Query psy15483
Match_columns 830
No_of_seqs 390 out of 2424
Neff 5.6
Searched_HMMs 46136
Date Fri Aug 16 22:15:52 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15483.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15483hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3659|consensus 100.0 2E-99 4E-104 850.3 11.5 479 62-762 76-621 (629)
2 KOG3660|consensus 100.0 5.1E-96 1E-100 850.1 7.3 485 59-766 29-585 (629)
3 PF00209 SNF: Sodium:neurotran 100.0 2.4E-87 5.3E-92 774.5 -20.8 456 64-744 1-523 (523)
4 COG0733 Na+-dependent transpor 100.0 2.2E-71 4.8E-76 614.7 2.3 420 63-819 4-436 (439)
5 KOG3660|consensus 99.9 1E-26 2.2E-31 271.7 2.7 262 229-573 214-527 (629)
6 KOG3659|consensus 99.9 3.2E-25 6.9E-30 251.5 3.7 244 229-544 252-543 (629)
7 COG0733 Na+-dependent transpor 99.1 4.3E-12 9.3E-17 142.7 -5.5 162 321-566 232-394 (439)
8 PF00209 SNF: Sodium:neurotran 99.0 2.5E-11 5.4E-16 141.7 -5.2 165 319-543 265-463 (523)
9 PF01235 Na_Ala_symp: Sodium:a 63.4 19 0.00041 41.9 7.3 70 69-140 20-90 (416)
10 COG1115 AlsT Na+/alanine sympo 43.2 17 0.00038 42.4 2.7 76 69-146 64-143 (452)
11 TIGR00835 agcS amino acid carr 43.1 35 0.00076 39.9 5.2 60 69-130 48-107 (425)
12 TIGR00930 2a30 K-Cl cotranspor 29.1 1.1E+02 0.0024 39.4 6.9 91 67-157 78-173 (953)
No 1
>KOG3659|consensus
Probab=100.00 E-value=2e-99 Score=850.29 Aligned_cols=479 Identities=46% Similarity=0.838 Sum_probs=441.7
Q ss_pred CCCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-cccc
Q psy15483 62 DGRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-RICP 140 (830)
Q Consensus 62 ~~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~l~P 140 (830)
+.||+|++|+||+||++|+||+|||+|||||+|++||||||++||++|+++.|+||+|||+++|||.|+|++++| |+||
T Consensus 76 e~R~~W~~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~~gvw~ri~P 155 (629)
T KOG3659|consen 76 EQRPTWGSKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGCIGVWRRIAP 155 (629)
T ss_pred ccCCcchhHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccchhHHHHhCH
Confidence 349999999999999999999999999999999999999999999999999999999999999999999999999 9999
Q ss_pred CccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCC----CCcccchHHHHHHhh
Q psy15483 141 LFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTN----GSSFTFYHYDFSRAV 216 (830)
Q Consensus 141 ~~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~----~~~~s~~~~ff~~~v 216 (830)
.++|+|++++++++++..|||+|++|+++|++.||++++||++|+|+||+++|.++....+ ....+|+++||++.+
T Consensus 156 ~l~Gigy~i~~i~~~~~~yyn~i~aWA~~yl~~sft~~lPW~sC~~s~n~~~C~~~~~s~~~~~~~ek~s~a~ef~~r~~ 235 (629)
T KOG3659|consen 156 ALKGIGYAICLIAFFVGLYYNVIIAWALYYLFTSFTSNLPWESCPNSWNGPNCFDPTWSKNCDEECEKTSPAQEFWYRKV 235 (629)
T ss_pred HhcCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChhhCCCcccCCCccCccccccCchhhhccchhHHHHHhhc
Confidence 9999999999999999999999999999999999999999999999999999998642222 234678999999999
Q ss_pred hhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheeecccCcchhh
Q psy15483 217 LEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296 (830)
Q Consensus 217 L~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~irsltLpGA~~ 296 (830)
|+.+++++++|.|++.|.+.+|.+++|++++..+.||+|++
T Consensus 236 l~l~~~~~~~d~g~~~~~~~lc~~lv~~liyf~~~kG~kss--------------------------------------- 276 (629)
T KOG3659|consen 236 LGLSESHGLDDLGGPSWTLALCLVLVWLLIYFSLWKGVKSS--------------------------------------- 276 (629)
T ss_pred ccccccccccccCCCchHHHHHHHHHHHHHHHHHhcccccc---------------------------------------
Confidence 99988888999999999999999999999999999999998
Q ss_pred hHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCcccc
Q psy15483 297 GIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRL 376 (830)
Q Consensus 297 Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~~ 376 (830)
||+++++++.|++++.++++||++++|+..|+.++.+||++++
T Consensus 277 -------------------------------------GKvv~vtallPy~Il~illirgl~l~ga~~g~~y~~~~~~~kl 319 (629)
T KOG3659|consen 277 -------------------------------------GKVVWVTALLPYIILLILLVRGLTLPGAKNGIQYYLTPDIEKL 319 (629)
T ss_pred -------------------------------------ceEEeeehhhHHHHHHHHHHhcccccccccchhheecccHHHH
Confidence 8888888888888888888888888888888889999999999
Q ss_pred cCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCCCCC
Q psy15483 377 KETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFSDSS 456 (830)
Q Consensus 377 ~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~~~~ 456 (830)
+++.+|.|| ++|
T Consensus 320 ~~~~vW~dA----Atq---------------------------------------------------------------- 331 (629)
T KOG3659|consen 320 KEPSVWIDA----ATQ---------------------------------------------------------------- 331 (629)
T ss_pred hhHHHHHHH----HHH----------------------------------------------------------------
Confidence 999999999 999
Q ss_pred CCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHhhhhcCCCCC
Q psy15483 457 TDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQRQDNLSPS 536 (830)
Q Consensus 457 ~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~ 536 (830)
+++|+..+. |++..++||| ++||
T Consensus 332 -----------iffslg~Gf------------------------------G~L~AfaSyn--~F~N-------------- 354 (629)
T KOG3659|consen 332 -----------IFFSLGPGF------------------------------GVLIAFASYN--KFHN-------------- 354 (629)
T ss_pred -----------HHhhcCccc------------------------------hhhhhhhhhc--cccc--------------
Confidence 889999998 9999999999 9999
Q ss_pred CCceeeeEEEeccchhhccccceEEEEeccccccc---ccCCccc-cccCCCcEEEehhHHHHHhCCCcchHHHHHHHHH
Q psy15483 537 SITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFK---QKIPISR-VATDGPGLVFQVYPEAVATLPASNVWSMLFFFML 612 (830)
Q Consensus 537 ~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~---~~~~~~~-~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ff~~l 612 (830)
|+.||+++++.+|+++++++|+++|+++|||+.. .+.+.++ ++.+||||+|++||||+++||.|.+|+++||+||
T Consensus 355 -Nc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~~e~~~~~~gp~lafivy~Eait~~~~s~fWs~iFFlmL 433 (629)
T KOG3659|consen 355 -NCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEEIEELVAVAGPGLAFIVYPEAITNMPYSSFWSVIFFLML 433 (629)
T ss_pred -chhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccHHHhhhhcCCceEEEehhhHHhcCCchHHHHHHHHHHH
Confidence 9999999999999999999999999999999999 8888888 7899999999999999999999999999999999
Q ss_pred HHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeee--------cccc-------------
Q psy15483 613 IMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSG--------VLGS------------- 670 (830)
Q Consensus 613 ~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------------- 670 (830)
+.+|+||+++.+ +++|++.|.+...++ ++|+.+++ +++.
