~l~~~i~~~T~i~~~~q~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (676)
T 3qa8_A 319 VSGRVHTYPVTENENLQNLKSWLQQDTGIPEEEQELLQASGLALNSAQPLTQYVIDCTVIDGRQGEGDLIFLFDN 393 (676)
T ss_dssp SSSCCCEEECCTTCCHHHHHHHHHTTSCCCSTTCEEESSSSCCCCTTSCGGGSCCCSCC-------CCCEEECSS
T ss_pred cccccceeecCCCccHHHHHHHHHHHhCCCHHHHHHHhccCCCCCCCcchhhheeccccccccCCCCceEEEEec
Confidence 456667899999999999999999999999999999986544334335666542 2 35666777655
No 157
>2qjl_A URM1, ubiquitin-related modifier 1; ubiquitin-like protein, signaling protein; 1.44A {Saccharomyces cerevisiae} PDB: 2pko_A 2ax5_A
Probab=84.24 E-value=5 Score=30.43 Aligned_cols=69 Identities=10% Similarity=0.097 Sum_probs=42.2
Q ss_pred CEEEEEeC------C-CCeEEEEEeC--CCccHHHHHHHHHhhhCCC-CCC------------eEEEECCeecCCCcccc
Q psy15482 1 MKVTVSTQ------H-TNECFLLDVS--EDLELENFKAFCEVQSGYP-AHE------------IAIEFQGVLLQDNKKTL 58 (302)
Q Consensus 1 MqItV~~~------~-~g~~~~leV~--~~~TV~dLK~~Ie~e~gIp-~~~------------Q~Li~~Gk~L~D~~~TL 58 (302)
|+|+|+.- . +....+++++ +..||.+|...+.....-. ..- ..+..||+... .+
T Consensus 2 M~i~V~~fa~lre~~~g~~~~~~~l~~~~~~Tv~~L~~~L~~~~~~~~~~l~~~~~~~~lr~~~~v~VN~~~~~----~~ 77 (99)
T 2qjl_A 2 VNVKVEFLGGLDAIFGKQRVHKIKMDKEDPVTVGDLIDHIVSTMINNPNDVSIFIEDDSIRPGIITLINDTDWE----LE 77 (99)
T ss_dssp EEEEEEEETTGGGGTTTCCEEEEEECSCSCCBHHHHHHHHHHHTCSSGGGHHHHEETTEECTTEEEEETTEEGG----GG
T ss_pred cEEEEEEchHHHHHhCCCcEEEEecCCCCCCcHHHHHHHHHHHCchhhHHHhhhccCCccccCeEEEECCEEcc----cc
Confidence 67888741 2 2355678887 6789999999998775211 110 12334555321 11
Q ss_pred --cccCCCCCCEEEEEE
Q psy15482 59 --KTHGIQDGDLVLLKH 73 (302)
Q Consensus 59 --~~~gI~dgd~l~L~~ 73 (302)
.++-+++||.|.+..
T Consensus 78 ~~~d~~L~dgDeVa~~P 94 (99)
T 2qjl_A 78 GEKDYILEDGDIISFTS 94 (99)
T ss_dssp TGGGCBCCTTCEEEEEE
T ss_pred CCCCcCcCCCCEEEEEC
Confidence 245699999998864
No 158
>3dwg_C 9.5 kDa culture filtrate antigen CFP10A; sulfur carrier protein complex, beta-grAsp fold, amino-acid biosynthesis; HET: PLP; 1.53A {Mycobacterium tuberculosis} PDB: 3dwm_A
Probab=82.35 E-value=4.2 Score=30.28 Aligned_cols=70 Identities=23% Similarity=0.140 Sum_probs=43.3
Q ss_pred CEEEEEeC-----CCCeEEEEEeCCCccHHHHHHHHHhhhC-C-----C-------CCCeEEEECCeecCCCcccccccC
Q psy15482 1 MKVTVSTQ-----HTNECFLLDVSEDLELENFKAFCEVQSG-Y-----P-------AHEIAIEFQGVLLQDNKKTLKTHG 62 (302)
Q Consensus 1 MqItV~~~-----~~g~~~~leV~~~~TV~dLK~~Ie~e~g-I-----p-------~~~Q~Li~~Gk~L~D~~~TL~~~g 62 (302)
|+|+|+.- ..|....+++ +..||.+|...+..... + . .....+..||+..... .-+ +.-
T Consensus 1 M~v~V~~fa~lr~~~g~~~~~~~-~~~Tv~~ll~~L~~~~p~l~~~l~~~~~~g~~~~~~~v~VN~~~v~~~-~~~-~~~ 77 (93)
T 3dwg_C 1 MNVTVSIPTILRPHTGGQKSVSA-SGDTLGAVISDLEANYSGISERLMDPSSPGKLHRFVNIYVNDEDVRFS-GGL-ATA 77 (93)
T ss_dssp -CEEEECCGGGGGGTTTCSEEEE-CCSBHHHHHHHHHHHSTTHHHHHBCSSSTTSBCTTEEEEETTEEGGGT-TGG-GCB
T ss_pred CEEEEEEeHHHHHHhCCCeEEec-CCCCHHHHHHHHHHHChhHHHHHhccccCCcccCCEEEEECCEEccCc-CCC-CcC
Confidence 78888841 1232234675 45799999999987642 0 1 0124566788877531 122 345
Q ss_pred CCCCCEEEEEE
Q psy15482 63 IQDGDLVLLKH 73 (302)
Q Consensus 63 I~dgd~l~L~~ 73 (302)
+++||.|.+..
T Consensus 78 L~~gDeV~i~P 88 (93)
T 3dwg_C 78 IADGDSVTILP 88 (93)
T ss_dssp CCTTCEEEEEE
T ss_pred CCCCCEEEEEC
Confidence 89999998865
No 159
>3kuz_A Plexin-C1; structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=81.77 E-value=5.9 Score=32.06 Aligned_cols=63 Identities=19% Similarity=0.151 Sum_probs=43.4
Q ss_pred eEEEEEeCCCccHHHHHHHHHhh----hCCCC----CCeEEEE-C---CeecCCC-------------cccccccCCCCC
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQ----SGYPA----HEIAIEF-Q---GVLLQDN-------------KKTLKTHGIQDG 66 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e----~gIp~----~~Q~Li~-~---Gk~L~D~-------------~~TL~~~gI~dg 66 (302)
+.+++.|-..+||.++|++|-.. .|+|. ++..|-| . |++|.|. -.||+.|+|.||
T Consensus 39 ~~v~VkVLdCDTItQVKEKILdavYk~k~~pys~r~~d~dLEwr~g~~~~~L~D~D~tS~~~e~~wkrLNTL~HY~V~Dg 118 (126)
T 3kuz_A 39 RNISVNVLDCDTIGQAKEKIFQAFLSKNGSPYGLQLNEIGLELQMGTRQKELLDIDSSSVILEDGITKLNTIGHYEISNG 118 (126)
T ss_dssp CEEEEEEETTCBHHHHHHHHHHHHHHHHSSCCSSCGGGEEEEEEETTEEEEECSSCTTCCBCTTSCBCCCBTGGGTCCTT
T ss_pred CceEeeeecCCcHHHHHHHHHHHHhccCCCcCCCCccccceEEecCCCcceeeccCCcceEecCCeeEeccccccCCCCC
Confidence 56788888999999999977543 37765 3445544 1 2233221 026889999999
Q ss_pred CEEEEEEe
Q psy15482 67 DLVLLKHL 74 (302)
Q Consensus 67 d~l~L~~~ 74 (302)
.+|-|+.+
T Consensus 119 atlal~kk 126 (126)
T 3kuz_A 119 STIKVFKK 126 (126)
T ss_dssp CEEEEEEC
T ss_pred CEEEEeeC
Confidence 99988764
No 160
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=80.38 E-value=3.1 Score=32.13 Aligned_cols=67 Identities=9% Similarity=0.091 Sum_probs=47.8
Q ss_pred CEEEEEeCCC--CeEEEEEeCCCccHHHHHHHHHhh---hCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHT--NECFLLDVSEDLELENFKAFCEVQ---SGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~--g~~~~leV~~~~TV~dLK~~Ie~e---~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
|+|.|..... ...+.+++++.+||.++-+..... ..|..+...+-.||+.... +.-+++||.|.+.+
T Consensus 13 ~~v~v~ya~p~rq~~~~~~v~~g~TV~daI~~~gi~~~~peIdl~~~~V~Vng~~v~~------d~~L~dGDRVEIyr 84 (97)
T 2hj1_A 13 INIEIAYAFPERYYLKSFQVDEGITVQTAITQSGILSQFPEIDLSTNKIGIFSRPIKL------TDVLKEGDRIEIYR 84 (97)
T ss_dssp EEEEEEEEETTEEEEEEEEEETTCBHHHHHHHHTHHHHCTTCCTTTSEEEEEECSCCT------TCBCCTTCEEEECC
T ss_pred EEEEEEEeCCCCCEEEEEEcCCCCcHHHHHHHcCCCccCCcccccccEEEEcCEECCC------CccCCCCCEEEEEe
Confidence 3556654333 445678999999999998876542 3456666788889998863 23589999999864
No 161
>3onh_A Ubiquitin-activating enzyme E1-like; ligase, SUMO conjugation, UBC9; 1.60A {Saccharomyces cerevisiae} PDB: 3ong_A
Probab=79.82 E-value=4.2 Score=33.01 Aligned_cols=59 Identities=22% Similarity=0.425 Sum_probs=40.6
Q ss_pred EEEeCC----CccHHHHHHHHHhhhCCCCCCeEEEE--CCeecC------CCcccccccCCCCCCEEEEEEe
Q psy15482 15 LLDVSE----DLELENFKAFCEVQSGYPAHEIAIEF--QGVLLQ------DNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 15 ~leV~~----~~TV~dLK~~Ie~e~gIp~~~Q~Li~--~Gk~L~------D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
.+.|++ ..|+.+|-..+..+.|.+. +..++- +.+.|- +-.+||+++||++|++|.+.--
T Consensus 9 vl~v~~~dl~~~TL~dLV~~l~~~~gy~~-eiSV~~~~~~rLLyD~DfDDnl~k~L~dLgv~~gsfLtv~DE 79 (127)
T 3onh_A 9 VIKLSSDCLNKMKLSDFVVLIREKYSYPQ-DISLLDASNQRLLFDYDFEDLNDRTLSEINLGNGSIILFSDE 79 (127)
T ss_dssp EEEECHHHHHHCBHHHHHHHHHHHHTCCS-SEEEEETTTTEEEEETTBCTTTTSBTTTTTCCTTCEEEEEES
T ss_pred EEEeCcccccccCHHHHHHHHHHhcCCCC-cEEEEecCCCCeEeCCCccccccCcHHHcCcCCCcEEEEEcc
Confidence 355654 4699998888888888763 343332 234442 2237999999999999998753
No 162
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=78.74 E-value=8.6 Score=27.89 Aligned_cols=29 Identities=21% Similarity=0.485 Sum_probs=21.6
Q ss_pred CCHHHHHHHHhcCHHHHHHHHhcChhHHHHh
Q psy15482 113 DDPATVRQLLLDNPKEIALLQQNNPRLADAL 143 (302)
Q Consensus 113 ~npe~iR~~~l~NP~~~~~L~~~NPeLa~al 143 (302)
..|+.....++++|+++..| +||++..++
T Consensus 7 e~~ee~~~~~m~dPEi~~im--~DP~~~~~l 35 (71)
T 2llw_A 7 ETPEETYQRAMKDPEVAAIM--QDPVMQSIL 35 (71)
T ss_dssp SCHHHHHHHHHHSHHHHHHH--TCTHHHHHH
T ss_pred CCcHHHHHHHhcCHHHHHHh--CCHHHHHHH
Confidence 35666666778888888777 788888777
No 163
>3po0_A Small archaeal modifier protein 1; ubiquitin-like protein, protein binding; 1.55A {Haloferax volcanii} PDB: 2l83_A
Probab=78.24 E-value=9.1 Score=28.03 Aligned_cols=56 Identities=14% Similarity=0.016 Sum_probs=40.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhC-C-----C-----CCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSG-Y-----P-----AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~g-I-----p-----~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
....+++++..||.+|.+.+..... + . .....+..||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~~~~~~~Tv~~ll~~L~~~~p~~~~~~l~~~g~l~~~~~v~VN~~~v~~------~~~l~~gDeV~i~P 84 (89)
T 3po0_A 18 RTVRVDVDGDATVGDALDALVGAHPALESRVFGDDGELYDHINVLRNGEAAAL------GEATAAGDELALFP 84 (89)
T ss_dssp SEEEEECCTTCBHHHHHHHHHHHCGGGHHHHBCTTSCBCTTSEEEETTEECCT------TSBCCTTCEEEEEC
T ss_pred CeEEEECCCCCcHHHHHHHHHHHCcHHHHHHhccCCcccccEEEEECCEECCC------CcccCCCCEEEEEC
Confidence 5567899888999999999987642 1 0 012466679988754 23589999998864
No 164
>3ig3_A Plxna3 protein; plexin intracellular GAP RBD inactive, membrane, transmembra membrane protein, signaling protein; 1.99A {Mus musculus} PDB: 3ryt_A*
Probab=76.42 E-value=11 Score=38.08 Aligned_cols=66 Identities=23% Similarity=0.260 Sum_probs=46.5
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhh--CCC------CCCeEEEE----CCe-ecCCCc------------ccccccCCCC
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQS--GYP------AHEIAIEF----QGV-LLQDNK------------KTLKTHGIQD 65 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~--gIp------~~~Q~Li~----~Gk-~L~D~~------------~TL~~~gI~d 65 (302)
...+++.|-..+||.++|++|-... |+| +++..|-+ .|+ +|.|.+ .||.+|+|.|
T Consensus 246 ~~~i~vkVLdCDTItQVKeKiLdavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~D 325 (627)
T 3ig3_A 246 SAQVPVKVLNCDSITQAKDKLLDTVYKGIPYSQRPKAEDMDLEWRQGRMARIILQDEDITTKIECDWKRVNSLAHYQVTD 325 (627)
T ss_dssp -CEEEEEEETTCBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEESCSSCEEEECSSSTTCCEETTEEECCBTTTTTCCT
T ss_pred CCceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCccceeEeeCCCCceeeccCCccccccCceeEecchhhcCCCC
Confidence 4567888989999999999887652 444 45667765 233 344411 3799999999
Q ss_pred CCEEEEEEecC
Q psy15482 66 GDLVLLKHLGS 76 (302)
Q Consensus 66 gd~l~L~~~~~ 76 (302)
|.+|.|+.+..
T Consensus 326 ga~v~L~p~~~ 336 (627)
T 3ig3_A 326 GSLVALVPKQV 336 (627)
T ss_dssp TCEEEEEEC--
T ss_pred CceEEEEeccc
Confidence 99999988763
No 165
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=76.33 E-value=2.4 Score=29.78 Aligned_cols=12 Identities=17% Similarity=0.382 Sum_probs=4.8
Q ss_pred HHHhcCHHHHHH
Q psy15482 120 QLLLDNPKEIAL 131 (302)
Q Consensus 120 ~~~l~NP~~~~~ 131 (302)
+-+.+||..++.
T Consensus 6 ~kl~~dPe~~~~ 17 (62)
T 2lnm_A 6 SKIMENPDVAMA 17 (62)
T ss_dssp HHHTTSHHHHHH
T ss_pred HHHHcChHHHHH
Confidence 333444443333
No 166
>2kmm_A Guanosine-3',5'-BIS(diphosphate) 3'- pyrophosphohydrolase; methods development, TGS domain, predominantly beta-sheet structure; NMR {Porphyromonas gingivalis}
Probab=76.30 E-value=5.2 Score=28.03 Aligned_cols=64 Identities=19% Similarity=0.117 Sum_probs=42.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
|.|+|+. .+|+. .+++...|+.+|-..+.... +........||+...- ++-+++||.|.++...
T Consensus 1 m~i~i~~-p~g~~--~~~~~g~T~~dla~~i~~~l--~~~~vaa~vNg~lvdl------~~~L~~~~~Veivt~~ 64 (73)
T 2kmm_A 1 MEVMVFT-PKGEI--KRLPQGATALDFAYSLHSDL--GDHCIGAKVNHKLVPL------SYVLNSGDQVEVLSSK 64 (73)
T ss_dssp CCEEEEC-TTCCE--EEECTTCBHHHHHHHHCSHH--HHTEEEEEETTEECCT------TCBCCSSSBEEEEECC
T ss_pred CeEEEEc-CCCCE--EEcCCCCcHHHHHHHHhhcc--ccceEEEEECCEEeCC------CcCcCCCCEEEEEECC
Confidence 8899988 56765 56778899999988774332 1122233468886533 2456788998887543
No 167
>3hm6_X Plexin-B1; structural genomics consortium, SGC, membrane, transmembrane receptor, cell membrane, glycoprotein, phosphoprotein; 2.40A {Homo sapiens} PDB: 3sua_D* 3su8_X*
Probab=76.06 E-value=9.5 Score=38.68 Aligned_cols=65 Identities=23% Similarity=0.276 Sum_probs=46.6
Q ss_pred eEEEEEeCCCccHHHHHHHHHhh--hCCCC------CCeEEEE----CCe-ecCCCc------------ccccccCCCCC
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQ--SGYPA------HEIAIEF----QGV-LLQDNK------------KTLKTHGIQDG 66 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e--~gIp~------~~Q~Li~----~Gk-~L~D~~------------~TL~~~gI~dg 66 (302)
..+++.|-..+||.++|++|-.. .|+|. ++..|-+ .|+ +|.|.+ .||.+|+|.||
T Consensus 274 ~~i~VkVLdCDTItQVKeKiLDavYk~~pyS~rP~~~~~dLEwr~g~~g~~iL~D~D~ts~~~~~wkrLNTL~HY~V~dg 353 (644)
T 3hm6_X 274 QGVPVKVLDCDTISQAKEKMLDQLYKGVPLTQRPDPRTLDVEWRSGVAGHLILSDEDVTSEVQGLWRRLNTLQHYKVPDG 353 (644)
T ss_dssp CCEEEEEETTSBHHHHHHHHHHHHTTTSCGGGSCCGGGEEEEEECSSSCEEEECSSSTTCCEETTEEECCBTTTTTCCTT
T ss_pred CceeeEeeccCcHHHHHHHHHHHHHcCCCcccCCCCCCcceEEeeCCCCceeecccCccceecCcceeecchhhcCCCCC
Confidence 45788888999999999988754 35553 5556665 233 355522 37999999999
Q ss_pred CEEEEEEecC
Q psy15482 67 DLVLLKHLGS 76 (302)
Q Consensus 67 d~l~L~~~~~ 76 (302)
.+|.|+.+..
T Consensus 354 a~v~L~p~~~ 363 (644)
T 3hm6_X 354 ATVALVPCLT 363 (644)
T ss_dssp CEEEEEEC--
T ss_pred cEEEEEeccc
Confidence 9999987653
No 168
>2kmc_A Fermitin family homolog 1; kindlin, cytoskeleton, integrin, N-terminal, talin, cell adhesion, cell junction, cell membrane, cell projection; NMR {Mus musculus}
Probab=75.90 E-value=26 Score=27.22 Aligned_cols=72 Identities=21% Similarity=0.182 Sum_probs=53.9
Q ss_pred EEEEEeCCC---CeEEEEEeCCCccHHHHHHHHHhhhCCCC--CCeEEEECC--eecCCCcccccccCCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHT---NECFLLDVSEDLELENFKAFCEVQSGYPA--HEIAIEFQG--VLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~---g~~~~leV~~~~TV~dLK~~Ie~e~gIp~--~~Q~Li~~G--k~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+|+|.. .+ ...+++.|..+.-|+-|..+|-+..+++. ++.-|..-- +-|.-...||..|||+.+..++..+.
T Consensus 21 ~V~V~d-~~~~~~~~~~lrV~GdlHIGGvmlklVEki~i~~dWSDhaLWW~~k~~WLlkt~~tLDkygiqADa~L~ftp~ 99 (102)
T 2kmc_A 21 VVRVDH-ANGEQQTEITLRVSGDLHIGGVMLKLVEQMNIAQDWSDYALWWEQKRCWLLKTHWTLDKCGVQADANLLFTPQ 99 (102)
T ss_dssp EEEEEC-TTSSCEEEEEEEECSCCBHHHHHHHHHHHHCCSSCCSSEEEEETTTTEEECCTTSBHHHHTCCTTSCEEEEEC
T ss_pred EEEEec-CCcccCccEEEEEeeccccchhhhhhhhhcccccchHHhhhhhhhhchhhhhhhhhhhhhceeeeeeeeccCC
Confidence 466766 44 35589999999999999998887777765 566676533 33433347999999999999987654
No 169
>2q5w_D Molybdopterin converting factor, subunit 1; MOCO, MPT synthase, MOAD, MOAE, transferase, molybdenum cofactor biosynthesis; 2.00A {Staphylococcus aureus} PDB: 2qie_B*
Probab=75.67 E-value=4.1 Score=29.04 Aligned_cols=55 Identities=15% Similarity=0.109 Sum_probs=39.3
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhCCCCCCe--EEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSGYPAHEI--AIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q--~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
...++++++..||.+|.+.+..... ..... .+..||+....+ .-+++||.|.+..
T Consensus 16 ~~~~~~~~~~~tv~~ll~~l~~~~p-~~~~v~~~v~vNg~~v~~~------~~L~~gD~V~i~p 72 (77)
T 2q5w_D 16 AQEDIVLEQALTVQQFEDLLFERYP-QINNKKFQVAVNEEFVQKS------DFIQPNDTVALIP 72 (77)
T ss_dssp SEEECCCSSCEEHHHHHHHHHHHCG-GGTTCCCEEEETTEEECTT------SEECTTCEEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCc-chhcceEEEEECCEECCCC------CCcCCCCEEEEEC
Confidence 3457788888999999999877631 01223 677899988642 3589999998864
No 170
>1fm0_D Molybdopterin convertin factor, subunit 1; molybdenum cofactor biosynthesis, transferase; 1.45A {Escherichia coli} SCOP: d.15.3.1 PDB: 1fma_D 1jw9_D 1jwa_D* 1jwb_D* 3bii_D 1nvi_D
Probab=75.10 E-value=6.9 Score=28.01 Aligned_cols=54 Identities=17% Similarity=0.180 Sum_probs=37.5
Q ss_pred EEEEEeCCCccHHHHHHHHHhhhC-----CCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 13 CFLLDVSEDLELENFKAFCEVQSG-----YPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 13 ~~~leV~~~~TV~dLK~~Ie~e~g-----Ip~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
..+++ .+..||.+|.+.+..... ++...-.+..||+.... +.-+++||.|.+..
