RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy15483
(830 letters)
>gnl|CDD|212066 cd11497, SLC6sbd_SERT-like, Na(+)- and Cl(-)-dependent monoamine
transporters, SERT, NET, DAT1 and related proteins;
solute binding domain. This subgroup represents the
solute-binding domain of transmembrane transporters that
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: NET
which transports norepinephrine, SERT which transports
serotonin, and DAT1 which transports dopamine. These
transporters may play a role in diseases including
depression, anxiety disorders, attention-deficit
hyperactivity disorder, and in the control of human
behavior and emotional states. This subgroup belongs to
the solute carrier 6 (SLC6) transporter family.
Length = 539
Score = 403 bits (1038), Expect = e-132
Identities = 160/247 (64%), Positives = 187/247 (75%), Gaps = 17/247 (6%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETWG ADFLLS+IGFAVDL NVWRFPY+CYKNGGGAFL+PY LML+FG +PLFYMEL
Sbjct: 1 RETWGKKADFLLSVIGFAVDLGNVWRFPYICYKNGGGAFLIPYLLMLIFGGLPLFYMELA 60
Query: 124 LGQFNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ++R G I+VW +ICP+FKGVG+ ++AFYV+FYYN II WALY+LF+S TSELPW
Sbjct: 61 LGQYHRSGCITVWRKICPIFKGVGYAICIIAFYVAFYYNTIIAWALYYLFSSFTSELPWT 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFS-------RAVLEMQWSEGLHDMGYPKWSL 235
+CNN WNTP C D NR N SS S R VLE+Q SEG+ D+G PKW L
Sbjct: 121 SCNNPWNTPNCTDVSNRNNSSSSNGTWTLHSPAEEFFERKVLELQKSEGIDDLGGPKWQL 180
Query: 236 VLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGAL 295
LC+F+V+ ++Y SL+KGVKSSG KVVW TATMPYVVL+ILLIRGL LPGA
Sbjct: 181 ALCLFAVFIIVYFSLWKGVKSSG---------KVVWVTATMPYVVLSILLIRGLTLPGAS 231
Query: 296 TGIAYYL 302
GI YYL
Sbjct: 232 DGIKYYL 238
Score = 150 bits (380), Expect = 3e-38
Identities = 53/82 (64%), Positives = 65/82 (79%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD +ITS +NC TSFFSGFVIF+ LGYM+ KQ + I VAT+GPGLVF VYPEA+ATLP
Sbjct: 283 YRDALITSSINCLTSFFSGFVIFSVLGYMAHKQNVDIEVVATEGPGLVFIVYPEAIATLP 342
Query: 600 ASNVWSMLFFFMLIMLGIDSAV 621
S W+++FF MLI LG+DS
Sbjct: 343 GSTFWAIIFFLMLITLGLDSTF 364
Score = 92.8 bits (231), Expect = 1e-19
Identities = 36/49 (73%), Positives = 40/49 (81%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVVW TATMPYVVL+ILLIRGL LPGA GI YYL P S+LK+ +V
Sbjct: 202 SGKVVWVTATMPYVVLSILLIRGLTLPGASDGIKYYLTPNWSKLKDPKV 250
Score = 80.4 bits (199), Expect = 1e-15
Identities = 33/62 (53%), Positives = 45/62 (72%)
Query: 695 GVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIY 754
+V+FS++ +EPLQY DY YP W+ +GW + SSI+ IPI AI+KLI TPGT KE +Y
Sbjct: 475 FIVIFSLVSYEPLQYQDYVYPYWSTVVGWCITCSSIVCIPIYAIYKLIITPGTFKERIVY 534
Query: 755 MF 756
+
Sbjct: 535 LI 536
Score = 62.7 bits (153), Expect = 5e-10
Identities = 23/44 (52%), Positives = 28/44 (63%)
Query: 747 TLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSRGSS 790
T+ GGIY+ L D Y+AG S+L E+VAVSWFYG R S
Sbjct: 404 TVTYGGIYVVTLLDRYAAGTSILFVVFLEAVAVSWFYGVDRFSD 447
Score = 47.7 bits (114), Expect = 2e-05
Identities = 20/49 (40%), Positives = 25/49 (51%), Gaps = 3/49 (6%)
Query: 471 SKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTP 519
S GGLE VITGL DEF RE+F + + F +A+ VT
Sbjct: 362 STFGGLEAVITGLCDEFPPVLGKR---RELFVLGVVIICFLLALPTVTY 407
>gnl|CDD|212094 cd11556, SLC6sbd_SERT-like_u1, uncharacterized subgroup of the
SERT-like Na(+)- and Cl(-)-dependent monoamine
transporter subfamily; solute binding domain. SERT-like
Na(+)- and Cl(-)-dependent monoamine transporters,
transport monoamine neurotransmitters from synaptic
spaces into presynaptic neurons. Members include: the
norepinephrine transporter NET, the serotonin
transporter SERT , and the dopamine transporter DAT1.
These latter may play a role in diseases or disorders
including depression, anxiety disorders, and
attention-deficit hyperactivity disorder, and in the
control of human behavior and emotional states. They
belongs to the solute carrier 6 (SLC6) transporter
family. Members of this subgroup are uncharacterized.
Length = 552
Score = 324 bits (831), Expect = e-101
Identities = 142/261 (54%), Positives = 175/261 (67%), Gaps = 31/261 (11%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETW DFLLS+IGFAVDLANVWRFPYLCYKNGGGAFL+PY +MLV G +PLFYMEL
Sbjct: 1 RETWSKKVDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLIPYGIMLVVGGIPLFYMELA 60
Query: 124 LGQFNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ+ R+G I+ W RICPLFKG+G+ VL+AFYV F+YNVII W+LY+ FAS T LPW
Sbjct: 61 LGQYYRKGAITSWGRICPLFKGIGYAVVLIAFYVDFFYNVIIAWSLYYFFASFTFNLPWT 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYD---------------------FSRAVLEMQW 221
+CNN+WNTP C + + +G+ F R VLE+
Sbjct: 121 SCNNSWNTPNCYEPHWSEDGTVPCRSANQSFSATNISAAEENFTSAALEYFERGVLELHV 180
Query: 222 SEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVL 281
S G+ D+G +W ++LC+F+VY + Y SL+KG+ +SG KVVW TA PYVVL
Sbjct: 181 SRGVTDLGNIRWQILLCLFAVYLICYFSLWKGIHTSG---------KVVWFTALFPYVVL 231
Query: 282 TILLIRGLMLPGALTGIAYYL 302
ILLIRG+ LPG+ GI YYL
Sbjct: 232 FILLIRGVTLPGSQNGIEYYL 252
Score = 120 bits (303), Expect = 2e-28
Identities = 49/81 (60%), Positives = 64/81 (79%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD ++TS +NC TSF SGFVIF+ LGYM+ + PI VAT+GPGLVF VYPEA++T+P
Sbjct: 297 YRDALVTSSINCLTSFLSGFVIFSVLGYMACRSGKPIEDVATEGPGLVFVVYPEALSTMP 356
Query: 600 ASNVWSMLFFFMLIMLGIDSA 620
S WS+LFF ML+ LG+DS+
Sbjct: 357 GSTFWSLLFFLMLMTLGLDSS 377
Score = 74.8 bits (184), Expect = 7e-14
Identities = 28/56 (50%), Positives = 40/56 (71%)
Query: 695 GVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
+ + +I ++PL Y+DY+YP WA +GW A SSI MIPIVAI++++ TPGT E
Sbjct: 488 FNITYGLINYQPLTYDDYTYPTWANVLGWIFAGSSISMIPIVAIYQILNTPGTFIE 543
Score = 71.7 bits (176), Expect = 7e-13
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVVW TA PYVVL ILLIRG+ LPG+ GI YYL+P LK +V
Sbjct: 216 SGKVVWFTALFPYVVLFILLIRGVTLPGSQNGIEYYLRPNFEALKSAEV 264
Score = 53.6 bits (129), Expect = 3e-07
Identities = 24/38 (63%), Positives = 29/38 (76%)
Query: 750 EGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
+GGIY FHL D Y+AG S+L + LFE+VAVSW YG R
Sbjct: 420 QGGIYFFHLLDRYAAGYSILIAVLFEAVAVSWIYGLDR 457
Score = 31.7 bits (72), Expect = 1.7
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
Query: 469 LYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVT 518
L S GG E +IT L DEF + + RE+F C A F + + T
Sbjct: 374 LDSSFGGSEAIITALSDEFPIIKRH----RELFVGCLFAFYFVIGLAMCT 419
>gnl|CDD|212082 cd11513, SLC6sbd_SERT, Na(+)- and Cl(-)-dependent serotonin
transporter SERT; solute-binding domain. SERT (also
called 5-HTT), is a transmembrane transporter that
transports the neurotransmitter serotonin from synaptic
spaces into presynaptic neurons. The antiport of a K+
ion is believed to follow the transport of serotonin and
promote the reorientation of SERT for another transport
cycle. Human SERT is encoded by the SLC6A4 gene. SERT is
expressed in brain, peripheral nervous system, placenta,
epithelium, and platelets. SERT may play a role in
diseases or disorders including anxiety, depression,
autism, gastrointestinal disorders, premature
ejaculation, and obesity. It may also have a role in
social cognition. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 537
Score = 319 bits (819), Expect = 1e-99
Identities = 134/246 (54%), Positives = 177/246 (71%), Gaps = 16/246 (6%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETWG DFLLS+IGFAVDL NVWRFPY+CY+NGGGAFL+PYTLM +FG +PLFYMEL
Sbjct: 1 RETWGKKMDFLLSVIGFAVDLGNVWRFPYICYQNGGGAFLIPYTLMAIFGGIPLFYMELA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ++R G IS+WR ICP+FKG+G+ ++A YV+ YYN II WALY+L +S + LPW
Sbjct: 61 LGQYHRTGCISIWRKICPIFKGIGYAICIIALYVASYYNTIIAWALYYLISSFATTLPWT 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYD-----FSRAVLEMQWSEGLHDMGYPKWSLVL 237
+C+N+WNT C + + + N ++T + ++R VL++ S GL D+G W L L
Sbjct: 121 SCDNSWNTGNCTNYFAKDN-ITWTLHSTSPAEEFYTRHVLQVHRSTGLGDLGGISWQLAL 179
Query: 238 CVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTG 297
C+F ++ ++Y S++KGVK+SG KVVW TAT PY+VL ILLIRG LPGA G
Sbjct: 180 CLFLIFTIVYFSIWKGVKTSG---------KVVWVTATFPYIVLFILLIRGATLPGAWRG 230
Query: 298 IAYYLQ 303
+ YYL+
Sbjct: 231 VVYYLK 236
Score = 140 bits (355), Expect = 4e-35
Identities = 86/256 (33%), Positives = 123/256 (48%), Gaps = 52/256 (20%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATD-GPGLVFQVYPEAVATL 598
++D ++TS+VNC TSF SGFVIFT LGYM+ + + VATD GP L+F Y EA+A +
Sbjct: 280 YQDALVTSVVNCLTSFVSGFVIFTVLGYMAEMRNEDVIEVATDAGPSLLFITYAEAIANM 339
Query: 599 PASNVWSMLFFFMLIMLGIDSAVSRKPVVSGTLKSRVINW-----KTLG-RKEPGSSSYG 652
P S ++++FF M+I LG+DS G L+ + +G R+E
Sbjct: 340 PGSTFFAIIFFLMIITLGLDSTF-------GGLEGVITAVLDEFPHVIGKRREIFVLGLV 392
Query: 653 CF-FSAWLRLLTLSGV----LGSNHGRGGNLLTC--LGGVIVS----------------- 688
F L LT G L + G +LT L + VS
Sbjct: 393 IVCFLGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQFCSDIKEMLG 452
Query: 689 ----------GTVKSRGVVLFSIIF----HEPLQYNDYSYPGWAEWIGWSLALSSILMIP 734
S +LF I+ L+ DY+YP W+ +G+ + +SSI+ IP
Sbjct: 453 FTPGWFWRVCWVAISPLFLLFIIVSFLMNPPQLRLFDYNYPYWSIVVGYCIGMSSIICIP 512
Query: 735 IVAIFKLITTPGTLKE 750
I A++KLI TPG+LKE
Sbjct: 513 IYALYKLIITPGSLKE 528
Score = 79.5 bits (196), Expect = 2e-15
Identities = 70/242 (28%), Positives = 101/242 (41%), Gaps = 50/242 (20%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQVKFISLNYLSVQ 392
SGKVVW TAT PY+VL ILLIRG LPGA G+ YYL+P+ +L ET V V
Sbjct: 199 SGKVVWVTATFPYIVLFILLIRGATLPGAWRGVVYYLKPKWHKLLETGV--------WVD 250
Query: 393 GNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLS----LTPLCWCLVLFPCFT 448
+ P F G + ++C + L S LT V+F
Sbjct: 251 AAAQIFFSLGPGF----GVLLAFSSYNKFHNNCYQDALVTSVVNCLTSFVSGFVIFTVLG 306
Query: 449 WNS------FSDSSTDKGPS----VFGE---------------FVLYSKMG------GLE 477
+ + + +TD GPS + E F++ +G GLE
Sbjct: 307 YMAEMRNEDVIEVATDAGPSLLFITYAEAIANMPGSTFFAIIFFLMIITLGLDSTFGGLE 366
Query: 478 CVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTPVHEHLTELQRQDNLSPSS 537
VIT ++DEF REIF + V F ++ +T ++ +L + P+
Sbjct: 367 GVITAVLDEFP---HVIGKRREIFVLGLVIVCFLGSLATLTFGGAYVVKLLEEYATGPAV 423
Query: 538 IT 539
+T
Sbjct: 424 LT 425
Score = 46.7 bits (111), Expect = 4e-05
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 736 VAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
+ I + + TL GG Y+ L + Y+ G ++L L E++AVSWFYG ++
Sbjct: 391 LVIVCFLGSLATLTFGGAYVVKLLEEYATGPAVLTVVLLEAIAVSWFYGITQ 442
>gnl|CDD|215790 pfam00209, SNF, Sodium:neurotransmitter symporter family.