T Consensus 434 ~~lgl~s~~g~~e~iit~l~d~~~~~l~-------------------~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll 494 (629)
T KOG3659|consen 434 LTLGLDSMFGGIEAIITPLLDEFYLSLR-------------------KHRELFTLLVCLFSFLLGLPFITAGGGYVFPLL 494 (629)
T ss_pred HHHhhHhhhhhHHHHhccccchhhhHhh-------------------hhHHHHHHHHHHHHHhhhhhhccccceeeehhh
Confidence 999999999999 999999999964332 12222222 2333
Q ss_pred -----------------------------------ccccccceeeecccEEeeccceeeeeeeeeeeeccccccCCccCC
Q psy15483 671 -----------------------------------NHGRGGNLLTCLGGVIVSGTVKSRGVVLFSIIFHEPLQYNDYSYP 715 (830)
Q Consensus 671 -----------------------------------mvt~~G~y~~~igW~~itPli~ll~ili~slv~~~pl~y~~y~YP 715 (830)
|.++.+..||++||+.++|++ ++.++++++..++|+++..|.||
T Consensus 495 ~~y~~~~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~~yw~v~w~~vsp~~-ll~if~~~~~~~~~~~~~~y~yp 573 (629)
T KOG3659|consen 495 IDYAAGLLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPGWYWRVCWPCVSPVF-LLFIFVFSLRNFSPIQVVIYAYP 573 (629)
T ss_pred HHHhhhhHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCchhHHHHHhhhhHHH-HHHHHHHHHhccccceEEeecCC
Confidence 445555556678899999999 99999999999999999999999
Q ss_pred hhHHHHHHHHHHhhhhHHHHHHHHHHhhCCC-ccccCceeeeeccCcC
Q psy15483 716 GWAEWIGWSLALSSILMIPIVAIFKLITTPG-TLKEGGIYMFHLFDTY 762 (830)
Q Consensus 716 ~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~g-t~~er~~~~~~p~D~~ 762 (830)
+|+.++||.+..+++++||++++|++++.+| +.+||..+...|++..
T Consensus 574 ~Wa~~l~~~i~~ss~~~ip~~~~y~~~~~~~~~~~~~~~~~~~p~~~~ 621 (629)
T KOG3659|consen 574 DWALVLGWAIRASSKICIPLYAIYKFVSRRGVSGKERLHRWITPEEGH 621 (629)
T ss_pred chHHHHHHHHHhhHHHHHhHHhhheeeecCCCCchhhcccccCCCCCC
Confidence 9999999999999999999999999999986 9999999999999865
No 2
>KOG3660|consensus
Probab=100.00 E-value=5.1e-96 Score=850.09 Aligned_cols=485 Identities=41% Similarity=0.784 Sum_probs=439.7
Q ss_pred CCCCCCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-c
Q psy15483 59 EHPDGRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-R 137 (830)
Q Consensus 59 ~~~~~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~ 137 (830)
+.+++|++|+||.||+|||+|++|||||||||||+||+||||||||||+++++++|+|+++||+++||++++|++.+| |
T Consensus 29 ~~~~~R~~w~~~~efllS~ig~~vGlgNvwRFP~~~y~nGGgaFLIpY~i~l~l~GlP~~~LE~slGQf~~~g~v~~wrr 108 (629)
T KOG3660|consen 29 DAEPDRGNWKSKIEFLLSCLGYAVGLGNVWRFPYLAYKNGGGAFLIPYLIVLFLFGLPLFFLEMSLGQFTSQGPVSVWRR 108 (629)
T ss_pred ccccccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHhcCCchHHHHHHHHHHHhcchHHHHHHHHhhhhcCChHHHHHH
Confidence 334579999999999999999999999999999999999999999999999999999999999999999999999999 5
Q ss_pred cccCccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCC----------CCcccc
Q psy15483 138 ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTN----------GSSFTF 207 (830)
Q Consensus 138 l~P~~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~----------~~~~s~ 207 (830)
++|++||+|+++++++.++++||+++++|+++|+++||++++||++|+|+||++.|.+..+..+ .+..++
T Consensus 109 i~Pif~GvG~a~v~~~~~~~~Yy~viiaw~l~Yl~~sf~~~lpW~~C~~~wnt~~c~~~~~~~~~~~~~~~~~~~~~~~~ 188 (629)
T KOG3660|consen 109 ICPIFKGVGWASVVISALLAIYYIVILAWALYYLFSSFTSDLPWSTCNNPWNTEYCLDGTSKQNCANLTKLSNALNFNSP 188 (629)
T ss_pred hChHhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCChhhcCChhcCCccccccccccccccccccchhhhccc
Confidence 9999999999999999999999999999999999999999999999999999999987543211 112356
Q ss_pred hHHHHHHhhhhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheee
Q psy15483 208 YHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIR 287 (830)
Q Consensus 208 ~~~ff~~~vL~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~ir 287 (830)
.++++.+..+.....++++++|+++|++++|+.++|++++.++.||+|++
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~g~~~w~L~~~l~~~Wliv~~~i~KGvks~------------------------------ 238 (629)
T KOG3660|consen 189 VAEFWENRVLSLSDGSGIEDFGSINWPLALCLALAWLIVFFCIWKGVKSS------------------------------ 238 (629)
T ss_pred hhhhhhhhhcccccccccccCCCCChHHHHHHHHHHHHHHHHHhhccccc------------------------------
Confidence 77888887766522225899999999999999999999999999999998
Q ss_pred cccCcchhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhh
Q psy15483 288 GLMLPGALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAY 367 (830)
Q Consensus 288 sltLpGA~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~ 367 (830)
||++|+++++|++++.++++||+++|||..|+.+
T Consensus 239 ----------------------------------------------GKvvY~~a~fPyviL~iLliRgvTL~Ga~~Gi~~ 272 (629)
T KOG3660|consen 239 ----------------------------------------------GKVVYFTATFPYVILIVLLIRGVTLPGAGDGINF 272 (629)
T ss_pred ----------------------------------------------CcEEEEEehhHHHHHHHHHHHHccCCCHHHHHHH
Confidence 6677777777777777777777777777777777
Q ss_pred ccccCcccccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHH
Q psy15483 368 YLQPELSRLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCF 447 (830)
Q Consensus 368 ~~~p~~~~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~ 447 (830)
++.|+|+++.++++|.|| .+|
T Consensus 273 ~l~~~~~kL~~~~vW~dA----~~Q------------------------------------------------------- 293 (629)
T KOG3660|consen 273 YLTPDWTKLLDPQVWGDA----ATQ------------------------------------------------------- 293 (629)
T ss_pred HHhhhhHhhcChhhHHHH----HHh-------------------------------------------------------
Confidence 778999999999999999 999
Q ss_pred hhccCCCCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHh
Q psy15483 448 TWNSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTEL 527 (830)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 527 (830)
.++|.+.+. |.++..+||| ++++
T Consensus 294 --------------------iffSlsi~~------------------------------G~li~laSyn--k~~n----- 316 (629)
T KOG3660|consen 294 --------------------IFFSLSIGF------------------------------GGLIALASYN--KFNN----- 316 (629)
T ss_pred --------------------HHHhHHHHH------------------------------hhhheeeeee--ccCC-----
Confidence 889999998 9999999999 9899
Q ss_pred hhhcCCCCCCCceeeeEEEeccchhhccccceEEEEecccccccccC-CccccccCCCcEEEehhHHHHHhCCCcchHHH
Q psy15483 528 QRQDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKI-PISRVATDGPGLVFQVYPEAVATLPASNVWSM 606 (830)
Q Consensus 528 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~-~~~~~~~~g~gl~fi~~~~~~~~~p~~~~~~~ 606 (830)
|++||+.++.+.|+.+|+++|+++|+.+||++.++++ ++++++++|+||+|++||||+++||.+++|+.
