Query psy15483
Match_columns 830
No_of_seqs 390 out of 2424
Neff 5.6
Searched_HMMs 29240
Date Fri Aug 16 22:16:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15483.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15483hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a65_A Leutaa, Na(+):neurotran 100.0 6.4E-83 2.2E-87 732.3 -11.2 442 63-819 4-471 (519)
2 2a65_A Leutaa, Na(+):neurotran 99.7 1.1E-20 3.7E-25 217.3 -7.8 308 230-732 167-496 (519)
3 3u85_B Histone-lysine N-methyl 7.5 1.1E+02 0.0037 19.9 0.4 9 87-95 2-10 (21)
4 3gia_A Uncharacterized protein 3.1 1E+03 0.035 25.1 4.7 66 69-136 9-75 (444)
5 2ki0_A DS119; beta-alpha-beta, 3.0 2.1E+02 0.0071 20.5 -0.6 15 9-23 14-28 (36)
6 3bx6_A Alpha-1-acid glycoprote 2.3 2.4E+02 0.0082 27.8 -1.5 16 7-22 133-148 (192)
7 4f4l_A ION transport protein; 2.2 4E+02 0.014 23.7 0.0 21 471-491 81-101 (112)
8 1rk8_C PYM protein, within the 2.2 4.4E+02 0.015 21.5 0.1 16 7-22 34-49 (58)
9 3tpo_A Importin subunit alpha- 2.0 8.1E+02 0.028 27.0 2.2 19 7-25 9-27 (529)
10 1yb3_A Hypothetical protein; s 1.9 8.4E+02 0.029 23.8 1.7 22 772-793 101-122 (175)
No 1
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=100.00 E-value=6.4e-83 Score=732.31 Aligned_cols=442 Identities=18% Similarity=0.289 Sum_probs=376.7
Q ss_pred CCCCCCchhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHHHhHHHHHHHHHHhh----ccCCCccccc-c
Q psy15483 63 GRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQ----FNRQGPISVW-R 137 (830)
Q Consensus 63 ~R~~W~sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~iGiPll~lElalGQ----~~r~g~i~aw-~ 137 (830)
+|++|+||.+|+|||+|+||||||+|||||+|++||||||++||+++++++|+|++++|+++|| ++|+|++++| +
T Consensus 4 ~R~~W~sr~~FiLa~~G~AVGLGNiWRFPyl~~~nGGgAFlipYli~l~~~GiPll~~E~alGq~~~~~~r~~~i~a~~~ 83 (519)
T 2a65_A 4 KREHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYGGAQGHGTTPAIFYL 83 (519)
T ss_dssp -CCCCSCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTTTCCSHHHHHHH
T ss_pred ccccCCcHHHHHHHHHHHHhcccHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHhcccchhccCCCHHHHHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999 8889999999 8
Q ss_pred cccC--ccccchhhHHHHHhhhhhhHHHHHHHHHHHHHhcCCCCC--CCcCCCCCCCccccccccCCCCCcccchHHHHH
Q psy15483 138 ICPL--FKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELP--WLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFS 213 (830)
Q Consensus 138 l~P~--~~GvG~~~vl~~~li~~YY~VIiaW~l~Y~~~Sf~~~LP--W~~C~~~wn~~~C~~~~~~~~~~~~s~~~~ff~ 213 (830)
++|+ |+|+|++++++++++++||+|++||+++|+++|+++++| |++|+ +|.+ ..++.++||+
T Consensus 84 l~~~~~~~giG~~~v~~~~~i~~yY~vi~gW~l~Y~~~s~~~~lp~~w~~~~------~~~~--------~~~~~~~~f~ 149 (519)
T 2a65_A 84 LWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT------DPDS--------ILRPFKEFLY 149 (519)
T ss_dssp HSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCCCC--C------CHHH--------HHHHHHHHHH
T ss_pred hcCCcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccC------Cccc--------ccCcHHHHHH
Confidence 9987 999999999999999999999999999999999999999 66432 1211 1245667886
Q ss_pred HhhhhccccCCCCCCcchhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhh--HHHHhhheeecccC