Length = 506
Score = 314 bits (808), Expect = 2e-98
Identities = 130/240 (54%), Positives = 171/240 (71%), Gaps = 21/240 (8%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETW DFLLS+IGFAV L NVWRFPYLCYKNGGGAFL+PY + L+ +PLF++EL
Sbjct: 1 RETWSGKLDFLLSVIGFAVGLGNVWRFPYLCYKNGGGAFLIPYLIFLITAGIPLFFLELA 60
Query: 124 LGQFNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ+ R+G I VW +ICPLFKG+G+ ++++ FY+ YYNVII WALY+LF+S T+ELPW
Sbjct: 61 LGQYTREGAIGVWRKICPLFKGIGYASMVIVFYIGIYYNVIIAWALYYLFSSFTTELPWA 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSV 242
+CNN+WNTP CE T S + + R VL++ S+G+ D+G +W L LC+
Sbjct: 121 SCNNSWNTPRCEKT------SPVEEF---WERKVLKL--SDGIEDLGGLRWPLTLCLLVA 169
Query: 243 YCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
+ ++Y ++KGVKSSG KVV+ TAT PYVVL +LL+RG+ LPGA GI +YL
Sbjct: 170 WVVVYFCIWKGVKSSG---------KVVYFTATFPYVVLLVLLVRGVTLPGAADGIDFYL 220
Score = 128 bits (323), Expect = 4e-31
Identities = 47/83 (56%), Positives = 58/83 (69%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD +I S +N TSF +GFVIF+ LG+M+ +Q +PIS VA GPGL F YPEAV LP
Sbjct: 265 YRDALIVSFINSATSFLAGFVIFSVLGFMAQEQGVPISEVAESGPGLAFIAYPEAVTMLP 324
Query: 600 ASNVWSMLFFFMLIMLGIDSAVS 622
S WS+LFF MLI LG+DS
Sbjct: 325 LSPFWSVLFFLMLITLGLDSQFG 347
Score = 78.5 bits (194), Expect = 5e-15
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PYVVL +LL+RG+ LPGA GI +YL P+ S+L + QV
Sbjct: 184 SGKVVYFTATFPYVVLLVLLVRGVTLPGAADGIDFYLTPDWSKLLDPQV 232
Score = 67.3 bits (165), Expect = 1e-11
Identities = 25/50 (50%), Positives = 39/50 (78%)
Query: 695 GVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITT 744
+ +FSI+ ++PL YN+Y YP WA +GW +ALSS+L IP+ +I+KL++T
Sbjct: 457 FLFIFSIVQYKPLTYNNYVYPNWANALGWLMALSSMLCIPLYSIYKLLST 506
Score = 54.2 bits (131), Expect = 2e-07
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 731 LMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
L IV + + + EGGIY+F LFD Y+A LL FE +AV+W YG R
Sbjct: 370 LFTLIVCVISFLIGLILVTEGGIYVFTLFDYYAASFGLLFVVFFECIAVAWVYGLDR 426
Score = 40.7 bits (96), Expect = 0.003
Identities = 20/50 (40%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 469 LYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVT 518
L S+ GG+E +IT L+DEF + + RE+FT +SF + +I VT
Sbjct: 342 LDSQFGGVEGIITALVDEFPILLRK---RRELFTLIVCVISFLIGLILVT 388
>gnl|CDD|212083 cd11514, SLC6sbd_DAT1, Na(+)- and Cl(-)-dependent dopamine
transporter 1; solute-binding domain. DAT1 (also called
DAT), is a plasma membrane transport protein that
functions at the dopaminergic synapses to transport
dopamine from the extracellular space back into the
presynaptic nerve terminal. Human DAT1 is encoded by the
SLC6A3 gene, and is expressed in the brain. DAT1 may
play a role in diseases or disorders related to
dopaminergic neurons, including attention-deficit
hyperactivity disorder (ADHD), Tourette syndrome,
Parkinson's disease, alcoholism, drug abuse,
schizophrenia, extraversion, and risky behavior. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 555
Score = 313 bits (804), Expect = 3e-97
Identities = 146/248 (58%), Positives = 176/248 (70%), Gaps = 18/248 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETWG DFLLS+IGFAVDLANVWRFPYLCYKNGGGAFLVPY +V +PLFYMEL
Sbjct: 1 RETWGKKIDFLLSVIGFAVDLANVWRFPYLCYKNGGGAFLVPYLFFMVIAGMPLFYMELA 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQFNR+G VW+ICP+FKGVGF +L++ YV F+YNVII WAL++LF+S T ELPW++
Sbjct: 61 LGQFNREGAAGVWKICPIFKGVGFTVILISLYVGFFYNVIIAWALFYLFSSFTGELPWIH 120
Query: 184 CNNTWNTPLCEDT-YNRTNGSSF--------TFYHYDFSRAVLEMQWSEGLHDMGYPKWS 234
CNN+WN+P C D ++G S T F R VL + S G+HD+G P+W
Sbjct: 121 CNNSWNSPNCSDAHPGDSSGDSSGLNDTYKTTPAAEYFERGVLHLHESHGIHDLGPPRWQ 180
Query: 235 LVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGA 294
L C+ V +LY SL+KGVK+SG KVVW TATMPYVVLT LL+RG+ LPGA
Sbjct: 181 LTSCLVVVIVLLYFSLWKGVKTSG---------KVVWITATMPYVVLTALLLRGVTLPGA 231
Query: 295 LTGIAYYL 302
+ GI YL
Sbjct: 232 IDGIKAYL 239
Score = 121 bits (306), Expect = 7e-29
Identities = 51/82 (62%), Positives = 68/82 (82%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD IIT+ +N TSFFSGFV+F++LGYM+ K +PI VA DGPGL+F +YPEA+ATLP
Sbjct: 284 YRDAIITTSINSLTSFFSGFVVFSFLGYMAQKHNVPIGDVAKDGPGLIFIIYPEAIATLP 343
Query: 600 ASNVWSMLFFFMLIMLGIDSAV 621
S+VW+++FF ML+ LGIDSA+
Sbjct: 344 LSSVWAVIFFIMLLTLGIDSAM 365
Score = 66.9 bits (163), Expect = 2e-11
Identities = 32/49 (65%), Positives = 36/49 (73%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVVW TATMPYVVLT LL+RG+ LPGA+ GI YL + RL E V
Sbjct: 203 SGKVVWITATMPYVVLTALLLRGVTLPGAIDGIKAYLSVDFLRLCEASV 251
Score = 55.7 bits (134), Expect = 7e-08
Identities = 24/55 (43%), Positives = 37/55 (67%)
Query: 696 VVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
VV+ SI+ P +Y Y +P WA +GW LA+SS+ M+P+ AI+K + PG+ +E
Sbjct: 476 VVVVSIVTFRPPKYGSYIFPDWANMVGWCLAISSMAMVPLYAIYKFCSLPGSFRE 530
Score = 44.9 bits (106), Expect = 2e-04
Identities = 19/39 (48%), Positives = 27/39 (69%)
Query: 751 GGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSRGS 789
GGIY+F L D ++AG S+L L E++ ++WFYG R S
Sbjct: 408 GGIYVFTLLDHFAAGTSILFGVLIEAIGIAWFYGVGRFS 446
Score = 39.1 bits (91), Expect = 0.010
Identities = 20/48 (41%), Positives = 30/48 (62%), Gaps = 4/48 (8%)
Query: 471 SKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVT 518
S MGG+E VITGL+DEF+ + RE+FT + +F +++ VT
Sbjct: 363 SAMGGMESVITGLIDEFKFLHR----HRELFTLFIVLSTFLISLFCVT 406
>gnl|CDD|212081 cd11512, SLC6sbd_NET, Na(+)- and Cl(-)-dependent norepinephrine
transporter NET; solute-binding domain. NET (also
called NAT1, NET1), is a transmembrane transporter that
transports the neurotransmitter norepinephrine from
synaptic spaces into presynaptic neurons. Human NET is
encoded by the SLC6A2 gene. NET is expressed in brain,
peripheral nervous system, adrenal gland, and placenta.
NET may play a role in diseases or disorders including
depression, orthostatic intolerance, anorexia nervosa,
cardiovascular diseases, alcoholism, and
attention-deficit hyperactivity disorder. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 560
Score = 309 bits (794), Expect = 1e-95
Identities = 145/250 (58%), Positives = 178/250 (71%), Gaps = 19/250 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETWG DFLLS++GFAVDLANVWRFPYLCYKNGGGAFL+PYTL L+ +PLFYMEL
Sbjct: 1 RETWGKKIDFLLSVVGFAVDLANVWRFPYLCYKNGGGAFLIPYTLFLIIAGMPLFYMELA 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQ+NR+G +VW+ICP FKGVG+ +L+A YV FYYNVII W+LY+LF+S TSELPW
Sbjct: 61 LGQYNREGAATVWKICPCFKGVGYAVILIALYVGFYYNVIIAWSLYYLFSSFTSELPWTT 120
Query: 184 CNNTWNTPLCEDT--YNRT---NGSSFTFYHYD-----FSRAVLEMQWSEGLHDMGYPKW 233
C N WN+P C D N + NG+ ++ Y + R VL + S G+HD+G P+W
Sbjct: 121 CGNVWNSPNCTDPKLLNASVLGNGTKYSKYKLTPAAEFYERGVLHLHESAGIHDLGLPRW 180
Query: 234 SLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPG 293
L LC+F V +L+ SL+KGVK+SG KVVW TAT+PYVVL +LLI G+ LPG
Sbjct: 181 QLTLCLFVVVIVLFFSLWKGVKTSG---------KVVWITATLPYVVLFVLLIHGVTLPG 231
Query: 294 ALTGIAYYLQ 303
A GI YL
Sbjct: 232 AFNGINAYLH 241
Score = 104 bits (261), Expect = 3e-23
Identities = 45/82 (54%), Positives = 63/82 (76%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD ++TS +NC TSF SGF IF+ LGYM+ + K+ I VAT+G GLVF +YPEA++TL
Sbjct: 285 YRDALLTSTINCVTSFISGFAIFSILGYMAHEHKVKIEDVATEGAGLVFILYPEAISTLS 344
Query: 600 ASNVWSMLFFFMLIMLGIDSAV 621
S W+++FF ML+ LGIDS++
Sbjct: 345 GSTFWAVVFFIMLLTLGIDSSM 366
Score = 74.6 bits (183), Expect = 9e-14
Identities = 29/55 (52%), Positives = 40/55 (72%)
Query: 696 VVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
VV+ SII +PL Y+DY++P WA GW +ALSS+L++PI I+K T PGT +E
Sbjct: 477 VVIVSIINFKPLTYDDYNFPPWANRTGWGIALSSMLLVPIYVIYKFFTVPGTFEE 531
Score = 64.2 bits (156), Expect = 2e-10
Identities = 31/49 (63%), Positives = 35/49 (71%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVVW TAT+PYVVL +LLI G+ LPGA GI YL + RLKE V
Sbjct: 204 SGKVVWITATLPYVVLFVLLIHGVTLPGAFNGINAYLHIDFKRLKEATV 252
Score = 48.0 bits (114), Expect = 2e-05
Identities = 21/42 (50%), Positives = 29/42 (69%)
Query: 748 LKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSRGS 789
+ GGIY+ L DT++AG S+L + L E++ VSWFYG R S
Sbjct: 406 ITNGGIYVLTLLDTFAAGTSILFAVLMEAIGVSWFYGVDRFS 447
Score = 33.0 bits (75), Expect = 0.65
Identities = 19/48 (39%), Positives = 29/48 (60%), Gaps = 4/48 (8%)
Query: 471 SKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVT 518
S MGG+E VITGL D+F + K R++FT ++F +A+ +T
Sbjct: 364 SSMGGMEAVITGLADDFSILKK----HRKLFTFGVAFITFLLALFCIT 407
>gnl|CDD|212065 cd11496, SLC6sbd-TauT-like, Na(+)- and Cl(-)-dependent taurine
transporter TauT, and related proteins; solute-binding
domain. This subgroup represents the solute-binding
domain of TauT-like Na(+)- and Cl(-)-dependent
transporters. Family members include: human TauT which
transports taurine, human GAT1, GAT2, and GAT3, and
BGT1, which transport gamma-aminobutyric acid (GABA),
and human CT1 which transports creatine. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 543
Score = 304 bits (780), Expect = 1e-93
Identities = 119/256 (46%), Positives = 169/256 (66%), Gaps = 19/256 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + DFLLS+ G+A+ L NVWRFPYLCYKNGGGAFL+PY + LV +P+F++E+
Sbjct: 1 RGKWSNKIDFLLSVAGYAIGLGNVWRFPYLCYKNGGGAFLIPYFIFLVLCGIPIFFLEVA 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQ+ QG I+ W+ICPLFKG+G+ + ++ F+++ YY VI+ WAL++LF S TSELPW
Sbjct: 61 LGQYTSQGGITAWKICPLFKGIGYASAVIVFWLNIYYIVILAWALFYLFNSFTSELPWTT 120
Query: 184 CNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQW---------SEGLHDMGYPKWS 234
C+N WNT C +TY+ N S+ T + + + ++ S+G+ D+G +W
Sbjct: 121 CDNWWNTECCVETYSNNNLSNLTKNCSNNTNSTSPVEEFWERRVLGISDGIEDIGSIRWE 180
Query: 235 LVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGA 294
L LC+ + + Y ++KGVKS+G KVV+ TAT PYV+L ILLIRG+ LPGA
Sbjct: 181 LALCLLLAWIICYFCIWKGVKSTG---------KVVYFTATFPYVMLIILLIRGVTLPGA 231
Query: 295 LTGIAYYLQQPAPSSL 310
GI +YL +P + L
Sbjct: 232 SDGIYFYL-KPDLTKL 246
Score = 131 bits (332), Expect = 5e-32
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
++D II +N TSFF+GF IF+ LG+M+ +Q +PIS VA GPGL F YP AV+ LP
Sbjct: 284 YKDSIILCFLNSGTSFFAGFAIFSILGFMAQEQGVPISEVAESGPGLAFIAYPRAVSLLP 343
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
+W++LFF ML++LG+DS
Sbjct: 344 LPQLWAVLFFIMLLLLGLDS 363
Score = 81.1 bits (201), Expect = 8e-16
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ TAT PYV+L ILLIRG+ LPGA GI +YL+P+L++L + QV
Sbjct: 203 TGKVVYFTATFPYVMLIILLIRGVTLPGASDGIYFYLKPDLTKLLDPQV 251
Score = 76.8 bits (190), Expect = 1e-14
Identities = 32/62 (51%), Positives = 42/62 (67%), Gaps = 1/62 (1%)
Query: 690 TVKSRGVVLFSIIFHEPLQYND-YSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTL 748
G+ +FS++ + PL Y + Y YP WAE IGW LALSS+L IP AI+ L+ TPG+L
Sbjct: 474 PAICLGIFVFSLVKYTPLTYGNTYVYPWWAEAIGWFLALSSMLCIPGYAIYILLKTPGSL 533
Query: 749 KE 750
KE
Sbjct: 534 KE 535
Score = 57.2 bits (139), Expect = 2e-08
Identities = 28/60 (46%), Positives = 36/60 (60%), Gaps = 2/60 (3%)