T Consensus 18 ~~~~~-~~~~tv~~ll~~L~~~~p~~~~~l~~~~~~v~vN~~~v~~------~~~l~~gD~V~i~P 76 (81)
T 1fm0_D 18 ATEVA-ADFPTVEALRQHMAAQSDRWALALEDGKLLAAVNQTLVSF------DHPLTDGDEVAFFP 76 (81)
T ss_dssp EEEEC-SCCSBHHHHHHHHHTTCHHHHHHHCCTTCEEEETTEECCT------TCBCCTTCEEEEEC
T ss_pred eEEEc-CCCCCHHHHHHHHHHHChhHHHHhcCCCEEEEECCEECCC------CCCCCCCCEEEEeC
Confidence 45566 677899999998875531 23334467789988743 23589999998864
No 171
>1lya_A Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_A* 1lyw_A*
Probab=72.89 E-value=3.9 Score=31.02 Aligned_cols=67 Identities=15% Similarity=0.233 Sum_probs=42.9
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccC-CHHHH---HHcCchhhhhcc----c------cceecccCcceeeeEEEEee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIM-SLACA---ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAI 278 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~-s~~~a---~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~ 278 (302)
.-|+++.|. ++++++++|||....-+ +..|. ..|+-....|.. | -.+..|-|. +.|.+-.-.
T Consensus 14 ~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~~~C~~~~~y~p~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 91 (97)
T 1lya_A 14 QYYGEIGIGTPPQCFTVVFDTGSSNLWVPSIHCKLLDIACWIHHKYNSDKSSTYVKNGTSFDIHYGSGS--LSGYLSQDT 91 (97)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEE
T ss_pred eEEEEEEECCCCeEEEEEEeCCCCceEEeEcCccCcccccCCCCCCCchhCCCceeCCCcEEEEECCcE--EEEEEEEEE
Confidence 578899998 89999999999987754 45565 366543333321 1 123344444 567776666
Q ss_pred eeecc
Q psy15482 279 AELTN 283 (302)
Q Consensus 279 ~~ig~ 283 (302)
|.||+
T Consensus 92 v~i~g 96 (97)
T 1lya_A 92 VSVPC 96 (97)
T ss_dssp EEESC
T ss_pred EEECC
Confidence 76664
No 172
>1vd2_A Protein kinase C, IOTA type; PB1 domain, OPCA motif, APKC, ZIP/P62, MEK5, molecular recognition, transferase; NMR {Homo sapiens} SCOP: d.15.2.2 PDB: 1wmh_A
Probab=72.47 E-value=15 Score=27.81 Aligned_cols=45 Identities=7% Similarity=0.174 Sum_probs=37.3
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC-eEEEEC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHE-IAIEFQ 47 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~-Q~Li~~ 47 (302)
|+||.-.+|+.+.+.|+++.+..+|.+++...++++..+ ..|.|.
T Consensus 7 vkvK~~~~gdi~~~~v~~~i~~~~L~~kv~~~~~~~~~~~f~lky~ 52 (89)
T 1vd2_A 7 VRVKAYYRGDIMITHFEPSISFEGLCNEVRDMCSFDNEQLFTMKWI 52 (89)
T ss_dssp EEEEEESSSCEEEEEECTTCCHHHHHHHHHHHTTCCSSCCEEEEEC
T ss_pred EEEEEEeCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCeEEEEEE
Confidence 556654578899999999999999999999999998655 666675
No 173
>2g1e_A Hypothetical protein TA0895; MOAD, molybdopterin, transferase; NMR {Thermoplasma acidophilum} PDB: 2k22_A
Probab=70.93 E-value=14 Score=26.77 Aligned_cols=57 Identities=14% Similarity=0.047 Sum_probs=37.9
Q ss_pred EEEeCCCccHHHHHHHHHhhhC------C-----CCCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 15 LLDVSEDLELENFKAFCEVQSG------Y-----PAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 15 ~leV~~~~TV~dLK~~Ie~e~g------I-----p~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.++++...||.+|.+.+..... + ......+..||+..... .-.+.-+++||.|.+..
T Consensus 18 ~~~~~~~~tv~~ll~~l~~~~p~~~~~~l~~~~g~~~~v~v~vN~~~v~~~--~~~~~~l~~gD~V~i~p 85 (90)
T 2g1e_A 18 EETFNGISKISELLERLKVEYGSEFTKQMYDGNNLFKNVIILVNGNNITSM--KGLDTEIKDDDKIDLFP 85 (90)
T ss_dssp EEEESSCCBHHHHHHHHHHHSCHHHHHHHCCSSCSTTTCEEEESSSBGGGT--CSSSCBCCTTCEEEEEC
T ss_pred EEEcCCCCcHHHHHHHHHHHCcchhhhccccccCcCcceEEEECCEEcccc--CCCCcCCCCCCEEEEeC
Confidence 3566667899999998887641 1 11345677899887521 11234589999998864
No 174
>2l52_A Methanosarcina acetivorans SAMP1 homolog; beta-grAsp fold, protein binding, E1-like, SAMP activator, ELSA, adenylation, ubiquitin; NMR {Methanosarcina acetivorans}
Probab=68.69 E-value=13 Score=28.18 Aligned_cols=68 Identities=13% Similarity=-0.010 Sum_probs=41.5
Q ss_pred CEEEEEeC------CCCeEEEEEeCCCccHHHHHHHHHhhhC-CCC-----C----Ce-------EEEECCeecCCCccc
Q psy15482 1 MKVTVSTQ------HTNECFLLDVSEDLELENFKAFCEVQSG-YPA-----H----EI-------AIEFQGVLLQDNKKT 57 (302)
Q Consensus 1 MqItV~~~------~~g~~~~leV~~~~TV~dLK~~Ie~e~g-Ip~-----~----~Q-------~Li~~Gk~L~D~~~T 57 (302)
|+|+|+.- .+...++++ ..||.+|.+.+..... +.. . .. .+..||+..... .
T Consensus 4 m~v~V~~fa~lr~~~g~~~~~l~---~~tv~~ll~~L~~~~p~l~~~l~~~g~l~~~v~~~~~~~~v~VNg~~v~~~--~ 78 (99)
T 2l52_A 4 AEVKVKLFANLREAAGTPELPLS---GEKVIDVLLSLTDKYPALKYVIFEKGDEKSEILILCGSINILINGNNIRHL--E 78 (99)
T ss_dssp CEEEEEECTHHHHHHSSSEEEEE---CSSHHHHHHHHHHHCGGGTTTSBCSCCTTSSCCCBCSSCEEEETTSCGGGT--T
T ss_pred eEEEEEEeHHHHHHhCCCeEEEe---CCcHHHHHHHHHHHChhHHHHHhcccccccceeccccccEEEECCEEcccc--C
Confidence 68888751 112334444 5899999999887631 111 0 12 577888876421 1
Q ss_pred ccccCCCCCCEEEEEE
Q psy15482 58 LKTHGIQDGDLVLLKH 73 (302)
Q Consensus 58 L~~~gI~dgd~l~L~~ 73 (302)
-.++-+++||.|.+..
T Consensus 79 ~~~~~L~~gD~V~i~p 94 (99)
T 2l52_A 79 GLETLLKDSDEIGILP 94 (99)
T ss_dssp STTSCCCTTEEEEEEC
T ss_pred CCCCCCCCCCEEEEEC
Confidence 1244689999998864
No 175
>1rws_A Hypothetical protein PF1061; residual dipolar couplings, structural genomics, unknown FUN; NMR {Pyrococcus furiosus} SCOP: d.15.3.2 PDB: 1sf0_A
Probab=67.82 E-value=1.9 Score=31.33 Aligned_cols=48 Identities=15% Similarity=0.376 Sum_probs=36.6
Q ss_pred EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEE
Q psy15482 15 LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 15 ~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
++++++..||.+|.+.+ +++.....+..||+.+..+ .-+++||.|.+.
T Consensus 24 ~~~~~~~~Tv~dLl~~L----~~~~~~v~VavNg~~v~~~------~~L~dGD~V~i~ 71 (77)
T 1rws_A 24 EIEWREGMKVRDILRAV----GFNTESAIAKVNGKVVLED------DEVKDGDFVEVI 71 (77)
T ss_dssp CCCCCSSCCHHHHHHTT----TCSSCSSCEEETTEEECSS------SCCCSSCCCBCS
T ss_pred EEECCCCCcHHHHHHHh----CCCCcCEEEEECCEECCCC------CCcCCCCEEEEE
Confidence 45677788999987765 4677777788999988643 468999998764
No 176
>1t6a_A Rbstp2229 gene product; structural genomics, hypothetical protein, PSI, protein structure initiative; HET: MSE; 2.05A {Geobacillus stearothermophilus} SCOP: d.129.8.1
Probab=67.72 E-value=2.4 Score=34.02 Aligned_cols=45 Identities=29% Similarity=0.202 Sum_probs=33.0
Q ss_pred ccccceecccCcceeeeEEEEeeeeecccccchhHH--HHHHHHhhcc
Q psy15482 256 TRWAGIAKGVGVQKILGRIHMAIAELTNFNGDKKKA--LAALLAKSLI 301 (302)
Q Consensus 256 ~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~~~~~~--~~~~~~~~~~ 301 (302)
.||+++..|||+.+.---| ++.+-=|..++||-|| +...|||.|.
T Consensus 64 ~rY~~I~~gv~~e~~~~fI-Qi~LP~~AThGDKgKANEfckfLAK~l~ 110 (126)
T 1t6a_A 64 RLYKGMAISVRTAGEETFI-DIALPPGATHGDKGKANEFSKWLAKTLG 110 (126)
T ss_dssp TTCCEEEEEEEEETTEEEE-EEECCTTCCHHHHHHHHHHHHHHHHHHC
T ss_pred CccceEEEeecccCCcceE-EEECCCCCCcCcchhHHHHHHHHHHHhh
Confidence 3899999999875544334 4445558899999998 5677888763
No 177
>3ivf_A Talin-1; FERM domain, cell membrane, cell projection, cytoskeleton, M phosphoprotein, cell adhesion, structural protein; 1.94A {Mus musculus} PDB: 2kma_A 2kc1_A
Probab=67.52 E-value=23 Score=32.79 Aligned_cols=72 Identities=13% Similarity=0.176 Sum_probs=53.4
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-CCeEEEECC---------eecCCCcccccccCCCCCCEEEE
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA-HEIAIEFQG---------VLLQDNKKTLKTHGIQDGDLVLL 71 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-~~Q~Li~~G---------k~L~D~~~TL~~~gI~dgd~l~L 71 (302)
.+.|.. .+|....++|++.+|+.+|-..|....|+.. +-.-|.+.. ..|+. ++++.+.++....++++
T Consensus 87 ~~~V~l-~dg~~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~~~~~wL~~-~k~l~~q~~~~~~~l~f 164 (371)
T 3ivf_A 87 PLKIRM-LDGTVKTIMVDDSKTVTDMLMTICARIGITNHDEYSLVRELMEEKKDDELNWLDH-GRTLREQGVEEHETLLL 164 (371)
T ss_dssp EEEEEC-TTSCEEEEEEETTSBHHHHHHHHHHHTTCSCGGGEEEECCC----------CCCT-TSBTGGGTCCTTCEEEE
T ss_pred EEEEEC-cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCccccEEEEEecccccchHHHHHhc-CchhHhhCCCCCceEEE
Confidence 456777 8899999999999999999999999999875 344555432 33443 47888888777777777
Q ss_pred EEec
Q psy15482 72 KHLG 75 (302)
Q Consensus 72 ~~~~ 75 (302)
..+-
T Consensus 165 rvKf 168 (371)
T 3ivf_A 165 RRKF 168 (371)
T ss_dssp EECC
T ss_pred EEEE
Confidence 5553
No 178
>1ip9_A BEM1 protein; ubiquitin alpha/beta roll, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1ipg_A 2kfk_A
Probab=67.14 E-value=8.4 Score=29.10 Aligned_cols=41 Identities=10% Similarity=0.182 Sum_probs=32.3
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE 45 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li 45 (302)
|+|.|-. .+..|.|-|+++.+..+|+.+|.....+. +..|+
T Consensus 13 ~KVK~yy--~DDIiAIrvP~di~~~~L~dKi~~RLk~~--~~~l~ 53 (85)
T 1ip9_A 13 TKIKFYY--KDDIFALMLKGDTTYKELRSKIAPRIDTD--NFKLQ 53 (85)
T ss_dssp EEEEECB--TTCCEEEEECSCCCHHHHHHHHHHHHTSS--CEEEE
T ss_pred eEEEEEe--cCcEEEEECCCCCCHHHHHHHHHHHhccc--ceEEE
Confidence 3455544 57899999999999999999999998883 44444
No 179
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=63.40 E-value=6.4 Score=39.02 Aligned_cols=61 Identities=13% Similarity=0.244 Sum_probs=50.6
Q ss_pred EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC------CeecCCCccccccc--CCCCCCEEEEEEec
Q psy15482 15 LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ------GVLLQDNKKTLKTH--GIQDGDLVLLKHLG 75 (302)
Q Consensus 15 ~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~------Gk~L~D~~~TL~~~--gI~dgd~l~L~~~~ 75 (302)
.+-|+.+.+|.+|-..|-...|+|++.-..+|. ...|++.+.|++++ +|.+||+|......
T Consensus 150 ~~~v~~~~kv~~l~~~i~~~~g~p~dt~l~lyEEi~~~~ie~l~~~~~t~~~~~~eL~~GdII~fQ~~~ 218 (530)
T 2ylm_A 150 HIYTPISCKIRDLLPVMCDRAGFIQDTSLILYEEVKPNLTERIQDYDVSLDKALDELMDGDIIVFQKDD 218 (530)
T ss_dssp EEEEETTCBGGGTHHHHHHHHTCCTTCCEEEEEEEETTEEEECCCSSSBHHHHSTTCCTTEEEEEEECC
T ss_pred EEEECCCCCHHHHHHHHHHHcCCCCCCceEEEEecCCCceeEcccccccHHHHHhcccCCCEEEEEecC
Confidence 467999999999999999999999988777775 33456445899999 99999999887653
No 180
>2inc_C TOUB protein; DIIRON, 4-helix bundle, carboxylate bridge, metalloenzyme, oxidoreductase; HET: P6G; 1.85A {Pseudomonas stutzeri} SCOP: d.15.12.1 PDB: 2ind_C* 3n20_C* 1t0r_C 1t0s_C 1t0q_C* 3n1x_C 3n1y_C* 3n1z_C* 2rdb_C* 3rn9_C* 3rna_C 3rnb_C 3rnc_C 3rne_C 3rnf_C* 3rng_C
Probab=63.08 E-value=45 Score=24.94 Aligned_cols=59 Identities=12% Similarity=0.244 Sum_probs=47.8
Q ss_pred EEEEeCCCccHHHHHHHHHhhh-C--C---CCCCeEEEECC--eecCCCcccccccCCCCCCEEEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCEVQS-G--Y---PAHEIAIEFQG--VLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~-g--I---p~~~Q~Li~~G--k~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.-+.|+.+.|+.++-++++... | + |..-.+..++| +.|..+ .|+.+.||+.-+.|.+..
T Consensus 15 ~LV~VDt~dTmdqVA~kvA~HsVGrRV~p~p~~~~rVr~~G~~~~~pr~-~tvae~gl~P~e~vev~~ 81 (83)
T 2inc_C 15 QLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRG-MIVSDAGLRPTETLDIIF 81 (83)
T ss_dssp EEEEECTTCBHHHHHHHHHTTTBTTTBCCCTTSEEEEEETTTCCEECTT-CBGGGSCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceecCCCCCCeEEEEecCCccCCCCC-CEeeccCCCCceEEEEEE
Confidence 4579999999999999998763 3 3 22346788999 889886 899999999999988754
No 181
>2l9b_A MRNA 3'-END-processing protein RNA15; 3' END mRNA maturation, transcription; NMR {Saccharomyces cerevisiae}
Probab=62.02 E-value=6.2 Score=31.18 Aligned_cols=27 Identities=19% Similarity=0.235 Sum_probs=19.0
Q ss_pred HHHHHHhcCHHHHHHHHhcChhHHHHh
Q psy15482 117 TVRQLLLDNPKEIALLQQNNPRLADAL 143 (302)
Q Consensus 117 ~iR~~~l~NP~~~~~L~~~NPeLa~al 143 (302)
.++.+..+||.....|-.+||+|+-||
T Consensus 60 qmK~~~~~nP~~a~~LL~q~PQLAyAl 86 (109)
T 2l9b_A 60 KFQEWTRAHPEDAASLLELCPQLSFVT 86 (109)
T ss_dssp HHHHHHHHCHHHHHHHHHHCHHHHHHH
T ss_pred HHHHHHHhCHHHHHHHHHHCchHHHHH
Confidence 345556688876666667888888777
No 182
>1ef1_A Moesin; membrane, FERM domain, tail domain, membrane protein; 1.90A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1sgh_A 1j19_A 2emt_A 2ems_A 2d10_A 2d11_A 2yvc_A 2d2q_A 2zpy_A 1gc7_A 1gc6_A 1ni2_A
Probab=61.53 E-value=39 Score=29.93 Aligned_cols=70 Identities=13% Similarity=0.201 Sum_probs=49.8
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC-eEEEE---CCe--ecCCCcccccccCCCCCCEEEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHE-IAIEF---QGV--LLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~-Q~Li~---~Gk--~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
+.+.|.. .+| ++.++|++.+|+.+|-..|....|+.... .-|.| +|. .|+. ++++.+.+++.+....+..
T Consensus 2 i~~~V~l-~d~-~~~~~v~~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~-~~~l~~q~~~~~~~~~l~f 77 (294)
T 1ef1_A 2 ISVRVTT-MDA-ELEFAIQPNTTGKQLFDQVVKTIGLREVWFFGLQYQDTKGFSTWLKL-NKKVTAQDVRKESPLLFKF 77 (294)
T ss_dssp EEEEEEE-TTE-EEEEEECTTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCS-SSBGGGSCBCCCSSEEEEE
T ss_pred EEEEEEE-CCc-eEEEEECCCCcHHHHHHHHHHHcCCCCcceeEEEEECCCCceeeccc-ccCHHhhccCCCCCEEEEE
Confidence 3567777 666 67899999999999999999999987643 45555 343 2444 3788888766665554433
No 183
>2ylm_A Ubiquitin carboxyl-terminal hydrolase 7; UBL; 2.70A {Homo sapiens}
Probab=60.47 E-value=6.8 Score=38.83 Aligned_cols=33 Identities=18% Similarity=0.276 Sum_probs=30.6
Q ss_pred EEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEF 46 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~ 46 (302)
.++.|..++|+.+||+.|+.+.|+|++.|||..
T Consensus 38 ~~~rv~k~~~~~~l~~~va~~lg~~~~~~RlW~ 70 (530)
T 2ylm_A 38 TVFKVLKNSSLAEFVQSLSQTMGFPQDQIRLWP 70 (530)
T ss_dssp EEEEEETTSBHHHHHHHHHHHHTSCGGGEEEEE
T ss_pred ceEEEcCcCCHHHHHHHHHHHhCcCcccEEEEE
Confidence 367899999999999999999999999999974
No 184
>2k9x_A Tburm1, uncharacterized protein; unknown function; NMR {Trypanosoma brucei}
Probab=60.37 E-value=3.2 Score=32.65 Aligned_cols=68 Identities=12% Similarity=0.067 Sum_probs=39.8
Q ss_pred CEEEEEeC-----CCCeEEEEEeCC----CccHHHHHHHHHhhhCCCCCCeE---------------EEECCeecCCCcc
Q psy15482 1 MKVTVSTQ-----HTNECFLLDVSE----DLELENFKAFCEVQSGYPAHEIA---------------IEFQGVLLQDNKK 56 (302)
Q Consensus 1 MqItV~~~-----~~g~~~~leV~~----~~TV~dLK~~Ie~e~gIp~~~Q~---------------Li~~Gk~L~D~~~ 56 (302)
|+|+|+.- ..|+...++++. ..||.+|-..+.... +...-. ++-||+...
T Consensus 5 m~v~V~f~g~l~~l~g~~~~v~l~~~~g~~~TV~dLl~~L~~~~--~~~r~~lf~~~g~~~lrpgIlVLVNg~d~e---- 78 (110)
T 2k9x_A 5 NHITVQFAGGCELLFAKQTSLQLDGVVPTGTNLNGLVQLLKTNY--VKERPDLLVDQTGQTLRPGILVLVNSCDAE---- 78 (110)
T ss_dssp SCCEEEEESSCGGGTTSCSEECCCCSCGGGCCHHHHHHHHTTTT--CCSCHHHHBCSSSSSBCTTEEEEESSSBHH----
T ss_pred cEEEEEEEecHHHHhCCeEEEEeCCcCCCCccHHHHHHHHHHHc--cccchhhEecCCCcccCCCeEEEECCeeee----
Confidence 66777741 224555777773 259999988888764 221222 223443321
Q ss_pred cc--cccCCCCCCEEEEEEe
Q psy15482 57 TL--KTHGIQDGDLVLLKHL 74 (302)
Q Consensus 57 TL--~~~gI~dgd~l~L~~~ 74 (302)
.| .+|-+++||.|.+...