Q psy15483 214 RAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLML 291 (830)
Q Consensus 214 ~~vL~~~~s~gi~~~g~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP--~vlliiL~irsltL 291 (830)
+ +++. ++++++.|+++|++++|++++|++++.++.||+|++.+ |+ .+++|| +++++++++|++||
T Consensus 150 ~-~l~~--~~~~~~~g~~~~~~~~~~~~~w~i~~~ii~~Gv~kgie--------k~--~~~~mp~l~vlliiL~ir~ltL 216 (519)
T 2a65_A 150 S-YIGV--PKGDEPILKPSLFAYIVFLITMFINVSILIRGISKGIE--------RF--AKIAMPTLFILAVFLVIRVFLL 216 (519)
T ss_dssp H-HHTC--CSSSSCBCCCCHHHHHHHHHHHHHHHHHHTTCTTTTHH--------HH--HHHHHHHHHHHHHHHHHHHTTC
T ss_pred H-HHCC--CCCcccccCccHHHHHHHHHHHHHHHHHHHHhhhhhhH--------HH--HHHHHHHHHHHHHHHHHHHhcC
Confidence 5 5665 78899999999999999999999999999999977643 33 566676 68999999999999
Q ss_pred cc----hhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhh
Q psy15483 292 PG----ALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAY 367 (830)
Q Consensus 292 pG----A~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~ 367 (830)
|| |.+|++|+|+ ||||++.++++|.+|+
T Consensus 217 pGp~~~A~~Gl~~~~~-Pd~s~L~~~~vw~~A~----------------------------------------------- 248 (519)
T 2a65_A 217 ETPNGTAADGLNFLWT-PDFEKLKDPGVWIAAV----------------------------------------------- 248 (519)
T ss_dssp EETTEEHHHHHHHHHS-CCTTSTTCHHHHHHHH-----------------------------------------------
T ss_pred CCCchhHHHHHHHHhc-CCHHHhCCHHHHHHHH-----------------------------------------------
Confidence 99 9999999998 9999998877777764
Q ss_pred ccccCcccccCccceeeecccccccCCCceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHH
Q psy15483 368 YLQPELSRLKETQVKFISLNYLSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCF 447 (830)
Q Consensus 368 ~~~p~~~~~~~~~~w~~a~~~~~~q~~~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~ 447 (830)
+|
T Consensus 249 -----------------------gQ------------------------------------------------------- 250 (519)
T 2a65_A 249 -----------------------GQ------------------------------------------------------- 250 (519)
T ss_dssp -----------------------HH-------------------------------------------------------
T ss_pred -----------------------HH-------------------------------------------------------
Confidence 55
Q ss_pred hhccCCCCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHh
Q psy15483 448 TWNSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTEL 527 (830)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 527 (830)
++||++.++ |.+.++|||+ ++++
T Consensus 251 --------------------~FFSLslG~------------------------------G~~ity~SY~--~~~~----- 273 (519)
T 2a65_A 251 --------------------IFFTLSLGF------------------------------GAIITYASYV--RKDQ----- 273 (519)
T ss_dssp --------------------HHHHHTTTS------------------------------SHHHHHHTTS--CTTS-----
T ss_pred --------------------HHHHhHHHH------------------------------hHHhhhhccc--CCCc-----
Confidence 567777888 9999999999 9898
Q ss_pred hhhcCCCCCCCceeeeEEEeccchhhccccceEEEEecccccccccCC-ccccccCC-CcEEEehhHHHHHhCCCcchHH
Q psy15483 528 QRQDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIP-ISRVATDG-PGLVFQVYPEAVATLPASNVWS 605 (830)