Query: 729 SILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
I + + + LI P + EGGIY+F LFD Y+A GI LL A FE +A+SW YG R
Sbjct: 390 EIFVAIVCLVCFLIGLP-MVTEGGIYVFQLFDYYAASGICLLWLAFFECIAISWVYGADR 448
Score = 37.2 bits (87), Expect = 0.038
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
Query: 475 GLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVT 518
G+E +T ++D + + + REIF V F + + VT
Sbjct: 367 GVEGFVTAIVDLYPNVLR-LRYRREIFVAIVCLVCFLIGLPMVT 409
>gnl|CDD|212069 cd11500, SLC6sbd_PROT, Na(+)- and Cl(-)-dependent L-proline
transporter PROT; solute-binding domain. PROT is a
high-affinity L-proline transporter that transports
L-proline, and may have a role in excitatory
neurotransmission. Human PROT is encoded by the SLC6A7
gene, a potential susceptible gene for asthma. PROT is
expressed in the brain. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 544
Score = 275 bits (706), Expect = 5e-83
Identities = 121/250 (48%), Positives = 160/250 (64%), Gaps = 23/250 (9%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R WG +FLLS IG+ V L NVWRFPYLCY+NGGGAFL+PY +ML F +PLF+MEL
Sbjct: 1 RGQWGGKLEFLLSCIGYCVGLGNVWRFPYLCYRNGGGAFLIPYFIMLAFCGIPLFFMELS 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQ+ GP++VW+ CP+FKG+G+ +LV+ V YYNVII W L++LFAS TS LPW +
Sbjct: 61 LGQYGSLGPLTVWKCCPIFKGIGYGMLLVSGLVCIYYNVIIAWTLFYLFASFTSVLPWEH 120
Query: 184 CNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRA-----------VLEMQWSEGLHDMGYPK 232
C N WNT C + + N + + +R VL +Q S G+ D G +
Sbjct: 121 CGNWWNTESCLEHRVKDNMGALPV---NLTRTVSPSEEYWNRRVLGIQGSSGIGDPGEVR 177
Query: 233 WSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLP 292
W L LC+ + +++ LFKGVKSSG KVV+ TAT PY++L +LL+RG+ L
Sbjct: 178 WELALCLLLAWVIVFFCLFKGVKSSG---------KVVYFTATFPYIILIVLLVRGVTLE 228
Query: 293 GALTGIAYYL 302
GAL GI +YL
Sbjct: 229 GALKGIQFYL 238
Score = 114 bits (286), Expect = 2e-26
Identities = 43/81 (53%), Positives = 57/81 (70%)
Query: 539 TFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATL 598
+RD +I +L NC TS F+GF IF+ LG+M+ + +P+ VA GPGL F YPEA+ L
Sbjct: 282 IYRDTLIITLGNCITSVFAGFAIFSVLGHMAHELGVPVKDVADAGPGLAFVAYPEALTLL 341
Query: 599 PASNVWSMLFFFMLIMLGIDS 619
P S WS+LFFFML+ LG+DS
Sbjct: 342 PVSPFWSILFFFMLLTLGLDS 362
Score = 69.8 bits (171), Expect = 2e-12
Identities = 28/49 (57%), Positives = 37/49 (75%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PY++L +LL+RG+ L GAL GI +YL P+ RL +QV
Sbjct: 202 SGKVVYFTATFPYIILIVLLVRGVTLEGALKGIQFYLTPDFHRLASSQV 250
Score = 60.9 bits (148), Expect = 2e-09
Identities = 23/55 (41%), Positives = 36/55 (65%)
Query: 696 VVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
++++SI+ ++P +Y Y YP WAE +G + L S LMIPI AI ++ G+L E
Sbjct: 476 ILVYSIVKYQPSEYGSYRYPPWAELLGILMGLLSCLMIPIGAIVAILREEGSLWE 530
Score = 45.5 bits (108), Expect = 1e-04
Identities = 18/38 (47%), Positives = 23/38 (60%)
Query: 750 EGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
+GG+Y L D YSA L+ ALF +A+SW YG R
Sbjct: 407 DGGMYWLTLMDWYSASFGLMVLALFMCLAISWVYGIQR 444
>gnl|CDD|212078 cd11509, SLC6sbd_CT1, Na(+)- and Cl(-)-dependent creatine
transporter 1; solute-binding domain. CT1 (also called
CRTR, CRT) transports creatine. Human CT1 is encoded by
the SLC6A8 gene. CT1 is ubiquitously expressed, with
highest levels found in skeletal muscle and kidney.
Creatine is absorbed from food or synthesized from
arginine and plays an important role in energy
metabolism. Deficiency in human CT1 leads to X-linked
cerebral creatine transporter deficiency. In males, this
disorder is characterized by language and speech delays,
autistic-like behavior, seizures in about 50% of cases,
and can also involve midfacial hypoplasia, and short
stature. In females, it is characterized by mild
cognitive impairment with behavior and learning
problems. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 592
Score = 249 bits (637), Expect = 8e-73
Identities = 111/260 (42%), Positives = 161/260 (61%), Gaps = 29/260 (11%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RETW DF++S +GFAV L NVWRFPYLCYKNGGG FL+PY L++ G +P+F++E+
Sbjct: 1 RETWTRQMDFIMSCVGFAVGLGNVWRFPYLCYKNGGGVFLIPYLLIVFVGGIPVFFLEIA 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQF +QG I+ W I PLFKG+G+ ++++ F+ + YY +I+ W LY+L S T+ LPW
Sbjct: 61 LGQFMKQGGINAWNIAPLFKGLGYASMVIVFFCNTYYIMILVWGLYYLVHSFTNTLPWAT 120
Query: 184 CNNTWNTPLC------EDTYNRTNGSSFTFYHYDFSRAVLE--------------MQWSE 223
C + WNT C ED N + +S++ + S L ++ S
Sbjct: 121 CGHPWNTENCTEIFRHEDCANGSLANSWSQTFLNLSCDELANKRSPVIEFWENKVLRLSG 180
Query: 224 GLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTI 283
GL + G W ++LC+ + + ++Y ++KGVKS+G K+V+ TA PYVVL +
Sbjct: 181 GLEEPGALNWEMILCLLATWVIVYFCVWKGVKSTG---------KIVYFTALFPYVVLIV 231
Query: 284 LLIRGLMLPGALTGIAYYLQ 303
LL+ G+ LPGAL GI YYL+
Sbjct: 232 LLVHGVTLPGALDGIIYYLK 251
Score = 99.2 bits (247), Expect = 2e-21
Identities = 42/80 (52%), Positives = 61/80 (76%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD I +L+N TSFF+GFV+F+ LG+M+ +Q + IS+VA GPGL F YP+AV +P
Sbjct: 295 YRDAFILALINSGTSFFAGFVVFSVLGFMASEQGVDISKVAESGPGLAFIAYPKAVTLMP 354
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
+ +W+ LFFFML++LG+DS
Sbjct: 355 VAPLWAALFFFMLLLLGLDS 374
Score = 68.7 bits (168), Expect = 6e-12
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GK+V+ TA PYVVL +LL+ G+ LPGAL GI YYL+P+ S+L E QV
Sbjct: 214 TGKIVYFTALFPYVVLIVLLVHGVTLPGALDGIIYYLKPDWSKLGEAQV 262
Score = 64.1 bits (156), Expect = 2e-10
Identities = 27/57 (47%), Positives = 40/57 (70%), Gaps = 1/57 (1%)
Query: 695 GVVLFSIIFHEPLQYND-YSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
G+ LF ++ ++PL YN Y YP W E IGW+LALSS+L IP+ ++KL+ G+ +E
Sbjct: 490 GIFLFHVVNYKPLTYNKTYVYPWWGEAIGWALALSSMLCIPLTVLYKLLRAKGSFRE 546
Score = 47.6 bits (113), Expect = 2e-05
Identities = 21/39 (53%), Positives = 28/39 (71%), Gaps = 1/39 (2%)
Query: 750 EGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
+GG+Y+F LFD YSA GI+LL A +E V ++W YG R
Sbjct: 421 QGGMYVFQLFDYYSASGITLLWQAFWECVVIAWVYGADR 459
>gnl|CDD|212070 cd11501, SLC6sbd_ATB0, Na(+)- and Cl(-)-dependent beta-alanine
transporter ATB0+; solute-binding domain. ATB0+ (also
known as the beta-alanine carrier) is a transmembrane
transporter with a broad substrate specificity; it can
transport non-alpha-amino acids such as beta-alanine
with low affinity, and can transport dipolar and
cationic amino acids such as leucine and lysine, with a
higher affinity. It may have a role in the absorption of
essential nutrients and drugs in the distal regions of
the human gastrointestinal tract. Human ATB0+ is encoded
by the SLC6A14 gene. ATB0+ is expressed in the lung,
trachea, salivary gland, mammary gland, stomach, and
pituitary gland. ATB0+ may play a role in obesity, and
its upregulation may have a pathogenic role in
colorectal cancer. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 601
Score = 245 bits (627), Expect = 3e-71
Identities = 117/267 (43%), Positives = 150/267 (56%), Gaps = 38/267 (14%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W +D+LLS+IG+AV L NVWRFPYL YKNGGGAFL+PYT+ML +PLF++E
Sbjct: 1 RGNWSKKSDYLLSMIGYAVGLGNVWRFPYLTYKNGGGAFLIPYTIMLALAGLPLFFLECS 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQF GPISVWR PL +GVG VLV+ +VS YYNVII ++LY++FAS S LPW +
Sbjct: 61 LGQFASLGPISVWRAVPLLQGVGITMVLVSTFVSIYYNVIIAYSLYYMFASFQSPLPWSD 120
Query: 184 CNNTWNTPLCEDTYNRTNGSSFT--FYHYDFSRAVLE----------------------- 218
C++ W C + S H + S
Sbjct: 121 CSS-WADENCSTSPITHCNVSLANNGIHENKSWVDSNNLTCINISIIYQPGQLPSEQYWD 179
Query: 219 ---MQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATAT 275
+Q S G+ + G W L LC+ + ++ +LFKG+KSSG KVV+ TA
Sbjct: 180 KVALQRSSGMDETGPIVWYLALCLLLAWIIVGAALFKGIKSSG---------KVVYFTAL 230
Query: 276 MPYVVLTILLIRGLMLPGALTGIAYYL 302
PYVVL ILL+RG L GA GI YY+
Sbjct: 231 FPYVVLLILLVRGATLEGAKDGIEYYI 257
Score = 98.0 bits (244), Expect = 4e-21
Identities = 43/92 (46%), Positives = 59/92 (64%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
F D I+ + NC TS F+GF IF+ LG+M+ K P+S V G L F YPEA+A LP
Sbjct: 304 FSDAIVVCVTNCLTSVFAGFAIFSVLGHMAHVLKKPVSEVVDSGFDLAFIAYPEALAKLP 363
Query: 600 ASNVWSMLFFFMLIMLGIDSAVSRKPVVSGTL 631
S +WS+LFFFML+ LG+DS + ++ T+
Sbjct: 364 ISPLWSILFFFMLLTLGLDSQFAGIETITTTI 395
Score = 62.5 bits (152), Expect = 6e-10
Identities = 29/51 (56%), Positives = 35/51 (68%), Gaps = 2/51 (3%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL--QPELSRLKETQV 381
SGKVV+ TA PYVVL ILL+RG L GA GI YY+ Q L++L E +V
Sbjct: 221 SGKVVYFTALFPYVVLLILLVRGATLEGAKDGIEYYIGSQSNLTKLMEAEV 271
Score = 41.0 bits (96), Expect = 0.003
Identities = 14/36 (38%), Positives = 22/36 (61%)
Query: 752 GIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
GIY +L D + AG +L +A+ E + + W YG +R
Sbjct: 430 GIYWVNLIDHFCAGWGILFAAVLELIGIIWIYGGNR 465
Score = 40.6 bits (95), Expect = 0.003
Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Query: 701 IIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTL 748
+ FH P Y YP W +GW + ++ IPIVA++K+I G +
Sbjct: 506 VTFHSP-TYGSVPYPDWGTALGWCMIAFCLIWIPIVAVYKIIKAKGNI 552
>gnl|CDD|212034 cd10324, SLC6sbd, Solute carrier 6 family, neurotransmitter
transporters; solute-binding domain. This family
represents the solute-binding domain of SLC6 proteins
(also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family). These use sodium and chloride
electrochemical gradients to catalyze the
thermodynamically uphill movement of a variety of
substrates, and include neurotransmitter transporters
(NTTs). The latter are Na+/Cl--dependent plasma membrane
transporters for the monoamine neurotransmitters
serotonin (5-hydroxytryptamine), dopamine, and
norepinephrine, and the amino acid neurotransmitters
GABA and glycine. NTTs are widely expressed in the
mammalian brain, and are involved in regulating
neurotransmitter signaling and homeostasis, through
facilitating the uptake of released neurotransmitters
from the extracellular space into neurons and glial
cells. NTTs are the target of a range of therapeutic
drugs for the treatment of psychiatric diseases, such as
major depression, anxiety disorders, attention deficit
hyperactivity disorder and epilepsy. In addition, they
are the primary targets of cocaine, amphetamines and
other psychostimulants. This family also includes
Drosophila Blot which is expressed primarily in
epithelial tissues of ectodermal origin and in the
nervous system of the embryo and larvae, but in addition
found in the developing oocyte and the freshly laid egg.
A lack or reduction of Blot function during oogenesis
results in early arrest of embryonic development. 12
transmembrane helices (TMs) appears to be common for
eukaryotic and some prokaryotic and archaeal SLC6s, (a
core inverted topology repeat, TM1-5 and TM6-10, plus
TMs11-12; TMs numbered to conform to the SLC6 Aquifex
aeolicus LeuT), although a majority of bacterial, and
some archaeal SLC6s lack TM12, for example the
functional Fusobacterium nucleatum tyrosine transporter
Tyt1.
