RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15483
         (830 letters)



>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter
           homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
          Length = 509

 Score =  164 bits (417), Expect = 5e-44
 Identities = 53/268 (19%), Positives = 91/268 (33%), Gaps = 29/268 (10%)

Query: 64  RETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPLFYMELI 123
           RE W +    +L++ G AV L N  RFP    +NGGGAF++PY +  +   +PL ++E  
Sbjct: 1   REHWATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWA 60

Query: 124 LGQFNRQGPISVWRI-------CPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTT 176
           +G++                      K +G   + +   V+ YY  I  W L F      
Sbjct: 61  MGRYGGAQGHGTTPAIFYLLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIKFLV 120

Query: 177 SELPWLNCNNTWNTPLCEDTYNRTNGSSFTFYHYDFSRAVLEMQWSEGLHDMGYPKWS-L 235
             +P    N T               S    +       +   +  E +       +   
Sbjct: 121 GLVPEPPPNATDPD------------SILRPFKEFLYSYIGVPKGDEPILKPSLFAYIVF 168

Query: 236 VLCVFSVYCMLYLSLFKGVKSSGMKFKESSESKVVWATATMPYVVLTILLIRGLMLPGAL 295
           ++ +F    +L   + KG++             +   T  +  V L I +       G  
Sbjct: 169 LITMFINVSILIRGISKGIERFAK---------IAMPTLFILAVFLVIRVFLLETPNGTA 219

Query: 296 TGIAYYLQQPAPSSLPGNLVTTAPLRQV 323
                +L  P    L    V  A + Q+
Sbjct: 220 ADGLNFLWTPDFEKLKDPGVWIAAVGQI 247



 Score = 66.4 bits (161), Expect = 7e-12
 Identities = 27/239 (11%), Positives = 62/239 (25%), Gaps = 42/239 (17%)

Query: 533 LSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYMSFKQKIPISRVATDGPGLVFQVYP 592
           +          +  + +N       G  I        F     ++        L F   P
Sbjct: 265 VRKDQDIVLSGLTAATLNEKAEVILGGSISIPAAVAFFGVANAVAIAKAGAFNLGFITLP 324

Query: 593 EAVATLPASNVWSMLFFFMLIMLGIDSAVSRKPVVSGTLKSRVINWKTLGRKEPGSSSYG 652
              +          L+FF+L   G+ S+++    +     + + +   L RK     +  
Sbjct: 325 AIFSQTAGGTFLGFLWFFLLFFAGLTSSIAIMQPMI----AFLEDELKLSRKHAVLWTAA 380

Query: 653 CFFSAWLRLLTLSGVLGSNHGRGGNLLTCLGGVIVSGTV-----KSR------------- 694
             F +   ++ L+  L       G +     G+             +             
Sbjct: 381 IVFFSAHLVMFLNKSLDEMDFWAGTIGVVFFGLTELIIFFWIFGADKAWEEINRGGIIKV 440

Query: 695 -----------------GVVLFSIIFHEPLQYNDYSYPGWAEW---IGWSLALSSILMI 733
                             +++     + P    +  +  W      IG  L L+ ++ +
Sbjct: 441 PRIYYYVMRYITPAFLAVLLVVWAREYIPKIMEETHWTVWITRFYIIGLFLFLTFLVFL 499



 Score = 37.1 bits (85), Expect = 0.009
 Identities = 9/71 (12%), Positives = 21/71 (29%), Gaps = 6/71 (8%)

Query: 717 WAEWIGWSLALSSILMIPIVAIFKLITTPGTLKEGGIYMFHLFDTYSAGISLLCSALFES 776
             + +  S   + +    IV     +                 D ++  I ++   L E 
Sbjct: 363 LEDELKLSRKHAVLWTAAIVFFSAHLVMFLN------KSLDEMDFWAGTIGVVFFGLTEL 416

Query: 777 VAVSWFYGKSR 787
           +   W +G  +
Sbjct: 417 IIFFWIFGADK 427


>d1h4ax1 b.11.1.1 (X:1-85) gamma-Crystallin {Human (Homo sapiens),
           isoform D [TaxId: 9606]}
          Length = 85

 Score = 28.6 bits (64), Expect = 0.76
 Identities = 7/22 (31%), Positives = 12/22 (54%)

Query: 713 SYPGWAEWIGWSLALSSILMIP 734
            Y    +W+G S ++ S  +IP
Sbjct: 61  DYADHQQWMGLSDSVRSCRLIP 82


>d1r59o2 c.55.1.4 (O:257-491) Glycerol kinase {Enterococcus
           casseliflavus [TaxId: 37734]}
          Length = 235