Q Consensus 528 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~-~~~~~~~g-~gl~fi~~~~~~~~~p~~~~~~ 605 (830)
|..||+.++++.|+++|++||++||+.+||++ +++| +++++++| |||+|++||+++++||++++|+
T Consensus 274 ----------n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a--~g~~~~~~v~~~G~pgL~Fi~~P~af~~mp~g~~~~ 341 (519)
T 2a65_A 274 ----------DIVLSGLTAATLNEKAEVILGGSISIPAAVAF--FGVANAVAIAKAGAFNLGFITLPAIFSQTAGGTFLG 341 (519)
T ss_dssp ----------CCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH--HCHHHHHHHHHHCSSHHHHTHHHHHHTTSTTHHHHH
T ss_pred ----------ChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCCcchHHHhcCCCCceeHHHHHHHHHhCCCccchH
Confidence 99999999999999999999999999999987 6777 66777889 9999999999999999999999
Q ss_pred HHHHHHHHHHhhhcCCccc-ceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeeeccccccccccceeeeccc
Q psy15483 606 MLFFFMLIMLGIDSAVSRK-PVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGG 684 (830)
Q Consensus 606 ~~ff~~l~~~g~~s~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mvt~~G~y~~~igW 684 (830)
++||+||+++|+||+++++ ++++.+.|+++. +|+..+.
T Consensus 342 ~lFF~~l~~agltS~i~~~E~~vt~l~D~~~~-----------------------~R~~~~~------------------ 380 (519)
T 2a65_A 342 FLWFFLLFFAGLTSSIAIMQPMIAFLEDELKL-----------------------SRKHAVL------------------ 380 (519)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCC-----------------------CHHHHHH------------------
T ss_pred HHHHHHHHHHHHHHHHHHhhHhHHHHHHhhCC-----------------------cHHHHHH------------------
Confidence 9999999999999999999 999999999873 1111111
Q ss_pred EEeeccceeeeeeeeeeeeccccccCCccCChhHHHHHHHHHHhhhhHHHHHHHHHHhhCCCccccCceeeeeccCcCCc
Q psy15483 685 VIVSGTVKSRGVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA 764 (830)
Q Consensus 685 ~~itPli~ll~ili~slv~~~pl~y~~y~YP~Wa~~iGw~l~l~sil~IPi~ai~~l~~~~gt~~er~~~~~~p~D~~~~ 764 (830)
.+ + .++++ +.+|.. +++ ++ ++..|++.+
T Consensus 381 -----~v-~--------------------------~~~fl------lgl~~~-------~~~----~g---~~~~D~~~~ 408 (519)
T 2a65_A 381 -----WT-A--------------------------AIVFF------SAHLVM-------FLN----KS---LDEMDFWAG 408 (519)
T ss_dssp -----HH-H--------------------------HHHHH------HHHHHH-------HBT----TH---HHHHHHHTT
T ss_pred -----HH-H--------------------------HHHHH------HHHHHH-------cCC----CC---cchHHHHHh
Confidence 00 0 01111 112221 111 12 899999999
Q ss_pred hhHHHHHHHHhheeEeeecccchhccccch--------heeeeeehhhhhhhhheeeccccCc
Q psy15483 765 GISLLCSALFESVAVSWFYGKSRGSSQQHK--------VQVKSVKYLIELEKHIITISRCRDN 819 (830)
Q Consensus 765 ~~~ll~ial~e~i~VgWiYG~~rf~~~~~~--------~~~~~~~y~~Pl~~~~~~~~~~~~~ 819 (830)
++.+|+++++|+++++|+||.+|+.+|.++ .|+..+||++|+...++++....+.
T Consensus 409 ~~~l~~~~l~~~i~v~wv~g~~~~~~~i~~~~~~~~~~~w~~~~~~v~P~~l~~i~~~~~~~~ 471 (519)
T 2a65_A 409 TIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKVPRIYYYVMRYITPAFLAVLLVVWAREY 471 (519)
T ss_dssp THHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCSSCCCTHHHHHHHTHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhhheeeehhHHHHHHHcccCCchHHHHHHeEEehHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999998763 4667789999999999998766543
No 2
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ...
