BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15483
(830 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 59.3 bits (142), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 59.3 bits (142), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 114
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 114
>pdb|3F3D|A Chain A, Crystal Structure Of Leut Bound To L-Methionine And Sodium
Length = 517
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 114
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 118
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 59.3 bits (142), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 2 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 61
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 62 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 115
>pdb|3F3A|A Chain A, Crystal Structure Of Leut Bound To L-Tryptophan And Sodium
Length = 508
Score = 58.9 bits (141), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 37/115 (32%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ YY I W L F
Sbjct: 61 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYYVYIESWTLGF 114
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 57.8 bits (138), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 36/115 (31%), Positives = 58/115 (50%), Gaps = 9/115 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W + +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 5 REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 64
Query: 124 LGQF-NRQGPIS-------VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYF 170
+G++ QG + +WR K +G + + V+ Y+ I W L F
Sbjct: 65 MGRYGGAQGHGTTPAIFYLLWR-NRFAKILGVFGLWIPLVVAIYFVYIESWTLGF 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.140 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,196,656
Number of Sequences: 62578
Number of extensions: 1059828
Number of successful extensions: 2317
Number of sequences better than 100.0: 16
Number of HSP's better than 100.0 without gapping: 15
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 2289
Number of HSP's gapped (non-prelim): 29
length of query: 830
length of database: 14,973,337
effective HSP length: 107
effective length of query: 723
effective length of database: 8,277,491
effective search space: 5984625993
effective search space used: 5984625993
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 56 (26.2 bits)