Length = 417
Score = 238 bits (611), Expect = 8e-71
Identities = 110/239 (46%), Positives = 136/239 (56%), Gaps = 65/239 (27%)
Query: 65 ETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELIL 124
E WGS +FLLS IG+AV L NVWRFPYL Y+NGGGAFL+PY +ML+ +PLF++EL L
Sbjct: 1 EQWGSKLEFLLSCIGYAVGLGNVWRFPYLAYENGGGAFLIPYLIMLLLVGIPLFFLELAL 60
Query: 125 GQFNRQGPIS-VWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
GQ+ +GP+ WRICPLFKGVG+ V+++F V+ YYNVII W LY+LFA
Sbjct: 61 GQYTSRGPVGAFWRICPLFKGVGYAQVVISFLVAIYYNVIIAWTLYYLFA---------- 110
Query: 184 CNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVY 243
SF W L LC+ +
Sbjct: 111 --------------------SF-------------------------INWELALCLLLAW 125
Query: 244 CMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
++YL +FKGVKSSG KVV+ TAT PYVVL ILLIRG+ LPGA GI Y+L
Sbjct: 126 ILVYLCIFKGVKSSG---------KVVYFTATFPYVVLFILLIRGVTLPGAGDGILYFL 175
Score = 122 bits (308), Expect = 1e-29
Identities = 40/83 (48%), Positives = 60/83 (72%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD +I S++N TS +GFVIF+ LG+++ + +P++ V GPGL F VYPEA+A +P
Sbjct: 220 YRDALIVSILNTLTSLLAGFVIFSVLGFLAHELGVPVADVVKGGPGLAFVVYPEAIAKMP 279
Query: 600 ASNVWSMLFFFMLIMLGIDSAVS 622
+WS+LFFFML +LG+DS +
Sbjct: 280 VPQLWSVLFFFMLFLLGLDSQFA 302
Score = 72.2 bits (178), Expect = 3e-13
Identities = 31/50 (62%), Positives = 38/50 (76%)
Query: 332 ISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PYVVL ILLIRG+ LPGA GI Y+L P+ S+L + +V
Sbjct: 138 SSGKVVYFTATFPYVVLFILLIRGVTLPGAGDGILYFLTPDWSKLLDPKV 187
Score = 55.6 bits (135), Expect = 5e-08
Identities = 20/35 (57%), Positives = 25/35 (71%)
Query: 750 EGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYG 784
+GGIY+ L D Y+A SLL ALFE +A+SW YG
Sbjct: 343 QGGIYILDLLDYYAATFSLLVLALFELIAISWIYG 377
Score = 32.9 bits (76), Expect = 0.64
Identities = 12/49 (24%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 471 SKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAVSFSVAMINVTP 519
S+ +E ++T ++DEF K + + T V F + + VT
Sbjct: 299 SQFAIVETIVTAIVDEFPKLRK----RKWLVTLGVCVVGFLLGLPYVTQ 343
>gnl|CDD|212079 cd11510, SLC6sbd_TauT, Na(+)- and Cl(-)-dependent taurine
transporter; solute-binding domain. TauT is a Na(+)-
and Cl(-)-dependent, high-affinity, low-capacity
transporter of taurine and beta-alanine. Human TauT is
encoded by the SLC6A6 gene. TauT is expressed in brain,
retina, liver, kidney, heart, spleen, and pancreas. It
may play a part in the supply of taurine to the
intestinal epithelium and in the between-meal-capture of
taurine. It may also participate in re-absorbing taurine
that has been deconjugated from bile acids in the distal
lumen. Functional TauT protects kidney cells from
nephrotoxicity caused by the chemotherapeutic agent
cisplatin; cisplatin down-regulates TauT in a
p53-dependent manner. In mice, TauT has been shown to be
important for the maintenance of skeletal muscle
function and total exercise capacity. TauT-/- mice
develop additional clinically important diseases, some
of which are characterized by apoptosis, including
vision loss, olfactory dysfunction, and chronic liver
disease. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 542
Score = 242 bits (618), Expect = 1e-70
Identities = 113/249 (45%), Positives = 161/249 (64%), Gaps = 21/249 (8%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE W S DF+LS+ G V L NVWRFPYLCYKNGGGAFL+PY + L G +P+F++E+
Sbjct: 1 REKWASKIDFVLSVAGGFVGLGNVWRFPYLCYKNGGGAFLIPYFIFLFGGGLPVFFLEVA 60
Query: 124 LGQFNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ+ +G I+ W ++CP+F G+G+ ++++ ++ YY VI+ W LY+LF S SELPW
Sbjct: 61 LGQYTSEGGITCWEKLCPIFTGIGYASIVIVSLLNIYYIVILAWGLYYLFQSFQSELPWA 120
Query: 183 NCNNTWNTPLCEDTYNRTN--------GSSFTFYHYDF-SRAVLEMQWSEGLHDMGYPKW 233
+CN +WNTP C + R N ++FT +F R VL + S G+ +G KW
Sbjct: 121 HCNQSWNTPNCVEDTLRKNKTLWASINATNFTSPVTEFWERNVLSL--SSGIEHVGTIKW 178
Query: 234 SLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPG 293
L LC+ V+ + + ++KGVKS+G KVV+ TAT P+++L +LLIRG+ LPG
Sbjct: 179 DLALCLLLVWVICFFCIWKGVKSTG---------KVVYFTATFPFLMLIVLLIRGVTLPG 229
Query: 294 ALTGIAYYL 302
A GI +YL
Sbjct: 230 AAEGIKFYL 238
Score = 97.2 bits (242), Expect = 7e-21
Identities = 39/80 (48%), Positives = 56/80 (70%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RDC++ +N TSF SGF IF+ LG+M+ +Q + I+ VA GPGL F YP+AV +P
Sbjct: 283 YRDCMLLGCLNSGTSFVSGFAIFSVLGFMAQEQGVDIADVAESGPGLAFIAYPKAVTMMP 342
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
W++LFF ML++LG+DS
Sbjct: 343 LPTFWAILFFIMLLLLGLDS 362
Score = 66.8 bits (163), Expect = 3e-11
Identities = 27/49 (55%), Positives = 39/49 (79%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ TAT P+++L +LLIRG+ LPGA GI +YL P+++RL + QV
Sbjct: 202 TGKVVYFTATFPFLMLIVLLIRGVTLPGAAEGIKFYLYPDITRLGDPQV 250
Score = 62.2 bits (151), Expect = 6e-10
Identities = 26/57 (45%), Positives = 39/57 (68%), Gaps = 1/57 (1%)
Query: 695 GVVLFSIIFHEPLQYND-YSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
G +FS++ ++PL YN Y YP WA +GW LALSS++ IP+V + ++I + G L E
Sbjct: 478 GCFIFSLVKYKPLTYNKVYVYPEWAIGLGWVLALSSMICIPMVVVIRIIQSDGPLIE 534
Score = 47.5 bits (113), Expect = 2e-05
Identities = 21/39 (53%), Positives = 27/39 (69%), Gaps = 1/39 (2%)
Query: 750 EGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
EGG+Y+F LFD Y+A G+ LL A FE +AV+W YG
Sbjct: 409 EGGMYVFQLFDYYAASGVCLLWVAFFECIAVAWVYGADN 447
>gnl|CDD|212040 cd10332, SLC6sbd-B0AT-like, System B(0) neutral amino acid
transporter AT1, 2 and 3, and related proteins;
solute-binding domain. This subgroup includes the
solute-binding domain of transmembrane transporters,
which transport, i) neutral amino acids: NTT4 (also
called XT1), SBAT1 (also called B0AT2, v7-3, NTT7-3),
and B0AT1 (also called HND); the human genes encoding
these are SLC6A17, SLC6A15, and SLC6A19 respectively,
ii) glycine: B0AT3 (also called Xtrp2, XT2), iii) imino
acids, such as proline, pipecolate, MeAIB, and
sarcosine: SIT1 (also called XTRP3, XT3, IMINO). The
human genes encoding B0AT3 and SIT1 are SLC6A18 and
SLC6A20 respectively. Transporters in this subgroup may
play a role in disorders including major depression,
Hartnup disorder, increased susceptibility to myocardial
infarction, and iminoglycinuria. This subgroup belongs
to the solute carrier 6 (SLC6) transporter family.
Length = 565
Score = 242 bits (620), Expect = 1e-70
Identities = 105/242 (43%), Positives = 140/242 (57%), Gaps = 25/242 (10%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + FLL+ IG+AV L NVWRFPYLC KNGGGAFL+PY +MLV +PLF++EL
Sbjct: 1 RPAWDNKLQFLLATIGYAVGLGNVWRFPYLCQKNGGGAFLIPYVIMLVLEGIPLFFLELA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ R+G I VW I P G+G + +V+F V+ YYNVII W ++LF S LPW
Sbjct: 61 IGQRLRKGSIGVWNTISPYLGGIGIASCVVSFLVALYYNVIIAWCFFYLFNSFQYPLPWS 120
Query: 183 NC----NNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLC 238
+C N T C S ++ Y R L++ S + + G W + LC
Sbjct: 121 SCPTNGNGTGYVEECA------KSSPTQYFWY---RTTLDI--SPSIDESGGLNWWMTLC 169
Query: 239 VFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGI 298
+ + ++YL + KG+KSSG KVV+ TAT PY+VL I LIRGL L GA G+
Sbjct: 170 LLLAWIIVYLCMIKGIKSSG---------KVVYFTATFPYIVLIIFLIRGLTLKGAGDGL 220
Query: 299 AY 300
+
Sbjct: 221 KH 222
Score = 71.2 bits (175), Expect = 1e-12
Identities = 34/127 (26%), Positives = 49/127 (38%), Gaps = 48/127 (37%)
Query: 541 RDCIITSLVNCFTSFFSGFVIFTYLGYMS-------FKQKIPISRVATD----------- 582
RD ++ SL+NCFTS F+ V+F+ LG+ + I I +
Sbjct: 270 RDAVLVSLINCFTSIFASIVVFSVLGFKATTRYDRCVDSNILILVINFLLNSTEDYVDNY 329
Query: 583 ------------------------------GPGLVFQVYPEAVATLPASNVWSMLFFFML 612
G GL F V+ EA+ P + WS+LFF ML
Sbjct: 330 TAINNVTLTENQTLGLTNCSLEDELDEAVEGTGLAFIVFTEAIVKFPGAPFWSVLFFLML 389
Query: 613 IMLGIDS 619
+ LG+ S
Sbjct: 390 LTLGLGS 396
Score = 65.8 bits (161), Expect = 5e-11
Identities = 26/49 (53%), Positives = 33/49 (67%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PY+VL I LIRGL L GA G+ + P+ +L + QV
Sbjct: 188 SGKVVYFTATFPYIVLIIFLIRGLTLKGAGDGLKHMFTPKFEKLLDPQV 236
Score = 46.5 bits (111), Expect = 5e-05
Identities = 18/36 (50%), Positives = 23/36 (63%)
Query: 752 GIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
G Y +FD+YS + LL ALFE +AVS+ YG R
Sbjct: 442 GNYWVQMFDSYSGTLPLLIIALFEMIAVSYVYGLDR 477
Score = 33.8 bits (78), Expect = 0.47
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 12/58 (20%)
Query: 695 GVVLFSII--FHEPLQYN----------DYSYPGWAEWIGWSLALSSILMIPIVAIFK 740
+++ SI+ +P Y+ YPGW + L L SIL IP+VA+ +
Sbjct: 508 VILVASIVQLVTKPPTYSAWNAELASTESLPYPGWGLAVIILLILLSILPIPVVALLR 565
>gnl|CDD|212080 cd11511, SLC6sbd_BGT1, Na(+)- and Cl(-)-dependent betaine/GABA
transporter-1, and related proteins; solute-binding
domain. BGT1 is a relatively low-affinity transporter
of gamma-aminobutyric acid (GABA), and can also
transport betaine. GABA is the main inhibitory
neurotransmitter within the mammalian CNS. Human BGT1 is
encoded by the SLC6A12 gene, and is similar to mouse
GAT2. Mouse GAT2 plays a role in transporting GABA
across the blood-brain barrier. In addition to being
expressed in cells of the central nervous system, BGT1
is expressed in peripheral tissues, including kidney,
liver, and heart. An association has been shown between
the SLC6A12 gene and the occurrence of
aspirin-intolerant asthma, and BGT1 is a drug target for
antiepileptic drugs. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 541
Score = 238 bits (608), Expect = 3e-69
Identities = 108/247 (43%), Positives = 160/247 (64%), Gaps = 17/247 (6%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + +F+LS+ G + L NVWRFPYLCYKNGGGAFL+PY + L +PLF++E
Sbjct: 2 RGQWRNKMEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYLIFLFTCGIPLFFLETA 61
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ+ QG ++ WR ICP+F+G+G+ + ++ Y++ YY +I+ WAL++LF+S TS LPW
Sbjct: 62 LGQYTSQGGVTAWRKICPIFEGIGYASQVIESYLNVYYIIILSWALFYLFSSFTSVLPWA 121
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLE------MQWSEGLHDMGYPKWSLV 236
CNN WN+ LC D N + + T + + V+E + ++G+H +G +W L
Sbjct: 122 TCNNPWNSDLCVDFLNHSGADNRTPPE-NATSPVMEFWEKRVLGLTDGIHKLGTVRWELA 180
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296
LC+ + + Y ++KGVKS+G KVV+ TAT PY++L ILL+RG+ LPGA
Sbjct: 181 LCLLLAWIICYFCIWKGVKSTG---------KVVYFTATFPYLMLVILLVRGVTLPGAAE 231
Query: 297 GIAYYLQ 303
GI +YL+
Sbjct: 232 GIIFYLK 238
Score = 124 bits (312), Expect = 1e-29
Identities = 87/253 (34%), Positives = 130/253 (51%), Gaps = 43/253 (16%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RDCI+ +N TSF +GF IF+ LG+M+ +Q +PIS VA GPGL F YP AV +P
Sbjct: 282 YRDCIMLCFLNSATSFVAGFAIFSVLGFMAREQGVPISEVAESGPGLAFIAYPTAVTMMP 341
Query: 600 ASNVWSMLFFFMLIMLGIDSA-VSRKPVVSGTLKSRVINWKTLGRKEP------------ 646
S +WS LFF MLI LG+DS V + +V+ ++ ++ GR+E
Sbjct: 342 VSQLWSCLFFLMLIFLGLDSQFVCVESMVTASIDMFPGVFRKKGRRELLILAIAVICYLL 401
Query: 647 -------------------GSSSYGCFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGG--- 684
+S F A ++ + V G+N N+ +G
Sbjct: 402 GLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANRFY-DNIEDMIGYRPW 460
Query: 685 --VIVSGTVKSRGVVL----FSIIFHEPLQYND-YSYPGWAEWIGWSLALSSILMIPIVA 737
+ + V + G+ L FS+I + PL+YN+ Y YP W +GW +ALSS++ IP+ A
Sbjct: 461 PLIKICWLVFTPGLCLAVFLFSLIKYTPLKYNNSYVYPPWGYVLGWLMALSSMVCIPLYA 520