T Consensus 317 ----------N~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~~v~~~g~~LaFi~YP~a~~~~p~~plWs~ 386 (629)
T KOG3660|consen 317 ----------NCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIAEVAKSGPGLAFIAYPEALAQMPLSPLWSG 386 (629)
T ss_pred ----------cceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchhhccCCCCchhhhhhHHHHHhCcccHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeee--------ccccccccccc
Q psy15483 607 LFFFMLIMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSG--------VLGSNHGRGGN 677 (830)
Q Consensus 607 ~ff~~l~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~mvt~~G~ 677 (830)
+||+||+++|+||++..+ .+++.+.|.++ ++ +.+|+.+++ +|++|+|++|.
T Consensus 387 LfF~ml~~LG~~s~~~~ve~i~t~i~D~Fp--~~------------------~~~~~~~vl~vcv~~fllGl~~~t~~G~ 446 (629)
T KOG3660|consen 387 LFFFMLLLLGLDSQFAIVETIVTAIVDEFP--RL------------------RNRRWIVVLFVCVVGFLLGLPLVTEGGI 446 (629)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHHHhcc--cc------------------cccchhhhHHHHHHHHHcchheecCcch
Confidence 999999999999999999 99999999998 21 223333332 68899999999
Q ss_pred eeee-------------------------------------------------cccEEeeccceeeeeeeeeeeeccccc
Q psy15483 678 LLTC-------------------------------------------------LGGVIVSGTVKSRGVVLFSIIFHEPLQ 708 (830)
Q Consensus 678 y~~~-------------------------------------------------igW~~itPli~ll~ili~slv~~~pl~ 708 (830)
|+++ +||++++|++ ++++++++++.|+|++
T Consensus 447 y~~~l~D~y~a~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~~~~~~~W~f~tP~~-~~~i~v~s~~~~~p~~ 525 (629)
T KOG3660|consen 447 YWFQLFDYYAASWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPSPYWKLCWKFVTPIL-LLGILVFSLVKYYPLK 525 (629)
T ss_pred hHHHHHHHHhchHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCCHHHHHHHHHhhhHH-HHHHHHHHHHhccCcc
Confidence 9776 4499999999 9999999999999999
Q ss_pred cC-CccCChhHHHHHHHHHHhhhhHHHHHHHHHHhhCCCc-cccCceeeeeccCcCCchh
Q psy15483 709 YN-DYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGT-LKEGGIYMFHLFDTYSAGI 766 (830)
Q Consensus 709 y~-~y~YP~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~gt-~~er~~~~~~p~D~~~~~~ 766 (830)
|+ .|+||.|++++||+++++|+++||++|+.++++.+|+ ++||++..++|.++|++..
T Consensus 526 y~~~~~yP~w~~~~Gw~~a~~~~~~iP~~ai~~~~~~~~~~~~~R~~~~~~p~~~~~~~~ 585 (629)
T KOG3660|consen 526 YNKVYVYPPWGDIVGWLVALSPLLVIPLYAIIQILRAKGTKLKERIKFLLRPLSDWGPRD 585 (629)
T ss_pred CCcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcHHHHHHHHhcCCcccCCcc
Confidence 99 8999999999999999999999999999999999998 9999999999999998854
No 3
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=100.00 E-value=2.4e-87 Score=774.49 Aligned_cols=456 Identities=42% Similarity=0.835 Sum_probs=324.9
Q ss_pred CCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-ccccCc
Q psy15483 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-RICPLF 142 (830)
Q Consensus 64 R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~l~P~~ 142 (830)
||+|+||.||++||+|+|||+||+|||||+|++||||||++||+++++++|+|++++|+++||++|+|++++| |++|++
T Consensus 1 R~~w~~~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~Fli~y~~~~~~~giP~~~lE~~lGq~~~~~~~~~~~~~~p~~ 80 (523)
T PF00209_consen 1 REKWSSKIGFILACIGYAVGLGNIWRFPYLCYENGGGAFLIPYLLFLLLVGIPLLYLELALGQYSRSGPIGAWKRLCPIF 80 (523)
T ss_dssp ----S-HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTSHHHS-HHHHHH
T ss_pred CCcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 8999999999999999999999999999999999999999999999999999999999999999999999999 999999
Q ss_pred cccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCC---------CCcccchHHHHH
Q psy15483 143 KGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTN---------GSSFTFYHYDFS 213 (830)
Q Consensus 143 ~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~---------~~~~s~~~~ff~ 213 (830)
||+|+++++.++++++||+++++|+++|+++|+++++||++|+|+||+++|.+..++.+ .+..++.++||+
T Consensus 81 ~giG~~~~~~~~~~~~yy~vi~~w~l~Y~~~s~~~~lpw~~C~~~~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~ff~ 160 (523)
T PF00209_consen 81 KGIGYAMVLISFLIAIYYSVIVAWALYYFFQSFTGPLPWSSCNNSWNTPNCYDIYSNCNCSNSSSYNFTQRISPAEEFFY 160 (523)
T ss_dssp HTHHHH---HHHHHHHHHHHHHHHHHHHHHH-------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 99999999999999999999999999999999999999999999999999977432211 234578899999
Q ss_pred HhhhhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheeecccCcc
Q psy15483 214 RAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPG 293 (830)
Q Consensus 214 ~~vL~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~irsltLpG 293 (830)
+++|+. ++++++.|+++|+++++++++|.+++.++.||+|+. +|+++.+.++|+++++++++|++||||
T Consensus 161 ~~vl~~--s~~i~~~g~~~~~l~~~l~~~w~iv~~~i~kGi~~~---------~kv~~~~~~~p~v~l~il~ir~ltl~g 229 (523)
T PF00209_consen 161 REVLQI--SDGISDFGSLSWQLLLCLFIVWLIVFFGIWKGIESI---------GKVMYPTLLLPFVLLIILLIRSLTLPG 229 (523)
T ss_dssp ----------------------HHHHHHHHHHHTTTTTTTHHHH---------HHHHHHHHH---HHHHHHHHHHHT-EE
T ss_pred cccccc--ccccccccchhHHHHHHHHHHHHHHHHheEeccccc---------cchhhhhhhhhhEEEEEEEEEEEcCCC
Confidence 999998 899999999999999999999999999999999998 788888888999999999999999999
Q ss_pred hhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCc
Q psy15483 294 ALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPEL 373 (830)
Q Consensus 294 A~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~ 373 (830)
+.+|++|+++ |||+++.++++|.+|++
T Consensus 230 a~~Gl~~~~~-pd~~~l~~~~vW~~A~~---------------------------------------------------- 256 (523)
T PF00209_consen 230 ASEGLKFLFT-PDWSKLLDPKVWIAALG---------------------------------------------------- 256 (523)
T ss_dssp HHHHHHHHHS-B-TTGTTSHHHHHHHHH----------------------------------------------------
T ss_pred CCCceEEEec-CCcchhhHHHHHHHHHH----------------------------------------------------