T Consensus 79 ~l~gldt~L~dgD~V~fist 98 (110)
T 2k9x_A 79 VVGGMDYVLNDGDTVEFIST 98 (110)
T ss_dssp HHTSSCCCCCSSCEEEEEEC
T ss_pred ccCCcccCCCCcCEEEEeCC
Confidence 11 2467999999888654
No 185
>3qij_A Protein 4.1; cytoskeleton, structural genomics, structural genomics conso SGC; 1.80A {Homo sapiens} PDB: 1gg3_A 3bin_A 2he7_A 2rq1_A
Probab=60.17 E-value=32 Score=30.93 Aligned_cols=72 Identities=8% Similarity=-0.042 Sum_probs=50.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC-eEEEEC---C--eecCCCcccccccCCCCCCEEEEEEe
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHE-IAIEFQ---G--VLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~-Q~Li~~---G--k~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+.+.|.. .+|...+++|++.+|+.+|-..|....|+.... .-|.|. | ..|+.+ +++.+......-.+.+..+
T Consensus 18 ~~~~V~l-ldgt~~~~~vd~~tt~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~~wLd~~-k~i~~q~~~~~~~l~frvk 95 (296)
T 3qij_A 18 GHCKVSL-LDDTVYECVVEKHAKGQDLLKRVCEHLNLLEEDYFGLAIWDNATSKTWLDSA-KEIKKQVRGVPWNFTFNVK 95 (296)
T ss_dssp CEEEEEC-TTSCEEEEECCTTCBHHHHHHHHHHHHTCSSGGGEEEEEEEETTEEEECCTT-SBHHHHC---CCEEEEEES
T ss_pred EEEEEEc-cCCCEEEEEECCCCCHHHHHHHHHHHcCCCCcceeEEEEEcCCCccchhccc-hhHHHhcCCCCcEEEEEEE
Confidence 4577888 899999999999999999999999999987643 456552 3 235544 7777765443445555443
No 186
>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*
Probab=59.92 E-value=12 Score=33.97 Aligned_cols=46 Identities=17% Similarity=0.437 Sum_probs=32.2
Q ss_pred CCCHHHHHHHHhcCHHH-HHHH---HhcChhHHHHhhcCChHHHHHHHHH
Q psy15482 112 SDDPATVRQLLLDNPKE-IALL---QQNNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 112 ~~npe~iR~~~l~NP~~-~~~L---~~~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
.+||++.+++++.|+.- ++.| ++.--+|.++|..+|.+.|.+.|..
T Consensus 256 ~~~p~~w~di~~~N~~~~~~~l~~~~~~l~~l~~~l~~~d~~~l~~~~~~ 305 (314)
T 3ggo_A 256 KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKE 305 (314)
T ss_dssp TSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46899999999988863 3433 4445567777777787777777744
No 187
>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}
Probab=58.10 E-value=8.4 Score=35.88 Aligned_cols=45 Identities=16% Similarity=0.187 Sum_probs=24.5
Q ss_pred CCCHHHHHHHHhcCHH----HHHHHHhcChhHHHHhhcCChHHHHHHHHH
Q psy15482 112 SDDPATVRQLLLDNPK----EIALLQQNNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 112 ~~npe~iR~~~l~NP~----~~~~L~~~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
.+||++.++++++|+. .++.+.+.--+|.++|.++| +.|.+++..
T Consensus 235 ~s~p~lw~di~~~N~~~~~~~l~~~~~~L~~l~~~l~~~d-~~l~~~~~~ 283 (341)
T 3ktd_A 235 GTDPGLVRAMCESNAGPLVKALDEALAILHEAREGLTAEQ-PNIEQLADN 283 (341)
T ss_dssp GSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTSSS-CCCHHHHHH
T ss_pred cCCHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHccc-HHHHHHHHH
Confidence 4566666666666662 22333344445555665555 566665544
No 188
>1h4r_A Merlin; FERM, neurofibromatosis, NF2, structural protein, cytoskeleton, anti-oncogene; 1.8A {Homo sapiens} SCOP: a.11.2.1 b.55.1.5 d.15.1.4 PDB: 1isn_A 3u8z_A
Probab=57.15 E-value=41 Score=30.20 Aligned_cols=68 Identities=10% Similarity=0.177 Sum_probs=48.9
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEE--CCee--cCCCcccccccCCCCCCEEEEE
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEF--QGVL--LQDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~--~Gk~--L~D~~~TL~~~gI~dgd~l~L~ 72 (302)
.+.|.. .+| .+.++|++++|+.+|-..|....|+... -.-|.| +|.. |+.+ ++|.+.+++.+....+.
T Consensus 24 ~~~V~l-ldg-~~~~~v~~~t~~~el~~~v~~~l~L~e~~~FgL~~~~~~~~~wL~~~-~~i~~q~~~~~~~~~l~ 96 (314)
T 1h4r_A 24 TVRIVT-MDA-EMEFNCEMKWKGKDLFDLVCRTLGLRETWFFGLQYTIKDTVAWLKMD-KKVLDHDVSKEEPVTFH 96 (314)
T ss_dssp EEEEEC-SSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEETTEEEECCTT-SBGGGSSCCCSSSEEEE
T ss_pred EEEEEe-CCc-eEEEEeCCCCcHHHHHHHHHHHhCCCCCccceEEEEeCCcCeeCCCc-cCHHHcCCCCCCCEEEE
Confidence 355666 677 7889999999999999999999999853 345555 4433 5554 78888877666554433
No 189
>1wgr_A Growth factor receptor-bound protein 7; RA domain, GRB7, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=57.01 E-value=19 Score=27.89 Aligned_cols=71 Identities=8% Similarity=0.068 Sum_probs=48.1
Q ss_pred EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCe-EEE-E-----CCeecCCCcc---cccccCCCCCCEEEEEE
Q psy15482 4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEI-AIE-F-----QGVLLQDNKK---TLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q-~Li-~-----~Gk~L~D~~~---TL~~~gI~dgd~l~L~~ 73 (302)
.|-. .+|...+|+|++++|+.|+-.++..+.++..+.- .|+ + --|.++|.+. .|+...+..+..++...
T Consensus 13 kvf~-~Dgssksi~V~~~~Ta~dv~~~L~~K~~~~~~~~WaLvE~~P~L~~ER~~EDHE~vvevl~~W~~~s~nr~~F~k 91 (100)
T 1wgr_A 13 KVYS-EDGACRSVEVAAGATARHVCEMLVQRAHALSDETWGLVECHPHLALERGLEDHESVVEVQAAWPVGGDSRFVFRK 91 (100)
T ss_dssp EEEE-TTSCEEEEEECTTCCHHHHHHHHHCSSSCCCCCCCCEEEEETTTTEEEEECSSSCHHHHHTTSCSSSCCEEEECS
T ss_pred EEEe-cCCCEEEEEECCCCcHHHHHHHHHHHcCCCCCCCeEEEEecCCCCcEEeccCchhHHHHHhhCccCCCcEEEEec
Confidence 3445 6889999999999999999999999988764332 332 1 2356777522 24555666666666654
Q ss_pred ec
Q psy15482 74 LG 75 (302)
Q Consensus 74 ~~ 75 (302)
+.
T Consensus 92 r~ 93 (100)
T 1wgr_A 92 NF 93 (100)
T ss_dssp CC
T ss_pred ch
Confidence 43
No 190
>2lnm_A Protein TIC 40, chloroplastic; translocon, import, TIC40-NP, protein transport; NMR {Arabidopsis thaliana}
Probab=56.54 E-value=8.7 Score=26.82 Aligned_cols=10 Identities=40% Similarity=0.614 Sum_probs=4.6
Q ss_pred hcCHHHHHHH
Q psy15482 123 LDNPKEIALL 132 (302)
Q Consensus 123 l~NP~~~~~L 132 (302)
++||.+++.|
T Consensus 18 m~dP~~~~~l 27 (62)
T 2lnm_A 18 FQNPRVQAAL 27 (62)
T ss_dssp TTSHHHHHHH
T ss_pred cCCHHHHHHH
Confidence 4455444443
No 191
>3u52_E Phenol hydroxylase component PHO; 4-helix bundle, dioxygen, hydrocarbons, oxidore; HET: MPO EPE; 1.95A {Pseudomonas stutzeri} PDB: 2inn_E* 2inp_E
Probab=56.41 E-value=44 Score=26.66 Aligned_cols=59 Identities=12% Similarity=0.122 Sum_probs=44.7
Q ss_pred EEEEeCCCccHHHHHHHHH-hhhC-------CCCCCeEEEECCeec-CCCcccccccCCCCCCEEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCE-VQSG-------YPAHEIAIEFQGVLL-QDNKKTLKTHGIQDGDLVLLK 72 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie-~e~g-------Ip~~~Q~Li~~Gk~L-~D~~~TL~~~gI~dgd~l~L~ 72 (302)
+.+-|+|+++..+|-+.+- .-++ |+-+.-.-..+|++. .|.+++|.+.||.--|+|..+
T Consensus 40 ~~~p~pP~mpFg~lv~~vl~~~~~~hPDfa~idws~v~W~l~g~pftPD~~kSLaenG~~HKs~lrf~ 107 (119)
T 3u52_E 40 FALLVQPGMTFSALVDEILKPATAAHPDSAKADFLNAEWLLNDEPFTPKADASLKEQGIDHKSMLTVT 107 (119)
T ss_dssp EEEEECTTSBHHHHHHHTHHHHTTTSTTGGGCCTTSSEEEETTEEECCCTTSBTTTTTCCTTEEEEEE
T ss_pred eeecCCCCCCHHHHHHHhcchhhhcCCccccCCcchheEEECCccCCCChhhhHHHcCCCchheEEEe
Confidence 5788999999999876443 3344 444444567799998 455689999999999988764
No 192
>2llw_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=55.31 E-value=6.7 Score=28.48 Aligned_cols=19 Identities=21% Similarity=0.503 Sum_probs=8.6
Q ss_pred CCCHHHHHHHHhcCHHHHHHH
Q psy15482 112 SDDPATVRQLLLDNPKEIALL 132 (302)
Q Consensus 112 ~~npe~iR~~~l~NP~~~~~L 132 (302)
++|||. ..+++||.++..|
T Consensus 17 m~dPEi--~~im~DP~~~~~l 35 (71)
T 2llw_A 17 MKDPEV--AAIMQDPVMQSIL 35 (71)
T ss_dssp HHSHHH--HHHHTCTHHHHHH
T ss_pred hcCHHH--HHHhCCHHHHHHH
Confidence 455553 2234555554443
No 193
>2ns5_A Partitioning-defective 3 homolog; cell polarity, N-terminal domain, PB1 domain, asymmetric membrane localization, signaling protein; NMR {Rattus norvegicus}
Probab=51.85 E-value=73 Score=23.85 Aligned_cols=69 Identities=14% Similarity=0.102 Sum_probs=43.9
Q ss_pred CEEEEEeCCCCeEEEEEeC-CCccHHHHHHHHHhh----hCCCCCCeE----EEE-CCeecCCCcccccccCCCCCCEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVS-EDLELENFKAFCEVQ----SGYPAHEIA----IEF-QGVLLQDNKKTLKTHGIQDGDLVL 70 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~-~~~TV~dLK~~Ie~e----~gIp~~~Q~----Li~-~Gk~L~D~~~TL~~~gI~dgd~l~ 70 (302)
|+|||.. .+..+.|... .+.||.+|-..--.. .+-.++.-. |-+ .|-.|..+ ..|.+. +.|+|.|.
T Consensus 3 MKvtV~f--g~~~vvVPC~dg~~tV~~L~~~A~~RY~K~~~k~~~~~v~V~~l~~~~ggiLD~D-D~l~dV-ldD~e~i~ 78 (85)
T 2ns5_A 3 FKVTVCF--GRTRVDVPCGDGRMKVFSLIQQAVTRYRKAVAKDPNYWIQVHRLEHGDGGILDLD-DILCDV-ADDKDRLV 78 (85)
T ss_dssp EEEEEEE--TTEEEEEEESSSCCCHHHHHHHHHHHHHHHTTCCTTSCEEEEEEECSSSCEECTT-SCHHHH-SCTTEEEE
T ss_pred cEEEEEE--CCEEEEEECCCCcccHHHHHHHHHHHHHHhcCCCCCcEEEEEEEEeCCCcEeCcc-cchhhh-ccCcceEE
Confidence 8999999 5777778874 456998886533322 333233322 233 67777654 688887 67888876
Q ss_pred EEE
Q psy15482 71 LKH 73 (302)
Q Consensus 71 L~~ 73 (302)
...
T Consensus 79 A~~ 81 (85)
T 2ns5_A 79 AVF 81 (85)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
No 194
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=50.54 E-value=14 Score=32.09 Aligned_cols=70 Identities=13% Similarity=0.244 Sum_probs=46.0
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccC-CHHHH--HHcCchhhhhcc----c------cceecccCcceeeeEEEEeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIM-SLACA--ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIA 279 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~-s~~~a--~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~ 279 (302)
.-|+++.|. ++++++++|||...+.+ +..|. ..|+-....|.. | -.+..|-|. +-|.+..-.+
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 91 (239)
T 1b5f_A 14 SYFGEIGIGTPPQKFTVIFDTGSSVLWVPSSKCINSKACRAHSMYESSDSSTYKENGTFGAIIYGTGS--ITGFFSQDSV 91 (239)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSCHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEEcCCCCCCcccCCCCCCCCccCCCeeeCCcEEEEEECCCc--EEEEEEEEEE
Confidence 468899998 79999999999988765 44563 456543333321 1 123345554 5688887788
Q ss_pred eeccccc
Q psy15482 280 ELTNFNG 286 (302)
Q Consensus 280 ~ig~~~~ 286 (302)
.+|+..+
T Consensus 92 ~~g~~~v 98 (239)
T 1b5f_A 92 TIGDLVV 98 (239)
T ss_dssp EETTEEE
T ss_pred EECCcEE
Confidence 8887654
No 195
>2g5c_A Prephenate dehydrogenase; TYRA, oxidoreductase; HET: NAD; 1.90A {Aquifex aeolicus} SCOP: a.100.1.12 c.2.1.6
Probab=50.48 E-value=29 Score=30.27 Aligned_cols=46 Identities=17% Similarity=0.390 Sum_probs=35.1
Q ss_pred CCCHHHHHHHHhcCHH-HH---HHHHhcChhHHHHhhcCChHHHHHHHHH
Q psy15482 112 SDDPATVRQLLLDNPK-EI---ALLQQNNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 112 ~~npe~iR~~~l~NP~-~~---~~L~~~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
..||+++++++.+|+. .. ..+.+.--.|.++|.++|.+.|.+.|..
T Consensus 224 ~~~p~~~~~~~~sn~~~~~~~l~~~~~~l~~~~~~i~~~d~~~l~~~~~~ 273 (281)
T 2g5c_A 224 KSDPIMWRDIFLENKENVMKAIEGFEKSLNHLKELIVREAEEELVEYLKE 273 (281)
T ss_dssp CSCHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3799999999999994 23 4444444678888988898888888854
No 196
>2i1j_A Moesin; FERM, coiled-coil, C-ermad, ERM, radixin, ezrin, MER actin binding, masking, regulation, SELF-inhibition, cell A membrane protein; 2.10A {Spodoptera frugiperda} PDB: 2i1k_A 1e5w_A
Probab=49.61 E-value=54 Score=32.68 Aligned_cols=70 Identities=10% Similarity=0.132 Sum_probs=49.7
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC-CeEEEEC---C--eecCCCcccccccCCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH-EIAIEFQ---G--VLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~-~Q~Li~~---G--k~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
.+.|.. .+| ++.+.|++++|+.+|-..|....|+... -.-|.|- | ..|+.+ +++.+.+++.+..+.+..+
T Consensus 6 ~v~V~l-lDg-t~e~~vd~~tt~~ell~~V~~~LgL~e~~~FGL~~~d~~~~~~WLd~~-k~i~~q~~~~~~~~~L~FR 81 (575)
T 2i1j_A 6 NVRVTT-MDA-ELEFAIQQTTTGKQLFDQVVKTIGLREVWFFGLQYTDSKGDLTWIKLY-KKVMQQDVKKENPLQFKFR 81 (575)
T ss_dssp EEEEEC-SSC-EEEEEEETTCBHHHHHHHHHHHHTCCCGGGEEEEEEBTTSCEEECCTT-SBGGGSCBCCCSSEEEEEE
T ss_pred EEEEEe-CCC-eEEEEECCCCCHHHHHHHHHHHcCCCCccceeEEEEecCcchhHhhcc-ccHHHhcccCCCCeEEEEE
Confidence 355666 666 6789999999999999999999999753 3566652 2 234443 7888887776665554433
No 197
>3ge3_C Toluene-4-monooxygenase system protein B; DIIRON hydroxylase, effector protein, T201A, aromatic hydrocarbons catabolism, FAD, flavoprotein; 1.52A {Pseudomonas mendocina} SCOP: d.15.12.0 PDB: 3dhh_C* 3dhg_C* 3dhi_C 3ge8_C 3i5j_C 3i63_C 3q14_C 3q2a_C* 3q3m_C* 3q3n_C* 3q3o_C* 3rmk_C* 3ri7_C*
Probab=49.40 E-value=80 Score=23.61 Aligned_cols=59 Identities=7% Similarity=0.102 Sum_probs=48.0
Q ss_pred EEEEeCCCccHHHHHHHHHhhh-C--CC--CCCeEEEECCee--cCCCcccccccCCCCCCEEEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCEVQS-G--YP--AHEIAIEFQGVL--LQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~-g--Ip--~~~Q~Li~~Gk~--L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.-+.|+.+.|+.++-++++... | ++ +.-.+..++|.. |..+ .|+.+.||+.-+.|.+..
T Consensus 17 ~Lv~VDt~dtmdqVA~k~A~h~VGrrv~p~pg~lrVr~~G~~~~~Pr~-mtVaeaGl~Pme~vev~~ 82 (84)
T 3ge3_C 17 QLVVVDLNDSMDQVAEKVAYHCVNRRVAPREGVMRVRKHRSTELFPRD-MTIAESGLNPTEVIDVVF 82 (84)
T ss_dssp EEEEEETTCBHHHHHHHHHHTTBTTTBCCCSSCEEEEETTCSCBCCTT-CBHHHHCCCTTCEEEEEE
T ss_pred EEEEecCCCcHHHHHHHHhhhhcceeeCCCCCcEEEEECCCcccCCCC-CEeeccCCCcceEEEEEE
Confidence 4578999999999999998763 3 21 136788899998 8885 999999999999998764
No 198
>1j0g_A Hypothetical protein 1810045K17; ubiquitin-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: d.15.1.6 PDB: 1wxs_A 1l7y_A
Probab=48.88 E-value=41 Score=25.16 Aligned_cols=61 Identities=18% Similarity=0.160 Sum_probs=48.1
Q ss_pred EEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC-CeecCCCcccccccCCCCCCEEEEEEec
Q psy15482 14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ-GVLLQDNKKTLKTHGIQDGDLVLLKHLG 75 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~-Gk~L~D~~~TL~~~gI~dgd~l~L~~~~ 75 (302)
..+.|+++.....+-...++++.+|+..-.++-+ |-=+.. ..|-...=+|-|+-|.|..|-
T Consensus 26 kvlsVPE~~PftAVlkfaaEeF~vp~~TsAiiT~dGiGInP-~QtAGnvFlKhGseLrlIPRD 87 (92)
T 1j0g_A 26 KVLSVPESTPFTAVLKFAAEEFKVPAATSAIITNDGIGINP-AQTAGNVFLKHGSELRIIPRD 87 (92)
T ss_dssp EEEEEETTSBHHHHHHHHHHHTTCCSSSEEEECTTSCCCCC-SSBHHHHHHHTCSEEEEEECC
T ss_pred eEEecCccCchHHHHHHHHHHcCCCccceEEEecCCcccCh-hhccchhhhhcCceeEecccc
Confidence 4689999999999999999999999988777765 433444 467777778888999888764
No 199
>2zjd_A Microtubule-associated proteins 1A/1B light chain 3B precursor; autophagy, LC3, microtubule-associated protein 1 light chain 3, cytoplasm, cytoplasmic vesicle, lipoprotein; 1.56A {Homo sapiens} SCOP: d.15.1.3 PDB: 2z0e_B 2zzp_B 2z0d_B 1ugm_A 1v49_A 2k6q_A 3eci_A
Probab=48.39 E-value=19 Score=29.14 Aligned_cols=58 Identities=5% Similarity=0.058 Sum_probs=42.7
Q ss_pred EEeCCCccHHHHHHHHHhhhCCCCCCeEEE-ECCeecCCCccccccc----CCCCCCEEEEEEe
Q psy15482 16 LDVSEDLELENFKAFCEVQSGYPAHEIAIE-FQGVLLQDNKKTLKTH----GIQDGDLVLLKHL 74 (302)
Q Consensus 16 leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li-~~Gk~L~D~~~TL~~~----gI~dgd~l~L~~~ 74 (302)
.-|+.+.||.+|...|....++++++-..+ |.+..+...+.+++++ +-. |..|+|...
T Consensus 57 flVp~~~tv~qf~~~iRkrL~l~~~~alFl~~vn~~~p~~~~~m~~lY~~~kde-DGfLyv~Ys 119 (130)
T 2zjd_A 57 FLVPDHVNMSELIKIIRRRLQLNANQAFFLLVNGHSMVSVSTPISEVYESEKDE-DGFLYMVYA 119 (130)
T ss_dssp EEEETTCBHHHHHHHHHHHHTCCTTCCEEEEETTTEECCTTSBHHHHHHHHCCT-TSCEEEEEE
T ss_pred EEcCCCCcHHHHHHHHHHHhCCCCCceEEEEEECCccCCccchHHHHHHHhCCC-CCEEEEEEe
Confidence 358889999999999999999999876666 7777775545777765 223 445666544
No 200
>1q1o_A Cell division control protein 24; PB1 domain, PCCR, PC motif, OPCA motif, yeast, cell polarity, protein-protein interaction; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 2kfj_A 2kfk_B
Probab=47.45 E-value=23 Score=27.32 Aligned_cols=29 Identities=14% Similarity=0.138 Sum_probs=26.6
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhhCCCC
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQSGYPA 39 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~gIp~ 39 (302)
+..++|-|+++.+..+|..+|..+++++.
