RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15482
(302 letters)
>d1v5oa_ d.15.1.1 (A:) 1700011n24rik protein {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 102
Score = 55.8 bits (134), Expect = 9e-11
Identities = 33/95 (34%), Positives = 49/95 (51%), Gaps = 3/95 (3%)
Query: 1 MKVTVSTQH---TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
M +TV T F L V+ D EL NF+ CE++SG PA E I + LL D+ +
Sbjct: 8 MLITVYCVRRDLTEVTFSLQVNPDFELSNFRVLCELESGVPAEEAQIVYMEQLLTDDHCS 67
Query: 58 LKTHGIQDGDLVLLKHLGSYHATPAAVIPNFDFSG 92
L ++G++DGD+V+L + P+ SG
Sbjct: 68 LGSYGLKDGDMVVLLQKDNVGLRTPGRTPSGPSSG 102
>d2bwfa1 d.15.1.1 (A:2-74) DSK2 {Baker's yeast (Saccharomyces
cerevisiae) [TaxId: 4932]}
Length = 73
Score = 50.9 bits (122), Expect = 3e-09
Identities = 15/71 (21%), Positives = 37/71 (52%), Gaps = 3/71 (4%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+ + + + + + ++V+ + + FK +G P + + G +L+D+ +T+++
Sbjct: 2 LNIHIKS--GQDKWEVNVAPESTVLQFKEAINKANGIPVANQRLIYSGKILKDD-QTVES 58
Query: 61 HGIQDGDLVLL 71
+ IQDG V L
Sbjct: 59 YHIQDGHSVHL 69
>d1wxva1 d.15.1.1 (A:7-87) Bag-family molecular chaperone
regulator-1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 81
Score = 48.3 bits (115), Expect = 2e-08
Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 3/74 (4%)
Query: 1 MKVTVSTQ---HTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKT 57
+ VTV+ H S + +++ E G P + F+G L++ +
Sbjct: 2 LTVTVTHSNEKHDLHVTSQQGSSEPVVQDLAQVVEEVIGVPQSFQKLIFKGKSLKEMETP 61
Query: 58 LKTHGIQDGDLVLL 71
L GIQDG V+L
Sbjct: 62 LSALGIQDGCRVML 75
>d1wgga_ d.15.1.1 (A:) Ubiquitin carboxyl-terminal hydrolase 14
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 96
Score = 48.1 bits (114), Expect = 4e-08
Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 5/83 (6%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
VTV + ++++ D FKA +G + +G L+D+
Sbjct: 8 YSVTVKWG-KEKFEGVELNTDEPPMVFKAQLFALTGVQPARQKVMVKGGTLKDD--DWGN 64
Query: 61 HGIQDGDLVLLKHLGSYHATPAA 83
+++G VL+ +GS A P
Sbjct: 65 IKMKNGMTVLM--MGSADALPEE 85
>d1wh3a_ d.15.1.1 (A:) 2'-5'-oligoadenylate synthetase-like
protein, OASL {Human (Homo sapiens) [TaxId: 9606]}
Length = 87
Score = 46.8 bits (111), Expect = 1e-07
Identities = 25/77 (32%), Positives = 37/77 (48%), Gaps = 3/77 (3%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++V V + ++ + + K E Q G P + +EFQG +LQD L
Sbjct: 8 IQVFVKN-PDGGSYAYAINPNSFILGLKQQIEDQQGLPKKQQQLEFQGQVLQDW-LGLGI 65
Query: 61 HGIQDGD-LVLLKHLGS 76
+GIQD D L+L K GS
Sbjct: 66 YGIQDSDTLILSKKKGS 82
>d1ogwa_ d.15.1.1 (A:) Ubiquitin {Human (Homo sapiens) [TaxId:
9606]}
Length = 76
Score = 46.1 bits (109), Expect = 1e-07
Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
M++ V T T + L+V +EN KA + + G P + + F G L+D +TL
Sbjct: 1 MQIFVKT-LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDG-RTLSD 58
Query: 61 HGIQDGDLVLL 71
+ IQ + L
Sbjct: 59 YNIQKESTLHL 69
