BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy15484
         (1233 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|307190121|gb|EFN74275.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 1976

 Score = 1223 bits (3164), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1377 (49%), Positives = 881/1377 (63%), Gaps = 188/1377 (13%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I  +   ++IM+TCS+RLPINSPLK  VT + 
Sbjct: 626  FNSAISLVNRYCAKLPSDTFTRLTPEWSIEVVNIQETIMYTCSLRLPINSPLKYVVTSYP 685

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVP---KTPEIET 115
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   +T   E 
Sbjct: 686  MPNRAMARRMAALQMCVDLHRENEIDDNLLPIGKENFKAKPEDAEVPALPDESRTDFSEA 745

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP V  P YLY + M L+CP+P+EQN RGR+I+PPE S
Sbjct: 746  RPGTTKRRQYYYKKTAEALTDCRPIVGVPSYLYHINMILSCPLPEEQNTRGRRIYPPEES 805

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  ILT K IPK+C FPI+TR GEV V ++L  + ++L E  +     F++Y FT VL
Sbjct: 806  AIGFGILTLKEIPKLCPFPIYTRSGEVHVQLKLSKQTIILDEVQVERVDTFLNYTFTNVL 865

Query: 236  KLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
            +L+KYLMLFDPN SENSY IVP    T  +   + +DW F+  I ++ N V   +PE++R
Sbjct: 866  RLQKYLMLFDPNASENSYIIVPVKIFTTDEGSDVCVDWNFLECIYQNRNAVPTKVPEEDR 925

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +NF FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   + Y TFEEYY  K
Sbjct: 926  KNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--HDYSTFEEYYLKK 983

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YG+QIQNLEQ LLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV 
Sbjct: 984  YGIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVA 1043

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFN 471
            ELC IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+ +L+   EWP  +
Sbjct: 1044 ELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQQVLNSDFEWPALD 1103

Query: 472  FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCD 531
            FGW + ++ ++   +T+ A     ++ +VN     ++ +   C   +  ++ +K+  +C+
Sbjct: 1104 FGWSLAEVLKR-SKETEKAKQTKNENAQVNSP--SNNMIFNKCQNTSSQDVNNKQNIMCN 1160

Query: 532  SGNEQENEDEEKLDKIKSD--ENKTESQGVEPWVEIGTWSNEMA--AGVE---------- 577
                 E + E K D  ++D  EN       +  +EIGTWSN+MA    VE          
Sbjct: 1161 -----EKQRELKFDDTETDQVENNIADNQKDDELEIGTWSNDMAWSNNVEMNTMDYDADN 1215

Query: 578  --CKPYPMT----------------PPMFSDDEDSNDDLSSVDFDVEDDFRENEKEDTLQ 619
               K +P+                  P +  D D +DD+ S  F    D  E+E    L+
Sbjct: 1216 DNLKSFPLNVTVLPQDFGWNDIRYGSPTYESDFDESDDVYSDGFADTSDESEDESRG-LK 1274

Query: 620  IQFKGKYSAEAICE----GEEESALKIQDWIES-----NFFW-------EEIDVNHINSK 663
            I +  +  AEA+ +     ++E   KI D +E+     N FW       E +   H  + 
Sbjct: 1275 ISYMAENVAEAVEDEKQVSKQEINKKILDLLETEKNFDNNFWMYAEKDEELLLAKHKKAH 1334

Query: 664  AEFVKVIQDKL----TFYEGQLELIKNR-------IDVENTIKENQPV--HIVRQSFDNA 710
             EF K  +  +    TF     E++  R       +D E+T  +++     +VR+  D  
Sbjct: 1335 YEFAKKKESDIMMDGTFISCNSEIMIKRKNSSSCQVDREHTDYKHKDYIESVVRKFTDEV 1394

Query: 711  SNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQ 770
             N  K +A    + + INKL+       D+                        FSFD+Q
Sbjct: 1395 LN--KKSAKFLHVAKKINKLDEINYTNGDL------------------------FSFDYQ 1428

Query: 771  PDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKL 812
            P+L+NH GPSP                  +RLETIGDSFLKYAIT +LYCTY N+HEGKL
Sbjct: 1429 PELKNHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKL 1488

Query: 813  SHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPAS 872
            SHLRSKQVSN NL++LG+QK+ GESMIATKFEP DNWLPP Y+VPK LE ALIE+G P++
Sbjct: 1489 SHLRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSA 1548

Query: 873  LWNCLSLPNLKELSPEKVLEIIK---QKCVDLDCTVDM----------NVQSVVPYNLVT 919
            LWN   +P L+ ++P ++ ++++   +K V +   +D           N++  +PYNL+T
Sbjct: 1549 LWNQADIPTLQAVNPTEITQLVRETEEKLVIMKSELDKNESRMSNNLDNLRCFIPYNLIT 1608

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP----------------PV 963
            QHSIPDKSIADCVEALIGAYLI CGPRGALLFM+WLG+ V+P                P 
Sbjct: 1609 QHSIPDKSIADCVEALIGAYLIACGPRGALLFMTWLGIHVLPAEEVCVMSESEPEERIPG 1668

Query: 964  TNPESKHLSD---------------------------------VLLDGFDKFEESINYRF 990
            + P  K +S+                                 ++LDG+D+ E+SI Y+F
Sbjct: 1669 STPYVKGISEQGGATWTQICYGKLEEPQNPLLRYIPDPENELRMMLDGYDELEKSIGYKF 1728

Query: 991  KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            +D SYLLQA THASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRS
Sbjct: 1729 RDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALTDLRS 1788

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDE 1109
            ALVNN IFASLAVR GFH +F+HLSPGL  VI RFV++Q EN  ++++EYYL+ E EC+E
Sbjct: 1789 ALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGEEECEE 1848

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            AED+EVPKALGD+FES+AGAIYLDSGMSLD VW VYY IMKSEIE+ S +VPKSPIRELL
Sbjct: 1849 AEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIRELL 1908

Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            ELEPE A+F +PEKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LKS
Sbjct: 1909 ELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLKS 1965


>gi|328716579|ref|XP_001944314.2| PREDICTED: endoribonuclease Dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1609

 Score = 1209 bits (3129), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 651/1276 (51%), Positives = 836/1276 (65%), Gaps = 105/1276 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  AI +VNRYCA+LPSD FT+L+PI     +  ++  MF CSIRLPINSP+K  + GH 
Sbjct: 373  MATAIGLVNRYCAKLPSDTFTKLSPIWKTQSVVYENQPMFVCSIRLPINSPIKHDIHGHP 432

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI------- 113
            MP ++LA RIAA+E CR L+   ELD+ L P+TKE  +   N + V+P   +        
Sbjct: 433  MPCEILAKRIAALEVCRQLHSHGELDDTLQPITKESFHALFNADEVLPDAEDALIPWDTE 492

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            E  P + KRRQ+Y+KR+A    +CRP  N PC+LYA+ + + CP+P+EQN RGR+IHPPE
Sbjct: 493  EPRPGTNKRRQYYYKRIAEALNDCRPVENKPCHLYAILLNMNCPVPEEQNTRGRRIHPPE 552

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILT K+IP +  FPI+TRCGEV VS++ I  ++ L++  L N   F++Y FT 
Sbjct: 553  ESVHGFGILTIKHIPSIPPFPIYTRCGEVYVSLKPIKTDMFLTQHQLDNIATFLNYTFTN 612

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSD-SEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
            VL+L+K  + FDP  + N Y+IVPT+ D S  I IDW F+  + +  ++ +  I  ++R 
Sbjct: 613  VLRLQKCHVAFDPTTTHNCYYIVPTLRDASGSIDIDWNFLDNMHKCRDNKLSIITNEDRM 672

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
            NF  D    +DAVV PWYRNQ +P YFYVAEI T+++P+S FP     Y+TFE+YY LKY
Sbjct: 673  NFQPDIDVLKDAVVTPWYRNQEQPQYFYVAEICTHLNPKSPFPGSIENYKTFEDYYYLKY 732

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             L+IQNLEQPLLDVDHTS RLNFLTPRY+NRKG+ L T+S+ T+R  R++L +KQ+LVPE
Sbjct: 733  SLKIQNLEQPLLDVDHTSARLNFLTPRYMNRKGVILPTSSDATKRAKRDNLSQKQILVPE 792

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC +H FPAS+WRK+VSLP ILYR+NALLLADEIRT VA +I LG V L     W P +F
Sbjct: 793  LCNVHLFPASMWRKAVSLPCILYRINALLLADEIRTIVAKDISLGSVNLSFDHTWEPLDF 852

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDS 532
            GW MK              DV++   E                EI+ +++ +  ETV   
Sbjct: 853  GWTMK--------------DVLIKRKEQK--------------EISIIKVDEPVETVKQF 884

Query: 533  GNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDD- 591
             +E+    EEK+DK   D N         W++IGTWSN+MA          T   +S   
Sbjct: 885  VDEEIK--EEKIDK-SDDPN---------WMDIGTWSNDMADFAMNNIDNTTKVRYSSPT 932

Query: 592  ----EDSNDDLSSVDFDVEDDFRENE-KEDTLQIQFKGKYSAEAICEGEEES-ALKIQDW 645
                +  N+  +  D D +D  + N    + L+I+F+  Y AEA+ E + ++  L     
Sbjct: 933  SWMVQSDNESSTFSDIDSDDGIQVNGLHSNGLRIEFRNTYLAEAVDENDSKTNKLFFFKN 992

Query: 646  IESNFFWEEID----VNHINSKAEFVKVIQDKLTFYEGQLELIKNR-IDVENTIKENQPV 700
             E+   W   D    V   NS  +  ++I     FY+   E+I NR +   + I  +  +
Sbjct: 993  NETPQLWTWNDDCHSVTEYNSNQQDEQIIN---LFYKKDDEIIINREVKSNSNIDSSSLL 1049

Query: 701  HIVRQSFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTS 760
             +  +   N      + ++L+     I + + Y   E ++  +         HG+   T 
Sbjct: 1050 KLPWELNSNTGYGLSDISVLSNNTPFIPEDSKYIKSEININYKINDSVNEV-HGVQTGT- 1107

Query: 761  TPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYC 802
                FSFDFQPDL +H GPSP                  +RLETIGDSFLKYAIT +LYC
Sbjct: 1108 ----FSFDFQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYC 1163

Query: 803  TYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLET 862
            T+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE 
Sbjct: 1164 THDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEK 1223

Query: 863  ALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHS 922
            ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VPYNLVTQHS
Sbjct: 1224 ALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS 1283

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESKHLSDV 974
            IPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P S  L +V
Sbjct: 1284 IPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPPSSPLLRNV 1343

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                     L+DGF+ FE+ + Y F+D+SYLLQAMTHASY+ N LTDCYQRLEFLGDA+L
Sbjct: 1344 DDPEGELTKLMDGFESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVL 1403

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLITRHLYED+R HSPG LTDLRSALVNN IFASLAVR GFH +FKHLSPGL +V+ RF
Sbjct: 1404 DYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRF 1463

Query: 1086 VKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            V +Q EN  T+++E+Y + E +C+EAED+EVPKALGD+FESVAGAIYLDS MSLDTVWKV
Sbjct: 1464 VTIQEENGHTIDEEFYFLGEDDCEEAEDVEVPKALGDVFESVAGAIYLDSNMSLDTVWKV 1523

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
            Y++IM++E+E+ S +VPKSPIRELLELEPE A+FSKPEKLADGRRVRV VE+FGKG +KG
Sbjct: 1524 YHKIMENEMEQFSKNVPKSPIRELLELEPETAKFSKPEKLADGRRVRVVVEIFGKGEFKG 1583

Query: 1205 IGRNYCIAKCTAAKCA 1220
            IGRNY IAKCTAAKCA
Sbjct: 1584 IGRNYRIAKCTAAKCA 1599


>gi|411170363|gb|AFW16070.1| dicer-1 [Nilaparvata lugens]
          Length = 2239

 Score = 1208 bits (3126), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 687/1352 (50%), Positives = 862/1352 (63%), Gaps = 140/1352 (10%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M N++  VNRYCA+LPSD FTRL P  T+  I  ++  M+ C+IRLPINSP+K+ + GH 
Sbjct: 888  MANSVASVNRYCAKLPSDTFTRLTPQATLRRIFFNEQDMYVCTIRLPINSPVKQDIVGHP 947

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVV---------PKTP 111
            MPT++LA RIAAMEACR LYE +ELD++L P+ KE   + ++   V          P+  
Sbjct: 948  MPTRVLARRIAAMEACRTLYEARELDDNLQPIGKERFQMLDSANAVEVAADPDEPPPQLW 1007

Query: 112  EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHP 171
            +IE  P +TKRRQ+Y+KR+A    +CRP       LY + M LTCP+P+EQN RGRK+HP
Sbjct: 1008 DIEPRPGTTKRRQYYYKRIADALNDCRPREGIAAMLYHLDMTLTCPLPEEQNTRGRKLHP 1067

Query: 172  PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
            PE+SPQG  ILT K IPK+C FPIFTR GEV VS+ L D NV L E  +   L F+++ F
Sbjct: 1068 PEDSPQGFGILTLKTIPKICPFPIFTRSGEVRVSLNLCDINVSLDEIQMKKILTFLNFTF 1127

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV-IDWKFMTLISEHHNDVIQDIPEKE 290
            T VL+L+KYLMLFD N  ENSY IVPT  + + ++ +DW F+ +I     +V  DIP+++
Sbjct: 1128 TSVLRLQKYLMLFDENAKENSYLIVPTRKNEQGVIEVDWDFLDVIFVRRTEVPHDIPDEQ 1187

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
            R++F FD +K+ DAVVMPWYRNQ +P YFYVAEI  +++P+S FP     Y+TFEEYY  
Sbjct: 1188 RKDFAFDPAKYLDAVVMPWYRNQDQPQYFYVAEICNHLNPKSSFPGYD--YKTFEEYYYK 1245

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
            KYG  IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV
Sbjct: 1246 KYGYLIQNWSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILV 1305

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
            PELC++HPFPASLWRK+V LP ILYR+NALLLADEIRT V+ EIGLG + LD   +W P 
Sbjct: 1306 PELCMVHPFPASLWRKAVCLPCILYRINALLLADEIRTTVSREIGLGIIHLDPNFDWKPL 1365

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW +  + +K    +K+ N+ +      N  K  D +  +   E  + +  +K ET  
Sbjct: 1366 DFGWSLADVLKK----SKEDNERLAQAKMKNLAKITDGSEAKADEEPKQEDEEEKNET-- 1419

Query: 531  DSGNEQEN--------------EDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV 576
            + G + E               E  +  D+ + D  + E +    W+EIGTWSNEMA G 
Sbjct: 1420 NEGKKTEKTNENKDEKKEEDENEKSKDGDEDEEDGEEKEEEKDAAWMEIGTWSNEMAIGG 1479

Query: 577  ECKPYPMTPPMFS---------------DDEDSNDDLSSVDFDVEDDFRE-------NEK 614
                   T   FS               D  DS +   S D+  +++  E         +
Sbjct: 1480 AFMLDDATIDQFSSIRYGSPSWEMEAGMDYYDSEESADSDDYSADEEHSEAGAGGVGVGR 1539

Query: 615  EDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKL 674
               L+I FK  + AEAI + +++      D       W+  D   I      +++   K 
Sbjct: 1540 PGGLRIMFKSDFLAEAIDDDDDDDDDTHSDDGSLAADWQWHDEEVIGDLEAEIELESKK- 1598

Query: 675  TFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINKLNTYG 734
              Y   +   +  I   NT  ++    ++ +  + AS P  N A  TE  +    +N Y 
Sbjct: 1599 --YGEAVVRNEEYIRRSNTFLKHDECFVIAR--NEASKPQDNDAAATERKDLGFAINGYS 1654

Query: 735  SVEKDVKTEPKSPGKSCEHGIIRNTST----------------PSDFSFDFQPDLENHTG 778
              EK +       G S +  I  ++S+                 S FSFD QP LE+H G
Sbjct: 1655 MPEKMMGCGTSDSGVSLDRSIDGSSSSLGSSSMSDDLDVPDELTSGFSFDSQPALESHPG 1714

Query: 779  PSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQV 820
            PSP                  +RLETIGDSFLK+AIT +LYC Y +VHEGKLSHLRSKQV
Sbjct: 1715 PSPSVLLQALTMSNANDGINLERLETIGDSFLKFAITTYLYCVYESVHEGKLSHLRSKQV 1774

Query: 821  SNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLP 880
            SN NL++LGK K+FGESMIATKFEP DNWLPP YFVPK LE ALIEAG PA  WN   LP
Sbjct: 1775 SNLNLYRLGKHKIFGESMIATKFEPHDNWLPPCYFVPKELERALIEAGVPAFQWNQAELP 1834

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVD------MNVQSVVPYNLVTQHSIPDKSIADCVEA 934
            +L+++S E++  I+K++   L  T+        N+   VP NL+TQHSIPDKSIADCVEA
Sbjct: 1835 SLRDMSTEEINAIVKERGEQLQGTMTDSPLSVENLPCFVPCNLITQHSIPDKSIADCVEA 1894

Query: 935  LIGAYLIECGPRGALLFMSWLGLKVIP--------------------------------- 961
            LIGAYLIECGPRGAL+FMSWLG+KV+P                                 
Sbjct: 1895 LIGAYLIECGPRGALIFMSWLGIKVMPCEEVKVTDDTALERPVGSHLPDQNNVQIRYGFV 1954

Query: 962  -PVTNPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
             P  +P  +H+S+       LL GFD  E S+ YRF D+SYLLQAMTHASY  N LTDCY
Sbjct: 1955 KPPRSPLLRHVSNPECELERLLAGFDVLERSLRYRFNDRSYLLQAMTHASYHTNRLTDCY 2014

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEFLGDA LDYLITRHLYED+R H PG LTDLRSALVNN IFASLAVR GFH +F HL
Sbjct: 2015 QRLEFLGDAALDYLITRHLYEDKRQHCPGDLTDLRSALVNNTIFASLAVRHGFHKYFCHL 2074

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
            SPGL EVI+RFV++Q EN   +++E YL+ E EC+EAED+EVPKALGD+FESVAGAI+LD
Sbjct: 2075 SPGLSEVIERFVRIQEENGHAISEECYLIGEEECEEAEDVEVPKALGDVFESVAGAIFLD 2134

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            SGMSLD VW VYY +MK+EI++ S +VPKSPIRELLELEPE A+F KPEKLADGRRVRV 
Sbjct: 2135 SGMSLDAVWMVYYHMMKNEIDQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVN 2194

Query: 1194 VEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            VEVFGKG+YKGIGRNY IAKCTAAKCALK LK
Sbjct: 2195 VEVFGKGTYKGIGRNYRIAKCTAAKCALKQLK 2226


>gi|383862048|ref|XP_003706496.1| PREDICTED: endoribonuclease Dcr-1-like [Megachile rotundata]
          Length = 1952

 Score = 1204 bits (3115), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/1361 (49%), Positives = 872/1361 (64%), Gaps = 164/1361 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I +I  D+  M+ CS+RLPINSP+K +V+ + 
Sbjct: 616  FNSAISLVNRYCAKLPSDTFTRLTPEWSIEQINSDNMPMYVCSLRLPINSPVKYAVSSYP 675

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 676  MPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDEIKVDFSEA 735

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A+  T+CRP V  P YLY + M L+C +P+EQN RGR+I+PPE S
Sbjct: 736  RPGTTKRRQYYYKKTANALTDCRPIVGAPSYLYHINMVLSCALPEEQNTRGRRIYPPEES 795

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L    VVL+E  +     F++Y FT VL
Sbjct: 796  AIGFGIITLKEIPKLCPFPIYTRSGEVHVQLKLSKCTVVLNEIQIEKISTFLNYTFTNVL 855

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D+E  + +DW+F+  I  +   V   +PE++R++F
Sbjct: 856  RLQQYLMLFDPNASENSYMIVPVKLDTESDVTVDWEFLECIYNNRTTVPTKVPEEDRKDF 915

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK++DAV+MPWYRNQ +P YFYVAEI TN++P+S FP   + Y TFEEYY  KY +
Sbjct: 916  KFDASKYQDAVIMPWYRNQDQPQYFYVAEICTNLNPKSSFPG--DDYSTFEEYYFKKYEI 973

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 974  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1033

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L    EWP  +FGW
Sbjct: 1034 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQQNLAPDFEWPALDFGW 1093

Query: 475  KMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGN 534
             + ++ +K    +K++    V  TE   T + +S  N +    A  E         D  +
Sbjct: 1094 SLAEVLKK----SKESEKTKVAKTE---TTQSNSLSNTVEKYQAMPEKTMNNFNELDMED 1146

Query: 535  EQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAA-GVEC-----KPYPM----- 583
              + E E +L+     + + E    E  +EIGTWSN+MA   ++C     K +P+     
Sbjct: 1147 LNDKEYELELENDNLTDKELEISNEEQELEIGTWSNDMAVNAIDCETNDLKSFPVNVTVL 1206

Query: 584  ------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEA 630
                        +P   SD D   +DD+ S  F    D  E+E    L+I + G+  AEA
Sbjct: 1207 PNNFNWSDIRYGSPACESDYDGYVSDDIYSDGFADTSDESEDENRG-LRISYMGENVAEA 1265

Query: 631  ICE----GEEESALKIQDWIES----NFFW-------EEIDVNHINSKAEFVKV----IQ 671
            I +     ++E   KI D +E+    +  W       E +   H  +  EF K+    I 
Sbjct: 1266 IEDEKQISKQEINKKILDLLETEKNLDTLWSYTEEKEESLIAKHKLTHYEFTKLRECEIM 1325

Query: 672  DKLTFYEGQLELIKNRIDVENT-IKENQPVHIVRQSFDNASNPSKNTAILTEILENINKL 730
            +  +F     E+I  R +  N+  ++N   +  +    N  N        TE+L N N  
Sbjct: 1326 ENGSFISCDNEIIIKRKNSFNSPFEDNSSDYRHKPYVQNIVN-----KFTTEVLNNNN-- 1378

Query: 731  NTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSD--FSFDFQPDLENHTGPSP------- 781
                 + + VK +  S          + T  PS+  FSFDFQP+LENH GPSP       
Sbjct: 1379 -----ISQPVKQKSNSS---------KFTYHPSNNLFSFDFQPELENHPGPSPSLILQAL 1424

Query: 782  -----------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
                       +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+
Sbjct: 1425 TMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGR 1484

Query: 831  QKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKV 890
            QK+ GESMIATKFEP DNWLPP Y+VPK LE ALI++G P++LWN   +P L+ ++P ++
Sbjct: 1485 QKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIKSGIPSTLWNQADIPTLQAVNPNEI 1544

Query: 891  LEIIKQKCVDLDCTVDM-------------NVQSVVPYNLVTQHSIPDKSIADCVEALIG 937
             +++++    L    D              N++  +PYNL+TQHSIPDKSIADCVEALIG
Sbjct: 1545 TQLVRETEQKLGIMKDELVRNEAILSNNLDNLRCFIPYNLITQHSIPDKSIADCVEALIG 1604

Query: 938  AYLIECGPRGALLFMSWLGLKVIP----------------PVTNPESKHLSD-------- 973
            AYLI CGPRGALLFM+WLG+ V+P                P + P  K  +D        
Sbjct: 1605 AYLIACGPRGALLFMAWLGIHVLPMEEICIVQETEPEERIPGSTPYVKGTNDQGEVTWIQ 1664

Query: 974  -------------------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                                     ++LDG+++ E++I Y+F D SYLLQA THASY  N
Sbjct: 1665 IRYGKLEEPQNPLLRYIPNPEQELLMMLDGYEELEKNIGYKFNDISYLLQAFTHASYQPN 1724

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH
Sbjct: 1725 KLTDCYQRLEFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFH 1784

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVA 1127
             +F+HLSPGL  VI RFV++Q EN  ++++EYYL+ E +C+EAED+EVPKALGD+FES+A
Sbjct: 1785 KYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGEEKCEEAEDVEVPKALGDVFESLA 1844

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAIYLDSGMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADG
Sbjct: 1845 GAIYLDSGMSLDAVWSVYYVIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADG 1904

Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228
             RVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LK  +
Sbjct: 1905 HRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLKQMQ 1945


>gi|332020119|gb|EGI60563.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1979

 Score = 1195 bits (3092), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 676/1381 (48%), Positives = 872/1381 (63%), Gaps = 192/1381 (13%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P   I  +   D +M+ C +RLPINSPLK  +T + 
Sbjct: 626  FNSAISLVNRYCAKLPSDTFTRLTPEWRIETVNIHDIMMYICFLRLPINSPLKYVITSYP 685

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTEPVVPKTPE------I 113
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E  VP  P+       
Sbjct: 686  MPNRAMARRMAALQMCIDLHRENEIDDNLLPIGKENFKAKPEDAE--VPALPDESRADFS 743

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            E  P +TKRRQ+Y+K+ A   T+CRP V  P YLY + M L+CP+P+EQN RGR+I+PPE
Sbjct: 744  EARPGTTKRRQYYYKKTAEALTDCRPIVGVPSYLYHINMVLSCPLPEEQNTRGRRIYPPE 803

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILT K IPK+C FPI+TR GEV V ++L  K V+L E  +     F++Y FT 
Sbjct: 804  ESAIGFGILTLKEIPKLCPFPIYTRSGEVHVQLKLSKKTVILDEFQIERVDTFLNYTFTN 863

Query: 234  VLKLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
            VL+L+KYLMLFDPN SENSY IVP       +   I +DW F+  I ++ N V   IPE+
Sbjct: 864  VLRLQKYLMLFDPNASENSYIIVPVKIFATCEGSDISVDWNFLECIYQNRNAVPTKIPEE 923

Query: 290  ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
            +R+NF FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   + Y TFEEYY 
Sbjct: 924  DRKNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--HDYSTFEEYYY 981

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
             KYG+QIQNLEQ LLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L
Sbjct: 982  KKYGIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQIL 1041

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPP 469
            V ELC IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWP 
Sbjct: 1042 VAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAYMINLGQQNLNLDFEWPA 1101

Query: 470  FNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETV 529
             +FGW + ++ ++   +T+    V  ++ + N +  +   +++    I+  +  +K+ T+
Sbjct: 1102 LDFGWSLAEVLKR-SKETEKTKQVKSENAQDN-SSSNSIDISKCQNTISGQDTNNKQYTL 1159

Query: 530  CDSGNEQENEDEEKLDKIKSDENKTESQGVEPW---VEIGTWSNEMAAGVEC-------- 578
            C   NE E + + + D  ++DE   E    E     +EIGTWSN+MA   +         
Sbjct: 1160 C---NEIEKQIKLESDNARTDEETEEDIADEQKDDELEIGTWSNDMAWSNDVTMSMDYDA 1216

Query: 579  ---KPYPMT----------------PPMFSDDEDS--NDDLSSVDFDVEDDFRENEKEDT 617
               K +P+                  P +  D D   +DD+ S  F    D  E+E    
Sbjct: 1217 DNMKSFPLNVTVLPQNFGWNDIRYGSPTYESDFDGYESDDIYSDGFADTSDESEDESRG- 1275

Query: 618  LQIQFKGKYSAEA------ICEGEEESALKIQDWIES-----NFFW-------EEIDVNH 659
            L+I + G+  AEA      IC  ++E   KI D +E+     N FW       E + V H
Sbjct: 1276 LKISYMGENVAEAVEDEKQIC--KQEINKKILDLLETEKNFDNNFWMYTEKDEELLLVKH 1333

Query: 660  INSKAEFVK------VIQDKLTFYEGQLELIKNRIDVENTIKENQP-------VHIVRQS 706
              +  EF K      +I      Y  ++  IK +      I+  +P       +  V + 
Sbjct: 1334 KEAHYEFAKRKEHDIMIDGTFISYNSEIA-IKRKNSSSCQIESKEPNYKHKDYIETVVKR 1392

Query: 707  FDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFS 766
            F +     K T     I + INKLN    +  D+                        FS
Sbjct: 1393 FTDQVLNRKPTVPTCMIKKEINKLNEKNYLNNDL------------------------FS 1428

Query: 767  FDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVH 808
            FD+QP+L+ H+GPSP                  +RLETIGDSFLKYAIT +LYCTY N+H
Sbjct: 1429 FDYQPELKGHSGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIH 1488

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EGKLSHLRSKQVSN NL++LG+QK+ GESMIATKFEP DNWLPP Y+VPK LE ALIE+G
Sbjct: 1489 EGKLSHLRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESG 1548

Query: 869  FPASLWNCLSLPNLKELSPEKVLEIIK---QKCVDLDCTVDM----------NVQSVVPY 915
             P++LWN   +P L+ ++P ++ +++K   +K V +   +D           N++  +PY
Sbjct: 1549 VPSALWNQADIPTLQAMNPTEITQLVKETEEKLVIMKSELDKNESRLSNNLDNLRCFIPY 1608

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-------------- 961
            NL+TQHSIPDKSIADCVEALIGAYLI CGPRGALLFM+WLG+ V+P              
Sbjct: 1609 NLITQHSIPDKSIADCVEALIGAYLIACGPRGALLFMTWLGIHVLPTEEICVISENEPKE 1668

Query: 962  --PVTNPESKHLSD---------------------------------VLLDGFDKFEESI 986
              P + P  K +++                                 ++LDG+++ E+SI
Sbjct: 1669 RIPGSTPYIKGVNEYRETTWTQICYGKLEEPQNPLLRYIPDPESELYMMLDGYEELEKSI 1728

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             Y+F+D SYLLQA THASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LT
Sbjct: 1729 GYKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALT 1788

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EG 1105
            DLRSALVNN IFASLAVR GFH +F+HLSPGL  VI RFV++Q EN  ++++EYYL+ E 
Sbjct: 1789 DLRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGEE 1848

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
            EC+EAED+EVPKALGD+FES+AGAIYLDSGMSLD VW VYY IMKSEIE+ S +VPKSPI
Sbjct: 1849 ECEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPI 1908

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            RELLELEPE A+F +PEKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LK
Sbjct: 1909 RELLELEPETAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1968

Query: 1226 S 1226
            S
Sbjct: 1969 S 1969


>gi|422398915|ref|NP_001116485.2| endoribonuclease Dicer-1 [Apis mellifera]
          Length = 1952

 Score = 1189 bits (3077), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 672/1352 (49%), Positives = 875/1352 (64%), Gaps = 156/1352 (11%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I E+  D+ +M+ CS+RLPINSP+K  V+ + 
Sbjct: 620  FNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSLRLPINSPVKYIVSSYP 679

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP K +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 680  MPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDESKVDFSEA 739

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP +  P YLY + + L+CP+P+EQN RGR+I+PPE S
Sbjct: 740  RPGTTKRRQYYYKKTAEALTDCRPIIGVPSYLYHINLVLSCPLPEEQNTRGRRIYPPEES 799

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L  + ++L+E  +     F++Y FT VL
Sbjct: 800  AIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLTKQTIILNEMQVEKIATFLNYTFTNVL 859

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D +  I +DW F+  I ++ N     IPE+ R+NF
Sbjct: 860  RLQQYLMLFDPNASENSYMIVPVKLDEQSDIAVDWNFLECIYKNRNIGPTKIPEEARKNF 919

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   N Y TFEEYY  KY +
Sbjct: 920  KFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--NDYGTFEEYYLKKYDI 977

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 978  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1037

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWP  +FGW
Sbjct: 1038 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQENLNSDFEWPALDFGW 1097

Query: 475  KMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGN 534
             + ++ +K    +K++    +   E+N T   D+    I  +I +      KE + +S  
Sbjct: 1098 SLAEVLKK----SKESEKTKLIRNELNSTNAIDTKCQNISKDITENLYKLDKEDLNESNY 1153

Query: 535  EQE--NEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA------AGVECKPYPM--- 583
            E +  N+   + ++I +DEN+         +EIGTWS++MA           K +P+   
Sbjct: 1154 EFQLTNDKITEAEQISNDENE---------LEIGTWSSDMAMNSLDFGANNLKSFPLNVT 1204

Query: 584  --------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSA 628
                          +P   SD D   +DD+ S  F    D  E+E    L+I + G+  A
Sbjct: 1205 VLPNEFNWNDIRYGSPACESDFDGYESDDIYSDGFADTSDESEDENRG-LRISYMGENVA 1263

Query: 629  EAICE----GEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELI 684
            EA+ +     ++E   +I D +E+    +EI  ++  +K   V + + KL  Y    E  
Sbjct: 1264 EAVEDEKQISKQEVNKRILDLLETEKNSDEILWSY--AKESEVLITKHKLAHY----EFA 1317

Query: 685  KNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENI--NKLNTYGSVEKDVKT 742
            K R   E  IK+N         ++N     + T+      EN+   K  TY     D  T
Sbjct: 1318 KIR---ECEIKQNGSF----IPYNNKIVIKRKTSFSLHSEENLPNYKYKTYVETVVDKFT 1370

Query: 743  EPKSPGKSCEHGIIRNTSTP--------SDFSFDFQPDLENHTGPSP------------- 781
            +           I +N++TP        + FSFDFQP LENH GPSP             
Sbjct: 1371 QEILNNNETIQPIKKNSNTPKFTYHFDSNLFSFDFQPKLENHPGPSPSLILQALTMSNAN 1430

Query: 782  -----KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
                 +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+QK+ GE
Sbjct: 1431 DGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQKMLGE 1490

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK- 895
            SMIATKFEP DNWLPP Y+VPK LE ALIE+G P++LWN   +P L+ ++P ++ ++++ 
Sbjct: 1491 SMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQAVNPFEITQLVRE 1550

Query: 896  --QKCVDLDCTVDM----------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC 943
              QK   +   +D           N++  +PYNL+TQHSIPDKSIADCVEALIGAYLI C
Sbjct: 1551 TEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIADCVEALIGAYLIAC 1610

Query: 944  GPRGALLFMSWLGLKVIP--------------------PVT------------------- 964
            GPRGALLFM+WLG+ V+P                    P                     
Sbjct: 1611 GPRGALLFMAWLGIHVLPTEEINIIQETEPKDRIPGSTPFVKGKNEKGETIWTQIRYGKL 1670

Query: 965  ----NPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                NP  +++ D      ++LDG+++ E++I Y+F D SYLLQA THASY  N LTDCY
Sbjct: 1671 EEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCY 1730

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F+HL
Sbjct: 1731 QRLEFLGDAVLDYLITRHLYEDTRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHL 1790

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
            SPGL  VI RFV++Q EN  ++++EYYL+ E EC+EAED+EVPKALGD+FES+AGAIYLD
Sbjct: 1791 SPGLSIVINRFVRIQEENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLD 1850

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            SGMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADGRRVRVT
Sbjct: 1851 SGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVT 1910

Query: 1194 VEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            V+VFGKGS+KGIGRNY IAKCTAAKCALK LK
Sbjct: 1911 VDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1942


>gi|380025724|ref|XP_003696618.1| PREDICTED: endoribonuclease Dcr-1-like [Apis florea]
          Length = 1966

 Score = 1189 bits (3076), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 670/1356 (49%), Positives = 874/1356 (64%), Gaps = 163/1356 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I E+  D+ +M+ CS+RLPINSP+K  V+ + 
Sbjct: 620  FNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSLRLPINSPVKYIVSSYP 679

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP K +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 680  MPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDESKVDFSEA 739

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP +  P YLY + + L+CP+P+EQN RGR+I+PPE S
Sbjct: 740  RPGTTKRRQYYYKKTAEALTDCRPIIGVPSYLYHINLVLSCPLPEEQNTRGRRIYPPEES 799

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L  + ++L+E  +     F++Y FT VL
Sbjct: 800  AIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLSKQTIILNEMQVEKIATFLNYTFTNVL 859

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D +  I +DW F+  I ++ N     IPE+ R+NF
Sbjct: 860  RLQQYLMLFDPNASENSYMIVPVKLDEQSDIAVDWNFLECIYKNRNTGPTKIPEETRKNF 919

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   N Y TFEEYY  KY +
Sbjct: 920  KFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--NDYGTFEEYYLKKYDI 977

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 978  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1037

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWP  +FGW
Sbjct: 1038 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQENLNSDFEWPALDFGW 1097

Query: 475  KMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK-VEIVDKKETVCDSG 533
             + ++ +K    +K++    +   EVN T   D+    I  +I + +  +DK++      
Sbjct: 1098 SLAEVLKK----SKESEKAKLIRNEVNSTNAIDTKCQNISKDITENLYKLDKEDL----- 1148

Query: 534  NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV------ECKPYPM---- 583
            NE   E +   DKI   E +  +   E  +EIGTWS++MA           K +P+    
Sbjct: 1149 NESNYEFQLTNDKITETEKQISNDENE--LEIGTWSSDMAMNSLDFGTNNLKSFPLNVTV 1206

Query: 584  -------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAE 629
                         +P   SD D   +DD+ S  F    D  E+E    L+I + G+  AE
Sbjct: 1207 LPNEFNWNDIRYGSPACESDFDGYESDDIYSDGFADTSDESEDENRG-LRISYMGENVAE 1265

Query: 630  AICE----GEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELIK 685
            A+ +     ++E   +I D +E+    +EI  ++  +K   V + + +L  YE       
Sbjct: 1266 AVEDEKQISKQEVNKRILDLLETEKNSDEILWSY--AKESEVLITKHRLAHYEFA----- 1318

Query: 686  NRIDVENTIKENQPVHIVRQS-----FDNASNPSKNTAILTEILENI--NKLNTYGSVEK 738
                    I+E +    ++QS     +DN     + T+      EN+   K  TY     
Sbjct: 1319 -------KIRECE----IKQSGSFIPYDNKIVIKRKTSFSLHSEENLPNYKYKTYVETVV 1367

Query: 739  DVKTEPKSPGKSCEHGIIRNTSTP--------SDFSFDFQPDLENHTGPSP--------- 781
            D  T+           I +N++TP        + FSFDFQP LENH GPSP         
Sbjct: 1368 DKFTQEILNNNETIQPIKKNSNTPKFTYHFDSNLFSFDFQPKLENHPGPSPSLILQALTM 1427

Query: 782  ---------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
                     +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+QK
Sbjct: 1428 SNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQK 1487

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            + GESMIATKFEP DNWLPP Y+VPK LE ALIE+G P++LWN   +P L+ ++P ++ +
Sbjct: 1488 MLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQAVNPFEITQ 1547

Query: 893  IIK---QKCVDLDCTVDM----------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
            +++   QK   +   +D           N++  +PYNL+TQHSIPDKSIADCVEALIGAY
Sbjct: 1548 LVRETEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIADCVEALIGAY 1607

Query: 940  LIECGPRGALLFMSWLGLKVIPP------------------------------------- 962
            LI CGPRGALLFM+WLG+ V+P                                      
Sbjct: 1608 LIACGPRGALLFMAWLGIHVLPTEEISIIQETEPKDRIPGSTPYVKGKNEKGQTIWTQIR 1667

Query: 963  ------VTNPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
                    NP  +++ D      ++LDG+++ E++I Y+F D SYLLQA THASY  N L
Sbjct: 1668 YGKLEEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRL 1727

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            TDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +
Sbjct: 1728 TDCYQRLEFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKY 1787

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGA 1129
            F+HLSPGL  VI RFV++Q EN  ++++EYYL+ E EC+EAED+EVPKALGD+FES+AGA
Sbjct: 1788 FRHLSPGLSIVINRFVRIQEENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGA 1847

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR 1189
            IYLDSGMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADGRR
Sbjct: 1848 IYLDSGMSLDAVWSVYYTIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRR 1907

Query: 1190 VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            VRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK +K
Sbjct: 1908 VRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKIK 1943


>gi|170181362|gb|ACB11577.1| dicer-1 CG4792-PA-like protein [Apis mellifera]
          Length = 1946

 Score = 1187 bits (3072), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 671/1352 (49%), Positives = 873/1352 (64%), Gaps = 156/1352 (11%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I E+  D+ +M+ CS+RLPINSP+K  V+ + 
Sbjct: 620  FNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMNIDNILMYICSLRLPINSPVKYIVSSYP 679

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP K +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 680  MPNKAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDESKVDFSEA 739

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP +  P YLY + + L+CP+P+EQN RGR+I+PPE S
Sbjct: 740  RPGTTKRRQYYYKKTAEALTDCRPIIGVPSYLYHINLVLSCPLPEEQNTRGRRIYPPEES 799

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L  + ++L+E  +     F++Y FT VL
Sbjct: 800  AIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLTKQTIILNEMQVEKIATFLNYTFTNVL 859

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D +  I +DW F+  I ++ N     IPE+ R+NF
Sbjct: 860  RLQQYLMLFDPNASENSYMIVPVKLDEQSDIAVDWNFLECIYKNRNIGPTKIPEEARKNF 919

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   N Y TFEEYY  KY +
Sbjct: 920  KFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--NDYGTFEEYYLKKYDI 977

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 978  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1037

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWP  +FGW
Sbjct: 1038 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQENLNSDFEWPALDFGW 1097

Query: 475  KMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGN 534
             + ++ +K    +K++    +   E+N T   D+    I  +I +      KE + +S  
Sbjct: 1098 SLAEVLKK----SKESEKTKLIRNELNSTNAIDTKCQNISKDITENLYKLDKEDLNESNY 1153

Query: 535  EQE--NEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA------AGVECKPYPM--- 583
            E +  N+   + ++I +DEN+         +EIGTWS++MA           K +P+   
Sbjct: 1154 EFQLTNDKITEAEQISNDENE---------LEIGTWSSDMAMNSLDFGANNLKSFPLNVT 1204

Query: 584  --------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSA 628
                          +P   SD D   +DD+ S  F    D  E+E    L+I + G+  A
Sbjct: 1205 VLPNEFNWNDIRYGSPACESDFDGYESDDIYSDGFADTSDESEDENRG-LRISYMGENVA 1263

Query: 629  EAICE----GEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELI 684
            EA+ +     ++E   +I D +E+    +EI  ++  +K   V + + KL  Y    E  
Sbjct: 1264 EAVEDEKQISKQEVNKRILDLLETEKNSDEILWSY--AKESEVLITKHKLAHY----EFA 1317

Query: 685  KNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENI--NKLNTYGSVEKDVKT 742
            K R   E  IK+N         ++N     + T+      EN+   K  TY     D  T
Sbjct: 1318 KIR---ECEIKQNGSF----IPYNNKIVIKRKTSFSLHSEENLPNYKYKTYVETVVDKFT 1370

Query: 743  EPKSPGKSCEHGIIRNTSTP--------SDFSFDFQPDLENHTGPSP------------- 781
            +           I +N++TP        + FSFDFQP LENH GPSP             
Sbjct: 1371 QEILNNNETIQPIKKNSNTPKFTYHFDSNLFSFDFQPKLENHPGPSPSLILQALTMSNAN 1430

Query: 782  -----KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
                 +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+QK+ GE
Sbjct: 1431 DGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQKMLGE 1490

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK- 895
            SMIATKFEP DNWLPP Y+VPK LE ALIE+G P++LWN   +P L+ ++P ++ ++++ 
Sbjct: 1491 SMIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQAVNPFEITQLVRE 1550

Query: 896  --QKCVDLDCTVDM----------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC 943
              QK   +   +D           N++  +PYNL+TQHSIPDKSIADCVEALIGAYLI C
Sbjct: 1551 TEQKLGVMKNELDRNETTLPNNLDNMRCFIPYNLITQHSIPDKSIADCVEALIGAYLIAC 1610

Query: 944  GPRGALLFMSWLGLKVIP--------------------PVT------------------- 964
            GPRGALLFM+WLG+ V+P                    P                     
Sbjct: 1611 GPRGALLFMAWLGIHVLPTEEINIIQETEPKDRIPGSTPFVKGKNEKGETIWTQIRYGKL 1670

Query: 965  ----NPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                NP  +++ D      ++LDG+++ E++I Y+F D SYLLQA THASY  N LTDCY
Sbjct: 1671 EEPQNPLLRYIVDPEEELKLMLDGYEELEKNIGYKFHDISYLLQAFTHASYQPNRLTDCY 1730

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F+HL
Sbjct: 1731 QRLEFLGDAVLDYLITRHLYEDTRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHL 1790

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
            SPGL  VI RFV++Q EN  ++ +EYYL+ E EC+EAED+EVPKALGD+FES+AGAIYL 
Sbjct: 1791 SPGLSIVINRFVRIQEENGHSIGEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLG 1850

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            SGMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADGRRVRVT
Sbjct: 1851 SGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVT 1910

Query: 1194 VEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            V+VFGKGS+KGIGRNY IAKCTAAKCALK LK
Sbjct: 1911 VDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1942


>gi|340727238|ref|XP_003401955.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dcr-1-like [Bombus
            terrestris]
          Length = 1957

 Score = 1186 bits (3068), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1348 (49%), Positives = 874/1348 (64%), Gaps = 148/1348 (10%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I E+  D+  M+TCS+RLPINSP+K  V  + 
Sbjct: 621  FNSAISLVNRYCAKLPSDTFTRLTPEWSIQEMVVDNKFMYTCSLRLPINSPVKYVVLSYP 680

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 681  MPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDESKVDFSEA 740

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP +  P YLY + + L+CP+P+EQN RGR+I+PPE S
Sbjct: 741  RPGTTKRRQYYYKKTAEALTDCRPIIGVPSYLYHINLVLSCPLPEEQNTRGRRIYPPEES 800

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L  + +VL+E  +    IF++Y FT VL
Sbjct: 801  AIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLSKQTIVLNEMQVEKIAIFLNYTFTNVL 860

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D +  +++DW F+  I ++ N     +PE+ R+NF
Sbjct: 861  RLQQYLMLFDPNASENSYMIVPVKLDEQSDVIVDWNFLECIYKNRNAGPTKVPEEIRKNF 920

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   + Y TFEEYY  KY +
Sbjct: 921  KFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--DDYSTFEEYYLKKYDI 978

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 979  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1038

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWPP +FGW
Sbjct: 1039 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVARMINLGQENLNMDFEWPPLDFGW 1098

Query: 475  KMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEI---CTEIAKVEIVDKKETVCD 531
             + ++        K + +        N+T + +S ++ I   C  I K  I    ++  +
Sbjct: 1099 SLAEV-------LKKSKESEKAKLAKNETIQQNSTIDTIDNKCQNIPKDIIDSLHKSDKE 1151

Query: 532  SGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV------ECKPYPM-- 583
              NE   E + K DKI   E +  +   E  +EIGTWS++MA           K +P+  
Sbjct: 1152 DLNENNYEFQIKNDKIIEIEEQISNDENE--LEIGTWSSDMAMNSLDFETNNLKSFPLNV 1209

Query: 584  ---------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYS 627
                           +P   SD D   +DD+ S  F    D  E+E    L+I + G+  
Sbjct: 1210 TVLPNDFNWSDIRYGSPACESDFDGYESDDIYSDGFVDSSDESEDENRG-LRISYMGENI 1268

Query: 628  AEAICE----GEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYE----G 679
            AEA+ +     ++E+  KI D +E+    +++  ++   K E   + + +   YE     
Sbjct: 1269 AEAVEDEKQMSKQETNKKILDLLETEKSLDDVLWSYTEEK-ENSSITKHRQAHYEFAKVR 1327