T Consensus 22 ~d~~~i~V~~~i~f~~L~~kI~~Kl~~~~ 50 (98)
T 1q1o_A 22 SEIFTLLVEKVWNFDDLIMAINSKISNTH 50 (98)
T ss_dssp CEEEEEEECTTCCHHHHHHHHHHHHHHHC
T ss_pred CcEEEEEecCCCCHHHHHHHHHHHHcCCc
Confidence 67899999999999999999999998763
No 201
>2qsf_X RAD23, UV excision repair protein RAD23; alpha-beta structure, beta hairpin, transglutaminase fold, DNA-damage recognition, DNA repair; HET: DNA; 2.35A {Saccharomyces cerevisiae} PDB: 2qsg_X* 2qsh_X* 1x3z_B* 1x3w_B* 3esw_B*
Probab=46.86 E-value=6 Score=33.65 Aligned_cols=49 Identities=20% Similarity=0.266 Sum_probs=29.2
Q ss_pred Hh-cCHHHHHH--HHhcChhHHHHhhc----CChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Q psy15482 122 LL-DNPKEIAL--LQQNNPRLADALLN----GSPEDFERILRQQYEEREKREQLRLRMLNAHPFD 179 (302)
Q Consensus 122 ~l-~NP~~~~~--L~~~NPeLa~al~~----~d~e~f~~~lr~~~~~~~~~e~~~~~~l~~DP~d 179 (302)
++ +||++.++ +.++||+|-+.|.. .||+.++.+. .. .++-++|++ +|.+
T Consensus 28 L~~~~Pqf~qlRq~vqqNPqlL~~lLqqig~~NPqL~qlI~-qN-------qe~Fl~mLn-ep~~ 83 (171)
T 2qsf_X 28 IGLTVEDLLSLRQVVSGNPEALAPLLENISARYPQLREHIM-AN-------PEVFVSMLL-EAVG 83 (171)
T ss_dssp CCCCHHHHHHHHHHHHTCGGGHHHHHHHHHHHCTTHHHHHH-HC-------HHHHHHHHH-HCCC
T ss_pred HHhcCHHHHHHHHHHHHCHHHHHHHHHHHHhhCHHHHHHHH-HC-------HHHHHHHHh-Cccc
Confidence 44 88874332 34899998888765 5776655433 21 124567775 4543
No 202
>3hvz_A Uncharacterized protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium; 2.20A {Clostridium leptum}
Probab=45.97 E-value=42 Score=24.43 Aligned_cols=62 Identities=13% Similarity=0.185 Sum_probs=42.1
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCcccccccCCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~~ 74 (302)
+|+|.+ .+|+. ++++...|+.|+-..|....|-.. .--..||+...- ++-+++||.|.+...
T Consensus 7 ~i~v~t-P~G~~--~~lp~GaT~~D~A~~Ih~~lg~~~--v~AkVNG~~v~L------~~~L~~gd~VeIit~ 68 (78)
T 3hvz_A 7 EVFVFT-PKGDV--ISLPIGSTVIDFAYAIHSAVGNRM--IGAKVDGRIVPI------DYKVKTGEIIDVLTT 68 (78)
T ss_dssp EEEEEC-TTSCE--EEEETTCBHHHHHHHHCHHHHHTE--EEEEETTEEECT------TCBCCTTCBEEEEEC
T ss_pred eEEEEC-CCCCE--EEecCCCCHHHHHHHhhhhhhcce--EEEEECCEEcCC------CcccCCCCEEEEEcc
Confidence 478888 67766 457777999999888866544211 222458876643 245899999988754
No 203
>1mpp_A Pepsin; hydrolase(acid proteinase); 2.00A {Rhizomucor pusillus} SCOP: b.50.1.2 PDB: 2asi_A* 2rmp_A*
Probab=45.32 E-value=17 Score=33.19 Aligned_cols=71 Identities=18% Similarity=0.221 Sum_probs=47.4
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccC-CHHHH--HHcCchhhhhcc----c------cceecccCcceeeeEEEEeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIM-SLACA--ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIA 279 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~-s~~~a--~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~ 279 (302)
.-|+++.|. +++++++||||...+.+ +..|. ..|+-....|.. | -.+..|-|. +-|.+..-.+
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v 96 (361)
T 1mpp_A 19 EYAIPVSIGTPGQDFYLLFDTGSSDTWVPHKGCDNSEGCVGKRFFDPSSSSTFKETDYNLNITYGTGG--ANGIYFRDSI 96 (361)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCGGGTCCSSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEcCCCCCeEECCCCCCCCccCCCCCcCCCccCCceEecCCeEEEEECCce--EEEEEEEEEE
Confidence 467899998 89999999999988865 44564 367654444421 1 123345454 5788877788
Q ss_pred eecccccc
Q psy15482 280 ELTNFNGD 287 (302)
Q Consensus 280 ~ig~~~~~ 287 (302)
.||++.+.
T Consensus 97 ~~g~~~v~ 104 (361)
T 1mpp_A 97 TVGGATVK 104 (361)
T ss_dssp EETTEEEE
T ss_pred EECCEEEe
Confidence 88876543
No 204
>3brv_B NF-kappa-B essential modulator; NEMO, IKK-gamma, FIP3, ikkap1, NF-KB essential modulator, at binding, kinase, nucleotide-binding, phosphoprotein; 2.20A {Homo sapiens} PDB: 3brt_B
Probab=44.12 E-value=32 Score=24.87 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=27.7
Q ss_pred HHHHHHHHhcCHHHHHHHHhcChhHHHHhhcCChHHHHH
Q psy15482 115 PATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFER 153 (302)
Q Consensus 115 pe~iR~~~l~NP~~~~~L~~~NPeLa~al~~~d~e~f~~ 153 (302)
||.|..++..|-++++.|+++|-.|.+-. .+...|+.
T Consensus 7 ~e~~q~ll~EN~~LreAlkqsNq~mkeR~--eeL~~wqe 43 (70)
T 3brv_B 7 PETLQRCLEENQELRDAIRQSNQILRERC--EELLHFQA 43 (70)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 78899999999999999988888777766 34444443
No 205
>1v8c_A MOAD related protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, protein binding; 1.60A {Thermus thermophilus} SCOP: d.15.3.1 d.129.5.1
Probab=43.76 E-value=58 Score=27.11 Aligned_cols=56 Identities=9% Similarity=-0.006 Sum_probs=37.5
Q ss_pred EEEeCCCccHHHHHHHHHhhhC-CC---------CCCeEEEECCeecCCCcccccccCCCCCCEEEEEE
Q psy15482 15 LLDVSEDLELENFKAFCEVQSG-YP---------AHEIAIEFQGVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 15 ~leV~~~~TV~dLK~~Ie~e~g-Ip---------~~~Q~Li~~Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
.++++. .||.+|...+..... +. .....+..||+..... .-.++-+++||.|.+..
T Consensus 17 ~~ev~~-~TV~dLl~~L~~~~p~l~~~l~~~~~l~~~v~VaVNg~~v~~~--~~~dt~L~dGDeVai~P 82 (168)
T 1v8c_A 17 QLELPG-ATVGEVLENLVRAYPALKEELFEGEGLAERVSVFLEGRDVRYL--QGLSTPLSPGATLDLFP 82 (168)
T ss_dssp EEECCC-SBHHHHHHHHHHHCGGGHHHHEETTEECTTCEEEETTEEGGGT--TGGGCBCCTTCEEEEEC
T ss_pred eEEECC-CcHHHHHHHHHhhChhhhhhhhcccccCCcEEEEECCEECCCc--CCCccCCCCCCEEEEEC
Confidence 456665 899999998876631 10 1234577899887542 22344699999998864
No 206
>2dbs_A Hypothetical protein TTHC002; extremely thermophili bacteria, structural genomics, NPPSFA; 2.10A {Thermus thermophilus} SCOP: d.374.1.1
Probab=43.36 E-value=51 Score=24.33 Aligned_cols=41 Identities=27% Similarity=0.445 Sum_probs=31.5
Q ss_pred cCCCCHHHHHHHHHHHHHhhHHHHHHHHHHh-CCCCcceeeEEEEEEEEcCeeEEEEE
Q psy15482 175 AHPFDTEAQKLIAEEIKKNNIEANMEAAMEY-NPETFGTVVMLYINCKVNGYPVKAFI 231 (302)
Q Consensus 175 ~DP~d~e~Q~~i~e~i~q~~i~~n~~~A~E~-~PE~f~~v~mlyi~~~ing~~v~a~v 231 (302)
.||++||.-.+ .++-|+|- +||.+-.|.-|| +.|.|++.++
T Consensus 37 L~~dePEvaa~------------AL~~A~eapn~EGwP~VYALF----lqGr~lRLll 78 (90)
T 2dbs_A 37 LPLDEPEVAAQ------------ALAWAMEAPNPEGWPSVYALF----LQGRPIRLLL 78 (90)
T ss_dssp EETTCHHHHHH------------HHHHHHSCCCSSSSCEEEEEE----ETTEEEEEEE
T ss_pred cCCCCHHHHHH------------HHHHHHhCCCCCCChhHHHHH----hCCceeEEee
Confidence 58999997554 36688998 999999888888 3577776654
No 207
>3qvc_A Histo-aspartic protease; HAP, plasmepsin, zymogen, hydrolase; 2.10A {Plasmodium falciparum} PDB: 3qvi_A* 3fns_A 3fnt_A* 3fnu_A*
Probab=42.96 E-value=19 Score=34.60 Aligned_cols=72 Identities=13% Similarity=0.272 Sum_probs=48.8
Q ss_pred eEEEEEEEEc--CeeEEEEEcCCCccccCCH-HHH-HHcCchhhhhcc----c------cceecccCcceeeeEEEEeee
Q psy15482 214 VMLYINCKVN--GYPVKAFIDSGAQTTIMSL-ACA-ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIA 279 (302)
Q Consensus 214 ~mlyi~~~in--g~~v~a~vDsGaq~~i~s~-~~a-~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~ 279 (302)
..-|+++.|. ++++++++|||.-.+.+.. .|. ..|+-....|.. | -.+..|-|. +-|.+..-.+
T Consensus 137 ~~Y~~~I~IGTPpQ~~~vi~DTGSs~lWV~s~~C~s~~C~~~~~ydps~SsT~~~~~~~f~i~YgdGs--~~G~~~~Dtv 214 (451)
T 3qvc_A 137 VLSFGEAKLGDNGQKFNFLFHTASSNVWVPSIKCTSESCESKNHYDSSKSKTYEKDDTPVKLTSKAGT--ISGIFSKDLV 214 (451)
T ss_dssp EEEEEEEEETTTTEEEEEEEESSBCSEEEEBTTCCSGGGTTSCCBCGGGCTTCEEEEEEEEEECSSEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEcCCCccEEEecCCCCccccCCCCCCCCCCCcccccCCCEEEEEECCCE--EEEEEEEEEE
Confidence 3578999998 7899999999999776654 453 457654444431 1 123345444 7888888888
Q ss_pred eecccccc
Q psy15482 280 ELTNFNGD 287 (302)
Q Consensus 280 ~ig~~~~~ 287 (302)
.+|+..+.
T Consensus 215 ~igg~~v~ 222 (451)
T 3qvc_A 215 TIGKLSVP 222 (451)
T ss_dssp EETTEEEE
T ss_pred EECCEEEE
Confidence 88887653
No 208
>3b1f_A Putative prephenate dehydrogenase; enzyme, 4-hydroxyphenylpyruvate, oxidative decarboxylation pathway, tyrosine biosynthesis, oxidoreduct; HET: NAD; 2.10A {Streptococcus mutans} PDB: 3dzb_A
Probab=42.92 E-value=46 Score=29.05 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=31.1
Q ss_pred CCCHHHHHHHHhcCHHH-H---HHHHhcChhHHHHhhcCChHHHHHHHHH
Q psy15482 112 SDDPATVRQLLLDNPKE-I---ALLQQNNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 112 ~~npe~iR~~~l~NP~~-~---~~L~~~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
..+|+.+++.+.+|+.. . ..+.+.--+|.++|..+|.+.|.+.+..
T Consensus 232 ~~~p~~~~~~~~~n~~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 281 (290)
T 3b1f_A 232 ESEPGMWTSILLTNQEAVLDRIENFKQRLDEVSNLIKARDENAIWAFFNQ 281 (290)
T ss_dssp GSCHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 45788888888888743 2 3333333477788877787777777744
No 209
>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}
Probab=42.48 E-value=23 Score=29.51 Aligned_cols=26 Identities=8% Similarity=0.139 Sum_probs=21.9
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHH
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFK 28 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK 28 (302)
|.|+++. +|+.++++++|++|+.++-
T Consensus 4 ~~i~~~v--NG~~~~v~v~p~~tLLd~L 29 (160)
T 3hrd_D 4 ITINLNL--NGEARSIVTEPNKRLLDLL 29 (160)
T ss_dssp EEEEEEE--TTEEEEEEECSSSBHHHHH
T ss_pred ceEEEEE--CCEEEEEecCCCCCHHHHH
Confidence 4677766 8999999999999999974
No 210
>1pve_A HHR23B, UV excision repair protein RAD23 homolog B; XPC binding domain, solution structure, nucleotide excision repair, chaps, DNA binding protein; NMR {Homo sapiens} SCOP: a.189.1.1
Probab=42.44 E-value=16 Score=26.64 Aligned_cols=32 Identities=31% Similarity=0.571 Sum_probs=19.4
Q ss_pred HHhcCHH---HHHHHHhcChhHHHHhh----cCChHHHHH
Q psy15482 121 LLLDNPK---EIALLQQNNPRLADALL----NGSPEDFER 153 (302)
Q Consensus 121 ~~l~NP~---~~~~L~~~NPeLa~al~----~~d~e~f~~ 153 (302)
.+.++|+ +|+.+ ++||++-..+. ..||+.++.
T Consensus 8 ~Lr~~Pqf~qlR~~v-qqNP~lL~~lLqqL~~~NPqL~q~ 46 (72)
T 1pve_A 8 FLRNQPQFQQMRQII-QQNPSLLPALLQQIGRENPQLLQQ 46 (72)
T ss_dssp GGTTCTTTTTHHHHH-TTCGGGHHHHHHHHHTTCHHHHHH
T ss_pred HHHcChHHHHHHHHH-HHCHHHHHHHHHHHHhHCHHHHHH
Confidence 3456664 55555 78888776654 446665553
No 211
>4gmv_A RAS-associated and pleckstrin homology domains-CO protein 1; RA-PH, coiled-coil region, RAS-association domain, pleckstri homology domain; 2.40A {Homo sapiens} PDB: 4gn1_A
Probab=40.93 E-value=40 Score=30.63 Aligned_cols=36 Identities=11% Similarity=-0.050 Sum_probs=29.3
Q ss_pred EEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCC
Q psy15482 4 TVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAH 40 (302)
Q Consensus 4 tV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~ 40 (302)
.|-. .+|.+.+|+|++++|++||-..+..+.+++..
T Consensus 35 kv~~-~D~ss~~l~V~~~~TA~dv~~~L~~k~~~~~~ 70 (281)
T 4gmv_A 35 RVHM-SDDSSKTMMVDERQTVRQVLDNLMDKSHCGYS 70 (281)
T ss_dssp EEEE-TTSCEEEEEEETTCBHHHHHHHHHHHSCCCCC
T ss_pred EEEe-cCCCEEEEEECCCCcHHHHHHHHHHhcCCCCC
Confidence 3334 67888999999999999999999888876543
No 212
>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*
Probab=40.69 E-value=24 Score=29.32 Aligned_cols=30 Identities=13% Similarity=0.019 Sum_probs=23.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHH
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAF 30 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~ 30 (302)
|+..|+...+|+.+++++++++|+.++-..
T Consensus 1 m~~~i~~~vNG~~~~v~~~~~~tLL~~Lr~ 30 (161)
T 1rm6_C 1 MKNILRLTLNGRAREDLVPDNMLLLDYLRE 30 (161)
T ss_dssp CEEEEEEEETTEEEEEEEETTCBHHHHHHH
T ss_pred CCceEEEEECCEEEEEecCCcCcHHHHHHH
Confidence 554454445999999999999999887653
No 213
>2r2q_A Gamma-aminobutyric acid receptor-associated protein-like 1; autophagy, ubiquitin homolog, structural genomics consortium, SGC, microtubule; 1.65A {Homo sapiens} PDB: 2l8j_A 1kjt_A 1kot_A 3d32_A 3dow_A 1gnu_A 1klv_A 1km7_A
Probab=40.50 E-value=25 Score=27.30 Aligned_cols=46 Identities=13% Similarity=0.112 Sum_probs=34.0
Q ss_pred EEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCccccccc
Q psy15482 16 LDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTH 61 (302)
Q Consensus 16 leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~ 61 (302)
.-|+.+.||++|...|....++++++-..+|.+..+...+.+|+++
T Consensus 48 flVp~~~tv~~~~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~L 93 (110)
T 2r2q_A 48 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNNTIPPTSATMGQL 93 (110)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCTTSCCEEEBTTBCCCTTSBHHHH
T ss_pred EEeCCCCcHHHHHHHHHHHhcCCCCCcEEEEECCEecCccChHHHH
Confidence 3577789999999999999999987755555444564444677765
No 214
>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*
Probab=40.17 E-value=27 Score=29.24 Aligned_cols=27 Identities=11% Similarity=0.020 Sum_probs=22.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHH
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKA 29 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~ 29 (302)
|.|+++. +|+.+++++++++|+.++-.
T Consensus 4 ~~i~~~v--NG~~~~~~v~~~~tLLd~LR 30 (166)
T 1n62_A 4 AHIELTI--NGHPVEALVEPRTLLIHFIR 30 (166)
T ss_dssp EEEEEEE--TTEEEEEEECTTCBHHHHHH
T ss_pred ceEEEEE--CCEEEEEecCCCCcHHHHHH
Confidence 3566766 89999999999999998644
No 215
>2pma_A Uncharacterized protein; APC86035.2, protein LPG0085, DUF785, legionella pneumophila pneumophila STR. philadelphia 1; 1.89A {Legionella pneumophila subsp} SCOP: b.50.1.3
Probab=39.88 E-value=7.3 Score=32.28 Aligned_cols=36 Identities=17% Similarity=0.222 Sum_probs=26.4
Q ss_pred CcceeeEEEEEEEEcCeeEEEEEcCCCccccCCHHHHH
Q psy15482 209 TFGTVVMLYINCKVNGYPVKAFIDSGAQTTIMSLACAE 246 (302)
Q Consensus 209 ~f~~v~mlyi~~~ing~~v~a~vDsGaq~~i~s~~~a~ 246 (302)
.+|.+-.++++= -|.+++|=|||||.++-|+..-.+
T Consensus 4 iiG~~E~v~lp~--lg~~~~AKiDTGA~TSSLhA~dI~ 39 (146)
T 2pma_A 4 IYGYVEKATLID--QNLTLSAKLDTGAKSASLHAVNIT 39 (146)
T ss_dssp EEESEEEEEEGG--GTEEEEEEECTTCSSEEEECEEEE
T ss_pred eEeeeEEEEECC--CCCEEEEEecCCcCcceecceeEE
Confidence 345555555542 388899999999999999876443
No 216
>3w1s_C Ubiquitin-like protein ATG12; ubiquitin fold, E3-like, ATG3 binding, isopeptide bond betwe Gly186 and ATG5 Lys149, ligase; 2.60A {Saccharomyces cerevisiae S288C}
Probab=38.52 E-value=55 Score=24.70 Aligned_cols=72 Identities=7% Similarity=0.070 Sum_probs=46.5
Q ss_pred EEEEEeCCCCeEE-----EEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCccccccc--CCCCCCEEEEEEe
Q psy15482 2 KVTVSTQHTNECF-----LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTH--GIQDGDLVLLKHL 74 (302)
Q Consensus 2 qItV~~~~~g~~~-----~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~--gI~dgd~l~L~~~ 74 (302)
+|+|+.+..|..= ..-|+.+.|++.|...|....++ +..-|+-|+.-+...+.+++++ .-+++..|.+...
T Consensus 8 Kv~vrfk~~g~~P~l~k~KflV~~~~t~~~~v~~lRkrL~l--~alFlyVNn~f~Ps~d~~~~~Ly~~fk~dg~Lyv~Ys 85 (91)
T 3w1s_C 8 KIQIKFQPIGSIGQLKPSVCKISMSQSFAMVILFLKRRLKM--DHVYCYINNSFAPSPQQNIGELWMQFKTNDELIVSYC 85 (91)
T ss_dssp EEEEEEEECCC-------EEEEETTSBHHHHHHHHHHHHTC--SCCEEEETTTBCCCTTSBHHHHHHHHCBTTEEEEEEE
T ss_pred eEEEEEEecCCCCcccccEEEcCCCCCHHHHHHHHHHhhCC--ceEEEEECCccCCCcccHHHHHHHHhCCCCEEEEEEe
Confidence 5777743333322 34689999999999999999998 5566666876554333576543 1225667777665
Q ss_pred c
Q psy15482 75 G 75 (302)
Q Consensus 75 ~ 75 (302)
.
T Consensus 86 ~ 86 (91)
T 3w1s_C 86 A 86 (91)
T ss_dssp C
T ss_pred C
Confidence 3
No 217
>1eo6_A GATE-16, golgi-associated ATPase enhancer of 16 KD; ubiquitin fold, protein binding; 1.80A {Bos taurus} SCOP: d.15.1.3
Probab=37.64 E-value=29 Score=27.32 Aligned_cols=59 Identities=12% Similarity=0.174 Sum_probs=40.7
Q ss_pred EeCCCccHHHHHHHHHhhhCCCCCCeEEEECCeecCCCccccccc--CCC-CCCEEEEEEec
Q psy15482 17 DVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTH--GIQ-DGDLVLLKHLG 75 (302)
Q Consensus 17 eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~L~D~~~TL~~~--gI~-dgd~l~L~~~~ 75 (302)
-|+.+.||++|...|....++++++-..+|.+..+...+.+++++ .-+ +|..|+|....