Query: 738 IFKLITTPGTLKE 750
IF L+ T G+LK+
Sbjct: 521 IFILLKTKGSLKQ 533
Score = 68.8 bits (168), Expect = 5e-12
Identities = 30/49 (61%), Positives = 40/49 (81%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ TAT PY++L ILL+RG+ LPGA GI +YL+P+LSRL + QV
Sbjct: 201 TGKVVYFTATFPYLMLVILLVRGVTLPGAAEGIIFYLKPDLSRLADPQV 249
Score = 46.1 bits (109), Expect = 6e-05
Identities = 23/58 (39%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 731 LMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
L+I +A+ + + EGG+Y+F LFD Y+A G LL A+FE + + W YG +R
Sbjct: 389 LLILAIAVICYLLGLLLVTEGGMYIFQLFDYYAASGTCLLFLAIFEVICIGWVYGANR 446
>gnl|CDD|212067 cd11498, SLC6sbd_GlyT1, Na(+)- and Cl(-)-dependent glycine
transporter GlyT1; solute-binding domain. GlyT1 is a
membrane-bound transporter that re-uptakes glycine from
the synaptic cleft. Human GlyT1 is encoded by the SLC6A9
gene. GlyT1 is expressed in brain, pancreas, uterus,
stomach, spleen, liver, and retina. GlyT1 may play a
role in schizophrenia. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 585
Score = 228 bits (582), Expect = 4e-65
Identities = 114/259 (44%), Positives = 152/259 (58%), Gaps = 29/259 (11%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R WG+ +F+L+ +G+AV L NVWRFPYLCY+NGGGAF+ PY +MLVF +PLF+MEL
Sbjct: 17 RGNWGNQIEFVLTSVGYAVGLGNVWRFPYLCYRNGGGAFMFPYFIMLVFCGIPLFFMELS 76
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
GQF QG + VWR+ P+FKGVG+ ++V+ Y+ YYNV+I A Y+ F S T LPW
Sbjct: 77 FGQFASQGCLGVWRVSPMFKGVGYGMMVVSTYIGIYYNVVICIAFYYFFMSMTRVLPWTY 136
Query: 184 CNNTWNTPLCE---DTYNRTNGS----------SFTFYHYDFSRAVLEMQW-------SE 223
CNN WNTP C T + + E W S+
Sbjct: 137 CNNPWNTPDCAGVLSTNRSNATFANMSAVVSNLTELLNRTLKRTSPSEEYWRRYVLNISD 196
Query: 224 GLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTI 283
+ + G + L+ C+ + +++L L +GVKSSG KVV+ TAT PYVVLTI
Sbjct: 197 DIGNFGEVRLPLLGCLGVSWLVVFLCLIRGVKSSG---------KVVYFTATFPYVVLTI 247
Query: 284 LLIRGLMLPGALTGIAYYL 302
L IRG+ L GA++GI YYL
Sbjct: 248 LFIRGITLEGAISGIMYYL 266
Score = 97.7 bits (243), Expect = 5e-21
Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD II S+ NC TS ++GFVIF+ LG+M+ + +S VA GPGL F YPEA+ LP
Sbjct: 311 YRDSIIISITNCATSVYAGFVIFSILGFMANHLGVDVSEVADHGPGLAFVAYPEALTLLP 370
Query: 600 ASNVWSMLFFFMLIMLGI 617
S +WS+LFFFMLI+LG+
Sbjct: 371 ISPLWSLLFFFMLILLGL 388
Score = 63.8 bits (155), Expect = 2e-10
Identities = 29/49 (59%), Positives = 38/49 (77%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PYVVLTIL IRG+ L GA++GI YYL P+ ++ + +V
Sbjct: 230 SGKVVYFTATFPYVVLTILFIRGITLEGAISGIMYYLTPQWDKILDAKV 278
Score = 62.2 bits (151), Expect = 7e-10
Identities = 26/51 (50%), Positives = 39/51 (76%)
Query: 696 VVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPG 746
+++F++I + P+ YNDY YPGWA IG+ +ALSS++ IPI AIFK+ + G
Sbjct: 505 ILIFTVIQYRPITYNDYVYPGWAIVIGFLMALSSVICIPIYAIFKICMSEG 555
>gnl|CDD|212075 cd11506, SLC6sbd_GAT1, Na(+)- and Cl(-)-dependent GABA transporter
1; solute-binding domain. GAT1 transports
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
Human GAT1 is encoded by the SLC6A1 gene. GAT1 is
expressed in brain and peripheral nervous system. The
antiepileptic drug, Tiagabine, inhibits GAT1. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 598
Score = 227 bits (581), Expect = 6e-65
Identities = 115/273 (42%), Positives = 167/273 (61%), Gaps = 16/273 (5%)
Query: 30 EVRLESGTEDKYELYVLNVDSKKSSKQEFEHPDGRETWGSNADFLLSIIGFAVDLANVWR 89
EV DK + V+ V KK+ + PD R+TW DFL+S +G+A+ L NVWR
Sbjct: 15 EVSEAPIANDKPKTLVVKVQKKKT-----DLPD-RDTWKGKFDFLMSCVGYAIGLGNVWR 68
Query: 90 FPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQFNRQGPISVWRICPLFKGVGFCA 149
FPYLC KNGGGAFL+PY L L+F VPLF +E LGQ+ G + VW++ P+FKGVG A
Sbjct: 69 FPYLCGKNGGGAFLIPYFLTLIFAGVPLFLLECSLGQYTSIGGLGVWKLAPMFKGVGLAA 128
Query: 150 VLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYH 209
+++F+++ YY VII WA+Y+L+ S T+ LPW +C+N WNT C Y+ N ++ T
Sbjct: 129 AVLSFWLNIYYIVIIAWAIYYLYNSFTTTLPWKSCDNPWNTDRCFSNYSMANTTNMTSAV 188
Query: 210 YDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKV 269
+F + Q ++GL G +W L + + + ++Y ++KGV +G KV
Sbjct: 189 VEFWERNMH-QMTDGLEKPGQIRWPLAITLAIAWVLVYFCIWKGVGWTG---------KV 238
Query: 270 VWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
V+ +AT PY++L IL RG+ LPGA GI +Y+
Sbjct: 239 VYFSATYPYIMLFILFFRGVTLPGAKEGILFYI 271
Score = 97.7 bits (243), Expect = 6e-21
Identities = 45/80 (56%), Positives = 57/80 (71%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD II +N TS F+GFVIF+ +G+M+ K PI+ VA GPGL F YPEAV LP
Sbjct: 316 YRDSIIVCCINSCTSMFAGFVIFSIVGFMAHVTKRPIADVAASGPGLAFLAYPEAVTQLP 375
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
S +W++LFF ML+MLGIDS
Sbjct: 376 ISPLWAVLFFSMLLMLGIDS 395
Score = 60.0 bits (145), Expect = 3e-09
Identities = 24/49 (48%), Positives = 36/49 (73%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ +AT PY++L IL RG+ LPGA GI +Y+ P S+L +++V
Sbjct: 235 TGKVVYFSATYPYIMLFILFFRGVTLPGAKEGILFYITPNFSKLSDSEV 283
Score = 51.9 bits (124), Expect = 1e-06
Identities = 27/58 (46%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 731 LMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
+ I +V I + + +GGIY+F LFD YSA G+SLL FE V++SWFYG +R
Sbjct: 421 IFIAVVCIVSYLIGLSNITQGGIYVFKLFDYYSASGMSLLFLVFFECVSISWFYGVNR 478
Score = 51.5 bits (123), Expect = 1e-06
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 695 GVVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
GV LFS + PL +Y +P W + +GW +ALSS+++IP + +T G+LK+
Sbjct: 509 GVFLFSAVQMTPLTMGNYVFPKWGQGVGWFMALSSMVLIPGYMAYMFLTLKGSLKQ 564
>gnl|CDD|212076 cd11507, SLC6sbd_GAT2, Na(+)- and Cl(-)-dependent GABA transporter
2; solute-binding domain. This family includes human
GAT2 (hGAT2) which transports gamma-aminobutyric acid
(GABA). GABA is the main inhibitory neurotransmitter
within the mammalian CNS. hGAT2 is encoded by the
SLC6A13 gene, and is similar to mouse GAT-3, and rat
GAT2. hGAT2 is expressed in brain, kidney, lung, and
testis. hGAT2 is a potential drug target for treatment
of epilepsy. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 544
Score = 222 bits (567), Expect = 2e-63
Identities = 106/246 (43%), Positives = 156/246 (63%), Gaps = 18/246 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + +F+LS+ G + L NVWRFPYLCYKNGGGAF +PY + L +P+F++E
Sbjct: 1 RGQWNNKLEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFFIPYLIFLFTCGIPVFFLETA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQ+ QG ++ WR ICPLF+G+G+ + ++ ++FYY +++ WAL++LF S T ELPW
Sbjct: 61 LGQYTSQGGVTCWRKICPLFEGIGYASQVIVALLNFYYIIVLAWALFYLFNSFTWELPWS 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYD------FSRAVLEMQWSEGLHDMGYPKWSLV 236
+CN+TWNT C + R + T + + R VL + S+G+ +G +W L
Sbjct: 121 SCNHTWNTENCVEFQKRNYSVNVTLENATSPVIEFWERRVLRI--SDGIEHIGSLRWELA 178
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296
LC+ + + Y ++KGVKS+G KVV+ TAT PY++L +LLIRG+ LPGA
Sbjct: 179 LCLLLAWVICYFCIWKGVKSTG---------KVVYFTATFPYLMLVVLLIRGVTLPGASL 229
Query: 297 GIAYYL 302
GI +YL
Sbjct: 230 GIQFYL 235
Score = 97.2 bits (242), Expect = 6e-21
Identities = 40/80 (50%), Positives = 57/80 (71%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RDCI +N TSF +GF IF+ LG+M+++Q +PIS VA GPGL F YP AV+ +P
Sbjct: 280 YRDCIALCFLNSGTSFVAGFAIFSILGFMAYEQGVPISEVAESGPGLAFIAYPRAVSMMP 339
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
S +W+ FF M+++LG+DS
Sbjct: 340 FSPLWACFFFIMIVLLGLDS 359
Score = 67.2 bits (164), Expect = 2e-11
Identities = 30/49 (61%), Positives = 39/49 (79%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ TAT PY++L +LLIRG+ LPGA GI +YL P+LSRL + QV
Sbjct: 199 TGKVVYFTATFPYLMLVVLLIRGVTLPGASLGIQFYLYPDLSRLADPQV 247
Score = 57.9 bits (140), Expect = 1e-08
Identities = 30/57 (52%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 695 GVVLFSIIFHEPLQYN-DYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
LFS+I + PL+YN +Y YP W + IGW LALSS++ IP+ I+KL TT G+L+E
Sbjct: 475 ATFLFSLIKYTPLKYNKEYVYPWWGDAIGWLLALSSMVCIPLWIIYKLSTTKGSLRE 531
Score = 49.9 bits (119), Expect = 4e-06
Identities = 25/58 (43%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 731 LMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
L+I V+I + L EGG+Y+F LFD Y+A G+ LL A+FE++ ++W YG R
Sbjct: 387 LLILFVSIVSFLVGLIMLTEGGMYVFQLFDYYAASGMCLLFVAIFETLCIAWVYGADR 444
>gnl|CDD|212068 cd11499, SLC6sbd_GlyT2, Na(+)- and Cl(-)-dependent glycine
transporter GlyT2; solute-binding domain. GlyT2 (also
called NET1) is a membrane-bound transporter that
re-uptakes glycine from the synaptic cleft. Human GlyT2
is encoded by the SLC6A5 gene. GlyT2 is expressed in
brain and spinal cord. GlyT2 may play a role in pain,
and in spasticity. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 606
Score = 220 bits (561), Expect = 5e-62
Identities = 113/275 (41%), Positives = 158/275 (57%), Gaps = 47/275 (17%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + DF+LS++G+AV L NVWRFPYL ++NGGGAFL+PY +ML +P+F++E+
Sbjct: 1 RGNWSNKLDFILSMVGYAVGLGNVWRFPYLAFQNGGGAFLIPYLMMLALAGIPIFFLEVS 60
Query: 124 LGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLN 183
LGQF QGP+SVW+ P +G G ++++ ++ YYN+I+ + L++LFAS LPW +
Sbjct: 61 LGQFASQGPVSVWKAIPALQGCGIAMLIISVLIAIYYNIIMCYTLFYLFASLVEVLPWAS 120
Query: 184 CNNTWNTPLCEDTYN--------------RTNGSSFTFYHYD------------------ 211
CNN WNTP C+D + S+F Y
Sbjct: 121 CNNPWNTPECKDKDKLLLDSCIISDHPKIQIKNSTFCMTAYPNLTMVNFTSVGNKTFVSG 180
Query: 212 ----FSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCMLYLSLFKGVKSSGMKFKESSES 267
F VL++ S G+ G +W L LC+F + ++Y SL KG+KSSG
Sbjct: 181 SEEYFKYNVLKI--SAGIEYPGEIRWPLALCLFLAWVIVYASLAKGIKSSG--------- 229
Query: 268 KVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
KVV+ TAT PYVVL ILLIRG+ LPGA GI Y++
Sbjct: 230 KVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFI 264
Score = 89.6 bits (222), Expect = 2e-18
Identities = 38/80 (47%), Positives = 56/80 (70%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RD +I + N TS F+GFVIF+ +G+M+ + K+ I VA GPG+ F VYPEA+ LP
Sbjct: 309 YRDTLIVTCTNSATSIFAGFVIFSVIGFMAHELKVNIESVADQGPGIAFVVYPEALTRLP 368
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
S W+++FF ML+ LG+D+
Sbjct: 369 LSPFWAIIFFLMLLTLGLDT 388
Score = 60.0 bits (145), Expect = 3e-09
Identities = 29/49 (59%), Positives = 36/49 (73%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKVV+ TAT PYVVL ILLIRG+ LPGA GI Y++ P+ +L + V
Sbjct: 228 SGKVVYFTATFPYVVLVILLIRGVTLPGAGAGIWYFITPKWEKLNDATV 276
Score = 48.4 bits (115), Expect = 1e-05
Identities = 19/55 (34%), Positives = 31/55 (56%)
Query: 696 VVLFSIIFHEPLQYNDYSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
++ FS EP+ Y Y YP W+ +GW + S++ IPI+ + K+ PG+ E
Sbjct: 502 ILCFSFYQWEPMTYGSYHYPNWSMVLGWLMLACSVIWIPIMFVIKMHLAPGSFIE 556
Score = 45.0 bits (106), Expect = 2e-04
Identities = 19/40 (47%), Positives = 27/40 (67%)
Query: 748 LKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
+ +GG+YM L DTY+A SL+ A+FE V +S+ YG R
Sbjct: 431 ITQGGMYMLQLVDTYAASYSLVIIAIFELVGISYIYGLQR 470
>gnl|CDD|212077 cd11508, SLC6sbd_GAT3, Na(+)- and Cl(-)-dependent GABA transporter
3; solute-binding domain. This family includes human
GAT3 (hGAT3) a high-affinity transporter of
gamma-aminobutyric acid (GABA). GABA is the main
inhibitory neurotransmitter within the mammalian CNS.