>d1bt0a_ d.15.1.1 (A:) Rub1 {Mouse-ear cress (Arabidopsis
thaliana) [TaxId: 3702]}
Length = 73
Score = 45.2 bits (107), Expect = 2e-07
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
M + V T T + +D+ ++ K E + G P + + + G L D+ KT K
Sbjct: 1 MLIKVKT-LTGKEIEIDIEPTDTIDRIKERVEEKEGIPPVQQRLIYAGKQLADD-KTAKD 58
Query: 61 HGIQDGDLVLL 71
+ I+ G ++ L
Sbjct: 59 YNIEGGSVLHL 69
>d1wy8a1 d.15.1.1 (A:8-83) Ubiquitin-like PHD and RING finger
domain-containing protein 2 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 45.3 bits (107), Expect = 2e-07
Identities = 13/72 (18%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
M + V T ++ + DVS +E + + ++G L++ TL
Sbjct: 1 MWIQVRTIDGSKTCTIEDVSRKATIEELRERVWALFDVRPECQRLFYRGKQLENG-YTLF 59
Query: 60 THGIQDGDLVLL 71
+ + D++ L
Sbjct: 60 DYDVGLNDIIQL 71
>d1wx9a1 d.15.1.1 (A:8-80) Large proline-rich protein BAT3 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 73
Score = 45.2 bits (107), Expect = 2e-07
Identities = 15/71 (21%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++V V T ++ V + ++ FK P+ + + +QG +LQD+ K L+
Sbjct: 1 LEVLVKTL-DSQTRTFIVGAQMNVKEFKEHIAASVSIPSEKQRLIYQGRVLQDD-KKLQE 58
Query: 61 HGIQDGDLVLL 71
+ + + L+
Sbjct: 59 YNVGGKVIHLV 69
>d1v6ea_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 45.7 bits (108), Expect = 3e-07
Identities = 16/77 (20%), Positives = 29/77 (37%), Gaps = 6/77 (7%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG------VLLQDN 54
+ V +S+ + S L + FK E+ G PA + +E G L
Sbjct: 8 VMVFISSSLNSFRSEKRYSRSLTIAEFKCKLELVVGSPASCMELELYGADDKFYSKLDQE 67
Query: 55 KKTLKTHGIQDGDLVLL 71
L ++ + DG + +
Sbjct: 68 DALLGSYPVDDGCRIHV 84
>d1oqya4 d.15.1.1 (A:1-77) Ubiquitin-like domain of Rad23 homolog
A (Hhr23a) {Human (Homo sapiens) [TaxId: 9606]}
Length = 77
Score = 44.1 bits (104), Expect = 7e-07
Identities = 13/74 (17%), Positives = 34/74 (45%), Gaps = 5/74 (6%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSG---YPAHEIAIEFQGVLLQDNKKT 57
+ +T+ T + F + + D ++ K E + G +P + + G +L D+
Sbjct: 3 VTITLKT-LQQQTFKIRMEPDETVKVLKEKIEAEKGRDAFPVAGQKLIYAGKILSDDV-P 60
Query: 58 LKTHGIQDGDLVLL 71
++ + I + + V++
Sbjct: 61 IRDYRIDEKNFVVV 74
>d1v2ya_ d.15.1.1 (A:) Ubiquitin-like protein 3300001g02rik {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 105
Score = 44.3 bits (104), Expect = 1e-06
Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 17/90 (18%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPA---------------HEIAIE 45
M V V E + V ++ + + K + +
Sbjct: 8 MTVRVCK-MDGEVMPVVVVQNATVLDLKKAIQRYVQLKQEREGGVQHISWSYVWRTYHLT 66
Query: 46 FQGVLLQDNKKTLKTHGIQDGD-LVLLKHL 74
G L +++K L+ +GI++ D + +K L
Sbjct: 67 SAGEKLTEDRKKLRDYGIRNRDEVSFIKKL 96
>d2faza1 d.15.1.1 (A:1-76) Ubiquitin-like PHD and RING finger
domain-containing protein 1 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 76
Score = 43.0 bits (101), Expect = 1e-06
Identities = 11/72 (15%), Positives = 28/72 (38%), Gaps = 2/72 (2%)