Probab=99.75 E-value=1.1e-20 Score=217.26 Aligned_cols=308 Identities=10% Similarity=0.044 Sum_probs=198.5
Q ss_pred chhHHHHHHHHHHHHhhheeeeccccccccccccccccceeeehhhhhHH-HHhhheeec-----------ccCc-----
Q psy15483 230 YPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYV-VLTILLIRG-----------LMLP----- 292 (830)
Q Consensus 230 ~i~w~l~l~~ll~~~iv~~gv~kGIk~~~~~~~~~~~~Kv~~~~~lmP~v-lliiL~irs-----------ltLp----- 292 (830)
.+..+++++|+++++++++|++||+|+..+.. +-....+-.+ +.-.+..-+ +.-|
T Consensus 167 ~~~~~~~~~w~i~~~ii~~Gv~kgiek~~~~~--------mp~l~vlliiL~ir~ltLpGp~~~A~~Gl~~~~~Pd~s~L 238 (519)
T 2a65_A 167 FAYIVFLITMFINVSILIRGISKGIERFAKIA--------MPTLFILAVFLVIRVFLLETPNGTAADGLNFLWTPDFEKL 238 (519)
T ss_dssp HHHHHHHHHHHHHHHHHTTCTTTTHHHHHHHH--------HHHHHHHHHHHHHHHTTCEETTEEHHHHHHHHHSCCTTST
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHH--------HHHHHHHHHHHHHHHhcCCCCchhHHHHHHHHhcCCHHHh
Confidence 34566788999999999999999999864321 1122222221 111111111 1112
Q ss_pred ----chhhhHhhhcccCCCCCCCCcccccccccccceeeeeccccCeeeeeecchhHHHHHHHHHHhccccchhhhhhhc
Q psy15483 293 ----GALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPTFISFDIISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYY 368 (830)
Q Consensus 293 ----GA~~Gl~flf~~Pd~s~L~~~~vW~aA~gQ~ity~Sy~~~~g~~i~~~~~~p~vil~i~~i~gl~l~~a~~~l~~~ 368 (830)
-..++..+.|- -..-+.|-+++|+||.+++.++...+......+..+.+++|+.+++....+++.
T Consensus 239 ~~~~vw~~A~gQ~FF-----------SLslG~G~~ity~SY~~~~~n~~~~a~~v~~~n~~~sllaG~~IF~~lgf~a~g 307 (519)
T 2a65_A 239 KDPGVWIAAVGQIFF-----------TLSLGFGAIITYASYVRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFG 307 (519)
T ss_dssp TCHHHHHHHHHHHHH-----------HHTTTSSHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHH-----------HhHHHHhHHhhhhcccCCCcChHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 23344444332 122345558999999988888888888888899999999999988765544321
Q ss_pred cccCcccccCccceeeecccccccCC-CceeEeecchhhhcccccccccccccccccccchhhhcccchhHHHHHHHHHH
Q psy15483 369 LQPELSRLKETQVKFISLNYLSVQGN-TGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCF 447 (830)
Q Consensus 369 ~~p~~~~~~~~~~w~~a~~~~~~q~~-~gl~f~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfF~~~ 447 (830)
. |+.++ ..++| +||+|+++|+++++ ||.|++|+++||+|+
T Consensus 308 ~-~~~~~--------------v~~~G~pgL~Fi~~P~af~~------------------------mp~g~~~~~lFF~~l 348 (519)
T 2a65_A 308 V-ANAVA--------------IAKAGAFNLGFITLPAIFSQ------------------------TAGGTFLGFLWFFLL 348 (519)
T ss_dssp H-HHHHH--------------HHHHCSSHHHHTHHHHHHTT------------------------STTHHHHHHHHHHHH
T ss_pred C-cchHH--------------HhcCCCCceeHHHHHHHHHh------------------------CCCccchHHHHHHHH
Confidence 1 10111 12346 99999999999998 999999999999995
Q ss_pred hhccCCCCCCCCCCCccceeeeeeccchhhHHHHhhhhhhhccccCCCCcccceeehhhhhhhhhhhccccccchhhhHh
Q psy15483 448 TWNSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTEL 527 (830)
Q Consensus 448 ~~~~~~~~~~~~~~~~~~~~~~~S~~~~~e~~i~~l~d~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~ 527 (830)
+++ ++.|+++.+|.+++.++|+|+ .+|+.++..+|.+.+.+|+..+++... .