Query: 680  QLELIKNR--IDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINK--LNTYGS 735
            + E+++N   I  +N I   +      Q  +N  N  K+   +  ++E   K  LN   +
Sbjct: 1328 EFEIMQNGSFISCDNEIAIKKKASCNLQCEENLPN-YKHKDYVETVVEKFTKKILNNNDT 1386

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP-------------- 781
            V+  +K +  S  K   H      S  + FSFDFQP+LENH GPSP              
Sbjct: 1387 VQL-IKKDSNS-SKFTYH------SDSNLFSFDFQPELENHAGPSPSLILQALTMSNAND 1438

Query: 782  ----KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
                +RLETIGD FLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+QK+ GES
Sbjct: 1439 GINLERLETIGDXFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQKMLGES 1498

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK-- 895
            MIATKFEP DNWLPP Y+VPK LE ALIE+G P++LWN   +P L+ ++P ++ ++++  
Sbjct: 1499 MIATKFEPHDNWLPPCYYVPKELEQALIESGVPSTLWNQADIPALQAVNPSEITQLVRET 1558

Query: 896  -QKCVDLDCTVDMNVQSV----------VPYNLVTQHSIPDKSIADCVEALIGAYLIECG 944
             QK   +   +D N  S+          +PYNL+TQHSIPDKSIADCVEALIGAYLI CG
Sbjct: 1559 EQKLGVMKTELDRNETSLSNNLDNMRCFIPYNLITQHSIPDKSIADCVEALIGAYLIACG 1618

Query: 945  PRGALLFMSWLGLKVIPP--VT-------------------------------------- 964
             RGALLFM+WLG+ V+P   +T                                      
Sbjct: 1619 SRGALLFMAWLGIHVLPTEEITIIQESEPRERVPGSTPYIKGTNEKGQTTWTQIRYGKLE 1678

Query: 965  ---NPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
               NP  +++ D      ++LDG+++ E+SI Y F D SYLLQA THASY  N LTDCYQ
Sbjct: 1679 EPQNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQAFTHASYQPNRLTDCYQ 1738

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F+HLS
Sbjct: 1739 RLEFLGDAVLDYLITRHLYEDARQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHLS 1798

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
            PGL  VI RFV++Q EN  ++++EYYL+ E EC+EAED+EVPKALGD+FES+AGAIYLDS
Sbjct: 1799 PGLSIVINRFVRIQEENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLDS 1858

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
            GMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADGRRVRVTV
Sbjct: 1859 GMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTV 1918

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALK 1222
            +VFGKGS+KGIGRNY IAKCTAAKCALK
Sbjct: 1919 DVFGKGSFKGIGRNYRIAKCTAAKCALK 1946


>gi|307195788|gb|EFN77602.1| Endoribonuclease Dcr-1 [Harpegnathos saltator]
          Length = 1807

 Score = 1185 bits (3065), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1379 (49%), Positives = 869/1379 (63%), Gaps = 209/1379 (15%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I  +  ++  M+TCS+RLPINSP+K  VT + 
Sbjct: 474  FNSAISLVNRYCAKLPSDTFTRLTPEWSIETVNINEVTMYTCSLRLPINSPMKYVVTSYP 533

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTEPVVPKTPE------I 113
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E  VP  P+       
Sbjct: 534  MPNRAMARRMAALQLCIDLHRGNEIDDNLLPIGKENFKAKPEDAE--VPALPDESRADFS 591

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            E  P +TKRRQ+Y+K+ A   T+CRP V  P YLY + M L+CP+P+EQN RGR+I+PPE
Sbjct: 592  EARPGTTKRRQYYYKKTAEALTDCRPIVGVPSYLYHINMVLSCPLPEEQNTRGRRIYPPE 651

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILT K IPK+C FPI+TR GEV V ++L  + V+L +  +     F++Y FT 
Sbjct: 652  ESAIGFGILTLKEIPKLCPFPIYTRSGEVHVQLKLSKQTVILDDVQIERVATFLNYTFTN 711

Query: 234  VLKLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
            VL+L+KYLMLFDPN SENSY IVP    T ++   I +DW F+  I ++ N V   +PE+
Sbjct: 712  VLRLQKYLMLFDPNASENSYIIVPVKIVTTNEGSDISVDWDFLECIYQNRNAVPTKVPEE 771

Query: 290  ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
             R+NF FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   + Y TFEEYY 
Sbjct: 772  VRKNFKFDPSKYYDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--DDYSTFEEYYL 829

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
             KY +QIQNLEQ LLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L
Sbjct: 830  KKYDIQIQNLEQSLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQIL 889

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPP 469
            V ELC IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L    EW  
Sbjct: 890  VAELCAIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVAQMINLGQQNLSSDFEWSA 949

Query: 470  FNFGWKMKKL---KEKYGWDTKDANDVIVDDTE-VNDTKEDDSAVNEI-CTEIAK-VEIV 523
             +FGW + ++    ++     +  N+  +++   V+D  ++ S  + + C E  K +E+ 
Sbjct: 950  LDFGWSLAEVLKKSKEAEKAKQAKNESTLNNCNMVSDMCQNSSNQDHVSCYETGKQLELF 1009

Query: 524  DKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV------E 577
            D          E+EN DE      K+DE           +EIGTWSN+MA          
Sbjct: 1010 DNTRI-----EEEENADE------KNDE-----------LEIGTWSNDMAMNSMDFDTDN 1047

Query: 578  CKPYPMT----------------PPMFSDDEDS--NDDLSSVDFDVEDDFRENEKEDTLQ 619
             KP+P+                  P +  D D   +DD  S  +    D  E+E    L+
Sbjct: 1048 LKPFPLNLTVLPQNFEWNDIRYGSPAYESDFDGYESDDTYSDGYADMSDESEDESRG-LK 1106

Query: 620  IQFKGKYSAEAICEGEE----ESALKIQDWIES-----NFFW--EEID-----VNHINSK 663
            I + G+  AEA+ +  E    E   KI D +E+     N  W   E D       H  + 
Sbjct: 1107 ISYMGENVAEAVEDEREICKQEINKKILDLLETEKNSDNNLWVYAEKDEKLLLAKHEQAH 1166

Query: 664  AEFVK-----VIQDKLTFYEGQLELIKNRID-VENTIKENQPVH--------IVRQSFDN 709
             EF K     +I D  TF     E++  R D +   I E +P +        +V +  D 
Sbjct: 1167 YEFAKQKEHDIINDG-TFISCDSEIVIKRKDSLSCPISEERPDYKHKDYIGTVVERFTDE 1225

Query: 710  ASNPSKNTAILTEIL-ENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFD 768
              N  KN+   TEI+ + I+KL+    +  D+                        FSFD
Sbjct: 1226 VLN--KNSFESTEIVKKRIHKLDETNYLHSDL------------------------FSFD 1259

Query: 769  FQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEG 810
            +QP+L  H GPSP                  +RLETIGDSFLKYAIT +LYCTY N+HEG
Sbjct: 1260 YQPELRGHPGPSPSLILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEG 1319

Query: 811  KLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFP 870
            KLSHLRSKQVSN NL++LG+QK+ GESMIATKFEP DNWLPP Y+VPK LE ALIE+G P
Sbjct: 1320 KLSHLRSKQVSNLNLYRLGRQKMLGESMIATKFEPHDNWLPPCYYVPKELEQALIESGVP 1379

Query: 871  ASLWNCLSLPNLKELSPEKVLEIIK---QKCV-----------DLDCTVDMNVQSVVPYN 916
             +LWN   +P L+ ++P ++ +++K   +K V            L C +D N++  +PYN
Sbjct: 1380 FALWNQADIPTLQAVNPTEINQLVKETEEKLVIMKSELDKNESKLSCNLD-NMRCFIPYN 1438

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP--------------- 961
            L+TQHSIPDKSIADCVEALIGAYLI CGPRGALLFM+WLG+ V+P               
Sbjct: 1439 LITQHSIPDKSIADCVEALIGAYLIACGPRGALLFMAWLGIHVLPTEEVQIVSEDEPEER 1498

Query: 962  -PVTNPESKHLSD---------------------------------VLLDGFDKFEESIN 987
             P + P  K  S+                                 ++LDG+++ E+SI 
Sbjct: 1499 IPGSIPYVKETSEHGEIVWTQIRYGKLEEPQNPLLRYIPDPEGELCMMLDGYEELEKSIG 1558

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            Y+F+D SYLLQA THASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTD
Sbjct: 1559 YKFRDSSYLLQAFTHASYQPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALTD 1618

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGE 1106
            LRSALVNN IFASLAVR GFH +F+HLSPGL  VI RFV++Q EN  ++++EYYL+ + E
Sbjct: 1619 LRSALVNNTIFASLAVRCGFHKYFRHLSPGLSVVINRFVRIQEENGHSISEEYYLIGKEE 1678

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
            C+EAED+EVPKALGD+FES+AGAIYLDSGMSLD VW VYY IMKSEIE+ S +VPKSPIR
Sbjct: 1679 CEEAEDVEVPKALGDVFESLAGAIYLDSGMSLDAVWSVYYTIMKSEIEQFSTNVPKSPIR 1738

Query: 1167 ELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ELLELEPE A+F KPEKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LK
Sbjct: 1739 ELLELEPETAKFGKPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLK 1797


>gi|240247227|emb|CAX68236.1| dicer-1 [Blattella germanica]
          Length = 2271

 Score = 1175 bits (3039), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1435 (47%), Positives = 876/1435 (61%), Gaps = 234/1435 (16%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  A+ +VNRYCA+LPSD FTRL P+  +    ++  I F C++RLPINSP+K+ + G  
Sbjct: 842  MATAVALVNRYCAKLPSDTFTRLTPMWNVKTTSDNGLISFICTVRLPINSPVKQDIVGLP 901

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEP---------VVPKTP 111
            MP+++LA RIAA+E C+VL++ +ELD++LMPV KE   ++E  E          +VP+  
Sbjct: 902  MPSRVLARRIAALETCKVLHKTQELDDNLMPVGKESFRVHEEEETTLALEELEEMVPRD- 960

Query: 112  EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHP 171
              E  P +TKRRQ+Y+KR+A   T+CRP    P YLY + M LTCP+P+EQN RGRKI+P
Sbjct: 961  STEPRPGTTKRRQYYYKRIADSLTDCRPIPGQPAYLYHISMVLTCPLPEEQNTRGRKIYP 1020

Query: 172  PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
            PE+SPQG  ILT K IPK+C FPIFTR GEV V +EL   +VVL+ + L   + F++Y F
Sbjct: 1021 PEDSPQGFGILTLKQIPKICPFPIFTRSGEVRVKLELSGSDVVLTPDKLEKIVTFLNYTF 1080

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV-IDWKFMTLISEHHNDVIQDIPEKE 290
            T VL+L+KYLM+FDP  SENSYFIVPT      I  +DW F+  I E+ +   + +PE+E
Sbjct: 1081 TSVLRLQKYLMMFDPQASENSYFIVPTRKYKGSIAEVDWDFLDRIYENRDLRPRPVPEEE 1140

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
            R  F F+ +K+ DAV+MPWYRNQ +P YFYVAEI  +++P+S FP   + Y+TF+EYY  
Sbjct: 1141 RAGFTFEATKYHDAVIMPWYRNQDQPQYFYVAEICGHLNPKSTFPG--SEYKTFDEYYFK 1198

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
            KY +QIQN +QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV
Sbjct: 1199 KYNIQIQNSKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILV 1258

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
            PELC +HPFPASLWRK+V LP ILYR+NALLLAD+IR  VA  I LG   L    EW P 
Sbjct: 1259 PELCTVHPFPASLWRKAVCLPCILYRINALLLADQIRRHVAFSIALGHENLKSDFEWAPL 1318

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVD-DTEVNDTKEDDSAV---------------NEIC 514
            +FGW +  + +K   + K+A     + D ++ + K +D  +               N+I 
Sbjct: 1319 DFGWSLADVLKKSKENAKNAEQNKENKDKKIEEIKPEDGGIQNKASEEEETKEKSANKIL 1378

Query: 515  TEIAK------VEIVDKKETVCDSGNEQENEDE-EKLDK--------IKSDENKTES--- 556
            TE  K      +EI      + + G    +E E ++ D            DEN   +   
Sbjct: 1379 TEEEKKLRGDWMEIGTWSNDMANHGPMSFSESEIDEFDVNVALPSNLTMVDENAELAGLH 1438

Query: 557  QGVEPW------------VEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDDLSSVDFD 604
             G   W            V  G+ S+ ++ G            F  D+ S++     D+D
Sbjct: 1439 SGGSDWGTGIQARRGRERVRYGSPSSWLSGGGYFGGLEQDLEGFETDDSSSE--PGNDYD 1496

Query: 605  VEDDFRENEKEDTLQIQFKGKYSAEAI------CEGEEESALKIQDWIESN------FFW 652
             + D  + +    L+I+FK +  AEAI       + E+  A   Q+   S       + W
Sbjct: 1497 -QSDSSDIQGTSGLRIEFKSENVAEAIEDEREVQKREKRHATMRQNSENSGSDDQMQWDW 1555

Query: 653  EEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQ------- 705
            E+     I+   E  K ++      E   E+I+N   +   I+ NQP+ IVR+       
Sbjct: 1556 EDDTTEDIDKFTE--KYVEQFRKATEKNQEIIENNGTL---IRNNQPIVIVRKCSQQSVL 1610

Query: 706  --SFDNASN------------PSKNTAILT--------------------EILENINKLN 731
              +  NAS             P+KN  IL                     +  +N + L+
Sbjct: 1611 AHNLSNASTAASDSGVPTVKEPTKNEVILPINHSRQNQHFVLKPSRISLPDKQDNDSGLS 1670

Query: 732  TYGSVE----------KDVKTEPKSPGK--SCEHGIIRNTSTPSDFSFDFQPDLENHTGP 779
              GS E          ++V+++   PG+    E  II      + FSFD QPDL+ H GP
Sbjct: 1671 VDGSSEESEIDFPVTQQNVQSDSDDPGQESDTEEDII------NKFSFDAQPDLQGHPGP 1724

Query: 780  SP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVS 821
            SP                  +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVS
Sbjct: 1725 SPSVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVS 1784

Query: 822  NYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN 881
            N NL++LG++KVFGESMIATKFEP DNWLPP Y+VP+ LE ALIEAG PAS WN   LP 
Sbjct: 1785 NLNLYRLGRRKVFGESMIATKFEPHDNWLPPCYYVPRELEQALIEAGVPASHWNQADLPA 1844

Query: 882  LKELSPEKVLEIIKQKCVDLDCTVDM-------------------NVQSVVPYNLVTQHS 922
            L++LS +++ E+++++   L  T                      N+   +PYNL+TQHS
Sbjct: 1845 LRDLSRDEICELVRERSEKLRKTTMGEDGLPEEVLLTSGPYTNIENLPCFIPYNLITQHS 1904

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI---------------------- 960
            IPDKS+ADCVEALIGAYLI CGPRGALLFM+WLG+ V+                      
Sbjct: 1905 IPDKSVADCVEALIGAYLIACGPRGALLFMAWLGICVLPKEEVIFSMPCAEVKEIRPVGS 1964

Query: 961  ---------------------------PP-------VTNPESKHLSDVLLDGFDKFEESI 986
                                       PP       V+NPE++     LLDG+D FE  I
Sbjct: 1965 TTSVQINGDNTETSCLQWKQVRYGNLKPPRSPLLRSVSNPEAELRR--LLDGYDVFERRI 2022

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             Y+F+D+SYLLQ++THASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LT
Sbjct: 2023 RYKFRDRSYLLQSLTHASYSPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALT 2082

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            DLRSALVNN IFASLAVR GFH +F+HLSPGL+EV+ RFV++Q EN  T+++EYYL+E E
Sbjct: 2083 DLRSALVNNTIFASLAVRYGFHKYFRHLSPGLNEVVDRFVRIQEENGHTISEEYYLIEEE 2142

Query: 1107 CDEAEDIE-VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
              E  +   VPKALGD+FESVAGAI+LDSGMSLD VW+VYY +MKSEIE+ S +VPKSPI
Sbjct: 2143 ECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWRVYYRMMKSEIEQFSTNVPKSPI 2202

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
            RELLELEPE A+F KPEKLADGRRVRVTVEVFGKG++KGIGRNY IAKCTAAKCA
Sbjct: 2203 RELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFKGIGRNYRIAKCTAAKCA 2257


>gi|350423180|ref|XP_003493408.1| PREDICTED: endoribonuclease Dcr-1-like [Bombus impatiens]
          Length = 1934

 Score = 1173 bits (3035), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 661/1342 (49%), Positives = 863/1342 (64%), Gaps = 150/1342 (11%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
             ++AI +VNRYCA+LPSD FTRL P  +I E+  D+  M+TCS+RLPINSP+K  V  + 
Sbjct: 596  FNSAISLVNRYCAKLPSDTFTRLTPEWSIREMIVDNKFMYTCSLRLPINSPVKYVVLSYP 655

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE-PVVPKTPEI---ET 115
            MP + +A R+AA++ C  L+   E+D++L+P+ KE F    E+ E P +P   ++   E 
Sbjct: 656  MPNRAMARRMAALQLCIDLHRKNEIDDNLLPIGKENFKAKPEDAEVPALPDESKVNFSEA 715

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             P +TKRRQ+Y+K+ A   T+CRP +  P YLY + + L+CP+P+EQN RGR+I+PPE S
Sbjct: 716  RPGTTKRRQYYYKKTAEALTDCRPIIGVPSYLYHINLVLSCPLPEEQNTRGRRIYPPEES 775

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              G  I+T K IPK+C FPI+TR GEV V ++L  + +VL+E  +    IF++Y FT VL
Sbjct: 776  AIGFGIITLKEIPKLCPFPIYTRSGEVHVKLKLSKQTIVLNEMQVEKIAIFLNYTFTNVL 835

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQ-IVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            +L++YLMLFDPN SENSY IVP   D +  +++DW F+  I ++ N     +PE+ R+NF
Sbjct: 836  RLQQYLMLFDPNASENSYMIVPVKLDEQSDVIVDWNFLECIYKNRNAGPTKVPEEIRKNF 895

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD SK+ DAV+MPWYR+Q +P YFYVAEI TN++P+S FP   + Y TFEEYY  KY +
Sbjct: 896  KFDASKYHDAVIMPWYRSQDQPQYFYVAEICTNLNPKSSFPG--DDYSTFEEYYLKKYDI 953

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
            QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LV ELC
Sbjct: 954  QIQNLDQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVAELC 1013

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHPFPASLWR++V LP ILYR+NALLLA++IR  VA  I LG+  L+   EWPP +FGW
Sbjct: 1014 AIHPFPASLWRQAVCLPCILYRINALLLANQIRCQVARMINLGQENLNFDFEWPPLDFGW 1073

Query: 475  KMKKLKEKYGWDTKD--ANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDS 532
             + ++ +K     K   A +  +     NDT      ++  C  I K +I+D      D 
Sbjct: 1074 SLAEVLKKSKESEKAKLARNETIQQNSTNDT------IDNKCQNIPK-DIIDSLHK-SDK 1125

Query: 533  GNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV------ECKPYPM--- 583
             +  EN  E ++   K  E        E  +EIGTWS++MA           K +P+   
Sbjct: 1126 EDLNENNYEFQIKNDKIIEIGERMSNDENELEIGTWSSDMAMNSLDFETNNLKSFPLNVT 1185

Query: 584  --------------TPPMFSD-DEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSA 628
                          +P   SD D   +DD+ S  F    D  E+E    L+I + G+  A
Sbjct: 1186 VLPNDFNWSDIRYGSPACESDFDGYESDDIYSDGFVDTSDESEDENRG-LRIAYMGENIA 1244

Query: 629  EAICE----GEEESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYE----GQ 680
            EA+ +     ++ES  KI D +E+    +++  ++   K E   + + +   YE     +
Sbjct: 1245 EAVEDEKQISKQESNKKILDLLETEKSLDDVLWSYTEEK-ENSSITKHRQAHYEFAKVRE 1303

Query: 681  LELIKNR--IDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEI----LENINKLNTYG 734
             E+++N   I  +N I   +      Q  +N  N      + T +     E +N  +T  
Sbjct: 1304 CEIMQNGSFISCDNEIAIKRKASCNLQCEENLPNYKHKDYVETVVEKFTKEILNNNDTVQ 1363

Query: 735  SVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------- 781
             ++KD      +P K   H      S  + FSFDFQP+LENH GPSP             
Sbjct: 1364 LIKKD-----SNPSKFTYH------SDSNLFSFDFQPELENHAGPSPSLILQALTMSNAN 1412

Query: 782  -----KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
                 +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG+QK+ GE
Sbjct: 1413 DGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRQKMLGE 1472

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK- 895
            SMIATKFEP DNWLPP Y+VPK LE ALI++G P++LWN   +P L+ ++P ++ ++++ 
Sbjct: 1473 SMIATKFEPHDNWLPPCYYVPKELEQALIKSGVPSTLWNQADIPALQAVNPSEITQLVRE 1532

Query: 896  --QKCVDLDCTVDM----------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC 943
              QK   +   +D           NV+  +PYNL+TQHSIPDKSIADCVEALIGAYLI C
Sbjct: 1533 TEQKLGVMKTELDRNETSLSNNLDNVRCFIPYNLITQHSIPDKSIADCVEALIGAYLIAC 1592

Query: 944  GPRGALLFMSWLGLKVIPP--VT------------------------------------- 964
            G RGALLFM+WLG+ V+P   +T                                     
Sbjct: 1593 GSRGALLFMAWLGIHVLPTEEITIIQESEPRERVPGSTPYIKGTNEKGQTTWTQIRYGKL 1652

Query: 965  ----NPESKHLSD------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                NP  +++ D      ++LDG+++ E+SI Y F D SYLLQA THASY  N LTDCY
Sbjct: 1653 EEPQNPLLRYIPDPEQELKMMLDGYEELEKSIGYEFHDISYLLQAFTHASYQPNRLTDCY 1712

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F+HL
Sbjct: 1713 QRLEFLGDAVLDYLITRHLYEDGRQHSPGALTDLRSALVNNTIFASLAVRCGFHKYFRHL 1772

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
            SPGL  VI RFV++Q EN  ++++EYYL+ E EC+EAED+EVPKALGD+FES+AGAIYLD
Sbjct: 1773 SPGLSIVINRFVRIQQENGHSISEEYYLIGEEECEEAEDVEVPKALGDVFESLAGAIYLD 1832

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            SGMSLD VW VYY IMK+EIE+ S +VPKSPIRELLELEPE A+F KPEKLADGRRVRVT
Sbjct: 1833 SGMSLDAVWSVYYAIMKNEIEQFSTNVPKSPIRELLELEPETAKFGKPEKLADGRRVRVT 1892

Query: 1194 VEVFGKGSYKGIGRNYCIAKCT 1215
            V+VFGKGS+KGIGRNY IAKCT
Sbjct: 1893 VDVFGKGSFKGIGRNYRIAKCT 1914


>gi|242018047|ref|XP_002429494.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212514432|gb|EEB16756.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 2179

 Score = 1171 bits (3030), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 680/1405 (48%), Positives = 870/1405 (61%), Gaps = 198/1405 (14%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +A+ ++NRYCA+LPSD FTRL PI  I  +KE +  M+ C+IRLPINSP+K+ + G  
Sbjct: 775  LSSAVMLLNRYCAKLPSDTFTRLTPICNIKTVKEFERKMYVCTIRLPINSPIKQEIEGCP 834

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYEN---------TEPVVPKTP 111
            MPT++LA R AA + C++L+   ELD+ L P++KE   + E          TE +V +  
Sbjct: 835  MPTRVLAKRFAAFQCCQLLHLSGELDDTLQPISKESFWIREEGRLTVTNDETEEIVSRD- 893

Query: 112  EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHP 171
             +E  P +TKRRQ+Y+K++A   T+C P  + P +LY + M L+CP+P+EQN RGRKIHP
Sbjct: 894  SLEPRPGTTKRRQYYYKKIADSLTDCLPMADKPSFLYDISMVLSCPLPEEQNTRGRKIHP 953

Query: 172  PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
            PENS QG  ILT K IPK+  FPIFTR GEV+V ++L    V L+E  ++  + F+ Y F
Sbjct: 954  PENSSQGFGILTKKRIPKIGPFPIFTRSGEVQVKLKLAQTTVQLTEIEINKIVAFIHYTF 1013

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPT--VSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
            T VL+L+KYLM+FDPN SENSYFIVPT  V DS+ + +DW F+ LI E  N V   IPE+
Sbjct: 1014 TSVLRLQKYLMMFDPNSSENSYFIVPTKKVKDSDSVEVDWAFLELIYEKRNQVPTFIPEE 1073

Query: 290  ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
             R+NFVF+ SKF DAVV PWYRNQ +P Y YVAEI TN++P+S FP     YQTFEEYY 
Sbjct: 1074 NRKNFVFEPSKFEDAVVSPWYRNQDQPQYLYVAEICTNLNPKSAFPG--TEYQTFEEYYL 1131

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
             KY + IQNL+Q LLDVDHTS RLNFLTPRYVNRKG+ L TTSEE +R  RE+L +KQ+L
Sbjct: 1132 KKYNIVIQNLDQALLDVDHTSARLNFLTPRYVNRKGVALPTTSEEKKRAKRENLKQKQIL 1191

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPP 469
            +PELC IHPFPA+LWRK+V LP IL+R+NALLLAD++R  VA EIG+G + L+E+    P
Sbjct: 1192 IPELCDIHPFPATLWRKAVCLPCILHRINALLLADQVRMIVAEEIGVGSIDLNEEFNGNP 1251

Query: 470  FNFGWK----------MKKLKEKY-----GWDTKDANDVI----VDDTEVNDT-KEDDSA 509
            FN GW           +KK +E+        + KD +D +     D    ND  +E+DS 
Sbjct: 1252 FNLGWSWADVLKQTKILKKQREETPEAVKSIEMKDESDHVNKNNKDTQNCNDNDRENDSD 1311

Query: 510  VNEICTEIAKVEIVDKKETVCDSGNEQ---------------------ENEDEEKLDKIK 548
            +     +    EIV ++    D  ++Q                     ++ D +++D ++
Sbjct: 1312 LKVTLNDSCNTEIVLEESNESDKDDKQWVEIGTWSNDMADDKLENIYDDSHDPDEIDDLR 1371

Query: 549  SDENKT---ESQGVEPWVEIGTWSN----EMAAGVE-CKP--YPMTPPMFSDDEDSNDDL 598
              +N T   E+ G E    I  W +    EM   V  C P  +   P M   D++  D L
Sbjct: 1372 LPKNLTMIEETDGKE----INDWDSKIFSEMKDSVRYCSPTSWLGEPKM---DDEVLDGL 1424

Query: 599  SSVDFDVEDDFRENEKEDT------LQIQFKGKYSAEAICEGEEESALKIQD-------- 644
            S   +  +D F      DT      L+I+FK    AEA+ E    +   I++        
Sbjct: 1425 SESTYS-DDYFDGYMNSDTDSECGGLKIEFKDDNVAEAV-ENNHTATNFIKELNEVEESE 1482

Query: 645  ---WIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIK------ 695
               + ES  + + +D  + N +    K+I   + +Y  +     +R   +N  K      
Sbjct: 1483 PWYYDESEKYSKYVDEFYANVQNRKEKIINSDM-YYSEEKSFDFSRSHSKNYQKTYPGCC 1541

Query: 696  ENQPVHIVRQSFDNASNPSKNTAILTEILENINKLNTYGSV-------EKDVKTEPKSPG 748
            +N       ++F +A N       L E L+N  K   Y  +       E++ +  PK+  
Sbjct: 1542 KNDSQSETSENFGSADN---RLPRLNENLQNDFKSLPYFKIISEVLKREENKQANPKNNV 1598

Query: 749  KSCEHGIIRNTSTP--------SDFSFDFQPDLENHTGPSP------------------K 782
               E   + +   P          FSFD QPDL  H GPSP                  +
Sbjct: 1599 LGFELKTLPSNYKPFEEIDEICQKFSFDEQPDLSGHPGPSPSLILQALTMSNANDGINLE 1658

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            RLETIGDSFLKYAIT +LYC Y NVHEGKLSHLRSKQVSN+NL++LG++K+ GESM+ATK
Sbjct: 1659 RLETIGDSFLKYAITTYLYCIYENVHEGKLSHLRSKQVSNFNLYRLGRKKMLGESMVATK 1718

Query: 843  FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC---- 898
            FEP DNWLPP Y+VP+ LE ALIEAG PAS WN   LP+LK LS E++ +++K+K     
Sbjct: 1719 FEPHDNWLPPCYYVPRELERALIEAGVPASHWNRADLPSLKNLSKEEICQLVKEKGEKLG 1778

Query: 899  ----------VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                      V + C    N+   +PYNL+TQHSIPDKSIADCVEALIGAYL+ CGPRGA
Sbjct: 1779 IVNAEKKPINVTIPCLNLENMPCFIPYNLMTQHSIPDKSIADCVEALIGAYLVACGPRGA 1838

Query: 949  LLFMSWLGLKVIPP---------------------------------------------- 962
            LLFMSWLG+KV+P                                               
Sbjct: 1839 LLFMSWLGIKVLPKEEKFFESENDPDIKKGVGASRPIKVMTNNGEVTFGKLKSPKRPLIC 1898

Query: 963  -VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
             + NPE +   + LL GFD FEESI YRF+D+SYLLQA+THASY+ N LTDCYQRLEFLG
Sbjct: 1899 HIPNPEGE--LEKLLRGFDIFEESIKYRFRDRSYLLQALTHASYYPNRLTDCYQRLEFLG 1956

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            DA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR  FH +F+HL P L+EV
Sbjct: 1957 DAVLDYLITRHLYEDSRHHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLCPSLNEV 2016

Query: 1082 IQRFVKMQAENDFTLN-QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            + RFV+ Q  N   ++ + Y + E EC+EAED+EVPKALGD+FESVAGAI+LDSGMSLD 
Sbjct: 2017 VDRFVRFQQANGHAISEEFYLIEEEECEEAEDVEVPKALGDVFESVAGAIFLDSGMSLDA 2076

Query: 1141 VWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG 1200
            VW+VYY IMK+EIE  S +VPKSPIREL ELEPE A+F KPEKLADGRRVRV+VEVFGKG
Sbjct: 2077 VWRVYYRIMKNEIELFSTNVPKSPIRELFELEPETAQFGKPEKLADGRRVRVSVEVFGKG 2136

Query: 1201 SYKGIGRNYCIAKCTAAKCALKHLK 1225
             + GIGRNY IAKCTAAKCALK LK
Sbjct: 2137 IFNGIGRNYRIAKCTAAKCALKQLK 2161


>gi|156553056|ref|XP_001605287.1| PREDICTED: endoribonuclease Dcr-1 [Nasonia vitripennis]
          Length = 1917

 Score = 1163 bits (3008), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 659/1354 (48%), Positives = 838/1354 (61%), Gaps = 205/1354 (15%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +++AI +VNRYCA+LPSD FT+L P   I+ I  ++  M+ CS+RLPINSPLK S++ + 
Sbjct: 610  LNSAISLVNRYCAKLPSDTFTKLTPEWKINNITVENKQMYICSLRLPINSPLKYSISSYP 669

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLY-ENTEPVVPKTPE------I 113
            MP K LA R+AA++ C  L++  E+D+ L+PV KE    + E++E  VP  P+       
Sbjct: 670  MPNKALAKRMAALQMCVCLHKENEIDDYLLPVGKENFKAHPEDSE--VPALPDDENMDLT 727

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            E  P +TKRRQ+Y+K++A    +C+P +  PCYLY + M L+CP+P+EQN RGRKI+PPE
Sbjct: 728  EARPGTTKRRQYYYKKIADALIDCKPELEEPCYLYHINMVLSCPLPEEQNTRGRKIYPPE 787

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILT K IPKVC FPI+TR GEV V ++L  + VVL E  +   + F++Y FT 
Sbjct: 788  ESDIGFGILTRKKIPKVCPFPIYTRSGEVRVDLKLSKETVVLDESKIDKVVSFLNYTFTN 847

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVS--DSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
            VL+L+KYLMLFDPN SENSY IVP     ++  I +DW F+  I  + + +   I E+ R
Sbjct: 848  VLRLQKYLMLFDPNVSENSYIIVPVKKQPNASDICVDWDFVECIYANRDSMPNRISEENR 907

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +NFVF+ SK+ DAV+MPWYRNQ +P YFYVAEI  +++P+S FP     Y TFEEYYS K
Sbjct: 908  QNFVFEASKYHDAVIMPWYRNQDQPQYFYVAEICNHLNPKSSFPGAD--YSTFEEYYSKK 965

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YG+QIQNLEQPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L+ 
Sbjct: 966  YGIQIQNLEQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILIA 1025

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFN 471
            ELC IHPFPASLWR++V LP ILYR+NALLLAD+IR  VA  I LG+  LDE   WPP +
Sbjct: 1026 ELCAIHPFPASLWRQAVCLPCILYRINALLLADQIRRHVAQSISLGQETLDEDFNWPPLD 1085

Query: 472  FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCD 531
            FGW +  + +K   + K  N    +  + +  KE+  AV E    I       K E + D
Sbjct: 1086 FGWSLADVLKKSKENEK-TNSNKPEKEKSDKIKEEAPAVKEKPENI-------KAERLDD 1137

Query: 532  SGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDD 591
            SGN++                          +EIGTWSNEM              + S+ 
Sbjct: 1138 SGNDE--------------------------MEIGTWSNEMVNMAPVVVADAGLAVQSNY 1171

Query: 592  EDSNDDLSSVDFDVE-DDFREN----------------EKEDTLQIQFKGKYSAEAI--- 631
            E  N    S  +D E DD   N                +KE+ L I + G   AEA    
Sbjct: 1172 EWGNIRYGSPTYDSEFDDASINSSDDDFGDDSDSDSQYDKEEGLTIAYTGDNVAEAFDKK 1231

Query: 632  -----CEGEEESALKIQDWIE----------SNFFWEEIDVNHINSKAEFVKVIQ----- 671
                  E E+++ +++Q+  E          S+ F++   + HI+     V++I      
Sbjct: 1232 GKAFEAEKEKQNCVELQEKSELMHWNFEGDLSDEFYQLHRLAHIDKAKMNVEIILSQDIF 1291

Query: 672  ---DKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENIN 728
               DK   ++ +   + N   VE   K  + V +V   F +            E++E+  
Sbjct: 1292 IPCDKPVAFKRKTSKVLNNSYVER--KHEEYVSVVSNYFKH------------ELIESAK 1337

Query: 729  KLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------- 781
            K        +  K  PK    S              FSFD+QP+L+ H+GPSP       
Sbjct: 1338 KRRNKQGPAELTKLVPKYNKGS--------------FSFDYQPELDGHSGPSPSLILQAL 1383

Query: 782  -----------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
                       +RLETIGDSFLKYAIT +L+CTY N+HEGKLSHLRSKQVSN NL++LG+
Sbjct: 1384 TMSNANDGINLERLETIGDSFLKYAITTYLFCTYNNIHEGKLSHLRSKQVSNLNLYRLGR 1443

Query: 831  QKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---- 886
            QK+ GESMIA+KFEP DNWLPP Y+VPK LE ALIE+G P+++WN   +P     S    
Sbjct: 1444 QKMLGESMIASKFEPHDNWLPPCYYVPKELEQALIESGVPSAMWNQADIPPFSRFSEIND 1503

Query: 887  ----PEKVLEIIKQKCVD--------LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEA 934
                 E  LEIIK +           L+      ++S +PYNL+TQHSIPDKSIADCVEA
Sbjct: 1504 LVRETEHKLEIIKSELSQSEHGALNGLNGLTGDPLRSFIPYNLITQHSIPDKSIADCVEA 1563

Query: 935  LIGAYLIECGPRGALLFMSWLGLKVIPP---VTNPESKHLS------------------- 972
            LIGAYLI CGPRGALLFMSWLG+ V+P    VT  +SK                      
Sbjct: 1564 LIGAYLIACGPRGALLFMSWLGIHVLPTEEVVTISDSKPTDRLPGSTPYVELGEEGGSTK 1623

Query: 973  ---------------------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
                                       +++LDG+D  E SI Y F+++SYLLQA THASY
Sbjct: 1624 WTQLRYKKLQEPPSPLFYNVPQPEIELEIMLDGYDSLERSIGYTFRNRSYLLQAFTHASY 1683

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR 
Sbjct: 1684 QPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRC 1743

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM----EGECDEAEDIEVPKALGD 1121
            GFH +F+HLSPGL+ VI RFV++Q EN  ++++EYYL+      E +EAED+EVPKALGD
Sbjct: 1744 GFHKYFRHLSPGLNTVIDRFVRIQEENGHSISEEYYLIGEREFEEAEEAEDVEVPKALGD 1803

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP 1181
            +FES+AGAIYLDS MSLD VW VY+EIMKSEIE+ S +VPKSPIRELLELEPE A+F KP
Sbjct: 1804 VFESLAGAIYLDSNMSLDAVWAVYFEIMKSEIEQFSANVPKSPIRELLELEPETAKFGKP 1863

Query: 1182 EKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCT 1215
            EKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCT
Sbjct: 1864 EKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCT 1897


>gi|388330447|gb|AFK29469.1| Dicer1 [Locusta migratoria]
          Length = 2324

 Score = 1125 bits (2909), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 668/1476 (45%), Positives = 885/1476 (59%), Gaps = 270/1476 (18%)

Query: 1    MDNAIFIVNRY-----------CARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPIN 49
            M  AI +VNRY           CA+LPSD FTRL+P+ ++     D  I + C++RLPIN
Sbjct: 849  MSTAIGLVNRYSPSCDAAPGVYCAKLPSDTFTRLSPLWSLKTEDIDGKIHYICTVRLPIN 908

Query: 50   SPLKRSVT--------------------------GHKMPTKLLAWRIAAMEACRVLYELK 83
            SP+K ++                           G  MPT++LA RIAA+E CR+L++ +
Sbjct: 909  SPVKHNIVADVKRTLYYVRYETFVPICIVKNDTQGLPMPTRVLARRIAALETCRILHQAR 968

Query: 84   ELDNDLMPVTKEFINLYENTEPV--------VPKTPEIETYPDSTKRRQFYHKRMASCFT 135
            ELD++LMPV KE   ++E  +                +E  P +TKRRQ+Y+KR++   T
Sbjct: 969  ELDDNLMPVGKERFYIHEECDQFCDPDDLEDTASRDSLEPKPGTTKRRQYYYKRISEALT 1028

Query: 136  NCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI 195
            +CRP+V  P +LY + M LTCP+P+EQN RGRKI+PPE+S QG  ILT+K IPK+C FPI
Sbjct: 1029 DCRPAVGEPSFLYNLGMVLTCPLPEEQNTRGRKIYPPEDSLQGFGILTSKTIPKICPFPI 1088

Query: 196  FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFI 255
            FTR GEV V +EL D NVVL++E +S  + F++Y FT VL+L+KYLM+FDP  SENSYFI
Sbjct: 1089 FTRSGEVSVKLELSDTNVVLTKEKISMIVTFLNYTFTSVLRLQKYLMMFDPQASENSYFI 1148

Query: 256  VPTVSDSEQIV--IDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQ 313
            VPT   ++  +  +DW+F+  I +  +   Q +P++ER  FVFD +K+ DAV+MPWYRNQ
Sbjct: 1149 VPTRKKTKDSLAEVDWEFLERIYKECDLRPQPVPQEERALFVFDAAKYHDAVIMPWYRNQ 1208

Query: 314  FEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
             +P YFYVAEI ++++P+S FP   + Y+TF+EYY  KY +QIQN +QPLLDVDHTS RL
Sbjct: 1209 DQPQYFYVAEICSHLNPKSTFPG--SEYKTFDEYYFKKYNIQIQNEKQPLLDVDHTSARL 1266

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
            NFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVPELC +HPFPASLWRK+V LP I
Sbjct: 1267 NFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASLWRKAVCLPCI 1326

Query: 434  LYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDV 493
            LYR+NALLLAD+IR  VA++I LG   L    EWPP NFGW +  + +K   +   A + 
Sbjct: 1327 LYRINALLLADQIRCQVANDIALGGEELPADFEWPPLNFGWSLADVLKKPKENAAKALET 1386

Query: 494  -IVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIK---- 548
             +V   E ++T +     N +  EI ++   +K++T  +   E+EN+   +  +I     
Sbjct: 1387 KMVSFDEDSETSKSSKTSNGV--EITEIYSEEKQKTANEILTEEENKLSGEWMEIGTWSN 1444

Query: 549  --SDENKTESQGVEPW---------------------VEIGTWSNEMAAGVECK-----P 580
              +++N  ES  ++ +                     +  G  S++   G+E +      
Sbjct: 1445 DMAEKNPMESGDIDEFDPNIALPSNLTLLGHDSELADLHNGGGSSDWGTGIEAQFEGKVR 1504

Query: 581  YPMTPPMFSDDEDSNDDLSSVDFDVED------------DFRENEKEDTLQIQFKGKYSA 628
            Y       + D  +N D   + ++ +D            D+   +    ++I+FK    A
Sbjct: 1505 YGSPSSWMTADHFTNFDGDCIGYESDDSYNDLVHETDSFDYSAFQVHSGIRIEFKSDNVA 1564

Query: 629  EAICEGEEES---ALKIQDWI--------ESNFFWE-----EIDVNHINSKAEFVK--VI 670
            EA+ E E E+   ALK  + +        E  + W+     E+DVNH N      K  + 
Sbjct: 1565 EAV-EDEPETKQLALKSSNAVVTTSAVASEVPWNWDMAVALELDVNHFNQSDSDSKSDIE 1623

Query: 671  QDKLTFYEGQLELIKNRIDVENT------------IKENQPVHIVRQSFDNASNPSKNTA 718
             DK+T      EL  NR D                I++++P+ IVR S  + +   +NT 
Sbjct: 1624 SDKIT------ELYANRFDEATKKNICYIRKSGILIRKDEPLRIVR-SLSSCAGQVQNTP 1676

Query: 719  I------------------------LTEILENINKLNTYGSVEKDVKTEPK----SPGKS 750
            +                          +I+ N++KL      + +++T+      S    
Sbjct: 1677 VEIHIQRSVNESLLQNGFSHSQFVAGCKIIFNVSKLTLNDDDDAELETKEALYMASGAIM 1736

Query: 751  CEHGIIRNTSTP----------------SDFSFDFQPDLENHTGPSP------------- 781
            C+  ++                      S FSFD QP+LE HTGPSP             
Sbjct: 1737 CDRRLLWKDDDDDDEEEEEEEEEEEDIISKFSFDAQPELEGHTGPSPSIILQALTMSNAN 1796

Query: 782  -----KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
                 +RLETIGDSFLKYAIT +LYCTY N+HEGKLSHLRSKQVSN NL++LG++KVFGE
Sbjct: 1797 DGINLERLETIGDSFLKYAITTYLYCTYDNIHEGKLSHLRSKQVSNLNLYRLGRRKVFGE 1856

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            SMIATKFEP DNWLPP Y+VP+ LE AL+EAG PAS WN   +PNL  LS E++ E++++
Sbjct: 1857 SMIATKFEPHDNWLPPCYYVPRELEQALVEAGIPASHWNRADIPNLLPLSREEICELVRE 1916

Query: 897  KCVDL----DCTVD-MNVQS-----------VVPYNLVTQHSIPDKSIADCVEALI---- 936
            +C       DC  D M  QS            +PYNL+TQHSIPDKS+ADCVEALI    
Sbjct: 1917 RCNQFQRCKDCDEDGMPTQSEDYDSVDKMPCFIPYNLITQHSIPDKSVADCVEALIGAYL 1976

Query: 937  ------GAYL------IECGPRGALLFMS-----------------------------WL 955
                  GA L      I   PR  ++  +                             W 
Sbjct: 1977 IACGPRGALLFMAWLGICVLPREEIILKTSSRNAVPKERPVGSLKPTFVYEDSDGTAVWK 2036

Query: 956  GLK----------VIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
             ++          ++  V+NPE K   + LLDGFD FE+ I Y+F+D+SYLLQ++THASY
Sbjct: 2037 QVRYGTLQSPSSPLLRNVSNPERK--LEALLDGFDVFEQKIQYKFRDRSYLLQSLTHASY 2094

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR 
Sbjct: 2095 SPNRLTDCYQRLEFLGDAVLDYLITRHLYEDSRQHSPGALTDLRSALVNNTIFASLAVRY 2154

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN-QEYYLMEGECDEAEDIEVPKALGDLFE 1124
            GFH FF+HLSPGL+EV+ RFV++Q EN  T++ + Y + E EC+EAED+EVPKALGD+FE
Sbjct: 2155 GFHKFFRHLSPGLNEVVDRFVRIQEENGHTISEEYYLIEEEECEEAEDVEVPKALGDVFE 2214

Query: 1125 SVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKL 1184
            SVAGAI+LDS MSLD VW+VYY +MK EIE+ S +VPKSPIRELLELEPE A+F KPEKL
Sbjct: 2215 SVAGAIFLDSNMSLDAVWRVYYRMMKLEIEQFSTNVPKSPIRELLELEPETAKFGKPEKL 2274

Query: 1185 ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
            ADGRRVRV+VEVFGKG +KGIGRNY IAKCTAAKCA
Sbjct: 2275 ADGRRVRVSVEVFGKGIFKGIGRNYRIAKCTAAKCA 2310


>gi|328716581|ref|XP_003245985.1| PREDICTED: endoribonuclease Dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1489

 Score = 1008 bits (2606), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 555/1154 (48%), Positives = 724/1154 (62%), Gaps = 104/1154 (9%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  AI +VNRYCA+LPSD FT+L+PI     +  ++  MF CSIRLPINSP+K  + GH 
Sbjct: 373  MATAIGLVNRYCAKLPSDTFTKLSPIWKTQSVVYENQPMFVCSIRLPINSPIKHDIHGHP 432

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI------- 113
            MP ++LA RIAA+E CR L+   ELD+ L P+TKE  +   N + V+P   +        
Sbjct: 433  MPCEILAKRIAALEVCRQLHSHGELDDTLQPITKESFHALFNADEVLPDAEDALIPWDTE 492

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            E  P + KRRQ+Y+KR+A    +CRP  N PC+LYA+ + + CP+P+EQN RGR+IHPPE
Sbjct: 493  EPRPGTNKRRQYYYKRIAEALNDCRPVENKPCHLYAILLNMNCPVPEEQNTRGRRIHPPE 552

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILT K+IP +  FPI+TRCGEV VS++ I  ++ L++  L N   F++Y FT 
Sbjct: 553  ESVHGFGILTIKHIPSIPPFPIYTRCGEVYVSLKPIKTDMFLTQHQLDNIATFLNYTFTN 612

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSD-SEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
            VL+L+K  + FDP  + N Y+IVPT+ D S  I IDW F+  + +  ++ +  I  ++R 
Sbjct: 613  VLRLQKCHVAFDPTTTHNCYYIVPTLRDASGSIDIDWNFLDNMHKCRDNKLSIITNEDRM 672