T Consensus 50 lVp~~~tv~~f~~~iRk~l~l~~~~alfl~vn~~~p~~~~~m~~LY~~~kd~DGfLyi~Ys~ 111 (117)
T 1eo6_A 50 LVPSDITVAQFMWIIRKRIQLPSEKAIFLFVDKTVPQSSLTMGQLYEKEKDEDGFLYVAYSG 111 (117)
T ss_dssp EEETTSBHHHHHHHHHHHHTCCTTSCCEEEBTTBCCCTTSBHHHHHHHHCCTTSCEEEEEEC
T ss_pred EcCCCCCHHHHHHhhHHhhcCCCCCcEEEEECCEecCccchHHHHHHHhCCCCCEEEEEEeC
Confidence 477789999999999999999987755556444564444677765 112 24567776654
No 218
>2c7h_A RBBP6, retinoblastoma-binding protein 6, isoform 3; P53-associated, mRNA processing, splicing-associated, oesophageal cancer; NMR {Homo sapiens}
Probab=37.53 E-value=1.3e+02 Score=22.54 Aligned_cols=43 Identities=9% Similarity=0.026 Sum_probs=31.2
Q ss_pred EEEEeCCCCeEEEEEeCC-CccHHHHHHHHHhhhCCCCCCeEEE
Q psy15482 3 VTVSTQHTNECFLLDVSE-DLELENFKAFCEVQSGYPAHEIAIE 45 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~-~~TV~dLK~~Ie~e~gIp~~~Q~Li 45 (302)
|+.+.++.-+..+|.++. ..+|.|||..|-.+.++-..+..|.
T Consensus 9 V~YKFkS~k~~~~v~fdG~~Isv~dLKr~I~~~~kl~~~dfDL~ 52 (86)
T 2c7h_A 9 VHYKFSSKLNYDTVTFDGLHISLCDLKKQIMGREKLKAADCDLQ 52 (86)
T ss_dssp EEEEETTCSSEEEEEESSSEEEHHHHHHHHHHHHTCCTTTEEEE
T ss_pred EEEEEeecCCcceEEEcCCEEEHHHHHHHHHHHhCCCCCcccEE
Confidence 555664555566788874 6799999999998888766555553
No 219
>1oqy_A HHR23A, UV excision repair protein RAD23 homolog A; DNA repair, proteasome-mediated degradation, protein- protein interaction, replication; NMR {Homo sapiens} SCOP: a.5.2.1 a.5.2.1 a.189.1.1 d.15.1.1 PDB: 1qze_A 1tp4_A
Probab=37.11 E-value=67 Score=30.25 Aligned_cols=39 Identities=31% Similarity=0.538 Sum_probs=28.0
Q ss_pred HHHHHHhcCHHHHHH----HHhcChhHHHHhhcCChHHHHHHHH
Q psy15482 117 TVRQLLLDNPKEIAL----LQQNNPRLADALLNGSPEDFERILR 156 (302)
Q Consensus 117 ~iR~~~l~NP~~~~~----L~~~NPeLa~al~~~d~e~f~~~lr 156 (302)
.||+++..||+++.. |.++||+|++.|. .|++.|-+++.
T Consensus 248 ~lR~~vq~nP~~l~~~lq~l~~~nP~l~~~I~-~n~~~Fl~~l~ 290 (368)
T 1oqy_A 248 NMRQVIQQNPALLPALLQQLGQENPQLLQQIS-RHQEQFIQMLN 290 (368)
T ss_dssp HHHHSTTTCTTHHHHHHTTTTTTCHHHHHHHH-HHHHHHHHHHH
T ss_pred HHHHHHHhChHHHHHHHHHHHhhCHHHHHHHH-HCHHHHHHHHc
Confidence 567778888876544 4557888888885 47788877774
No 220
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1
Probab=36.84 E-value=62 Score=33.10 Aligned_cols=61 Identities=15% Similarity=0.152 Sum_probs=41.3
Q ss_pred EEEEEeCCCccHHHHHHHHHhhh--CCCCCC--------eEEEECCe--ec-----CCCcccccccCCCCCCEEEEEE
Q psy15482 13 CFLLDVSEDLELENFKAFCEVQS--GYPAHE--------IAIEFQGV--LL-----QDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 13 ~~~leV~~~~TV~dLK~~Ie~e~--gIp~~~--------Q~Li~~Gk--~L-----~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
...++++++.|+.+|-..+..+. ++.... ..++|... .| .+-+++|+++||++|+.|.+.-
T Consensus 713 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ly~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~~~ 790 (805)
T 2nvu_B 713 PQNIQFSPSAKLQEVLDYLTNSASLQMKSPAITATLEGKNRTLYLQSVTSIEERTRPNLSKTLKELGLVDGQELAVAD 790 (805)
T ss_dssp CEEEEECTTSBHHHHHHHHHHCTTTCCSSCEEEEEETTEEEEEECCSSHHHHHHHGGGGGSBTTTTTCCTTCEEEEEC
T ss_pred eEEEEECCcChHHHHHHHHHhhhccCcccceEEEEccCCCcEEEecCccchhhhhHhhhcCCHHHcCCCCCCEEEEEc
Confidence 34678888899999988777753 333211 35666532 11 1224789999999999998864
No 221
>2bkf_A Zinc-finger protein NBR1 (NEXT to breast cancer 1; PB1 domain, interaction domain, Z finger; 1.56A {Homo sapiens} SCOP: d.15.2.2 PDB: 2g4s_A
Probab=35.83 E-value=85 Score=23.61 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=33.1
Q ss_pred EEEEeCCCCeEEEEEeCC--CccHHHHHHHHHhhhCCCCCCeEEEE
Q psy15482 3 VTVSTQHTNECFLLDVSE--DLELENFKAFCEVQSGYPAHEIAIEF 46 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~--~~TV~dLK~~Ie~e~gIp~~~Q~Li~ 46 (302)
++++..-.|+++.+-|+. +.|.++|.+++...+|++ ...+-|
T Consensus 7 v~lkV~f~ge~~rf~vs~~~~~tweel~~mvk~~f~L~--~~~ikY 50 (87)
T 2bkf_A 7 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 50 (87)
T ss_dssp EEEEEEETTEEEEEEESCGGGCCHHHHHHHHHHHHTCS--SEEEEE
T ss_pred EEEEEEEcCCeeEEEeccCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 455543589999988876 999999999999999997 445555
No 222
>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*
Probab=35.75 E-value=35 Score=28.45 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=21.4
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHH
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKA 29 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~ 29 (302)
.|+++. +|+.+++++++++|+.++-.
T Consensus 5 ~i~~~v--NG~~~~~~v~~~~tLLd~LR 30 (163)
T 1ffv_A 5 IITVNV--NGKAQEKAVEPRTLLIHFLR 30 (163)
T ss_dssp EEEEEE--TTEEEEEEECTTCBHHHHHH
T ss_pred eEEEEE--CCEEEEEecCCCCcHHHHHH
Confidence 566665 89999999999999998644
No 223
>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2
Probab=35.43 E-value=35 Score=28.29 Aligned_cols=27 Identities=11% Similarity=0.207 Sum_probs=22.1
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHH
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKA 29 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~ 29 (302)
|.|+|+. +|+.+++++++++||.++-.
T Consensus 10 m~i~~~i--ng~~~~~~v~~~~tlL~~Lr 36 (168)
T 1t3q_A 10 MRISATI--NGKPRVFYVEPRMHLADALR 36 (168)
T ss_dssp EEEEEEE--TTEEEEEEECTTSBHHHHHH
T ss_pred ceEEEEE--CCEEEEEecCCCCcHHHHHH
Confidence 4566666 89999999999999988654
No 224
>3m95_A Autophagy related protein ATG8; alpha slash beta, receptor, transport protein; 2.40A {Bombyx mori} SCOP: d.15.1.3
Probab=35.38 E-value=34 Score=27.47 Aligned_cols=58 Identities=10% Similarity=0.119 Sum_probs=40.4
Q ss_pred EEeCCCccHHHHHHHHHhhhCCCCCCeEEEE-CCeecCCCccccccc----CCCCCCEEEEEEec
Q psy15482 16 LDVSEDLELENFKAFCEVQSGYPAHEIAIEF-QGVLLQDNKKTLKTH----GIQDGDLVLLKHLG 75 (302)
Q Consensus 16 leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-~Gk~L~D~~~TL~~~----gI~dgd~l~L~~~~ 75 (302)
.-|+.+.||++|...|.....+++++-..+| |+ .+...+.|++++ +=. |..|.|....
T Consensus 57 flVp~~~tv~qf~~~IRkrl~L~~~~alFl~Vnn-~lPs~s~~m~~lY~~~kde-DGfLY~~Ys~ 119 (125)
T 3m95_A 57 YLVPSDLTVGQFYFLIRKRIHLRPEDALFFFVNN-VIPPTSATMGSLYQEHHDE-DFFLYIAFSD 119 (125)
T ss_dssp EEEETTSBHHHHHHHHHHHTTCCTTSCCEEEBTT-BCCCTTSBHHHHHHHHCCT-TSCEEEEEES
T ss_pred EEcCCCCEeeeehhhhHhhcCCCccccEEEEECC-ccCCccchHHHHHHHcCCC-CCeEEEEecC
Confidence 3588899999999999999999987755555 55 564444677654 323 4466666543
No 225
>2x0b_A Renin; hydrolase-hormone complex, hydrolase hormone complex, vasoconstrictor, glycoprotein, hypertension, serpins; 4.33A {Homo sapiens}
Probab=34.62 E-value=34 Score=31.93 Aligned_cols=72 Identities=15% Similarity=0.272 Sum_probs=48.2
Q ss_pred eEEEEEEEEc--CeeEEEEEcCCCccccC-CHHHH---HHcCchhhhhcc----c------cceecccCcceeeeEEEEe
Q psy15482 214 VMLYINCKVN--GYPVKAFIDSGAQTTIM-SLACA---ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMA 277 (302)
Q Consensus 214 ~mlyi~~~in--g~~v~a~vDsGaq~~i~-s~~~a---~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~ 277 (302)
..-|+++.|. ++++++++|||.-..-+ +..|. ..|......|.. | -.+..|-|. +-|.+-.-
T Consensus 61 ~~Y~~~I~IGTP~Q~f~vi~DTGSs~lWV~s~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D 138 (383)
T 2x0b_A 61 TQYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQD 138 (383)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEE
T ss_pred CEEEEEEEECCCCcEEEEEEeCCCCCeEEeccCCCCCcccccCCCCCCCCCCCcEEECCcEEEEEcCCcc--EEEEEEee
Confidence 3578899998 68899999999987765 44564 467544344321 1 123455554 67888888
Q ss_pred eeeecccccc
Q psy15482 278 IAELTNFNGD 287 (302)
Q Consensus 278 ~~~ig~~~~~ 287 (302)
.+.||++.+.
T Consensus 139 tv~ig~~~v~ 148 (383)
T 2x0b_A 139 IITVGGITVT 148 (383)
T ss_dssp EEEETTEEEE
T ss_pred EEEEcCceEE
Confidence 8888876543
No 226
>1yg9_A Aspartic protease BLA G 2; allegren, hydrolase, allergen; HET: NAG; 1.30A {Blattella germanica} PDB: 2nr6_A* 3liz_A*
Probab=34.41 E-value=30 Score=31.27 Aligned_cols=71 Identities=11% Similarity=0.089 Sum_probs=46.1
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccC-CHHHH-HHc--Cchhhhhcc---c------cceecccCcceeeeEEEEeeeee
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIM-SLACA-ERV--NIMRLLDTR---W------AGIAKGVGVQKILGRIHMAIAEL 281 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~-s~~~a-~~~--gl~~~~d~~---~------~~~a~gvg~~~i~G~i~~~~~~i 281 (302)
.-|+++.|.++++++++|||.-.+.+ +..|. ..| .-....|.. | -.+..|-|. +.|.+..-.+.|
T Consensus 18 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~~~y~~~~ST~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv~i 95 (330)
T 1yg9_A 18 QYAGITKIGNQNFLTVFDSTSCNVVVASQECVGGACVCPNLQKYEKLKPKYISDGNVQVKFFDTGS--AVGRGIEDSLTI 95 (330)
T ss_dssp TSEEEEEETTEEEEEEEETTCCCEEEECTTCCSGGGGSTTCCCCCCSSCEEEEEEEEEEEETTTEE--EEEEEEEEEEEE
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCCccCcccccCccCCCCCceEECCCEEEEEECCce--EEEEEEEEEEEE
Confidence 45789999999999999999987765 45564 357 443344431 1 122334443 377777777888
Q ss_pred cccccc
Q psy15482 282 TNFNGD 287 (302)
Q Consensus 282 g~~~~~ 287 (302)
|++.+.
T Consensus 96 g~~~~~ 101 (330)
T 1yg9_A 96 SQLTTS 101 (330)
T ss_dssp TTEEEE
T ss_pred CCEEEc
Confidence 876543
No 227
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=34.27 E-value=27 Score=31.40 Aligned_cols=70 Identities=14% Similarity=0.278 Sum_probs=44.6
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH-HHcCchhhhhcc----c------cceecccCcceeeeEEEEeeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA-ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIAE 280 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a-~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~~ 280 (302)
.-|+++.|- ++++++++|||...+.+. ..|. ..|+-....|.. | -.+..|-|. +.|.+-.-.+.
T Consensus 15 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 92 (323)
T 3cms_A 15 QYFGKIYLGTPPQEFTVLFDTGSSDFWVPSIYCKSNACKNHQRFDPRKSSTFQNLGKPLSIHYGTGS--MQGILGYDTVT 92 (323)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCccceEEcCCCCCcccccCCCCCCCccCCCeEECCcEEEEEeCCCC--eEEEEEEEEEE
Confidence 467889998 689999999999887664 4452 556533333321 1 123344443 56777777777
Q ss_pred eccccc
Q psy15482 281 LTNFNG 286 (302)
Q Consensus 281 ig~~~~ 286 (302)
||+..+
T Consensus 93 ig~~~~ 98 (323)
T 3cms_A 93 VSNIVD 98 (323)
T ss_dssp ETTEEE
T ss_pred ECCeEE
Confidence 777654
No 228
>1bxo_A Protein (penicillopepsin); hydrolase, phosphonate inhibitors, macrocycle; HET: MAN PP7; 0.95A {Penicillium janthinellum} SCOP: b.50.1.2 PDB: 1apu_E* 1apv_E* 1apw_E* 1apt_E* 1bxq_A* 1ppk_E* 1ppl_E* 1ppm_E* 2wea_A* 2web_A* 2wec_A* 2wed_A* 3app_A
Probab=32.06 E-value=37 Score=30.52 Aligned_cols=72 Identities=10% Similarity=0.099 Sum_probs=43.8
Q ss_pred EEEEEEEEcCeeEEEEEcCCCccccCCH-HHHH-HcCchhhhhcc---------ccceecccCcceeeeEEEEeeeeecc
Q psy15482 215 MLYINCKVNGYPVKAFIDSGAQTTIMSL-ACAE-RVNIMRLLDTR---------WAGIAKGVGVQKILGRIHMAIAELTN 283 (302)
Q Consensus 215 mlyi~~~ing~~v~a~vDsGaq~~i~s~-~~a~-~~gl~~~~d~~---------~~~~a~gvg~~~i~G~i~~~~~~ig~ 283 (302)
.-|+++.|.++++++++|||.-.+.+.. .|.. .|.-....|.. --.+..|-|+ .+-|.+..-.+.||+
T Consensus 16 ~Y~~~i~iG~Q~~~v~~DTGSs~lWv~~~~C~~~~c~~~~~y~~~~Ss~~~~~~~~~i~Yg~Gs-~~~G~~~~D~v~ig~ 94 (323)
T 1bxo_A 16 EYITPVTIGGTTLNLNFDTGSADLWVFSTELPASQQSGHSVYNPSATGKELSGYTWSISYGDGS-SASGNVFTDSVTVGG 94 (323)
T ss_dssp CEEEEEEETTEEEEEEEETTCCCEEECBTTSCHHHHTTSCCBCHHHHCEEEEEEEEEEECTTSC-EEEEEEEEEEEEETT
T ss_pred EEEEEEEECCEEEEEEEeCCCcceEEecCCCCchhccCCCCCCcccCCcccCCCeEEEEeCCCC-eEEEEEEEEEEEECC
Confidence 4678999999999999999999886654 3421 13222222210 1123334332 356777777788887
Q ss_pred cccc
Q psy15482 284 FNGD 287 (302)
Q Consensus 284 ~~~~ 287 (302)
+.+.
T Consensus 95 ~~v~ 98 (323)
T 1bxo_A 95 VTAH 98 (323)
T ss_dssp EEEE
T ss_pred EEEC
Confidence 6543
No 229
>2llv_A Heat shock protein STI1; DP domain, alpha helix, chaperone; NMR {Saccharomyces cerevisiae}
Probab=31.62 E-value=11 Score=27.11 Aligned_cols=28 Identities=25% Similarity=0.510 Sum_probs=17.1
Q ss_pred cCHHHHHHHHhcChhHHHHhhcCChHHHHHHH
Q psy15482 124 DNPKEIALLQQNNPRLADALLNGSPEDFERIL 155 (302)
Q Consensus 124 ~NP~~~~~L~~~NPeLa~al~~~d~e~f~~~l 155 (302)
++|.+.+.| ..||+++.++ .|| +|.+.+
T Consensus 11 ~~p~~~~kl-~~dP~t~~~~--~DP-~~~~~l 38 (71)
T 2llv_A 11 ADPNLIENL-KKNPKTSEMM--KDP-QLVAKL 38 (71)
T ss_dssp HSSSCHHHH-HHSSTTHHHH--HSC-THHHHH
T ss_pred cChHHHHHH-HcChHHHHHh--cCH-HHHHHH
Confidence 345555555 6777777777 566 444555
No 230
>4a6q_A Histone deacetylase complex subunit SAP18; transcription, splicing, RNA metabolism, ubiquitin-like; HET: MSE; 1.50A {Mus musculus} PDB: 4a90_A* 2hde_A 4a8x_C
Probab=31.55 E-value=49 Score=27.23 Aligned_cols=62 Identities=18% Similarity=0.168 Sum_probs=43.4
Q ss_pred EEEEeCCCccHHHHHHHHHhhhC-CCCC----CeEE-----------------EECCeecCCCcccccccCCCCCCEEEE
Q psy15482 14 FLLDVSEDLELENFKAFCEVQSG-YPAH----EIAI-----------------EFQGVLLQDNKKTLKTHGIQDGDLVLL 71 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~g-Ip~~----~Q~L-----------------i~~Gk~L~D~~~TL~~~gI~dgd~l~L 71 (302)
+.|-...|.|+.+|-.+|....- .+.- ..++ ++.|+.-.|+++||.+++..-||.|.+
T Consensus 56 lQIYTW~daTLrEL~~Lvk~~~p~ar~~gtrl~F~~VypD~r~~ry~~kdlGsv~~g~~~~dd~kTL~~~rF~iGDyidv 135 (143)
T 4a6q_A 56 LQIYTWMDATLKELTSLVKEVYPEARKKGTHFNFAIVFMDLKRPGYRVKEIGSTMSGRKGTDDSMTLQSQKFQIGDYLDI 135 (143)
T ss_dssp EEEEECTTCBHHHHHHHHHHHCGGGGSTTCEEEEEEEEECSSSSSEEEEEEEEEETTBCCTTTTCBTGGGTCCTTCEEEE
T ss_pred eEEeeCCCCCHHHHHHHHHHhCccccCCCCEEEEEEEcccCCCCceeeccCCEEecCCCCCcccccHHHCCCcCCCEEEE
Confidence 56778899999999999987631 0100 1122 234555456679999999999999998
Q ss_pred EEec
Q psy15482 72 KHLG 75 (302)
Q Consensus 72 ~~~~ 75 (302)
...+
T Consensus 136 aI~p 139 (143)
T 4a6q_A 136 AITP 139 (143)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 7764
No 231
>1wgy_A RAP guanine nucleotide exchange factor 5; ubiquitin fold, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Homo sapiens} SCOP: d.15.1.5
Probab=31.30 E-value=1.6e+02 Score=22.82 Aligned_cols=66 Identities=9% Similarity=0.134 Sum_probs=46.8
Q ss_pred CCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEE---ECCeec--CCCcccccccCCCCCCEEEEEEecC
Q psy15482 10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIE---FQGVLL--QDNKKTLKTHGIQDGDLVLLKHLGS 76 (302)
Q Consensus 10 ~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li---~~Gk~L--~D~~~TL~~~gI~dgd~l~L~~~~~ 76 (302)
+..-+++-+..+.|+.+++..+..+.+...+.+.|. ++|-.+ +++ ..--.-.+.-+..|++..+-.
T Consensus 18 Dhsy~tvr~~v~~sa~eIl~~va~kl~~~~e~l~Lv~v~ssGEk~~lqp~-d~si~tsL~~NgRLfvc~kd~ 88 (104)
T 1wgy_A 18 EHSYVSVKAKVSSIAQEILKVVAEKIQYAEEDLALVAITFSGEKHELQPN-DLVISKSLEASGRIYVYRKDL 88 (104)
T ss_dssp SSCEEEECCCTTCBSHHHHHHHHHHHTSCGGGEEEEEECSSCCCCBCCTT-SBSSCCSSCSSCEEEEEECCS
T ss_pred cCceEEEEEeccchHHHHHHHHHHHhcCCccceEEEEEccCCcEeecCCc-ceEEEeeccccceEEEeehHh
Confidence 445568899999999999999999999887788887 466443 443 222222344467888877643
No 232
>1b5f_A Protein (cardosin A); hydrolase, aspartic proteinase; HET: NAG FUC BMA MAN; 1.72A {Cynara cardunculus} SCOP: b.50.1.2
Probab=31.23 E-value=33 Score=29.58 Aligned_cols=28 Identities=21% Similarity=0.219 Sum_probs=23.6
Q ss_pred EEEcCeeE-------EEEEcCCCccccCCHHHHHH
Q psy15482 220 CKVNGYPV-------KAFIDSGAQTTIMSLACAER 247 (302)
Q Consensus 220 ~~ing~~v-------~a~vDsGaq~~i~s~~~a~~ 247 (302)
+.|+|..+ .|+||||.-.+.++.+..+.