T Consensus 349 ~~a-----------------gltS~i~~~E~~vt~l~D~~~-------~~R~~~~~~v~~~~fllgl~~~~~~~g-~--- 400 (519)
T 2a65_A 349 FFA-----------------GLTSSIAIMQPMIAFLEDELK-------LSRKHAVLWTAAIVFFSAHLVMFLNKS-L--- 400 (519)
T ss_dssp HHH-----------------HHHHHHHHHHHHHHHHHHTSC-------CCHHHHHHHHHHHHHHHHHHHHHBTTH-H---
T ss_pred HHH-----------------HHHHHHHHhhHhHHHHHHhhC-------CcHHHHHHHHHHHHHHHHHHHHcCCCC-c---
Confidence 443 559999999999999999995 356677788888888888877552100 0
Q ss_pred hhhcCCCCCCCceeeeEEEeccchhhccccceEEEEecccccccccCCccccccCCCcEEEehhHHHHHhCCCcchHHHH
Q psy15483 528 QRQDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLPASNVWSML 607 (830)
Q Consensus 528 ~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~if~~~g~~~~~~~~~~~~~~~~g~gl~fi~~~~~~~~~p~~~~~~~~ 607 (830)
+.+...- + -+.+.
T Consensus 401 -----------------------------------------------------------------~~~D~~~-~-~~~l~ 413 (519)
T 2a65_A 401 -----------------------------------------------------------------DEMDFWA-G-TIGVV 413 (519)
T ss_dssp -----------------------------------------------------------------HHHHHHT-T-THHHH
T ss_pred -----------------------------------------------------------------chHHHHH-h-HHHHH
Confidence 0011110 0 02222
Q ss_pred HHHHHHHHhhhcCCcccceeEEeeccccccccccCCCCCCCCCcccccccceeeeeeeeccccccccccceeeecccEEe
Q psy15483 608 FFFMLIMLGIDSAVSRKPVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGGVIV 687 (830)
Q Consensus 608 ff~~l~~~g~~s~~~~~~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~mvt~~G~y~~~igW~~i 687 (830)
+-..+..+.+....+. ++.++++- .|.++....+|+++|+|+
T Consensus 414 ~~~l~~~i~v~wv~g~---------------------------------~~~~~~i~-----~~~~~~~~~~w~~~~~~v 455 (519)
T 2a65_A 414 FFGLTELIIFFWIFGA---------------------------------DKAWEEIN-----RGGIIKVPRIYYYVMRYI 455 (519)
T ss_dssp HHHHHHHHHHHTTSCH---------------------------------HHHHHHHH-----TTCSSCCCTHHHHHHHTH
T ss_pred HHHHHHHHhhheeeeh---------------------------------hHHHHHHH-----cccCCchHHHHHHeEEeh
Confidence 2222233333222221 01111110 012222334788999999
Q ss_pred eccceeeeeeeeeeeeccccccCCccCChhHHHHHHHHHHhhhhH
Q psy15483 688 SGTVKSRGVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILM 732 (830)
Q Consensus 688 tPli~ll~ili~slv~~~pl~y~~y~YP~Wa~~iGw~l~l~sil~ 732 (830)
+|++ +++++++++++++|.+|++|+||.|+ ||++++++++.