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
            NF  D    +DAVV PWYRNQ +P YFYVAEI T+++P+S FP     Y+TFE+YY LKY
Sbjct: 673  NFQPDIDVLKDAVVTPWYRNQEQPQYFYVAEICTHLNPKSPFPGSIENYKTFEDYYYLKY 732

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             L+IQNLEQPLLDVDHTS RLNFLTPRY+NRKG+ L T+S+ T+R  R++L +KQ+LVPE
Sbjct: 733  SLKIQNLEQPLLDVDHTSARLNFLTPRYMNRKGVILPTSSDATKRAKRDNLSQKQILVPE 792

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC +H FPAS+WRK+VSLP ILYR+NALLLADEIRT VA +I LG V L     W P +F
Sbjct: 793  LCNVHLFPASMWRKAVSLPCILYRINALLLADEIRTIVAKDISLGSVNLSFDHTWEPLDF 852

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDS 532
            GW MK              DV++   E                EI+ +++ +  ETV   
Sbjct: 853  GWTMK--------------DVLIKRKEQK--------------EISIIKVDEPVETVKQF 884

Query: 533  GNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDD- 591
             +E+    EEK+DK   D N         W++IGTWSN+MA          T   +S   
Sbjct: 885  VDEEIK--EEKIDK-SDDPN---------WMDIGTWSNDMADFAMNNIDNTTKVRYSSPT 932

Query: 592  ----EDSNDDLSSVDFDVEDDFRENE-KEDTLQIQFKGKYSAEAICEGEEES-ALKIQDW 645
                +  N+  +  D D +D  + N    + L+I+F+  Y AEA+ E + ++  L     
Sbjct: 933  SWMVQSDNESSTFSDIDSDDGIQVNGLHSNGLRIEFRNTYLAEAVDENDSKTNKLFFFKN 992

Query: 646  IESNFFWEEID----VNHINSKAEFVKVIQDKLTFYEGQLELIKNR-IDVENTIKENQPV 700
             E+   W   D    V   NS  +  ++I     FY+   E+I NR +   + I  +  +
Sbjct: 993  NETPQLWTWNDDCHSVTEYNSNQQDEQIIN---LFYKKDDEIIINREVKSNSNIDSSSLL 1049

Query: 701  HIVRQSFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTS 760
             +  +   N      + ++L+     I + + Y   E ++  +         HG+   T 
Sbjct: 1050 KLPWELNSNTGYGLSDISVLSNNTPFIPEDSKYIKSEININYKINDSVNEV-HGVQTGT- 1107

Query: 761  TPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYC 802
                FSFDFQPDL +H GPSP                  +RLETIGDSFLKYAIT +LYC
Sbjct: 1108 ----FSFDFQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYC 1163

Query: 803  TYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLET 862
            T+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE 
Sbjct: 1164 THDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEK 1223

Query: 863  ALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHS 922
            ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VPYNLVTQHS
Sbjct: 1224 ALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDIENTPLFVPYNLVTQHS 1283

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESKHLSDV 974
            IPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P S  L +V
Sbjct: 1284 IPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPPSSPLLRNV 1343

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                     L+DGF+ FE+ + Y F+D+SYLLQAMTHASY+ N LTDCYQRLEFLGDA+L
Sbjct: 1344 DDPEGELTKLMDGFESFEQHLGYHFQDRSYLLQAMTHASYYPNRLTDCYQRLEFLGDAVL 1403

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLITRHLYED+R HSPG LTDLRSALVNN IFASLAVR GFH +FKHLSPGL +V+ RF
Sbjct: 1404 DYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVRNGFHKYFKHLSPGLSDVVCRF 1463

Query: 1086 VKMQAENDFTLNQE 1099
            V +Q EN  T+++E
Sbjct: 1464 VTIQEENGHTIDEE 1477


>gi|157120736|ref|XP_001659747.1| dicer-1 [Aedes aegypti]
 gi|108883036|gb|EAT47261.1| AAEL001612-PA [Aedes aegypti]
          Length = 2193

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 335/553 (60%), Positives = 396/553 (71%), Gaps = 86/553 (15%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFL 800
            T  P +FSFD+QP+L NH GPSP                  +RLETIGDSFLKYAIT +L
Sbjct: 1632 TDNPDEFSFDYQPNLNNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYL 1691

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYL 860
            YCTY NVHEGKLSHLRSKQVSN NL++LG++KV GESMIATKFEP DNWLPP Y+VPK L
Sbjct: 1692 YCTYENVHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKEL 1751

Query: 861  ETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMN---------VQS 911
            E ALI+A  PA  WN   LP++K+LS E++  ++K++ + L    D +         +Q 
Sbjct: 1752 EQALIDAKIPACHWNLADLPDIKQLSSEEICRLVKERALALGLLDDSDNEEGETMKEIQQ 1811

Query: 912  V-----------------VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
            +                 +PYNLVTQHSIPDKS+ADCVEALIGAYLIECGPRGALL M+W
Sbjct: 1812 LETRNDEFIKNAEYFACFIPYNLVTQHSIPDKSVADCVEALIGAYLIECGPRGALLLMAW 1871

Query: 955  LGLKVIP-------------PVTN----------------------------PESKHLSD 973
            LG++V+P             P ++                            P  +   +
Sbjct: 1872 LGIRVLPVYEVPYDENNPKVPGSSQRYEKDGIAMQSVYGYWVPPKSPLLMYAPNPQQTLE 1931

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
             LLDG+  FE+S+ Y+F D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHL
Sbjct: 1932 HLLDGYSAFEDSLGYQFTDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHL 1991

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            YED R HSPG LTDLRSALVNN IFASLAVR  FH +F+HLSPGL++VI RFV++Q +N 
Sbjct: 1992 YEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNG 2051

Query: 1094 FTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
              +++EYYL+ E ECDEAED+EVPKALGD+FESVAGAI+LDS MSLD VWKVY  +M  E
Sbjct: 2052 HIISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPE 2111

Query: 1153 IERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            IE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTVEVFGKG+++GIGRNY IA
Sbjct: 2112 IEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIA 2171

Query: 1213 KCTAAKCALKHLK 1225
            KCTAAKCAL+ LK
Sbjct: 2172 KCTAAKCALRQLK 2184



 Score =  576 bits (1484), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/589 (49%), Positives = 399/589 (67%), Gaps = 25/589 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI +VN+YCA+LPSD FT+L P+   ++   +   ++ C+IR+PINSPLK  + G  
Sbjct: 757  LSNAIQMVNKYCAKLPSDTFTKLTPLWRGAKTVRNGQELYQCTIRMPINSPLKEDIVGLP 816

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE----------NTEPVVPKT 110
            MPT++LA R+AA  ACRVL++  ELD+ L P+ KE    +E          N   +V + 
Sbjct: 817  MPTEILARRMAAYTACRVLHKAGELDDSLQPIGKESFRAFEADWEDFELESNDAQIVIEN 876

Query: 111  PEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIH 170
             E    P +TKRRQ+Y+KR+AS F+ CRP++ +  YLY + M L CPIP+EQN RGRKI+
Sbjct: 877  SE--PRPGTTKRRQYYYKRIASAFSECRPTIGSKVYLYHINMTLQCPIPEEQNTRGRKIY 934

Query: 171  PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYL 230
            PPE+SPQG  ILTTK IPKV +FPIFTR GEV+V++ L D+  +L++E L    +F++Y 
Sbjct: 935  PPEDSPQGFGILTTKLIPKVSAFPIFTRSGEVKVALNLCDERPILNQEQLERIHMFINYT 994

Query: 231  FTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE 290
            FTKVL+L+KYLML+DP+  EN +FIVPT++    + +DW F+  I+++ + +   IP++ 
Sbjct: 995  FTKVLRLQKYLMLYDPDAMENCFFIVPTITRESVVTVDWNFIDTIAKNVDKMPTFIPDEN 1054

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
            R+N+ FD ++F+DAVVMPWYRNQ +P YFYVAEI  ++ P+S FP     Y TFEEYY  
Sbjct: 1055 RKNYTFDSNQFKDAVVMPWYRNQDQPQYFYVAEICYHLSPKSSFPGL--NYSTFEEYYYK 1112

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
            KY +QIQN +QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L+
Sbjct: 1113 KYSIQIQNCKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILI 1172

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWPP 469
            PELC IHPFPASLWR +V LP ILYR+NALLLADEIR  VA ++GLG   I DE  EWP 
Sbjct: 1173 PELCTIHPFPASLWRAAVCLPCILYRINALLLADEIRKEVAHDLGLGTTDIADESFEWPI 1232

Query: 470  FNFGWKMKKLKEKYGWDTKDANDVI-VDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
             NFGW +  + +K      +A   + +  +E N  +  +  + E  ++ +     +KKE 
Sbjct: 1233 LNFGWSLADVLKKSREAKLNAQSAVEMPPSETNKIEVLEEEITEKESDKSAAIEEEKKE- 1291

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVE 577
                  E E E++   D ++  + K +++G     +IGTWSNEMA   E
Sbjct: 1292 ----NGEIEKEEKTANDLLEEADKKLKAEG----FQIGTWSNEMAETFE 1332


>gi|170033786|ref|XP_001844757.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
 gi|167874834|gb|EDS38217.1| endoribonuclease Dcr-1 [Culex quinquefasciatus]
          Length = 2270

 Score =  665 bits (1716), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 334/549 (60%), Positives = 394/549 (71%), Gaps = 86/549 (15%)

Query: 763  SDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTY 804
             +FSFD+QPDL NH GPSP                  +RLETIGDSFLKYAIT +LYCTY
Sbjct: 1713 GEFSFDYQPDLTNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCTY 1772

Query: 805  PNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETAL 864
             NVHEGKLSHLRSKQVSN NL++LG++KV GESMIATKFEP DNWLPP Y+VPK LE AL
Sbjct: 1773 ENVHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKELEQAL 1832

Query: 865  IEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMN---------VQSV--- 912
            I+A  PA  WN   LP++K+LS E++ +++K++   L    D +         +Q +   
Sbjct: 1833 IDAKIPACHWNLADLPDIKQLSSEEICKLVKERAQLLGLLDDSDNEEGEHMKEIQQLEIR 1892

Query: 913  --------------VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                          +PYNLVTQHSIPDKS+ADCVEALIGAYLIECGPRGALL M+WLG++
Sbjct: 1893 NDEFIKNSDYFACFIPYNLVTQHSIPDKSVADCVEALIGAYLIECGPRGALLLMAWLGIR 1952

Query: 959  VIPPVTNP-----------------ESKHLSDV------------------------LLD 977
            V+P    P                   K +  +                        LLD
Sbjct: 1953 VLPVCEQPFDPTAPRIPGSSAPYEVNGKQIQSIYGYWIPPRSPLLTHAPNPEKSLEHLLD 2012

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            G+  FE+S+ YRF+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED 
Sbjct: 2013 GYSAFEDSLGYRFQDRSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHLYEDP 2072

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
            R HSPG LTDLRSALVNN IFASLAVR  FH +F+HLSPGL++VI RFV++Q +N  +++
Sbjct: 2073 RQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNGHSIS 2132

Query: 1098 QEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
            +EYYL+ E ECDEAED+EVPKALGD+FESVAGAI+LDS MSLD VW+VY  +M  EIE+ 
Sbjct: 2133 EEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWRVYRGMMGPEIEQF 2192

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
            S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTVEVFGKG+++GIGRNY IAKCTA
Sbjct: 2193 SNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIAKCTA 2252

Query: 1217 AKCALKHLK 1225
            AKCAL+ LK
Sbjct: 2253 AKCALRQLK 2261



 Score =  508 bits (1307), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 263/536 (49%), Positives = 351/536 (65%), Gaps = 39/536 (7%)

Query: 58   GHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE------NTEPVVPK-- 109
            G  MPT++LA R+AA  ACRVL+   E+D+ L P+ KE    +E        E +  +  
Sbjct: 902  GLPMPTEILARRMAAYIACRVLHNAGEIDDSLHPIGKESFRAFEADWEDFELESIDAQIV 961

Query: 110  TPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
            +   E  P +TKRRQ+Y+KR+AS F+ CRP+V    YLY + M L CPIP+EQN RGR+I
Sbjct: 962  SENSEPRPGTTKRRQYYYKRIASAFSECRPTVGCKVYLYHINMTLQCPIPEEQNTRGRRI 1021

Query: 170  HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDY 229
            +PPE+SPQG  ILT K IPKV +FPIFTR GEV+V++ L  +  +L++E L    +F++Y
Sbjct: 1022 YPPEDSPQGFGILTAKLIPKVSAFPIFTRSGEVKVALNLCAERTILNQEQLDKINLFINY 1081

Query: 230  LFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
             FTKVL+L+KYLML+DP  +EN +FIVPT++    + +DW F+ +I++  + +   IP++
Sbjct: 1082 TFTKVLRLQKYLMLYDPMATENCFFIVPTITRQSVVTVDWDFIDIIAKSVDKMPTFIPDE 1141

Query: 290  ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
             R N+ FD  +FRDAVVMPWYRNQ +P YFYVAEI  ++ P+S FP     Y TFEEYY 
Sbjct: 1142 NRTNYTFDNIQFRDAVVMPWYRNQDQPQYFYVAEICYHLSPKSSFPGL--NYSTFEEYYY 1199

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
             KY +QIQN +QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L
Sbjct: 1200 KKYNIQIQNCKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQIL 1259

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWP 468
            +PELC IHPFPASLWR +V LP ILYR+NALLLADEIR  VA ++GLG   I D + EWP
Sbjct: 1260 IPELCTIHPFPASLWRAAVCLPCILYRINALLLADEIRKEVAHDLGLGATDISDAQFEWP 1319

Query: 469  PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
              NFGW +               DV+    E   T +   AV E   E+ + E  DKK+ 
Sbjct: 1320 ILNFGWSLA--------------DVLKKSREAKLTAK---AVLEEVPELTEPEETDKKDD 1362

Query: 529  VCDSGNEQENEDEEKL-------DKIKSDENKTESQGVEPWVEIGTWSNEMAAGVE 577
              +   +   + E+ L       D ++  + K +++G     +IGTWSNEMA  V+
Sbjct: 1363 PVEGKADGVQKSEDPLSDEKTANDLLEEADAKLKAEG----FQIGTWSNEMAESVQ 1414



 Score = 60.8 bits (146), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 25/61 (40%), Positives = 40/61 (65%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + NAI ++N+YCA+LPSD FT+L P+   ++       ++  +IR+PINSPLK  +  H 
Sbjct: 748 LANAIQMINKYCAKLPSDTFTKLTPLWRCAKTTRKGHDLYQYTIRMPINSPLKEDILFHS 807

Query: 61  M 61
           +
Sbjct: 808 L 808


>gi|57236094|gb|AAW48724.1| dicer-1 [Aedes aegypti]
          Length = 2192

 Score =  656 bits (1693), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 333/553 (60%), Positives = 393/553 (71%), Gaps = 87/553 (15%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFL 800
            T  P +FSFD+QP+L NH GPSP                  +RLETIGDSFLKYAIT +L
Sbjct: 1632 TDNPDEFSFDYQPNLNNHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYL 1691

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYL 860
            YCTY NVHEGKLSHLRSKQVSN NL++LG++KV GESMIATKFEP DNWLPP Y+VPK L
Sbjct: 1692 YCTYENVHEGKLSHLRSKQVSNLNLYRLGRRKVLGESMIATKFEPHDNWLPPCYYVPKEL 1751

Query: 861  ETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMN---------VQS 911
            E ALI+A  PA  WN   LP++K+LS E++  ++K++ + L    D +         +Q 
Sbjct: 1752 EQALIDAKIPACHWNLADLPDIKQLSSEEICRLVKERALALGLLDDSDNEEGETMKEIQQ 1811

Query: 912  V-----------------VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
            +                 +PYNLVTQHSIPDKS+ADCVEALIGAYLIECGPRGALL M+W
Sbjct: 1812 LETRNDEFIKNAEYFACFIPYNLVTQHSIPDKSVADCVEALIGAYLIECGPRGALLLMAW 1871

Query: 955  LGLKVIP-------------PVTN----------------------------PESKHLSD 973
            LG++V+P             P ++                            P  +   +
Sbjct: 1872 LGIRVLPVYEVPYDENNPKVPGSSQRYEKDGIAMQSVYGYWVPPKSPLLMYAPNPQQTLE 1931

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
             LLDG+  FE+S+ Y    +SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHL
Sbjct: 1932 HLLDGYSAFEDSLGYHHS-RSYLLQAMTHASYCPNRLTDCYQRLEFLGDAVLDYLITRHL 1990

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            YED R HSPG LTDLRSALVNN IFASLAVR  FH +F+HLSPGL++VI RFV++Q +N 
Sbjct: 1991 YEDPRQHSPGALTDLRSALVNNTIFASLAVRHDFHKYFRHLSPGLNDVIDRFVRIQQDNG 2050

Query: 1094 FTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
              +++EYYL+ E ECDEAED+EVPKALGD+FESVAGAI+LDS MSLD VWKVY  +M  E
Sbjct: 2051 HIISEEYYLISEDECDEAEDVEVPKALGDVFESVAGAIFLDSNMSLDAVWKVYRSMMGPE 2110

Query: 1153 IERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            IE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTVEVFGKG+++GIGRNY IA
Sbjct: 2111 IEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGTFRGIGRNYRIA 2170

Query: 1213 KCTAAKCALKHLK 1225
            KCTAAKCAL+ LK
Sbjct: 2171 KCTAAKCALRQLK 2183



 Score =  576 bits (1485), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 290/589 (49%), Positives = 399/589 (67%), Gaps = 25/589 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI +VN+YCA+LPSD FT+L P+   ++   +   ++ C+IR+PINSPLK  + G  
Sbjct: 757  LSNAIQMVNKYCAKLPSDTFTKLTPLWRGAKTVRNGQELYQCTIRMPINSPLKEDIVGLP 816

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE----------NTEPVVPKT 110
            MPT++LA R+AA  ACRVL++  ELD+ L P+ KE    +E          N   +V + 
Sbjct: 817  MPTEILARRMAAYTACRVLHKAGELDDSLQPIGKESFRAFEADWEDFELESNDAQIVIEN 876

Query: 111  PEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIH 170
             E    P +TKRRQ+Y+KR+AS F+ CRP++ +  YLY + M L CPIP+EQN RGRKI+
Sbjct: 877  SE--PRPGTTKRRQYYYKRIASAFSECRPTIGSKVYLYHINMTLQCPIPEEQNTRGRKIY 934

Query: 171  PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYL 230
            PPE+SPQG  ILTTK IPKV +FPIFTR GEV+V++ L D+  +L++E L    +F++Y 
Sbjct: 935  PPEDSPQGFGILTTKLIPKVSAFPIFTRSGEVKVALNLCDERPILNQEQLERIHMFINYT 994

Query: 231  FTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE 290
            FTKVL+L+KYLML+DP+  EN +FIVPT++    + +DW F+  I+++ + +   IP++ 
Sbjct: 995  FTKVLRLQKYLMLYDPDAMENCFFIVPTITRESVVTVDWNFIDTIAKNVDKMPTFIPDEN 1054

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
            R+N+ FD ++F+DAVVMPWYRNQ +P YFYVAEI  ++ P+S FP     Y TFEEYY  
Sbjct: 1055 RKNYTFDSNQFKDAVVMPWYRNQDQPQYFYVAEICYHLSPKSSFPGL--NYSTFEEYYYK 1112

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
            KY +QIQN +QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+L+
Sbjct: 1113 KYSIQIQNCKQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILI 1172

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWPP 469
            PELC IHPFPASLWR +V LP ILYR+NALLLADEIR  VA ++GLG   I DE  EWP 
Sbjct: 1173 PELCTIHPFPASLWRAAVCLPCILYRINALLLADEIRKEVAHDLGLGTTDIADESFEWPI 1232

Query: 470  FNFGWKMKKLKEKYGWDTKDANDVI-VDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
             NFGW +  + +K      +A   + +  +E N  +  +  + E  ++ +     +KKE 
Sbjct: 1233 LNFGWSLADVLKKSREAKLNAQSAVEMPPSETNKIEVLEEEITEKESDKSAAIEEEKKE- 1291

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVE 577
                  E E E++   D ++  + K +++G     +IGTWSNEMA   E
Sbjct: 1292 ----NGEIEKEEKTANDLLEEADKKLKAEG----FQIGTWSNEMAETFE 1332


>gi|195331135|ref|XP_002032258.1| GM23619 [Drosophila sechellia]
 gi|194121201|gb|EDW43244.1| GM23619 [Drosophila sechellia]
          Length = 2249

 Score =  640 bits (1650), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 332/559 (59%), Positives = 394/559 (70%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1687 MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1741

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1802 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1861

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +  VQ+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1862 GLEQNGGVQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1921

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1922 GALLFMAWLGVRVLPITRQLDAGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1981

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1982 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 2041

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 2042 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 2101

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN  ++  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 2102 IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 2161

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 2162 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 2221

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 2222 RNYRIAKCTAAKCALRQLK 2240



 Score =  550 bits (1418), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/607 (46%), Positives = 397/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 822  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 881

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 882  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 941

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 942  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1001

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 1002 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1061

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV S +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1062 NVLRLQKFLMLFDPDSTENCVFIVPTVKSPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1121

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1122 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1179

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1180 YGLTIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1239

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1240 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1299

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K              +++  ++ +DD+   +   E+ K  I   +ET  
Sbjct: 1300 DFGWSLSEVLKK------------SRESKQKESLKDDTINGQDLVEVEKKPI--NEETQL 1345

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1346 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1394

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1395 EDDDEDD 1401


>gi|425626948|gb|AFX89032.1| dicer 1 [Mayetiola destructor]
          Length = 2057

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 333/565 (58%), Positives = 395/565 (69%), Gaps = 94/565 (16%)

Query: 755  IIRNTSTPSDF------SFDFQPDLENHTGPSP------------------KRLETIGDS 790
            I +N+S   DF      SFD QPDL +++GPSP                  +RLETIGDS
Sbjct: 1482 ICKNSSAHDDFIDQQTFSFDKQPDLNDYSGPSPSIILQALTMSNANDGINLERLETIGDS 1541

Query: 791  FLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWL 850
            FLKYAIT +LYCTY NVHEGKLSHLRS+QVSN NL++LG++K+ GE MIATKFEP DNWL
Sbjct: 1542 FLKYAITTYLYCTYENVHEGKLSHLRSRQVSNLNLYRLGRRKMLGERMIATKFEPHDNWL 1601

Query: 851  PPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD--------LD 902
            PP Y+VPK LE ALIEA  PA  W    L ++KEL+ +++ E++K++  D        L+
Sbjct: 1602 PPCYYVPKDLEKALIEAKIPACYWEDARLLDVKELTVDEICEMLKKRIYDYEQDEKDALE 1661

Query: 903  CTVDMNVQSV-------------------VPYNLVTQHSIPDKSIADCVEALIGAYLIEC 943
               D   +S                    +PYNLVTQHSIPDKSIADCVEALIGA LIE 
Sbjct: 1662 YGNDAKNESTEYEEIINGPVINRDEFPCFIPYNLVTQHSIPDKSIADCVEALIGANLIEG 1721

Query: 944  GPRGALLFMSWLGLKV---------------IPPVTNPESK------------------- 969
            GPRGALLFM+WLG++V               IP  T P  +                   
Sbjct: 1722 GPRGALLFMAWLGIRVLPSKEIPFNENSLENIPGSTKPFERDGKKYQIVYGYWASPKSPL 1781

Query: 970  -HLS-------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
             H S       +  L+G+  FEE I Y F D+SYLLQAMTHASY  N LTDCYQRLEFLG
Sbjct: 1782 LHFSANPYETLERFLNGYSVFEEHIGYHFNDRSYLLQAMTHASYSQNRLTDCYQRLEFLG 1841

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            DA+LDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F+HLSP L++V
Sbjct: 1842 DAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPSLNDV 1901

Query: 1082 IQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            I RFV++Q EN+ ++++E+YL+ E ECDEAED+EVPKALGD+FESVAGAI+LDS MSLD 
Sbjct: 1902 IDRFVRIQVENNHSISEEFYLISEEECDEAEDVEVPKALGDIFESVAGAIFLDSNMSLDM 1961

Query: 1141 VWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG 1200
            VWK++  +MK EI++ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VFGKG
Sbjct: 1962 VWKIFSNMMKPEIDQFSDSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFGKG 2021

Query: 1201 SYKGIGRNYCIAKCTAAKCALKHLK 1225
            +Y+GIGRNY IAKCTAAKCAL+ LK
Sbjct: 2022 TYRGIGRNYRIAKCTAAKCALRQLK 2046



 Score =  451 bits (1160), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 254/589 (43%), Positives = 338/589 (57%), Gaps = 88/589 (14%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI +VN+YCA+LPSD FT+L PI    + K  D   +  ++RLPINSP+K+ + G  
Sbjct: 665  LTNAILLVNKYCAKLPSDTFTKLTPIWRCIKTKRGDRTYYQYTVRLPINSPVKQDIYGIP 724

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE--------NTEPVVPKTPE 112
            MP+++LA R A +  C+VL+   ELD++L P+ KE     E          E        
Sbjct: 725  MPSRVLARRFAGLICCKVLHLSGELDDNLQPIGKEGFRASEPDWNNFELEKEDADIVNEN 784

Query: 113  IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
            ++  P +T+RRQ+Y+KR+AS F+NCRP V   C LY +KM L CPIP+EQN RGRKI+ P
Sbjct: 785  LDPRPGTTRRRQYYYKRIASVFSNCRPKVGVGCKLYFIKMVLECPIPEEQNTRGRKIYAP 844

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ SF IFTR GEV VS+EL                        
Sbjct: 845  EDAVQGFGILTTKSIPKLGSFSIFTRSGEVRVSLEL------------------------ 880

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
                           CSEN                 W F+ LI+   + + Q+IP+  R+
Sbjct: 881  ---------------CSEN-----------------WSFLELIAHKSDHMPQEIPDAIRK 908

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
               F   KFRDAVVMPWYRNQ +P YFYVAEI   + P S FP  +  Y TF+EYY  KY
Sbjct: 909  EQKFSREKFRDAVVMPWYRNQDQPQYFYVAEICDYLSPESSFPGES--YATFKEYYFRKY 966

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             + IQN +QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET++  RE+L +KQ+LVPE
Sbjct: 967  NITIQNCQQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKKAKRENLEQKQILVPE 1026

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWPPFN 471
            LC IH FPASLWR +V LP + YR+NALLLADEIR  VA++I LGK  I D+  +WP  +
Sbjct: 1027 LCTIHSFPASLWRIAVCLPCVFYRINALLLADEIRIEVATDINLGKCKITDDTFDWPTLD 1086

Query: 472  FGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKE 527
            FGWK    +++ K+    +TK   +++  + +   +  D               I++++ 
Sbjct: 1087 FGWKLADVLRRAKDSKPKETKKLTELVQCEPDRQQSSND--------------TIIEQEL 1132

Query: 528  TVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV 576
               D  +E         DK  + E   E   +   +EIGTWSN MA  +
Sbjct: 1133 LEEDLLSENTKPKTNLKDKFPNVEKNLEDVCL---MEIGTWSNTMAENI 1178


>gi|195572986|ref|XP_002104476.1| Dicer-1 [Drosophila simulans]
 gi|194200403|gb|EDX13979.1| Dicer-1 [Drosophila simulans]
          Length = 1533

 Score =  639 bits (1647), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 331/559 (59%), Positives = 393/559 (70%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 971  MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1025

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1026 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1085

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1086 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1145

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1146 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1205

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1206 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1265

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1266 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1325

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 1326 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 1385

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN  ++  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 1386 IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 1445

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 1446 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 1505

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 1506 RNYRIAKCTAAKCALRQLK 1524



 Score =  555 bits (1430), Expect = e-155,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 400/607 (65%), Gaps = 37/607 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 106 LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 165

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
           MPT+ LA R+AA++AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 166 MPTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 225

Query: 117 ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
               P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 226 DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 285

Query: 173 ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
           E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 286 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 345

Query: 233 KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
            VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 346 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 405

Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
           +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 406 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 463

Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
           YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 464 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 523

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
           ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 524 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 583

Query: 471 NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
           +FGW + ++ +K              +++  ++ +DD+   +   E+AK  I   +ET  
Sbjct: 584 DFGWSLSEVLKK------------SRESKQKESLKDDTINGKDLVEVAKKPI--SEETQL 629

Query: 531 DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
           D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 630 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 678

Query: 591 DEDSNDD 597
           ++D  DD
Sbjct: 679 EDDDEDD 685


>gi|195502701|ref|XP_002098342.1| GE24009 [Drosophila yakuba]
 gi|194184443|gb|EDW98054.1| GE24009 [Drosophila yakuba]
          Length = 2250

 Score =  638 bits (1645), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 333/559 (59%), Positives = 391/559 (69%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P  P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1688 MEIQPPMPKKAISSAIL-----PTGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1742

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1743 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1802

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1803 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKAEAL 1862

Query: 902  DCTVDMNV---------------QSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +  V                  +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1863 GLEQNGGVPNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1922

Query: 947  GALLFMSWLGLKVIPPVT-----------------NPESK---------------HLS-- 972
            GALLFM+WLG++V+P                    NPE+                H +  
Sbjct: 1923 GALLFMAWLGVRVLPITRQLDEASQEHRIPGSTKPNPENMVTVYGAWPTPRSPLLHFAPN 1982

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GFD+FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1983 ATEELDQLLSGFDEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 2042

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 2043 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 2102

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN  ++  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 2103 IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 2162

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 2163 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 2222

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 2223 RNYRIAKCTAAKCALRQLK 2241



 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 280/583 (48%), Positives = 387/583 (66%), Gaps = 28/583 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   +  +     ++  ++RLPINSPLK  + G  
Sbjct: 821  LGTAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLYQYTLRLPINSPLKHDIVGLP 880

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 881  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 940

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 941  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1000

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 1001 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1060

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1061 NVLRLQKFLMLFDPDSTENCVFIVPTVKTPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1120

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1121 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1178

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1179 YGLTIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1238

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1239 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1298

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K              +++  D+ +DD+   +   E+ K  I   +ET  
Sbjct: 1299 DFGWSLSEVLKK------------SRESKQKDSSKDDTINGKDLVEVEKEAI--SEETQL 1344

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA
Sbjct: 1345 DKDSKADKVEKSAIELIIEGEEKL--QKADDFIEIGTWSNDMA 1385


>gi|15150411|gb|AAK84929.1| SD01621p [Drosophila melanogaster]
          Length = 865

 Score =  637 bits (1642), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 331/559 (59%), Positives = 391/559 (69%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 303  IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 357

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 358  ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 417

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 418  KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 477

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 478  GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 537

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 538  GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 597

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 598  ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 657

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 658  LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 717

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN   +  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 718  IQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 777

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 778  NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 837

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 838  RNYRIAKCTAAKCALRQLK 856


>gi|189234048|ref|XP_968993.2| PREDICTED: Dicer-1 [Tribolium castaneum]
          Length = 1865

 Score =  636 bits (1641), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/496 (64%), Positives = 385/496 (77%), Gaps = 42/496 (8%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            F FD QP+L  H GPSP                  +RLETIGDSFLKYAIT +LY  Y N
Sbjct: 1366 FKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYEN 1425

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LG++K  GE MIATKF+P DNWLPP ++VPK LE ALI+
Sbjct: 1426 VHEGKLSHLRSKQVSNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALID 1485

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A FPA+ W    +   ++++ + +  +++Q+   L      ++ +++PYNLVTQHSIPDK
Sbjct: 1486 AQFPANCWTVADMAATRDMTLDDICSMVRQRGESL------SLSNIIPYNLVTQHSIPDK 1539

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN-----------PESKHLS--- 972
            SIADCVEALIGAYLIECGPRGALLFM+WLG++V+P + +           P S HL+   
Sbjct: 1540 SIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPQLEDGTYGEIELPKSPLSNHLTYPR 1599

Query: 973  ---DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               D+LLDG+D+FE  I Y+F+D+SYLLQA+THAS+  NTLTDCYQRLEFLGDA+LDYLI
Sbjct: 1600 EELDMLLDGYDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLI 1659

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            TRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F++LSP L+EV+++FV++Q
Sbjct: 1660 TRHLYEDTRMHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQ 1719

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
             ++  TL  E YL+    +E ED+EVPKALGD+FESVAGAI+LDSGMSLD VWKVYY +M
Sbjct: 1720 EDSGHTLVDELYLVVET-EEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMM 1778

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            KSEIE+ S  VPKSPIRELLELEPE A+F KPEKLADGRRVRVTVEVFGKG +KGIGRNY
Sbjct: 1779 KSEIEQFSNKVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNY 1838

Query: 1210 CIAKCTAAKCALKHLK 1225
             IAKCTAAKCALK+LK
Sbjct: 1839 RIAKCTAAKCALKNLK 1854



 Score =  525 bits (1352), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/480 (53%), Positives = 340/480 (70%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI +VNRYCA+LPSD FTRL PI    +++      + CSIRLPINSP+K++VT   
Sbjct: 586  LSNAIALVNRYCAKLPSDTFTRLTPIWHEEKVENG----YICSIRLPINSPVKKTVTSPP 641

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE---NTEPVVPKTPE-IETY 116
            M   LLA R AA   C++L++  ELD++L P+ KE   + E   N+  +     E ++  
Sbjct: 642  MINTLLARRAAAFMICQLLHKAGELDDNLQPIGKENFKVNEEDWNSSALEESDEENLDPR 701

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+Y+K++A    +C P +  P Y Y + MKLTCP+P+EQN RGRKI+PPE+SP
Sbjct: 702  PGTTKRRQYYYKKVADALLDCHPIIGQPTYFYKIVMKLTCPLPEEQNTRGRKIYPPEDSP 761

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            QG  ILT+K IPK+ +FPIFTR GEV V ++L  + ++++E  +     F++Y FT VL+
Sbjct: 762  QGFGILTSKEIPKISAFPIFTRSGEVSVDLQLCSQ-LIVTENQICKIREFLNYTFTSVLR 820

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+KYL LF+P+ S NSY IVPT+ D     +DW F+ LI  +   + + IPE+ R+++ F
Sbjct: 821  LQKYLTLFNPDASANSYLIVPTI-DGATTTVDWDFIDLIYANLTVLPEIIPEEVRKSYEF 879

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
            D  K+RDAVVMPWYRNQ +P YFYVAEI +N++P S FP   + Y TFEEYY  KY +QI
Sbjct: 880  DPEKYRDAVVMPWYRNQDQPQYFYVAEICSNLNPASDFPG--SDYATFEEYYLRKYSIQI 937

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
            QN  Q LLDVDHTS RLNFLTPRYVNRKG+ L T+SE T+R  RE L +KQ+LVPELC I
Sbjct: 938  QNKSQHLLDVDHTSARLNFLTPRYVNRKGVALPTSSEATKRAKREKLEQKQILVPELCAI 997

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPF ASLWRK+V LP ILYR+NALLLAD+IR  VA E+ LGK+ LD + +WPP NFGW +
Sbjct: 998  HPFSASLWRKAVCLPCILYRINALLLADQIRRTVALELNLGKIELDSEFKWPPLNFGWSL 1057


>gi|17738129|ref|NP_524453.1| Dicer-1 [Drosophila melanogaster]
 gi|51316117|sp|Q9VCU9.1|DCR1_DROME RecName: Full=Endoribonuclease Dcr-1; Short=Protein dicer-1
 gi|7300916|gb|AAF56056.1| Dicer-1 [Drosophila melanogaster]
          Length = 2249

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 331/559 (59%), Positives = 391/559 (69%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1687 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1741

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1802 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1861

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1862 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1921

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1922 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1981

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1982 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 2041

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 2042 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 2101

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN   +  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 2102 IQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 2161

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 2162 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 2221

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 2222 RNYRIAKCTAAKCALRQLK 2240



 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 294/616 (47%), Positives = 391/616 (63%), Gaps = 55/616 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 822  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 881

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 882  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 941

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 942  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1001

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 1002 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1061

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1062 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1121

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1122 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1179

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1180 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1239

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1240 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1299

Query: 471  NFGWKM---------KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVE 521
            +FGW +          K KE    DT +  D+   D E   T E+        T++ K  
Sbjct: 1300 DFGWSLSEVLKKSRESKQKESLKDDTINGKDLA--DVEKKPTSEE--------TQLDKDS 1349

Query: 522  IVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPY 581
              DK E    S  E   E EEKL            Q  + ++EIGTWSN+MA  +     
Sbjct: 1350 KDDKVEK---SAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS--- 1391

Query: 582  PMTPPMFSDDEDSNDD 597
                  F+ ++D  DD
Sbjct: 1392 ------FNQEDDDEDD 1401


>gi|270015102|gb|EFA11550.1| dicer-1 [Tribolium castaneum]
          Length = 1835

 Score =  636 bits (1640), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 320/496 (64%), Positives = 385/496 (77%), Gaps = 42/496 (8%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            F FD QP+L  H GPSP                  +RLETIGDSFLKYAIT +LY  Y N
Sbjct: 1336 FKFDEQPNLVEHPGPSPNVLLQALTMSNANDGINLERLETIGDSFLKYAITNYLYSKYEN 1395

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LG++K  GE MIATKF+P DNWLPP ++VPK LE ALI+
Sbjct: 1396 VHEGKLSHLRSKQVSNLNLYRLGRRKGLGEYMIATKFDPHDNWLPPCFYVPKELEEALID 1455

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A FPA+ W    +   ++++ + +  +++Q+   L      ++ +++PYNLVTQHSIPDK
Sbjct: 1456 AQFPANCWTVADMAATRDMTLDDICSMVRQRGESL------SLSNIIPYNLVTQHSIPDK 1509

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN-----------PESKHLS--- 972
            SIADCVEALIGAYLIECGPRGALLFM+WLG++V+P + +           P S HL+   
Sbjct: 1510 SIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPQLEDGTYGEIELPKSPLSNHLTYPR 1569

Query: 973  ---DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               D+LLDG+D+FE  I Y+F+D+SYLLQA+THAS+  NTLTDCYQRLEFLGDA+LDYLI
Sbjct: 1570 EELDMLLDGYDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLI 1629

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            TRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH +F++LSP L+EV+++FV++Q
Sbjct: 1630 TRHLYEDTRMHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRNLSPSLNEVVEKFVRLQ 1689

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
             ++  TL  E YL+    +E ED+EVPKALGD+FESVAGAI+LDSGMSLD VWKVYY +M
Sbjct: 1690 EDSGHTLVDELYLVVET-EEVEDVEVPKALGDVFESVAGAIFLDSGMSLDAVWKVYYNMM 1748

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            KSEIE+ S  VPKSPIRELLELEPE A+F KPEKLADGRRVRVTVEVFGKG +KGIGRNY
Sbjct: 1749 KSEIEQFSNKVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVEVFGKGVFKGIGRNY 1808

Query: 1210 CIAKCTAAKCALKHLK 1225
             IAKCTAAKCALK+LK
Sbjct: 1809 RIAKCTAAKCALKNLK 1824



 Score =  525 bits (1351), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 259/480 (53%), Positives = 340/480 (70%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI +VNRYCA+LPSD FTRL PI    +++      + CSIRLPINSP+K++VT   
Sbjct: 586  LSNAIALVNRYCAKLPSDTFTRLTPIWHEEKVENG----YICSIRLPINSPVKKTVTSPP 641

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE---NTEPVVPKTPE-IETY 116
            M   LLA R AA   C++L++  ELD++L P+ KE   + E   N+  +     E ++  
Sbjct: 642  MINTLLARRAAAFMICQLLHKAGELDDNLQPIGKENFKVNEEDWNSSALEESDEENLDPR 701

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+Y+K++A    +C P +  P Y Y + MKLTCP+P+EQN RGRKI+PPE+SP
Sbjct: 702  PGTTKRRQYYYKKVADALLDCHPIIGQPTYFYKIVMKLTCPLPEEQNTRGRKIYPPEDSP 761

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            QG  ILT+K IPK+ +FPIFTR GEV V ++L  + ++++E  +     F++Y FT VL+
Sbjct: 762  QGFGILTSKEIPKISAFPIFTRSGEVSVDLQLCSQ-LIVTENQICKIREFLNYTFTSVLR 820

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+KYL LF+P+ S NSY IVPT+ D     +DW F+ LI  +   + + IPE+ R+++ F
Sbjct: 821  LQKYLTLFNPDASANSYLIVPTI-DGATTTVDWDFIDLIYANLTVLPEIIPEEVRKSYEF 879

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
            D  K+RDAVVMPWYRNQ +P YFYVAEI +N++P S FP   + Y TFEEYY  KY +QI
Sbjct: 880  DPEKYRDAVVMPWYRNQDQPQYFYVAEICSNLNPASDFPG--SDYATFEEYYLRKYSIQI 937

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
            QN  Q LLDVDHTS RLNFLTPRYVNRKG+ L T+SE T+R  RE L +KQ+LVPELC I
Sbjct: 938  QNKSQHLLDVDHTSARLNFLTPRYVNRKGVALPTSSEATKRAKREKLEQKQILVPELCAI 997

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPF ASLWRK+V LP ILYR+NALLLAD+IR  VA E+ LGK+ LD + +WPP NFGW +
Sbjct: 998  HPFSASLWRKAVCLPCILYRINALLLADQIRRTVALELNLGKIELDSEFKWPPLNFGWSL 1057


>gi|194910778|ref|XP_001982226.1| GG12488 [Drosophila erecta]
 gi|190656864|gb|EDV54096.1| GG12488 [Drosophila erecta]
          Length = 2249

 Score =  634 bits (1635), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 330/559 (59%), Positives = 390/559 (69%), Gaps = 78/559 (13%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1687 MEIEPPTAKKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1741

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1742 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1801

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1802 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKAEAL 1861

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1862 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1921

Query: 947  GALLFMSWLGLKVIP-------------------------------------PVTN--PE 967
            GALLFM+WLG++V+P                                     P+ +  P 
Sbjct: 1922 GALLFMAWLGVRVLPITRQLEGANQEHRIPGSTKPNVEKMVTVYGAWPTPRSPLLHFAPN 1981

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            +    D LL GF+ FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1982 ATEELDHLLSGFEVFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 2041

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV+
Sbjct: 2042 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVR 2101

Query: 1088 MQAENDFTL-NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN  ++  + Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY 
Sbjct: 2102 IQQENGHSISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYS 2161

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M  EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIG
Sbjct: 2162 NMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIG 2221

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL+ LK
Sbjct: 2222 RNYRIAKCTAAKCALRQLK 2240



 Score =  548 bits (1411), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/583 (48%), Positives = 386/583 (66%), Gaps = 28/583 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   +  +     MF  ++RLPINSPLK  + G  
Sbjct: 820  LGTAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTMFQYTLRLPINSPLKHDIVGLP 879

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 880  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 939

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 940  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 999

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 1000 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1059

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1060 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1119

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1120 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1177

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1178 YGLTIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1237

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1238 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1297

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K              +++  ++ + D+   +   E+ K  I   KET  
Sbjct: 1298 DFGWSLSEVLKK------------SRESKQKESLKGDTINGKDLVEVEKEPI--SKETQL 1343

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA
Sbjct: 1344 DKDSKADKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMA 1384


>gi|125773725|ref|XP_001358121.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
 gi|54637856|gb|EAL27258.1| GA18437 [Drosophila pseudoobscura pseudoobscura]
          Length = 2280

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 328/542 (60%), Positives = 384/542 (70%), Gaps = 78/542 (14%)

Query: 762  PSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCT 803
            P+ FSFD QP+L  H GPSP                  +RLETIGDSFLKYAIT +LY T
Sbjct: 1730 PAGFSFDLQPELVGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYIT 1789

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETA 863
            Y NVHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK LE A
Sbjct: 1790 YENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKA 1849

Query: 864  LIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC------------------VDLDCTV 905
            LIEA  P   W    L ++K LS  ++ E++++K                   V LD + 
Sbjct: 1850 LIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKAEALGLPGSAEQATPQATTVPLDESN 1909

Query: 906  DM--NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-- 961
            D   +    +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V+P  
Sbjct: 1910 DSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYS 1969

Query: 962  -------------PVTNPESKHLSDV------------------------LLDGFDKFEE 984
                           T P++K +  V                        LL GF++FE 
Sbjct: 1970 RQPAPASDSERTPGSTTPDAKQMVTVYGSWPTPRSPLLHYAPNAERELEHLLSGFEEFEA 2029

Query: 985  SINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGT 1044
            S+ YRF+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG 
Sbjct: 2030 SLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGA 2089

Query: 1045 LTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLM 1103
            LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV++Q EN  ++  + Y L 
Sbjct: 2090 LTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLS 2149

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
            E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY  +M  EIE+ S SVPKS
Sbjct: 2150 EEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKS 2209

Query: 1164 PIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKH 1223
            PIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCAL+ 
Sbjct: 2210 PIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQ 2269

Query: 1224 LK 1225
            LK
Sbjct: 2270 LK 2271



 Score =  541 bits (1394), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/586 (48%), Positives = 388/586 (66%), Gaps = 35/586 (5%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   ++ +     ++  ++RLPINSPLK  + G  
Sbjct: 837  LSTAIALVNKYCARLPSDTFTKLTALWRCAQSERSGVTLYQYTLRLPINSPLKHDIVGLP 896

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            M T+ LA R+AA++AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 897  MTTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 956

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +K+ L CPIP+EQN RGRKI+PP
Sbjct: 957  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIKLTLQCPIPEEQNTRGRKIYPP 1016

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILT K IPK+ +F IFTR GEV+VS+EL  + VVL+ E +    +F++Y FT
Sbjct: 1017 EDAQQGFGILTMKRIPKLSAFSIFTRSGEVKVSLELAKERVVLTPEQIGCINVFLNYTFT 1076

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVSDSE----QIVIDWKFMTLISEHHNDVIQDIPE 288
             VL+L+K+LMLFDP+ +EN  FIVPT+           IDW+F+ LI  + N + + +P+
Sbjct: 1077 NVLRLQKFLMLFDPDSTENCVFIVPTLKTGSPPEGSKKIDWQFLELIQANGNTMPKSVPD 1136

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
            +ER    FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY
Sbjct: 1137 EERLAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYY 1194

Query: 349  SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
             +KYGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+
Sbjct: 1195 FVKYGLTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI 1254

Query: 409  LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEW 467
            LVPELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE+ EW
Sbjct: 1255 LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIDDEEFEW 1314

Query: 468  PPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKE 527
            P  +FGW + ++ +K   ++K   D +V+  E    KE +S    + +E   VE +  K 
Sbjct: 1315 PMLDFGWSLSEVLKK-SRESKQ-KDAVVNGKE--QAKEKESEPPPVESEPPLVEKLAAK- 1369

Query: 528  TVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
                S NE   E E+KL +++ D+          ++EIGTWSN+MA
Sbjct: 1370 ----SANELIIEGEQKL-QVEDDD----------FIEIGTWSNDMA 1400


>gi|195143531|ref|XP_002012751.1| GL23778 [Drosophila persimilis]
 gi|194101694|gb|EDW23737.1| GL23778 [Drosophila persimilis]
          Length = 2278