Confidence 9999999998 99999988888777744
Q ss_pred ccccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCC
Q psy15483 374 SRLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFS 453 (830)
Q Consensus 374 ~~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~ 453 (830)
|
T Consensus 257 ------------------Q------------------------------------------------------------- 257 (523)
T PF00209_consen 257 ------------------Q------------------------------------------------------------- 257 (523)
T ss_dssp ------------------H-------------------------------------------------------------
T ss_pred ------------------H-------------------------------------------------------------
Confidence 4
Q ss_pred CCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHhhhhcCC
Q psy15483 454 DSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQRQDNL 533 (830)
Q Consensus 454 ~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 533 (830)
+++|+..+. |.+.++|+|+ ++++
T Consensus 258 --------------~ffsl~ig~------------------------------G~~it~~Sy~--~~~~----------- 280 (523)
T PF00209_consen 258 --------------VFFSLSIGF------------------------------GIMITYGSYN--KFKN----------- 280 (523)
T ss_dssp --------------HHHHTTTTS------------------------------SHHHHHHTTS---TTS-----------
T ss_pred --------------HhhccCCCc------------------------------ceEEEEcCcC--CCCc-----------
Confidence 556676777 8999999999 8888
Q ss_pred CCCCCceeeeEEEeccchhhccccceEEEEecccccccccCCccccccCCCcEEEehhHHHHHhCCCcchHHHHHHHHHH
Q psy15483 534 SPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLI 613 (830)
Q Consensus 534 ~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~~~~~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ff~~l~ 613 (830)
|..||+.++...|+++|+++|+++|+++||++.+.+.|++++.++||||+|+++|+++++||++++|+++||+|++
T Consensus 281 ----n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v~~~g~~L~Fi~~P~~~~~~p~~~~~~~lFFl~l~ 356 (523)
T PF00209_consen 281 ----NIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDVPESGPGLAFIVLPEAFSQMPGGRFWAILFFLMLF 356 (523)
T ss_dssp -----SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH--H-CHHHHHTHHHHHHTTSTTHHHHHHHHHHHHH
T ss_pred ----cccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHhhCcCCCchHHHHHHHHHcCCCCcChHHHHHHHHH
Confidence 8999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred HHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeee--------ccccccccccceeee---
Q psy15483 614 MLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSG--------VLGSNHGRGGNLLTC--- 681 (830)
Q Consensus 614 ~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~mvt~~G~y~~~--- 681 (830)
++|++|+++.+ .+++.+.|.++..+| +|+..+. +++++++++|.|+++
T Consensus 357 ~agl~S~i~~~E~iv~~l~d~~~~~~~--------------------~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d 416 (523)
T PF00209_consen 357 LAGLTSQISMLEVIVSALMDEFPISRK--------------------KRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLD 416 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTST------------------------HHHHHHHHHHHHHHHHHHHHHBT---THHHHHH
T ss_pred HHHhhhcCCceeceeEeeeecCccchh--------------------hccceeHHHhhhHeEeccccccccHHHhcchHh
Confidence 99999999999 999999999884111 2222111 466677777776444
Q ss_pred ---------------------------------------------cccEEeeccceeeeeeeeeeeeccccccCCccCCh
Q psy15483 682 ---------------------------------------------LGGVIVSGTVKSRGVVLFSIIFHEPLQYNDYSYPG 716 (830)
Q Consensus 682 ---------------------------------------------igW~~itPli~ll~ili~slv~~~pl~y~~y~YP~ 716 (830)
++|+|++|++ ++++++.++.+++|++|++|.||.
T Consensus 417 ~~~~~~~l~~~~l~e~i~v~wvyG~~~~~~di~~~~g~~~~~~w~~~w~~v~Pi~-ll~ili~~i~~~~~~~~~~~~yp~ 495 (523)
T PF00209_consen 417 DYVGSISLLIIALLECIAVGWVYGWDRFREDINEMLGFKPGKFWKFLWKYVTPII-LLVILIWSIIDYKPLSYNSYIYPW 495 (523)
T ss_dssp HHTTTHHHHHHHHHHHHHHHTTSTHHHHHHHHHTT-SS---THHHHHHHTHHHHH-HHHHHHHHHHHTHHHHHHSS-TTH
T ss_pred hcchhHHHHHHHHHHHHheeccccceehhhhhcccccccHHHHHHhhEEEeeccc-ccceeeeeEEecCCCCCcceEEhH
Confidence 4599999999 999999999999999999999999
Q ss_pred hHHHHHHHHHHhhhhHHHHHHHHHHhhC
Q psy15483 717 WAEWIGWSLALSSILMIPIVAIFKLITT 744 (830)
Q Consensus 717 Wa~~iGw~l~l~sil~IPi~ai~~l~~~ 744 (830)
|+.++||+++++++++||++++||++|+
T Consensus 496 w~~~igw~i~~~~~l~Ip~~~i~~~~~~ 523 (523)
T PF00209_consen 496 WAIAIGWLIALSPLLPIPIYAIYKICRT 523 (523)
T ss_dssp HHHHHHH---------------------
T ss_pred heEEEEEEecccccccccccccccccCC
Confidence 9999999999999999999999999874
No 4
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=100.00 E-value=2.2e-71 Score=614.65 Aligned_cols=420 Identities=28% Similarity=0.497 Sum_probs=350.3
Q ss_pred CCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCCCccccc-ccc--
Q psy15483 63 GRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVW-RIC-- 139 (830)
Q Consensus 63 ~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~g~i~aw-~l~-- 139 (830)
+||+|+||.+||||++|+||||||+|||||++++||||||++||+++++++|+|++++|+++||++|+++++++ ++.
T Consensus 4 ~re~w~SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGgAFll~yli~~l~~GiPlli~Ef~iGr~~~~~~~~a~~~l~~~ 83 (439)
T COG0733 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEFAIGRRGRKNAVGAFRKLAPK 83 (439)
T ss_pred cccchhhHHHHHHHHHHHHhcccccccCCeEeeecCcchHHHHHHHHHHHHhHHHHHHHHHhhhhcCCChhHHHHHhccC
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999 787
Q ss_pred cCccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCCCCcCCCCCCCccccccccCCCCCcccchHHHHHHhhhhc
Q psy15483 140 PLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEM 219 (830)
Q Consensus 140 P~~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LPW~~C~~~wn~~~C~~~~~~~~~~~~s~~~~ff~~~vL~~ 219 (830)
+.|+++|+..+++++++++||+||+||++.|++.|+++.+| . +.+..+++|.+..