T Consensus 456 ~P~~-l~~i~~~~~~~~~~~~y~~y~~~~~~---Gw~~~~~~~i~ 496 (519)
T 2a65_A 456 TPAF-LAVLLVVWAREYIPKIMEETHWTVWI---TRFYIIGLFLF 496 (519)
T ss_dssp HHHH-HHHHHHHHHHHTHHHHHHSSCTTHHH---HHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHHHhCcCCCCCCccCccHH---HHHHHHHHHHH
Confidence 9999 99999999999999999999999995 99999985543
No 3
>3u85_B Histone-lysine N-methyltransferase MLL; menin, MEN1, JUND, ledgf, TPR, transcription, epigeneti cancer; 3.00A {Homo sapiens}
Probab=7.50 E-value=1.1e+02 Score=19.88 Aligned_cols=9 Identities=44% Similarity=0.741 Sum_probs=6.7
Q ss_pred eeecceeee
Q psy15483 87 VWRFPYLCY 95 (830)
Q Consensus 87 iWRFPyl~~ 95 (830)
=||||---+
T Consensus 2 rwrfparpg 10 (21)
T 3u85_B 2 RWRFPARPG 10 (26)
T ss_pred ccccccCCC
Confidence 399997654
No 4
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C
Probab=3.07 E-value=1e+03 Score=25.13 Aligned_cols=66 Identities=14% Similarity=0.071 Sum_probs=35.8
Q ss_pred chhHHHHHHHHhhhcCCceeecceeeeccCceeehHhHHHHHHH-HhHHHHHHHHHHhhccCCCccccc
Q psy15483 69 SNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVF-GAVPLFYMELILGQFNRQGPISVW 136 (830)
Q Consensus 69 sk~~FiLa~iG~AVGLGNiWRFPyl~~~nGGGAFLIpYli~l~~-iGiPll~lElalGQ~~r~g~i~aw 136 (830)
+..+...-.+|..+|.|.+-..+... +++|..-.+.|++..++ ...-+.+.|++- ++.+.|..-.|
T Consensus 9 ~~~~~~~l~~g~~iG~gi~~~~~~~~-~~~G~~~~~~~li~~~~~~~~~~~~~el~~-~~P~~Gg~y~~ 75 (444)
T 3gia_A 9 SLWEAVSMAVGVMIGASIFSIFGVGA-KIAGRNLPETFILSGIYALLVAYSYTKLGA-KIVSNAGPIAF 75 (444)
T ss_dssp CHHHHHHHHHHHHHHHHTTTSHHHHH-HHHGGGHHHHHHHHHHHHHHHHHHHHHHHT-TCCCTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHH-HHhCcHHHHHHHHHHHHHHHHHHHHHHHHh-hCCCCCcHHHh
Confidence 34677777888889988665555544 45555555666555332 222234444432 23334544455
No 5
>2ki0_A DS119; beta-alpha-beta, de novo protein; NMR {Synthetic}
Probab=3.04 E-value=2.1e+02 Score=20.46 Aligned_cols=15 Identities=20% Similarity=0.271 Sum_probs=11.1
Q ss_pred hhhHHHHhhcCCCCC
Q psy15483 9 QFEVRSLKKFGRHLS 23 (830)
Q Consensus 9 ~~~~~~~~~~~~~~~ 23 (830)
.||++.||.+|++-|
T Consensus 14 peelkklkeeakkan 28 (36)
T 2ki0_A 14 PEELKKLKEEAKKAN 28 (36)
T ss_dssp HHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhcc
Confidence 478888888876543
No 6
>3bx6_A Alpha-1-acid glycoprotein; plasma protein, acute phase protein, polymorphism, pyrrolidone carboxylic acid, signaling protei; 1.80A {Homo sapiens} PDB: 3kq0_A 3apu_A* 3apv_A* 3apw_A* 3apx_A*
Probab=2.33 E-value=2.4e+02 Score=27.79 Aligned_cols=16 Identities=6% Similarity=-0.056 Sum_probs=10.1
Q ss_pred cchhhHHHHhhcCCCC
Q psy15483 7 VPQFEVRSLKKFGRHL 22 (830)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (830)
++++.++.|+++++.+
T Consensus 133 ~~~e~le~F~~~~~~~ 148 (192)
T 3bx6_A 133 TTKEQLGEFYEALDCL 148 (192)
T ss_dssp CCTTTTHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHc
Confidence 3456666777776665
No 7
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=2.24 E-value=4e+02 Score=23.70 Aligned_cols=21 Identities=14% Similarity=0.140 Sum_probs=7.3
Q ss_pred eccchhhHHHHhhhhhhhccc
Q psy15483 471 SKMGGLECVITGLMDEFRVYF 491 (830)
Q Consensus 471 S~~~~~e~~i~~l~d~f~~~~ 491 (830)
+....+...+.-+.|.|....