 Score =  632 bits (1631), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 328/542 (60%), Positives = 384/542 (70%), Gaps = 78/542 (14%)

Query: 762  PSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCT 803
            P+ FSFD QP+L  H GPSP                  +RLETIGDSFLKYAIT +LY T
Sbjct: 1728 PAGFSFDLQPELVGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKYAITTYLYIT 1787

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETA 863
            Y NVHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK LE A
Sbjct: 1788 YENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKA 1847

Query: 864  LIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC------------------VDLDCTV 905
            LIEA  P   W    L ++K LS  ++ E++++K                   V LD + 
Sbjct: 1848 LIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKAEALGLPGSAEQATPQATTVPLDESN 1907

Query: 906  DM--NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-- 961
            D   +    +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V+P  
Sbjct: 1908 DSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYS 1967

Query: 962  -------------PVTNPESKHLSDV------------------------LLDGFDKFEE 984
                           T P++K +  V                        LL GF++FE 
Sbjct: 1968 RQPAPASDSERTPGSTTPDAKQMVTVYGSWPTPRSPLLHYAPNAERELEHLLSGFEEFEA 2027

Query: 985  SINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGT 1044
            S+ YRF+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG 
Sbjct: 2028 SLGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGA 2087

Query: 1045 LTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLM 1103
            LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV++Q EN  ++  + Y L 
Sbjct: 2088 LTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLS 2147

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
            E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY  +M  EIE+ S SVPKS
Sbjct: 2148 EEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEIEQFSNSVPKS 2207

Query: 1164 PIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKH 1223
            PIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCAL+ 
Sbjct: 2208 PIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQ 2267

Query: 1224 LK 1225
            LK
Sbjct: 2268 LK 2269



 Score =  541 bits (1393), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 284/586 (48%), Positives = 382/586 (65%), Gaps = 35/586 (5%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   ++ +     ++  ++RLPINSPLK  + G  
Sbjct: 835  LSTAIALVNKYCARLPSDTFTKLTALWRCAQSERSGVTLYQYTLRLPINSPLKHDIVGLP 894

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            M T+ LA R+AA++AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 895  MTTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 954

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +K+ L CPIP+EQN RGRKI+PP
Sbjct: 955  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIKLTLQCPIPEEQNTRGRKIYPP 1014

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILT K IPK+ +F IFTR GEV+VS+EL  + VVL+ E +    +F++Y FT
Sbjct: 1015 EDAQQGFGILTMKRIPKLSAFSIFTRSGEVKVSLELAKERVVLTPEQIGCINVFLNYTFT 1074

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVSDSE----QIVIDWKFMTLISEHHNDVIQDIPE 288
             VL+L+K+LMLFDP+ +EN  FIVPT+           IDW+F+ LI  + N + + +P+
Sbjct: 1075 NVLRLQKFLMLFDPDSTENCVFIVPTLKTGSPPEGSKKIDWQFLELIQANGNTMPKSVPD 1134

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
            +ER    FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY
Sbjct: 1135 EERLAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYY 1192

Query: 349  SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
             +KYGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+
Sbjct: 1193 FVKYGLTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI 1252

Query: 409  LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEW 467
            LVPELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE+ EW
Sbjct: 1253 LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIDDEEFEW 1312

Query: 468  PPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKE 527
            P  +FGW + ++ +K     +   D +V+  E    KE +S    + +E   VE +  K 
Sbjct: 1313 PMLDFGWSLSEVLKKSRESKQ--KDAVVNGKE--QAKEKESEPPPVESEPPLVEKLAAK- 1367

Query: 528  TVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
                S NE   E E+KL     D           ++EIGTWSN+MA
Sbjct: 1368 ----SANELIIEGEQKLQDEDDD-----------FIEIGTWSNDMA 1398


>gi|195443910|ref|XP_002069632.1| GK11626 [Drosophila willistoni]
 gi|194165717|gb|EDW80618.1| GK11626 [Drosophila willistoni]
          Length = 2281

 Score =  632 bits (1630), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 328/541 (60%), Positives = 380/541 (70%), Gaps = 80/541 (14%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD QPDL  H GPSP                  +RLETIGDSFLKYAIT +LY TY N
Sbjct: 1732 FSFDRQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYEN 1791

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK LE ALIE
Sbjct: 1792 VHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIE 1851

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDM----------------NVQ 910
            A  P   W    L ++K LS  ++ E++++K   L   +D                 +  
Sbjct: 1852 AKIPTHHWKLADLLDIKNLSSVQICELVREKAEALGLGIDQRAPNGHQLDDSNESCNDFS 1911

Query: 911  SVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV----------- 959
              +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V           
Sbjct: 1912 CFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPYTKQTANTL 1971

Query: 960  ----------IPPVTNPESKHLSDV------------------------LLDGFDKFEES 985
                      IP  T P+SK+ + V                        LL GF++FE  
Sbjct: 1972 PEIESNEQQRIPGSTKPDSKNTTVVYGKWPTPRSPLLPFAPNASDELEHLLSGFEEFEAI 2031

Query: 986  INYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
            + YRF+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG L
Sbjct: 2032 LGYRFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGAL 2091

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLME 1104
            TDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV++Q EN   +  + Y L E
Sbjct: 2092 TDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSE 2151

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSP 1164
             ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW VY  +MK EIE+ S SVPKSP
Sbjct: 2152 EECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMKPEIEQFSNSVPKSP 2211

Query: 1165 IRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            IRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCAL+ L
Sbjct: 2212 IRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQL 2271

Query: 1225 K 1225
            K
Sbjct: 2272 K 2272



 Score =  550 bits (1416), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 286/590 (48%), Positives = 389/590 (65%), Gaps = 32/590 (5%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   +  + +   ++  +IRLPINSPLK  + G  
Sbjct: 832  LGTAIALVNKYCARLPSDTFTKLTALWRCASTERNGITLYQYTIRLPINSPLKHDIVGLP 891

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++ C  L+++ ELD++L P+ KE     E+        PE E      
Sbjct: 892  MPTQTLARRLAALQTCVELHKIGELDDELQPIGKEGFRALESDWECFDLEPEDEHIVQLT 951

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F NCRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 952  DEPRPGTTKRRQYYYKRVASEFCNCRPVAGQPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1011

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILT K IPK+ +F IFTR GEV+VS+EL  + VVL+EE +S    F++Y FT
Sbjct: 1012 EDAQQGFGILTLKRIPKLSAFSIFTRSGEVKVSLELAKERVVLTEEQISCVNAFLNYTFT 1071

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV----SDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
             VL+L+K+LMLFDP+ +EN  FIVPT+    ++     IDWKF+  I  + + + Q +P+
Sbjct: 1072 NVLRLQKFLMLFDPDSTENCVFIVPTIRGSGAEGTSRHIDWKFLEQIQANGSMMPQAVPD 1131

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
            ++R    FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF  YY
Sbjct: 1132 EQRLAQAFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFRHYY 1189

Query: 349  SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
             +KYGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+
Sbjct: 1190 LVKYGLTIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQI 1249

Query: 409  LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEW 467
            LVPELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE+ EW
Sbjct: 1250 LVPELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIDDEQFEW 1309

Query: 468  PPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKE 527
            P  +FGW + ++ +K     + A DV+ + T    T ++ S   E   E  +    D K+
Sbjct: 1310 PMLDFGWSLSEVLKKSRESKQKAKDVVEETT----TGQNGSDPVEEEQEKQEKTPPDSKK 1365

Query: 528  TVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVE 577
             +  S NE   E E++L            Q  + ++EIGTWSN+MA  +E
Sbjct: 1366 -LEKSANELIIEGEQQL------------QEADDFIEIGTWSNDMAEDIE 1402


>gi|195037032|ref|XP_001989969.1| GH18503 [Drosophila grimshawi]
 gi|193894165|gb|EDV93031.1| GH18503 [Drosophila grimshawi]
          Length = 2254

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 321/547 (58%), Positives = 388/547 (70%), Gaps = 80/547 (14%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFL 800
            +++ SDF+FD+QP+L  H GPSP                  +RLETIGDSFLKYAIT +L
Sbjct: 1699 SASISDFNFDYQPELVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYL 1758

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYL 860
            Y TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK L
Sbjct: 1759 YMTYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKEL 1818

Query: 861  ETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSV-------- 912
            E ALIEA  P   W    L ++K L+  ++ E++++K V L         ++        
Sbjct: 1819 EKALIEAKIPTHHWKLADLLDIKNLNSVQICELVREKAVALGLAAGTEQPAIAQQMTPNA 1878

Query: 913  --------------VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                          +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++
Sbjct: 1879 NLDDSNETNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVR 1938

Query: 959  VIP---------------PVTNPESKHLSDV------------------------LLDGF 979
            V+P                 + P +K++  +                        LL GF
Sbjct: 1939 VLPYKLVPTAADDERRAPGTSKPNAKNMVTIYGAWPTPRSPLLHFAPNATVELEHLLSGF 1998

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            ++FE S+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R 
Sbjct: 1999 EEFEASLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQ 2058

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQ 1098
            HSPG LTDLRSALVNN IFASLAVR GFH +F+HLSPGL++VI RFV++Q EN  ++  +
Sbjct: 2059 HSPGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHSISEE 2118

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             Y L E ECD+AED+EVPKALGD+FES+AGAI+LDS +SLD VW+VY  +MK EIE+ S 
Sbjct: 2119 YYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSDLSLDVVWRVYSNMMKPEIEQFSN 2178

Query: 1159 SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAK 1218
            SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAK
Sbjct: 2179 SVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAK 2238

Query: 1219 CALKHLK 1225
            CAL+ LK
Sbjct: 2239 CALRQLK 2245



 Score =  538 bits (1385), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 280/583 (48%), Positives = 379/583 (65%), Gaps = 38/583 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   +  +     ++  ++RLPINSPLK  + G  
Sbjct: 826  LSTAIALVNKYCARLPSDTFTKLTALWRCASSERQGIKLYQYTLRLPINSPLKYDIVGLP 885

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA +AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 886  MPTQTLARRLAAFQACVELHKIGELDDQLQPIGKEGFRALEPDWECFDLEPEDEQIVQQN 945

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP  + PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 946  DEPRPGTTKRRQYYYKRIASEFCDCRPVPDVPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1005

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E + QG  ILT K IPK+ +F IFTR GEV+VS+EL  + VVL+   +    +F++Y FT
Sbjct: 1006 EEAQQGFGILTLKRIPKLSAFSIFTRSGEVKVSLELARERVVLTSAQIDCINVFLNYTFT 1065

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV ++ +  +IDWKF+ LI    N + Q +P++ER
Sbjct: 1066 NVLRLQKFLMLFDPDSTENCVFIVPTVRAERDNRLIDWKFLELIQATGNMMPQPVPDEER 1125

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   F+  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1126 QEQAFEAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1183

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            Y L IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1184 YNLTIQNTAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1243

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V+S++ LG+  I DE+ EWP  
Sbjct: 1244 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSSDLALGRQQIDDEQFEWPML 1303

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K             +  +   +KE    V+    E  K   ++K E   
Sbjct: 1304 DFGWSLSEVLKKSR-----------ESKQKQCSKEAVGKVDADPEEATKETPIEKTEK-- 1350

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
             S NE   E EE+L+              + ++EIGTWSN+MA
Sbjct: 1351 -SANELVIEGEEQLN------------SADDFIEIGTWSNDMA 1380



 Score = 43.1 bits (100), Expect = 1.0,   Method: Compositional matrix adjust.
 Identities = 38/120 (31%), Positives = 54/120 (45%), Gaps = 8/120 (6%)

Query: 948  ALLFMSWLGLKVIPPVTNPESKHLSDVLLD-GFDKFEESINYRFKDKSYLLQA--MTHAS 1004
            +L F   +     P VT  E    S  + D  FD   E + +     S +LQA  M++A+
Sbjct: 1675 SLQFQEAVAKHTAPAVTETEKASPSASISDFNFDYQPELVGHPGPSPSIILQALTMSNAN 1734

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
              +N      +RLE +GD+ L Y IT +LY        G L+ LRS  V N+    L  R
Sbjct: 1735 DGIN-----LERLETIGDSFLKYAITTYLYMTYENVHEGKLSHLRSKQVANLNLYRLGRR 1789


>gi|194744012|ref|XP_001954492.1| GF18290 [Drosophila ananassae]
 gi|190627529|gb|EDV43053.1| GF18290 [Drosophila ananassae]
          Length = 2252

 Score =  631 bits (1627), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 326/539 (60%), Positives = 383/539 (71%), Gaps = 72/539 (13%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFL 800
            ++ P  FSFD QP L  H GPSP                  +RLETIGDSFLKYAIT +L
Sbjct: 1705 STLPKGFSFDRQPGLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYL 1764

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYL 860
            Y TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK L
Sbjct: 1765 YITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKEL 1824

Query: 861  ETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC------------VDLDCTVDM- 907
            E ALIEA  P   W    L ++K LS  ++ E++++K               LD + D  
Sbjct: 1825 EKALIEAKIPTHHWKLADLLDIKNLSSVQICELVREKAEALGLEQNGPQSGQLDDSNDSC 1884

Query: 908  -NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP----P 962
             +    +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V+P    P
Sbjct: 1885 NDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPFTRQP 1944

Query: 963  VTNPESKHLS-----------------------------------DVLLDGFDKFEESIN 987
                E+K +                                    D LL GF++FE S+ 
Sbjct: 1945 AEQEEAKRVPGSSKSDAEGMVTVYGAWPTPRSPLLHFAPNATGELDQLLSGFEEFEASLG 2004

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LTD
Sbjct: 2005 YKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALTD 2064

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLMEGE 1106
            LRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV++Q EN  ++  + Y L E E
Sbjct: 2065 LRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHSISEEYYLLSEEE 2124

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
            CD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW+VY  +M  EIE+ S SVPKSPIR
Sbjct: 2125 CDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMSPEIEQFSNSVPKSPIR 2184

Query: 1167 ELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCAL+ LK
Sbjct: 2185 ELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2243



 Score =  551 bits (1419), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/583 (48%), Positives = 384/583 (65%), Gaps = 28/583 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI ++N+YCARLPSD FT+L  +   +  +     ++  ++RLPINSPLK  + G  
Sbjct: 823  LGSAIALINKYCARLPSDTFTKLTALWRCTRSERAGKTLYQYTLRLPINSPLKHDIVGLP 882

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 883  MPTQTLARRLAALQACAELHRIGELDDQLQPIGKEGFRALEADWECFDLEPEDEQILQMS 942

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 943  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1002

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + VVL+ E +     F++Y FT
Sbjct: 1003 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKEQVVLTSEQIGCINGFLNYTFT 1062

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVS-DSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV   +   +IDWKF+ +I  + N + +++P++ER
Sbjct: 1063 NVLRLQKFLMLFDPDSTENCVFIVPTVKMPAGGKMIDWKFLDVIQANGNTLPREVPDEER 1122

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
                FD   F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP     Y+TF+ YY  K
Sbjct: 1123 LAKPFDAQCFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--EQYRTFKHYYYAK 1180

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1181 YGLNIQNSSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1240

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG-KVILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG + I DE+ +WP  
Sbjct: 1241 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSTDLGLGQQQIEDEEFQWPML 1300

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K   ++K  +  +  D EVN TKE      +   +  KVE     +   
Sbjct: 1301 DFGWSLSEVLKK-SRESKQRD--VGKDVEVN-TKEPKGGQGDATKKDIKVEAQSNDDKKE 1356

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
             S NE   E E+KL            Q  + ++EIGTWSN+MA
Sbjct: 1357 KSANELIIEGEQKL------------QEADDFIEIGTWSNDMA 1387


>gi|148829108|gb|ABR14013.1| Dicer-1 [Penaeus monodon]
          Length = 2473

 Score =  629 bits (1622), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 331/576 (57%), Positives = 393/576 (68%), Gaps = 74/576 (12%)

Query: 708  DNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF 767
            DNA   + N      I+  +N+  T      D + +  S    CE            FSF
Sbjct: 1904 DNAQQSTSN------IIRTVNRDETLALTRPDSEVQCSSWYSICEE---------MSFSF 1948

Query: 768  DFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHE 809
            DFQPDL NH GPSP                  +RLETIGDSFLKYAIT FLYCTYP  HE
Sbjct: 1949 DFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHE 2008

Query: 810  GKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF 869
            GKLS+LRSKQVSN NL++LGK+K  GE M+ATKFEP DNWLPPGYFVP+ LE ALI++G 
Sbjct: 2009 GKLSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGV 2068

Query: 870  PASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQS-------------VVPYN 916
            PA  WN   LP L +L+ +++  +++++   +  +      S              +PYN
Sbjct: 2069 PAGHWNMADLPGLHDLASDEIRRLVQERSEQIKRSKSEQATSELMATQNPHDLPIFIPYN 2128

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV--TNPESKHLS-- 972
            L+TQHSIPDKSIADCVEALIGAYL  CGPRGALLFMSWLG+KV+P    ++PE+  L   
Sbjct: 2129 LLTQHSIPDKSIADCVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEASELITY 2188

Query: 973  ----------------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
                                  D+LL G+  FEE I Y F+D+SYLLQA THASY+ N L
Sbjct: 2189 GHLESPQSPLYHCPLTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQAFTHASYYKNRL 2248

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            TDCYQRLEFLGDA+LDYLITRHLYED+R HSPG LTDLRSALVNN IFASLAV+  +H +
Sbjct: 2249 TDCYQRLEFLGDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYHKY 2308

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGA 1129
            F+H SPGL  VI+ FVKMQ EN   +N+EYY M E EC+ AEDIEVPKALGD+FESVAGA
Sbjct: 2309 FRHFSPGLDRVIRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGA 2368

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR 1189
            I+LDSG SLD VW VYY +M  EIE+ S  VPKSPIRELLE+EPE A+F KPE+L DG +
Sbjct: 2369 IFLDSGSSLDAVWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPERLVDG-K 2427

Query: 1190 VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            VRV+VE+FGKGS+ G+GRNY IAK TAAK AL+HLK
Sbjct: 2428 VRVSVEIFGKGSFSGVGRNYRIAKSTAAKRALRHLK 2463



 Score =  469 bits (1207), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 267/608 (43%), Positives = 368/608 (60%), Gaps = 43/608 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM--FTCSIRLPINSPLKRSVTG 58
            M +AI ++N+YCA+LPSD FTRL  +  + EI+E +  +  + C I LPINSPLK ++ G
Sbjct: 1108 MASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIEEAEVEIPKYKCKIMLPINSPLKGTIEG 1167

Query: 59   HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYEN--TEPVVPKTPEIETY 116
                   LA   AA+E CR L++++ELD+ L PV KE + L ++    P   + PE    
Sbjct: 1168 PWQSKVSLAKMAAALECCRRLHQMEELDDQLQPVGKESMKLDDHLCAPPADDQVPEGMPR 1227

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+ +K++A C T  +P      ++Y + M LTCPIPDEQN RGRKI+ PE S 
Sbjct: 1228 PGTTKRRQYCYKKVAVCLTGEQPKQGLDLFVYKLDMVLTCPIPDEQNTRGRKIYRPEQSS 1287

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +   I+TTK I +V  FP+FTR GEV V ++ I++ V ++++ LS    F  + FT VL+
Sbjct: 1288 RSFGIITTKPISQVSGFPVFTRSGEVVVHVQEIERKVNVTQDQLSALQYFHKFTFTHVLR 1347

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+KY + FDP  +  +++IVP    +     DW+F+  I    +       +  R+ F F
Sbjct: 1348 LEKYPIKFDPTNARTAFYIVPLNKFNGSEGTDWEFVKEIQSEGDPRPVPPQDDARKKFQF 1407

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                + DAVVMPWYRNQ +P YFYVAEI T+++P+S FP     ++TFE+YY  KYGLQI
Sbjct: 1408 QHDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDFPDAG--FETFEKYYLTKYGLQI 1465

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             NL QPLLDVDHTS RLN LTPR+VNRKG+ L TTSEET+R  RE+L +KQ+LVPELC I
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQILVPELCTI 1525

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPFPASLWRK+V LP+ILYR+NALLLAD++R +VASE+GLG   L     WPP +FGW +
Sbjct: 1526 HPFPASLWRKAVCLPTILYRINALLLADQLRLSVASEVGLGLQTLLPDFSWPPLDFGWSL 1585

Query: 477  KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQ 536
                           DV+  + E N  ++D S +    T  +K +    + + C+S    
Sbjct: 1586 A--------------DVLRKNQE-NQEQDDKSNIASEATN-SKQKATKTENSECES---- 1625

Query: 537  ENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSND 596
                        + + K   +G +  +EIGTWSN+MA        P TPP   D  +  D
Sbjct: 1626 ---------PTLAAKKKAPKKGND--MEIGTWSNDMAVD------PPTPPFDMDTMNGPD 1668

Query: 597  DLSSVDFD 604
            +     FD
Sbjct: 1669 EFEIDTFD 1676


>gi|283827860|gb|ADB44075.1| dicer-1 [Marsupenaeus japonicus]
          Length = 2482

 Score =  628 bits (1619), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 330/578 (57%), Positives = 395/578 (68%), Gaps = 71/578 (12%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            S     N  ++T+I+   +  +N+  T      D + +  S    CE            F
Sbjct: 1908 SSKGCDNAQQSTSIM---IRTVNRDETLALKRPDSEVQCSSWNSICEE---------MSF 1955

Query: 766  SFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNV 807
            SFDFQPDL NH GPSP                  +RLETIGDSFLKYAIT FLYCTYP  
Sbjct: 1956 SFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQR 2015

Query: 808  HEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
            HEGKLS+LRSKQVSN NL++LGK+K  GE M+ATKFEP DNWLPPGYFVP+ LE ALI++
Sbjct: 2016 HEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDS 2075

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQS-------------VVP 914
            G PA  WN   LP L +L+ +++  +++++   +  + +    S              +P
Sbjct: 2076 GVPAGHWNMADLPGLHDLASDEIRRLVQERSEQIKRSKNEQATSELMATQNPHDLPIFIP 2135

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV--TNPESKHLS 972
            YNL+TQHSIPDKSIADCVEALIGAYL  CGPRGALLFMSWLG+KV+P     +PE+  L 
Sbjct: 2136 YNLLTQHSIPDKSIADCVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLEDSPETGQLI 2195

Query: 973  ------------------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                                    D+LL G+  FEE I Y F+D+SYLLQA THASY+ N
Sbjct: 2196 IYGHLESPQSPLYHCPLTDTKKELDLLLSGYQVFEEKIGYTFQDRSYLLQAFTHASYYKN 2255

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             LTDCYQRLEFLGDA+LDYLITRHLYED+R HSPG LTDLRSALVNN IFASLAV+  +H
Sbjct: 2256 RLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYH 2315

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVA 1127
             +F+H SPGL  VI+ FVKMQ EN   +N+EYY M E EC+ AEDIEVPKALGD+FESVA
Sbjct: 2316 KYFRHFSPGLDRVIRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVA 2375

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG SLD VW VYY +M  EIE+ S  VPKSPIRELLE+EPE A+F KPE+L DG
Sbjct: 2376 GAIFLDSGSSLDAVWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPERLVDG 2435

Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
             +VRV+VE+FGKGS+ G+GRNY IAK TAAK AL+HLK
Sbjct: 2436 -KVRVSVEIFGKGSFSGVGRNYRIAKSTAAKRALRHLK 2472



 Score =  473 bits (1217), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 265/607 (43%), Positives = 363/607 (59%), Gaps = 47/607 (7%)

Query: 5    IFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            I ++N+YCA+LPSD FTRL  +  + E++E   ++ + C I LPINSPLK ++ G     
Sbjct: 1122 IGLLNKYCAKLPSDTFTRLTAMWDVEEMEETAGALKYKCKIMLPINSPLKGTIEGPWQDK 1181

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYEN--TEPVVPKTPEIETYPDSTK 121
              LA   AA+E CR L+++ ELD+ L PV KE + L ++    P   + PE    P +TK
Sbjct: 1182 VSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVPEGMPRPGTTK 1241

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAI 181
            RRQ+Y+K++A C T  +P      ++Y + M LTCPIPDEQN RGRKI+ PE S +   I
Sbjct: 1242 RRQYYYKKVAVCLTGEQPKQGLDLFVYKLDMVLTCPIPDEQNTRGRKIYRPEQSSRSFGI 1301

Query: 182  LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
            +TTK I +V  FP+FTR GEV V ++ I++ V ++++ LS    F  + FT VL+L+KY 
Sbjct: 1302 ITTKPISQVSGFPVFTRSGEVVVHVQEIERKVNVTQDQLSALQYFHKFTFTHVLRLEKYP 1361

Query: 242  MLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKF 301
            + FDP  +  +++IVP    +    IDW+F+  I    +       +  R+ F F    +
Sbjct: 1362 IKFDPTNARTAFYIVPLNKFNGSESIDWEFVKEIQSEGDPRPVPPQDDARKKFQFQHDLY 1421

Query: 302  RDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQ 361
             DAVVMPWYRNQ +P YFYVAEI T+++P+S FP     ++TFE+YY  KYGLQI NL Q
Sbjct: 1422 EDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDFPDAG--FETFEKYYLTKYGLQICNLAQ 1479

Query: 362  PLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPA 421
            PLLDVDHTS RLN LTPR+VNRKG+ L TTSEET+R  RE+L +KQ+LVPELC IHPFPA
Sbjct: 1480 PLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQILVPELCTIHPFPA 1539

Query: 422  SLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKE 481
            SLWRK+V LP+ILYR+NALLLAD++R +VASE+GLG   L     WPP +FGW +     
Sbjct: 1540 SLWRKAVCLPTILYRINALLLADQLRLSVASEVGLGLQNLLPDFSWPPLDFGWSLA---- 1595

Query: 482  KYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGN-EQENED 540
                      DV+  + E  + ++DD + N         E  + K+    + N E E+  
Sbjct: 1596 ----------DVLKKNQE--NQEQDDKSNN-------SSEATNNKQKATKAENPECESPT 1636

Query: 541  EEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDDLSS 600
                 K     N          +EIGTWSN+MA         + PP    D D+ +    
Sbjct: 1637 LTAKKKAPKKTND---------MEIGTWSNDMA---------VDPPTPPFDMDTMNGPDE 1678

Query: 601  VDFDVED 607
             + D  D
Sbjct: 1679 FEIDTFD 1685


>gi|195109134|ref|XP_001999145.1| GI24348 [Drosophila mojavensis]
 gi|193915739|gb|EDW14606.1| GI24348 [Drosophila mojavensis]
          Length = 2256

 Score =  627 bits (1618), Expect = e-177,   Method: Compositional matrix adjust.
 Identities = 324/540 (60%), Positives = 383/540 (70%), Gaps = 77/540 (14%)

Query: 763  SDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTY 804
            + FSFD QP+L  H GPSP                  +RLETIGDSFLKYAIT +LY TY
Sbjct: 1708 AGFSFDQQPELVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITY 1767

Query: 805  PNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETAL 864
             NVHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK LE AL
Sbjct: 1768 ENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKAL 1827

Query: 865  IEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC------------------VDLDCTVD 906
            IEA  P   W    L ++K LS  ++ E++++K                    DLD + +
Sbjct: 1828 IEAKIPTHHWKLADLLDIKNLSSVQICELVREKAEALGLGANVDQPIATQQHADLDDSNE 1887

Query: 907  MN-VQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP---- 961
             N     +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V+P    
Sbjct: 1888 TNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGIRVLPYQLE 1947

Query: 962  -----------PVTNPESKHLSDV------------------------LLDGFDKFEESI 986
                         T P++ ++  V                        LL GF++FE S+
Sbjct: 1948 PAAADIEQRKPGSTKPDANNMVTVYGDWPTPRSPLLHFAPNAHRELEELLSGFEEFEASL 2007

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             Y F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HSPG LT
Sbjct: 2008 GYTFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHSPGALT 2067

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLMEG 1105
            DLRSALVNN IFASLAVR GFH +F+HLSPGL++VI RFV++Q EN   +  + Y L E 
Sbjct: 2068 DLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHCISEEYYLLSEE 2127

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
            ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW+V+  +MK EIE+ S SVPKSPI
Sbjct: 2128 ECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVFSNMMKPEIEQFSNSVPKSPI 2187

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            RELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCAL+ LK
Sbjct: 2188 RELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCALRQLK 2247



 Score =  561 bits (1445), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 290/585 (49%), Positives = 390/585 (66%), Gaps = 41/585 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   + +  D   ++  ++RLPINSPLK  + G  
Sbjct: 827  LSTAIALVNKYCARLPSDTFTKLTALWRCASVVRDGVTLYQYTLRLPINSPLKHDIIGLP 886

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 887  MPTQTLARRLAALQACVELHKIGELDDQLQPIGKEGFRALEPDWECFDLEPEDEQIVQQN 946

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 947  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1006

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E + QG  ILT K IPK+ +F IFTR GEV+VS+EL    VVL+EE +S   +F++Y FT
Sbjct: 1007 EEAQQGFGILTLKRIPKLSAFSIFTRSGEVKVSLELARDRVVLTEEQISCINVFLNYTFT 1066

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPT+ S ++  +IDW+F+ LI    N + Q +P++ER
Sbjct: 1067 NVLRLQKFLMLFDPDSTENCVFIVPTIRSTADSRIIDWQFLELIQATGNMMPQPVPDEER 1126

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1127 QKQSFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DHYRTFKHYYLVK 1184

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1185 YGLTIQNAAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1244

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE+ EWP  
Sbjct: 1245 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIDDEEFEWPML 1304

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDK--KET 528
            +FGW + ++ +K             +  + +D+KE   A+NE   E+A VE V +   + 
Sbjct: 1305 DFGWSLSEVLKKSR-----------ESKQKSDSKE---AINETVEELA-VETVAEPNMDK 1349

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
            V  + NE   E EE+L               E ++EIGTWSN+MA
Sbjct: 1350 VEKTANELVIEGEEQLS------------STEEFIEIGTWSNDMA 1382


>gi|195391256|ref|XP_002054279.1| GJ24359 [Drosophila virilis]
 gi|194152365|gb|EDW67799.1| GJ24359 [Drosophila virilis]
          Length = 2250

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 326/545 (59%), Positives = 380/545 (69%), Gaps = 88/545 (16%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD QPDL  H GPSP                  +RLETIGDSFLKYAIT +LY TY N
Sbjct: 1701 FSFDHQPDLVGHPGPSPSIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYEN 1760

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQV+N NL++LG++K  GE MIATKFEP DNWLPP Y+VPK LE ALIE
Sbjct: 1761 VHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIATKFEPHDNWLPPCYYVPKELEKALIE 1820

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKC---------------------VDLDCTV 905
            A  P   W  + L ++K LS  ++ E++++K                       +LD + 
Sbjct: 1821 AKIPTQHWKLVDLLDIKNLSSVQICEMVREKAESLGLVGSVEQPAAAQQLTHNANLDDSN 1880

Query: 906  DMN-VQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP--- 961
            + N     +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPRGALLFM+WLG++V+P   
Sbjct: 1881 ETNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLGVRVLPYKL 1940

Query: 962  ----------------------------------------PVTNPESKHLSDVLLDGFDK 981
                                                    P  N E +HL    L GF++
Sbjct: 1941 EPTAAAIEQRMPGSTKPDLNNMITVYGDWPTPRSPLLHFAPNANAELEHL----LSGFEE 1996

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
            FE S+ Y F D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDYLITRHLYED R HS
Sbjct: 1997 FESSLGYTFSDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYEDPRQHS 2056

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEY 1100
            PG LTDLRSALVNN IFASLAVR GFH +F+HLSPGL++VI RFV++Q EN   +  + Y
Sbjct: 2057 PGALTDLRSALVNNTIFASLAVRHGFHKYFRHLSPGLNDVIDRFVRIQQENGHIISEEYY 2116

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
             L E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW+VY  +MK EIE+ S SV
Sbjct: 2117 LLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWQVYSNMMKPEIEQFSNSV 2176

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
            PKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++GIGRNY IAKCTAAKCA
Sbjct: 2177 PKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIAKCTAAKCA 2236

Query: 1221 LKHLK 1225
            L+ LK
Sbjct: 2237 LRQLK 2241



 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 289/588 (49%), Positives = 381/588 (64%), Gaps = 47/588 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +  AI +VN+YCARLPSD FT+L  +   +       ++F  ++RLPINSPLK  + G  
Sbjct: 818  LSTAIALVNKYCARLPSDTFTKLTALWRCARSVRQGVVLFQYTLRLPINSPLKHDIVGLP 877

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA +AC  L+++ ELD+ L P+ KE     E         PE E      
Sbjct: 878  MPTQTLARRLAAFQACVELHKIGELDDQLQPIGKEGFRALEPDWECFELEPEDEHIVQQN 937

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 938  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 997

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E + QG  ILT K IPK+ +F IFTR GEV+VS+EL  + VVL++E +S   +F++Y FT
Sbjct: 998  EEARQGFGILTLKRIPKLSAFSIFTRSGEVKVSLELARERVVLTQEQISCINVFLNYTFT 1057

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV ++ +  +IDW+F+ LI    N + Q +P+ ER
Sbjct: 1058 NVLRLQKFLMLFDPDSTENCVFIVPTVKTEQDSRIIDWQFLELIQATGNLMPQPVPDGER 1117

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1118 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1175

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1176 YGLTIQNTAQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1235

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE+ EWP  
Sbjct: 1236 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIDDEQFEWPML 1295

Query: 471  NFGWK----MKKLKE-KYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDK 525
            +FGW     +KK +E K   DT DA    +DD       E                I++K
Sbjct: 1296 DFGWSLSEVLKKSRESKQKPDTTDAIKQAIDDPAQQTVDE---------------PIIEK 1340

Query: 526  KETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
                  S NE   E EE+L               + ++EIGTWSN+MA
Sbjct: 1341 ---ATKSANELVIEGEEQLS------------NTDDFIEIGTWSNDMA 1373


>gi|195424855|gb|ACF96960.1| dicer-1 [Litopenaeus vannamei]
          Length = 2473

 Score =  627 bits (1617), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 331/578 (57%), Positives = 394/578 (68%), Gaps = 71/578 (12%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            S     N  ++T+I   I+  +N+  T      D + +  S    CE            F
Sbjct: 1899 SSKGCDNAQQSTSI---IIRTVNRDETLALKRPDSEVQCSSWNSICEE---------MSF 1946

Query: 766  SFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNV 807
            SFDFQPDL NH GPSP                  +RLETIGDSFLKYAIT FLYCTYP  
Sbjct: 1947 SFDFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQR 2006

Query: 808  HEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
            HEGKLS+LRSKQVSN NL++LGK+K  GE M+ATKFEP DNWLPPGYFVP+ LE ALI++
Sbjct: 2007 HEGKLSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDS 2066

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQS-------------VVP 914
            G PA  WN   LP L +L+ +++  +++++   +  +      S              +P
Sbjct: 2067 GVPAGHWNMADLPGLHDLASDEIRRLVQERSEQIKRSKSEQATSELMATQNPHDPPIFIP 2126

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV--TNPES---- 968
            YNL+TQHSIPDKSIADCVEALIGAYL  CGPRGALLFMSWLG+KV+P    ++PE+    
Sbjct: 2127 YNLLTQHSIPDKSIADCVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEACELI 2186

Query: 969  --KHLS------------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
               HL                   D+LL G+  FEE I Y F+D+SYLLQA THASY+ N
Sbjct: 2187 TYGHLESPQSPPYHCPLTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQASTHASYYKN 2246

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             LTDCYQRLEFLGDA+LDYLITRHLYED+R HSPG LTDLRSALVNN IFASLAV+  +H
Sbjct: 2247 RLTDCYQRLEFLGDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYH 2306

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVA 1127
             +F+H SPG   VI+ FVKMQ EN   +N+EYY M E E + AEDIEVPKALGD+FESVA
Sbjct: 2307 KYFRHFSPGPDRVIRDFVKMQEENGHKINEEYYFMEEDEREAAEDIEVPKALGDVFESVA 2366

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG SLD VW VYY +M  EIER S  VPKSPIRELLE+EPE A+F KPE+L DG
Sbjct: 2367 GAIFLDSGSSLDAVWSVYYTMMCPEIERFSGVVPKSPIRELLEMEPETAKFGKPERLVDG 2426

Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
             +VRV+VE+FGKGS+ G+GRNY IAK TAAK AL+HLK
Sbjct: 2427 -KVRVSVEIFGKGSFSGVGRNYRIAKSTAAKRALRHLK 2463



 Score =  488 bits (1256), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 270/609 (44%), Positives = 369/609 (60%), Gaps = 45/609 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSI--MFTCSIRLPINSPLKRSVTG 58
            M +AI ++N+YCA+LPSD FTRL  +  + EIKE +++  ++ C I LPINSPLK ++ G
Sbjct: 1108 MASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIKEAEALTPVYKCKIMLPINSPLKGTIEG 1167

Query: 59   HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYEN--TEPVVPKTPEIETY 116
                   LA   AA+E CR L+++ ELD+ L PV KE + L ++    P   + PE    
Sbjct: 1168 PWQKKVSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVPEGMPR 1227

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+Y+K++A C T  +P      ++Y + M LTCPIPDEQN RGRKI+ PE S 
Sbjct: 1228 PGTTKRRQYYYKKVAVCLTGEQPKQGLDLFVYKLDMVLTCPIPDEQNTRGRKIYRPEQSS 1287

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +   I+TTK I +V  FP+FTR GEV V ++ I++ V ++++ LS    F  + FT VL+
Sbjct: 1288 RSFGIITTKPISQVSGFPVFTRSGEVVVHVQEIERKVNVTQDQLSALQYFHKFTFTHVLR 1347

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+KY + FDP  +  +++IVP    +    IDW+F+  I    +       +  R+ F F
Sbjct: 1348 LEKYPIKFDPTNARTAFYIVPLNKFNGSEGIDWEFVKEIQSEGDPRPVPPQDDARKKFQF 1407

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                + DAVVMPWYRNQ +P YFYVAEI T+++P+S FP     ++TFE+YY  KYGLQI
Sbjct: 1408 QHDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDFPDA--GFETFEKYYLTKYGLQI 1465

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             NL QPLLDVDHTS RLN LTPR+VNRKG+ L TTSEET+R  RE+L +KQ+LVPELC I
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQILVPELCTI 1525

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPFPASLWRK+V LP+ILYR+NALLLAD++R +VASE+GLG   L     WPP +FGW +
Sbjct: 1526 HPFPASLWRKAVCLPTILYRINALLLADQLRLSVASEVGLGLQTLLPDFSWPPLDFGWGL 1585

Query: 477  KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDS-AVNEICTEIAKVEIVDKKETVCDSGNE 535
              +  K   + ++ +D     TE  ++K+  S A N  C    +   +  K+     GN+
Sbjct: 1586 ADVLRK-NQENQEQDDKSNIATEATNSKQKASKAENPEC----ESPTLAAKKKAPKKGND 1640

Query: 536  QENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSN 595
                                       +EIGTWSN+MA        P TPP   D  +  
Sbjct: 1641 ---------------------------MEIGTWSNDMAVD------PPTPPFDMDTMNGP 1667

Query: 596  DDLSSVDFD 604
            D+     FD
Sbjct: 1668 DEFEIDTFD 1676


>gi|289711908|gb|ACC62400.2| ribonuclease III [Penaeus monodon]
          Length = 2473

 Score =  622 bits (1605), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 330/576 (57%), Positives = 393/576 (68%), Gaps = 74/576 (12%)

Query: 708  DNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF 767
            DNA   + N      I+  +N+  T      D + +  S    CE            FSF
Sbjct: 1904 DNAQQSTSN------IIRTVNRDETLALTRPDSEVQCSSWYSICEE---------MSFSF 1948

Query: 768  DFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHE 809
            DFQPDL NH GPSP                  +RLETIGDSFLKYAIT FLYCTYP  HE
Sbjct: 1949 DFQPDLLNHPGPSPSVILQALTMSNANDGVNLERLETIGDSFLKYAITTFLYCTYPQRHE 2008

Query: 810  GKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF 869
            GKLS+LRSKQVSN NL++LGK+K  GE M+ATKFEP DNWLPPGYFVP+ LE ALI++G 
Sbjct: 2009 GKLSYLRSKQVSNLNLYRLGKRKGLGECMVATKFEPHDNWLPPGYFVPRELEEALIDSGV 2068

Query: 870  PASLWNCLSLPNLKELSPEKVLEIIKQKCVDL----------DCTVDMNVQSV---VPYN 916
            PA  WN   LP L +L+ +++  +++++   +          + T   N   +   +PYN
Sbjct: 2069 PAGHWNMADLPGLHDLASDEIRRLVQERSEQIKRSKSEQATSELTATQNPHDLPIFIPYN 2128

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV--TNPESKHLS-- 972
            L+TQHSIPDKSIAD VEALIGAYL  CGPRGALLFMSWLG+KV+P    ++PE+  L   
Sbjct: 2129 LLTQHSIPDKSIADYVEALIGAYLTTCGPRGALLFMSWLGIKVLPCTLESSPEASELITY 2188

Query: 973  ----------------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
                                  D+LL G+  FEE I Y F+D+SYLLQA THASY+ N L
Sbjct: 2189 GHLESPQSPLYHCPLTDTRKELDLLLSGYQVFEEKIGYTFRDRSYLLQAFTHASYYKNRL 2248

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            T CYQRLEFLGDA+LDYLITRHLYED+R HSPG LTDLRSALVNN IFASLAV+  +H +
Sbjct: 2249 TGCYQRLEFLGDAVLDYLITRHLYEDKRQHSPGALTDLRSALVNNTIFASLAVKYDYHKY 2308

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGA 1129
            F+H SPGL  VI+ FVKMQ EN   +N+EYY M E EC+ AEDIEVPKALGD+FESVAGA
Sbjct: 2309 FRHFSPGLDRVIRDFVKMQEENGHKINEEYYFMEEDECEAAEDIEVPKALGDVFESVAGA 2368

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR 1189
            I+LDSG SLD VW VYY +M  EIE+ S  VPKSPIRELLE+EPE A+F KPE+L DG +
Sbjct: 2369 IFLDSGSSLDAVWSVYYTMMCREIEQFSGVVPKSPIRELLEMEPETAKFGKPERLVDG-K 2427

Query: 1190 VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            VRV+VE+FGKGS+ G+GRNY IAK TAAK AL+HLK
Sbjct: 2428 VRVSVEIFGKGSFSGVGRNYRIAKSTAAKRALRHLK 2463



 Score =  474 bits (1220), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 269/608 (44%), Positives = 369/608 (60%), Gaps = 43/608 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM--FTCSIRLPINSPLKRSVTG 58
            M +AI ++N+YCA+LPSD FTRL  +  + EI+E +  +  + C I LPINSPLK ++ G
Sbjct: 1108 MASAIGLLNKYCAKLPSDTFTRLTAMWDVEEIEEAEVEIPKYKCKIMLPINSPLKGTIEG 1167

Query: 59   HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYEN--TEPVVPKTPEIETY 116
                   LA   AA+E CR L+++ ELD+ L PV KE + L ++    P   + PE    
Sbjct: 1168 PWQSKVSLAKMAAALECCRRLHQMGELDDQLQPVGKESMKLDDHLCAPPADDQVPEGMPR 1227

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+Y+K++A C T  +P      ++Y + M LTCPIPDEQN RGRKI+ PE S 
Sbjct: 1228 PGTTKRRQYYYKKVAVCLTGEQPKQGLDLFVYKLDMVLTCPIPDEQNTRGRKIYRPEQSS 1287

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +   I+TTK I +V  FP+FTR GEV V ++ I++ V ++++ LS    F  + FT VL+
Sbjct: 1288 RSFGIITTKPISQVSGFPVFTRSGEVVVHVQEIERKVNVTQDQLSALQYFHKFTFTHVLR 1347

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+KY + FDP  +  +++IVP    +    IDW+F+  I    +       +  R+ F F
Sbjct: 1348 LEKYPIKFDPTNARTAFYIVPLNKFNGSEGIDWEFVKEIQSEGDPRPVPPQDDARKKFQF 1407

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                + DAVVMPWYRNQ +P YFYVAEI T+++P+S FP     ++TFE+YY  KYGLQI
Sbjct: 1408 QHDLYEDAVVMPWYRNQDQPQYFYVAEICTHLNPQSDFPDA--GFETFEKYYLTKYGLQI 1465

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             NL QPLLDVDHTS RLN LTPR+VNRKG+ L TTSEET+R  RE+L +KQ+LVPELC I
Sbjct: 1466 CNLAQPLLDVDHTSGRLNLLTPRHVNRKGVALPTTSEETKRAKRENLQQKQILVPELCTI 1525

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPFPASLWRK+V LP+ILYR+NALLLAD++R +VASE+GLG   L     WPP +FGW +
Sbjct: 1526 HPFPASLWRKAVCLPTILYRINALLLADQLRLSVASEVGLGLQTLLPDFSWPPLDFGWSL 1585

Query: 477  KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQ 536
                           DV+  + E N  ++D S +    T  +K +    + + C+S    
Sbjct: 1586 A--------------DVLRKNQE-NQEQDDKSNIASEATN-SKQKATKTENSECES---- 1625

Query: 537  ENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSND 596
                        + + K   +G +  +EIGTWSN+MA        P TPP   D  +  D
Sbjct: 1626 ---------PTLAAKKKAPKKGND--MEIGTWSNDMAVD------PPTPPFDMDTMNGPD 1668

Query: 597  DLSSVDFD 604
            +     FD
Sbjct: 1669 EFEIDTFD 1676


>gi|58382645|ref|XP_312076.2| AGAP002836-PA [Anopheles gambiae str. PEST]
 gi|55241936|gb|EAA07793.2| AGAP002836-PA [Anopheles gambiae str. PEST]
          Length = 2256

 Score =  588 bits (1516), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/600 (53%), Positives = 372/600 (62%), Gaps = 141/600 (23%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD+QPDL  H GPSP                  +RLETIGDSFLKYAIT +LYC Y N
Sbjct: 1648 FSFDYQPDLSQHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDN 1707

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LG++K  G+ MIA KFEP DNWLPP Y+VPK LE  LI+
Sbjct: 1708 VHEGKLSHLRSKQVSNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELEQTLID 1767

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV-----DLDCTVDM-------------- 907
            A  PA  WN   LP++K LS  ++ +++K++       D+D   D+              
Sbjct: 1768 AKIPACHWNLADLPDIKRLSCAEICQLVKERARAKRREDVD-RFDLQHADSNGGEDGNED 1826

Query: 908  -----------------------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC- 943
                                   N    +PYNLVTQHSIPDKS+ADCVEALIGAYLIEC 
Sbjct: 1827 DDDDDDDDEDDTTTGEGNEHEADNGSCYIPYNLVTQHSIPDKSVADCVEALIGAYLIECG 1886

Query: 944  -------------------------------------------GPRGALLFMSWLGLKVI 960
                                                       GP    + ++  G  V 
Sbjct: 1887 PRGALLFMAWLGIRVLPIREPPVKLNSNNETALTPYKATGQNDGPLSTGVTIAEYGHWVA 1946