Query: 1 MKVTVSTQHTNECF-LLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
M + V T + + +S ++E + + + ++G ++D TL
Sbjct: 1 MWIQVRTMDGRQTHTVDSLSRLTKVEELRRKIQELFHVEPGLQRLFYRGKQMEDG-HTLF 59
Query: 60 THGIQDGDLVLL 71
+ ++ D + L
Sbjct: 60 DYEVRLNDTIQL 71
>d1z2ma2 d.15.1.1 (A:79-154) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 42.6 bits (100), Expect = 2e-06
Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+ + V +V + + K G + F+G L+D L
Sbjct: 4 LSILVRNN-KGRSSTYEVRLTQTVAHLKQQVSGLEGVQDDLFWLTFEGKPLEDQ-LPLGE 61
Query: 61 HGIQDGDLVLL 71
+G++ V +
Sbjct: 62 YGLKPLSTVFM 72
>d2zeqa1 d.15.1.1 (A:1-78) Ubiquitin-like domain of parkin {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 78
Score = 42.2 bits (99), Expect = 3e-06
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
M V V ++ F ++V D + K + G PA ++ + F G L ++ T++
Sbjct: 3 MIVFVRFN-SSYGFPVEVDSDTSILQLKEVVAKRQGVPADQLRVIFAGKELPNH-LTVQN 60
Query: 61 HGIQDGDLVLL 71
++ +V +
Sbjct: 61 CDLEQQSIVHI 71
>d1j8ca_ d.15.1.1 (A:) Ubiquitin-like N-terminal domain of PLIC-2
{Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 42.3 bits (99), Expect = 5e-06
Identities = 23/71 (32%), Positives = 33/71 (46%), Gaps = 3/71 (4%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+KVTV T E V E+ ++ FK + ++ + F G +L+D TL
Sbjct: 33 IKVTVKT--PKEKEEFAVPENSSVQQFKEAISKRFKSQTDQLVLIFAGKILKDQ-DTLIQ 89
Query: 61 HGIQDGDLVLL 71
HGI DG V L
Sbjct: 90 HGIHDGLTVHL 100
>d1uela_ d.15.1.1 (A:) Ubiquitin-like domain of Rad23 homolog B
(Hhr23B) {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 41.6 bits (97), Expect = 8e-06
Identities = 16/74 (21%), Positives = 35/74 (47%), Gaps = 5/74 (6%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCE---VQSGYPAHEIAIEFQGVLLQDNKKT 57
M+VT+ T + F +D+ + ++ K E + +P + + G +L D+
Sbjct: 1 MQVTLKTL-QQQTFKIDIDPEETVKALKEKIESEKGKDAFPVAGQKLIYAGKILNDDT-A 58
Query: 58 LKTHGIQDGDLVLL 71
LK + I + + V++
Sbjct: 59 LKEYKIDEKNFVVV 72
>d1wx8a1 d.15.1.1 (A:8-90) 4931431F19Rik {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 83
Score = 40.0 bits (93), Expect = 3e-05
Identities = 18/71 (25%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++V+V T +C ++E+ + FK A + + F G +L+D L
Sbjct: 11 IRVSVKTP--QDCHEFFLAENSNVRRFKKQISKYLHCNADRLVLIFTGKILRDQDI-LSQ 67
Query: 61 HGIQDGDLVLL 71
GI DG V +
Sbjct: 68 RGILDGSTVHV 78
>d1yqba1 d.15.1.1 (A:15-98) Ubiquilin-3 {Human (Homo sapiens)
[TaxId: 9606]}
Length = 84
Score = 39.6 bits (92), Expect = 3e-05
Identities = 17/71 (23%), Positives = 31/71 (43%), Gaps = 3/71 (4%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+KVTV T + V++ ++ K + ++ + F G +L+D L
Sbjct: 8 IKVTVKT--PKDKEDFSVTDTCTIQQLKEEISQRFKAHPDQLVLIFAGKILKDPDS-LAQ 64
Query: 61 HGIQDGDLVLL 71
G++DG V L
Sbjct: 65 CGVRDGLTVHL 75
>d1wjua_ d.15.1.1 (A:) NEDD8 ultimate buster-1, NUB1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 100