T Consensus 81 ~~fi~lNLfiaVi~~~f~~~~ 101 (112)
T 4f4l_A 81 TTFTVLNLFIGIIVDAMAITK 101 (112)
T ss_dssp HHHHHHHHHTTTC--------
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445566666777776543
No 8
>1rk8_C PYM protein, within the BGCN gene intron protein, CG30176-PA; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: b.72.3.1
Probab=2.17 E-value=4.4e+02 Score=21.51 Aligned_cols=16 Identities=38% Similarity=0.507 Sum_probs=1.5
Q ss_pred cchhhHHHHhhcCCCC
Q psy15483 7 VPQFEVRSLKKFGRHL 22 (830)
Q Consensus 7 ~~~~~~~~~~~~~~~~ 22 (830)
+||||+...+-+++..
T Consensus 34 ~Pqeev~~Y~~k~~~~ 49 (58)
T 1rk8_C 34 VPQEEVPLYESKGKQF 49 (58)
T ss_dssp CC--------------
T ss_pred CCHHHhhhhhhhhhHH
Confidence 6888888887766543
No 9
>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B
Probab=2.03 E-value=8.1e+02 Score=26.97 Aligned_cols=19 Identities=16% Similarity=0.401 Sum_probs=0.0
Q ss_pred cchhhHHHHhhcCCCCCCC
Q psy15483 7 VPQFEVRSLKKFGRHLSSF 25 (830)
Q Consensus 7 ~~~~~~~~~~~~~~~~~~~ 25 (830)
.|.+-.+.+|.+|++..++
T Consensus 9 ~~~~r~~~~k~~~~~~~e~ 27 (529)
T 3tpo_A 9 LPAARLNRFKNKGKDSTEM 27 (529)
T ss_dssp -------------------
T ss_pred CcHHHHHHhccCCCChHHH
Confidence 4677788899888865544
No 10
>1yb3_A Hypothetical protein; structural genomics, protein structure initiative, PSI; 1.60A {Pyrococcus furiosus} SCOP: d.296.1.2
Probab=1.91 E-value=8.4e+02 Score=23.79 Aligned_cols=22 Identities=9% Similarity=0.129 Sum_probs=17.3
Q ss_pred HHHhheeEeeecccchhccccc
Q psy15483 772 ALFESVAVSWFYGKSRGSSQQH 793 (830)
Q Consensus 772 al~e~i~VgWiYG~~rf~~~~~ 793 (830)
.+++..--..+||.+||++|.-
T Consensus 101 ~fl~~f~k~~IYG~ENFL~Dfy 122 (175)
T 1yb3_A 101 DVIRAFEKLFIYGAENFLEDFY 122 (175)
T ss_dssp HHHHHCSEEEEESSCTTTCEEE
T ss_pred HHHHhcchhhhhhHHHHHHHhc
Confidence 4566665799999999998754
Done!