Query: 961  PPV---------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
            PP                    S+ L+  LL GF++FE+++ YRF+D+SYLLQAMTHASY
Sbjct: 1947 PPSPMVRANITFGGIETGAAATSRELAR-LLQGFEEFEQALGYRFRDRSYLLQAMTHASY 2005

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N LTDCYQRLEFLGDAILDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR 
Sbjct: 2006 SPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSPGALTDLRSALVNNTIFASLAVRH 2065

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD----------------- 1108
            GFH +F HLSPGL EVI RFV++Q EN   + +E Y +  E D                 
Sbjct: 2066 GFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYYLPDEDDELGEYGAMGEDGPGEGR 2125

Query: 1109 ---EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
               EAED+EVPKALGD+FES+AGAI+LDS MSLDTVWKVY ++M  EIE+ S SVPKSPI
Sbjct: 2126 GVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSVPKSPI 2185

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            RELLE+EPE A+F KPEKL DGRRVRVTVEVFGKG+++GIGRNY IAKCTAAKCAL+ LK
Sbjct: 2186 RELLEMEPETAKFGKPEKLTDGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2245



 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/605 (42%), Positives = 339/605 (56%), Gaps = 116/605 (19%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI  +N+YCA+LPSD FT+L PI   +        ++  +IRLPINSP K  +    
Sbjct: 780  LGNAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRLPINSPWKEDI---- 835

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
                L+A   +    CR                                       PD+ 
Sbjct: 836  ----LIA---SVFNECR---------------------------------------PDAE 849

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
                 YH RM                      +L CPIP+EQN RGRKI+ PE S QG  
Sbjct: 850  TVAYLYHIRM----------------------ELICPIPEEQNTRGRKIYAPEESAQGFG 887

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILTTK IPK+ SFPIFTR GEV+VS++L  + V LS   L     F+ Y FTKVL+L+K 
Sbjct: 888  ILTTKLIPKISSFPIFTRSGEVKVSLDLCPQRVKLSAHQLEMVNCFVKYTFTKVLRLQKS 947

Query: 241  LMLFDPNCSENSYFIVPTVS--------------DSEQIVIDWKFMTLISEH-HNDVIQD 285
            LML+D N +EN +FIVPTV                S+ +++DW+F+  I+ + H      
Sbjct: 948  LMLYDANATENCFFIVPTVKQAVAGAAGKDEPPLQSDDVMVDWEFVEKIATNVHRSGPTF 1007

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            IP++ R+ + FD  KFRDAVVMPWYRN+ +P YFYVAEI  ++ P+S FP   + Y TFE
Sbjct: 1008 IPDEARKGYTFDVGKFRDAVVMPWYRNRDQPQYFYVAEICNHLSPKSTFPG--SNYATFE 1065

Query: 346  EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK 405
            EYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +
Sbjct: 1066 EYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQ 1125

Query: 406  KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDE-- 463
            KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   +DE  
Sbjct: 1126 KQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWENVDELQ 1185

Query: 464  --KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEI 517
              + +WP  +FGW     ++K KE+     ++A D    + E ++ + D  A N      
Sbjct: 1186 EGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE-DEVELDKEAPN------ 1238

Query: 518  AKVEIVDKKETVCDSGNEQENEDEEKLDKIKSD------ENKTESQGVEPWVEIGTWSNE 571
                + D  E   + G + EN    +++K + D      + KT+S G    +EIGTWSNE
Sbjct: 1239 ----VRDAAEVDEEDGLKMENGVIAEVEKSQVDGEDDTGDKKTDSDGT--LLEIGTWSNE 1292

Query: 572  MAAGV 576
            MA GV
Sbjct: 1293 MAVGV 1297


>gi|347968645|ref|XP_003436256.1| AGAP002836-PB [Anopheles gambiae str. PEST]
 gi|333467908|gb|EGK96757.1| AGAP002836-PB [Anopheles gambiae str. PEST]
          Length = 2336

 Score =  588 bits (1515), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 318/600 (53%), Positives = 372/600 (62%), Gaps = 141/600 (23%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD+QPDL  H GPSP                  +RLETIGDSFLKYAIT +LYC Y N
Sbjct: 1728 FSFDYQPDLSQHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDN 1787

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LG++K  G+ MIA KFEP DNWLPP Y+VPK LE  LI+
Sbjct: 1788 VHEGKLSHLRSKQVSNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELEQTLID 1847

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV-----DLDCTVDM-------------- 907
            A  PA  WN   LP++K LS  ++ +++K++       D+D   D+              
Sbjct: 1848 AKIPACHWNLADLPDIKRLSCAEICQLVKERARAKRREDVD-RFDLQHADSNGGEDGNED 1906

Query: 908  -----------------------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC- 943
                                   N    +PYNLVTQHSIPDKS+ADCVEALIGAYLIEC 
Sbjct: 1907 DDDDDDDDEDDTTTGEGNEHEADNGSCYIPYNLVTQHSIPDKSVADCVEALIGAYLIECG 1966

Query: 944  -------------------------------------------GPRGALLFMSWLGLKVI 960
                                                       GP    + ++  G  V 
Sbjct: 1967 PRGALLFMAWLGIRVLPIREPPVKLNSNNETALTPYKATGQNDGPLSTGVTIAEYGHWVA 2026

Query: 961  PPV---------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
            PP                    S+ L+  LL GF++FE+++ YRF+D+SYLLQAMTHASY
Sbjct: 2027 PPSPMVRANITFGGIETGAAATSRELAR-LLQGFEEFEQALGYRFRDRSYLLQAMTHASY 2085

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N LTDCYQRLEFLGDAILDYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR 
Sbjct: 2086 SPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSPGALTDLRSALVNNTIFASLAVRH 2145

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD----------------- 1108
            GFH +F HLSPGL EVI RFV++Q EN   + +E Y +  E D                 
Sbjct: 2146 GFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYYLPDEDDELGEYGAMGEDGPGEGR 2205

Query: 1109 ---EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
               EAED+EVPKALGD+FES+AGAI+LDS MSLDTVWKVY ++M  EIE+ S SVPKSPI
Sbjct: 2206 GVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSVPKSPI 2265

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            RELLE+EPE A+F KPEKL DGRRVRVTVEVFGKG+++GIGRNY IAKCTAAKCAL+ LK
Sbjct: 2266 RELLEMEPETAKFGKPEKLTDGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALRQLK 2325



 Score =  533 bits (1372), Expect = e-148,   Method: Compositional matrix adjust.
 Identities = 291/613 (47%), Positives = 381/613 (62%), Gaps = 52/613 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI  +N+YCA+LPSD FT+L PI   +        ++  +IRLPINSP K  + G  
Sbjct: 780  LGNAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRLPINSPWKEDILGLP 839

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE------NTEPVVPK--TPE 112
            MPT+ LA R+AA   CR+L+   ELDN   P  KE    +E        E    K  +  
Sbjct: 840  MPTETLARRLAAYMTCRMLHAAGELDNSFQPFGKEAFRAFEADWENFELEESDAKILSEN 899

Query: 113  IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
             +  P +TKRRQ+Y+KR+AS F  CRP   T  YLY ++M+L CPIP+EQN RGRKI+ P
Sbjct: 900  SDPRPGTTKRRQYYYKRIASVFNECRPDAETVAYLYHIRMELICPIPEEQNTRGRKIYAP 959

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E S QG  ILTTK IPK+ SFPIFTR GEV+VS++L  + V LS   L     F+ Y FT
Sbjct: 960  EESAQGFGILTTKLIPKISSFPIFTRSGEVKVSLDLCPQRVKLSAHQLEMVNCFVKYTFT 1019

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVS--------------DSEQIVIDWKFMTLISEH 278
            KVL+L+K LML+D N +EN +FIVPTV                S+ +++DW+F+  I+ +
Sbjct: 1020 KVLRLQKSLMLYDANATENCFFIVPTVKQAVAGAAGKDEPPLQSDDVMVDWEFVEKIATN 1079

Query: 279  -HNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSR 337
             H      IP++ R+ + FD  KFRDAVVMPWYRN+ +P YFYVAEI  ++ P+S FP  
Sbjct: 1080 VHRSGPTFIPDEARKGYTFDVGKFRDAVVMPWYRNRDQPQYFYVAEICNHLSPKSTFPG- 1138

Query: 338  TNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
             + Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R
Sbjct: 1139 -SNYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKR 1197

Query: 398  EIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
              RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG
Sbjct: 1198 AKRENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLG 1257

Query: 458  KVILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSA 509
               +DE    + +WP  +FGW     ++K KE+     ++A D    + E ++ + D  A
Sbjct: 1258 WENVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE-DEVELDKEA 1316

Query: 510  VNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKSD------ENKTESQGVEPWV 563
             N          + D  E   + G + EN    +++K + D      + KT+S G    +
Sbjct: 1317 PN----------VRDAAEVDEEDGLKMENGVIAEVEKSQVDGEDDTGDKKTDSDGT--LL 1364

Query: 564  EIGTWSNEMAAGV 576
            EIGTWSNEMA GV
Sbjct: 1365 EIGTWSNEMAVGV 1377


>gi|29424049|gb|AAO73809.1| dicer-1 [Anopheles gambiae]
          Length = 2259

 Score =  587 bits (1513), Expect = e-164,   Method: Compositional matrix adjust.
 Identities = 318/603 (52%), Positives = 372/603 (61%), Gaps = 144/603 (23%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD+QPDL  H GPSP                  +RLETIGDSFLKYAIT +LYC Y N
Sbjct: 1648 FSFDYQPDLSQHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLYCRYDN 1707

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LG++K  G+ MIA KFEP DNWLPP Y+VPK LE  LI+
Sbjct: 1708 VHEGKLSHLRSKQVSNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELEQTLID 1767

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV-----DLDCTVDM-------------- 907
            A  PA  WN   LP++K LS  ++ +++K++       D+D   D+              
Sbjct: 1768 AKIPACHWNLADLPDIKRLSCAEICQLVKERARAKRREDVD-RFDLQHADSNGGEDGNED 1826

Query: 908  --------------------------NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLI 941
                                      N    +PYNLVTQHSIPDKS+ADCVEALIGAYLI
Sbjct: 1827 DDEDDEDDDDDDDDTTTGEGNEHEADNGSCYIPYNLVTQHSIPDKSVADCVEALIGAYLI 1886

Query: 942  EC--------------------------------------------GPRGALLFMSWLGL 957
            EC                                            GP    + ++  G 
Sbjct: 1887 ECGPRGALLFMAWLGIRVLPIREPPVKLNSNNETALTPYKATGQNDGPLSTGVTIAEYGH 1946

Query: 958  KVIPPV---------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTH 1002
             V PP                    S+ L+  LL GF++FE+++ YRF+D+SYLLQAMTH
Sbjct: 1947 WVAPPSPMVRANITFGGIETGAAATSRELAR-LLQGFEEFEQALGYRFRDRSYLLQAMTH 2005

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            ASY  N LTDCYQRLEFLGDAILDYLITRHLYED R HSPG LTDLRSALVNN IFASLA
Sbjct: 2006 ASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQHSPGALTDLRSALVNNTIFASLA 2065

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD-------------- 1108
            VR GFH +F HLSPGL EVI RFV++Q EN   + +E Y +  E D              
Sbjct: 2066 VRHGFHKYFLHLSPGLQEVIDRFVRIQQENGHRITEEEYYLPDEDDELGEYGAMGEDGPG 2125

Query: 1109 ------EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPK 1162
                  EAED+EVPKALGD+FES+AGAI+LDS MSLDTVWKVY ++M  EIE+ S SVPK
Sbjct: 2126 EGRGVGEAEDVEVPKALGDVFESIAGAIFLDSDMSLDTVWKVYRKMMGPEIEKFSSSVPK 2185

Query: 1163 SPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALK 1222
            SPIRELLE+EPE A+F KPEKL DGRRVRVTVEVFGKG+++GIGRNY IAKCTAAKCAL+
Sbjct: 2186 SPIRELLEMEPETAKFGKPEKLTDGRRVRVTVEVFGKGTFRGIGRNYRIAKCTAAKCALR 2245

Query: 1223 HLK 1225
             LK
Sbjct: 2246 QLK 2248



 Score =  437 bits (1125), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 259/605 (42%), Positives = 339/605 (56%), Gaps = 116/605 (19%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI  +N+YCA+LPSD FT+L PI   +        ++  +IRLPINSP K  +    
Sbjct: 780  LGNAIQTLNKYCAKLPSDTFTKLTPIWRCATTVRKGRKLYQYTIRLPINSPWKEDI---- 835

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
                L+A   +    CR                                       PD+ 
Sbjct: 836  ----LIA---SVFNECR---------------------------------------PDAE 849

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
                 YH RM                      +L CPIP+EQN RGRKI+ PE S QG  
Sbjct: 850  TVAYLYHIRM----------------------ELICPIPEEQNTRGRKIYAPEESAQGFG 887

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILTTK IPK+ SFPIFTR GEV+VS++L  + V LS   L     F+ Y FTKVL+L+K 
Sbjct: 888  ILTTKLIPKISSFPIFTRSGEVKVSLDLCPQRVKLSAHQLEMVNCFVKYTFTKVLRLQKS 947

Query: 241  LMLFDPNCSENSYFIVPTVS--------------DSEQIVIDWKFMTLISEH-HNDVIQD 285
            LML+D N +EN +FIVPTV                S+ +++DW+F+  I+ + H      
Sbjct: 948  LMLYDANATENCFFIVPTVKQAVAGAAGKDEPPLQSDDVMVDWEFVEKIATNVHRSGPTF 1007

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            IP++ R+ + FD  KFRDAVVMPWYRN+ +P YFYVAEI  ++ P+S FP   + Y TFE
Sbjct: 1008 IPDEARKGYTFDVGKFRDAVVMPWYRNRDQPQYFYVAEICNHLSPKSTFPG--SNYATFE 1065

Query: 346  EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK 405
            EYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +
Sbjct: 1066 EYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQ 1125

Query: 406  KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDE-- 463
            KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   +DE  
Sbjct: 1126 KQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWENVDELQ 1185

Query: 464  --KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEI 517
              + +WP  +FGW     ++K KE+     ++A D    + E ++ + D  A N      
Sbjct: 1186 EGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE-DEVELDKEAPN------ 1238

Query: 518  AKVEIVDKKETVCDSGNEQENEDEEKLDKIKSD------ENKTESQGVEPWVEIGTWSNE 571
                + D  E   + G + EN    +++K + D      + KT+S G    +EIGTWSNE
Sbjct: 1239 ----VRDAAEVDEEDGLKMENGVIAEVEKSQVDGEDDTGDKKTDSDGT--LLEIGTWSNE 1292

Query: 572  MAAGV 576
            MA GV
Sbjct: 1293 MAVGV 1297


>gi|321461347|gb|EFX72380.1| hypothetical protein DAPPUDRAFT_308316 [Daphnia pulex]
          Length = 1741

 Score =  584 bits (1506), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 296/517 (57%), Positives = 366/517 (70%), Gaps = 59/517 (11%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD Q  LE+H GPSP                  +RLETIGDSFLKYAIT +LYC Y +
Sbjct: 1223 FSFDEQQGLESHPGPSPSVILQAFTMSSANDGINLERLETIGDSFLKYAITTYLYCKYSS 1282

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            +HEG+LSHLRS+QVSN +L++LGK+K+FG  M+ATKF P +NWLPPGY +P  LE ALI 
Sbjct: 1283 IHEGELSHLRSRQVSNLHLYQLGKKKLFGGCMVATKFNPHENWLPPGYVIPDALEEALIS 1342

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSV-------------- 912
            +G P + WN + L  ++ +S E+V  ++++K   +       + SV              
Sbjct: 1343 SGIPLNYWNVVDLQGMEHMSSEQVKALVQEKSEQIMLRFGGKIPSVEEVAMDGNIFHAQD 1402

Query: 913  ----VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP------- 961
                VPYNL+TQHSIPDKSIADCVEALIGAYL  CGPRGALLFMSWLGLKV+P       
Sbjct: 1403 LPRFVPYNLLTQHSIPDKSIADCVEALIGAYLRACGPRGALLFMSWLGLKVLPVINEGSY 1462

Query: 962  -----PVT----NPESKHLS-DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 P++     P   H+  D +L GF+ FEE I Y+F D+SYLLQA +HASY+LN LT
Sbjct: 1463 GYWTPPISPLVDQPLDIHVELDRMLAGFESFEEKICYKFNDRSYLLQAFSHASYYLNRLT 1522

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            DCYQRLEFLGDA+LDYLITR+LYE+   H PG LTDLRSALVNN  FA LA R  FH +F
Sbjct: 1523 DCYQRLEFLGDAVLDYLITRYLYENLPRHPPGALTDLRSALVNNTTFAVLAERYEFHRYF 1582

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            KHLSP L++++ +F+K Q EN  ++N+EYY++     EAED+EVPK LGD+FESVAGAIY
Sbjct: 1583 KHLSPSLNQIMDKFIKAQEENGHSINEEYYMI-----EAEDVEVPKVLGDVFESVAGAIY 1637

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            LDS MSL+ VW+VYY +MK EI+  S +VPKSPIRELLELE +  +F K E+L DG R+R
Sbjct: 1638 LDSHMSLNAVWRVYYNMMKKEIDEFSKNVPKSPIRELLELETDRVKFGKAERLPDG-RLR 1696

Query: 1192 VTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228
            VTV+V GKG++KGIGRNY IAKCTAAK AL+ L+  K
Sbjct: 1697 VTVDVIGKGTFKGIGRNYRIAKCTAAKYALRTLEKRK 1733



 Score =  483 bits (1244), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 282/649 (43%), Positives = 382/649 (58%), Gaps = 56/649 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + NAI I+NRYCA+LPSD FTRL P+  I  +  D  + + CS++LPINSPL+++V    
Sbjct: 534  LQNAISIINRYCAKLPSDCFTRLTPVWRIQNVFLD--VAYICSLQLPINSPLRKTVLSQP 591

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE----NTEPVVPKTPEIETY 116
            MP+K+ A R AA+EACR+L++ KELD+   P  KE + L E    N +      PE    
Sbjct: 592  MPSKVTAKRSAALEACRLLHQKKELDDHFYPTGKENLRLEEEEDYNADLEEENVPENLPR 651

Query: 117  PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
            P +TKRRQ+Y+K++A  F N  P  + PCYLYA+ M L+ PIP+EQN RGRKI+ PE S 
Sbjct: 652  PGTTKRRQYYYKQVADPFINGIPRPDQPCYLYAITMVLSEPIPEEQNTRGRKIYKPETSI 711

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            Q L IL +K + ++C FPIFTR GEVEV I  I   + ++E  L     F  Y+F  VL 
Sbjct: 712  QSLGILNSKPLSQICPFPIFTRSGEVEVEIVKISDAIRVTEGQLKQISDFQRYIFRNVLS 771

Query: 237  LKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
            L+K  ML D   ++ SY IVP    + S+  ++ +D+ F+ LIS   +   Q I E+ R 
Sbjct: 772  LEKDPMLLDVYNADCSYLIVPLRRSSFSEHSKLSLDFVFIDLISSVRDSKPQLIAEEVRS 831

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
             +VFD   F DAVVM WYR+Q  P  FYVAEI   ++P+S FP   N Y TFE+YY  KY
Sbjct: 832  GYVFDPRLFSDAVVMKWYRDQEHPQCFYVAEIFYELNPQSKFPD--NNYPTFEKYYRHKY 889

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
            G+QIQNL+QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SE T++  RESL +KQ+LVPE
Sbjct: 890  GIQIQNLKQPLLDVDHTSARLNFLTPRYVNRKGVMLPTSSEHTKKTQRESLQQKQILVPE 949

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC IHPF ASLWR++V LP ILYRLN LLLA+++R  VA+EI LG+  L+    WP   F
Sbjct: 950  LCSIHPFSASLWRQAVCLPCILYRLNGLLLAEQLRCKVATEISLGRSQLEPGFCWPALRF 1009

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDS 532
             WK                            K  D A+  +  E    ++ D K  VC  
Sbjct: 1010 DWK---------------------------CKSSDPALPPLQRESIAKKVEDTKLKVCPE 1042

Query: 533  GNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDE 592
             N+  ++   K+ K +  E K +S G    ++IG W+ +   G   +         SD+ 
Sbjct: 1043 ENDA-SKSSSKVPKREIKEGK-KSAGAS-LLDIGVWNPDAINGSNNQ---------SDNG 1090

Query: 593  DSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALK 641
              N   S+ D D +D   E+E    ++ +F  K+    +C G+   A++
Sbjct: 1091 SYNSGQSANDSDTDDVSEEDESGCKVK-EFGPKF----VCRGDTAEAIE 1134


>gi|241061228|ref|XP_002408100.1| dicer-1, putative [Ixodes scapularis]
 gi|215492369|gb|EEC02010.1| dicer-1, putative [Ixodes scapularis]
          Length = 2050

 Score =  578 bits (1491), Expect = e-162,   Method: Compositional matrix adjust.
 Identities = 296/509 (58%), Positives = 367/509 (72%), Gaps = 48/509 (9%)

Query: 767  FDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVH 808
            FD +PDL +H+GPSP                  +RLET+GDSFLKYA+T  LYCT+P+VH
Sbjct: 1536 FDERPDLSSHSGPSPSILLQALTMSNANDGINLERLETVGDSFLKYAVTAHLYCTHPSVH 1595

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EGKLSHLRS+Q+SN NL++LG+ +  G  M+ATKFEP DNWLPPGY VP  LE ALIE+G
Sbjct: 1596 EGKLSHLRSRQISNLNLYRLGRARRLGGLMVATKFEPSDNWLPPGYVVPPGLERALIESG 1655

Query: 869  FPASLWNCLSLPNLKELSPEKVLEII---KQKCVDLDCTV----DMNVQSVVPYNLVTQH 921
             PA  WN  +L  L ++  E++ + +   ++K  +L+  +     ++    VPYNL+TQH
Sbjct: 1656 LPAGHWNIGALAGLTQMDEEEIRQTLAERRKKVRNLEEVLAEESGLDAAPYVPYNLLTQH 1715

Query: 922  SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-------------------- 961
            SIPDKSIADCVEALIGAYL+ CGPR  LLFMSWLGL+V+P                    
Sbjct: 1716 SIPDKSIADCVEALIGAYLVSCGPRATLLFMSWLGLEVLPRDRTAEALRDVSAPLYRTLE 1775

Query: 962  -PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
             P+ +P+       LL G+D FE  I YRF+D++YLLQA THASY  N LTDCYQRLEFL
Sbjct: 1776 SPLVSPDDGSALAQLLSGYDAFEARIGYRFRDRAYLLQAFTHASYHYNRLTDCYQRLEFL 1835

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDA+LDYLITRHLY+D + HSPGTLTDLRSALVNN  FASLAV+  FH +FK++SPGL  
Sbjct: 1836 GDAVLDYLITRHLYDDPQRHSPGTLTDLRSALVNNTFFASLAVKYDFHRYFKNVSPGLFA 1895

Query: 1081 VIQRFVKMQAEND-FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
            VIQRFV+ +  +D F  +++YYL E EC+EAE++EVPKALGD+FESVAGAI+LDS MSLD
Sbjct: 1896 VIQRFVETKCHSDGFRYHEKYYLEEEECEEAEEVEVPKALGDIFESVAGAIFLDSNMSLD 1955

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGK 1199
            TVW+VYY +MK EIE  S  VPKSPIRELLELEP+ A+F + E   +G +VR+ VEVFGK
Sbjct: 1956 TVWRVYYAMMKPEIEYFSTHVPKSPIRELLELEPQTAKFERAEMTLNG-KVRIRVEVFGK 2014

Query: 1200 GSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228
            G + G+GRN  IAKCTAAK AL+ LK  +
Sbjct: 2015 GRFVGVGRNKRIAKCTAAKRALRALKRMR 2043



 Score =  406 bits (1043), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 219/501 (43%), Positives = 313/501 (62%), Gaps = 40/501 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIK---EDDSIMFTCSIRLPINSPLKRSVT 57
            M  AI +VNRYCA+LPSD FTRL P  +++E+    + D+ ++ CS+ LPINSPLKR + 
Sbjct: 736  MSTAIALVNRYCAKLPSDTFTRLTPTSSMTEVNVEGDRDTTLYRCSLHLPINSPLKRCIV 795

Query: 58   GHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLY----------ENTEPVV 107
            G  MP KLLA +  A++ C  L+++ ELD++L+P  KE + L           E  +P  
Sbjct: 796  GDPMPGKLLAKQAVALKTCEELHKMGELDDNLVPQGKEAMRLALDQSAGRFPEEELQPGA 855

Query: 108  PKTPEIETYPDSTKRRQFYHKR--MASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
            P+       P +TKRRQ+Y K+  +    T+ R ++ TP Y+   +  +T P   EQ KR
Sbjct: 856  PR-------PGTTKRRQYYDKKPLLDVDHTSARLNLLTPRYVN--RKGVTLPTSSEQTKR 906

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVC---SFPIFTRCGEVEVSIELIDKNVV-LSEENLS 221
             ++      S Q   IL    +P++C    FP+FTR GEV V +E +  ++  L+ + + 
Sbjct: 907  AKR-----ESLQQKQIL----VPELCLVHPFPVFTRSGEVTVRLEHVSSSLGPLTSQQVG 957

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHND 281
            +   F  Y FT VL+L+KY M FDP  +  S+ +VP ++ +    +   F+  I E  + 
Sbjct: 958  DLRNFHRYTFTNVLRLEKYPMTFDPQGNACSFLVVP-INHAPPAALTGLFVQRICEEQSF 1016

Query: 282  VIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
              + IPE+ERE FVF E  + D VVMPWYRN  +P +FYVAEI  +++P+S FP     +
Sbjct: 1017 APRRIPEEERELFVFKEEDYLDTVVMPWYRNLDKPQFFYVAEICHDLNPKSDFPD--AGF 1074

Query: 342  QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            +TF+ YY  KY +++ +  QPLLDVDHTS RLN LTPRYVNRKG+ L T+SE+T+R  RE
Sbjct: 1075 ETFDAYYREKYDIRVVDGRQPLLDVDHTSARLNLLTPRYVNRKGVTLPTSSEQTKRAKRE 1134

Query: 402  SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVIL 461
            SL +KQ+LVPELCL+HPFPASLWRK+V LP +LYR+N+LLLA+++R  VA E+ +G   L
Sbjct: 1135 SLQQKQILVPELCLVHPFPASLWRKAVCLPCVLYRMNSLLLAEQLRLTVAREVHVGTPEL 1194

Query: 462  DEKVEWPPFNFGWKMKKLKEK 482
                EWP  +FGW +  +  K
Sbjct: 1195 PGDFEWPTLDFGWTLADVLRK 1215


>gi|193582606|ref|XP_001943370.1| PREDICTED: endoribonuclease Dcr-1-like [Acyrthosiphon pisum]
          Length = 1626

 Score =  564 bits (1454), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 291/499 (58%), Positives = 340/499 (68%), Gaps = 87/499 (17%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL  H GPSP                  +RLETIGDSFLKYA+T +LYCT+ N
Sbjct: 1172 FSFDFQPDLNYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNN 1231

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEG LS LRS  VSN NL++LGK K+FGE MI+TKFEPR NWLPP Y  P  LE A+I 
Sbjct: 1232 VHEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVIN 1291

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            +                                                  +TQH   DK
Sbjct: 1292 SNIS-----------------------------------------------ITQHITNDK 1304

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVI-------------PP------VTNPE 967
            SIADCVEALIGAYLI CG RGALLFMSWLG+ V+             PP      V +PE
Sbjct: 1305 SIADCVEALIGAYLISCGTRGALLFMSWLGITVLNTLDDSKLGYLKLPPSPLLRNVNDPE 1364

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
             +     L+DGF+ FE+ + Y F+D+SYLLQAMTHASY+ N LTDCYQRLEFLGDA+LDY
Sbjct: 1365 GELTK--LMDGFESFEQHLGYYFQDRSYLLQAMTHASYYPNCLTDCYQRLEFLGDAVLDY 1422

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LITRHLYED+R H PG LTDLRSALVNN IFASLAV+ GFH + KHLSPGL EV+ RFV 
Sbjct: 1423 LITRHLYEDKRRHPPGALTDLRSALVNNTIFASLAVKNGFHKYLKHLSPGLSEVVYRFVA 1482

Query: 1088 MQAENDFTLNQEY-YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +Q EN  T+++E+ +  E + ++AED+E PK LGD+FESVAGAIYLDS MSLD VWKVY+
Sbjct: 1483 IQEENGHTIDEEFCFSGEDDFEDAEDVEAPKVLGDIFESVAGAIYLDSNMSLDAVWKVYH 1542

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
            +IM++EI++ S +VP SP+RELLELEP  A+FSKPEKL DGRRVRV VE+ GKG +KGIG
Sbjct: 1543 KIMENEIKQFSKNVPISPVRELLELEPNTAKFSKPEKLVDGRRVRVIVEILGKGVFKGIG 1602

Query: 1207 RNYCIAKCTAAKCALKHLK 1225
            RNY IAKCTAAKCAL HLK
Sbjct: 1603 RNYRIAKCTAAKCALNHLK 1621



 Score =  516 bits (1328), Expect = e-143,   Method: Compositional matrix adjust.
 Identities = 272/581 (46%), Positives = 369/581 (63%), Gaps = 48/581 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  AI +VNRYCA+LPSD FT+L+PI  I  I  ++  MF CSIRLPINSP+K  + GH 
Sbjct: 606  MATAIGLVNRYCAKLPSDTFTKLSPIWKIQSIVYENQPMFVCSIRLPINSPIKHEIHGHP 665

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI------- 113
            MP ++LA RIAA+E CR +Y   +LD+ L P+TKE  +   NT+ ++P T +        
Sbjct: 666  MPCEILAKRIAALEVCRQIYSQGQLDDTLQPITKESFHALFNTDEIIPDTEDSLITCKTK 725

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            ++ P + KRRQ Y+KR A    +CRP    PC+LYA+ + +TCPIP+++N + R+IHPPE
Sbjct: 726  DSMPGTYKRRQHYYKRTAEALNDCRPVEGKPCHLYAILLNITCPIPEQENTKSRRIHPPE 785

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             S  G  ILTTK+IP + +FPI+ RCGEV V ++ I  ++ L++  L N   F++Y F+ 
Sbjct: 786  ESIHGFGILTTKHIPSIPAFPIYPRCGEVYVRLKRIKTDMFLTQHQLDNIATFLNYTFSN 845

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSD-SEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
            VL  KK  + F+P  + N Y+IVPT+ D S  I +DWK +  +    ++ +  I  ++R 
Sbjct: 846  VLCFKKCRVEFNPTTTHNCYYIVPTLRDASGSIDVDWKILDNVQTFRDNKLSIITNEDRI 905

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
            +F  D    +DAVV PWYRNQ +P YFYV EI T+++P+S FP  T  Y+TFE++Y  KY
Sbjct: 906  HFQPDIEVLKDAVVTPWYRNQEQPEYFYVEEICTHLNPKSPFPDPTEKYKTFEDFYYHKY 965

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             L+IQNLEQPLLDVD TS RLNFLTPRY+N KG  L T+S+ T+R  R  L  KQ+LVPE
Sbjct: 966  SLKIQNLEQPLLDVDPTSARLNFLTPRYMNCKGEYLPTSSDATKRAKRYDLSHKQILVPE 1025

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC IH FPAS+WR +VSLPSILYR+NALLLADEIRT VA +  LG V L     W P +F
Sbjct: 1026 LCNIHLFPASMWRDAVSLPSILYRINALLLADEIRTIVAKDTSLGLVNLSFDHIWKPLDF 1085

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDS 532
            GW +K              DV++   E                EI+ +++++  ETV   
Sbjct: 1086 GWPIK--------------DVLIRRKEQK--------------EISTIKVIEPVETVKRF 1117

Query: 533  GNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
             +E E   EEK+D++ +D N         W+EIGTWSN+MA
Sbjct: 1118 IDEVEK--EEKIDEL-NDPN---------WMEIGTWSNDMA 1146


>gi|89114044|gb|ABD61613.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEKRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114038|gb|ABD61610.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  447 bits (1149), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 IEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114050|gb|ABD61616.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  446 bits (1148), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTSRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114042|gb|ABD61612.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  552 bits (1423), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P ++    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTQAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114040|gb|ABD61611.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  445 bits (1144), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 231/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P ++    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTQAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114046|gb|ABD61614.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 KAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114048|gb|ABD61615.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 286/607 (47%), Positives = 396/607 (65%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 KAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I   +ET  
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPI--SEETQL 1288

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            D  ++ +  ++  ++ I   E K   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1289 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  446 bits (1146), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRHLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114036|gb|ABD61609.1| Dicer-1 [Drosophila simulans]
          Length = 2043

 Score =  549 bits (1414), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 285/607 (46%), Positives = 394/607 (64%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   ++ +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTKSERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDAQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL+IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLKIQNASQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K                   ++ +DD+   +   E+AK  I ++ +   
Sbjct: 1243 DFGWSLSEVLKK------------SRXXXXXESLKDDTINGKDLVEVAKKPISEETQLDK 1290

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
            DS +++     EK       E +   Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1291 DSKDDK----VEKSAIELIIEGEEXLQEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  446 bits (1147), Expect = e-122,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPXTPTKAISSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEXRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATXELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114024|gb|ABD61603.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 286/609 (46%), Positives = 393/609 (64%), Gaps = 41/609 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL--KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
            +FGW + ++  K +     +   D  ++  ++ D +      N+  +E  +++   K + 
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKDDTINGKDLADVE------NKPTSEETQLDKDSKDDK 1296

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMF 588
            V  S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F
Sbjct: 1297 VEKSAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------F 1335

Query: 589  SDDEDSNDD 597
            + ++D  DD
Sbjct: 1336 NQEDDDEDD 1344



 Score =  443 bits (1139), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 IEIEPPTSTKAIISAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114034|gb|ABD61608.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  547 bits (1409), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 286/609 (46%), Positives = 393/609 (64%), Gaps = 41/609 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P+KER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDKER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL--KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
            +FGW + ++  K +     +   D  ++  ++ D ++  +      +E  +++   K + 
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKDDTINGKDLADVEKKPT------SEETQLDKDSKDDK 1296

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMF 588
            V  S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F
Sbjct: 1297 VEKSAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------F 1335

Query: 589  SDDEDSNDD 597
            + ++D  DD
Sbjct: 1336 NQEDDDEDD 1344



 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDHLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114028|gb|ABD61605.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  546 bits (1408), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/607 (47%), Positives = 391/607 (64%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K         + + DDT +N     D      C E  +++   K + + 
Sbjct: 1243 DFGWSLSEVLKKS--RXXXXXESLKDDT-INGKDLADVEKKPTCEE-TQLDKDSKDDKIE 1298

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
             S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1299 KSAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF+KFEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEKFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114026|gb|ABD61604.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  546 bits (1407), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 288/607 (47%), Positives = 391/607 (64%), Gaps = 37/607 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            +FGW + ++ +K         + + DDT +N     D      C E  +++   K + + 
Sbjct: 1243 DFGWSLSEVLKKS--RXXXXXESLKDDT-INGKDLADVEKKPTCEE-TQLDKDSKDDKIE 1298

Query: 531  DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSD 590
             S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F+ 
Sbjct: 1299 KSAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------FNQ 1337

Query: 591  DEDSNDD 597
            ++D  DD
Sbjct: 1338 EDDDEDD 1344



 Score =  444 bits (1142), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            +ITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 IITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114020|gb|ABD61601.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  546 bits (1406), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 285/609 (46%), Positives = 393/609 (64%), Gaps = 41/609 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL--KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
            +FGW + ++  K +     +   D  ++  ++ D ++  +      +E  +++   K + 
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKDDTINGKDLADVEKKPT------SEETQLDKDSKDDK 1296

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMF 588
            V  S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F
Sbjct: 1297 VEKSAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------F 1335

Query: 589  SDDEDSNDD 597
            + ++D  DD
Sbjct: 1336 NQEDDDEDD 1344



 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114032|gb|ABD61607.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  545 bits (1404), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 392/616 (63%), Gaps = 55/616 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL---------KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVE 521
            +FGW + ++          E    DT +  D++  D E   T E+        T++ K  
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKNDTINGKDLV--DVEKKPTSEE--------TQLDKDS 1292

Query: 522  IVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPY 581
              DK E    S  E   E EEKL            Q  + ++EIGTWSN+MA  +     
Sbjct: 1293 KDDKVEK---SAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS--- 1334

Query: 582  PMTPPMFSDDEDSNDD 597
                  F+ ++D  DD
Sbjct: 1335 ------FNQEDDDEDD 1344



 Score =  442 bits (1137), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKVIPPVT-----------------NPESK---------------HLS-- 972
            GALLFM+WLG++V+P                    NPE+                H +  
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNPENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114030|gb|ABD61606.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  545 bits (1403), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 292/616 (47%), Positives = 392/616 (63%), Gaps = 55/616 (8%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL---------KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVE 521
            +FGW + ++          E    DT +  D++  D E   T E+        T++ K  
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKNDTINGKDLV--DVEKKPTSEE--------TQLDKDS 1292

Query: 522  IVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPY 581
              DK E    S  E   E EEKL            Q  + ++EIGTWSN+MA  +     
Sbjct: 1293 KDDKFEK---SAIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS--- 1334

Query: 582  PMTPPMFSDDEDSNDD 597
                  F+ ++D  DD
Sbjct: 1335 ------FNQEDDDEDD 1344



 Score =  444 bits (1143), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 231/419 (55%), Positives = 276/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ +P +P K+    ++     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 MEIQPPTPTKAITSALL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|89114022|gb|ABD61602.1| Dicer-1 [Drosophila melanogaster]
          Length = 2043

 Score =  544 bits (1401), Expect = e-151,   Method: Compositional matrix adjust.
 Identities = 285/609 (46%), Positives = 393/609 (64%), Gaps = 41/609 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VN+YCARLPSD FT+L  +   +  +     +F  ++RLPINSPLK  + G  
Sbjct: 765  LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 824

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY---- 116
            MPT+ LA R+AA++AC  L+ + ELD+ L P+ KE     E         PE E      
Sbjct: 825  MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 884

Query: 117  ----PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
                P +TKRRQ+Y+KR+AS F +CRP    PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 885  DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 944

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
            E++ QG  ILTTK IPK+ +F IFTR GEV+VS+EL  + V+L+ E +     F++Y FT
Sbjct: 945  EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1004

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL+L+K+LMLFDP+ +EN  FIVPTV + +    IDW+F+ LI  + N + + +P++ER
Sbjct: 1005 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1064

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            +   FD  +F+DAVVMPWYRNQ +P YFYVAEI  ++ P S FP   + Y+TF+ YY +K
Sbjct: 1065 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1122

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            YGL IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVP
Sbjct: 1123 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1182

Query: 412  ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVEWPPF 470
            ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR  V++++GLG+  I DE  EWP  
Sbjct: 1183 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1242

Query: 471  NFGWKMKKL--KEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKET 528
            +FGW + ++  K +     +   D  ++  ++ D ++  +      +E  +++   K + 
Sbjct: 1243 DFGWSLSEVLKKSRXXXXXESLKDDTINGKDLADVEKKPT------SEEIQLDKDSKDDK 1296

Query: 529  VCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMF 588
            V  S  E   E EEKL            Q  + ++EIGTWSN+MA  +           F
Sbjct: 1297 VEKSDIELIIEGEEKL------------QEADDFIEIGTWSNDMADDIAS---------F 1335

Query: 589  SDDEDSNDD 597
            + ++D  DD
Sbjct: 1336 NQEDDDEDD 1344



 Score =  444 bits (1141), Expect = e-121,   Method: Compositional matrix adjust.
 Identities = 232/419 (55%), Positives = 275/419 (65%), Gaps = 77/419 (18%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------ 781
            ++ EP +  K+    I+     P+ FSFD QPDL  H GPSP                  
Sbjct: 1630 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSPSIILQALTMSNANDGINL 1684

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K  GE MIAT
Sbjct: 1685 ERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEYMIAT 1744

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KFEP DNWLPP Y+VPK LE ALIEA  P   W    L ++K LS  ++ E++++K   L
Sbjct: 1745 KFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREKADAL 1804

Query: 902  DCTVDMNVQS---------------VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                +   Q+                +PYNLV+QHSIPDKSIADCVEALIGAYLIECGPR
Sbjct: 1805 GLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIECGPR 1864

Query: 947  GALLFMSWLGLKV---------------IPPVTNPESKHLS------------------- 972
            GALLFM+WLG++V               IP  T P ++++                    
Sbjct: 1865 GALLFMAWLGVRVLPITRQLDGGNQEQRIPGSTKPNAENVVTVYGAWPTPRSPLLHFAPN 1924

Query: 973  -----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
                 D LL GF++FEES+ Y+F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDA+LDY
Sbjct: 1925 ATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDY 1984

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            LITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RFV
Sbjct: 1985 LITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFV 2043


>gi|443725259|gb|ELU12939.1| hypothetical protein CAPTEDRAFT_223153 [Capitella teleta]
          Length = 1651

 Score =  513 bits (1321), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 281/526 (53%), Positives = 349/526 (66%), Gaps = 59/526 (11%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFL 800
            T T     FD + DL N  GPSP                  +RLETIGDSFLK+AIT++L
Sbjct: 1109 TDTTHRIKFDEEFDLVNFIGPSPCLILQTLTMSNANDFFNLERLETIGDSFLKFAITVYL 1168

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK-- 858
            YC YP +HEGKLS+LRSKQVSNYNL+KLGK+K   + M+A KFEP +NWLPPGY + K  
Sbjct: 1169 YCEYPGIHEGKLSYLRSKQVSNYNLYKLGKKKGLPDCMVAVKFEPTENWLPPGYVIRKEG 1228

Query: 859  -YLETALIEAGFPASLWNCL---SLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQS--- 911
             Y    +  A  PA L       S    +E  P+  +E   ++  +     D  ++    
Sbjct: 1229 AYKGLNVRIASIPAPLLAPAFNESGSKKEEQLPDGQMEKFTKELEECTKAEDEKLKGSDI 1288

Query: 912  ---VVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPES 968
               ++PYNL TQHS+PDKSIAD VEALIG YL+ CG R AL FMSWLGL+V+P V   + 
Sbjct: 1289 PHMLIPYNLQTQHSLPDKSIADGVEALIGCYLVTCGQRAALQFMSWLGLRVLPNVKPADK 1348

Query: 969  KHLS----------------------DVL---LDGFDKFEESINYRFKDKSYLLQAMTHA 1003
             +L+                      DVL   LDG+++FEE I Y+F+D+SYLLQA THA
Sbjct: 1349 NNLAMSGFSCLPPPPSPLLTHVSNSEDVLKHLLDGYEEFEEKICYKFRDRSYLLQAFTHA 1408

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  NT+TDCYQRLEFLGDAILDY+ITRHL+ED   HSPG LTDLRSALVNN IFA+LAV
Sbjct: 1409 SYHYNTVTDCYQRLEFLGDAILDYVITRHLFEDSEKHSPGVLTDLRSALVNNNIFAALAV 1468

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN---QEYYLMEGECDEAEDIEVPKALG 1120
            +  FH +F+ +SP L  VI +FV  Q + +  +N   +   L E      EDIE+PKALG
Sbjct: 1469 KWNFHKYFRAISPQLFYVIDKFVTWQKDRNDEINLDEEFGELEEDGEGTEEDIEIPKALG 1528

Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK 1180
            D+FESVAGAIYLDSGMSLDTVW+VYY +MK +I+  +  +PKSP+RELLE+EPE A+F K
Sbjct: 1529 DIFESVAGAIYLDSGMSLDTVWQVYYRMMKPQIDAFTERIPKSPVRELLEMEPETAKFEK 1588

Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            PE+  DG ++RVTV V GKG+++GIGRNY IAK  AAK ALKH+KS
Sbjct: 1589 PERTMDG-KIRVTVNVVGKGNFRGIGRNYRIAKSAAAKRALKHIKS 1633



 Score =  453 bits (1165), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 230/479 (48%), Positives = 314/479 (65%), Gaps = 6/479 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M +AI +VNRYC +LPSD FT L P   +  I E D   +  +++LPINSP+KR + G  
Sbjct: 604  MSSAIALVNRYCGKLPSDAFTHLTPKCQVQAINEADQETWRATLQLPINSPIKRPIYGEA 663

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            MP++ LA    A++ C +L++  ELD+ L+P+ KE I   +          +    P +T
Sbjct: 664  MPSRKLAMMAVALKTCEILHQQGELDDHLLPIGKEMIKYEDEENEWEDHETQGHARPGTT 723

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KR+Q+Y K+ AS     +P  N PC+LY    +LTCPI +EQN RGRKIH PE+S +G  
Sbjct: 724  KRKQYYLKKTASTLLG-QPQPNEPCHLYIFDTRLTCPITEEQNTRGRKIHAPEDSARGFG 782

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            I+T + IP V  FP+FTR GEV VSI+ +D     + E L     F  ++FT+VL+L+K 
Sbjct: 783  IITVRKIPLVPHFPVFTRSGEVTVSIDPVDSEFTFTAEQLPQICHFHRFIFTRVLRLEKD 842

Query: 241  LMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLI--SEHHNDVIQDIPEKERENFVFDE 298
             M+FDP  + +SYFIVP + D++ I +DW F+  I  S  H    + +P+ ++E FVF+E
Sbjct: 843  PMVFDPKKAMSSYFIVPLLKDADGIRVDWDFVGEIQKSPLHLTRRKYLPDAKKEAFVFNE 902

Query: 299  SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQN 358
              F DAVVMP YRN  +P YFYVAEI  +++P+  FPS    Y TFE YY  KYGL I N
Sbjct: 903  DDFHDAVVMPSYRNIDQPQYFYVAEIRKDLNPKCPFPS-PELYDTFELYYKSKYGLGITN 961

Query: 359  LEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHP 418
            L+QPLLDVDHTS RLN LTPRY+N+KG+ L T+S ETRR  RE+L +KQ+L+PELC IHP
Sbjct: 962  LDQPLLDVDHTSARLNLLTPRYMNQKGVALPTSSAETRRARRENLQQKQILIPELCDIHP 1021

Query: 419  FPASLWRKSVSLPSILYRLNALLLADEIRTAV--ASEIGLGKVILDEKVEWPPFNFGWK 475
            FPASLWRK+V +P+ILYR+N LL+A+E+R  +  A+ IG+ +V +D +     F F  K
Sbjct: 1022 FPASLWRKAVCIPAILYRMNYLLVAEEMRLMISTAAHIGVPQVPVDFRFSELEFGFSTK 1080


>gi|312376925|gb|EFR23878.1| hypothetical protein AND_11907 [Anopheles darlingi]
          Length = 1462

 Score =  510 bits (1314), Expect = e-141,   Method: Compositional matrix adjust.
 Identities = 267/531 (50%), Positives = 343/531 (64%), Gaps = 61/531 (11%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-----S 55
            + NA+  +N+YCA+LPSD FT+L PI   +    +D  ++  +IRLPINSP K      S
Sbjct: 872  LSNAVQTLNKYCAKLPSDTFTKLTPIWRCATTVRNDRTLYQYTIRLPINSPWKEDILVSS 931