T Consensus 84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~-~---------------------~~~~~~~~f~~~~--- 138 (439)
T COG0733 84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALP-D---------------------TGEQFAQLFGQTI--- 138 (439)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-C---------------------ChhHHHHHHHHHh---
Confidence 67999999999999999999999999999999999999876 1 0122345555432
Q ss_pred cccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhh--HHHHhhheeecccCcchhhh
Q psy15483 220 QWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLMLPGALTG 297 (830)
Q Consensus 220 ~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP--~vlliiL~irsltLpGA~~G 297 (830)
++ ........++.+++.+.++.+|++|||||. +++||| +++++++++|++|||||.||
T Consensus 139 ---~~---~~~~~~~~~~~~~lt~~iv~~GV~~GIEk~--------------~kimMP~Lfvl~i~Lvi~~~tLpGA~~G 198 (439)
T COG0733 139 ---SN---PGLAVIFHLLFLVLTALIVSRGVKKGIEKA--------------NKIMMPLLFVLFIILVIRAVTLPGAMEG 198 (439)
T ss_pred ---cC---chHHHHHHHHHHHHHHHHHHHhHHhhHHHH--------------HHHHHHHHHHHHHHHHHHHHcCccHHHH
Confidence 11 222333344555566666666666666665 889999 48999999999999999999
Q ss_pred HhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCccccc
Q psy15483 298 IAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLK 377 (830)
Q Consensus 298 l~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~~~ 377 (830)
++|+|+ ||||+++|+++|.+|+||
T Consensus 199 ~~f~l~-PD~s~l~~~~v~~~AlGQ------------------------------------------------------- 222 (439)
T COG0733 199 LKFLFK-PDFSKLTDPKVWLAALGQ------------------------------------------------------- 222 (439)
T ss_pred HHHHhc-CCHHHcCchhhHHHHHHH-------------------------------------------------------
Confidence 999999 999999999888887555
Q ss_pred CccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCCCCCC
Q psy15483 378 ETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFSDSST 457 (830)
Q Consensus 378 ~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~~~~~ 457 (830)
T Consensus 223 -------------------------------------------------------------------------------- 222 (439)
T COG0733 223 -------------------------------------------------------------------------------- 222 (439)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHhhhhcCCCCCC
Q psy15483 458 DKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQRQDNLSPSS 537 (830)
Q Consensus 458 ~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~ 537 (830)
++||++.++ +++.++|+|. ++++
T Consensus 223 ----------~FFsLSlG~------------------------------g~mitYsSYL--~k~~--------------- 245 (439)
T COG0733 223 ----------AFFSLSLGF------------------------------GIMITYSSYL--SKKS--------------- 245 (439)
T ss_pred ----------HHHHHHHHH------------------------------HHHHHHHhhc--Cccc---------------
Confidence 457777777 9999999999 8887
Q ss_pred CceeeeEEEeccchhhccccceEEEEecccccccccCCccccccCCCcEEEehhHHHHHhCCCcchHHHHHHHHHHHHhh
Q psy15483 538 ITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGI 617 (830)
Q Consensus 538 ~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~~~~~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ff~~l~~~g~ 617 (830)
|..++...+.+.|+..|++||++||+.++++..+ +.+||||+|+++|+++++||.+++++++||+.+.++|+
T Consensus 246 ~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~~--------~~~GpgL~Fi~LP~if~~mp~G~~~~~lFFl~l~fAal 317 (439)
T COG0733 246 DLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLPAVFNQMPLGTLFGILFFLLLLFAAL 317 (439)
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC--------CCCCCeeehhHHHHHHHhCchhHHHHHHHHHHHHHHHH
Confidence 8889999999999999999999999999765443 46899999999999999999999999999999999999
Q ss_pred hcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeeeccccccccccceeeecccEEeeccceeeee
Q psy15483 618 DSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGGVIVSGTVKSRGV 696 (830)
Q Consensus 618 ~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mvt~~G~y~~~igW~~itPli~ll~i 696 (830)
+|+++++ .++..+.|++.. ++++.+..
T Consensus 318 TS~iSmlE~~va~l~~~~~~---------------------~R~~a~~~------------------------------- 345 (439)
T COG0733 318 TSAISMLEVLVAALIDKFGI---------------------SRKKATWL------------------------------- 345 (439)
T ss_pred HHHHHHHHHHHHHHHHHhCc---------------------chHHHHHH-------------------------------
Confidence 9999999 999999999874 11222111
Q ss_pred eeeeeeeccccccCCccCChhHHHHHHHHHHhhhhHHHHHHHHHHhhCCCccccCceeeeeccCcCCchhHHHHHHHHhh
Q psy15483 697 VLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFES 776 (830)
Q Consensus 697 li~slv~~~pl~y~~y~YP~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~gt~~er~~~~~~p~D~~~~~~~ll~ial~e~ 776 (830)
+|..+.+.+ +|.. ...++..+|..|++.+++.+|+.+++++
T Consensus 346 ------------------------~~~~~fl~g---i~~~------------ls~g~~~fD~~D~~~s~~l~plgaL~~~ 386 (439)
T COG0733 346 ------------------------IGILIFLLG---IPSI------------LSFGLSIFDLVDFVVSNILMPLGALLIA 386 (439)
T ss_pred ------------------------HHHHHHHHh---HHHH------------hcCCchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111122 2221 1123678999999999999999999999
Q ss_pred eeEeeecccchhccccch-------heeeeeehhhhhhhhheeeccccCc
Q psy15483 777 VAVSWFYGKSRGSSQQHK-------VQVKSVKYLIELEKHIITISRCRDN 819 (830)
Q Consensus 777 i~VgWiYG~~rf~~~~~~-------~~~~~~~y~~Pl~~~~~~~~~~~~~ 819 (830)
++++|++++|+..+|.++ .|+..+||++|+.+.+++++..++.