hGAT3 is encoded by the SLC6A11 gene, and is similar to
mouse GAT4, and rat GAT3/GATB. GAT3 is expressed
primarily in the glia of the brain, and is a potential
drug target for antiepileptic drugs. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 542
Score = 204 bits (520), Expect = 5e-57
Identities = 102/248 (41%), Positives = 154/248 (62%), Gaps = 20/248 (8%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + +F+LS+ G + L NVWRFPYLCYKNGGGAFL+PY + + +P+F++E
Sbjct: 2 RGHWNNKVEFVLSVAGEIIGLGNVWRFPYLCYKNGGGAFLIPYVVFFICCGIPVFFLETA 61
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LGQF +G I+ WR +CPLF+G+G+ ++ +++ YY +I+ WA+++LF T+ELPW
Sbjct: 62 LGQFTSEGGITCWRKVCPLFEGIGYATQVIEAHLNVYYIIILAWAIFYLFNCFTTELPWA 121
Query: 183 NCNNTWNTPLCED-------TYNRTNGSSFTFYHYDF-SRAVLEMQWSEGLHDMGYPKWS 234
C + WNT C + + + + T +F R VL + S+G+ +G +W
Sbjct: 122 TCGHEWNTENCVEFQKLNSSNCSHVSLQNATSPVMEFWERRVLAI--SDGIEHIGNLRWE 179
Query: 235 LVLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGA 294
L LC+ + + + Y ++KG KS+G KVV+ TAT PY++L ILLIRG+ LPGA
Sbjct: 180 LALCLLAAWTICYFCIWKGTKSTG---------KVVYVTATFPYIMLLILLIRGVTLPGA 230
Query: 295 LTGIAYYL 302
GI +YL
Sbjct: 231 SEGIKFYL 238
Score = 95.4 bits (237), Expect = 2e-20
Identities = 42/80 (52%), Positives = 58/80 (72%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+RDCI+ +N TSF +GF IF+ LG+M+++Q +PI+ VA GPGL F YP+AV +P
Sbjct: 283 YRDCIMLCCLNSGTSFVAGFAIFSVLGFMAYEQGVPIAEVAESGPGLAFIAYPKAVTMMP 342
Query: 600 ASNVWSMLFFFMLIMLGIDS 619
S +W+ LFF MLI LG+DS
Sbjct: 343 LSPLWATLFFMMLIFLGLDS 362
Score = 64.6 bits (157), Expect = 1e-10
Identities = 31/49 (63%), Positives = 39/49 (79%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKVV+ TAT PY++L ILLIRG+ LPGA GI +YL P+LSRL + QV
Sbjct: 202 TGKVVYVTATFPYIMLLILLIRGVTLPGASEGIKFYLYPDLSRLSDPQV 250
Score = 57.3 bits (138), Expect = 2e-08
Identities = 24/57 (42%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 695 GVVLFSIIFHEPLQYND-YSYPGWAEWIGWSLALSSILMIPIVAIFKLITTPGTLKE 750
G+ +F ++ ++PL+YN+ Y+YP W IGW +ALSS++ IP+ K+ T GT E
Sbjct: 478 GIFIFFLVKYKPLKYNNVYTYPDWGYGIGWLMALSSMICIPLWICIKMWKTEGTFPE 534
Score = 46.1 bits (109), Expect = 7e-05
Identities = 24/58 (41%), Positives = 36/58 (62%), Gaps = 1/58 (1%)
Query: 731 LMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSA-GISLLCSALFESVAVSWFYGKSR 787
L+I ++I L EGG+Y+F LFD+Y+A G+ LL A+FE + + W YG +R
Sbjct: 390 LLILALSIVSYFLGLVMLTEGGMYIFQLFDSYAASGMCLLFVAIFECICIGWVYGSNR 447
>gnl|CDD|212087 cd11518, SLC6sbd_SIT1, Na(+)- and Cl(-)-dependent imino acid
transporter SIT1; solute-binding domain. SIT1 (also
called XTRP3, XT3, IMINO) transports imino acids, such
as proline, pipecolate, MeAIB, and sarcosine. It has
weak affinity for neutral amino acids such as
phenylalanine. Human SIT1 is encoded by the SLC6A20
gene. SIT1 is expressed in brain, kidney, small
intestine, thymus, spleen, ovary, and lung. SLC6A20 is a
candidate gene for the rare disorder iminoglycinuria.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 576
Score = 196 bits (499), Expect = 8e-54
Identities = 99/244 (40%), Positives = 138/244 (56%), Gaps = 25/244 (10%)
Query: 62 DGRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYME 121
R W + F+ + I +AV L NVWRFPYLC GGG FL+PY +ML+ +PL Y+E
Sbjct: 2 KARPLWDNPLQFVFACISYAVGLGNVWRFPYLCQMYGGGGFLIPYLIMLILEGMPLLYLE 61
Query: 122 LILGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELP 180
L +GQ RQG I W+ I P GVG +V+V+F++S YYNVI WA ++LF S LP
Sbjct: 62 LAVGQRMRQGSIGAWKSISPYLGGVGVASVVVSFFLSMYYNVINAWAFWYLFHSFQDPLP 121
Query: 181 WLNC----NNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLV 236
W C N T T CE + + + + +Y R L + S + + G +W
Sbjct: 122 WSVCPLNSNRTGYTEECE----KASPTQYFWY-----RETLNI--SPSIEESGGIQWEQA 170
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296
LC+ + ++YL + +G +S+G KVV+ TAT+PY+VL I LIRGL L GA
Sbjct: 171 LCLILAWLVVYLCILRGTESTG---------KVVYVTATLPYLVLIIYLIRGLTLHGAAN 221
Query: 297 GIAY 300
G+ Y
Sbjct: 222 GLKY 225
Score = 56.4 bits (136), Expect = 4e-08
Identities = 25/44 (56%), Positives = 32/44 (72%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRL 376
+GKVV+ TAT+PY+VL I LIRGL L GA G+ Y P+L +L
Sbjct: 191 TGKVVYVTATLPYLVLIIYLIRGLTLHGAANGLKYMFTPKLEQL 234
Score = 51.4 bits (123), Expect = 1e-06
Identities = 22/40 (55%), Positives = 28/40 (70%)
Query: 580 ATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDS 619
A G GL F VY EA+ + S +WS+L+FFML+MLGI S
Sbjct: 366 AVQGTGLAFIVYSEAIKNMEVSQLWSVLYFFMLLMLGIGS 405
Score = 37.9 bits (88), Expect = 0.026
Identities = 19/53 (35%), Positives = 27/53 (50%)
Query: 735 IVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
+V I E G Y F +F+ Y+A +SLL L E++AV + YG R
Sbjct: 435 LVCFINCIIGLVFTMEAGNYWFDIFNDYAATLSLLLIVLVETIAVCYVYGLRR 487
>gnl|CDD|212086 cd11517, SLC6sbd_B0AT3, glycine transporter, B0AT3; solute-binding
domain. B0AT3 (also called Xtrp2, XT2) transports
glycine. Human B0AT3 is encoded by the SLC6A18 gene.
B0AT3 is expressed in the kidney. Mutations in the
SLC6A18 gene may contribute to the autosomal recessive
disorder iminoglycinuria and its related disorder
hyperglycinuria. SLC6A18 or its neighboring genes are
associated with increased susceptibility to myocardial
infarction. This subgroup belongs to the solute carrier
6 (SLC6) transporter family.
Length = 576
Score = 193 bits (493), Expect = 5e-53
Identities = 103/240 (42%), Positives = 141/240 (58%), Gaps = 19/240 (7%)
Query: 63 GRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMEL 122
R W + A +LLS IGFAV L N+WRFPYLC GGGAFL+PY + LVF +PLF++EL
Sbjct: 1 ERPKWDNKAQYLLSCIGFAVGLGNIWRFPYLCQTYGGGAFLIPYFIALVFEGIPLFHLEL 60
Query: 123 ILGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPW 181
+GQ R+G I VW I P GVG V V+F VS YYN I+ W L++ S LPW
Sbjct: 61 AIGQRLRKGSIGVWTTISPYLGGVGLGCVTVSFLVSLYYNTILAWVLWYFLNSFQHPLPW 120
Query: 182 LNCNNTWN-TPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVF 240
+C N T E+ T S F + R L + + ++D G +W L+LC+
Sbjct: 121 SSCPLDLNRTGFVEECQGSTAVSYFWY------RQTLNI--TPDINDSGSIQWWLLLCLA 172
Query: 241 SVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAY 300
+ + ++YL + +G++++G KV++ TA PY+VLTI LIRGL LPGA G+ Y
Sbjct: 173 ACWAIVYLCVIRGIETTG---------KVIYFTALFPYLVLTIFLIRGLTLPGATEGLIY 223
Score = 57.9 bits (140), Expect = 1e-08
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
+GKV++ TA PY+VLTI LIRGL LPGA G+ Y P + L+ +V
Sbjct: 189 TGKVIYFTALFPYLVLTIFLIRGLTLPGATEGLIYLFTPNMHILQNPRV 237
Score = 47.5 bits (113), Expect = 2e-05
Identities = 20/37 (54%), Positives = 26/37 (70%)
Query: 583 GPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDS 619
GPGL F V+ EAV +P + VW++LFF ML LG+ S
Sbjct: 365 GPGLAFIVFTEAVLHMPGAQVWAVLFFGMLFTLGLSS 401
Score = 33.6 bits (77), Expect = 0.50
Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 741 LITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
L TL+ G Y +FD+++A ++LL A FE V V + YG R
Sbjct: 438 LSALCFTLQSGN-YWLEIFDSFAASLNLLVIAFFEVVGVVYVYGIKR 483
>gnl|CDD|212091 cd11522, SLC6sbd_SBAT1, Sodium-coupled branched-chain amino-acid
transporter 1; solute-binding domain. SBAT1 (also
called B0AT2, v7-3, NTT7-3) is a high-affinity
Na(+)-dependent transporter for large neutral amino
acids, including leucine, isoleucine, valine, proline
and methionine. Human SBAT1 is encoded by the SLC6A15
gene, a susceptibility gene for major depression. SBAT1
is expressed in brain, and may have a role in
transporting neurotransmitter precursors into neurons.
This subgroup belongs to the solute carrier 6 (SLC6)
transporter family.
Length = 580
Score = 189 bits (482), Expect = 1e-51
Identities = 97/246 (39%), Positives = 147/246 (59%), Gaps = 27/246 (10%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W S ++L+ +GF+V L NVWRFPYLC KNGGGA+LVPY ++L+ +PLF++EL
Sbjct: 1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLLVIGIPLFFLELS 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ R+G I VW I P G+GF + +V F+V+ YYNVIIGW+L++ S LPW
Sbjct: 61 VGQRIRRGSIGVWNYISPKLGGIGFASCIVCFFVALYYNVIIGWSLFYFSQSFQQPLPWD 120
Query: 183 NC------NNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLV 236
C ++T+ P CE + S+ T+Y Y R L + S + + G W +
Sbjct: 121 QCPLVKNASHTFVEPECEKS------SATTYYWY---REALNI--SSSISESGGLNWKMT 169
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296
+C+ + + M+ L++ KG++SSG K+++ ++ PYVVL LIR L+L G++
Sbjct: 170 ICLLAAWVMVCLAMIKGIQSSG---------KIMYFSSLFPYVVLICFLIRALLLNGSVD 220
Query: 297 GIAYYL 302
GI +
Sbjct: 221 GIRHMF 226
Score = 45.3 bits (107), Expect = 1e-04
Identities = 20/49 (40%), Positives = 32/49 (65%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGK+++ ++ PYVVL LIR L+L G++ GI + P+L + E +V
Sbjct: 190 SGKIMYFSSLFPYVVLICFLIRALLLNGSVDGIRHMFTPKLEIMLEPKV 238
Score = 42.6 bits (100), Expect = 7e-04
Identities = 19/40 (47%), Positives = 25/40 (62%)
Query: 580 ATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDS 619
A G GL F + EA+ PAS WS++FF ML+ LG+ S
Sbjct: 375 AVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGS 414
Score = 35.3 bits (81), Expect = 0.16
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 748 LKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYG 784
++ G Y +FD YSA + LL + E++AVS+ YG
Sbjct: 453 VQRSGNYFVTMFDDYSATLPLLIVVILENIAVSFVYG 489
>gnl|CDD|212084 cd11515, SLC6sbd_NTT4-like, Na(+)-dependent neurotransmitter
transporter 4, and related proteins; solute-binding
domain. This subgroup includes the solute-binding
domain of NTT4 (also called XT1) and SBAT1 (also called
B0AT2, v7-3, NTT7-3); both these proteins can transport
neutral amino acids. Human SBAT1 is encoded by the
SLC6A15 gene, a susceptibility gene for major
depression. SBAT1 is expressed in brain, and may have a
role in transporting neurotransmitter precursors into
neurons. Human NTT4 is encoded by the SLC6A17 gene. NTT4
is specifically expressed in the nervous system, in
synaptic vesicles of glutamatergic and GABAergic
neurons, and may play an important role in synaptic
transmission. This subgroup belongs to the solute
carrier 6 (SLC6) transporter family.