T Consensus 197 i~v~~~~~~~~~~~~~aiiDTGTt~~~lP~~~~~~ 231 (239)
T 1b5f_A 197 VLIGDKSTGFCAPGCQAFADSGTSLLSGPTAIVTQ 231 (239)
T ss_dssp EEETTEECCTTTTCEEEEECTTCSSEEECHHHHHH
T ss_pred EEECCEEecccCCCCEEEEecCcchhhCCHHHHHH
Confidence 56888764 69999999999999987765
No 233
>3k1w_A Renin; protease, alternative splicing, aspartyl protease, cleavage on PAIR of basic residues, disease mutation, disulfide bond, glycoprotein; HET: BFX NDG HSQ; 1.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 3d91_A* 3g70_A* 3g6z_A* 3own_A* 2iko_A* 1bbs_A* 1rne_A* 2bkt_A* 2bks_A* 2iku_A* 2il2_A* 2ren_A* 2v0z_C* 2v10_C* 2v11_C* 2v12_C* 2v13_A* 2v16_C* 3g72_A* 3oot_A* ...
Probab=31.05 E-value=28 Score=31.32 Aligned_cols=70 Identities=14% Similarity=0.271 Sum_probs=45.8
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH---HHcCchhhhhcc----c------cceecccCcceeeeEEEEee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA---ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAI 278 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a---~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~ 278 (302)
.-|+++.|. ++++++++|||.-.+.+. ..|. ..|+-....|.. | -.+..|-|. +-|.+..-.
T Consensus 19 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~ 96 (341)
T 3k1w_A 19 QYYGEIGIGTPPQTFKVVFDTGSSNVWVPSSKCSRLYTACVYHKLFDASDSSSYKHNGTELTLRYSTGT--VSGFLSQDI 96 (341)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTSCTTCHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCcceEEccCCCCCCCCcccCCCCCCCCcCcCeeECCCEEEEEECCcE--EEEEEEEEE
Confidence 468999998 599999999999877664 4443 356433333321 1 123345443 678888888
Q ss_pred eeeccccc
Q psy15482 279 AELTNFNG 286 (302)
Q Consensus 279 ~~ig~~~~ 286 (302)
+.||++.+
T Consensus 97 v~ig~~~v 104 (341)
T 3k1w_A 97 ITVGGITV 104 (341)
T ss_dssp EEETTEEE
T ss_pred EEECCcee
Confidence 88887665
No 234
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=30.88 E-value=34 Score=31.13 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=45.5
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH-HHcCchhhhhcc----c------cceecccCcceeeeEEEEeeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA-ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIAE 280 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a-~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~~ 280 (302)
.-|+++.|. ++++++++|||.-.+.+. ..|. ..|+-....|.. | -.+..|-|. +-|.+-.-.+.
T Consensus 24 ~Y~~~i~iGtP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 101 (351)
T 1tzs_A 24 EYFGTISIGSPPQNFTVIFDTGSSNLWVPSVYCTSPACKTHSRFQPSQSSTYSQPGQSFSIQYGTGS--LSGIIGADQVS 101 (351)
T ss_dssp CCCEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSGGGTTSCCBCGGGCTTCBCCSCEEEEESSSCE--EEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCccccCCCCcCCcccCcceEECCCEEEEEeCCCC--eEEEEEEeEEE
Confidence 467899998 689999999999887664 4454 357644334321 1 123345443 56877777788
Q ss_pred eccccc
Q psy15482 281 LTNFNG 286 (302)
Q Consensus 281 ig~~~~ 286 (302)
||+..+
T Consensus 102 ig~~~~ 107 (351)
T 1tzs_A 102 VEGLTV 107 (351)
T ss_dssp ETTEEE
T ss_pred ECCeEE
Confidence 877654
No 235
>3rui_B Autophagy-related protein 8; autophagosome formation, non-canonical E1, ATP BI UBL, ATG8, ATG12, ATG10, ATG3, UBL activation, thiolation; 1.91A {Saccharomyces cerevisiae} SCOP: d.15.1.3 PDB: 2kq7_A 2zpn_A 3vxw_A 2kwc_A 2li5_A 3vh3_B 3vh4_B*
Probab=30.87 E-value=52 Score=25.97 Aligned_cols=57 Identities=12% Similarity=0.138 Sum_probs=38.7
Q ss_pred EeCCCccHHHHHHHHHhhhCCCCCCeEEEE-CCeecCCCccccccc--CCC-CCCEEEEEEe
Q psy15482 17 DVSEDLELENFKAFCEVQSGYPAHEIAIEF-QGVLLQDNKKTLKTH--GIQ-DGDLVLLKHL 74 (302)
Q Consensus 17 eV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-~Gk~L~D~~~TL~~~--gI~-dgd~l~L~~~ 74 (302)
-|+.+.||++|...|.....+++++-..+| |+ .+...+.+++++ .-+ +|..|+|...
T Consensus 52 lVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~-~~p~~~~~m~~lY~~~kdeDGfLyv~Ys 112 (118)
T 3rui_B 52 LVPADLTVGQFVYVIRKRIMLPPEKAIFIFVND-TLPPTAALMSAIYQEHKDKDGFLYVTYS 112 (118)
T ss_dssp EEETTSBHHHHHHHHHHHTTCCTTCCEEEEBTT-BCCCTTSBHHHHHHHHCCTTSCEEEEEE
T ss_pred EcCCCCCHHHHHHHHHHHhCcCCCccEEEEECC-ccCCccchHHHHHHHcCCCCCeEEEEEe
Confidence 388999999999999999999987655555 55 454434676654 112 2336666554
No 236
>3r8s_T 50S ribosomal protein L23; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 3fik_T 3j19_T 2wwq_T 3oat_T* 3oas_T* 3ofd_T 3ofc_T 3ofr_T* 3ofz_T* 3og0_T 3ofq_T 3r8t_T 2j28_T 3e1b_M 3e1d_M 3iy9_T 3i1n_T 1p85_R 1p86_R 1vs8_T ...
Probab=30.22 E-value=58 Score=24.65 Aligned_cols=40 Identities=15% Similarity=0.214 Sum_probs=34.1
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCe-EEEECCee
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQSGYPAHEI-AIEFQGVL 50 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q-~Li~~Gk~ 50 (302)
...+++.|+++.+=-++|..|+.-+|+.+..- .+...|+.
T Consensus 27 ~n~~~F~V~~~AnK~eIK~AVE~lf~VkV~~VnT~~~~gK~ 67 (93)
T 3r8s_T 27 SNTIVLKVAKDATKAEIKAAVQKLFEVEVEVVNTLVVKGKV 67 (93)
T ss_dssp TSEEEEEECSSCCHHHHHHHHHHHSCCCCCEEEEEEECCCB
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHcCCceEEEEEEEeCCce
Confidence 46899999999999999999999999998765 45577764
No 237
>3hk0_A Growth factor receptor-bound protein 10; GRB10, RA, PH, RAS-associating, pleckstrin-homology, adapter phosphoprotein, SH2 domain; 2.60A {Homo sapiens}
Probab=29.80 E-value=74 Score=28.37 Aligned_cols=51 Identities=12% Similarity=0.104 Sum_probs=32.9
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEEC-------CeecCCC
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQ-------GVLLQDN 54 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~-------Gk~L~D~ 54 (302)
|+|-. .+|...+|.|++++|++||-.++..+.+++.+.--.++. -|+|.|.
T Consensus 11 vkv~~-~d~ss~~l~V~~~mta~ev~~~l~~k~~~~~~~~W~l~E~~~~l~lER~ledh 68 (256)
T 3hk0_A 11 VKVFS-EDGTSKVVEILADMTARDLCQLLVYKSHSVDDNSWTLVEHHPHLGLERCLEDH 68 (256)
T ss_dssp EEEEE-TTSCEEEEEECTTCBHHHHHHHHHCCC-------EEEEEEETTTTEEEECCTT
T ss_pred EEEEe-cCCcEEEEEECCCCCHHHHHHHHHHhcCCCCCCCEEEEEECCCcccccccccc
Confidence 44555 678899999999999999999998887765433322221 4666665
No 238
>4gdk_A Ubiquitin-like protein ATG12; protein-protein conjugate, protein-protein complex, ubiquiti protein, E3 ligase, ubiquitin-like fold; 2.70A {Homo sapiens} PDB: 4gdl_A
Probab=29.54 E-value=53 Score=24.69 Aligned_cols=58 Identities=12% Similarity=0.126 Sum_probs=40.8
Q ss_pred EEeCCCccHHHHHHHHHhhhCCCCCCeEEEE-CCeecCCCcccccc----cCCCCCCEEEEEEec
Q psy15482 16 LDVSEDLELENFKAFCEVQSGYPAHEIAIEF-QGVLLQDNKKTLKT----HGIQDGDLVLLKHLG 75 (302)
Q Consensus 16 leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~-~Gk~L~D~~~TL~~----~gI~dgd~l~L~~~~ 75 (302)
.-|+.+.|+++|...|....++++++-..+| |+..+...+.++++ ++ ++..|.+....
T Consensus 24 flVp~~~tv~~~~~~lRkrL~l~~~~alFlyVnn~~~P~~d~~~~~Ly~~~k--~DGfLyv~Ys~ 86 (91)
T 4gdk_A 24 WAVERTRTIQGLIDFIKKFLKLVASEQLFIYVNQSFAPSPDQEVGTLYECFG--SDGKLVLHYCK 86 (91)
T ss_dssp EEEETTCBHHHHHHHHHHHTTCCSSSCCEEEETTTBCCCTTCBHHHHHHHHC--BTTEEEEEEES
T ss_pred EEcCCCCCHHHHHHHHHHHhCCCCCCeEEEEECCccCCChhhHHHHHHHHhC--CCCEEEEEEeC
Confidence 5688899999999999999999887654444 66555432356654 46 45666666543
No 239
>1wj6_A KIAA0049 protein, RSGI RUH-024; PB1 domain, protein binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=29.48 E-value=90 Score=24.13 Aligned_cols=42 Identities=24% Similarity=0.321 Sum_probs=32.3
Q ss_pred EEEEeCCCCeEEEEEeCC--CccHHHHHHHHHhhhCCCCCCeEEEE
Q psy15482 3 VTVSTQHTNECFLLDVSE--DLELENFKAFCEVQSGYPAHEIAIEF 46 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~--~~TV~dLK~~Ie~e~gIp~~~Q~Li~ 46 (302)
++++..-.|+++.+-|+. +.|.++|.+++...+|++ ...|-|
T Consensus 15 v~lkV~f~ge~~rF~Vs~~~~~tweel~~mvk~~f~L~--~~~IkY 58 (101)
T 1wj6_A 15 VTLNVTFKNEIQSFLVSDPENTTWADIEAMVKVSFDLN--TIQIKY 58 (101)
T ss_dssp EEEEEEETTEEEEEEESCTTTSCHHHHHHHHHHHHCCS--SBCCEE
T ss_pred EEEEEEEcCCeeEEEecCCCCCCHHHHHHHHHHHcCCC--ceEEEE
Confidence 455543578898887865 999999999999999997 334444
No 240
>2k7r_A Primosomal protein DNAI; DNAI N-terminal domain, helicase-loading protein, ATP- binding, DNA replication, nucleotide-binding, primosome; NMR {Bacillus subtilis}
Probab=29.41 E-value=30 Score=26.49 Aligned_cols=39 Identities=10% Similarity=0.269 Sum_probs=26.7
Q ss_pred HHHHHHHhcCHHHHHHHHhcCh-hHHHHhhcCChHHHHHHH
Q psy15482 116 ATVRQLLLDNPKEIALLQQNNP-RLADALLNGSPEDFERIL 155 (302)
Q Consensus 116 e~iR~~~l~NP~~~~~L~~~NP-eLa~al~~~d~e~f~~~l 155 (302)
+.+.+.++++|..++-| +.|| +|.+..-..+...|.+.+
T Consensus 22 ~~~~~~vl~dP~V~~Fl-~~h~~~l~~~~I~~s~~kL~ey~ 61 (106)
T 2k7r_A 22 EQMKEKVMKDQDVQAFL-KENEEVIDQKMIEKSLNKLYEYI 61 (106)
T ss_dssp HHHHHHHTTCHHHHHHH-HHSTTTCCHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHH-HHChhhCCHHHHHhhHHHHHHHH
Confidence 34777889999988876 6777 576555445566666655
No 241
>4aa9_A Chymosin; hydrolase, aspartic peptidase, rennet; HET: NAG; 1.60A {Camelus dromedarius} PDB: 4aa8_A 1czi_E* 1cms_A 4cms_A 3cms_A
Probab=29.24 E-value=35 Score=30.47 Aligned_cols=71 Identities=14% Similarity=0.229 Sum_probs=44.4
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCH-HHH-HHcCchhhhhcc----c------cceecccCcceeeeEEEEeeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSL-ACA-ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIAE 280 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~-~~a-~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~~ 280 (302)
.-|+++.|. ++++++++|||.-.+.+.. .|. ..|.-....|.. | -.+..|-|. +.|.+..-.+.
T Consensus 12 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~gs--~~G~~~~D~v~ 89 (320)
T 4aa9_A 12 QYFGKIYIGTPPQEFTVVFDTGSSDLWVPSIYCKSNVCKNHHRFDPRKSSTFRNLGKPLSIHYGTGS--MEGFLGYDTVT 89 (320)
T ss_dssp CCEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCCceEEcCCCCCccccCCCCCCCCCCCcCeEcCCcEEEEEECCcE--EEEEEEEEEEE
Confidence 468899998 6899999999998777643 332 134322233221 1 123344443 57888888888
Q ss_pred ecccccc
Q psy15482 281 LTNFNGD 287 (302)
Q Consensus 281 ig~~~~~ 287 (302)
||+..+.
T Consensus 90 ig~~~v~ 96 (320)
T 4aa9_A 90 VSNIVDP 96 (320)
T ss_dssp ETTEEEE
T ss_pred ECCEeec
Confidence 8876553
No 242
>1qdm_A Prophytepsin; aspartic proteinases, saposin-like domain, zymogen structure, hydrolase; 2.30A {Hordeum vulgare} SCOP: a.64.1.2 b.50.1.2
Probab=29.19 E-value=58 Score=31.40 Aligned_cols=72 Identities=15% Similarity=0.202 Sum_probs=47.6
Q ss_pred eEEEEEEEEc--CeeEEEEEcCCCccccC-CHHHH--HHcCchhhhhcc----c------cceecccCcceeeeEEEEee
Q psy15482 214 VMLYINCKVN--GYPVKAFIDSGAQTTIM-SLACA--ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAI 278 (302)
Q Consensus 214 ~mlyi~~~in--g~~v~a~vDsGaq~~i~-s~~~a--~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~ 278 (302)
..-|+++.|. ++++++++|||...+.+ +..|. ..|+.....|.. | -.+..|-|. +-|.+..-.
T Consensus 52 ~~Y~~~i~IGTP~Q~~~v~~DTGSs~lWV~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dt 129 (478)
T 1qdm_A 52 AQYFGEIGVGTPPQKFTVIFDTGSSNLWVPSAKCYFSIACYLHSRYKAGASSTYKKNGKPAAIQYGTGS--IAGYFSEDS 129 (478)
T ss_dssp CCEEEEEEETTTTEEEEEEEETTCCCCEEEBTTCCSCGGGGGSCCBCGGGCTTCBCCCCEEEEEETTEE--EEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEcCCCcceEEecCCCCCCccccCCCCCCcccCCCeeeCCcEEEEEcCCCC--eEEEEEEEE
Confidence 3568899998 78999999999988766 44563 456544334321 1 113345443 568888888
Q ss_pred eeecccccc
Q psy15482 279 AELTNFNGD 287 (302)
Q Consensus 279 ~~ig~~~~~ 287 (302)
+.||++.+.
T Consensus 130 v~ig~~~v~ 138 (478)
T 1qdm_A 130 VTVGDLVVK 138 (478)
T ss_dssp EEETTEEEE
T ss_pred EEECCeEEC
Confidence 888876553
No 243
>1pqs_A Cell division control protein 24; alpha and beta protein, cell cycle; NMR {Saccharomyces cerevisiae} SCOP: d.15.2.2 PDB: 1tz1_A
Probab=29.18 E-value=47 Score=24.29 Aligned_cols=27 Identities=15% Similarity=0.147 Sum_probs=24.5
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhCCC
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSGYP 38 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp 38 (302)
..++|-|+++.+..+|..+|..++++.
T Consensus 2 D~~~i~V~~~i~f~~L~~kI~~kl~~~ 28 (77)
T 1pqs_A 2 EIFTLLVEKVWNFDDLIMAINSKISNT 28 (77)
T ss_dssp CEEEEECTTCCCSHHHHHHHHHHTTTT
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHccc
Confidence 367899999999999999999999975
No 244
>2w9y_A CE-FAR-7, fatty acid/retinol binding protein protein 7, isoform A, confirmed by transcript...; lipid transport; HET: CSX; 1.80A {Caenorhabditis elegans}
Probab=29.03 E-value=75 Score=26.00 Aligned_cols=58 Identities=10% Similarity=0.149 Sum_probs=36.0
Q ss_pred CHHHHHHHHh------cCHHHHHHHHhcChhHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q psy15482 114 DPATVRQLLL------DNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIA 187 (302)
Q Consensus 114 npe~iR~~~l------~NP~~~~~L~~~NPeLa~al~~~d~e~f~~~lr~~~~~~~~~e~~~~~~l~~DP~d~e~Q~~i~ 187 (302)
+-..++..+. +..++++-|++.+|+|.+-+ +.++..+.. --|=++||+...|.
T Consensus 31 eK~~Lkev~kn~~~f~~e~e~i~alK~KSp~L~~K~-----~~l~~~lk~----------------Ki~~L~Peak~Fv~ 89 (140)
T 2w9y_A 31 EKPVLHEVFQKHSCFSQCGEMIDEVSKKHPELGKRL-----ATVLEGNKK----------------RLDGLSPAAVEYAK 89 (140)
T ss_dssp THHHHHHHHTTCCC----TTHHHHHHHHCHHHHHHH-----HHHHHHHHH----------------TTTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCHHHHHHHHHHhCHHHHHHH-----HHHHHHHHH----------------HHHcCCHHHHHHHH
Confidence 3445555544 44456777777777777666 344444422 14667889999988
Q ss_pred HHHHH
Q psy15482 188 EEIKK 192 (302)
Q Consensus 188 e~i~q 192 (302)
+.|+.
T Consensus 90 kli~~ 94 (140)
T 2w9y_A 90 KLIHM 94 (140)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88886
No 245
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=29.03 E-value=34 Score=30.79 Aligned_cols=72 Identities=13% Similarity=0.156 Sum_probs=45.7
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCHH---HH--------HHcCchhhhhcc----cc------ceecccCcceee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSLA---CA--------ERVNIMRLLDTR----WA------GIAKGVGVQKIL 271 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~~---~a--------~~~gl~~~~d~~----~~------~~a~gvg~~~i~ 271 (302)
.-|+++.|. ++++++++|||...+.+..+ |. ..|+-....|.. |+ .+..|-| ..+-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~ 91 (342)
T 3pvk_A 13 TYAADITVGSNNQKLNVIVDTGSSDLWVPDVNVDCQVTYSDQTADFCKQKGTYDPSGSSASQDLNTPFKIGYGDG-SSSQ 91 (342)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECSSS-CEEE
T ss_pred EEEEEEEEcCCCcEEEEEEECCCcceEEEcCCCCCcccccccccCCCCCCCcCCCccCcceeecCCeEEEEecCC-CeEE
Confidence 468999998 79999999999998877543 52 346433333321 11 1223333 2467
Q ss_pred eEEEEeeeeecccccc
Q psy15482 272 GRIHMAIAELTNFNGD 287 (302)
Q Consensus 272 G~i~~~~~~ig~~~~~ 287 (302)
|.+..-.+.||+..+.
T Consensus 92 G~~~~D~v~ig~~~v~ 107 (342)
T 3pvk_A 92 GTLYKDTVGFGGVSIK 107 (342)
T ss_dssp EEEEEEEEEETTEEEE
T ss_pred EEEEEEEEEECCEEec
Confidence 7777778888876554
No 246
>1lya_B Cathepsin D; lysosomal aspartic protease; HET: NAG BMA MAN; 2.50A {Homo sapiens} SCOP: b.50.1.2 PDB: 1lyb_B* 1lyw_B*
Probab=28.85 E-value=38 Score=28.86 Aligned_cols=30 Identities=13% Similarity=0.221 Sum_probs=24.1
Q ss_pred EEEEcCee------EEEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYP------VKAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~------v~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|.. ..|+||||...+.++.+..++.