T Consensus 387 i~~~w~~~~~~~~~~~~~~s~~~~~~w~~~vr~i~Pi~i~~vl~~~~~~~ 436 (439)
T COG0733 387 IFVGWVLKKELLREELNAGSAKLFKIWLYLVRYIAPIVILVVLILGFYEL 436 (439)
T ss_pred HHHHHhcCHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 999999998888776553 5888899999999999998876654
No 5
>KOG3660|consensus
Probab=99.92 E-value=1e-26 Score=271.69 Aligned_cols=262 Identities=24% Similarity=0.335 Sum_probs=220.2
Q ss_pred cchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheeecccCcchhhhHhhhcccCCCC
Q psy15483 229 GYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQQPAPS 308 (830)
Q Consensus 229 g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~irsltLpGA~~Gl~flf~~Pd~s 308 (830)
.++..++.++|+++++++++|++++.|.. |++++.|+++++++++|++|||||.+|+.|+++ |||+
T Consensus 214 w~L~~~l~~~Wliv~~~i~KGvks~GKvv-------------Y~~a~fPyviL~iLliRgvTL~Ga~~Gi~~~l~-~~~~ 279 (629)
T KOG3660|consen 214 WPLALCLALAWLIVFFCIWKGVKSSGKVV-------------YFTATFPYVILIVLLIRGVTLPGAGDGINFYLT-PDWT 279 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhhcccccCcEE-------------EEEehhHHHHHHHHHHHHccCCCHHHHHHHHHh-hhhH
Confidence 46788999999999999999999999996 999999999999999999999999999999999 9999
Q ss_pred CCCCcccccccccccceeeeeccccCeeeeeecchh-------------HHHHHHHHHHhccccchhhhhhhcccc-Ccc
Q psy15483 309 SLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMP-------------YVVLTILLIRGLMLPGALTGIAYYLQP-ELS 374 (830)
Q Consensus 309 ~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p-------------~vil~i~~i~gl~l~~a~~~l~~~~~p-~~~ 374 (830)
+|.++++|.+|++|+ |+||+.+.|.++..+++.+ ..+...+++.|+.+++.++.+++...- +.+
T Consensus 280 kL~~~~vW~dA~~Qi--ffSlsi~~G~li~laSynk~~nN~yrDa~lv~~~~~~tS~~~g~~iFsilGfla~~~~v~~~~ 357 (629)
T KOG3660|consen 280 KLLDPQVWGDAATQI--FFSLSIGFGGLIALASYNKFNNNCYRDAILVVLLDTITSLLAGFAIFSILGFLAHEQGVSDIA 357 (629)
T ss_pred hhcChhhHHHHHHhH--HHhHHHHHhhhheeeeeeccCCcceeeeeeeeecccHHHHHHHHHHHHHHHHHHHHhCCcchh
Confidence 999999999999996 5566555555555555544 677888999999999999999997655 322
Q ss_pred cccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHH-HhhccCC
Q psy15483 375 RLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPC-FTWNSFS 453 (830)
Q Consensus 375 ~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~-~~~~~~~ 453 (830)
+ ..++|+|++|+++|++++. +|.+++|+.+||+| +++
T Consensus 358 ~--------------v~~~g~~LaFi~YP~a~~~------------------------~p~~plWs~LfF~ml~~L---- 395 (629)
T KOG3660|consen 358 E--------------VAKSGPGLAFIAYPEALAQ------------------------MPLSPLWSGLFFFMLLLL---- 395 (629)
T ss_pred h--------------ccCCCCchhhhhhHHHHHh------------------------CcccHHHHHHHHHHHHHH----
Confidence 2 4678999999999887777 99999999999999 555
Q ss_pred CCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccc--------------
Q psy15483 454 DSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTP-------------- 519 (830)
Q Consensus 454 ~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~-------------- 519 (830)
++.|....+|++++++.|+|+. .+.+|+.++..+|.+.+.+|+..+|+
T Consensus 396 --------------G~~s~~~~ve~i~t~i~D~Fp~----~~~~~~~~vl~vcv~~fllGl~~~t~~G~y~~~l~D~y~a 457 (629)
T KOG3660|consen 396 --------------GLDSQFAIVETIVTAIVDEFPR----LRNRRWIVVLFVCVVGFLLGLPLVTEGGIYWFQLFDYYAA 457 (629)
T ss_pred --------------HhhhHHHHHHHHHHHHHHhccc----ccccchhhhHHHHHHHHHcchheecCcchhHHHHHHHHhc
Confidence 8899999999999999999992 24568889999999999999999887
Q ss_pred --------------------cchhhhHhhhhcC-CCCCCCceeeeE--EEeccchhhccccceEEEEeccccccccc
Q psy15483 520 --------------------VHEHLTELQRQDN-LSPSSITFRDCI--ITSLVNCFTSFFSGFVIFTYLGYMSFKQK 573 (830)
Q Consensus 520 --------------------~~~~~~~~~~~~~-~~~~~~~~~d~~--~~~~~~~~~~~~~~~~if~~~g~~~~~~~ 573 (830)
.+++++|+++|.| ..|+ ..++-|+ +++.+ +.++.++...+|.+.+++
T Consensus 458 ~~~~~~~~~~e~~~i~wiYG~~~~~~di~~M~g~~~~~-~~~~~~W~f~tP~~------~~~i~v~s~~~~~p~~y~ 527 (629)
T KOG3660|consen 458 SWSLLFIAIFECFAIAWVYGADRFRDDIHEMIGCGRPS-PYWKLCWKFVTPIL------LLGILVFSLVKYYPLKYN 527 (629)
T ss_pred hHHHHHHHHHHHHHHhheecccchHhhHHHHhCCCCCC-HHHHHHHHHhhhHH------HHHHHHHHHHhccCccCC
Confidence 7888999999999 6666 7777774 44433 445555666666666555
No 6
>KOG3659|consensus
Probab=99.90 E-value=3.2e-25 Score=251.46 Aligned_cols=244 Identities=27% Similarity=0.403 Sum_probs=212.1
Q ss_pred cchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHHHHhhheeecccCcchhhhHhhhcccCCCC
Q psy15483 229 GYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQQPAPS 308 (830)
Q Consensus 229 g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~vlliiL~irsltLpGA~~Gl~flf~~Pd~s 308 (830)
-....+++++|++++++.++|++...|.. |+++++|++++.++++|+++||||..|+.|+++ ||++
T Consensus 252 ~~~~lc~~lv~~liyf~~~kG~kssGKvv-------------~vtallPy~Il~illirgl~l~ga~~g~~y~~~-~~~~ 317 (629)
T KOG3659|consen 252 WTLALCLVLVWLLIYFSLWKGVKSSGKVV-------------WVTALLPYIILLILLVRGLTLPGAKNGIQYYLT-PDIE 317 (629)
T ss_pred hHHHHHHHHHHHHHHHHHhccccccceEE-------------eeehhhHHHHHHHHHHhcccccccccchhheec-ccHH
Confidence 46688999999999999999999999997 899999999999999999999999999999999 9999
Q ss_pred CCCCcccccccccccceeeeeccccCeeeeeecchh-------------HHHHHHHHHHhccccchhhhhhhccccCccc
Q psy15483 309 SLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMP-------------YVVLTILLIRGLMLPGALTGIAYYLQPELSR 375 (830)
Q Consensus 309 ~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p-------------~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~ 375 (830)
|+.++.+|++|++|+ |+|+++++|.++.++++.. .++.+..+..|+..+..++.++....|+-.+
T Consensus 318 kl~~~~vW~dAAtqi--ffslg~GfG~L~AfaSyn~F~NNc~rDAll~S~in~~ts~~sgfviFsvLg~~a~~~y~~~~~ 395 (629)
T KOG3659|consen 318 KLKEPSVWIDAATQI--FFSLGPGFGVLIAFASYNKFHNNCYRDALLTSIINCLTSFLSGFVIFSVLGYMATLIYPCNEE 395 (629)
T ss_pred HHhhHHHHHHHHHHH--HhhcCccchhhhhhhhhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 999999999999998 8888888888888888877 4566778889999999999998887774221
Q ss_pred ccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHH-HhhccCCC
Q psy15483 376 LKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPC-FTWNSFSD 454 (830)
Q Consensus 376 ~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~-~~~~~~~~ 454 (830)
. -.+ ...+|||++|+++ +||++.+|.+.+|+++||+| +.+
T Consensus 396 ~-----e~~-----~~~~gp~lafivy------------------------~Eait~~~~s~fWs~iFFlmL~~l----- 436 (629)
T KOG3659|consen 396 I-----EEL-----VAVAGPGLAFIVY------------------------PEAITNMPYSSFWSVIFFLMLLTL----- 436 (629)
T ss_pred H-----HHh-----hhhcCCceEEEeh------------------------hhHHhcCCchHHHHHHHHHHHHHH-----
Confidence 1 111 2345999999999 55555699999999999999 454
Q ss_pred CCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccc---------------
Q psy15483 455 SSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTP--------------- 519 (830)
Q Consensus 455 ~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~--------------- 519 (830)
++.|+++++|.+++++.|+|+... +++|+.++..++...+..++.+++.