Length = 530
Score = 188 bits (478), Expect = 2e-51
Identities = 96/246 (39%), Positives = 147/246 (59%), Gaps = 27/246 (10%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W S ++L+ +GF+V L NVWRFPYLC KNGGGA+LVPY ++L+ +PLF++EL
Sbjct: 1 RPAWNSKLQYILAQVGFSVGLGNVWRFPYLCQKNGGGAYLVPYLILLIVIGIPLFFLELS 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ R+G I VW I P G+GF + +V +V+ YYNVIIGW+L++ S LPW
Sbjct: 61 VGQRIRRGSIGVWNYISPKLGGIGFASCIVCLFVALYYNVIIGWSLFYFSQSFQYPLPWD 120
Query: 183 NC------NNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLV 236
C ++T+ P CE + S+ T+Y Y R L + S + + G W +
Sbjct: 121 QCPLVKNASHTFVEPECEKS------SATTYYWY---REALNI--SSSISESGGLNWKMT 169
Query: 237 LCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALT 296
+C+ + + M+ L++ KG++SSG K+++ ++ PYVVL L+RGL+L G++
Sbjct: 170 ICLLAAWVMVCLAMIKGIQSSG---------KIMYFSSLFPYVVLACFLVRGLLLNGSVD 220
Query: 297 GIAYYL 302
GI +
Sbjct: 221 GIRHMF 226
Score = 49.9 bits (119), Expect = 4e-06
Identities = 31/92 (33%), Positives = 44/92 (47%), Gaps = 14/92 (15%)
Query: 542 DCIITSLVNCFTSFFSGFVIFTYLGYMSFKQK---IPISRV-----------ATDGPGLV 587
D ++ S +N FTS + V+F LG+ K K + A G GL
Sbjct: 273 DAVLVSFINFFTSVLATLVVFAVLGFKIQKVKEEEFSALGLDSCLIEDELDKAVQGTGLA 332
Query: 588 FQVYPEAVATLPASNVWSMLFFFMLIMLGIDS 619
F + EA+ PAS WS++FF ML+ LG+ S
Sbjct: 333 FIAFTEAMTHFPASPFWSVMFFLMLVNLGLGS 364
Score = 47.6 bits (113), Expect = 2e-05
Identities = 20/49 (40%), Positives = 33/49 (67%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGK+++ ++ PYVVL L+RGL+L G++ GI + P+L + E +V
Sbjct: 190 SGKIMYFSSLFPYVVLACFLVRGLLLNGSVDGIRHMFTPKLEIMLEPKV 238
Score = 33.7 bits (77), Expect = 0.42
Identities = 15/37 (40%), Positives = 23/37 (62%)
Query: 748 LKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYG 784
++ G Y +FD YSA + LL + E++AV+W YG
Sbjct: 403 VQRSGNYFVTMFDDYSATLPLLIVVILENIAVAWIYG 439
>gnl|CDD|212090 cd11521, SLC6sbd_NTT4, Na(+)-dependent neurotransmitter transporter
4; solute-binding domain. NTT4 (also called XT1)
transports the neutral amino acids, proline, glycine,
leucine, and alanine, and may play an important role in
synaptic transmission. Human NTT4 is encoded by the
SLC6A17 gene. NTT4 is specifically expressed in the
nervous system, in synaptic vesicles of glutamatergic
and GABAergic neurons. This subgroup belongs to the
solute carrier 6 (SLC6) transporter family.
Length = 589
Score = 189 bits (481), Expect = 3e-51
Identities = 95/242 (39%), Positives = 146/242 (60%), Gaps = 19/242 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W S ++L+ IG++V L NVWRFPYLC KNGGGA+LVPY ++L+ +PLF++EL
Sbjct: 1 RPAWNSKLQYILAQIGYSVGLGNVWRFPYLCQKNGGGAYLVPYLVLLIIIGIPLFFLELA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ R+G I VW ICP G+G+ + LV F+V YYNVIIGW++++ F S LPW
Sbjct: 61 VGQRIRRGSIGVWNYICPRLGGIGYASCLVCFFVGLYYNVIIGWSIFYFFKSFQYPLPWS 120
Query: 183 NCNNTWN--TPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVF 240
C N + E +++ +++ +Y R L++ S + + G W + LC+
Sbjct: 121 ECPIVRNGSVAVVEAECEKSSATTYFWY-----REALDI--SNSISESGGLNWKMTLCLL 173
Query: 241 SVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAY 300
+ ++ L++ KG++SSG KV++ ++ PYVVL L+RGL+L GA+ GI +
Sbjct: 174 VAWSIVGLAMIKGIQSSG---------KVMYFSSLFPYVVLVCFLVRGLLLRGAVDGILH 224
Query: 301 YL 302
Sbjct: 225 MF 226
Score = 49.9 bits (119), Expect = 4e-06
Identities = 22/49 (44%), Positives = 34/49 (69%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
SGKV++ ++ PYVVL L+RGL+L GA+ GI + P+L ++ + QV
Sbjct: 190 SGKVMYFSSLFPYVVLVCFLVRGLLLRGAVDGILHMFTPKLDKMLDPQV 238
Score = 45.3 bits (107), Expect = 1e-04
Identities = 19/42 (45%), Positives = 26/42 (61%)
Query: 580 ATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDSAV 621
+ G GL F + EA+ PAS WS++FF MLI LG+ S +
Sbjct: 375 SVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLINLGLGSMI 416
Score = 36.4 bits (84), Expect = 0.063
Identities = 14/40 (35%), Positives = 23/40 (57%)
Query: 748 LKEGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYGKSR 787
++ G Y +FD YSA + L + E++AV+W YG +
Sbjct: 453 VQRSGNYFVTMFDDYSATLPLTIVVILENIAVAWIYGTKK 492
>gnl|CDD|212085 cd11516, SLC6sbd_B0AT1, Na(+)-dependent neutral amino acids
transporter, B0AT1; solute-binding domain. B0AT1 (also
called HND) transports neutral amino acids. Human B0AT1
is encoded by the SLC6A19 gene. B0AT1 is expressed
primarily in the kidney and intestine; it requires
collectrin for expression in the kidney, and
angiotensin-converting enzyme 2 for expression in the
intestine. Interaction with these two proteins
implicates B0AT1 in more complex processes such as
glomerular structure, exocytosis, and blood pressure
control. The autosomal recessive disorder, Hartnup
disorder, is caused by mutations in B0AT1. This subgroup
belongs to the solute carrier 6 (SLC6) transporter
family.
Length = 581
Score = 186 bits (473), Expect = 3e-50
Identities = 95/242 (39%), Positives = 140/242 (57%), Gaps = 25/242 (10%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + A ++L+ +GF V L NVWRFPYLC +GGGAF++P+ ++LVF +PL ++E
Sbjct: 1 RPKWDNKAQYMLTCVGFCVGLGNVWRFPYLCQSHGGGAFMIPFLILLVFEGIPLLHLEFA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ R+G + VW I P KGVG ++ V+F VS YYN II W +++ F S LPW
Sbjct: 61 IGQRLRKGSVGVWSTIHPTLKGVGIASMCVSFLVSLYYNTIIAWVMWYFFNSFQEPLPWS 120
Query: 183 NC----NNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLC 238
C N T P C + S ++ Y R L S + D G +W +VLC
Sbjct: 121 QCPLNENRTGYIPECAKS------SPVDYFWY---RETLNT--STSIDDSGGIQWWMVLC 169
Query: 239 VFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGI 298
+ + +LY+ +G++++G K V+ T+T+PY+VLTI LIRGL L G++ GI
Sbjct: 170 LACAWGVLYVCTIRGIETTG---------KAVYVTSTLPYLVLTIFLIRGLTLKGSVNGI 220
Query: 299 AY 300
+
Sbjct: 221 KF 222
Score = 53.7 bits (129), Expect = 3e-07
Identities = 22/44 (50%), Positives = 33/44 (75%)
Query: 333 SGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRL 376
+GK V+ T+T+PY+VLTI LIRGL L G++ GI + P+++ L
Sbjct: 188 TGKAVYVTSTLPYLVLTIFLIRGLTLKGSVNGIKFLFTPDINEL 231
Score = 44.9 bits (106), Expect = 2e-04
Identities = 19/40 (47%), Positives = 26/40 (65%)
Query: 580 ATDGPGLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDS 619
+G GL F V+ EA+ +P S +WS+LFF ML LG+ S
Sbjct: 361 GVEGTGLAFIVFTEAITKMPLSPLWSVLFFIMLFCLGLSS 400
>gnl|CDD|212071 cd11502, SLC6sbd_NTT5, Neurotransmitter transporter 5;
solute-binding domain. Human NTT5 is encoded by the
SLC6A16 gene. NTT5 is expressed in testis, pancreas, and
prostate; its expression is predominantly intracellular,
indicative of a vesicular location. Its substrates are
unknown. This subgroup belongs to the solute carrier 6
(SLC6) transporter family.
Length = 543
Score = 168 bits (427), Expect = 2e-44
Identities = 90/241 (37%), Positives = 137/241 (56%), Gaps = 19/241 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
R W + +++L+ +GF++ L N+WRFPYLC +NGGG+FL+ Y +ML +PL ++E+
Sbjct: 1 RPLWRNKTEYILAQVGFSLGLGNLWRFPYLCLRNGGGSFLIAYFVMLFLVGIPLLFLEMA 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
+GQ +QG I VW+ I P F GVG+ +VL F V+ YYNV+ WAL++L S LPW
Sbjct: 61 VGQRLQQGSIRVWKAISPWFGGVGYSSVLACFLVALYYNVVNSWALFYLGHSFQFPLPWE 120
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSV 242
C N+ E RT T Y + + L + S+ + D G L L +F
Sbjct: 121 QCPLVKNSSDPE--CART-----TPSGYFWYQKTL--KASDRIEDGGSLVGHLALSLFVA 171
Query: 243 YCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
+C++Y+++ +G+KS+G K + +PYV+L LLIR L L GA G+ + L
Sbjct: 172 WCLVYVTMIRGLKSTG---------KSIIFLVLLPYVILLCLLIRSLFLEGAFFGLLWLL 222
Query: 303 Q 303
Sbjct: 223 V 223
Score = 53.9 bits (130), Expect = 3e-07
Identities = 44/247 (17%), Positives = 83/247 (33%), Gaps = 51/247 (20%)
Query: 541 RDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLPA 600
D + +LVN TS + + F +G+ + + ++ + PEA
Sbjct: 268 TDAFVVALVNLLTSLIATPIFFAVMGFWATVSTHRCCEKNVENLLMLGVLPPEAKPPADL 327
Query: 601 SNVWSMLFFFMLIMLGIDSAVSRKPVVSGTLKSRVINWKTLGRKEPGSSSYGCFFSAWLR 660
S + ++ L L ++ P + S I+ PGS+ + F L
Sbjct: 328 SLDPASIYLLWLFNLPMEG-----PGFAFLAFSEAISLA------PGSAFWAIVFFLALL 376
Query: 661 LLTLSGVLGSNHGRGGNLLTCLGGVIVSGTVKSRGVVLFSIIFHEPLQYNDYSYPGWAEW 720
L LS + G +G+ PLQ ++ + +
Sbjct: 377 LAGLSTMFGI----------------------MQGIYT-------PLQ---DTFSFFRKH 404
Query: 721 IGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVS 780
L + + +F + G Y L D Y + ++ +FE++A++
Sbjct: 405 PKLLTVLVCVGLFLGGLVF--------TQPSGSYFRSLLDDYLVPLPIIFIVVFENIALA 456
Query: 781 WFYGKSR 787
W YG R
Sbjct: 457 WAYGAKR 463
Score = 36.6 bits (85), Expect = 0.056
Identities = 18/58 (31%), Positives = 30/58 (51%)
Query: 332 ISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQVKFISLNYL 389
+GK + +PYV+L LLIR L L GA G+ + L ++S L + ++ +
Sbjct: 185 STGKSIIFLVLLPYVILLCLLIRSLFLEGAFFGLLWLLVAKVSSLANLSIWRVAGGQV 242
>gnl|CDD|212042 cd10334, SLC6sbd_u1, uncharacterized bacterial and archaeal solute
carrier 6 subfamily; solute-binding domain. SLC6
proteins (also called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter.
Length = 480
Score = 145 bits (369), Expect = 4e-37
Identities = 84/240 (35%), Positives = 122/240 (50%), Gaps = 36/240 (15%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE WGS F+L+ IG AV L N+WRFPY+ Y+NGGGAFL+PY + L+ +PL +E
Sbjct: 1 REQWGSRLGFILAAIGSAVGLGNIWRFPYVAYENGGGAFLIPYLIALLTAGIPLLILEYG 60
Query: 124 LGQFNRQGPISVWR-ICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWL 182
LG R +R I F+ +G+ VLVAF ++ YY VII WAL +LF S T L W
Sbjct: 61 LGHKFRGSAPLAFRRINKKFEWIGWWQVLVAFVIATYYAVIIAWALSYLFFSFT--LAW- 117
Query: 183 NCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSV 242
+ P +F F + +Q S+G D+G W +++ + V
Sbjct: 118 -----GDDP-----------EAFFFGDF--------LQLSDGPFDLGGFVWPILIALVLV 153
Query: 243 YCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
+ +++ L++GVK K + +V+ IL+IR L LPGA G+
Sbjct: 154 WLIIWFILYRGVK--------KGIEKANKIFMPLLFVLFLILVIRALTLPGAADGLNALF 205
Score = 86.4 bits (215), Expect = 1e-17
Identities = 25/79 (31%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 545 ITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATL-PASNV 603
I + N +G +F+ LG+M+ Q +P+S V + G GL F +P+A+ + P +
Sbjct: 255 IVAFANSSFEILAGIGVFSILGFMAQAQGVPVSEVVSSGIGLAFVAFPKAINLMPPGGAL 314
Query: 604 WSMLFFFMLIMLGIDSAVS 622
+ +LFF L+ G+ S +S
Sbjct: 315 FGVLFFLSLVFAGLTSLIS 333
Score = 42.9 bits (102), Expect = 5e-04
Identities = 16/48 (33%), Positives = 24/48 (50%)
Query: 334 GKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
K + +V+ IL+IR L LPGA G+ P+ S L + +V
Sbjct: 170 EKANKIFMPLLFVLFLILVIRALTLPGAADGLNALFTPDWSALLDPKV 217
Score = 29.4 bits (67), Expect = 7.9
Identities = 12/64 (18%), Positives = 26/64 (40%), Gaps = 4/64 (6%)
Query: 722 GWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFESVAVSW 781
G S + ++ + + L+ G G+Y+ + D + ++ L E + V W
Sbjct: 347 GLSRKKAVTIVCLVGFLVSLLFATG----AGLYLLDIVDHFINNYGIVLVGLVEVIVVGW 402
Query: 782 FYGK 785
+G
Sbjct: 403 VFGA 406
>gnl|CDD|212092 cd11554, SLC6sbd_u2, uncharacterized eukaryotic solute carrier 6
subfamily; solute-binding domain. SLC6 proteins (also
called the sodium- and chloride-dependent
neurotransmitter transporter family or Na+/Cl--dependent
transporter family) include neurotransmitter
transporters (NTTs): these are sodium- and
chloride-dependent plasma membrane transporters for the
monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain, and
are involved in regulating neurotransmitter signaling
and homeostasis, and are the target of a range of
therapeutic drugs for the treatment of psychiatric
diseases. Bacterial members of the SLC6 family include
the LeuT amino acid transporter.