Query: 56   VT-----------------GHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFIN 98
            VT                 G  MPT+ LA R+AA  ACR+L+   ELD+   P  KE   
Sbjct: 932  VTRCLCKNSILRIRIHHTQGLPMPTETLARRMAAYIACRMLHAAGELDHSFQPFGKEAFR 991

Query: 99   ------------------LYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPS 140
                              L EN +P           P +TKRRQ+Y+KR+AS F  CRP 
Sbjct: 992  AFEADWENFELDELDAKILSENNDP----------RPGTTKRRQYYYKRIASVFNECRPE 1041

Query: 141  VNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCG 200
            V T  YLY ++M+L CPIP+EQN RGRKI+ PE SPQG  ILTTK IPK+ SFPIFTR G
Sbjct: 1042 VGTTAYLYYMRMELICPIPEEQNTRGRKIYAPEESPQGFGILTTKLIPKISSFPIFTRSG 1101

Query: 201  EVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV- 259
            EV+VS++L  + V L+E+ LS    F+ Y FTKVL+L+K LML+D N +EN +FIVPT+ 
Sbjct: 1102 EVKVSLDLCPQRVQLTEQQLSMVNCFVRYTFTKVLRLQKSLMLYDANATENCFFIVPTIR 1161

Query: 260  ---SDSEQIVIDWKFMTLISEHHNDVIQD-IPEKERENFVFDESKFRDAVVMPWYRNQFE 315
                D   + +DW F+  I+ + +      IP++ R+ + FD ++FRDAVVMPWYRN+ +
Sbjct: 1162 KQTDDGGDVQVDWAFVEKIALNVDRSGPTFIPDEARKGYQFDVNRFRDAVVMPWYRNRDQ 1221

Query: 316  PTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNF 375
            P YFYVAEI  ++ P+S FP   + Y TFEEYY  KY +QIQN+ QPLLDVDHTS RLNF
Sbjct: 1222 PQYFYVAEICHHLSPKSAFPG--SNYATFEEYYHRKYDIQIQNVRQPLLDVDHTSARLNF 1279

Query: 376  LTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILY 435
            LTPRYVNRKG+ L T+SEET+R  RE+L +KQ+LVPELC IHPFPASLWR +V LP +LY
Sbjct: 1280 LTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLY 1339

Query: 436  RLNALLLADEIRTAVASEIGLGKVILDE----KVEWPPFNFGWKMKKLKEK 482
            R+NALLLADEIR  VA ++ LG+  LD+    K EWP  +FGW +  +  K
Sbjct: 1340 RINALLLADEIRRQVARDLKLGREDLDQLEGGKFEWPMLSFGWNLADVLRK 1390


>gi|391341486|ref|XP_003745061.1| PREDICTED: endoribonuclease Dicer [Metaseiulus occidentalis]
          Length = 1863

 Score =  477 bits (1228), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 271/504 (53%), Positives = 328/504 (65%), Gaps = 60/504 (11%)

Query: 762  PSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCT 803
            P++    F  D     GPSP                  +RLET+GDSFLKYAIT +LYCT
Sbjct: 1341 PAEIRIRFDDDDSESCGPSPAILLQALTMSNANDGINLERLETVGDSFLKYAITNYLYCT 1400

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETA 863
            Y  VHEGKLS LRSKQ+SN NL++LGK+   G  M+ATKFEP DNWL PG+ +P+ LE A
Sbjct: 1401 YLGVHEGKLSFLRSKQISNVNLYRLGKELGIGSLMVATKFEPSDNWLAPGFCIPEGLEKA 1460

Query: 864  LIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSI 923
            ++++  P S  N     +  E S E                        VPY+L+T HSI
Sbjct: 1461 VLDSKIPNSHCNISQFKD-GEASGEG---------------------EFVPYSLLTHHSI 1498

Query: 924  PDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI-----------------PPVTNP 966
            PDKSIADC+EALIGAYL+ CG    L  M+W GL+V+                 PP+   
Sbjct: 1499 PDKSIADCLEALIGAYLVSCGRCNTLKCMTWFGLRVLPLDCEGDAFASLFKKIPPPLPAS 1558

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
              + +   LL G   FEE I Y+FK+K +LLQA THASY  NTLTDCYQRLEFLGDA+LD
Sbjct: 1559 YDERVLRQLLHGHVSFEERIGYKFKNKGFLLQAFTHASYHYNTLTDCYQRLEFLGDAVLD 1618

Query: 1027 YLITRHLYEDE-RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            YLITR+LYED  + HSPG LTDLRSALVNN  FA+LAV+  FH +F +LSP L ++I RF
Sbjct: 1619 YLITRYLYEDPVKQHSPGALTDLRSALVNNTFFAALAVKYEFHKYFLNLSPRLFKLIHRF 1678

Query: 1086 VKMQAE-NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            V  +   +     ++YYL E EC+EAE+IEVPKALGD+FESVAGAIYLDSGMSLDT W V
Sbjct: 1679 VSTKKHLSGKQYFEKYYLGEDECEEAEEIEVPKALGDIFESVAGAIYLDSGMSLDTTWNV 1738

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
            Y  +MK EIE  S  VPKSPIRELLELEP+ A+F K E   +G ++RV VEVFGKGS+ G
Sbjct: 1739 YLAMMKPEIEYFSKHVPKSPIRELLELEPQTAKFEKAELTLNG-KIRVKVEVFGKGSFIG 1797

Query: 1205 IGRNYCIAKCTAAKCALKHLKSAK 1228
            IGRN  IAKCTAAK AL+ ++  K
Sbjct: 1798 IGRNKRIAKCTAAKRALRSVEQRK 1821



 Score =  413 bits (1061), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 217/486 (44%), Positives = 300/486 (61%), Gaps = 18/486 (3%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + N+I I+NRYC RLPSD  T+LAP+  I+++ +D    + C +RLPINSPLK  + G  
Sbjct: 591  LSNSIAIINRYCLRLPSDTLTKLAPVFRINKLPDD---TYQCVLRLPINSPLKEEIVGEP 647

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIE---TYP 117
            M T +LA +  ++ A   L++  E+D+ L P  K+ +   +  + VVP    +      P
Sbjct: 648  MATPVLAKQDVSLRALERLHKRGEIDDHLSPFGKDSLKA-KTEDQVVPLDETVAHGAARP 706

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCY-LYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
             +TKRRQ+YHK +A  F     +++T  + LY + MKL C IP+EQN R R I+ P +SP
Sbjct: 707  GTTKRRQYYHKSLAPPFQG---TLDTETFFLYNISMKLLCAIPEEQNSRARTIYDPADSP 763

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +G   ++   +  +C FPI+TR GEV V +E +   + L+EE       F  Y+F  VL+
Sbjct: 764  RGFGFVSGTRLTPLCPFPIYTRSGEVMVDVEELSCALPLTEEQRKKAEFFHAYVFRDVLR 823

Query: 237  LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVF 296
            L+K+ M FD   S   + I+P    S    ++W F+  I          + E+ER +F F
Sbjct: 824  LEKFPMKFDLKASRAGFLIIPITDGS----VEWSFIDRIMNEDEFKPHKVDEEERRSFTF 879

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
            +   F DAVVMPWYRN  +P +FYVA I   + P S FP+    ++TF++YY  KY + I
Sbjct: 880  NREIFSDAVVMPWYRNIDKPQFFYVANICEQLTPVSEFPA--TPFKTFDDYYRHKYNIGI 937

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             N  QPLLDVDHTS RLN LTPRYVNRKG++L T+SEE+R+  RE+L +KQ+LVPELCLI
Sbjct: 938  CNKSQPLLDVDHTSARLNLLTPRYVNRKGVSLPTSSEESRKAKRENLQQKQILVPELCLI 997

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
            HPFPASLWRK V LP ILYR+N LLLAD IR  + +  G+GK  L E  +W    FGW +
Sbjct: 998  HPFPASLWRKVVCLPCILYRMNHLLLADSIRMRIVNACGVGKAELPEGFKWKMLTFGWTL 1057

Query: 477  KK-LKE 481
             + LKE
Sbjct: 1058 TEVLKE 1063


>gi|109478606|ref|XP_001068155.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
 gi|109479876|ref|XP_001069041.1| PREDICTED: endoribonuclease Dicer [Rattus norvegicus]
 gi|149025439|gb|EDL81806.1| rCG20888 [Rattus norvegicus]
          Length = 1918

 Score =  467 bits (1201), Expect = e-128,   Method: Compositional matrix adjust.
 Identities = 316/867 (36%), Positives = 440/867 (50%), Gaps = 117/867 (13%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELVTRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFQPAGAESAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +      
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLD------ 1095

Query: 478  KLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKE--TVCDSGNE 535
                 +GW                                     +D K   + C+S + 
Sbjct: 1096 -----FGWKKS----------------------------------IDSKSFISTCNS-SL 1115

Query: 536  QENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSN 595
             E+++  K       EN        P +E     N     V CK  P   P     E S 
Sbjct: 1116 AESDNYCKHSTTVVPENAAHQGATRPSLE-----NHDQMSVNCKRLPAESPAKLQSEVSV 1170

Query: 596  DDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFWEEI 655
            D L++++    +    N   D +   F         C+G + +           +F +EI
Sbjct: 1171 D-LTAINGLSYNKSLANGSYDLVNRDF---------CQGNQLT-----------YFKQEI 1209

Query: 656  DVNHINSKAEFVKVIQDKLTFYEGQ------LELIKNRIDVENTIKENQPVHIVRQSFDN 709
             V    S       IQ+ L  YE Q        L+ N+      +  N        S   
Sbjct: 1210 PVQPTTSYP-----IQN-LYNYENQPTPSNECPLLSNKY-----LDGNANTSTSDGSPAG 1258

Query: 710  ASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDF 769
            +  P+  TA+  E LE         SV    +T   +PG      +I    T S+ S  F
Sbjct: 1259 SPRPAMMTAV--EALEGRTDSEQSPSVGHSSRTLGPNPG------LILQALTLSNASDGF 1310

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
              +LE        RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LG
Sbjct: 1311 --NLE--------RLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLG 1360

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFV 856
            K++     M+ + F+P  NWLPPGY V
Sbjct: 1361 KKQGLPSRMVVSIFDPPVNWLPPGYVV 1387



 Score =  359 bits (921), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 199/384 (51%), Positives = 251/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1532 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1591 VIKRTSRDKASYPAQENSSSQQKSPSGSCAAAVSPRSSAGKDLEYGCLKIPPRCMFDHPD 1650

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1651 AEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1710

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+
Sbjct: 1711 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ 1770

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1771 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1830

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1831 YPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1889

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1890 GRSYRIAKSAAARRALRSLKANQP 1913


>gi|283131646|dbj|BAI63215.1| Dicer [Hemicentrotus pulcherrimus]
          Length = 1816

 Score =  464 bits (1193), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 262/540 (48%), Positives = 325/540 (60%), Gaps = 97/540 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK A+T +LYCTYP++ EGKLS LRSKQVSN+NL+ LG++K     M  +
Sbjct: 1275 ERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNFNLYCLGEKKALAHKMQVS 1334

Query: 842  KFEPRDNWLPPGYFV-------PKYLETALIEAGFPASLWNCLSLP-------------- 880
             F+P  NWLPP   V       PK       +AGF    W+  ++               
Sbjct: 1335 LFDPSINWLPPCMLVKESSKPIPKEETETDPDAGFVIDTWDPSTVEGVDDFDDDDFDSDQ 1394

Query: 881  ----NLKELSPEKVLEIIKQKCVD-----------------------------LDCTVDM 907
                N  + S E++ E  K +C D                                T D+
Sbjct: 1395 CWEENSDDFSDEEIDET-KAECPDDFFAREEKDKEQWSFSVGDPDDVPGLTYTGAKTQDL 1453

Query: 908  NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN-- 965
                 +PY + TQHS+ DKSIADCVEALIG YL+ CG R ALL M+W+GL V+P + +  
Sbjct: 1454 GSVPQLPYEIHTQHSMSDKSIADCVEALIGCYLVSCGFRSALLIMAWMGLDVLPAINDQS 1513

Query: 966  --------------------------PESKHL------SDVL---LDGFDKFEESINYRF 990
                                      PES  L       DVL   L G+D FE++INYRF
Sbjct: 1514 KKRNDQSSDLPAADLPVSCLYGYLKQPESPLLRSVPNAEDVLQQQLVGYDGFEKTINYRF 1573

Query: 991  KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            KD++YLLQA TH+SY  N++TDCYQRLEFLGDA+LDYLITRHLY+     SPG LTDLRS
Sbjct: 1574 KDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHTNLSPGALTDLRS 1633

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE----YYLMEGE 1106
            ALVNN IFASLAV+  FH +FK  +  + +VI  FV      +  L  +    Y  M+GE
Sbjct: 1634 ALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGMDSQLKYSEMDGE 1693

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
             +E+EDIEVPKALGD+FESVAGAIYLDSGMSL+ VWKVYY +MK +IE+ +  +P SP+R
Sbjct: 1694 QEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPISPVR 1753

Query: 1167 ELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            ELLE+EPE ARF  PEK  DG + RVTV V GKG +KGIGRNY IAK TAA+ AL+HLKS
Sbjct: 1754 ELLEMEPETARFGPPEKTIDG-KTRVTVNVVGKGQFKGIGRNYHIAKATAARFALRHLKS 1812



 Score =  373 bits (957), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/483 (42%), Positives = 287/483 (59%), Gaps = 14/483 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  AI I+NRYCA+LPSD+FT L     + E K D S  F  +++LPINSPL++ +TG  
Sbjct: 665  MTTAIQIINRYCAKLPSDVFTHLTASCKMQERKGDVSPEFQATLQLPINSPLRKPITGPW 724

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M  K  A    A++A  +L++  EL++ L P+ KE I L            + +T P +T
Sbjct: 725  MKRKKWATMAVAVKAATILHKAGELNDYLQPMGKESI-LKATDNAFNHLFADGQTRPGTT 783

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            K+R++Y K +A C   C P  + PCYLY+V M L  P+PD  N R R++H PE + Q   
Sbjct: 784  KKRRYYDKEVAKCLQGCLPQADQPCYLYSVDMSLASPLPDILNIRERRLHRPEETQQCFG 843

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            I+T+K IPKV  FP++TR GE+ VSI L    + LS   +     F   +F++VL+L K 
Sbjct: 844  IITSKQIPKVPGFPVYTRAGELAVSITLESNEIRLSGAQIRRAQSFHGCMFSEVLRLDKP 903

Query: 241  LMLFDPNCSENSYFIVPTVSDSEQ------IVIDWKFM--TLISEHHNDVIQDIPEKERE 292
             +  +P  S+ +Y IVP      +       VIDW F+    +S  H D    +P+  + 
Sbjct: 904  NLELNPEKSQANYLIVPLKEGPARGPSGGPSVIDWSFLEKVSLSSGHLDQPTQLPDYSQS 963

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
             F F      DAVV P YRN  +P  +++A+I+ ++   S FPS    Y+TF +YY  +Y
Sbjct: 964  QFEFSTDILADAVVTPIYRNIDQPQRYFMADILYDLPVTSPFPS--EKYETFVDYYFERY 1021

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             +QI N +QPL+DVD  S RLN LTPRY+N KG  L  ++ + +   + +L KKQ LVPE
Sbjct: 1022 DIQISNFQQPLVDVDCMSSRLNLLTPRYLNHKGKALPISTGQNK---KGNLQKKQYLVPE 1078

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC I+P PASLWRK+V LPSILYRLNALL+A+E+R  VA E G+G   L ++  +P  +F
Sbjct: 1079 LCYIYPIPASLWRKAVCLPSILYRLNALLIAEELRVQVAEEAGIGLKTLPQEYPYPNLSF 1138

Query: 473  GWK 475
            GW+
Sbjct: 1139 GWE 1141


>gi|405960420|gb|EKC26346.1| Endoribonuclease Dicer [Crassostrea gigas]
          Length = 1759

 Score =  462 bits (1189), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 261/585 (44%), Positives = 354/585 (60%), Gaps = 33/585 (5%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCA+LPSD FT L P  T+ EI  +   M+  ++ LPINSP KRSV G  
Sbjct: 645  VETAIAFVNRYCAKLPSDAFTHLTPKCTLQEISGEGGTMYRATLNLPINSPYKRSVQGEV 704

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI------E 114
            MPTK LA R  A++ C+ L+E  ELD+ L PV KE   + E  E       E       E
Sbjct: 705  MPTKNLAKRAVALKLCQCLHEAGELDDQLNPVGKEVFTVEEEQEEEDAADGEEGEDYSGE 764

Query: 115  TYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
              P +TKR+Q+Y KR+A+      PS    C LY + ++L+  I DEQN RGRKI  PE+
Sbjct: 765  GRPGTTKRKQYYFKRLAASLVQSHPSTEE-CLLYNISLQLSKAISDEQNTRGRKICAPED 823

Query: 175  SPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKV 234
            +P+G  ILT+K IP+V +FP++TR GEV  SI+++  N  +S E L     F  + FT V
Sbjct: 824  TPRGFGILTSKRIPQVPTFPVYTRSGEVTASIDVLSSNFSVSSEELRRLRDFHRFTFTNV 883

Query: 235  LKLKKYLMLFDPNCSENSYFIVPTVSDSE-QIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
            L+L+K  M F P+ S+  Y IVP   D +  +V+DW F+  + +  + V ++I + +RE 
Sbjct: 884  LRLEKDPMEFCPDESDLGYLIVPLNKDDDGNVVLDWTFIKEVEDSKSHVRRNIHDSKREQ 943

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            FVF + ++ DAVVMP YRN  +P +FYVAEI ++++P S FPS    Y+TF  YY+ KYG
Sbjct: 944  FVFSKEEYEDAVVMPSYRNVDQPQHFYVAEIRSDLNPSSPFPS-PELYKTFSAYYTTKYG 1002

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPEL 413
            L I NLEQPLLDVDHTS RLN LTPRY+N+KG+ L T+S ET++  RE+L +KQ+LVPEL
Sbjct: 1003 LTITNLEQPLLDVDHTSARLNLLTPRYMNQKGVALPTSSAETKKARRENLQQKQILVPEL 1062

Query: 414  CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFG 473
            C IH FPASLWRK+V LP+ILYRLN LL+ADEIR  +A   G+G + L+E   + P +FG
Sbjct: 1063 CEIHVFPASLWRKAVCLPTILYRLNYLLVADEIRMRIAEGTGIGLIKLEEGFRFQPLDFG 1122

Query: 474  WKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSG 533
            + +K+         +D +   V ++ VND   DD  VN   +  A        +  CDS 
Sbjct: 1123 FDLKE---------EDDDGSNVCNSTVNDESVDDKLVNGCDSPSA-------SQNGCDSD 1166

Query: 534  NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVEC 578
            N    EDE    K +S + K   +          + NE AA   C
Sbjct: 1167 NVISEEDECDTKKAESCDTKQNLKAA--------FQNEKAASDIC 1203



 Score =  366 bits (940), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/345 (57%), Positives = 245/345 (71%), Gaps = 23/345 (6%)

Query: 910  QSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPP------- 962
            Q V+PYNL T HSIPDKSIADCVE+LIG YL  CG + AL FM WLGLKV+P        
Sbjct: 1415 QVVIPYNLQTLHSIPDKSIADCVESLIGCYLTSCGKKAALKFMHWLGLKVLPQKKKGMVQ 1474

Query: 963  ---------------VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL 1007
                           V  P+   +   LL+G+D  E+ I Y F+DKSYLLQA THASY  
Sbjct: 1475 DTELLSLQCPDSPLLVHVPDHNSILHRLLEGYDTLEQKIGYEFRDKSYLLQAFTHASYHY 1534

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
            NT+TDCYQRLEFLGDAILDY+ITRHLYED   +SPG LTDLRSALVNN IFA+LAV+  F
Sbjct: 1535 NTVTDCYQRLEFLGDAILDYVITRHLYEDSCKYSPGVLTDLRSALVNNNIFAALAVKWDF 1594

Query: 1068 HHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            H +FK +SP L  VI++FV  Q E +  ++      EGE +E  ++EVPKALGD+FES+A
Sbjct: 1595 HKYFKAISPPLFGVIEKFVARQKEREDEIDLSDDEGEGEEEEHVELEVPKALGDIFESLA 1654

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAIYLDS MSLDTVW+VYY IMK +I++  +S+PKSP+RELLE+EPE A+F KPE+  +G
Sbjct: 1655 GAIYLDSKMSLDTVWRVYYRIMKPQIDKYLLSIPKSPVRELLEMEPETAKFEKPERTLEG 1714

Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPADV 1232
             ++RVTV V  KG + G+GRNY IAK  AAK AL+ +K+ +   +
Sbjct: 1715 -KIRVTVNVVTKGVFTGVGRNYRIAKSAAAKKALRSIKALQAGGL 1758


>gi|390332898|ref|XP_790894.2| PREDICTED: endoribonuclease Dicer-like [Strongylocentrotus
            purpuratus]
          Length = 1815

 Score =  461 bits (1187), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 263/540 (48%), Positives = 325/540 (60%), Gaps = 97/540 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK A+T +LYCTYP++ EGKLS LRSKQVSN+NL+ LG +K     M  +
Sbjct: 1274 ERLEMLGDSFLKQAVTAYLYCTYPHLDEGKLSFLRSKQVSNFNLYCLGDKKALAHKMQVS 1333

Query: 842  KFEPRDNWLPPGYFV-------PKYLETALIEAGFPASLWNCLSLP-------------- 880
             F+P  NWLPP   V       PK       +AGF    W+  ++               
Sbjct: 1334 LFDPSINWLPPCLLVKESSRPVPKEETETDPDAGFVIDTWDPSTVEGVDDFDDDDFDSDQ 1393

Query: 881  ----NLKELSPEKVLEIIKQKCVD-----------------------------LDCTVDM 907
                N  + S E++ E  K +C D                                T D+
Sbjct: 1394 CWEENSDDFSDEEIDET-KAECPDDFFAREEKDKEQWSFSVGDPDDVPGLTYTGAKTQDL 1452

Query: 908  NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP------ 961
                 +PY + TQHS+ DKSIADCVEALIG YL+ CG R ALL M+W+GL V+P      
Sbjct: 1453 GSVPQLPYEIHTQHSMSDKSIADCVEALIGCYLVSCGFRSALLIMAWMGLDVLPTIDGQS 1512

Query: 962  ---------------PVT-------NPESKHL------SDVL---LDGFDKFEESINYRF 990
                           PV+        PES  L       DVL   L G+D FE++INYRF
Sbjct: 1513 NKRNDQSSDLPAADLPVSCLYGYLKQPESPLLRSVPNAEDVLQHQLVGYDGFEKTINYRF 1572

Query: 991  KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            +D++YLLQA TH+SY  N++TDCYQRLEFLGDA+LDYLITRHLY+     SPG LTDLRS
Sbjct: 1573 RDRAYLLQAFTHSSYHRNSITDCYQRLEFLGDALLDYLITRHLYDHHTNLSPGALTDLRS 1632

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE----YYLMEGE 1106
            ALVNN IFASLAV+  FH +FK  +  + +VI  FV      +  L  +    Y  M+GE
Sbjct: 1633 ALVNNTIFASLAVKFNFHKYFKAYTANMFQVIDNFVTFVDAKNEALGMDSQLKYSEMDGE 1692

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
             +E+EDIEVPKALGD+FESVAGAIYLDSGMSL+ VWKVYY +MK +IE+ +  +P SP+R
Sbjct: 1693 QEESEDIEVPKALGDIFESVAGAIYLDSGMSLNAVWKVYYPMMKQQIEQYASDLPISPVR 1752

Query: 1167 ELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            ELLE+EPE ARF  PEK  DG + RVTV V GKG +KGIGRNY IAK TAA+ AL+HLKS
Sbjct: 1753 ELLEMEPETARFGPPEKTIDG-KTRVTVNVVGKGQFKGIGRNYHIAKATAARFALRHLKS 1811



 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 203/482 (42%), Positives = 286/482 (59%), Gaps = 13/482 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M  AI I+NRYCA+LPSD+FT L     + E K D S  F  +++LPINSP+++ +TG  
Sbjct: 664  MTTAIQIINRYCAKLPSDVFTHLTASCKMKERKGDVSPEFQATLQLPINSPIRKPITGPW 723

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M  K  A    A++A  +L++  EL++ L P+ KE I L            + +T P +T
Sbjct: 724  MKRKKWATMAVAVKAATILHKAGELNDYLQPMGKESI-LKATDNAFNHLFADGQTRPGTT 782

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            K+RQ+Y K +A C   C P  + PCYLY+V M L  P+PD  N R R++H PE + Q   
Sbjct: 783  KKRQYYDKEVAKCLQECLPQADQPCYLYSVDMSLASPLPDILNIRERRLHRPEETQQCFG 842

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            I+T+K IPKV  FP++TR GE+ VSI L    + LS   +     F   +F++VL+L K 
Sbjct: 843  IITSKQIPKVPGFPVYTRAGELAVSIMLESDEIRLSSSQIRRAQSFHGCMFSEVLRLDKP 902

Query: 241  LMLFDPNCSENSYFIV-----PTVSDSEQIVIDWKFM--TLISEHHNDVIQDIPEKEREN 293
             +  +P  S+ +Y IV     P        VIDW F+    +S  H D    +P+  +  
Sbjct: 903  NLELNPEKSQANYLIVPLKEGPAGPSGGPSVIDWSFLEKVSLSSGHLDQPTQLPDYSQSQ 962

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F F      DAVV P YRN  +P  +++A+I+ ++   S FPS    Y+TF +YY  +Y 
Sbjct: 963  FEFSTDILADAVVTPIYRNIDQPQRYFMADILYDLPVTSPFPS--EKYETFVDYYFERYD 1020

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPEL 413
            +QI N +QPL+DVD  S RLN LTPRY+N KG  L  ++ + +   + +L KKQ LVPEL
Sbjct: 1021 IQISNFQQPLVDVDCMSSRLNLLTPRYLNHKGKALPISTGQNK---KGNLQKKQYLVPEL 1077

Query: 414  CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFG 473
            C I+P PASLWRK+V LPSILYRLNALL+A+E+R  VA E G+G   L ++  +P  +FG
Sbjct: 1078 CYIYPIPASLWRKAVCLPSILYRLNALLIAEELRVQVAEEAGIGLKTLPQEYPYPNLSFG 1137

Query: 474  WK 475
            W+
Sbjct: 1138 WE 1139


>gi|312376926|gb|EFR23879.1| hypothetical protein AND_11908 [Anopheles darlingi]
          Length = 994

 Score =  459 bits (1181), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 235/391 (60%), Positives = 269/391 (68%), Gaps = 78/391 (19%)

Query: 913  VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV--------IPPVT 964
            +PYNLVTQHSIPDKS+ADCVEALIGAYLIECGPRGALLFM+WLG++V        +P   
Sbjct: 593  IPYNLVTQHSIPDKSVADCVEALIGAYLIECGPRGALLFMAWLGIRVLPIRSNNGVPKAI 652

Query: 965  NP----------------------------------------ESKHLS----DVLLDGFD 980
            N                                            H +    + LL+GF+
Sbjct: 653  NTGNTQELVQYGRGTVDITEYGHWVAPPSPMVRANITFGGLEAGAHATARELNRLLEGFE 712

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
             FE S+ Y F+D+SYLLQAMTHASY  N LTDCYQRLEFLGDAILDYLITRHLYED R H
Sbjct: 713  VFERSLGYHFQDRSYLLQAMTHASYSPNRLTDCYQRLEFLGDAILDYLITRHLYEDRRQH 772

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
            SPG LTDLRSALVNN IFA+LAVR GFH +F HLSPGL EVI RFV++Q EN   + +E 
Sbjct: 773  SPGALTDLRSALVNNTIFAALAVRHGFHRYFLHLSPGLQEVIDRFVRIQQENGHRITEEE 832

Query: 1101 YLMEGECD--------------------------EAEDIEVPKALGDLFESVAGAIYLDS 1134
            Y +  E D                          EAED+EVPKALGD+FES+AGAI+LDS
Sbjct: 833  YYLPDEDDDMLAADGGFGGGFGEIEGGQALMGSGEAEDVEVPKALGDVFESIAGAIFLDS 892

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
            GMSL+TVWKVY ++M  EIE+ S SVPKSPIRELLE+EPE A+F KPEKLADGRRVRVTV
Sbjct: 893  GMSLNTVWKVYRKMMGPEIEKFSSSVPKSPIRELLEMEPETAKFGKPEKLADGRRVRVTV 952

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            EVFGKG+++GIGRNY IAKCTAAKCAL+ LK
Sbjct: 953  EVFGKGTFRGIGRNYRIAKCTAAKCALRQLK 983



 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 88/157 (56%), Positives = 109/157 (69%), Gaps = 18/157 (11%)

Query: 760 STPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLY 801
           +T   F+FD QPDLE+H GPSP                  +RLETIGDSFLKYAIT +LY
Sbjct: 356 TTSITFNFDEQPDLEHHPGPSPAIILQALTMSNANDGINLERLETIGDSFLKYAITTYLY 415

Query: 802 CTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLE 861
           C Y NVHEGKLSHLRSKQVSN NL++LG++K  G+ MIA KFEP DNWLPP Y+VPK LE
Sbjct: 416 CRYDNVHEGKLSHLRSKQVSNLNLYRLGRRKRLGDCMIAAKFEPHDNWLPPCYYVPKELE 475

Query: 862 TALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
             LI+A  PA  WN   LP++K LS  ++ +++K++ 
Sbjct: 476 QTLIDAKIPACHWNLADLPDIKRLSCAEICQLVKERA 512


>gi|324500060|gb|ADY40039.1| Endoribonuclease dcr-1 [Ascaris suum]
 gi|333440972|gb|AEF32761.1| DCR-1 [Ascaris suum]
          Length = 1970

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 247/497 (49%), Positives = 325/497 (65%), Gaps = 51/497 (10%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLET+GDSFLKYA+T +L+   P  HEGKLS  RSK+VSN NL++LGK++     
Sbjct: 1462 GINLERLETVGDSFLKYAVTDYLFHMNPEQHEGKLSFARSKEVSNCNLYRLGKKRNLPSL 1521

Query: 838  MIATKFEPRDNWLPPGY-------------------FVPKYLE--TALIEAGFPASL--- 873
            M+  KF+P D+WLPP Y                    + K LE   A+ +  F   +   
Sbjct: 1522 MVGAKFDPNDSWLPPCYAPTSDFKAPNSSDAEERDKIMEKVLEGSAAIEQTNFQVKVRTG 1581

Query: 874  WN-CLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCV 932
            W+   S   ++++S + V  I   + V     V   + S +PYN++TQ  + DKSIAD V
Sbjct: 1582 WDEADSSSEVRQIS-DGVETINFPRGVASTWDVAEEI-SPLPYNMLTQQYLGDKSIADAV 1639

Query: 933  EALIGAYLIECGPRGALLFMSWLGLKVI-------PP----VTNPESKHLSDVLLD---- 977
            EALIGA+L+E GP   L FM W+GLKV+       PP    +  P+   L+   L+    
Sbjct: 1640 EALIGAHLLELGPTATLKFMKWVGLKVLTEPVTLDPPLLRFIDTPQEPELAICKLNEFWV 1699

Query: 978  --GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
               F K E+SI YRFKD++YLLQA THASY+ N +T CYQRLEFLGDA+LDY+ITR L++
Sbjct: 1700 QFQFSKLEDSICYRFKDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQ 1759

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
              R +SPG LTDLRSALVNN IFASLAV+  FH  F  + PGLH +I++FV++ AE +F+
Sbjct: 1760 HPRQYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFVAMCPGLHHMIEKFVRLCAEKNFS 1819

Query: 1096 ---LNQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI 1148
                N E Y++    E +  E EDIEVPKA+GD+FESVAGAIYLDSG SLD VW+V+Y +
Sbjct: 1820 GANFNAEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDVVWRVFYNL 1879

Query: 1149 MKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            MK  IE    + PKSPIRELLELEPE ARFSK E++ +  +VRVTV++ GK  + G+GR+
Sbjct: 1880 MKETIEECCNNPPKSPIRELLELEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRS 1939

Query: 1209 YCIAKCTAAKCALKHLK 1225
            Y IAKCTAAK AL++L+
Sbjct: 1940 YRIAKCTAAKRALRYLR 1956



 Score =  316 bits (810), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 191/487 (39%), Positives = 273/487 (56%), Gaps = 23/487 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT-GH 59
            M +AI +VNRYCA+LPSDIFTRL P   I  +  + SI++   + LPINSPLK  +    
Sbjct: 588  MSSAIALVNRYCAKLPSDIFTRLVPQNRIIPVSVNGSILYKAELLLPINSPLKNGIMLTT 647

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
             M TK LA    A+E CR L+E KEL++ L+PV K+ I L    +      P +     S
Sbjct: 648  PMETKKLAQMAVALETCRRLHEHKELNDHLLPVGKDTITLTALDDDPDEFIPNMNYKVGS 707

Query: 120  TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
             +R+Q Y KRMA    +  P V+T C +Y ++M L   +    N + RKI  P ++    
Sbjct: 708  ARRKQLYDKRMAKGLNDALPDVDTTCLIYVMEMDLIKAVTGAANPKNRKIVNPIDTEFCF 767

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
              L+ K IP V SFP+F R G ++ +I L    + +  E L     F  Y+F  VL+L K
Sbjct: 768  GFLSKKKIPNVPSFPVFLRQGRMQANIFLAKSRLQVDAEMLELLKAFHHYIFDSVLRLVK 827

Query: 240  YLMLFDPNCSENSYFIVPTVSDSEQIV--IDWKFMTLISEHHNDVIQDIP----EKEREN 293
              + F P  +  S  IVP   +  ++   +D+K       +    I ++P    E+ER  
Sbjct: 828  GGLAFVPEKAPVSILIVPLRRERNELTNQVDFKLDYTYVRNVVSSIGEMPRVPSEEERRL 887

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F FD +KF+DAVVMPWYR++  P+++YVAEI+ + +P S FP     +  F +Y+  KY 
Sbjct: 888  FKFDVTKFQDAVVMPWYRDKEHPSFYYVAEII-DANPGSKFPD--EKFANFNDYFIQKYN 944

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPEL 413
            ++I + +QPLLDVD+TS RLN L PR+ +R     + T     R+  E+  + Q+LVPEL
Sbjct: 945  IEIYDQQQPLLDVDYTSSRLNLLMPRHTSR-----SRTRVMEERKPGETSSQGQILVPEL 999

Query: 414  CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVE----WPP 469
              +HP  ASLW    +LP++LYR+N LLLADE+R  + SE  LG   LD KV     WPP
Sbjct: 1000 VDVHPIAASLWNVIAALPTLLYRINCLLLADELRETIVSE-ALG---LDSKVPEGYVWPP 1055

Query: 470  FNFGWKM 476
             ++   M
Sbjct: 1056 LDYATPM 1062


>gi|357619534|gb|EHJ72068.1| putative dicer 1 [Danaus plexippus]
          Length = 754

 Score =  428 bits (1100), Expect = e-116,   Method: Compositional matrix adjust.
 Identities = 243/510 (47%), Positives = 320/510 (62%), Gaps = 62/510 (12%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIF 799
            N     +F FD QPDLE H GPSP                  +RLETIGDSFLK+AIT +
Sbjct: 268  NGINGKEFDFDSQPDLEGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKFAITAY 327

Query: 800  LYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKY 859
            LYC  P VHEGKLSH+RS         K G  K  GE+      EP+ +    G F+P  
Sbjct: 328  LYCALPAVHEGKLSHMRS---------KQGDVKD-GEN------EPQVD--STGCFIPYN 369

Query: 860  LETALIEAGFP-ASLWNCLSL---PNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPY 915
            L   + +   P  S+ +C+       L E  P   L  +    + +  T  + +    P+
Sbjct: 370  L---ITQHSIPDKSIADCVEALIGAYLLECGPRGALLFMSWLGITVLPTHTVPLPENHPF 426

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL---------LFMSWLGLKVIPP---- 962
             +  ++   DK   D  +     +  +  P G+L            +  G    PP    
Sbjct: 427  VVKMRNRQDDKE-TDISDEEDDKWCWDGRPPGSLKPHKDSEGRWVQTIYGALKSPPSPLL 485

Query: 963  --VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
              + +PE +   + +L G+D  E ++ YRF+D+S LL A+THAS   NTLTDCYQRLEFL
Sbjct: 486  RYIEDPEGE--LERMLSGYDALENTLQYRFRDRSLLLTALTHASCHNNTLTDCYQRLEFL 543

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDAILDYLITRHLYED R HSPG LTDLRSALVNN IFA+LA R GFH +F+H+SPGL+E
Sbjct: 544  GDAILDYLITRHLYEDPRRHSPGALTDLRSALVNNTIFATLAARHGFHKYFRHMSPGLNE 603

Query: 1081 VIQRFVKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
            V+ ++VK+Q EN  ++++E+YL+ E E ++AED+EVPKALGDLFESVAGAI+LDSGMSL 
Sbjct: 604  VLTKYVKIQEENGHSISEEHYLIQEDEMEQAEDVEVPKALGDLFESVAGAIFLDSGMSLA 663

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGK 1199
             VW+    ++++E++  S + PKSP+RELLE EP+ A+F KPE+LADGRRVRV VEVFG+
Sbjct: 664  AVWRAVGGLLRAELDAFSAAAPKSPVRELLEAEPDTAKFGKPERLADGRRVRVCVEVFGR 723

Query: 1200 GSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            GS+KG+GRNY IAK TAA+CAL+HL+S +P
Sbjct: 724  GSFKGVGRNYRIAKGTAARCALRHLRSVRP 753


>gi|170591572|ref|XP_001900544.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
 gi|158592156|gb|EDP30758.1| Type III restriction enzyme, res subunit family protein [Brugia
            malayi]
          Length = 1856

 Score =  416 bits (1069), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 238/499 (47%), Positives = 320/499 (64%), Gaps = 52/499 (10%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLET+GDSFLKYA+T +L+ T P  HEGKLS  RSK+VSN NL++LG++      
Sbjct: 1352 GINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNLYRLGRKHNLPSL 1411

Query: 838  MIATKFEPRDNWLPPGY-------------------FVPKYLETALIEA----GFPASLW 874
            +I +KF+P D WLPP Y                   F+   LE   +E       P    
Sbjct: 1412 IIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKAVEGQETVKIPTGWD 1471

Query: 875  NCLSLPNLKELSPE-KVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVE 933
                   ++ ++   + +E  K    ++  + D    + +PYNL+TQ S+ DKSIAD VE
Sbjct: 1472 EADRNGQVRRIANGIETIEFPK----NMTTSWDGEEITPLPYNLLTQQSLGDKSIADAVE 1527

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVI-------PPVT-------NPES--KHLSDVLLD 977
            +LIGA+L+E GP   L FM WLGLKV+       PP+         P+   + L+D+ + 
Sbjct: 1528 SLIGAHLLELGPTATLKFMKWLGLKVLTZPVQMEPPLLRFIDTTDQPDKSLRKLNDLWIQ 1587

Query: 978  -GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
              F K E+ I YRF D++YLLQA THASY+ N +T CYQRLEFLGDA+LDY+ITR L++ 
Sbjct: 1588 FQFSKLEDCIGYRFHDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1647

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT- 1095
               +SPG LTDLRSALVNN IFASLAV+  FH  F  + P LH +I++FV + AE + + 
Sbjct: 1648 SAHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1707

Query: 1096 --LNQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
               N+E Y++    E +  E EDIEVPKA+GD+FESVAGAIYLDSG SL+TVW+V+Y +M
Sbjct: 1708 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNTVWRVFYNLM 1767

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            K  I     + P+SPIRELLE+EPE ARFSK E++ +  +VRVTV++ GK  + G+GR+Y
Sbjct: 1768 KETINECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSY 1827

Query: 1210 CIAKCTAAKCALKHLKSAK 1228
             IAKCTAAK AL++L+S K
Sbjct: 1828 RIAKCTAAKRALRYLRSLK 1846



 Score =  272 bits (696), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 187/552 (33%), Positives = 284/552 (51%), Gaps = 65/552 (11%)

Query: 36   DSIMFTCSIRLPINSPLKRSVTGHK-MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK 94
            D +M+   + LPINSP+K ++   K + +K LA    A+EACR L++ KEL++ L+PV K
Sbjct: 525  DRVMYRAELLLPINSPIKETIKLKKPLESKKLAQMAVALEACRRLHKRKELNDYLLPVGK 584

Query: 95   EFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKL 154
            + I L    E      P +     S +RRQ Y KRMA    N  P     CY+Y ++M L
Sbjct: 585  DTIMLTALDEDPDEFIPNMSYKVGSARRRQLYDKRMAKALHNAIPRAGEECYIYVMEMDL 644

Query: 155  TCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV 214
               +    N + R+I  P ++      L+ K IPKV SFP+F R G ++ +I L+   ++
Sbjct: 645  IKAVTGAANPKNRRIINPLDTEFCFGFLSNKKIPKVPSFPLFLRQGRMQANIFLVKSRLL 704

Query: 215  LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV--SDSEQIVIDWKFM 272
            +  + L     F  YLF  VL+L K  ++F P+ +  +  IVP     +SE   +D+K  
Sbjct: 705  VDTQMLELLKAFHHYLFDNVLRLVKGGLVFVPDKAPVNVLIVPLRRERNSETSEVDFKLD 764

Query: 273  TLISEHHNDVIQDIP----EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNV 328
                 +    I ++P    E ER  F FD +KF+DA+VMPWYR++  P+++YVAEI+ + 
Sbjct: 765  YAYVRNVVSSIDELPRIPTEAERLAFKFDAAKFQDAIVMPWYRDRDHPSFYYVAEII-DA 823

Query: 329  HPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINL 388
             P S FP   + + TF +Y+  KY + I + +QPLLDVD+TS RLN L PR+ +R     
Sbjct: 824  KPSSKFPD--DKFVTFNDYFIQKYNIIIYDQQQPLLDVDYTSSRLNLLMPRHWSR----- 876

Query: 389  ATTSEETRREIRESLG--KKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEI 446
             + S  T  +  ES G  + Q+LVPEL  +HP  ASLW    +LP++LYR+N+LLLADE+
Sbjct: 877  -SKSRVTEEKSSESGGISQGQILVPELVDVHPIAASLWNVIAALPTLLYRINSLLLADEL 935

Query: 447  RTAVASE-IGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKE 505
            R  V  E          + V W P ++   M  L+ K                       
Sbjct: 936  RELVMREAFSNPNYNTSDDVYWLPLDYPTPMDDLEMK----------------------- 972

Query: 506  DDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEI 565
               +V +IC          KK+ V     EQ++++ ++++   S    T+        EI
Sbjct: 973  ---SVQKICDL--------KKKHV-----EQKSQENKEMEAKDSGAEMTD-------FEI 1009

Query: 566  GTWSNEMAAGVE 577
            G W  E+A G++
Sbjct: 1010 GVWDPELAKGLD 1021


>gi|402595090|gb|EJW89016.1| type III restriction enzyme [Wuchereria bancrofti]
          Length = 1410

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 236/499 (47%), Positives = 316/499 (63%), Gaps = 52/499 (10%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +RLET+GDSFLKYA+T +L+ T P  HEGKLS  RSK+VSN NL++LG++      
Sbjct: 906  GISLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNLYRLGRKHNLPSL 965

Query: 838  MIATKFEPRDNWLPPGY-------------------FVPKYLETALIEA----GFPASLW 874
            +I +KF+P D WLPP Y                   F+   LE   +E       P    
Sbjct: 966  IIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKAVEGQETVKIPTGWD 1025

Query: 875  NCLSLPNLKELSPE-KVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVE 933
                   ++ ++   + +E  K    ++  + D    + +PYNL+TQ S+ DKSIAD VE
Sbjct: 1026 EADRNGQVRRIANGIETIEFPK----NMTTSWDGEEITPLPYNLLTQQSLGDKSIADAVE 1081

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPES----------------KHLSDVLLD 977
            +LIGA+L+E GP   L FM WLGLKV+      E                 + L+D+ + 
Sbjct: 1082 SLIGAHLLELGPTATLKFMKWLGLKVLTEPVQMEQPLLRFIDTTDQPDKSLRKLNDLWIQ 1141

Query: 978  -GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
              F K E+ I YRF D++YLLQA THASY+ N +T CYQRLEFLGDA+LDY+ITR L++ 
Sbjct: 1142 FQFSKLEDCIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQH 1201

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT- 1095
               +SPG LTDLRSALVNN IFASLAV+  FH  F  + P LH +I++FV + AE + + 
Sbjct: 1202 SSHYSPGVLTDLRSALVNNTIFASLAVKYNFHKHFIAMCPRLHHMIEKFVCLCAEKNLSS 1261

Query: 1096 --LNQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
               N+E Y++    E +  E EDIEVPKA+GD+FESVAGAIYLDSG SL+ VW+V+Y +M
Sbjct: 1262 ANFNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLNIVWRVFYNLM 1321

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            K  I+    + P+SPIRELLE+EPE ARFSK E++ +  +VRVTV++ GK  + G+GR+Y
Sbjct: 1322 KETIDECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSY 1381

Query: 1210 CIAKCTAAKCALKHLKSAK 1228
             IAKCTAAK AL++L+S K
Sbjct: 1382 RIAKCTAAKRALRYLRSLK 1400



 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 198/566 (34%), Positives = 293/566 (51%), Gaps = 29/566 (5%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           +  AI +VNRYCA+LPSDIFTRL P  TI      D +M+   + LPINSP+K ++   K
Sbjct: 42  LTTAISLVNRYCAKLPSDIFTRLVPQNTIVPETIGDRVMYRAELLLPINSPIKETIKLKK 101

Query: 61  -MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
            + +K LA    A+EACR L++ KEL++ L+PV K+ I L    E      P +     S
Sbjct: 102 PLESKKLAQMAVALEACRRLHKRKELNDYLLPVGKDTIMLTALDEDPDEFIPNMSYKVGS 161

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            +RRQ Y KRMA    N  P     CY+Y ++M L   +    N + R+I  P ++    
Sbjct: 162 ARRRQLYDKRMAKALHNAIPHAGEECYIYVMEMDLIKAVSGAANPKNRRIINPLDTEFCF 221

Query: 180 AILTTKYI------PKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
             L+ K         KV SFP+F R G ++ +I L+   +++  + L     F  YLF  
Sbjct: 222 GFLSNKKYRRYPKRQKVPSFPLFLRQGRMQANIFLVKSRLLVDTQMLELLKAFHHYLFDN 281

Query: 234 VLKLKKYLMLFDPNCSENSYFIVPTV--SDSEQIVIDWKFMTLISEHHNDVIQDIP---- 287
           VL+L K  ++F P+ +  +  IVP     +SE   +D+K       +    I ++P    
Sbjct: 282 VLRLVKGGLVFVPDKAPVNVLIVPLRRERNSETGEVDFKLDYAYVRNVVSSIDELPRIPT 341

Query: 288 EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY 347
           E ER  F FD +KF+DA+VMPWYR++  P+++YVAEI+ +  P S FP   + + TF +Y
Sbjct: 342 EAERLAFKFDAAKFQDAIVMPWYRDRDHPSFYYVAEII-DAKPSSKFPD--DKFITFNDY 398