T Consensus 437 -------------gl~s~~g~~e~iit~l~d~~~~~l---~~~~e~~~~~~~l~~~~~~l~~~~~~g~y~~~ll~~y~~~ 500 (629)
T KOG3659|consen 437 -------------GLDSMFGGIEAIITPLLDEFYLSL---RKHRELFTLLVCLFSFLLGLPFITAGGGYVFPLLIDYAAG 500 (629)
T ss_pred -------------hhHhhhhhHHHHhccccchhhhHh---hhhHHHHHHHHHHHHHhhhhhhccccceeeehhhHHHhhh
Confidence 889999999999999999996543 4589999999999999999988655
Q ss_pred -------------------cchhhhHhhhhcCCCCCCCceeeeE
Q psy15483 520 -------------------VHEHLTELQRQDNLSPSSITFRDCI 544 (830)
Q Consensus 520 -------------------~~~~~~~~~~~~~~~~~~~~~~d~~ 544 (830)
.+++..|++.|++++|. .+||-|+
T Consensus 501 ~~vl~~Vlie~i~VswvYG~~rf~~d~~~Mlg~~P~-~yw~v~w 543 (629)
T KOG3659|consen 501 LLVLFVVLIEAIAVSWVYGVRRFSADVKQMLGFRPG-WYWRVCW 543 (629)
T ss_pred hHHHHHHHHHHHHHHhhhhHhHHHHHHHHHhCCCCc-hhHHHHH
Confidence 77889999999999999 8888774
No 7
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=99.07 E-value=4.3e-12 Score=142.72 Aligned_cols=162 Identities=14% Similarity=0.188 Sum_probs=128.9
Q ss_pred cccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCcccccCccceeeecccccccCCCceeEe
Q psy15483 321 RQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQVKFISLNYLSVQGNTGVERC 400 (830)
Q Consensus 321 gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~~~~~~~w~~a~~~~~~q~~~gl~f~ 400 (830)
+-|+||+||-+++.+++..+......+..+.+++|+.++++...+.. ..++|+||+|+
T Consensus 232 g~mitYsSYL~k~~~l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~g~----------------------~~~~GpgL~Fi 289 (439)
T COG0733 232 GIMITYSSYLSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGA----------------------DASQGPGLVFI 289 (439)
T ss_pred HHHHHHHhhcCcccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhcc----------------------CCCCCCeeehh
Confidence 33788999999999999999989999999999999999999866655 34569999999
Q ss_pred ecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCCCCCCCCCCCccceeeeeeccchhhHHH
Q psy15483 401 SRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFSDSSTDKGPSVFGEFVLYSKMGGLECVI 480 (830)
Q Consensus 401 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i 480 (830)
++|++|++ +|.|++++++||+++.+|++ +|.+.++|.++
T Consensus 290 ~LP~if~~------------------------mp~G~~~~~lFFl~l~fAal-----------------TS~iSmlE~~v 328 (439)
T COG0733 290 VLPAVFNQ------------------------MPLGTLFGILFFLLLLFAAL-----------------TSAISMLEVLV 328 (439)
T ss_pred HHHHHHHh------------------------CchhHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
Confidence 99999999 88999999999999666554 99999999999
Q ss_pred HhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccc-hhhhHhhhhcCCCCCCCceeeeEEEeccchhhccccce
Q psy15483 481 TGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVH-EHLTELQRQDNLSPSSITFRDCIITSLVNCFTSFFSGF 559 (830)
Q Consensus 481 ~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 559 (830)
+.++|+|+. +|+..+..+.++.+.+|....++.+ .. .+..|-++..+..++++++..+
T Consensus 329 a~l~~~~~~-------~R~~a~~~~~~~~fl~gi~~~ls~g~~~--------------fD~~D~~~s~~l~plgaL~~~i 387 (439)
T COG0733 329 AALIDKFGI-------SRKKATWLIGILIFLLGIPSILSFGLSI--------------FDLVDFVVSNILMPLGALLIAI 387 (439)
T ss_pred HHHHHHhCc-------chHHHHHHHHHHHHHHhHHHHhcCCchH--------------HHHHHHHHHHHHHHHHHHHHHH
Confidence 999999965 4445555666666666644433333 10 3445666777788888898888
Q ss_pred EEEEecc
Q psy15483 560 VIFTYLG 566 (830)
Q Consensus 560 ~if~~~g 566 (830)
++.++++
T Consensus 388 ~~~w~~~ 394 (439)
T COG0733 388 FVGWVLK 394 (439)
T ss_pred HHHHhcC
Confidence 8888875
No 8
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=98.96 E-value=2.5e-11 Score=141.67 Aligned_cols=165 Identities=17% Similarity=0.240 Sum_probs=125.0
Q ss_pred cccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhccccCcccccCccceeeecccccccCCCcee
Q psy15483 319 PLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQVKFISLNYLSVQGNTGVE 398 (830)
Q Consensus 319 A~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~~~p~~~~~~~~~~w~~a~~~~~~q~~~gl~ 398 (830)
+.|-+++|+||.+++.++...+......+..+.++.|++++++.+.++.....+.+++ .++|+|++
T Consensus 265 g~G~~it~~Sy~~~~~n~~~~a~~v~~~~~~~sllag~~if~~~g~~a~~~~~~i~~v--------------~~~g~~L~ 330 (523)
T PF00209_consen 265 GFGIMITYGSYNKFKNNIFRDALIVAFINTLVSLLAGLVIFSVLGFLANELGVPISDV--------------PESGPGLA 330 (523)
T ss_dssp TSSHHHHHHTTS-TTS-SHHHHHHHHHHHHHHHHTTGTHHHHHHHHHHHHHHHHHHH----------------H-CHHHH
T ss_pred CcceEEEEcCcCCCCccccccceEEEcCchhhhHhHHHHHHhHHhhcccCCCCChhHh--------------hCcCCCch
Confidence 4555899999999999999988889999999999999999988877777554443332 34699999
Q ss_pred EeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHHhhccCCCCCCCCCCCccceeeeeeccchhhH
Q psy15483 399 RCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFTWNSFSDSSTDKGPSVFGEFVLYSKMGGLEC 478 (830)
Q Consensus 399 f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~ 478 (830)
|+++|++++. +|.|++|+++||+|++++ ++.|+...+|+
T Consensus 331 Fi~~P~~~~~------------------------~p~~~~~~~lFFl~l~~a-----------------gl~S~i~~~E~ 369 (523)
T PF00209_consen 331 FIVLPEAFSQ------------------------MPGGRFWAILFFLMLFLA-----------------GLTSQISMLEV 369 (523)
T ss_dssp HTHHHHHHTT------------------------STTHHHHHHHHHHHHHHH-----------------HHHHHHHHHHH
T ss_pred HHHHHHHHHc------------------------CCCCcChHHHHHHHHHHH-----------------HhhhcCCceec
Confidence 9999999988 899999999999995543 55999999999
Q ss_pred HHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccc----------------------------------cchhh
Q psy15483 479 VITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTP----------------------------------VHEHL 524 (830)
Q Consensus 479 ~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~----------------------------------~~~~~ 524 (830)
+++.++|+|+.. +++|+.++..+|.+.+.+|+...++ .++..