T Consensus 107 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 142 (241)
T 1lya_B 107 QVEVASGLTLCKEGCEAIVDTGTSLMVGPVDEVREL 142 (241)
T ss_dssp EEEETTSCEESTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEEECCeeEeccCCCEEEEECCCccccCCHHHHHHH
Confidence 35577765 4799999999999999987664
No 247
>3au4_A Myosin-X; protein-protein complex, motor protein cargo transportation, protein-apoptosis complex; 1.90A {Homo sapiens} PDB: 3au5_A 3pzd_A
Probab=28.80 E-value=1e+02 Score=30.11 Aligned_cols=44 Identities=9% Similarity=-0.057 Sum_probs=37.5
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC--CCeEEEE
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA--HEIAIEF 46 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~--~~Q~Li~ 46 (302)
.+.|.. .+|...+++|++.+|+.+|-..|..+.|+.. +-.-|++
T Consensus 218 ~~~V~l-~dg~~~~~~v~~~tt~~el~~~v~~~lgL~e~~~~FgL~~ 263 (555)
T 3au4_A 218 TSTVYC-HGGGSCKITINSHTTAGEVVEKLIRGLAMEDSRNMFALFE 263 (555)
T ss_dssp EEEEEE-TTSCEEEEEECTTCBHHHHHHHHHHHTTCTTCCSEEEEEE
T ss_pred ceEEEe-cCCCeEEEEeCCCCcHHHHHHHHHHHcCCCCCCCceEEEE
Confidence 467777 8899999999999999999999999999974 4556665
No 248
>2bju_A Plasmepsin II; aspartic proteinase, drug design, malaria, aspartyl protease, glycoprotein, hydrolase, signal, zymogen; HET: IH4; 1.56A {Plasmodium falciparum} SCOP: b.50.1.2 PDB: 1pfz_A 1xdh_A* 1lf3_A 1w6h_A* 1w6i_A* 1lf4_A* 1lf2_A* 1lee_A* 1m43_A* 2igx_A* 1sme_A* 1me6_A* 1xe6_A* 1xe5_A* 2igy_A* 2r9b_A 3f9q_A 3qrv_A 3qs1_A* 2anl_A* ...
Probab=28.28 E-value=45 Score=32.11 Aligned_cols=71 Identities=17% Similarity=0.345 Sum_probs=46.9
Q ss_pred eEEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH-HHcCchhhhhcc----c------cceecccCcceeeeEEEEeee
Q psy15482 214 VMLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA-ERVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIA 279 (302)
Q Consensus 214 ~mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a-~~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~ 279 (302)
..-|+++.|. ++++++++|||...+.+. ..|. ..|+-....|.. | -.+..|-|+ +-|.+-.-.+
T Consensus 138 ~~Y~~~I~IGTP~Q~~~vi~DTGSs~lWV~~~~C~~~~C~~~~~ydps~SsT~~~~~~~~~i~YgdGs--~~G~~~~Dtv 215 (453)
T 2bju_A 138 IMFYGDAEVGDNQQPFTFILDTGSANLWVPSVKCTTAGCLTKHLYDSSKSRTYEKDGTKVEMNYVSGT--VSGFFSKDLV 215 (453)
T ss_dssp TEEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSTTGGGSCCBCGGGCTTCEEEEEEEEEECSSSE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEECCCcceEEeccCCCccccCCCCcCCCccCCceeECCcEEEEEcCCCC--eEEEEEEEEE
Confidence 3578899998 899999999999988654 4453 346543333321 1 123445554 5688888888
Q ss_pred eeccccc
Q psy15482 280 ELTNFNG 286 (302)
Q Consensus 280 ~ig~~~~ 286 (302)
.||+..+
T Consensus 216 ~ig~~~v 222 (453)
T 2bju_A 216 TVGNLSL 222 (453)
T ss_dssp EETTEEE
T ss_pred EEeCcEE
Confidence 8887654
No 249
>1dpj_A Proteinase A; proteinase A, hydrolase-hydrolase inhibitor COM; HET: BMA MAN NAG; 1.80A {Saccharomyces cerevisiae} SCOP: b.50.1.2 PDB: 1dp5_A* 1fmu_A* 1fmx_A* 1fq5_A* 1fq4_A* 1fq6_A* 1fq7_A* 1fq8_A* 2jxr_A* 1g0v_A*
Probab=28.21 E-value=31 Score=31.06 Aligned_cols=71 Identities=15% Similarity=0.282 Sum_probs=45.1
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCC-HHHHH-HcCchhhhhcc----c------cceecccCcceeeeEEEEeeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMS-LACAE-RVNIMRLLDTR----W------AGIAKGVGVQKILGRIHMAIAE 280 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a~-~~gl~~~~d~~----~------~~~a~gvg~~~i~G~i~~~~~~ 280 (302)
.-|+++.|. ++++++++|||...+.+. ..|.. .|.-....|.. | -.+..|-| .+-|.+-.-.+.
T Consensus 14 ~Y~~~i~iGtP~q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G--s~~G~~~~D~v~ 91 (329)
T 1dpj_A 14 QYYTDITLGTPPQNFKVILDTGSSNLWVPSNECGSLACFLHSKYDHEASSSYKANGTEFAIQYGTG--SLEGYISQDTLS 91 (329)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEEEBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEEETTE--EEEEEEEEEEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCcCeEEecCCCCCcccCCcCcCCcccCcCeEECCcEEEEEECCc--eEEEEEEEEEEE
Confidence 467899998 799999999999887654 44532 35433333321 1 12344544 466887777788
Q ss_pred ecccccc
Q psy15482 281 LTNFNGD 287 (302)
Q Consensus 281 ig~~~~~ 287 (302)
||+..+.
T Consensus 92 ig~~~~~ 98 (329)
T 1dpj_A 92 IGDLTIP 98 (329)
T ss_dssp ETTEEEE
T ss_pred ECCeEEC
Confidence 8876543
No 250
>3tca_A Amyloid beta A4 precursor protein-binding family 1-interacting protein; RA domain, RBD, PH domain; 2.35A {Mus musculus}
Probab=27.88 E-value=1e+02 Score=26.63 Aligned_cols=33 Identities=9% Similarity=-0.115 Sum_probs=29.0
Q ss_pred CCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCC
Q psy15482 9 HTNECFLLDVSEDLELENFKAFCEVQSGYPAHE 41 (302)
Q Consensus 9 ~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~ 41 (302)
.+|...++.|++++|..+|-..+..+.+++.+.
T Consensus 42 ~d~~~k~i~v~~~~ta~ev~~~L~~k~~~~~~~ 74 (291)
T 3tca_A 42 DDSSTKSLMVDERQLARDVLDNLFEKTHCDCNV 74 (291)
T ss_dssp TTSCEEEEEEETTCBHHHHHHHHHHHHCCCCCT
T ss_pred CCCceEEEEeCCCCcHHHHHHHHHHHhCCCCCC
Confidence 578888999999999999999999999987643
No 251
>3h9d_A ATG8, microtubule-associated protein 1A/1B, light chain putative; autophagy, lipidation, ubiquitin-like, S protein; 2.30A {Trypanosoma brucei} SCOP: d.15.1.0
Probab=27.80 E-value=48 Score=26.26 Aligned_cols=57 Identities=12% Similarity=0.127 Sum_probs=39.8
Q ss_pred EeCCCccHHHHHHHHHhhhCCCCCCe-EEEECCeecCCCccccccc----CCCCCCEEEEEEec
Q psy15482 17 DVSEDLELENFKAFCEVQSGYPAHEI-AIEFQGVLLQDNKKTLKTH----GIQDGDLVLLKHLG 75 (302)
Q Consensus 17 eV~~~~TV~dLK~~Ie~e~gIp~~~Q-~Li~~Gk~L~D~~~TL~~~----gI~dgd~l~L~~~~ 75 (302)
-|+.+.||++|...|....++++++- -|+-|+. +...+.+++++ .=. |..|+|....
T Consensus 53 lVp~~~tv~qf~~~iRkrl~l~~~~alFl~Vn~~-~p~~~~~m~~lY~~~kd~-DGfLyv~Ys~ 114 (119)
T 3h9d_A 53 LVPSDLTVGQFVSVLRKRVQLEAESALFVYTNDT-VLPSSAQMADIYSKYKDE-DGFLYMKYSG 114 (119)
T ss_dssp EEETTCBHHHHHHHHHHHHTCCTTSCCEEEETTE-ECCTTSBHHHHHHHHCCT-TSCEEEEEEC
T ss_pred EcCCCCCHHHHHHHHHHHhCCCccceEEEEECCc-CCCccchHHHHHHHcCCC-CCeEEEEEec
Confidence 58889999999999999999998764 4445776 54434677654 223 3366665543
No 252
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=27.48 E-value=36 Score=30.64 Aligned_cols=72 Identities=13% Similarity=0.141 Sum_probs=46.6
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCHH---HHH--HcCchhhhhcc----cc------ceecccCcceeeeEEEEe
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSLA---CAE--RVNIMRLLDTR----WA------GIAKGVGVQKILGRIHMA 277 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~~---~a~--~~gl~~~~d~~----~~------~~a~gvg~~~i~G~i~~~ 277 (302)
.-|+++.|. ++++++++|||.-.+.+... |.. .|.-....|.. |+ .+..|-| ..+-|.+..-
T Consensus 13 ~Y~~~i~iGtP~Q~~~v~~DTGSs~~Wv~~~~~~C~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~g-s~~~G~~~~D 91 (339)
T 3fv3_A 13 SYASKVSVGSNKQQQTVIIDTGSSDFWVVDSNAQCGKGVDCKSSGTFTPSSSSSYKNLGAAFTIRYGDG-STSQGTWGKD 91 (339)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECTTCCTTTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEEEEEEEE
T ss_pred EEEEEEEEcCCCcEEEEEEeCCCCceEEecCCCCCCCCCCCCCCCcCCCccCcceeeCCceEEEEECCC-ceEEEEEEEE
Confidence 468999998 79999999999998887644 532 35433333321 11 1223333 2567888888
Q ss_pred eeeecccccc
Q psy15482 278 IAELTNFNGD 287 (302)
Q Consensus 278 ~~~ig~~~~~ 287 (302)
.+.||+..+.
T Consensus 92 ~v~~g~~~v~ 101 (339)
T 3fv3_A 92 TVTINGVSIT 101 (339)
T ss_dssp EEEETTEEEE
T ss_pred EEEECCEEEC
Confidence 8888876553
No 253
>1vq8_S 50S ribosomal protein L23P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: d.12.1.1 PDB: 1vq4_S* 1vq5_S* 1vq6_S* 1vq7_S* 1s72_S* 1vq9_S* 1vqk_S* 1vql_S* 1vqm_S* 1vqn_S* 1vqo_S* 1vqp_S* 1yhq_S* 1yi2_S* 1yij_S* 1yit_S* 1yj9_S* 1yjn_S* 1yjw_S* 2otj_S* ...
Probab=26.52 E-value=67 Score=23.91 Aligned_cols=33 Identities=9% Similarity=0.082 Sum_probs=29.2
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeE
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQSGYPAHEIA 43 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~ 43 (302)
...+++.|+++.|=.++|+.|+.-+|+.+..-.
T Consensus 22 ~n~~~F~V~~~AnK~qIK~ave~lf~VkV~~VN 54 (85)
T 1vq8_S 22 QNKLQFAVDDRASKGEVADAVEEQYDVTVEQVN 54 (85)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHHCCCEEEEE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCCceEEE
Confidence 467899999999999999999999999886543
No 254
>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6
Probab=26.18 E-value=1e+02 Score=27.26 Aligned_cols=45 Identities=13% Similarity=0.269 Sum_probs=25.8
Q ss_pred CCHHHHHHHHhcCHHHH---HHHHhcChhHHHHhhcCChHHHHHHHHH
Q psy15482 113 DDPATVRQLLLDNPKEI---ALLQQNNPRLADALLNGSPEDFERILRQ 157 (302)
Q Consensus 113 ~npe~iR~~~l~NP~~~---~~L~~~NPeLa~al~~~d~e~f~~~lr~ 157 (302)
.+|+.+++++.+|+... ..+.+.--+|.++|..+|.+.|.+.+..
T Consensus 222 ~~p~~~~di~~sn~~~~~~l~~~~~~l~~~~~~l~~~d~~~l~~~~~~ 269 (298)
T 2pv7_A 222 QDAELYADIIMDKSENLAVIETLKQTYDEALTFFENNDRQGFIDAFHK 269 (298)
T ss_dssp SCHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 46777777777666432 2233333556677777777777777754
No 255
>3cms_A Chymosin B; hydrolase, acid proteinase; 2.00A {Bos taurus} SCOP: b.50.1.2 PDB: 4cms_A 1czi_E* 1cms_A
Probab=26.13 E-value=53 Score=29.40 Aligned_cols=30 Identities=17% Similarity=0.310 Sum_probs=24.3
Q ss_pred EEEEcCeeE------EEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYPV------KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~v------~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|..+ .|+||||...+.++.+..++.
T Consensus 197 ~i~v~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 232 (323)
T 3cms_A 197 SVTISGVVVACEGGCQAILDTGTSKLVGPSSDILNI 232 (323)
T ss_dssp EEEETTEEEESTTCEEEEECTTCCSEEECHHHHHHH
T ss_pred eEEECCEEeecCCCcEEEEecCCccEeCCHHHHHHH
Confidence 356788765 799999999999999877653
No 256
>2lgx_A Fermitin family homolog 2; kindlin, membrane, integrin activation, cell adhesion; NMR {Homo sapiens}
Probab=25.85 E-value=65 Score=25.34 Aligned_cols=62 Identities=15% Similarity=0.107 Sum_probs=47.4
Q ss_pred eEEEEEeCCCccHHHHHHHHHhhhCCCC--CCeEEEEC--CeecCCCcccccccCCCCCCEEEEEE
Q psy15482 12 ECFLLDVSEDLELENFKAFCEVQSGYPA--HEIAIEFQ--GVLLQDNKKTLKTHGIQDGDLVLLKH 73 (302)
Q Consensus 12 ~~~~leV~~~~TV~dLK~~Ie~e~gIp~--~~Q~Li~~--Gk~L~D~~~TL~~~gI~dgd~l~L~~ 73 (302)
..+++.|..+.-|+-|..+|-+..+++. ++.-|..- .+-|.....||..|||+.+..++...
T Consensus 36 ~~~~lrV~GdlHIGGvmLkLVE~i~i~~dWSDhaLWWp~k~~WLlkt~~tLDk~giqADa~L~ftp 101 (112)
T 2lgx_A 36 RDVTLRVTGEVHIGGVMLKLVEKLDVKKDWSDHALWWEKKRTWLLKTHWTLDKYGIQADAKLQFTP 101 (112)
T ss_dssp BCCEECCCTTSCHHHHHHHHHHHCCSCCCSSSSBEEETTTTEEECCTTSCHHHHTCCTTCBBCBBC
T ss_pred ccEEEEEeeccccccchhhhhhhhcccccchHhhhhhhhhchhhhcchhhHhhhceeccccceecC
Confidence 6778999999999999998888877765 45666653 33343334799999999999887644
No 257
>2cu1_A Mitogen-activated protein kinase kinase kinase 2; PB1 domain, MAPK/ERK kinase kinase 2, MEK kinase 2, MEKK 2, signaling protein; NMR {Homo sapiens} SCOP: d.15.2.2
Probab=25.67 E-value=90 Score=24.19 Aligned_cols=45 Identities=18% Similarity=0.320 Sum_probs=37.7
Q ss_pred EEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEEEECCee
Q psy15482 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVL 50 (302)
Q Consensus 3 ItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~Gk~ 50 (302)
|.||.+..|++..|.++...+.++|..++...+|-+. .|.|-...
T Consensus 9 vRiKfE~~GEkRIi~f~RPv~f~eL~~Kv~~~fGq~l---dL~y~n~E 53 (103)
T 2cu1_A 9 VRVKFEHRGEKRILQFPRPVKLEDLRSKAKIAFGQSM---DLHYTNNE 53 (103)
T ss_dssp EEEEEEETTEEEEEEEESSCCHHHHHHHHHHHHSSCE---EEEECSSS
T ss_pred EEEEEEecCeEEEEeccCCccHHHHHHHHHHHhCCee---eEEEecce
Confidence 6677777999999999999999999999999999854 56665433
No 258
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=25.48 E-value=50 Score=29.75 Aligned_cols=67 Identities=13% Similarity=0.169 Sum_probs=41.4
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCHHHHHHcCchh---hhhccccceecccCcceeeeEEEEeeeeeccccc
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSLACAERVNIMR---LLDTRWAGIAKGVGVQKILGRIHMAIAELTNFNG 286 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~~~a~~~gl~~---~~d~~~~~~a~gvg~~~i~G~i~~~~~~ig~~~~ 286 (302)
.-|+++.|. ++++++++|||.-.+.+... .+..-.. ..... -.+..|-|. +-|.+..-.+.||++.+
T Consensus 13 ~Y~~~i~iGTP~q~~~v~~DTGSs~lWv~~~--~~y~~s~Ss~~~~~~-~~i~Yg~Gs--~~G~~~~Dtv~~g~~~v 84 (340)
T 1wkr_A 13 DYVVNVGVGSPATTYSLLVDTGSSNTWLGAD--KSYVKTSTSSATSDK-VSVTYGSGS--FSGTEYTDTVTLGSLTI 84 (340)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCCEECSS--SCCCCCTTCEEEEEE-EEEECSSCE--EEEEEEEEEEEETTEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCChhheecCC--CccCCcCCccccCce-EEEEECCcE--EEEEEEEEEEEECCEEE
Confidence 467999999 89999999999998876521 1111000 00011 123445554 56888777888877554
No 259
>2zjr_Q 50S ribosomal protein L23; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: d.12.1.1 PDB: 1sm1_R* 2aar_R 2d3o_R 2zjp_Q* 2zjq_Q 1nkw_R 3cf5_Q* 3dll_Q* 3pio_Q* 3pip_Q* 1nwy_R* 1nwx_R* 1xbp_R* 1pnu_R 1pny_R 1vor_U 1vou_U 1vow_U 1voy_U 1vp0_U
Probab=24.83 E-value=69 Score=24.33 Aligned_cols=36 Identities=17% Similarity=0.117 Sum_probs=30.7
Q ss_pred EEEEeCCCccHHHHHHHHHhhhCCCCCCeEE-EECCe
Q psy15482 14 FLLDVSEDLELENFKAFCEVQSGYPAHEIAI-EFQGV 49 (302)
Q Consensus 14 ~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~L-i~~Gk 49 (302)
+++.|+++.|=.++|+.|+.-+|+.+..-.- ...||
T Consensus 25 y~F~V~~~anK~eIK~aVE~lf~VkV~~VNT~~~~gK 61 (95)
T 2zjr_Q 25 YSFWVSPKATKTEIKDAIQQAFGVRVIGISTMNVPGK 61 (95)
T ss_dssp CEEEECSSCTHHHHHHHHHHHHCCCCSEEEECCBCCC
T ss_pred EEEEEcCCCCHHHHHHHHHHHhCCCceEEEeEEeCCc
Confidence 8999999999999999999999999976543 35554
No 260
>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0
Probab=24.37 E-value=76 Score=23.86 Aligned_cols=25 Identities=16% Similarity=0.147 Sum_probs=22.2
Q ss_pred EEEEEeCCCCeEEEEEeCCCccHHHH
Q psy15482 2 KVTVSTQHTNECFLLDVSEDLELENF 27 (302)
Q Consensus 2 qItV~~~~~g~~~~leV~~~~TV~dL 27 (302)
+|||.. .+|..+++++.+..|+.+.
T Consensus 2 ~vt~~~-~~G~~~~~~~~~g~tll~a 26 (104)
T 3lxf_A 2 AILVTT-RDGTRTEIQAEPGLSLMEA 26 (104)
T ss_dssp EEEEEC-TTSCEEEEECCTTSBHHHH
T ss_pred EEEEEe-CCCCEEEEEECCCChHHHH
Confidence 688888 7899999999999999884
No 261
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=24.21 E-value=49 Score=29.84 Aligned_cols=71 Identities=11% Similarity=0.158 Sum_probs=43.9
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCHH---HH--------HHcCchhhhhcc----cc------ceecccCcceee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSLA---CA--------ERVNIMRLLDTR----WA------GIAKGVGVQKIL 271 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~~---~a--------~~~gl~~~~d~~----~~------~~a~gvg~~~i~ 271 (302)
.-|+++.|. ++++++++|||...+.+... |. ..|.-....|.. |+ .+..|-| ..+-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~G-s~~~ 91 (342)
T 2qzx_A 13 TYTADITVGSDNQKLNVIVDTGSSDLWIPDSNVICIPKWRGDKGDFCKSAGSYSPASSRTSQNLNTRFDIKYGDG-SYAK 91 (342)
T ss_dssp CEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSSSCCTTGGGTTCCBCGGGCTTCEEEEEEEEEECTTS-CEEE
T ss_pred EEEEEEEECCCCcEEEEEEeCCCCCeEEecCCCCccCccccCccccccCCCcCCcccCCCcccCCCcEEEEeCCC-CeEE
Confidence 467899998 89999999999998887544 43 245433333321 11 1223333 2345
Q ss_pred eEEEEeeeeeccccc
Q psy15482 272 GRIHMAIAELTNFNG 286 (302)
Q Consensus 272 G~i~~~~~~ig~~~~ 286 (302)
|.+..-.+.+|+..+
T Consensus 92 G~~~~D~v~~g~~~v 106 (342)
T 2qzx_A 92 GKLYKDTVGIGGVSV 106 (342)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred EEEEEEEEEECCEEe
Confidence 777777777776544
No 262
>1miq_A Plasmepsin; aspartic proteinase zymogen, domain opening, hydrolase; 2.50A {Plasmodium vivax} SCOP: b.50.1.2 PDB: 1ls5_A*
Probab=23.98 E-value=25 Score=32.61 Aligned_cols=72 Identities=19% Similarity=0.349 Sum_probs=47.8
Q ss_pred eEEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH-HHcCchhhhhcc----cc------ceecccCcceeeeEEEEeee
Q psy15482 214 VMLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA-ERVNIMRLLDTR----WA------GIAKGVGVQKILGRIHMAIA 279 (302)
Q Consensus 214 ~mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a-~~~gl~~~~d~~----~~------~~a~gvg~~~i~G~i~~~~~ 279 (302)
..-|+++.|. ++++++++|||.-.+.+. ..|. ..|+-....|.. |+ .+..|-|. +-|.+-.-.+
T Consensus 62 ~~Y~~~i~iGTP~Q~~~v~~DTGSs~lWv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~Dtv 139 (375)
T 1miq_A 62 IMFYGEGEVGDNHQKFMLIFDTGSANLWVPSKKCNSSGCSIKNLYDSSKSKSYEKDGTKVDITYGSGT--VKGFFSKDLV 139 (375)
T ss_dssp EEEECCCEETTTTEECCEEEETTCCCEEEEBTTCCSSGGGGSCCBCGGGCTTCEEEEEEEEEEETTEE--EEEEEEEEEE
T ss_pred CEEEEEEEECCCCeEEEEEEeCCCcceEEccCCCCcccccCCCcCCCccCCceEECCcEEEEEeCCCe--EEEEEEEEEE
Confidence 3577899998 799999999999887654 4453 356544334321 11 23345444 6788888888
Q ss_pred eecccccc
Q psy15482 280 ELTNFNGD 287 (302)
Q Consensus 280 ~ig~~~~~ 287 (302)
.||++.+.