Query: 348 YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
           +  KY + I + EQPLLDVD+TS RLN L PR+ +R      +   E R      + + Q
Sbjct: 399 FIQKYNIIIYDQEQPLLDVDYTSSRLNLLMPRHWSRS----KSRVTEERSSESGGISQGQ 454

Query: 408 LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE-IGLGKVILDEKVE 466
           +LVPEL  +HP  ASLW    +LP++LYR+N+LLLADE+R  V  E          + V 
Sbjct: 455 ILVPELVDVHPIAASLWNVIAALPTLLYRINSLLLADELRELVMREAFSNPNYNTSDDVY 514

Query: 467 WPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKK 526
           W P ++   M  L+ K      D     V+     + K+  + + +    +   E+    
Sbjct: 515 WLPLDYPTPMDDLEMKSVQKICDLKKKHVEQKSHMEAKDSGAGMTDFEIGVWDPELAKGL 574

Query: 527 ETVCDSGNEQENEDEEKLDKIKSDEN 552
           E  C         + EK D+IK  E+
Sbjct: 575 EDFC--------LNREKHDEIKGFED 592


>gi|312069719|ref|XP_003137813.1| hypothetical protein LOAG_02227 [Loa loa]
 gi|307767024|gb|EFO26258.1| hypothetical protein LOAG_02227 [Loa loa]
          Length = 1928

 Score =  414 bits (1065), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 237/497 (47%), Positives = 319/497 (64%), Gaps = 48/497 (9%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLET+GDSFLKYA+T +L+ T P  HEGKLS  RSK+VSN NL++LG++      
Sbjct: 1424 GINLERLETVGDSFLKYAVTDYLFHTNPEQHEGKLSFARSKEVSNCNLYRLGRKHNLPSL 1483

Query: 838  MIATKFEPRDNWLPPGY-------------------FVPKYLETALIEAGFPASL---WN 875
            +I +KF+P D WLPP Y                   F+   LE   +E   P  +   W+
Sbjct: 1484 IIGSKFDPNDGWLPPCYAPTSDFKAPNTLDAEERDKFIENVLEGKTVERQEPVRVPTGWD 1543

Query: 876  CLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEAL 935
                 +      + +  I   K  ++  + D    + +PYNL+TQ S+ DKSIAD VE+L
Sbjct: 1544 EADRNSQVRRIADGIETIEFPK--NMITSWDGEEITPLPYNLLTQQSLGDKSIADAVESL 1601

Query: 936  IGAYLIECGPRGALLFMSWLGLKVI-------PPVT-------NPES--KHLSDVLLD-G 978
            IGA+L+E GP   L FM WLGLKV+       PP+         P+   + L+D+ +   
Sbjct: 1602 IGAHLLELGPTATLRFMKWLGLKVLTEPVQVEPPLLRFIDTTEQPDKSLRKLNDLWVQFQ 1661

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            F K E+ I YRF D++YLLQA THASY+ N +T CYQRLEFLGDA+LDY+ITR L++   
Sbjct: 1662 FSKLEDFIGYRFNDRAYLLQAFTHASYYKNRITGCYQRLEFLGDAVLDYVITRFLFQHSS 1721

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT--- 1095
             +SPG LTDLRSALVNN IFASLA++  FH  F  + P LH +I++FV +  E + +   
Sbjct: 1722 HYSPGVLTDLRSALVNNTIFASLAIKHNFHKHFIAMCPRLHHMIEKFVCLCTEKNLSSAN 1781

Query: 1096 LNQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151
             N+E Y++    E +  E EDIEVPKA+GD+FESVAGAIYLDSG SLD VW+V+Y +MK 
Sbjct: 1782 FNEEMYMVTTEEEIDEGEEEDIEVPKAMGDIFESVAGAIYLDSGRSLDIVWRVFYNLMKE 1841

Query: 1152 EIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCI 1211
             I+    + P+SPIRELLE+EPE ARFSK E++ +  +VRVTV++ GK  + G+GR+Y I
Sbjct: 1842 TIDECCSNPPRSPIRELLEMEPERARFSKLERILETGKVRVTVDIQGKCRFTGMGRSYRI 1901

Query: 1212 AKCTAAKCALKHLKSAK 1228
            AKCTAAK AL++L+S K
Sbjct: 1902 AKCTAAKRALRYLRSLK 1918



 Score =  311 bits (796), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 200/555 (36%), Positives = 298/555 (53%), Gaps = 17/555 (3%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +AI +VNRYCA+LPSDIFTRL P  TI      D +M+   + LPINSP+K ++   K
Sbjct: 564  LTSAIGLVNRYCAKLPSDIFTRLVPQNTIVPETVGDHVMYRAELLLPINSPIKETIKLKK 623

Query: 61   -MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
             + +K LA    A+EACR L++ KEL++ L+PV K+ I L    E      P +     S
Sbjct: 624  PLGSKKLAQMAVALEACRRLHKRKELNDYLLPVGKDTIMLTALDEDPDEFIPNMNYKVGS 683

Query: 120  TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
             +RRQ Y KRMA    N  P V+  CY+Y ++M L   +    N + R+I  P ++    
Sbjct: 684  ARRRQLYDKRMAKALHNAIPHVDEECYIYVMEMDLVKAVTGAANPKNRRIINPLDTEFCF 743

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
              L+ K IPKV SFP+F R G ++ +I  +   +++  + L     F  YLF  VL+L K
Sbjct: 744  GFLSNKKIPKVPSFPLFLRQGRMQANIFPVKSRLLVDAQMLELLKAFHHYLFDNVLRLVK 803

Query: 240  YLMLFDPNCSENSYFIVPTVSDSEQIV--IDWKFMTLISEHHNDVIQDIP----EKEREN 293
              ++F P+ +  +  +VP   +       +D+K       +    I ++P    E ER  
Sbjct: 804  GGLVFVPDKAPVNVLVVPLRRERNNKTNEVDFKLDYAYVRNVVSSIDELPRIPTEVERRA 863

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F FD + F+DAVVMPWYR++  P+++YVAEI+ +  P S FP   + + TF +Y+  KYG
Sbjct: 864  FKFDAANFQDAVVMPWYRDRDHPSFYYVAEII-DAKPSSKFPD--DKFATFNDYFIQKYG 920

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPEL 413
            + I + EQPLLDVD+TS RLN L PR+ +R   +   T+EE   E    + + Q+LVPEL
Sbjct: 921  IVIYDQEQPLLDVDYTSSRLNLLMPRHWSR---SRNRTTEERGSE-SGGMSQGQILVPEL 976

Query: 414  CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE-IGLGKVILDEKVEWPPFNF 472
              +HP  ASLW    +LP++LYR+N+LLLADE+R  +  E          + V W P ++
Sbjct: 977  VDVHPIAASLWNVIAALPTLLYRINSLLLADELRELIMREAFSNPDYRTSDDVYWMPLDY 1036

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDT-EVNDTKEDDSAVNEICTEIAKVEIVDKKETVC- 530
               M  L+ K      D    + + + E ND K+  S + +    +   E+    E  C 
Sbjct: 1037 PTPMDDLEMKPVQRICDLKKQVEEKSLENNDAKDSGSGMADFEIGVWDPELAKGLEGFCP 1096

Query: 531  DSGNEQENEDEEKLD 545
            + G   E    E +D
Sbjct: 1097 NRGRRDEIRGFEDID 1111


>gi|268576156|ref|XP_002643058.1| C. briggsae CBR-DCR-1 protein [Caenorhabditis briggsae]
          Length = 1863

 Score =  410 bits (1055), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 240/488 (49%), Positives = 306/488 (62%), Gaps = 43/488 (8%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +R ETIGDSFLK+A T +LY T    HEGKLS  RSK+VSN NL++LGK+    + 
Sbjct: 1363 GMSLERFETIGDSFLKFATTDYLYHTLQEQHEGKLSWARSKEVSNCNLYRLGKKLGIPQL 1422

Query: 838  MIATKFEPRDNWLPPGYFVP----KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
            ++A KF+  D+WLPP Y VP    K   T+  E      +   LS   ++E    K    
Sbjct: 1423 IVANKFDAHDSWLPPCY-VPTCDFKAPNTSDAEEK-DKEMERILSGQTIEEKPENKTGWD 1480

Query: 894  IKQ----KCVDLDCTVDMNVQSVV--------PYNLVTQHSIPDKSIADCVEALIGAYLI 941
            + Q    K VD   T+    Q+ +        PYNL+TQ +I DK+IAD +EALIG +L+
Sbjct: 1481 LGQDEAKKTVDGIETITFQKQTRILNEDITPLPYNLLTQQNISDKAIADAMEALIGVHLL 1540

Query: 942  ECGPRGALLFMSWLGLKVI---------PP----VTNPESKHLSDVLLDG------FDKF 982
              GP   L  M+W+GLKVI         PP    +  P +   S   LD       F + 
Sbjct: 1541 TLGPNPTLKVMNWMGLKVIQKDQATDVQPPLLRFIDTPINPDASTKALDNLWQQFQFAQL 1600

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            EE I YRFKD++YL+QA THASY  N +T CYQRLEFLGDA+LDY+ITR+L+ED R +SP
Sbjct: 1601 EEKIGYRFKDRAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYSP 1660

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF--TLNQEY 1100
            G LTDLRSALVNN IFASLAV+  F   F  + PGLH +I++FVK+  +  F    N E 
Sbjct: 1661 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCGDRSFDTNFNTEM 1720

Query: 1101 YLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
            Y++    E +    ED+EVPKALGD+FESVAGAIYLDSG +LDT W+V Y +MK  IE  
Sbjct: 1721 YMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVIYHLMKGTIETC 1780

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
              + P+SPIREL+ELE   ARFSK E++ +  +VRVTV+V     + G+GRNY IAK TA
Sbjct: 1781 CANPPRSPIRELMELEGTKARFSKMERILESGKVRVTVDVGNNMRFTGMGRNYRIAKATA 1840

Query: 1217 AKCALKHL 1224
            AK ALK+L
Sbjct: 1841 AKRALKYL 1848



 Score =  264 bits (674), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/488 (35%), Positives = 261/488 (53%), Gaps = 28/488 (5%)

Query: 8   VNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT-GHKMPTKLL 66
           V  YC++LPSDIFTRL P   I  +++     +   + LPINSP+K ++     MP K +
Sbjct: 511 VTAYCSKLPSDIFTRLVPHSRIIPVEDRGVTKYCAELLLPINSPIKHAIILKDAMPNKKI 570

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFI-NLYENTEPVVPK-TPEIETYPDSTKRRQ 124
           A    A+EACR L+   ELD++L+P  +E I  L E+ +    +  P +     S+KR+Q
Sbjct: 571 AQMAVALEACRQLHLKGELDDNLLPKGRESIAKLLEHIDDEPDEYAPGMTAKVGSSKRKQ 630

Query: 125 FYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC---PIPDEQNKRGRKIHPPENSPQGLAI 181
            Y K++A          +  CY+YA   +L C   P P    KR RK   P         
Sbjct: 631 LYDKKIARALNESLIEPDKDCYIYA--FELECFREPEPVANPKR-RKFQNPTEYEYCFGF 687

Query: 182 LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL-KKY 240
           L+TK IPK+  FP+F R G +EV + +  +   ++EE L     F +YLFT+VL++ K  
Sbjct: 688 LSTKDIPKIPPFPLFLRQGNMEVRLTVAPEKTRVTEEQLEQIQYFHNYLFTQVLQMCKTG 747

Query: 241 LMLFDP--NCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDE 298
            ++FD   N   N+  +    S      I+ K++T +  +  ++ +   E  R+ F F+ 
Sbjct: 748 NLVFDATVNAPLNTLIVPLNKSKEGTYSINMKYVTEVVANMENMPRVPTEDVRKGFKFNA 807

Query: 299 SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQN 358
             ++DA+VMPWYRN  +P ++YVA+I+T++ P S FP   + ++TF EY+  KY L+I +
Sbjct: 808 DAYKDAIVMPWYRNVEQPVFYYVADILTDLRPSSQFPD--SNFRTFNEYFIKKYHLEIYD 865

Query: 359 LEQPLLDVDHTSCRLNFL------TPRYVNRKGINLATTSEETRREIRESLG-------K 405
            +Q LLDVD TS RLN L       PR       +  T++  T  E RES         +
Sbjct: 866 QDQSLLDVDFTSNRLNLLLPRSQPQPRRARSNSASSTTSNPVTPSESRESQASGGHHSSQ 925

Query: 406 KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE-IGLGKVILDEK 464
           +Q+LVPEL  +HP  A+LW    +LPSI YRLN LLL+DE+R  +  +  G+    L   
Sbjct: 926 RQILVPELMDVHPISATLWNVISALPSIFYRLNQLLLSDELREIILQKAFGIQTSRLQNS 985

Query: 465 VEWPPFNF 472
           +EW    +
Sbjct: 986 LEWSSLAY 993


>gi|256087296|ref|XP_002579808.1| dicer-1 [Schistosoma mansoni]
          Length = 2174

 Score =  405 bits (1042), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/507 (45%), Positives = 300/507 (59%), Gaps = 69/507 (13%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+ETIGDSFLK+ +T+ LY TYP  HEGKLSHLRS+ V N NL++LGK K     MI  
Sbjct: 1653 ERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGC 1712

Query: 842  KFEPRDNWLPPGYFV--PKYLETALI---EAGFPASLWNCLSL------PNLKELSPEKV 890
            KFEP +NW+PPGY+V   K L   +I   E+     +W+  +L       N+  +   K+
Sbjct: 1713 KFEPHENWIPPGYYVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKI 1772

Query: 891  --LEIIK--------QKCVDLD-CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
              +EI +        QKC   + C +  ++ +   Y +  Q +IPDKSIADCVEALIG Y
Sbjct: 1773 KPIEIFQFLNGIQMIQKCYMHNICKLFTSLNN--QYLITIQQAIPDKSIADCVEALIGCY 1830

Query: 940  LIECGPRGALLFMSWLGLKVI-----------PPVTNPESKHLSD----------VLLDG 978
            L   G R AL  M W G+  +            P + P+S +L             L+  
Sbjct: 1831 LTTRGERSALRLMQWFGIDCLHKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWR 1890

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY------------------FLNTLTDCYQRLEFL 1020
            FD+ E S+NY FKD S L+QA TH SY                    +T  DCYQRLEFL
Sbjct: 1891 FDELESSLNYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFL 1950

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDA+LDY+ITR LYED + HSPG LTDLRSALVNN IFA+LAVR+G H +F+  SP L  
Sbjct: 1951 GDAVLDYVITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLH 2010

Query: 1081 VIQRFVKM--QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
             I  FV+    A N    N  +       D   D+E+PKAL D+FES+AGAI+LDS  SL
Sbjct: 2011 TIDVFVRKSNNANNTIPTNTGHLTTNRLSD---DVEIPKALSDIFESLAGAIFLDSNFSL 2067

Query: 1139 DTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFG 1198
            DTVW+++Y IMK  IER +  +PKSP+R+LLELEPE  +F +  ++ DG R+ V   V G
Sbjct: 2068 DTVWQIFYPIMKERIERYTACIPKSPVRQLLELEPEGTKFERARRMVDG-RISVCAHVLG 2126

Query: 1199 KGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            KG + G+GRNY +AK  AAK AL+ L+
Sbjct: 2127 KGRFYGVGRNYRLAKSLAAKRALRVLR 2153



 Score =  126 bits (316), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 97/282 (34%), Positives = 141/282 (50%), Gaps = 31/282 (10%)

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F F   +F +AVV P YRN  +P Y+YVA I  ++ P S FPS  + ++ F  YY  KY 
Sbjct: 1251 FEFRMEEFVNAVVTPGYRNLDQPQYYYVAIIRNDMSPLSPFPS--DKFRNFAAYYINKYN 1308

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVN------------------RKGINLATTSEET 395
              I    QPLLDVD T  RLN L PRY+N                   K  N+ T  +  
Sbjct: 1309 ALITTNNQPLLDVDLTVLRLNLLIPRYMNIYGHNNTNANDNNGDINNSKSNNVYTHKQYY 1368

Query: 396  RREIR-----ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            +++       E L  KQLLVPELC  H FPAS+WRK+V +PSILYRL  LLLA+E+R  +
Sbjct: 1369 QQQNHDDHQGEDLTNKQLLVPELCFRHSFPASVWRKAVCIPSILYRLEHLLLAEELRHRI 1428

Query: 451  ASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
            A E  LG   L E  +    +F      L   Y  +     +  +   E+N+  + DS+ 
Sbjct: 1429 ACETNLGCAYLPECNKILKDDF----VNLSSHYNKNDTCELNKKMSTIELNENNKKDSSY 1484

Query: 511  NEICTEIAKVEIVDKKETVCDSGNEQEN--EDEEKLDKIKSD 550
              +       + ++K++      ++ +N  +DE+  + I ++
Sbjct: 1485 YSVSNSHTSTDQINKEQNNVSISSDNDNIYDDEDHRNSIDAE 1526



 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 90/363 (24%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-----------------------IITISEIKEDDS 37
            +  AI I+N+YCARLPSD  T L P                         ++ +++ D +
Sbjct: 799  LSKAINIINQYCARLPSDYITNLTPKWYWKIFPQPQGFTPSSTGPGSTCGSLKDLQPDGT 858

Query: 38   I-MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEF 96
              ++ C +RLPINS +K ++ G  M  K LA   AA  A  +LY   E+D+    + +E 
Sbjct: 859  FNLYQCVLRLPINSSVKETIVGEPMVCKKLAKYSAAFNAIHLLYLSGEMDSKWELINRET 918

Query: 97   -------------INLYENTEPVVPKT-------PEIETYPD------------------ 118
                         + L     P+  K+         I++  D                  
Sbjct: 919  NPMHHLTSENYGNLKLSSQHSPMKYKSFSSLNGSANIDSESDYGDYASSIGCCESADDEG 978

Query: 119  --------STKRRQFYHKRMASCFTNCRPSVNTPC--YLYAVKMKLTCPIPDEQNKRGRK 168
                    + KRRQ+Y+++  +  +NC P  N P   YLY + M L  P  ++Q  RGR 
Sbjct: 979  EMKSNIQNTVKRRQYYYRKFPTQISNCLPQPNEPSSNYLYYIDMHLVKPFAEQQYLRGRV 1038

Query: 169  IHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS-IELID--------------KNV 213
             H PEN P G  +LTTK +  +  FPIF+R GE ++  IEL                +  
Sbjct: 1039 CHHPENEPIGFGLLTTKPLHHIPIFPIFSRSGEEKIRFIELWSPKSNYQFNDQYLPIQGP 1098

Query: 214  VLSEENLSNTLIFMDYLFTKVLKLKKYLML-FDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
            +L++E +   + F   LF +VL+ +K  +L F+ + +     +VP   D+    IDW F+
Sbjct: 1099 ILTQEQIDRLIKFHRILFQEVLRFEKDSVLEFNFHKAYLQVLVVPARRDT--CSIDWDFI 1156

Query: 273  TLI 275
             L+
Sbjct: 1157 NLV 1159


>gi|260831340|ref|XP_002610617.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
 gi|229295984|gb|EEN66627.1| hypothetical protein BRAFLDRAFT_202604 [Branchiostoma floridae]
          Length = 1760

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 213/495 (43%), Positives = 310/495 (62%), Gaps = 14/495 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M +AI +VNRYC++LPSD+FT L P   +  + + D   +  ++ LPINS L+  + G  
Sbjct: 586  MTSAIGLVNRYCSKLPSDVFTHLTPKSRVDSVSDADGNKYMATLYLPINSSLRDPIQGPV 645

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            MPT+ LA +  A++AC++L++  ELD++L+PV KE I+  E  E    +  +    P +T
Sbjct: 646  MPTRRLAEKAVALKACQLLHQAGELDDNLLPVGKEVIHYEEEEEEFEVEDSDGHARPGTT 705

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KR Q Y K++   F    P     CYLY + M LT P+P+E N RGRK+HPPE + +   
Sbjct: 706  KRHQVYKKQIPKAFQQSLPVPAASCYLYIINMVLTEPLPEELNIRGRKLHPPEATTRCFG 765

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            +LT+K++P++  FP++TR GEV +S+ L    + + +  L     F  Y+F+ VL+L+K 
Sbjct: 766  LLTSKHVPQIPCFPVYTRSGEVSISLRLCASGINVDQNQLRLVQNFHGYVFSHVLRLEKK 825

Query: 241  LMLFDPNCSENSYFIVP-----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN-F 294
             + + P   ++ YF+VP        +++Q+ ID+ F+  I +    + ++ P+   +N F
Sbjct: 826  PLYYVPADLQSWYFVVPLNKGLLADNADQLFIDFNFLEHIDQ---SLDKEKPKYSPDNPF 882

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             F E+ F DAVV P YRN  +P  FYVAEI   ++PRS FPS    Y TF+EYY  +YG 
Sbjct: 883  KFQEADFIDAVVTPSYRNADQPQRFYVAEICYTLNPRSEFPSA--DYATFDEYYLKRYGE 940

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC 414
             I NL+QPLLDVDHTS RLN LTPR++N+KG  L T+S ETR+  RE+L  KQ+LVPELC
Sbjct: 941  AITNLDQPLLDVDHTSSRLNLLTPRHLNQKGKALPTSSAETRKAKRENLQSKQILVPELC 1000

Query: 415  LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGW 474
             IHP PASLWRK+V LPS+LYR+  LL+A+E+R  +A E G+G+ +L E    P   F  
Sbjct: 1001 EIHPVPASLWRKAVCLPSVLYRVTTLLIAEELRVQIAQEAGIGQAVLPEGYAHPRLEFP- 1059

Query: 475  KMKKLKEKYGWDTKD 489
             +KK +E   WD  +
Sbjct: 1060 HLKKGEEV--WDISE 1072



 Score =  392 bits (1006), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 237/526 (45%), Positives = 310/526 (58%), Gaps = 86/526 (16%)

Query: 772  DLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLS 813
            DL++H GPSP                  +RLETIGDSFLK+AIT FLYCTY  VHEGKLS
Sbjct: 1221 DLDSHPGPSPSLILQALTLSNAGDFFNLERLETIGDSFLKHAITTFLYCTYSRVHEGKLS 1280

Query: 814  HLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASL 873
            ++RS+QVSN NL++LGK+K     M+A+ F+P  NWLPPG+ +    E    +AG  +  
Sbjct: 1281 YMRSRQVSNLNLYRLGKRKGLASRMVASIFDPAVNWLPPGFCIQNNREDKE-DAGSSSKD 1339

Query: 874  WNCLSLPNLKELSPEK--VLEIIKQKCVDLDCTVDMN---VQSVVPYNLVTQHSIPDKSI 928
             +    P    ++  K  + ++       L  +V +N   ++ ++ Y+L  +H I DKSI
Sbjct: 1340 SSLDVEPGGNGMTTSKNPIAQVTGYDVTPLKASVLVNGDAIKRLLSYDLHMEHCIADKSI 1399

Query: 929  ADCVEALIGAYLIECGPRGALLFMSWLGLKV--------IPPVTNP-------------E 967
            ADCVEAL+G YL  CGPR A LF+ WLG+KV          P T+P              
Sbjct: 1400 ADCVEALLGCYLTTCGPRAAQLFLCWLGVKVSYLDQFDFAEPDTDPFDDLSGLDSSYEDW 1459

Query: 968  SKHLSDVL-LDGFDKFE--ESINYRFKDKSYLLQAMTHA--------------------- 1003
             ++ S V  L+ F K    E   Y    K  L   + HA                     
Sbjct: 1460 DQNPSTVCDLETFMKVSCAEEYGYIAPPKPPLFHHVGHAQDKLSHMLSGYQQFEETVQYS 1519

Query: 1004 ----SYFLNTLT----------DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
                +Y L   T          DCYQRLEFLGDA+LDYLIT HL++D + HSPG LTDLR
Sbjct: 1520 FNDKAYMLQAFTHPSYHYNTITDCYQRLEFLGDAVLDYLITNHLFKDPQQHSPGALTDLR 1579

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFTLNQEYYLMEGEC 1107
            SALVNN IFASLAV+  +H + K +SP L  +I  FV  + +   +  ++ + Y+ +   
Sbjct: 1580 SALVNNTIFASLAVKYDYHKYLKFVSPELFNIISNFVQFQQEQGEEQGMDSQTYINDEGE 1639

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRE 1167
            +E+EDIEVPKALGD+FESVAGAIYLDSGMSL+TVW+VYY +MK  I++ S  VP+SP+RE
Sbjct: 1640 EESEDIEVPKALGDVFESVAGAIYLDSGMSLETVWRVYYRMMKPLIDKFSAKVPRSPVRE 1699

Query: 1168 LLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK 1213
            LLE+EPE A+FS  E+  DG +VRVTV V GKG +KG+GRNY IAK
Sbjct: 1700 LLEMEPETAKFSPSERTYDG-KVRVTVTVIGKGQFKGVGRNYRIAK 1744


>gi|341893002|gb|EGT48937.1| CBN-DCR-1 protein [Caenorhabditis brenneri]
          Length = 1927

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 238/505 (47%), Positives = 311/505 (61%), Gaps = 76/505 (15%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +R ETIGDSFLK+A T +LY T  + HEGKLS  RSK+VSN NL++LGK+    + 
Sbjct: 1424 GMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1483

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL-----KELSPEKVL- 891
            +IA KF+  D+WLPP Y +P           F A        PN      K++  E++L 
Sbjct: 1484 IIANKFDAHDSWLPPCY-IPT--------CNFKA--------PNTDDAEEKDIEMERLLN 1526

Query: 892  -EIIKQKCVDLDCTVDMNVQ--------------------------SVVPYNLVTQHSIP 924
             E I++K  +     DM ++                          S +PYNL+TQ +I 
Sbjct: 1527 GETIEEKPQN-KTGWDMELKDEAKTTTEKIETITFPKRTALVNEDISPLPYNLLTQQNIS 1585

Query: 925  DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPP-------------VTNPESKHL 971
            DKSIAD +EALIG +L+  GP   L  MSW+GLKVI               +  P + + 
Sbjct: 1586 DKSIADAMEALIGVHLLTLGPNPTLKVMSWMGLKVIQKDAVTDVAAPLLRFIDTPTNPNA 1645

Query: 972  SDVLLDG------FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            S + LD       F K EE I YRFK+++YL+QA THASY  N +T CYQRLEFLGDA+L
Sbjct: 1646 STIQLDNLWQQFQFAKLEEKIGYRFKERAYLVQAFTHASYSNNRVTGCYQRLEFLGDAVL 1705

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DY+ITR L+ED R +SPG LTDLRSALVNN IFASLAV+  F   F  + PGLH +I++F
Sbjct: 1706 DYMITRFLFEDVRQYSPGVLTDLRSALVNNTIFASLAVKYEFQKHFIAMCPGLHHMIEKF 1765

Query: 1086 VKMQAENDF--TLNQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
            V++ A+ +F    N E Y++    E +    ED+EVPKALGD+FESVAGAIYLDSG +LD
Sbjct: 1766 VQLCADRNFDTNFNAEMYMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLD 1825

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGK 1199
            T W+V + +M+S IE    + P+SPIREL+ELE   ARFSK E++ +  +VRVTV+V   
Sbjct: 1826 TTWQVLFHMMRSTIESCCANPPRSPIRELMELESSKARFSKMERILETGKVRVTVDVGNN 1885

Query: 1200 GSYKGIGRNYCIAKCTAAKCALKHL 1224
              + G+GRNY IAK TAAK AL++L
Sbjct: 1886 MRFTGMGRNYRIAKATAAKRALRYL 1910



 Score =  286 bits (733), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 178/485 (36%), Positives = 267/485 (55%), Gaps = 20/485 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT-GH 59
            M NAI +VNRYCA+LPSDIFTRL P  TI  +++     +   + LPINSP+K ++    
Sbjct: 568  MSNAIALVNRYCAKLPSDIFTRLVPNSTIIPVEDHGVTKYCAELLLPINSPIKHAIILKD 627

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI-NLYENTEPVVPK-TPEIETYP 117
             MP K  A    A+EACR L+   ELD++L+P  +E I  L E  +    +  P +    
Sbjct: 628  PMPNKKAAQMAVALEACRQLHLKGELDDNLLPKGRESIAKLLEQMDDEPDEYAPGMAAKV 687

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             S+KR+Q Y K++A             CY+YA++++         N R R+   P+    
Sbjct: 688  GSSKRKQLYDKKIARALNESHVEPEKECYIYALELERLRDSEPSPNTRRRRFEDPKEYEY 747

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
                L+TK IPK+  FP+F R G ++V + L  +   +++E L     F +YLFT+VL++
Sbjct: 748  CFGFLSTKEIPKIPPFPLFLRQGNMKVRLTLAPQKTTVTKEQLEEIQYFHNYLFTQVLQM 807

Query: 238  KKYLML-FD--PNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENF 294
             K   L FD   N   N+  +    S  E   I+ K+++ +  +  ++ +   ++ R  F
Sbjct: 808  CKTGNLEFDVTANAPLNTLIVPLNKSKEEGYSINMKYVSGVVANMENMPRVPTDEVRRKF 867

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
             FD   ++DAVVMPWYRN  +P ++YVAEI+T++ P S FP   + + TF EY+  KY L
Sbjct: 868  KFDPENYKDAVVMPWYRNMEQPAFYYVAEILTDLRPSSQFPD--HNFTTFNEYFIKKYNL 925

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRK------GINLATTSEETRREIRESL---GK 405
            +I + EQ LLDVD TS RLN L PR  ++         +  +++  T  E RES     +
Sbjct: 926  EIYDQEQSLLDVDFTSNRLNLLLPRIQSQARRARSFSGSSTSSAPPTPSESRESGPHPSQ 985

Query: 406  KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIR-TAVASEIGLG--KVILD 462
            +Q+L+PEL  +HP  A+LW    +LPSI YR+N LLL+DE+R T +    G G  +  L 
Sbjct: 986  RQILIPELMDVHPISATLWNVIAALPSIFYRINQLLLSDELRETILVKAFGKGSEETKLK 1045

Query: 463  EKVEW 467
            +  EW
Sbjct: 1046 DSFEW 1050


>gi|308485595|ref|XP_003104996.1| CRE-DCR-1 protein [Caenorhabditis remanei]
 gi|308257317|gb|EFP01270.1| CRE-DCR-1 protein [Caenorhabditis remanei]
          Length = 1941

 Score =  403 bits (1036), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 234/488 (47%), Positives = 304/488 (62%), Gaps = 43/488 (8%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +R ETIGDSFLK+A T +LY T  + HEGKLS  RSK+VSN NL++LGK+    + 
Sbjct: 1440 GMSLERFETIGDSFLKFATTDYLYHTLQDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1499

Query: 838  MIATKFEPRDNWLPPGYFVP----KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
            ++A KF+  D+WLPP Y VP    K    +  E      +   L+   ++E   +K    
Sbjct: 1500 IVANKFDAHDSWLPPCY-VPTCDFKAPNNSDAEEK-DKEIERILNGQTIEEKPEDKTGWD 1557

Query: 894  I----KQKCVDLDCTVDMNVQSVV--------PYNLVTQHSIPDKSIADCVEALIGAYLI 941
            I     +   D   T++   QS +        PYNL+TQ +I DKSIAD +EALIG +L+
Sbjct: 1558 IGGDTAKSTADGIETINFPKQSRLLNEDISPLPYNLLTQQNISDKSIADAMEALIGVHLL 1617

Query: 942  ECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDG-------------------FDKF 982
              GP   L  MSW+GLKVI      E  H     +D                    F   
Sbjct: 1618 TLGPNPTLKVMSWMGLKVIQKDAKTEVAHPLLRFIDTPANPDASLKALNNLWQQYQFANL 1677

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            EE I YRFK+++YL+QA THASY  N +T CYQRLEFLGDA+LDY+ITR+L+ED R +SP
Sbjct: 1678 EERIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDVRQYSP 1737

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF--TLNQEY 1100
            G LTDLRSALVNN IFASLAV+  F   F  + PGLH +I++FVK+ A+ +F    N E 
Sbjct: 1738 GVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLHHMIEKFVKLCADRNFDTNFNAEM 1797

Query: 1101 YLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
            Y++    E +    ED+EVPKALGD+FESVAGAIYLDSG +LDT W+V + +M+S I+  
Sbjct: 1798 YMVTTEEEIDEGHEEDVEVPKALGDVFESVAGAIYLDSGRNLDTTWQVLFHMMRSTIDSC 1857

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
              + P+SPIREL+ELE   ARFSK E++ +  +VRVTV+V     + G+GRNY IAK TA
Sbjct: 1858 CANPPRSPIRELMELEASKARFSKMERILESGKVRVTVDVGNNMRFTGMGRNYRIAKATA 1917

Query: 1217 AKCALKHL 1224
            AK ALK+L
Sbjct: 1918 AKRALKYL 1925



 Score =  256 bits (654), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 177/501 (35%), Positives = 260/501 (51%), Gaps = 36/501 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT-GH 59
            + NAI +VNRYC++LPSDIFTRL P   I  +++     +   + LPINSP+K ++    
Sbjct: 569  LSNAIALVNRYCSKLPSDIFTRLVPHSRIIPVEDRGVTKYCAELLLPINSPIKHAIILKD 628

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI-NLYENTEPVVPK-TPEIETYP 117
             MP K  A    A+EACR L+   ELD++L+P  +E I  L E+ +    +  P +    
Sbjct: 629  PMPNKKAAQMAVALEACRQLHLKGELDDNLLPKGRESIAKLLEHIDDEPDEYAPGMALKV 688

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             S+KR+Q Y K++A      R      CY+YA++++         N +GR    P     
Sbjct: 689  GSSKRKQLYDKKIARALNESRVEPEKECYIYALELERFREPDSILNPKGRVFQDPIEYDY 748

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
                L+TK IPK+  FPIF R G + V +    K   ++E  L     F +Y+FT+VL++
Sbjct: 749  CFGFLSTKDIPKIPPFPIFLRQGNMTVRLTSAPKKTSVTERQLEEIQHFHNYIFTQVLQM 808

Query: 238  KKYLMLFDPNCSEN-SYFIVP---TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
             K  + FD + +   +  IVP      D     I+ K++T +  +  ++ +   +  R  
Sbjct: 809  CKNGLEFDVSATAPLNTLIVPLNKCKDDEGTYSINMKYVTEVVANMENMPRVPTDDVRRK 868

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            + FD   ++DA+VMPWYRN  +P ++YVAEI+T  +P S FP     ++TF EY+  KY 
Sbjct: 869  YKFDAENYKDAIVMPWYRNVEQPAFYYVAEILTQFNPSSQFPD--TNFETFNEYFIKKYN 926

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTP-----RYVNRKGINLATTSEETRREIRESL----- 403
            L+I +  Q LLDVD TS RLN L P     +   R+    + TS   R    +S      
Sbjct: 927  LEIYDQNQALLDVDFTSNRLNLLLPRLQPHQRRQRRDSTSSVTSVTDRASESKSSESVTS 986

Query: 404  ------GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
                   ++Q+LVPEL  IHP  A+LW    +LPSI YRLN LLL+DE+R     EI L 
Sbjct: 987  SSGAHSTQRQILVPELMDIHPISATLWNVIAALPSIFYRLNQLLLSDELR-----EIILQ 1041

Query: 458  KVI------LDEKVEWPPFNF 472
            K        L   +EW P  +
Sbjct: 1042 KAFSREDTKLKASLEWSPLTY 1062


>gi|20385913|gb|AAM21495.1|AF430845_1 dicer-like protein [Mus musculus]
          Length = 1917

 Score =  403 bits (1035), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 295/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 628  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 684

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 685  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 745  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 804

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS++ L        Y+F+ +L+L+K 
Sbjct: 805  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFILSQQMLELITRLHQYIFSHILRLEKP 864

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 865  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 924

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 925  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 982

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 983  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1042

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1043 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1100



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1531 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1589

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1590 VIKRTSREKALDPAQENGSSQQKSLSGSCAAPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1649

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1650 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1709

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1710 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1769

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1770 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1829

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1830 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1888

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1889 GRSYRIAKSAAARRALRSLKANQP 1912



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYVV 1388


>gi|37360146|dbj|BAC98051.1| mKIAA0928 protein [Mus musculus]
          Length = 1475

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 186 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 242

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
           M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 243 MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 302

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
           KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 303 KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 362

Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
           ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 363 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 422

Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
            + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 423 ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 482

Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
              ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 483 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 540

Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
           NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 541 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 600

Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
           P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 601 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 658



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1089 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1147

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1148 VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1207

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1208 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1267

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1268 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1327

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1328 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1387

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1388 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1446

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1447 GRSYRIAKSAAARRALRSLKANQP 1470



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 872 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 931

Query: 842 KFEPRDNWLPPGYFV 856
            F+P  NWLPPGY V
Sbjct: 932 IFDPPVNWLPPGYVV 946


>gi|392895692|ref|NP_498761.2| Protein DCR-1 [Caenorhabditis elegans]
 gi|408360292|sp|P34529.3|DCR1_CAEEL RecName: Full=Endoribonuclease dcr-1
 gi|379657006|emb|CCD71200.2| Protein DCR-1 [Caenorhabditis elegans]
          Length = 1910

 Score =  402 bits (1032), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 229/492 (46%), Positives = 302/492 (61%), Gaps = 51/492 (10%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +R ETIGDSFLK+A T +LY T  + HEGKLS  RSK+VSN NL++LGK+    + 
Sbjct: 1409 GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1468

Query: 838  MIATKFEPRDNWLPPGYF-------------------VPKYLETALIEAGFP-ASLWNCL 877
            ++A KF+  D+WLPP Y                    + + L+  +IE      + W+  
Sbjct: 1469 IVANKFDAHDSWLPPCYIPTCDFKAPNTDDAEEKDNEIERILDGQVIEEKPENKTGWDIG 1528

Query: 878  SLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937
               +       + +   KQ  V  D        S +PYNL+TQ  I DKSIAD VEALIG
Sbjct: 1529 GDVSKSTTDGIETITFPKQARVGNDDI------SPLPYNLLTQQHISDKSIADAVEALIG 1582

Query: 938  AYLIECGPRGALLFMSWLGLKVIPP-------------VTNPESKHLSDVLLDG------ 978
             +L+  GP   L  M+W+GLKVI               +  P + + S   L+       
Sbjct: 1583 VHLLTLGPNPTLKVMNWMGLKVIQKDQKSDVPSPLLRFIDTPTNPNASLNFLNNLWQQFQ 1642

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            F + EE I YRFK+++YL+QA THASY  N +T CYQRLEFLGDA+LDY+ITR+L+ED R
Sbjct: 1643 FTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSR 1702

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF--TL 1096
             +SPG LTDLRSALVNN IFASLAV+  F   F  + PGL+ +I++FVK+ +E +F    
Sbjct: 1703 QYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNF 1762

Query: 1097 NQEYYLM----EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
            N E Y++    E +  + EDIEVPKA+GD+FESVAGAIYLDSG +LDT W+V + +M+  
Sbjct: 1763 NAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGT 1822

Query: 1153 IERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            IE    + P+SPIREL+E E    RFSK E++ +  +VRVTVEV     + G+GRNY IA
Sbjct: 1823 IELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRFTGMGRNYRIA 1882

Query: 1213 KCTAAKCALKHL 1224
            K TAAK ALK+L
Sbjct: 1883 KATAAKRALKYL 1894



 Score =  277 bits (709), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 189/533 (35%), Positives = 281/533 (52%), Gaps = 31/533 (5%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRS-VTGH 59
            M  AI ++NRYC++LPSDIFTRL P   I  I+E+    +   + LPINSP+K + V  +
Sbjct: 568  MSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKN 627

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI-NLYENT-EPVVPKTPEIETYP 117
             MP K  A    A+EACR L+   ELD++L+P  +E I  L E+  E      P I    
Sbjct: 628  PMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEPDEYAPGIAAKV 687

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             S+KR+Q Y K++A          +  C++YA +++         N + RK   P N   
Sbjct: 688  GSSKRKQLYDKKIARALNESFVEADKECFIYAFELERFREAELTLNPKRRKFEDPFNYEY 747

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
                L+ K IPK+  FP+F R G ++V + +  K   ++   L    +F +YLFT+VL++
Sbjct: 748  CFGFLSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYLFTQVLQM 807

Query: 238  KKYLML-FD--PNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE-R 291
             K   L FD   N   N+  IVP     D     I+ K+++ +  +  ++ + IP+ E R
Sbjct: 808  CKTGNLEFDGTSNAPLNT-LIVPLNKRKDDMSYTINMKYVSEVVANMENMPR-IPKDEVR 865

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
              + F+   ++DA+VMPWYRN  +P ++YVAEI+    P S FP     ++TF EY+  K
Sbjct: 866  RQYKFNAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFPD--THFETFNEYFIKK 923

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR----------KGINLATTSEETRREIRE 401
            Y L+I +  Q LLDVD TS RLN L PR  N+             N+   S    +E   
Sbjct: 924  YKLEIYDQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRTVSNSSTSNIPQASASDSKESNT 983

Query: 402  SL---GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIR-TAVASEIGLG 457
            S+    ++Q+LVPEL  IHP  A+LW    +LPSI YR+N LLL DE+R T +    G  
Sbjct: 984  SVPHSSQRQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETILVKAFGKE 1043

Query: 458  KVILDEKVEWPPFNFGWKMKKLKE---KYGWDTKDANDVIVDDTEVNDTKEDD 507
            K  LD+ VEW    +  + ++ +    K     +D N   ++D E  +T+E+D
Sbjct: 1044 KTKLDDNVEWNSLAYATEYEEKQTIIVKKIQQLRDLNQKSIEDQE-RETREND 1095


>gi|19072786|gb|AAL84638.1|AF484524_1 endoribonuclease Dicer [Mus musculus x Mus spretus]
          Length = 1539

 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 611  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 667

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 668  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 727

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 728  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 787

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 788  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 847

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 848  ALEFKPTGAESAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 907

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 908  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 965

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 966  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1025

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1026 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1083



 Score =  103 bits (257), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 60/75 (80%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTY + HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1297 ERLEMLGDSFLKHAITTYLFCTYHDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1356

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1357 IFDPPVNWLPPGYVV 1371


>gi|148686840|gb|EDL18787.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Mus musculus]
          Length = 1916

 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1530 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1589 VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1648

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1649 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1708

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1709 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1768

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1769 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1828

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1829 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1887

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1888 GRSYRIAKSAAARRALRSLKANQP 1911



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|257051057|sp|Q8R418.3|DICER_MOUSE RecName: Full=Endoribonuclease Dicer; AltName:
            Full=Double-strand-specific ribonuclease mDCR-1
          Length = 1916

 Score =  401 bits (1031), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1530 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1589 VIKRTSREKALDPAQENGSSQQKSLSGSCAAPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1648

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1649 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1708

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1709 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1768

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1769 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1828

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1829 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1887

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1888 GRSYRIAKSAAARRALRSLKANQP 1911



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|117168271|ref|NP_683750.2| endoribonuclease Dicer [Mus musculus]
 gi|225000568|gb|AAI72621.1| Dicer1, Dcr-1 homolog (Drosophila) [synthetic construct]
          Length = 1906

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1089



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1520 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1578

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1579 VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1638

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1639 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1698

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1699 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1758

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1759 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1818

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1819 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1877

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1878 GRSYRIAKSAAARRALRSLKANQP 1901



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1303 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1363 IFDPPVNWLPPGYVV 1377


>gi|148686841|gb|EDL18788.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Mus musculus]
          Length = 1908

 Score =  401 bits (1030), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 619  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 675

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 676  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 735

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 736  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 795

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 796  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 855

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 856  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 915

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 916  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 973

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 974  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1033

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1034 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1091



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1522 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1580

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1581 VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1640

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1641 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1700

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1701 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1760

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1761 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1820

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1821 YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 1879

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1880 GRSYRIAKSAAARRALRSLKANQP 1903



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1305 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1364

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1365 IFDPPVNWLPPGYVV 1379


>gi|346716367|ref|NP_001231198.1| endoribonuclease Dicer [Cricetulus griseus]
 gi|257051055|sp|A0MQH0.3|DICER_CRIGR RecName: Full=Endoribonuclease Dicer
 gi|116831677|gb|ABK28790.1| DICER [Cricetulus griseus]
          Length = 1917

 Score =  400 bits (1029), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+ FM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTGAESAYCVLPLNVVNDSSTLDIDFTFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 200/385 (51%), Positives = 252/385 (65%), Gaps = 59/385 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1530 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588

Query: 960  --------------------------------------------------IPP---VTNP 966
                                                              IPP     +P
Sbjct: 1589 VIKRTSREKALYPAQENFSSQQKSLSGSCAATAASPRSSAGKDLEYGCLKIPPRCMFDHP 1648

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            +++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILD
Sbjct: 1649 DAEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILD 1708

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            YLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV
Sbjct: 1709 YLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFV 1768

Query: 1087 KMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            + Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+V
Sbjct: 1769 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQV 1828

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
            YY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG
Sbjct: 1829 YYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKG 1887

Query: 1205 IGRNYCIAKCTAAKCALKHLKSAKP 1229
            +GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1888 VGRSYRIAKSAAARRALRSLKANQP 1912



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|344248388|gb|EGW04492.1| Endoribonuclease Dicer [Cricetulus griseus]
          Length = 1907

 Score =  400 bits (1028), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+ FM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTGAESAYCVLPLNVVNDSSTLDIDFTFMEDIEKSEARIGIPSTKYSKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1089



 Score =  362 bits (930), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 200/385 (51%), Positives = 252/385 (65%), Gaps = 59/385 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1520 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1578

Query: 960  --------------------------------------------------IPP---VTNP 966
                                                              IPP     +P
Sbjct: 1579 VIKRTSREKALYPAQENFSSQQKSLSGSCAATAASPRSSAGKDLEYGCLKIPPRCMFDHP 1638

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            +++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILD
Sbjct: 1639 DAEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILD 1698

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            YLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV
Sbjct: 1699 YLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFV 1758

Query: 1087 KMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            + Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+V
Sbjct: 1759 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQV 1818

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
            YY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG
Sbjct: 1819 YYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKG 1877

Query: 1205 IGRNYCIAKCTAAKCALKHLKSAKP 1229
            +GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1878 VGRSYRIAKSAAARRALRSLKANQP 1902



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1303 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1363 IFDPPVNWLPPGYVV 1377


>gi|351701180|gb|EHB04099.1| Endoribonuclease Dicer [Heterocephalus glaber]
          Length = 1935

 Score =  400 bits (1027), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 292/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTQELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETNVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  N PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPNQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1547 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1605

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1606 VIKRTGREKALCPALENFSSQQKSLSGSCASAVAAGSRSSAWKDLEYGCLKIPPRCMFDH 1665

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1666 PDADKTLTHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1725

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1726 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1785

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1786 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1845

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1846 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1904

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1905 GVGRSYRIAKSAAARRALRSLKANQP 1930



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|126290301|ref|XP_001367933.1| PREDICTED: endoribonuclease Dicer-like [Monodelphis domestica]
          Length = 1923