Length = 406
Score = 137 bits (348), Expect = 6e-35
Identities = 72/237 (30%), Positives = 97/237 (40%), Gaps = 69/237 (29%)
Query: 67 WGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELILGQ 126
WGS F+L+ +G AV L N+ RFP + Y NGG F +PY L LV A+P+ +EL LGQ
Sbjct: 3 WGSRTAFVLAAMGGAVGLGNLLRFPSVVYNNGGLQFFIPYLLALVLLAIPILILELALGQ 62
Query: 127 FNRQGPISVW-RICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELPWLNCN 185
R G + + I KGVG V F V YY I+ W + + S T
Sbjct: 63 AYRGGCVKAFNLINRRAKGVGAAVVFGGFVVCTYYVPILAWIMVYFRHSFT--------- 113
Query: 186 NTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVFSVYCM 245
+FT W +V
Sbjct: 114 --------------VGWLAFT--------------------------WFVV--------- 124
Query: 246 LYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYL 302
+L +F+GV S+G +VV+ T +P V++ ILL RG LP A GI Y
Sbjct: 125 -WLCVFRGVGSTG---------RVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYF 171
Score = 69.3 bits (170), Expect = 3e-12
Identities = 31/89 (34%), Positives = 45/89 (50%), Gaps = 2/89 (2%)
Query: 534 SPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPE 593
S S +D +I + N +GF +F +GY+ A G L F YPE
Sbjct: 211 SKFSNAVQDALIIAGSNSLFEIIAGFAVFGIVGYLG-MTPGVEG-EALGGFVLGFVTYPE 268
Query: 594 AVATLPASNVWSMLFFFMLIMLGIDSAVS 622
A+A +P SN +++LFF L +LGI SA +
Sbjct: 269 AIAQMPGSNFFAVLFFLTLFLLGISSAFA 297
Score = 46.9 bits (112), Expect = 3e-05
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 332 ISGKVVWATATMPYVVLTILLIRGLMLPGALTGIAYYLQP 371
+G+VV+ T +P V++ ILL RG LP A GI Y
Sbjct: 134 STGRVVYITMGLPIVLIIILLGRGASLPNAGDGIRLYFAT 173
Score = 29.6 bits (67), Expect = 7.3
Identities = 8/35 (22%), Positives = 15/35 (42%)
Query: 750 EGGIYMFHLFDTYSAGISLLCSALFESVAVSWFYG 784
G Y+ D + + ++L+ E VA + Y
Sbjct: 338 RFGYYLLDAVDAWISNVALVFVVWAECVAATTVYR 372
>gnl|CDD|223805 COG0733, COG0733, Na+-dependent transporters of the SNF family
[General function prediction only].
Length = 439
Score = 121 bits (306), Expect = 2e-29
Identities = 67/246 (27%), Positives = 106/246 (43%), Gaps = 50/246 (20%)
Query: 63 GRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMEL 122
RE W S F+L+ G AV L N+WRFPY+ +NGGGAFL+PY + L+ +PL E
Sbjct: 4 KREQWSSRLGFILAAAGSAVGLGNIWRFPYMAGENGGGAFLLPYLIFLLLVGIPLLLAEF 63
Query: 123 ILGQFNRQGPISVWRIC---PLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSEL 179
+G+ R+ + +R ++ +G+ VL F + +Y+VI GW L +L S T L
Sbjct: 64 AIGRRGRKNAVGAFRKLAPKKKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGAL 123
Query: 180 PWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCV 239
P + + F V+
Sbjct: 124 P----------------------DTGEQFAQLFG-------------QTISNPGLAVIFH 148
Query: 240 FSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLMLPGALTG 297
+ L + +GVK K +K++ MP +V+ IL+IR + LPGA+ G
Sbjct: 149 LLFLVLTALIVSRGVKKGIEKA-----NKIM-----MPLLFVLFIILVIRAVTLPGAMEG 198
Query: 298 IAYYLQ 303
+ + +
Sbjct: 199 LKFLFK 204
Score = 61.9 bits (151), Expect = 7e-10
Identities = 28/90 (31%), Positives = 40/90 (44%), Gaps = 8/90 (8%)
Query: 533 LSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYP 592
LS S + L+N S +G VIF L A+ GPGLVF V P
Sbjct: 241 LSKKSDLVSSALSIVLLNTLISLLAGLVIFPALFSFGAD--------ASQGPGLVFIVLP 292
Query: 593 EAVATLPASNVWSMLFFFMLIMLGIDSAVS 622
+P ++ +LFF +L+ + SA+S
Sbjct: 293 AVFNQMPLGTLFGILFFLLLLFAALTSAIS 322
Score = 40.3 bits (95), Expect = 0.004
Identities = 16/41 (39%), Positives = 28/41 (68%), Gaps = 2/41 (4%)
Query: 343 MP--YVVLTILLIRGLMLPGALTGIAYYLQPELSRLKETQV 381
MP +V+ IL+IR + LPGA+ G+ + +P+ S+L + +V
Sbjct: 175 MPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKV 215
>gnl|CDD|212043 cd10336, SLC6sbd_Tyt1-Like, solute carrier 6 subfamily,
Fusobacterium nucleatum Tyt1-like; solute-binding
domain. SLC6 proteins (also called the sodium- and
chloride-dependent neurotransmitter transporter family
or Na+/Cl--dependent transporter family) include
neurotransmitter transporters (NTTs): these are sodium-
and chloride-dependent plasma membrane transporters for
the monoamine neurotransmitters serotonin
(5-hydroxytryptamine), dopamine, and norepinephrine, and
the amino acid neurotransmitters GABA and glycine. These
NTTs are widely expressed in the mammalian brain,
involved in regulating neurotransmitter signaling and
homeostasis, and the target of a range of therapeutic
drugs for the treatment of psychiatric diseases.
Bacterial members of the SLC6 family include the LeuT
amino acid transporter. An arrangement of 12
transmembrane (TM) helices appears to be as a common
topological motif for eukaryotic and some prokaryotic
and archaeal NTTs. However, this subfamily which
contains the majority of bacterial members and some
archaeal members, appears to contain only 11 TMs; for
example the functional Fusobacterium nucleatum tyrosine
transporter Tyt1.
Length = 439
Score = 117 bits (296), Expect = 6e-28
Identities = 75/260 (28%), Positives = 114/260 (43%), Gaps = 51/260 (19%)
Query: 65 ETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELIL 124
E W S F+L+ G AV L N+WRFPYL +NGGGAFL+ Y L ++ +PL E +
Sbjct: 1 EQWSSRLGFILAAAGSAVGLGNIWRFPYLAGENGGGAFLLVYLLFVLLIGLPLLIAEFAI 60
Query: 125 GQFNRQGPI-SVWRICP---LFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTTSELP 180
G+ R+ P+ + ++ +K VG+ VL AF + +Y+V+ GW L +LF S T
Sbjct: 61 GRRTRKNPVGAFAKLAKGGKKWKLVGWLGVLGAFLILSFYSVVGGWVLAYLFKSLTGSF- 119
Query: 181 WLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWSLVLCVF 240
+ + + F + S +L
Sbjct: 120 -----------------AGADAAEVGAAFFGFIASP----------------LSPLLWHL 146
Query: 241 SVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMP--YVVLTILLIRGLMLPGALTGI 298
+ L + +GVK + SK++ MP +V+L IL IR L LPGA G+
Sbjct: 147 LFLLLTALIVARGVKKGIERA-----SKIL-----MPLLFVLLIILAIRSLTLPGAGEGL 196
Query: 299 AYYLQQPAPSSLPGNLVTTA 318
+ +P S L +V A
Sbjct: 197 KFLF-KPDFSKLTPEVVLAA 215
Score = 51.3 bits (124), Expect = 1e-06
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 8/83 (9%)
Query: 540 FRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYPEAVATLP 599
+ +I ++++ + +G VIF + +F + GPGL+F P A +P
Sbjct: 244 PKSALIVAILDTLVALLAGLVIFPAV--FAFGLE------PAAGPGLLFITLPAVFAQMP 295
Query: 600 ASNVWSMLFFFMLIMLGIDSAVS 622
++ +LFF +L+ + SA+S
Sbjct: 296 GGRLFGILFFLLLLFAALTSAIS 318
Score = 41.6 bits (99), Expect = 0.001
Identities = 17/36 (47%), Positives = 24/36 (66%), Gaps = 2/36 (5%)
Query: 343 MP--YVVLTILLIRGLMLPGALTGIAYYLQPELSRL 376
MP +V+L IL IR L LPGA G+ + +P+ S+L
Sbjct: 172 MPLLFVLLIILAIRSLTLPGAGEGLKFLFKPDFSKL 207
>gnl|CDD|212041 cd10333, LeuT-like_sbd, Aquifex aeolicus LeuT and related proteins;
solute binding domain. LeuT is a bacterial amino acid
transporter with specificity for the hydrophobic amino
acids glycine, alanine, methionine, and leucine. This
subgroup belongs to the solute carrier 6 (SLC6)
transporter family; LeuT has been used as a structural
template for understanding fundamental aspects of SLC6
function. It has an arrangement of 12 transmembrane
helices (TMs), which appears to be a common motif for
eukaryotic and some prokaryotic and archaeal SLC6s: an
inverted topology repeat: TMs1-5 and TMs6-10, and
TMs11-12.
Length = 500
Score = 88.1 bits (219), Expect = 4e-18
Identities = 40/125 (32%), Positives = 60/125 (48%), Gaps = 9/125 (7%)
Query: 64 RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
RE WGS +L++ G AV L N RFP +NGGGAF++PY + + +PL ++E
Sbjct: 1 REHWGSRIGLILAMAGNAVGLGNFLRFPVQAAQNGGGAFMIPYFIAFLLVGIPLMWVEWA 60
Query: 124 LGQF-----NRQGP---ISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFAST 175
+G++ + P + R K +G + V+ YY I W L + F S
Sbjct: 61 MGRYGGKHGHGTTPMIFLLAKRN-IFAKILGAIGFAIPLLVNSYYVYIESWTLGYAFKSL 119
Query: 176 TSELP 180
T P
Sbjct: 120 TGGYP 124
Score = 31.1 bits (71), Expect = 2.6
Identities = 12/38 (31%), Positives = 20/38 (52%)
Query: 585 GLVFQVYPEAVATLPASNVWSMLFFFMLIMLGIDSAVS 622
GL F P + +P + L+FF+L GI S+++
Sbjct: 300 GLGFIALPNVFSQMPGGQFFGFLWFFLLFFAGITSSIA 337
>gnl|CDD|193067 pfam12536, DUF3734, Patatin phospholipase. This domain family is
found in bacteria, and is approximately 110 amino acids
in length. The family is found in association with
pfam01734. There are two completely conserved residues
(F and G) that may be functionally important. The
proteins in this family are frequently annotated as
patatin family phospholipases however there is little
accompanying literature to confirm this.
Length = 108
Score = 30.7 bits (70), Expect = 0.78
Identities = 8/19 (42%), Positives = 12/19 (63%)
Query: 210 YDFSRAVLEMQWSEGLHDM 228
YDFSR+ + +W+ G D
Sbjct: 72 YDFSRSSIRERWAAGYEDA 90
>gnl|CDD|233530 TIGR01686, FkbH, FkbH-like domain. This model describes a domain
of a family of proteins of unknown overall function. One
of these, however, is a modular polyketide synthase 4800
amino acids in length from Streptomyces avermilitis in
which this domain is the C-terminal segment. By
contrast, the FkbH protein from Streptomyces
hygroscopicus aparently contains only this domain. The
remaining members of the family all contain an
additional N-terminal domain of between 200 and 275
amino acids which show less than 20% identity to one
another. It seems likely then that these proteins are
involved in disparate functions, probably the
biosynthesis of different natural products. For
instance, the FkbH gene is found in a gene cluster
believed to be responsible for the biosynthesis of
unususal "PKS extender units" in the ascomycin pathway.
This domain is composed of two parts, the first of which
is a member of subfamily IIIC (TIGR01681) of the
haloacid dehalogenase (HAD) superfamily of
aspartate-nucleophile hydrolases. All of the
characterized enzymes within subfamily III are
phosphatases, and all of the active site residues
characteristic of HAD-superfamily phosphatases are
present in this domain. The C-terminal portion of this
domain is unique to this family (by BLAST).
Length = 320
Score = 29.8 bits (67), Expect = 5.1
Identities = 11/33 (33%), Positives = 15/33 (45%)
Query: 510 FSVAMINVTPVHEHLTELQRQDNLSPSSITFRD 542
F IN P E L ++ ++ NL S F D
Sbjct: 78 FDARSINWGPKSESLRKIAKKLNLGTDSFLFID 110
>gnl|CDD|143481 cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate
(PLP)-Dependent Enzyme Alanine Racemase. This family
includes predominantly bacterial alanine racemases (AR),
some serine racemases (SerRac), and putative
bifunctional enzymes containing N-terminal
UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine
ligase (murF) and C-terminal AR domains. These proteins
are fold type III PLP-dependent enzymes that play
essential roles in peptidoglycan biosynthesis. AR
catalyzes the interconversion between L- and D-alanine,
which is an essential component of the peptidoglycan
layer of bacterial cell walls. SerRac converts L-serine
into its D-enantiomer (D-serine) for peptidoglycan
synthesis. murF catalyzes the addition of D-Ala-D-Ala to
UDPMurNAc-tripeptide, the final step in the synthesis of
the cytoplasmic precursor of bacterial cell wall
peptidoglycan. Members of this family contain an
N-terminal PLP-binding TIM-barrel domain and a
C-terminal beta-sandwich domain. They exist as
homodimers with active sites that lie at the interface
between the TIM barrel domain of one subunit and the
beta-sandwich domain of the other subunit. AR and other
members of this family require dimer formation and the
presence of the PLP cofactor for catalytic activity.
Fungal ARs and eukaryotic serine racemases, which are
fold types I and II PLP-dependent enzymes respectively,
are excluded from this family.
Length = 367
Score = 29.4 bits (67), Expect = 8.2
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 6/35 (17%)
Query: 624 KPVVSGTLKSRVINWKTLGRKEPGSS-SYGCFFSA 657
KPV+S LK+RV+ KT+ G SYG ++A
Sbjct: 237 KPVMS--LKARVVQVKTV---PAGEGVSYGRTYTA 266
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.325 0.140 0.445
Gapped
Lambda K H
0.267 0.0765 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 42,438,228
Number of extensions: 4192758
Number of successful extensions: 5458
Number of sequences better than 10.0: 1
Number of HSP's gapped: 5346
Number of HSP's successfully gapped: 210
Length of query: 830
Length of database: 10,937,602
Length adjustment: 105
Effective length of query: 725
Effective length of database: 6,280,432
Effective search space: 4553313200
Effective search space used: 4553313200
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 63 (28.0 bits)