T Consensus 140 ~ig~~~v~ 147 (375)
T 1miq_A 140 TLGHLSMP 147 (375)
T ss_dssp EETTEEEE
T ss_pred EEcCceEC
Confidence 88887654
No 263
>1wmh_B Partitioning defective-6 homolog alpha; kinase, PB1 domain, OPCA motif, APKC, cell polarity, transferase/cell cycle complex; 1.50A {Homo sapiens} SCOP: d.15.2.2
Probab=23.40 E-value=1.9e+02 Score=21.56 Aligned_cols=45 Identities=11% Similarity=0.242 Sum_probs=35.2
Q ss_pred EEEEeCCCCeEEEEEe--CCCccHHHHHHHHHhhhCCCCCCeEEEEC
Q psy15482 3 VTVSTQHTNECFLLDV--SEDLELENFKAFCEVQSGYPAHEIAIEFQ 47 (302)
Q Consensus 3 ItV~~~~~g~~~~leV--~~~~TV~dLK~~Ie~e~gIp~~~Q~Li~~ 47 (302)
|.||.+-+++..-+.+ +...+.++|..+++.-..++.....+.|.
T Consensus 7 l~vKskf~aE~RRFs~d~~~~~~fe~f~~lv~~lh~L~~~~f~i~Y~ 53 (86)
T 1wmh_B 7 VEVKSKFDAEFRRFALPRASVSGFQEFSRLLRAVHQIPGLDVLLGYT 53 (86)
T ss_dssp EEEEEEETTEEEEEEEEGGGCCCHHHHHHHHHHHTTCTTCCCEEEEE
T ss_pred EEEEeecCCeeeEeEccCCCCCCHHHHHHHHHHHcCCCCCCEEEEEE
Confidence 6777766777754444 45689999999999999998878888884
No 264
>2v1y_A Phosphatidylinositol-4,5-bisphosphate 3-kinase Ca subunit alpha isoform; cancer, SH2 domain, SH3 domain, transferase, oncogen mutations, HOST-virus interaction; 2.4A {Bos taurus}
Probab=23.01 E-value=1.1e+02 Score=23.86 Aligned_cols=71 Identities=10% Similarity=0.026 Sum_probs=44.4
Q ss_pred EEEEeC-CCCeEEEEEeCCCccHHHHHHHHHhhhC-C-------CCCCeEEEE---CCee--cCCCcccccccCCCCCCE
Q psy15482 3 VTVSTQ-HTNECFLLDVSEDLELENFKAFCEVQSG-Y-------PAHEIAIEF---QGVL--LQDNKKTLKTHGIQDGDL 68 (302)
Q Consensus 3 ItV~~~-~~g~~~~leV~~~~TV~dLK~~Ie~e~g-I-------p~~~Q~Li~---~Gk~--L~D~~~TL~~~gI~dgd~ 68 (302)
+.|.+= .+|-.++++|+.+.|+.++|..+-++-. . .+++-.+.. +|.. |.|+++-|.+...- --+
T Consensus 20 v~v~~LlPnGi~i~l~~~~~~tl~eiK~~lw~eA~~~PL~~~L~d~~~Y~F~~in~~~e~Eel~DEsrrL~dv~pf-~pi 98 (108)
T 2v1y_A 20 ILVECLLPNGMIVTLECLREATLITIKHELFKEARKYPLHQLLQDESSYIFVSVTQEAEREEFFDETRRLCDLRLF-QPF 98 (108)
T ss_dssp EEEEEECTTSCEEEEEEETTCBHHHHHHHHHHHGGGSTTGGGCCCGGGCEEEEEBTTSCEEEECCTTSBGGGSCBS-SSE
T ss_pred EEEEEEcCcEEEEEEEeeccccHHHHHHHHHHHHHhCchHHHhCCccceEEEEecCCceEEEeEcCceEEEecccc-ceE
Confidence 444431 5788999999999999999997777622 2 233333332 2333 66766778777655 234
Q ss_pred EEEEEe
Q psy15482 69 VLLKHL 74 (302)
Q Consensus 69 l~L~~~ 74 (302)
|.|+.+
T Consensus 99 Lklver 104 (108)
T 2v1y_A 99 LKVIEP 104 (108)
T ss_dssp EEEECC
T ss_pred EEEEee
Confidence 444443
No 265
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=22.78 E-value=50 Score=29.75 Aligned_cols=71 Identities=13% Similarity=0.046 Sum_probs=44.2
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCCHH---HHH--------HcCchhhhhcc----cc------ceecccCcceee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMSLA---CAE--------RVNIMRLLDTR----WA------GIAKGVGVQKIL 271 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s~~---~a~--------~~gl~~~~d~~----~~------~~a~gvg~~~i~ 271 (302)
.-|+++.|. ++++++++|||.-.+.+... |.. .|.-....|.. |+ .+..|-|+ .+-
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~~~C~~~~~~~~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs-~~~ 91 (334)
T 1j71_A 13 SYAADIVVGSNQQKQTVVIDTGSSDLWVVDTDAECQVTYSGQTNNFCKQEGTFDPSSSSSAQNLNQDFSIEYGDLT-SSQ 91 (334)
T ss_dssp SEEEEEEETTTTEEEEEEEETTCCCEEEEEEEEEECCCSTTCCTTGGGSSCCBCGGGCTTCEEEEEEEEEEBTTSC-EEE
T ss_pred EEEEEEEEcCCCcEEEEEEcCCCCCEEEecCCCCCcCcccccccccccCCCcCCcccCCCcccCCCceEEEECCCC-EEE
Confidence 467899998 89999999999998887543 432 45433333321 11 12233332 345
Q ss_pred eEEEEeeeeeccccc
Q psy15482 272 GRIHMAIAELTNFNG 286 (302)
Q Consensus 272 G~i~~~~~~ig~~~~ 286 (302)
|.+..-.+.+|+..+
T Consensus 92 G~~~~D~v~~g~~~~ 106 (334)
T 1j71_A 92 GSFYKDTVGFGGISI 106 (334)
T ss_dssp EEEEEEEEEETTEEE
T ss_pred EEEEEEEEEECCEEE
Confidence 777777777776544
No 266
>1am5_A Pepsin, acid proteinase; aspartyl protease, hydrolase; 2.16A {Gadus morhua} SCOP: b.50.1.2
Probab=22.28 E-value=71 Score=28.49 Aligned_cols=70 Identities=14% Similarity=0.231 Sum_probs=43.7
Q ss_pred EEEEEEEEc--CeeEEEEEcCCCccccCC-HHHH-HHcCchhhhhcc----cc------ceecccCcceeeeEEEEeeee
Q psy15482 215 MLYINCKVN--GYPVKAFIDSGAQTTIMS-LACA-ERVNIMRLLDTR----WA------GIAKGVGVQKILGRIHMAIAE 280 (302)
Q Consensus 215 mlyi~~~in--g~~v~a~vDsGaq~~i~s-~~~a-~~~gl~~~~d~~----~~------~~a~gvg~~~i~G~i~~~~~~ 280 (302)
.-|+++.|. ++++++++|||...+.+. ..|. ..|+-....|.. |+ .+..|-|. ..|.+-.-.+.
T Consensus 13 ~Y~~~i~iGtP~q~~~v~~DTGSs~~Wv~~~~C~~~~C~~~~~y~~~~SsT~~~~~~~~~i~Yg~Gs--~~G~~~~D~v~ 90 (324)
T 1am5_A 13 EYYGVISIGTPPESFKVIFDTGSSNLWVSSSHCSAQACSNHNKFKPRQSSTYVETGKTVDLTYGTGG--MRGILGQDTVS 90 (324)
T ss_dssp EEEEEEEETTTTEEEEEEEETTCCCEEECBTTCCSHHHHTSCCBCGGGCTTCEEEEEEEEEECSSCE--EEEEEEEEEEE
T ss_pred EEEEEEEECCCCeEEEEEEeCCCcceEEecCCCCcccccCCCcCCCccCCCeEeCCcEEEEEECCCC--eEEEEEECcee
Confidence 457899998 689999999999887664 3443 245433333321 11 12344443 36777777777
Q ss_pred eccccc
Q psy15482 281 LTNFNG 286 (302)
Q Consensus 281 ig~~~~ 286 (302)
+|+..+
T Consensus 91 ~g~~~~ 96 (324)
T 1am5_A 91 VGGGSD 96 (324)
T ss_dssp SSSSCE
T ss_pred ECCcEE
Confidence 777554
No 267
>3aup_A SBG7S, BG, basic 7S globulin; pepsin-like fold, plant protein; 1.91A {Glycine max}
Probab=21.84 E-value=62 Score=30.06 Aligned_cols=29 Identities=10% Similarity=0.245 Sum_probs=24.1
Q ss_pred EEEcCeeE-E---------------EEEcCCCccccCCHHHHHHc
Q psy15482 220 CKVNGYPV-K---------------AFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 220 ~~ing~~v-~---------------a~vDsGaq~~i~s~~~a~~~ 248 (302)
+.|+|..+ . |+||||...+.++.+..+..
T Consensus 237 i~v~g~~~~~~~~~~~~~~~~g~~~aiiDSGTt~~~lp~~~~~~l 281 (403)
T 3aup_A 237 IRINQHSVFPLNKISSTIVGSTSGGTMISTSTPHMVLQQSVYQAF 281 (403)
T ss_dssp EEETTEEEECC------------CCEEECSSCSSEEECHHHHHHH
T ss_pred EEECCEEcccCChhHeeeccCCCCCEEEECCCccEEeCHHHHHHH
Confidence 56888877 2 99999999999999987653
No 268
>1wkr_A Polyporopepsin; hydrolase, hydrolase-hydrolase inhibitor complex; HET: STA; 1.30A {Irpex lacteus} SCOP: b.50.1.2
Probab=21.71 E-value=71 Score=28.72 Aligned_cols=31 Identities=10% Similarity=0.265 Sum_probs=26.4
Q ss_pred EEEEEcC-eeE----EEEEcCCCccccCCHHHHHHc
Q psy15482 218 INCKVNG-YPV----KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 218 i~~~ing-~~v----~a~vDsGaq~~i~s~~~a~~~ 248 (302)
..+.|+| ..+ .|+||||...+.++.+..++.
T Consensus 193 ~~i~v~~~~~l~~~~~aiiDSGTt~~~lP~~~~~~l 228 (340)
T 1wkr_A 193 QSIRYGSSTSILSSTAGIVDTGTTLTLIASDAFAKY 228 (340)
T ss_dssp EEEEETTTEEEEEEEEEEECTTBCSEEECHHHHHHH
T ss_pred eeEEECCCeEccCCCeEEEeCCcccccCCHHHHHHH
Confidence 4678888 665 799999999999999988775
No 269
>3pvl_A Myosin VIIA isoform 1; protein complex, novel folding, protein cargo binding, cargo proteins, motor protein-protein transport complex; 2.80A {Mus musculus}
Probab=21.31 E-value=1.1e+02 Score=30.96 Aligned_cols=45 Identities=4% Similarity=-0.054 Sum_probs=37.4
Q ss_pred CEEEEEeCCCCeEEEEEeCCCccHHHHHHHHHhhhCCCC-CCeEEEE
Q psy15482 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA-HEIAIEF 46 (302)
Q Consensus 1 MqItV~~~~~g~~~~leV~~~~TV~dLK~~Ie~e~gIp~-~~Q~Li~ 46 (302)
|.+.|.. .+|...+++|++.+|+.+|-..|..+.|+.. +-.-|++
T Consensus 264 i~~~V~l-lDgt~~~~~vds~Tt~~ell~~V~~~LgL~e~~~FgL~~ 309 (655)
T 3pvl_A 264 IMLPVTF-MDGTTKTLLTDSATTARELCNALADKISLKDRFGFSLYI 309 (655)
T ss_dssp EEEEEEE-TTSCEEEEEECTTCBHHHHHHHHHHHTTCSSCTTEEEEE
T ss_pred eEEEEEe-cCCceEEEEEccCCcHHHHHHHHHHHcCCcccccceeEE
Confidence 3567778 8999999999999999999999999999754 4456655
No 270
>2qzx_A Candidapepsin-5; aspartic proteinase, aspartyl protease, CL PAIR of basic residues, glycoprotein, protease, secreted; HET: STA; 2.50A {Candida albicans}
Probab=20.97 E-value=76 Score=28.53 Aligned_cols=30 Identities=20% Similarity=0.418 Sum_probs=24.3
Q ss_pred EEEEcCeeE----EEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYPV----KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~v----~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|..+ .|+||||...+.++.+..++.
T Consensus 201 ~i~v~g~~~~~~~~aiiDSGTt~~~lP~~~~~~l 234 (342)
T 2qzx_A 201 SVNVRGRNVDANTNVLLDSGTTISYFTRSIVRNI 234 (342)
T ss_dssp EEEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEEECCEecCCCcCEEEeCCCCCEEcCHHHHHHH
Confidence 356788654 589999999999999987764
No 271
>3tve_T 50S ribosomal protein L23; RNA, ribosome, tRNA, translation, mRNA; 3.10A {Thermus thermophilus} PDB: 3pyr_T 3pyo_T 3pyv_T 3pyt_T 3tvh_T 1n88_A 1vsa_R 1vsp_R 2hgj_W 2hgq_W 2hgu_W 2j01_X 2j03_X 2jl6_X 2jl8_X 2v47_X 2v49_X 2wdi_X 2wdj_X 2wdl_X ...
Probab=20.79 E-value=1e+02 Score=23.19 Aligned_cols=40 Identities=10% Similarity=0.073 Sum_probs=33.8
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCe-EEEECCee
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQSGYPAHEI-AIEFQGVL 50 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q-~Li~~Gk~ 50 (302)
...+++.|+++.+=-++|+.|+.-+++.+..- .+...|+.
T Consensus 21 ~n~~~F~V~~~AnK~qIK~aVe~lf~VkV~~VnT~~~~gK~ 61 (92)
T 3tve_T 21 EGKYTFWVHPKATKTEIKNAVETAFKVKVVKVNTLHVRGKK 61 (92)
T ss_dssp TTEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEEEEECCCE
T ss_pred CCEEEEEECCCCCHHHHHHHHHHHhCCceeeeeeeeeCCce
Confidence 47899999999999999999999999998665 44567664
No 272
>2ewy_A Beta-secretase 2; BACE2, aspartic protease, hydrolase; HET: DBO; 3.10A {Homo sapiens}
Probab=20.62 E-value=50 Score=30.25 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=24.0
Q ss_pred EEEEcCeeE----------EEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYPV----------KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~v----------~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|..+ .|+||||...+.++.+..+..
T Consensus 203 ~i~v~g~~~~~~~~~~~~~~aiiDSGTt~~~lP~~~~~~l 242 (383)
T 2ewy_A 203 KLEIGGQSLNLDCREYNADKAIVDSGTTLLRLPQKVFDAV 242 (383)
T ss_dssp EEEETTEECCCCTTTTTSSCEEECTTCSSEEEEHHHHHHH
T ss_pred EEEECCEEccccccccCCccEEEEcCCccccCCHHHHHHH
Confidence 356788765 699999999999999876653
No 273
>3j21_T 50S ribosomal protein L23P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=20.44 E-value=1.1e+02 Score=22.77 Aligned_cols=34 Identities=9% Similarity=0.035 Sum_probs=29.7
Q ss_pred CeEEEEEeCCCccHHHHHHHHHhhhCCCCCCeEE
Q psy15482 11 NECFLLDVSEDLELENFKAFCEVQSGYPAHEIAI 44 (302)
Q Consensus 11 g~~~~leV~~~~TV~dLK~~Ie~e~gIp~~~Q~L 44 (302)
...+++.|+++.+=.++|+.|+.-+|+.+..-.-
T Consensus 23 ~n~~~F~Vd~~AnK~qIK~AVe~lf~VkV~~VNT 56 (86)
T 3j21_T 23 ENKLTFIVDRRATKQDIKRAVEEIFNVKVEKVNT 56 (86)
T ss_dssp SCEEEEEECTTCCHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCEEEEEEcCCCCHHHHHHHHHHHcCCCceEEEE
Confidence 4688999999999999999999999998865543
No 274
>1tzs_A Cathepsin E; hydrolase, aspartic protease, activation intermediate; 2.35A {Homo sapiens}
Probab=20.38 E-value=80 Score=28.62 Aligned_cols=30 Identities=20% Similarity=0.302 Sum_probs=24.4
Q ss_pred EEEEcCeeE------EEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYPV------KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~v------~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|..+ .|+||||...+.++.+..+..
T Consensus 209 ~i~v~~~~~~~~~~~~aiiDSGTs~~~lP~~~~~~l 244 (351)
T 1tzs_A 209 NIQVGGTVMFCSEGCQAIVDTGTSLITGPSDKIKQL 244 (351)
T ss_dssp EEEETTEEEECTTCEEEEECTTCSSEEECHHHHHHH
T ss_pred EEEECCceEEcCCCceEEeccCCcceeCCHHHHHHH
Confidence 356788764 799999999999999977653
No 275
>1j71_A Candidapepsin, aspartic proteinase; candida tropicalis aspartic protease, SAPT1, hydrolase; 1.80A {Candida tropicalis} SCOP: b.50.1.2
Probab=20.33 E-value=81 Score=28.32 Aligned_cols=29 Identities=28% Similarity=0.461 Sum_probs=23.8
Q ss_pred EEEcCeeE----EEEEcCCCccccCCHHHHHHc
Q psy15482 220 CKVNGYPV----KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 220 ~~ing~~v----~a~vDsGaq~~i~s~~~a~~~ 248 (302)
+.|+|..+ .|+||||...+.++.+..++.
T Consensus 202 i~v~g~~~~~~~~~iiDSGTt~~~lP~~~~~~l 234 (334)
T 1j71_A 202 INFDGTSVSTNADVVLDSGTTITYFSQSTADKF 234 (334)
T ss_dssp EEETTEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEECCEeccCCccEEEeCCCCcEecCHHHHHHH
Confidence 55788654 589999999999999987764
No 276
>3fv3_A SAPP1P-secreted aspartic protease 1; secreted aspartic protease, virulence factor, H; HET: STA; 1.85A {Candida parapsilosis} SCOP: b.50.1.0 PDB: 3tne_A*
Probab=20.27 E-value=73 Score=28.53 Aligned_cols=29 Identities=24% Similarity=0.390 Sum_probs=23.9
Q ss_pred EEEcCeeE----EEEEcCCCccccCCHHHHHHc
Q psy15482 220 CKVNGYPV----KAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 220 ~~ing~~v----~a~vDsGaq~~i~s~~~a~~~ 248 (302)
+.|+|..+ .|+||||...+.++.+..++.
T Consensus 204 i~v~g~~~~~~~~~iiDSGtt~~~lP~~~~~~i 236 (339)
T 3fv3_A 204 VNLKGSSFSFGDGALLDSGTTLTYFPSDFAAQL 236 (339)
T ss_dssp EEESSCEEEEEEEEEECTTBSSEEECHHHHHHH
T ss_pred EEECCEeecCCccEEEeCCCCCEecCHHHHHHH
Confidence 45788765 499999999999999977764
No 277
>3zqe_A Protein PRGI, cell invasion protein SIPD; cell invasion complex, type III secretion, T3 complex, HOST pathogen interaction; HET: DXC; 2.19A {Salmonella enterica subsp} PDB: 3zqb_A* 2kv7_A 2x9c_A 2lpz_A 2jow_A
Probab=20.20 E-value=4.2e+02 Score=24.31 Aligned_cols=56 Identities=14% Similarity=0.157 Sum_probs=35.3
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhhHHHHHHHH
Q psy15482 147 SPEDFERILRQQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAA 202 (302)
Q Consensus 147 d~e~f~~~lr~~~~~~~~~e~~~~~~l~~DP~d~e~Q~~i~e~i~q~~i~~n~~~A 202 (302)
-.+.+...|..+-......-..-+..|.+||.||+-=.++...|+|=.+--|++++
T Consensus 11 ~ld~v~~~~~~~a~~~~~~v~~ai~~l~~~~~np~~l~~~Q~~~~~~s~~~n~~s~ 66 (305)
T 3zqe_A 11 YLDDVSAKFDTGVDNLQTQVTEALDKLAAKPSDPALLAAYQSKLSEYNLYRNAQSN 66 (305)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHhHHHH
Confidence 33445555544333332233445677889999999988888888885555555543
No 278
>3pvk_A Candidapepsin-2; hydrolase; 1.27A {Candida albicans} SCOP: b.50.1.2 PDB: 1eag_A 3q70_A* 1zap_A* 2qzw_A 2h6t_A* 2h6s_A*
Probab=20.19 E-value=82 Score=28.19 Aligned_cols=30 Identities=27% Similarity=0.494 Sum_probs=24.4
Q ss_pred EEEEcCee-----EEEEEcCCCccccCCHHHHHHc
Q psy15482 219 NCKVNGYP-----VKAFIDSGAQTTIMSLACAERV 248 (302)
Q Consensus 219 ~~~ing~~-----v~a~vDsGaq~~i~s~~~a~~~ 248 (302)
.+.|+|.. ..|+||||...+.++.+..++.
T Consensus 200 ~i~v~g~~~~~~~~~~iiDSGtt~~~lP~~~~~~i 234 (342)
T 3pvk_A 200 SVEVSGKTINTDNVDVLLDSGTTITYLQQDLADQI 234 (342)
T ss_dssp EEEETTEEEEEEEEEEEECTTCSSEEECHHHHHHH
T ss_pred EEEECCEEecCCCceEEEeCCCCCeecCHHHHHHH
Confidence 35578876 4799999999999999977764
Done!