Score = 40.0 bits (93), Expect = 4e-05
Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 2/75 (2%)
Query: 1 MKVTVSTQH-TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
++V + + + LL+ + ++ G + I I LQ K +
Sbjct: 18 IEVFLPPRLKKDRKNLLETRLHITGRELRSKIAETFGLQENYIKIVINKKQLQLGKTL-E 76
Query: 60 THGIQDGDLVLLKHL 74
G+ ++ L
Sbjct: 77 EQGVAHNVKAMVLEL 91
>d2uyzb1 d.15.1.1 (B:20-96) SUMO-1 (smt3 homologue) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 77
Score = 38.9 bits (91), Expect = 4e-05
Identities = 17/69 (24%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+K+ V Q ++E V L+ K + G P + + F+G + DN T K
Sbjct: 3 IKLKVIGQDSSEIHF-KVKMTTHLKKLKESYCQRQGVPMNSLRFLFEGQRIADNH-TPKE 60
Query: 61 HGIQDGDLV 69
G+++ D++
Sbjct: 61 LGMEEEDVI 69
>d1v86a_ d.15.1.1 (A:) hypothetical D7wsu128e protein {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 95
Score = 37.6 bits (87), Expect = 2e-04
Identities = 14/83 (16%), Positives = 30/83 (36%), Gaps = 4/83 (4%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
V + + V D K +G P + ++G+ KTL+
Sbjct: 16 ELVDLKIIWNKTKHDVKVPLDSTGSELKQKIHSITGLPPAMQKVMYKGL--VPEDKTLRE 73
Query: 61 HGIQDGDLVLLKHLGSYHATPAA 83
+ G +++ +GS + P++
Sbjct: 74 IKVTSGAKIMV--VGSTISGPSS 94
>d1t0ya_ d.15.1.1 (A:) Ubiquitin-like domain of tubulin folding
cofactor B {Nematode (Caenorhabditis elegans) [TaxId:
6239]}
Length = 90
Score = 36.4 bits (84), Expect = 5e-04
Identities = 15/76 (19%), Positives = 28/76 (36%), Gaps = 6/76 (7%)
Query: 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQG------VLLQDNK 55
+ ++T T+ + L + K E+ G + I+ L D
Sbjct: 6 DLEITTNATDFPMEKKYPAGMSLNDLKKKLELVVGTTVDSMRIQLFDGDDQLKGELTDGA 65
Query: 56 KTLKTHGIQDGDLVLL 71
K+LK G++DG +
Sbjct: 66 KSLKDLGVRDGYRIHA 81
>d1euvb_ d.15.1.1 (B:) SUMO-1 (smt3 homologue) {Baker's yeast
(Saccharomyces cerevisiae), smt3 [TaxId: 4932]}
Length = 79
Score = 36.0 bits (83), Expect = 5e-04
Identities = 7/68 (10%), Positives = 24/68 (35%), Gaps = 1/68 (1%)
Query: 2 KVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTH 61
+ + + + + L + G + + G+ +Q ++ T +
Sbjct: 4 HINLKVSDGSSEIFFKIKKTTPLRRLMEAFAKRQGKEMDSLRFLYDGIRIQADQ-TPEDL 62
Query: 62 GIQDGDLV 69
++D D++
Sbjct: 63 DMEDNDII 70
>d2c9wb1 d.15.1.1 (B:2-104) Elongin B {Human (Homo sapiens)
[TaxId: 9606]}
Length = 103
Score = 36.4 bits (84), Expect = 6e-04
Identities = 14/63 (22%), Positives = 18/63 (28%), Gaps = 1/63 (1%)
Query: 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHG 62
V + + D E + K E P E + LL D KTL G
Sbjct: 2 VFLMIRRHKTTIFTDAKESSTVFELKRIVEGILKRPPDEQRLYKDDQLLDDG-KTLGECG 60
Query: 63 IQD 65
Sbjct: 61 FTS 63
>d1uh6a_ d.15.1.1 (A:) Ubiquitin-like protein 5, ubl5 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 100
Score = 36.1 bits (83), Expect = 6e-04
Identities = 11/71 (15%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++V + + + + + D + + K Q+G ++I ++ + + +L