T Consensus 370 iv~~l~d~~~~~----~~~r~~~~~~v~~~~~l~gl~~~t~~G~~~~~~~d~~~~~~~l~~~~l~e~i~v~wvyG~~~~~ 445 (523)
T PF00209_consen 370 IVSALMDEFPIS----RKKRKKVTLIVCLVGFLLGLPFCTQGGIYIFDLLDDYVGSISLLIIALLECIAVGWVYGWDRFR 445 (523)
T ss_dssp HHHHHHHTST--------HHHHHHHHHHHHHHHHHHHHHBT---THHHHHHHHTTTHHHHHHHHHHHHHHHTTSTHHHHH
T ss_pred eeEeeeecCccc----hhhccceeHHHhhhHeEeccccccccHHHhcchHhhcchhHHHHHHHHHHHHheeccccceehh
Confidence 999999999875 3467777777887777777776554 56778
Q ss_pred hHhhhhcCCCCCCCceeee
Q psy15483 525 TELQRQDNLSPSSITFRDC 543 (830)
Q Consensus 525 ~~~~~~~~~~~~~~~~~d~ 543 (830)
+|++++.+..|. ..++-+
T Consensus 446 ~di~~~~g~~~~-~~w~~~ 463 (523)
T PF00209_consen 446 EDINEMLGFKPG-KFWKFL 463 (523)
T ss_dssp HHHHTT-SS----THHHHH
T ss_pred hhhcccccccHH-HHHHhh
Confidence 899999888766 445544
No 9
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=63.39 E-value=19 Score=41.91 Aligned_cols=70 Identities=19% Similarity=0.146 Sum_probs=51.4
Q ss_pred chhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCC-Cccccccccc
Q psy15483 69 SNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQ-GPISVWRICP 140 (830)
Q Consensus 69 sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~-g~i~aw~l~P 140 (830)
|..|-+.++++..||.|||--=..=..--|=| -+-+.-..-++|.+.=+.|..+||+.|. +.-+-|+=.|
T Consensus 20 S~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG--AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP 90 (416)
T PF01235_consen 20 SPFQALCTALAGTVGTGNIAGVATAIAIGGPG--AIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGP 90 (416)
T ss_pred ChHHHHHHHHHhccCcchHHHHHHHHHhhchh--HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecH
Confidence 57899999999999999996544333332334 4667777889999999999999998773 4444554444
No 10
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=43.16 E-value=17 Score=42.42 Aligned_cols=76 Identities=21% Similarity=0.272 Sum_probs=55.9
Q ss_pred chhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccC-CCcccccccccCc---cc
Q psy15483 69 SNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNR-QGPISVWRICPLF---KG 144 (830)
Q Consensus 69 sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r-~g~i~aw~l~P~~---~G 144 (830)
|.+|-+.++++..||.||+=-=..-..--|=||=+ +.=..-++|.-.-+.|-.++|+-| ++.-+-+|=.|.+ ||
T Consensus 64 S~FqAl~~sla~~VGtGNIaGVAtAI~~GGPGAvF--WMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kG 141 (452)
T COG1115 64 SSFQALMTSLAARVGTGNIAGVATAIALGGPGAVF--WMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKG 141 (452)
T ss_pred ChHHHHHHHHHhccCcchHHHHHHHHHcCCCccHH--HHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhh
Confidence 47899999999999999996655444444556643 444566789999999999999776 5667777766642 55
Q ss_pred cc
Q psy15483 145 VG 146 (830)
Q Consensus 145 vG 146 (830)
+|
T Consensus 142 l~ 143 (452)
T COG1115 142 LG 143 (452)
T ss_pred cC
Confidence 55
No 11
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=43.09 E-value=35 Score=39.87 Aligned_cols=60 Identities=22% Similarity=0.232 Sum_probs=49.5
Q ss_pred chhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhhccCC
Q psy15483 69 SNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQ 130 (830)
Q Consensus 69 sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ~~r~ 130 (830)
|..|-+.+.++..||.|||--.|.-...-|=|| +-+.-...++|...-+.|..++|+.|+
T Consensus 48 S~fqA~~~ala~~VG~GnI~Gva~Ai~~GGpGA--vFWMWI~allGm~~~~~e~~L~~~yr~ 107 (425)
T TIGR00835 48 SSFQALFTSLAARVGIGNIVGVATAIAIGGPGA--VFWMWVTAFIGMATKFVESTLAQKYRE 107 (425)
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCc--hHHHHHHHHHHHHHHHHHHHHHHHeee
Confidence 678999999999999999999998843333344 456667888899999999999998884
No 12
>TIGR00930 2a30 K-Cl cotransporter.
Probab=29.11 E-value=1.1e+02 Score=39.43 Aligned_cols=91 Identities=14% Similarity=0.121 Sum_probs=49.3
Q ss_pred CCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHH-HHHHhHHHHHHHHHHhhccCCCccccc---ccccCc
Q psy15483 67 WGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLM-LVFGAVPLFYMELILGQFNRQGPISVW---RICPLF 142 (830)
Q Consensus 67 W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~-l~~iGiPll~lElalGQ~~r~g~i~aw---~l~P~~ 142 (830)
.+--.+-.+-|++.-+|.|=+-|++++.++-|-+.-++.++++ ++..-.-+-+.|++---+-+.|-.-.+ .+.|.+
T Consensus 78 lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aGG~Y~yisralGp~~ 157 (953)
T TIGR00930 78 FGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGGGAYYLISRSLGPEF 157 (953)
T ss_pred cceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhCcHH
Confidence 3333456788899999999999999999988844323333333 222233344455554222233323233 245654
Q ss_pred c-ccchhhHHHHHhhh
Q psy15483 143 K-GVGFCAVLVAFYVS 157 (830)
Q Consensus 143 ~-GvG~~~vl~~~li~ 157 (830)
. -+||...+...+.+
T Consensus 158 Gf~iG~~~~la~~va~ 173 (953)
T TIGR00930 158 GGSIGLIFAFANAVAV 173 (953)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3 24554444333333
Done!