 Score = 29.1 bits (64), Expect = 2.0
 Identities = 18/119 (15%), Positives = 38/119 (31%), Gaps = 2/119 (1%)

Query: 58  FEHPDGRETWGSNADFLLSIIGFAVDLANVWRFPYLCYKNGGGAFLVPYTLMLVFGAVPL 117
           FE    + T+G+ A F++   G    L++      + Y   G  +      + V G+   
Sbjct: 1   FEKGMIKNTYGTGA-FIVMNTGEEPQLSDNDLLTTIGYGINGKVYYALEGSIFVAGSAIQ 59

Query: 118 FYMELILGQFNRQGPISVWRICPLFKGVGFCAVLVAFYVSFYYNVIIGWALYFLFASTT 176
           +  + +           +         V            ++ +   G A++ L   TT
Sbjct: 60  WLRDGLRMIETSPQSEELAAKAKGDNEVYVVPAFTGLGAPYWDSEARG-AVFGLTRGTT 117


>d1ct5a_ c.1.6.2 (A:) "Hypothetical" protein ybl036c {Baker's yeast
           (Saccharomyces cerevisiae) [TaxId: 4932]}
          Length = 244

 Score = 27.6 bits (60), Expect = 5.4
 Identities = 6/33 (18%), Positives = 15/33 (45%)

Query: 796 QVKSVKYLIELEKHIITISRCRDNVKLIAFMKT 828
           Q +SV+ ++  E   + ++     + L+   K 
Sbjct: 16  QYESVREVVNAEAKNVHVNENASKILLLVVSKL 48


>d1sjda1 c.1.11.2 (A:126-367) N-acylamino acid racemase
           {Amycolatopsis sp. [TaxId: 37632]}
          Length = 242

 Score = 27.3 bits (59), Expect = 7.6
 Identities = 24/216 (11%), Positives = 50/216 (23%), Gaps = 12/216 (5%)

Query: 389 LSVQGNTGVERCSRPDFLLCWGRIWCSRFRVHLADHCTTEELSLSLTPLCWCLVLFPCFT 448
           L ++    VE             +               +   L    L           
Sbjct: 37  LKIEPGWDVEPVRAVRERFGDDVLLQVDANTAYTLGDAPQLARLDPFGLLLIEQPLEEED 96

Query: 449 WNSFSDSSTDKGPSVFGEFVLYSKMGGLECVITGLMDEFRVYFKGYPHAREIFTCCAIAV 508
               ++ +      +  +  + S     + +  G +    +         E      +  
Sbjct: 97  VLGHAELARRIQTPICLDESIVSARAAADAIKLGAVQIVNIKPGRVGGYLEARRVHDVCA 156

Query: 509 SFSVAMINVTPVHEHLTELQRQDNLSPSSITFRDCIITSLVNCFTSFFSGFVIFTYLGYM 568
           +  + +     +   L         S  + T       S     T     FV+    G++
Sbjct: 157 AHGIPVWCGGMIETGLGRAANVALASLPNFTLPGDTSASDRFYKTDITEPFVLSG--GHL 214

Query: 569 SFKQKIPISRVATDGPGLVFQVYPEAVATLPASNVW 604
                         GPGL     PE +  +  + VW
Sbjct: 215 P----------VPTGPGLGVAPIPELLDEVTTAKVW 240


>d2b5ua2 b.110.1.1 (A:84-315) Colicin E3 N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 232

 Score = 27.1 bits (60), Expect = 8.2
 Identities = 10/54 (18%), Positives = 21/54 (38%)

Query: 272 ATATMPYVVLTILLIRGLMLPGALTGIAYYLQQPAPSSLPGNLVTTAPLRQVPT 325
           A    P+      +    +LP  +      +     +SLP + +T +P+  +P 
Sbjct: 38  AALKGPFKFGLWGVALYGVLPSQIAKDDPNMMSKIVTSLPADDITESPVSSLPL 91


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.325    0.140    0.445 

Gapped
Lambda     K      H
   0.267   0.0423    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 3,163,385
Number of extensions: 149143
Number of successful extensions: 347
Number of sequences better than 10.0: 1
Number of HSP's gapped: 345
Number of HSP's successfully gapped: 17
Length of query: 830
Length of database: 2,407,596
Length adjustment: 93
Effective length of query: 737
Effective length of database: 1,130,706
Effective search space: 833330322
Effective search space used: 833330322
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 57 (26.5 bits)