Sbjct: 29 IEVVCNDRLGKK-VRVKCNTDDTIGDLKKLIAAQTGTRWNKIVLKKWYTIF-KDHVSLGD 86
Query: 61 HGIQDGDLVLL 71
+ I DG + L
Sbjct: 87 YEIHDGMNLEL 97
>d1wiaa_ d.15.1.1 (A:) Ubiquitin-like protein bab25500
(2010008E23Rik) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 95
Score = 35.7 bits (82), Expect = 0.001
Identities = 12/71 (16%), Positives = 27/71 (38%), Gaps = 4/71 (5%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
+ V + + L + + K+ ++ + +QG LLQD +TL +
Sbjct: 8 INVRLKFL-NDTEELAVARPEDTVGTLKSKYF---PGQESQMKLIYQGRLLQDPARTLSS 63
Query: 61 HGIQDGDLVLL 71
I + ++
Sbjct: 64 LNITNNCVIHC 74
>d1z2ma1 d.15.1.1 (A:3-78) Interferon-induced 15 kDa protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 76
Score = 34.5 bits (79), Expect = 0.002
Identities = 14/70 (20%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
Query: 3 VTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-DNKKTLKTH 61
+TV F + +S + + KA + G A + + + ++ L +
Sbjct: 3 LTVKML-AGNEFQVSLSSSMSVSELKAQITQKIGVHAFQQRLAVHPSGVALQDRVPLASQ 61
Query: 62 GIQDGDLVLL 71
G+ G VLL
Sbjct: 62 GLGPGSTVLL 71
>d1ttna1 d.15.1.1 (A:21-100) Dendritic cell-derived ubiquitin-like
protein {Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 34.1 bits (78), Expect = 0.002
Identities = 11/71 (15%), Positives = 21/71 (29%), Gaps = 2/71 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++ + T + L V + + K G F G L +K +
Sbjct: 4 CQLRLRL-STGKDLKLVVRSTDTVFHMKRRLHAAEGVEPGSQRWFFSGRPL-TDKMKFEE 61
Query: 61 HGIQDGDLVLL 71
I +V +
Sbjct: 62 LKIPKDYVVQV 72
>d1zkha1 d.15.1.1 (A:1-86) Splicing factor 3 subunit 1, C-terminal
domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 34.1 bits (78), Expect = 0.003
Identities = 9/62 (14%), Positives = 30/62 (48%), Gaps = 1/62 (1%)
Query: 10 TNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKTHGIQDGDLV 69
+ + + ++ K +G PA + ++++G+ ++D+ +L + + +G ++
Sbjct: 20 NGQVLVFTLPLTDQVSVIKVKIHEATGMPAGKQKLQYEGIFIKDS-NSLAYYNMANGAVI 78
Query: 70 LL 71
L
Sbjct: 79 HL 80
>d1m94a_ d.15.1.1 (A:) Ubiquitin-like modifier protein hub1
{Baker's yeast (Saccharomyces cerevisiae) [TaxId:
4932]}
Length = 73
Score = 33.5 bits (76), Expect = 0.003
Identities = 14/74 (18%), Positives = 35/74 (47%), Gaps = 2/74 (2%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLKT 60
++V V+ + + + + +FK +Q G ++I ++ G +L+D+ L+
Sbjct: 2 IEVVVND-RLGKKVRVKCLAEDSVGDFKKVLSLQIGTQPNKIVLQKGGSVLKDHIS-LED 59
Query: 61 HGIQDGDLVLLKHL 74
+ + D + L +L
Sbjct: 60 YEVHDQTNLELYYL 73
>d1wjna_ d.15.1.1 (A:) Tubulin-folding protein TbcE {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 97
Score = 34.1 bits (78), Expect = 0.004
Identities = 10/79 (12%), Positives = 34/79 (43%), Gaps = 7/79 (8%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQ-------D 53
+K+ S Q + + + + ++ K P E+ + ++ + +
Sbjct: 12 LKIKCSNQPERQILEKQLPDSMTVQKVKGLLSRLLKVPVSELLLSYESSKMPGREIELEN 71
Query: 54 NKKTLKTHGIQDGDLVLLK 72
+ + L+ + +++GD +L++
Sbjct: 72 DLQPLQFYSVENGDCLLVR 90
>d1we6a_ d.15.1.1 (A:) Splicing factor 3 subunit 1, C-terminal
domain {Thale cress (Arabidopsis thaliana) [TaxId:
3702]}
Length = 111
Score = 34.2 bits (78), Expect = 0.004
Identities = 12/72 (16%), Positives = 33/72 (45%), Gaps = 2/72 (2%)
Query: 1 MKVTVSTQHTNECFLLDV-SEDLELENFKAFCEVQSGYPAHEIAIEFQGVLLQDNKKTLK 59
++V+ ++ + + V S + + K + PA++ + + L+DN +L
Sbjct: 30 IRVSKPNENDGQFMEITVQSLSENVGSLKEKIAGEIQIPANKQKLSGKAGFLKDNM-SLA 88
Query: 60 THGIQDGDLVLL 71
+ + G+++ L
Sbjct: 89 HYNVGAGEILTL 100
>d1wgha_ d.15.1.1 (A:) Ubiquitin-like protein 3, Ubl3 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 116
Score = 31.1 bits (70), Expect = 0.057
Identities = 10/82 (12%), Positives = 24/82 (29%), Gaps = 11/82 (13%)
Query: 1 MKVTVSTQHTNECFLLDVSEDLELENFKAFCEVQ--------SGYPAHEIAIEFQGVLLQ 52
+ + + + + S + + + + + +QG L
Sbjct: 17 INLRLILV-SGKTKEFLFSPNDSASDIAKHVYDNWPMDWEEEQVSSPNILRLIYQGRFLH 75
Query: 53 DNKKTLKTHGIQDGDLVLLKHL 74
N TL + G ++ HL
Sbjct: 76 GNV-TLGALKLPFGKTTVM-HL 95
>d2fmba_ b.50.1.1 (A:) EIAV protease {Equine infectious anemia virus
[TaxId: 11665]}
Length = 104
Score = 30.4 bits (69), Expect = 0.065
Identities = 10/51 (19%), Positives = 22/51 (43%), Gaps = 5/51 (9%)
Query: 220 CKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKI 270
+N P+ +D+GA T++++ A R+ ++ G+G
Sbjct: 13 VLINDTPLNVLLDTGADTSVLTTAHYNRLK---YRGRKY--QGTGIGGVGG 58
>d1nsoa_ b.50.1.1 (A:) Mason-Pfizer monkey virus protease {Simian
retrovirus 1, SRV-1 [TaxId: 11942]}
Length = 107
Score = 27.8 bits (62), Expect = 0.72
Identities = 8/58 (13%), Positives = 17/58 (29%), Gaps = 9/58 (15%)
Query: 218 INCKVNGYPVKAFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIH 275
+ ++ I++GA TI+ L W ++ I +
Sbjct: 12 LTLWLDDKMFTGLINTGADVTIIKLE---------DWPPNWPITDTLTNLRGIGQSNN 60
>d4fiva_ b.50.1.1 (A:) Feline immunodeficiency virus (FIV) protease
{Feline immunodeficiency virus [TaxId: 11673]}
Length = 113
Score = 27.8 bits (62), Expect = 0.81
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 218 INCKVNGYPVKAFIDSGAQTTIMS 241
I VNGYP+K +D+GA TI++
Sbjct: 13 ILIFVNGYPIKFLLDTGADITILN 36
>d2rspa_ b.50.1.1 (A:) Rous sarcoma virus protease {Rous sarcoma
virus, strain pr-C [TaxId: 11886]}
Length = 124
Score = 27.1 bits (60), Expect = 1.5
Identities = 9/21 (42%), Positives = 12/21 (57%)
Query: 221 KVNGYPVKAFIDSGAQTTIMS 241
K + A +DSGA TI+S
Sbjct: 26 KQRSVYITALLDSGADITIIS 46
>d1uc2a_ d.261.1.1 (A:) Hypothetical protein PH1602 {Archaeon
Pyrococcus horikoshii [TaxId: 53953]}
Length = 480
Score = 27.7 bits (61), Expect = 1.9
Identities = 10/34 (29%), Positives = 19/34 (55%)
Query: 44 IEFQGVLLQDNKKTLKTHGIQDGDLVLLKHLGSY 77
+E Q V + + K +G+ +G +V++ H GS
Sbjct: 204 LEVQVVDKIFDPEVAKAYGLFEGQVVVMVHTGSR 237
>d1h3fa1 c.26.1.1 (A:5-347) Tyrosyl-tRNA synthetase (TyrRS) {Thermus
thermophilus [TaxId: 274]}
Length = 343
Score = 27.3 bits (59), Expect = 2.5
Identities = 22/96 (22%), Positives = 33/96 (34%), Gaps = 9/96 (9%)
Query: 106 QSSNSLSDD--PATVRQLLLDNPKEIALLQQNNPR-----LADAL--LNGSPEDFERILR 156
+ + D P+ R L +EI L + P LA L P+ RI R
Sbjct: 248 KKLMRVPDPLLPSYFRLLTDLEEEEIEALLKAGPVPAHRVLARLLTAAYALPQIPPRIDR 307
Query: 157 QQYEEREKREQLRLRMLNAHPFDTEAQKLIAEEIKK 192
YE + R A P + + +E+ K
Sbjct: 308 AFYESLGYAWEAFGRDKEAGPEEVRRAEARYDEVAK 343
>d2imla1 b.45.1.4 (A:1-189) Hypothetical protein AF1834
{Archaeoglobus fulgidus [TaxId: 2234]}
Length = 189
Score = 26.3 bits (58), Expect = 3.5
Identities = 13/75 (17%), Positives = 26/75 (34%), Gaps = 6/75 (8%)
Query: 75 GSYHATPAAVIPNFDFSGIVV----PSASSS--SSNGQSSNSLSDDPATVRQLLLDNPKE 128
GS++A P +I S + + + +G +++DD N +
Sbjct: 24 GSWNAAPIGIIVEDSSSDTAKAKLYRNRTRANLERSGVLFANVTDDALVFAVSSFGNLND 83
Query: 129 IALLQQNNPRLADAL 143
N P + A+
Sbjct: 84 DWYASPNPPIIKGAM 98
>d1hu3a_ a.118.1.14 (A:) Eukaryotic initiation factor eIF4G {Human
(Homo sapiens) [TaxId: 9606]}
Length = 243
Score = 26.3 bits (57), Expect = 4.0
Identities = 24/173 (13%), Positives = 57/173 (32%), Gaps = 1/173 (0%)
Query: 110 SLSDDPATVRQLLLDNPKEIALLQQNNPRLADALLNGSPEDFERILRQQYEEREKREQLR 169
S S A + + L+ +A N LLN ++FE+ +K+++L
Sbjct: 61 SFSVAYANMCRCLVTLKVPMADKPGNTVNFRKLLLNRCQKEFEKDKADDDVFEKKQKELE 120
Query: 170 LRMLNAHPFDTEAQKLIAEEIKKNNIEANMEAAME-YNPETFGTVVMLYINCKVNGYPVK 228
+ A++ + N++ E + + +M K+ +
Sbjct: 121 AASAPEERTRLHDELEEAKDKARRRSIGNIKFIGELFKLKMLTEAIMHDCVVKLLKNHDE 180
Query: 229 AFIDSGAQTTIMSLACAERVNIMRLLDTRWAGIAKGVGVQKILGRIHMAIAEL 281
++ + + +D + + K V +K RI + ++
Sbjct: 181 ESLECLCRLLTTIGKDLDFEKAKPRMDQYFNQMEKIVKERKTSSRIRFMLQDV 233
>d2nrka1 d.218.1.14 (A:4-170) Hypothetical protein GrpB
{Enterococcus faecalis [TaxId: 1351]}
Length = 167
Score = 25.7 bits (56), Expect = 5.6
Identities = 9/47 (19%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 151 FERILRQQYEEREKREQLRLRMLNAHPFDTEA-----QKLIAEEIKK 192
F LR+ L+ ++ AHP + I + K+
Sbjct: 114 FRNYLRENPAIATTYGTLKKQLAQAHPDSIDKYMDGKDAFIKKIEKE 160
>d1hvca_ b.50.1.1 (A:) Human immunodeficiency virus type 1 protease
{Human immunodeficiency virus type 1 [TaxId: 11676]}
Length = 203
Score = 25.3 bits (56), Expect = 7.3
Identities = 6/22 (27%), Positives = 13/22 (59%)
Query: 218 INCKVNGYPVKAFIDSGAQTTI 239
+ ++ G +A +D+GA T+
Sbjct: 11 VTIRIGGQLKEALLDTGADDTV 32
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.317 0.132 0.371
Gapped
Lambda K H
0.267 0.0670 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,095,657
Number of extensions: 51864
Number of successful extensions: 219
Number of sequences better than 10.0: 1
Number of HSP's gapped: 203
Number of HSP's successfully gapped: 49
Length of query: 302
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 217
Effective length of database: 1,240,546
Effective search space: 269198482
Effective search space used: 269198482
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (24.3 bits)