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/478 (44%), Positives = 295/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ ++ G +
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDG---TFYSTLYLPINSPLRAAIVGPQ 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MNCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  N  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN-FVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    +     +  +E  F+F 
Sbjct: 864  ALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDIEKSEARIGIPSTQYTKETPFIFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSP--EYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   A++ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK 1099



 Score =  359 bits (922), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 198/386 (51%), Positives = 251/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1535 NCGIDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1594 VIKRSDWETTLYPSKDNFNSQQKNLSVNYASISVANLQSSLYKDLEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P+++   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PDAEKTLNHLISGFENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1773

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1774 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1833

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1834 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1892

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 GVGRSYRIAKSAAARRALRSLKANQP 1918



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1316 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1375

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1376 IFDPPVNWLPPGYIV 1390


>gi|297695799|ref|XP_002825114.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pongo abelii]
 gi|297695801|ref|XP_002825115.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pongo abelii]
 gi|297695803|ref|XP_002825116.1| PREDICTED: endoribonuclease Dicer isoform 3 [Pongo abelii]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDLEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|114654619|ref|XP_001154369.1| PREDICTED: endoribonuclease Dicer isoform 6 [Pan troglodytes]
 gi|410048689|ref|XP_003952618.1| PREDICTED: endoribonuclease Dicer [Pan troglodytes]
 gi|410219112|gb|JAA06775.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410256210|gb|JAA16072.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410256212|gb|JAA16073.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410306234|gb|JAA31717.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410306236|gb|JAA31718.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410351815|gb|JAA42511.1| dicer 1, ribonuclease type III [Pan troglodytes]
 gi|410351817|gb|JAA42512.1| dicer 1, ribonuclease type III [Pan troglodytes]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|29294649|ref|NP_085124.2| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|29294651|ref|NP_803187.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|404312696|ref|NP_001258211.1| endoribonuclease Dicer isoform 1 [Homo sapiens]
 gi|257051056|sp|Q9UPY3.3|DICER_HUMAN RecName: Full=Endoribonuclease Dicer; AltName: Full=Helicase with
            RNase motif; Short=Helicase MOI
 gi|20521696|dbj|BAA76772.2| KIAA0928 protein [Homo sapiens]
 gi|119602002|gb|EAW81596.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_b [Homo sapiens]
 gi|152012889|gb|AAI50288.1| Dicer 1, ribonuclease type III [Homo sapiens]
 gi|307685563|dbj|BAJ20712.1| dicer 1, ribonuclease type III [synthetic construct]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|397525875|ref|XP_003832878.1| PREDICTED: endoribonuclease Dicer isoform 1 [Pan paniscus]
 gi|397525877|ref|XP_003832879.1| PREDICTED: endoribonuclease Dicer isoform 2 [Pan paniscus]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|296215835|ref|XP_002754306.1| PREDICTED: endoribonuclease Dicer isoform 3 [Callithrix jacchus]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNHQQKNLSVSCAAASVASSRSSVLKDLEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNYLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|431839251|gb|ELK01178.1| Endoribonuclease Dicer [Pteropus alecto]
          Length = 1921

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1099



 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 200/385 (51%), Positives = 250/385 (64%), Gaps = 60/385 (15%)

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV--- 959
            C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV   
Sbjct: 1534 CGVDAGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPV 1592

Query: 960  --------------------------------------------------IPP---VTNP 966
                                                              IPP     +P
Sbjct: 1593 VKRTDRETATCPTRESFGSQQKSLSGGRAAACAASPRSPVFKDLEYGCLKIPPRCMFDHP 1652

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            ++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILD
Sbjct: 1653 DADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILD 1712

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            YLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV
Sbjct: 1713 YLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFV 1772

Query: 1087 KMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            + Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+V
Sbjct: 1773 QFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQV 1832

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
            YY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG
Sbjct: 1833 YYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKG 1891

Query: 1205 IGRNYCIAKCTAAKCALKHLKSAKP 1229
            +GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 VGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 57/116 (49%), Positives = 76/116 (65%), Gaps = 15/116 (12%)

Query: 746  SPGKSCEH-----GIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFL 800
            SPG+S        G+I    T S+ S  F  +LE        RLE +GDSFLK+AIT +L
Sbjct: 1283 SPGRSSRTLGPNPGLILQALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYL 1332

Query: 801  YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            +CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1333 FCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVV 1388


>gi|426377909|ref|XP_004055696.1| PREDICTED: endoribonuclease Dicer isoform 1 [Gorilla gorilla gorilla]
 gi|426377911|ref|XP_004055697.1| PREDICTED: endoribonuclease Dicer isoform 2 [Gorilla gorilla gorilla]
 gi|426377913|ref|XP_004055698.1| PREDICTED: endoribonuclease Dicer isoform 3 [Gorilla gorilla gorilla]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNNQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|332223646|ref|XP_003260983.1| PREDICTED: endoribonuclease Dicer isoform 1 [Nomascus leucogenys]
 gi|332223648|ref|XP_003260984.1| PREDICTED: endoribonuclease Dicer isoform 2 [Nomascus leucogenys]
 gi|441666339|ref|XP_004091884.1| PREDICTED: endoribonuclease Dicer [Nomascus leucogenys]
          Length = 1922

 Score =  399 bits (1024), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  365 bits (938), Expect = 7e-98,   Method: Compositional matrix adjust.
 Identities = 202/386 (52%), Positives = 254/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 962  PVT---------------NPESKHLS---------------------------------- 972
             +                N + K+LS                                  
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAPSVASSRSSVLKDLEYGCLKIPPRCMFDH 1652

Query: 973  -------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|355778829|gb|EHH63865.1| hypothetical protein EGM_16920 [Macaca fascicularis]
          Length = 1910

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1089



 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1522 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1580

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1581 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASMASSRSSVLKDLEYGCLKIPPRCMFDH 1640

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1641 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1700

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1701 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1760

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1761 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1820

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1821 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1879

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1880 GVGRSYRIAKSAAARRALRSLKANQP 1905



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1301 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1360

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1361 IFDPPVNWLPPGYVV 1375


>gi|432096208|gb|ELK27069.1| Endoribonuclease Dicer [Myotis davidii]
          Length = 1970

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 222/533 (41%), Positives = 313/533 (58%), Gaps = 9/533 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
            P PASLWRK+V LPS+LYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK K
Sbjct: 1032 PIPASLWRKAVCLPSVLYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1090

Query: 478  KLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
             +  K      +++    D    + T   + A ++  +  + +E  D+    C
Sbjct: 1091 SIDSKSFISIANSSSAENDHYCKHSTIVPEHAAHQGASRTSSLENHDQMSVTC 1143



 Score =  230 bits (586), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 129/275 (46%), Positives = 156/275 (56%), Gaps = 54/275 (19%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1522 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1580

Query: 962  PVT------------------------------------------------NPESKHLSD 973
             +                                                 +P++     
Sbjct: 1581 VIKRTEHEKAMCPARENCSSQQRSLSGSRAAAAGKDVEYGCLKIPPRCMFDHPDADKTLT 1640

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
             L+ GF+ FEE INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HL
Sbjct: 1641 HLISGFENFEEKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHL 1700

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            YED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L +VI  FV+ Q E +
Sbjct: 1701 YEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFQVIDVFVQFQLEKN 1760

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
                 E   M+ E   AE + V     D     +G
Sbjct: 1761 -----EMQGMDSEVSAAERVRVRGGAADGGSGESG 1790



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            VPKA+GD+FES+AGAIY+DSGMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE
Sbjct: 1852 VPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPE 1911

Query: 1175 NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1912 TAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1965



 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 44/75 (58%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK++     M+ +
Sbjct: 1303 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKRGLPSRMVVS 1362

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1363 IFDPPVNWLPPGYAV 1377


>gi|383872414|ref|NP_001244801.1| endoribonuclease Dicer [Macaca mulatta]
 gi|380811118|gb|AFE77434.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811120|gb|AFE77435.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811122|gb|AFE77436.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|380811124|gb|AFE77437.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
 gi|383417045|gb|AFH31736.1| endoribonuclease Dicer isoform 1 [Macaca mulatta]
          Length = 1920

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1532 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1591 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASMASSRSSVLKDLEYGCLKIPPRCMFDH 1650

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1651 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1710

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1711 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1770

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1771 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1830

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1831 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1889

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1890 GVGRSYRIAKSAAARRALRSLKANQP 1915



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1311 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1371 IFDPPVNWLPPGYVV 1385


>gi|402877099|ref|XP_003902280.1| PREDICTED: endoribonuclease Dicer isoform 1 [Papio anubis]
 gi|402877101|ref|XP_003902281.1| PREDICTED: endoribonuclease Dicer isoform 2 [Papio anubis]
 gi|402877103|ref|XP_003902282.1| PREDICTED: endoribonuclease Dicer isoform 3 [Papio anubis]
          Length = 1920

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1532 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1591 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDLEYGCLKIPPRCMFDH 1650

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1651 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1710

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1711 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1770

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1771 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1830

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1831 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1889

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1890 GVGRSYRIAKSAAARRALRSLKANQP 1915



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1311 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1371 IFDPPVNWLPPGYVV 1385


>gi|345803797|ref|XP_868526.2| PREDICTED: endoribonuclease Dicer isoform 4 [Canis lupus familiaris]
          Length = 1923

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1099



 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 251/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI- 960
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+ 
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 961  ------------PPVTN------------------------------------------- 965
                        PP  N                                           
Sbjct: 1594 VMKRTDREKTMCPPRENFSSQQKNLSGGRAAASVASLRPSVLKDLEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1773

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1774 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1833

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1834 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1892

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 GVGRSYRIAKSAAARRALRSLKANQP 1918



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYVV 1388


>gi|403274211|ref|XP_003928879.1| PREDICTED: endoribonuclease Dicer isoform 1 [Saimiri boliviensis
            boliviensis]
 gi|403274213|ref|XP_003928880.1| PREDICTED: endoribonuclease Dicer isoform 2 [Saimiri boliviensis
            boliviensis]
          Length = 1922

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDLEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|21665773|emb|CAB38857.2| hypothetical helicase K12H4.8-like protein [Homo sapiens]
          Length = 1912

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1089



 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1524 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1582

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1583 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1642

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1643 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1702

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1703 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1762

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1763 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1822

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1823 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1881

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1882 GVGRSYRIAKSAAARRALRSLKANQP 1907



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1303 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1363 IFDPPVNWLPPGYVV 1377


>gi|344274190|ref|XP_003408901.1| PREDICTED: endoribonuclease Dicer [Loxodonta africana]
          Length = 1920

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV ++IEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTIAIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 253/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1532 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590

Query: 962  PV---------------TNPESKHLS---------------------------------- 972
             +               +N + K+LS                                  
Sbjct: 1591 VIKRADRENAGRSARENSNSQQKNLSVSCAVPSGASARTSVLKDLEYGCLKIPPRCMFDH 1650

Query: 973  -------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1651 PDADKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1710

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1711 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1770

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1771 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLELVWQ 1830

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1831 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1889

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1890 GVGRSYRIAKSAAARRALRSLKANQP 1915



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1309 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1368

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1369 IFDPPVNWLPPGYVV 1383


>gi|308237838|ref|NP_001184123.1| endoribonuclease Dicer [Sus scrofa]
 gi|307715909|gb|ADN88174.1| dicer [Sus scrofa]
          Length = 1915

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 628  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 684

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 685  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 745  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 804

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 805  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 864

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 865  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 924

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 925  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 982

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 983  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1042

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1043 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1100



 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 200/383 (52%), Positives = 248/383 (64%), Gaps = 57/383 (14%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1530 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588

Query: 962  -----------------------------PVTNPESKHLSDV------------------ 974
                                         P     S  L D+                  
Sbjct: 1589 AVKRTDRAQAACPARESFTSQQKTLSGGRPAAGSRSSGLKDLEYGCLKIPPRCMFDHPDA 1648

Query: 975  ------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYL 1028
                  L+ GF+ FE  INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYL
Sbjct: 1649 DRTLSHLISGFENFERKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYL 1708

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            IT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+ 
Sbjct: 1709 ITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQF 1768

Query: 1089 QAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VYY
Sbjct: 1769 QLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYY 1828

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+G
Sbjct: 1829 PMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVG 1887

Query: 1207 RNYCIAKCTAAKCALKHLKSAKP 1229
            R+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1888 RSYRIAKSAAARRALRSLKANQP 1910



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 56/113 (49%), Positives = 77/113 (68%), Gaps = 12/113 (10%)

Query: 744  PKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCT 803
            P++PG +   G+I    T S+ S  F  +LE        RLE +GDSFLK+AIT +L+CT
Sbjct: 1285 PRTPGPN--PGLILQALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYLFCT 1332

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            YP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1333 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVV 1385


>gi|5019620|dbj|BAA78691.1| helicase-MOI [Homo sapiens]
          Length = 1924

 Score =  398 bits (1023), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 629  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 685

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 686  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 745

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 746  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 805

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 806  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 865

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 866  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 925

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 926  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 983

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 984  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1043

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1044 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1101



 Score =  362 bits (930), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1536 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1594

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1595 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1654

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1655 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1714

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1715 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1774

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1775 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1834

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1835 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1893

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1894 GVGRSYRIAKSAAARRALRSLKANQP 1919



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1315 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1375 IFDPPVNWLPPGYVV 1389


>gi|410962933|ref|XP_003988023.1| PREDICTED: endoribonuclease Dicer [Felis catus]
          Length = 1893

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 628  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 684

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 685  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 745  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 804

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 805  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 864

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 865  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 924

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 925  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 982

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 983  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1042

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1043 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1100



 Score =  154 bits (389), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 72/115 (62%), Positives = 95/115 (82%), Gaps = 1/115 (0%)

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            VPKA+GD+FES+AGAIY+DSGMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE
Sbjct: 1775 VPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPE 1834

Query: 1175 NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1835 TAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1888



 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/204 (35%), Positives = 102/204 (50%), Gaps = 35/204 (17%)

Query: 676  FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINKLNTYG 734
            F +G QL   K  I V+ T   + P+  +  S++N   PS    +L+         N Y 
Sbjct: 1198 FCQGNQLSYCKQEIPVQPTT--SYPIQNL-YSYENQPKPSDECTLLS---------NKYL 1245

Query: 735  SVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQ---PDLENHT-GPSP--------- 781
                +  T   SP  +   G       P D     Q   P   + T GP+P         
Sbjct: 1246 DGNANTSTSDGSPAAATTPGTNEAVPAPRDGRASAQSPCPGYSSRTLGPNPGLILQALTL 1305

Query: 782  ---------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
                     +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K
Sbjct: 1306 SNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKK 1365

Query: 833  VFGESMIATKFEPRDNWLPPGYFV 856
                 M+ + F+P  NWLPPGY V
Sbjct: 1366 GLPSRMVVSIFDPPVNWLPPGYVV 1389



 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/166 (39%), Positives = 79/166 (47%), Gaps = 57/166 (34%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1536 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1594

Query: 962  --------------------------------PVTNPESKHLSDV--------------- 974
                                             V  P S  L D+               
Sbjct: 1595 VIKRTDREKAMCPARENFNSQQKALSGSRAAASVAGPRSSVLKDLEYGCLKIPPRCMFDH 1654

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                     L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+T
Sbjct: 1655 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTIT 1700


>gi|307133775|ref|NP_001182502.1| endoribonuclease Dicer isoform 2 [Homo sapiens]
 gi|300517087|gb|ADK25182.1| t-Dicer [Homo sapiens]
          Length = 1829

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 294/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  221 bits (562), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 122/248 (49%), Positives = 145/248 (58%), Gaps = 57/248 (22%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND 1093
            V+ Q E +
Sbjct: 1773 VQFQLEKN 1780



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|301770225|ref|XP_002920522.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
            [Ailuropoda melanoleuca]
          Length = 1931

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 864  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPLDFRYPNLDFGWK 1099



 Score =  353 bits (905), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 200/394 (50%), Positives = 250/394 (63%), Gaps = 68/394 (17%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1594 VIKRTDREKAVCPARENFSSQQKNLSGSRAPASAAGSRSSVLKDLEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV--------RLGFHHFFKHLSPG 1077
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV           +H +FK +SP 
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVXXXXXXXXXXDYHKYFKAVSPE 1773

Query: 1078 LHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
            L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSG
Sbjct: 1774 LFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSG 1833

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVE 1195
            MSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVE
Sbjct: 1834 MSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVE 1892

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            V GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1926



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYVV 1388


>gi|350855011|emb|CAZ36047.2| dicer-1, putative [Schistosoma mansoni]
          Length = 2319

 Score =  398 bits (1022), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 231/533 (43%), Positives = 305/533 (57%), Gaps = 90/533 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+ETIGDSFLK+ +T+ LY TYP  HEGKLSHLRS+ V N NL++LGK K     MI  
Sbjct: 1767 ERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGC 1826

Query: 842  KFEPRDNWLPPGYFV--PKYLETALI---EAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            KFEP +NW+PPGY+V   K L   +I   E+     +W+  +L + + L     ++  K 
Sbjct: 1827 KFEPHENWIPPGYYVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKI 1886

Query: 897  KCV--------DLDCTVDMNVQSVVPYNLVT-QHSIPDKSIADCVEALIGAYLIECGPRG 947
            K +        D +    ++ Q +    L+T Q +IPDKSIADCVEALIG YL   G R 
Sbjct: 1887 KPIENFPISEWDPNDPKVLHAQHLNNQYLITIQQAIPDKSIADCVEALIGCYLTTRGERS 1946

Query: 948  ALLFMSWLGLKVI-----------PPVTNPESKHLSD----------VLLDGFDKFEESI 986
            AL  M W G+  +            P + P+S +L             L+  FD+ E S+
Sbjct: 1947 ALRLMQWFGIDCLHKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWRFDELESSL 2006

Query: 987  NYRFKDKSYLLQAMTHASY------------------FLNTLTDCYQRLEFLGDAILDYL 1028
            NY FKD S L+QA TH SY                    +T  DCYQRLEFLGDA+LDY+
Sbjct: 2007 NYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFLGDAVLDYV 2066

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            ITR LYED + HSPG LTDLRSALVNN IFA+LAVR+G H +F+  SP L   I  FV+ 
Sbjct: 2067 ITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLHTIDVFVRY 2126

Query: 1089 QAEN-----DFTLN--------------QEYYLMEGECDEA-----------------ED 1112
            Q +      DF  N              +++    G+ + A                 +D
Sbjct: 2127 QKDVAKDDLDFITNESENQSSKPQHQTYEQHLSKSGKSNNANNTIPTNTGHLTTNRLSDD 2186

Query: 1113 IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELE 1172
            +E+PKAL D+FES+AGAI+LDS  SLDTVW+++Y IMK  IER +  +PKSP+R+LLELE
Sbjct: 2187 VEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLLELE 2246

Query: 1173 PENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            PE  +F +  ++ DG R+ V   V GKG + G+GRNY +AK  AAK AL+ L+
Sbjct: 2247 PEGTKFERARRMVDG-RISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALRVLR 2298



 Score =  126 bits (316), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 106/193 (54%), Gaps = 25/193 (12%)

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F F   +F +AVV P YRN  +P Y+YVA I  ++ P S FPS  + ++ F  YY  KY 
Sbjct: 1263 FEFRMEEFVNAVVTPGYRNLDQPQYYYVAIIRNDMSPLSPFPS--DKFRNFAAYYINKYN 1320

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVN------------------RKGINLATTSEET 395
              I    QPLLDVD T  RLN L PRY+N                   K  N+ T  +  
Sbjct: 1321 ALITTNNQPLLDVDLTVLRLNLLIPRYMNIYGHNNTNANDNNGDINNSKSNNVYTHKQYY 1380

Query: 396  RREIR-----ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            +++       E L  KQLLVPELC  H FPAS+WRK+V +PSILYRL  LLLA+E+R  +
Sbjct: 1381 QQQNHDDHQGEDLTNKQLLVPELCFRHSFPASVWRKAVCIPSILYRLEHLLLAEELRHRI 1440

Query: 451  ASEIGLGKVILDE 463
            A E  LG   L E
Sbjct: 1441 ACETNLGCAYLPE 1453



 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 90/363 (24%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-----------------------IITISEIKEDDS 37
            +  AI I+N+YCARLPSD  T L P                         ++ +++ D +
Sbjct: 811  LSKAINIINQYCARLPSDYITNLTPKWYWKIFPQPQGFTPSSTGPGSTCGSLKDLQPDGT 870

Query: 38   I-MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEF 96
              ++ C +RLPINS +K ++ G  M  K LA   AA  A  +LY   E+D+    + +E 
Sbjct: 871  FNLYQCVLRLPINSSVKETIVGEPMVCKKLAKYSAAFNAIHLLYLSGEMDSKWELINRET 930

Query: 97   -------------INLYENTEPVVPKT-------PEIETYPD------------------ 118
                         + L     P+  K+         I++  D                  
Sbjct: 931  NPMHHLTSENYGNLKLSSQHSPMKYKSFSSLNGSANIDSESDYGDYASSIGCCESADDEG 990

Query: 119  --------STKRRQFYHKRMASCFTNCRPSVNTPC--YLYAVKMKLTCPIPDEQNKRGRK 168
                    + KRRQ+Y+++  +  +NC P  N P   YLY + M L  P  ++Q  RGR 
Sbjct: 991  EMKSNIQNTVKRRQYYYRKFPTQISNCLPQPNEPSSNYLYYIDMHLVKPFAEQQYLRGRV 1050

Query: 169  IHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS-IELID--------------KNV 213
             H PEN P G  +LTTK +  +  FPIF+R GE ++  IEL                +  
Sbjct: 1051 CHHPENEPIGFGLLTTKPLHHIPIFPIFSRSGEEKIRFIELWSPKSNYQFNDQYLPIQGP 1110

Query: 214  VLSEENLSNTLIFMDYLFTKVLKLKKYLML-FDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
            +L++E +   + F   LF +VL+ +K  +L F+ + +     +VP   D+    IDW F+
Sbjct: 1111 ILTQEQIDRLIKFHRILFQEVLRFEKDSVLEFNFHKAYLQVLVVPARRDT--CSIDWDFI 1168

Query: 273  TLI 275
             L+
Sbjct: 1169 NLV 1171


>gi|149636857|ref|XP_001510982.1| PREDICTED: endoribonuclease Dicer-like [Ornithorhynchus anatinus]
          Length = 1921

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDS---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  N  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDIEK--SEARTGIPSTQYTKETPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSP--EYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A + G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVQSLPADFRYPNLDFGWK 1099



 Score =  362 bits (929), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 216/469 (46%), Positives = 277/469 (59%), Gaps = 88/469 (18%)

Query: 821  SNYNLFKLGKQKVFGESMIATKFEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLS 878
            SNY  +K+ K+   G    ++ F+  D  +W    Y  P     A+ E  F    WN   
Sbjct: 1476 SNYE-WKMPKKAALGNVQFSSDFDDFDYSSWDAMCYLDP---SKAVEEDDFVVGFWN--- 1528

Query: 879  LPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938
             P+                  + +C +D   QS+  Y+L T+  I DKSIADCVEAL+G 
Sbjct: 1529 -PS------------------EENCGIDTGKQSI-SYDLHTEQCIADKSIADCVEALLGC 1568

Query: 939  YLIECGPRGALLFMSWLGLKVIPPV--------------------------------TNP 966
            YL  CG R A LF+  LGLKV+P +                                TN 
Sbjct: 1569 YLTSCGERAAQLFLCSLGLKVLPVIKKTEWESTLSPSTQSFNDQPRNLLTNYAPASTTNT 1628

Query: 967  ESKHLSDV------------------------LLDGFDKFEESINYRFKDKSYLLQAMTH 1002
            +S    D+                        L+ GF+ FE  INY FK+K+YLLQA TH
Sbjct: 1629 QSSFYKDMEYGCLKIPPRCMFDHPDAEKTLIHLISGFENFERKINYNFKNKAYLLQAFTH 1688

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            ASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLA
Sbjct: 1689 ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA 1748

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALG 1120
            V+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+G
Sbjct: 1749 VKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 1808

Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK 1180
            D+FES+AGAIY+DSGMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS 
Sbjct: 1809 DIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSP 1868

Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1869 AERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388


>gi|395827764|ref|XP_003787065.1| PREDICTED: endoribonuclease Dicer isoform 1 [Otolemur garnettii]
 gi|395827766|ref|XP_003787066.1| PREDICTED: endoribonuclease Dicer isoform 2 [Otolemur garnettii]
          Length = 1921

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 625  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIIGPP 681

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 682  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 741

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 742  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 801

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 802  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 861

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 862  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 921

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 922  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 979

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 980  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1039

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1040 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1097



 Score =  323 bits (829), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 168/279 (60%), Positives = 213/279 (76%), Gaps = 6/279 (2%)

Query: 956  GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            G   IPP     +P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TD
Sbjct: 1639 GCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITD 1698

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK
Sbjct: 1699 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1758

Query: 1073 HLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAI
Sbjct: 1759 AVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            Y+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +V
Sbjct: 1819 YMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KV 1877

Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            RVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1878 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1311 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1371 IFDPPVNWLPPGYIV 1385



 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 35/60 (58%), Positives = 42/60 (70%), Gaps = 1/60 (1%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1532 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590


>gi|296475171|tpg|DAA17286.1| TPA: endoribonuclease Dicer [Bos taurus]
          Length = 1922

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 626  INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 682

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 683  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 743  KRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 803  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 863  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 923  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 980

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 981  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1098



 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1594 VIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            PE+      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1773

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1774 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1833

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE  +FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1834 VYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKFSPAERTYDG-KVRVTVEVVGKGKFK 1892

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 GVGRSYRIAKSAAARRALRSLKANQP 1918



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            +++N   PS    +L+         N Y     +  T   SP  +   G       P D 
Sbjct: 1224 NYENQPKPSDECTLLS---------NKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDR 1274

Query: 766  SFDFQ---PDLENHT-GPSP------------------KRLETIGDSFLKYAIT-IFLYC 802
            +   Q   P   + T GP+P                  +RLE +GDSFLK+AIT + L  
Sbjct: 1275 TASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSA 1334

Query: 803  TYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
               + HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  N LPPGY V
Sbjct: 1335 LILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNGLPPGYVV 1388


>gi|42733596|ref|NP_976235.1| endoribonuclease Dicer [Bos taurus]
 gi|257051053|sp|Q6TUI4.3|DICER_BOVIN RecName: Full=Endoribonuclease Dicer
 gi|38679195|gb|AAR26432.1| dicer [Bos taurus]
          Length = 1923

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 626  INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 682

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 683  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 743  KRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 803  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 863  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 923  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 980

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 981  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1098



 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1594 VIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            PE+      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1773

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1774 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1833

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE  +FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1834 VYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKFSPAERTYDG-KVRVTVEVVGKGKFK 1892

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 GVGRSYRIAKSAAARRALRSLKANQP 1918



 Score = 82.8 bits (203), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/174 (33%), Positives = 83/174 (47%), Gaps = 32/174 (18%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            +++N   PS    +L+         N Y     +  T   SP  +   G       P D 
Sbjct: 1224 NYENQPKPSDECTLLS---------NKYLDGNANTSTSDGSPVTAAVPGTTETGEAPPDR 1274

Query: 766  SFDFQ---PDLENHT-GPSP------------------KRLETIGDSFLKYAIT-IFLYC 802
            +   Q   P   + T GP+P                  +RLE +GDSFLK+AIT + L  
Sbjct: 1275 TASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSA 1334

Query: 803  TYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
               + HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  N LPPGY V
Sbjct: 1335 LILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNGLPPGYVV 1388


>gi|194225335|ref|XP_001496219.2| PREDICTED: endoribonuclease Dicer [Equus caballus]
          Length = 1785

 Score =  397 bits (1021), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 293/478 (61%), Gaps = 8/478 (1%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 491 VNTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 547

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
           M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 548 MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 607

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
           KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 608 KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 667

Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
           ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 668 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 727

Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
            + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 728 ALEFKPADADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 787

Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
              ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 788 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 845

Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
           NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 846 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 905

Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
           P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 906 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 963



 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 251/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI- 960
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+ 
Sbjct: 1397 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1455

Query: 961  ------------PPVTN------------------------------------------- 965
                        PP  N                                           
Sbjct: 1456 VIKRTDREKGLCPPRENFSSQQKNLSGGWAAASAASSRSSVCKDLEYGCLKIPPRCMFDH 1515

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1516 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1575

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1576 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1635

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1636 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1695

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1696 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1754

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1755 GVGRSYRIAKSAAARRALRSLKANQP 1780



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1178 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1237

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1238 IFDPPVNWLPPGYVV 1252


>gi|440907259|gb|ELR57423.1| Endoribonuclease Dicer [Bos grunniens mutus]
          Length = 1922

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 626  INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 682

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 683  MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 743  KRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 803  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 863  ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 923  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 980

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 981  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1098



 Score =  362 bits (929), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 251/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKAMCPTRENFTSQQKNLSGSRAAASGAGYRASVLKDLEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 63/173 (36%), Positives = 89/173 (51%), Gaps = 31/173 (17%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            +++N   PS    +L+         N Y     +  T   SP  +   G       P D 
Sbjct: 1224 NYENQPKPSDECTLLS---------NKYLDGNANTSTSDGSPVTAAVPGTAETGEAPPDR 1274

Query: 766  SFDFQ---PDLENHT-GPSP------------------KRLETIGDSFLKYAITIFLYCT 803
            +   Q   P   + T GP+P                  +RLE +GDSFLK+AIT +L+CT
Sbjct: 1275 TASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            YP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVV 1387


>gi|348554455|ref|XP_003463041.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Cavia
            porcellus]
          Length = 1929

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 215/478 (44%), Positives = 292/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIIGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  N PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPNQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I +    +   FVF 
Sbjct: 864  ALEFKPIDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPNTKYSKETPFVFK 923

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 924  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 981

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 982  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   A + G+G   L     +P  +FGWK
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAGDAGVGVRSLPADFRYPNLDFGWK 1099



 Score =  360 bits (923), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1541 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1599

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1600 VIKRTGREKALCPARENFSSQQKSLSGSCASAAAAGSRSSACKDLEYGCLKIPPRCMFDH 1659

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1660 PDADKTLTHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1719

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1720 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1779

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1780 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1839

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1840 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1898

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1899 GVGRSYRIAKSAAARRALRSLKANQP 1924



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|426248555|ref|XP_004018028.1| PREDICTED: endoribonuclease Dicer [Ovis aries]
          Length = 1922

 Score =  397 bits (1020), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 216/478 (45%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  VNRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 626  INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 682

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 683  MSCIRLAERVVALICCERLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 743  KRRQCYPKAIPECLRESYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 803  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 863  ALEFKPADADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 923  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 980

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 981  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK 1098



 Score =  362 bits (930), Expect = 6e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 251/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1593 VIKRTDREKAMCPTRENFTSQQKNLSGSRTAASGAGYRASVLKDLEYGCLKIPPRCMFDH 1652

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1653 PDADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1712

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1713 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1772

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1773 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1832

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1833 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1891

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1892 GVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 62/173 (35%), Positives = 88/173 (50%), Gaps = 31/173 (17%)

Query: 706  SFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDF 765
            +++N   PS    +L+         N Y     +  T   SP  +   G       P D 
Sbjct: 1224 NYENQPKPSDECTLLS---------NKYLDGNANTSTSDGSPVTAAVPGTTEAGEAPPDR 1274

Query: 766  SFDFQPDLENHT----GPSP------------------KRLETIGDSFLKYAITIFLYCT 803
            +   Q     H+    GP+P                  +RLE +GDSFLK+AIT +L+CT
Sbjct: 1275 TASEQSPSPGHSSRTLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCT 1334

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            YP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1335 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVV 1387


>gi|395504573|ref|XP_003756622.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer [Sarcophilus
            harrisii]
          Length = 1924

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ ++ G  
Sbjct: 628  INTAIGHINRYCARLPSDPFTHLAPKCKTRELSDG---TFYSTLYLPINSPLRAAIVGPP 684

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 685  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  N  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 745  KRRQCYPKAIPECLRNSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 804

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 805  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 864

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V+DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 865  ALEFKPTEADSAYCVLPLNVVNDSSTLDIDFKFMDDIEK--SEARTGIPSTQYTKETPFI 922

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 923  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSP--EYETFAEYYKTKYNLD 980

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 981  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1040

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A + G+G   L     +P  +FGWK
Sbjct: 1041 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVKSLPADFRYPNLDFGWK 1100



 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1536 NCGIDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1594

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP      
Sbjct: 1595 VIKRSDWENTLYPSKDNFNSQQKNLSVNFASISVANLQSSLYKDLEYGCLKIPPRCMFDY 1654

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P+++   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1655 PDAEKTLNHLISGFENFEKKINYNFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1714

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1715 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1774

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1775 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1834

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1835 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1893

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1894 GVGRSYRIAKSAAARRALRSLKANQP 1919



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1317 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1376

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1377 IFDPPVNWLPPGYIV 1391


>gi|326920976|ref|XP_003206741.1| PREDICTED: endoribonuclease Dicer-like [Meleagris gallopavo]
          Length = 1921

 Score =  397 bits (1019), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDH---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKEMPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A++ G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK 1099



 Score =  363 bits (931), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1533 NCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1591

Query: 962  PV---------------TNPESKHLS---------------------------------- 972
             +                N E K+LS                                  
Sbjct: 1592 VIKKSDWESTLCPTGENCNSEQKNLSPNSVSACIVNSEPFLYKDLEYGCLKIPPRCMFDH 1651

Query: 973  -------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1652 PDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1711

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1712 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1771

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1772 VQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1831

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1832 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1890

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1891 GVGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388


>gi|94957752|ref|NP_001035555.1| endoribonuclease Dicer [Gallus gallus]
 gi|257051054|sp|Q25BN1.3|DICER_CHICK RecName: Full=Endoribonuclease Dicer
 gi|90074858|dbj|BAE87103.1| Dicer protein [Gallus gallus]
          Length = 1921

 Score =  396 bits (1018), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDH---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKEMPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A++ G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK 1099



 Score =  363 bits (932), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 230/515 (44%), Positives = 294/515 (57%), Gaps = 95/515 (18%)

Query: 781  PKRLETIGDSFLKYA------ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            PK      D FL+Y       I   L  +   V +  LSH  +   SNY  +K  K+   
Sbjct: 1431 PKEETDFEDDFLEYDQEHIKFIDSMLMGSGAFVKKISLSHFSTTD-SNYE-WKAPKKSSL 1488

Query: 835  GESMIATKFEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            G    ++ F+  D  +W    Y  P     A+ E  F    WN    P+           
Sbjct: 1489 GNVPFSSDFDDFDYSSWDAMCYLDP---SKAVEEDDFVVGFWN----PS----------- 1530

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                   + +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+
Sbjct: 1531 -------EENCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFL 1582

Query: 953  SWLGLKVIPPV---------------TNPESKHLS------------------------- 972
              LGLKV+P +                N E K+LS                         
Sbjct: 1583 CSLGLKVLPVIKKTDWESTLCATGENCNSEQKNLSPNSVSACIVNSEPSLYKDLEYGCLK 1642

Query: 973  ----------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
                            + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQR
Sbjct: 1643 IPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQR 1702

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
            LEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP
Sbjct: 1703 LEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSP 1762

Query: 1077 GLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DS
Sbjct: 1763 ELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS 1822

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
            GMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTV
Sbjct: 1823 GMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTV 1881

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            EV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1882 EVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388


>gi|254281274|ref|NP_001156875.1| endoribonuclease Dicer [Taeniopygia guttata]
          Length = 1921

 Score =  396 bits (1017), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTWELPDH---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKEMPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSP--EYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A++ G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK 1099



 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 230/515 (44%), Positives = 294/515 (57%), Gaps = 95/515 (18%)

Query: 781  PKRLETIGDSFLKYA------ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            PK      D FL+Y       I   L  +   V +  LSH  +   SNY  +K  K+   
Sbjct: 1431 PKEETDFEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSHFSTTD-SNYE-WKAPKKSSM 1488

Query: 835  GESMIATKFEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            G    ++ F+  D  +W    Y  P     A+ E  F    WN    P+           
Sbjct: 1489 GNIQCSSDFDDFDYSSWDAMCYLDP---SKAVEEDDFVVGFWN----PS----------- 1530

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                   + +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+
Sbjct: 1531 -------EENCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFL 1582

Query: 953  SWLGLKVIPPV---------------TNPESKHLS------------------------- 972
              LGLKV+P +                N E K+LS                         
Sbjct: 1583 CSLGLKVLPVIKKTDWEGTLCATRENCNSEQKNLSPNSVAASVVNSEPSLCKDLEYGCLK 1642

Query: 973  ----------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
                            + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQR
Sbjct: 1643 IPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQR 1702

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
            LEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP
Sbjct: 1703 LEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSP 1762

Query: 1077 GLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DS
Sbjct: 1763 ELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS 1822

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
            GMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTV
Sbjct: 1823 GMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTV 1881

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            EV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1882 EVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916



 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388


>gi|327259078|ref|XP_003214365.1| PREDICTED: endoribonuclease Dicer-like isoform 1 [Anolis
            carolinensis]
          Length = 1918

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/480 (44%), Positives = 294/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ ++    F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDN---TFYSTLYLPINSPLRVSIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MGCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLKESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTARCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLDLITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFRPTDADSAYCVLPLNVVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKETPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGVKSLPTDFRYPNLDFGWK 1099



 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1530 NCGIDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588

Query: 962  PV--------------------------------TNPESKHLSDV--------------- 974
             +                                +N ES    D+               
Sbjct: 1589 VIKKIDWDSALYSHTEHFNSQQKHSSANCISVSLSNQESSRYKDLVYGCLKIPPRCMFDH 1648

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                     L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1649 PDAERTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1708

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1709 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1768

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW 
Sbjct: 1769 VQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWH 1828

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1829 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1887

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1888 GVGRSYRIAKSAAARRALRSLKANQP 1913



 Score =  110 bits (274), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 33/218 (15%)

Query: 658  NHINSKAEFVK---VIQDKLTFYEGQLEL-------IKNRIDVENTIKENQPVHIVRQSF 707
            N  N   + VK     +++L +Y  ++ +       I+N  + EN +K +    +  +  
Sbjct: 1182 NLANGNCDLVKQDLCQENQLNYYRQEIPIQPTTSCPIQNLYNSENQLKPSNECTLSNKYL 1241

Query: 708  DNASNPSKN-----TAILTEILENIN----KLNTYGSVEKDVKTEPKSPGKSCEHGIIRN 758
            D  +N S +      A+ T   +  N    ++N+  S      ++   P      G+I  
Sbjct: 1242 DGNANKSTSDGSPKIAVTTSASDACNLSKERMNSATSPSNGYSSKTLGPNP----GLILQ 1297

Query: 759  TSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSK 818
              T S+ S  F  +LE        RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK
Sbjct: 1298 ALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1347

Query: 819  QVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            +VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1348 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYIV 1385


>gi|22830885|dbj|BAC15765.1| double-strand-specific ribonuclease MDCR [Mus musculus]
          Length = 1906

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 214/478 (44%), Positives = 291/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M +  LA R+ A+  C  L+++ ELD  LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS++ L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  +E++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF 
Sbjct: 854  ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS     +TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PECETFAEYYKTKYNLDLT 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDH S RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHASSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFGYPNLDFGWK 1089



 Score =  362 bits (929), Expect = 7e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 251/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1520 NCGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1578

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 1579 VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 1638

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 1639 AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 1698

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 1699 LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 1758

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 1759 FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 1818

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 1819 YPMMQPLIEKFSANVPRSPVRELLEMEPETAEFSPAERTYDG-KVRVTVEVVGKGKFKGV 1877

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1878 GRSYRIAKSAAARRALRSLKANQP 1901



 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1303 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1362

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1363 IFDPPVNWLPPGYVV 1377


>gi|119602001|gb|EAW81595.1| Dicer1, Dcr-1 homolog (Drosophila), isoform CRA_a [Homo sapiens]
          Length = 1923

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 295/479 (61%), Gaps = 9/479 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMA-SCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            KRRQ Y K ++  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +  
Sbjct: 744  KRRQCYPKAVSIECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCF 803

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
             ILT K IP++  FP++TR GEV +SIEL     +LS + L        Y+F+ +L+L+K
Sbjct: 804  GILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEK 863

Query: 240  YLMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVF 296
              + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF
Sbjct: 864  PALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVF 923

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L +
Sbjct: 924  KLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDL 981

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC I
Sbjct: 982  TNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI 1041

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            HP PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 HPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK 1100



 Score =  363 bits (931), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1594 VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 1653

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1654 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1713

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1714 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1773

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 1774 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 1833

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1834 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1892

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1893 GVGRSYRIAKSAAARRALRSLKANQP 1918



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYVV 1388


>gi|440655799|gb|AGC22548.1| dicer [Ctenopharyngodon idella]
          Length = 1881

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 234/601 (38%), Positives = 332/601 (55%), Gaps = 26/601 (4%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+K      +  ++ LPINSPL+  VTG  
Sbjct: 613  INTAIGHINRYCARLPSDPFTHLAPKCKTVELKTGG---YRSTLFLPINSPLRVPVTGPT 669

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 670  MNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 729

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C   C P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 730  KRRQCYPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 789

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS E L        ++ +++L+L+K 
Sbjct: 790  ILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSAEQLELCTRLRQFILSRILRLEKP 849

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V DS  + +D+KFM  I +    + I +    ++  F+F 
Sbjct: 850  ALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIFK 909

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 910  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLS 967

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            N+ QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 968  NVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1027

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
            P PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P  +FGWK K
Sbjct: 1028 PIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWK-K 1086

Query: 478  KLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQE 537
             +  K       A     D  +   + + D    E C+  A                 Q 
Sbjct: 1087 SIDSKSFISCPSACMEDDDHCKHGSSSDSDHTAEESCSMEAS----------------QP 1130

Query: 538  NEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDD 597
             E     +   + + K E+Q V P  ++ T + + +  V C+  P +    SDD     D
Sbjct: 1131 PEGALPCENCNTPDEKLETQ-VLPVTDVQTLNKDKSNCVCCRNLPNSTWGDSDDLPHRHD 1189

Query: 598  L 598
            +
Sbjct: 1190 I 1190



 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 198/353 (56%), Positives = 252/353 (71%), Gaps = 27/353 (7%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C  D+  QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1526 NCGTDIGKQSIT-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1584

Query: 962  P-----------------------VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQ 998
            P                         +P+++   + L+ GF+ FE+ INY FK+K+YLLQ
Sbjct: 1585 PEKQSSGGSAELQYGWLKIPPRCMFDHPDAERTLNHLISGFENFEKKINYMFKNKAYLLQ 1644

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IF
Sbjct: 1645 AFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF 1704

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVP 1116
            ASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVP
Sbjct: 1705 ASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVP 1764

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA 1176
            KA+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A
Sbjct: 1765 KAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETA 1824

Query: 1177 RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            +FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1825 KFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1876



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387


>gi|449280710|gb|EMC87946.1| Endoribonuclease Dicer [Columba livia]
          Length = 1922

 Score =  394 bits (1013), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 214/481 (44%), Positives = 297/481 (61%), Gaps = 13/481 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDH---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFKPTEADSAYCVLPLNVVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKEMPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG-KVILDEKVEWPPFNFGW 474
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A++ G+G K +  +  ++P  +FGW
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRQYPNLDFGW 1099

Query: 475  K 475
            K
Sbjct: 1100 K 1100



 Score =  360 bits (925), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 228/515 (44%), Positives = 294/515 (57%), Gaps = 95/515 (18%)

Query: 781  PKRLETIGDSFLKYA------ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            PK      D FL+Y       I   L  +   V +  LSH  S   SNY  +K+ K+   
Sbjct: 1432 PKEETDFEDDFLEYDQEHIKFIDNMLMGSGAFVKKISLSHF-STTDSNYE-WKVPKKSSL 1489

Query: 835  GESMIATKFEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            G    ++ F+  D  +W    Y  P     A+ E  F    WN    P+           
Sbjct: 1490 GNVQFSSDFDDFDYSSWDAMCYLDP---SKAVEEDDFVVGFWN----PS----------- 1531

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                   + +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+
Sbjct: 1532 -------EENCGLDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFL 1583

Query: 953  SWLGLKV----------------------------------------------------- 959
              LGLKV                                                     
Sbjct: 1584 CSLGLKVLPVIKKTDWEGALCATRENCNSEQKNPSPNSFSASVANSEPSLYKDLEYGCLK 1643

Query: 960  IPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            IPP     +P+++   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQR
Sbjct: 1644 IPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQR 1703

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
            LEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP
Sbjct: 1704 LEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSP 1763

Query: 1077 GLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DS
Sbjct: 1764 ELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS 1823

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
            GMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTV
Sbjct: 1824 GMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTV 1882

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            EV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1883 EVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1917



 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 60/139 (43%), Positives = 83/139 (59%), Gaps = 10/139 (7%)

Query: 718  AILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHT 777
            A+ T   + IN        EK++ +   S       G+I    T S+ S  F  +LE   
Sbjct: 1261 AVTTSTSKAINLSKDRADTEKNLSSGYSSKTLGPNPGLILQALTLSNASDGF--NLE--- 1315

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
                 RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     
Sbjct: 1316 -----RLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSR 1370

Query: 838  MIATKFEPRDNWLPPGYFV 856
            M+ + F+P  NWLPPGY V
Sbjct: 1371 MVVSIFDPPVNWLPPGYIV 1389


>gi|281339672|gb|EFB15256.1| hypothetical protein PANDA_009266 [Ailuropoda melanoleuca]
          Length = 1917

 Score =  394 bits (1011), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 215/479 (44%), Positives = 294/479 (61%), Gaps = 9/479 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDG---TFYSTLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMA-SCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            KRRQ Y K ++  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +  
Sbjct: 744  KRRQCYPKAVSIECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCF 803

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
             ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K
Sbjct: 804  GILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEK 863

Query: 240  YLMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVF 296
              + F P  ++++Y ++P   V+DS  + ID+KFM  I +    + I      +   FVF
Sbjct: 864  PALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVF 923

Query: 297  DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L +
Sbjct: 924  KLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDL 981

Query: 357  QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
             NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC I
Sbjct: 982  TNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI 1041

Query: 417  HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            HP PASLWRK+V LPSILYRL+ LL A+E+R   AS+ G+G   L     +P  +FGWK
Sbjct: 1042 HPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPLDFRYPNLDFGWK 1100



 Score =  348 bits (894), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 198/386 (51%), Positives = 247/386 (63%), Gaps = 67/386 (17%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 1536 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1594

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 1595 VIKRTDREKAVCPARENFSSQQKNLSGSRAPASAAGSRSSVLKDLEYGCLKIPPRCMFDH 1654

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1655 PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1714

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLA       +FK +SP L  VI  F
Sbjct: 1715 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA-------YFKAVSPELFHVIDDF 1767

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 1768 VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 1827

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1828 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1886

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1887 GVGRSYRIAKSAAARRALRSLKANQP 1912



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1315 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1374

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1375 IFDPPVNWLPPGYVV 1389


>gi|387015528|gb|AFJ49883.1| Endoribonuclease Dicer-like isoform 1 [Crotalus adamanteus]
          Length = 1917

 Score =  393 bits (1010), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/480 (44%), Positives = 295/480 (61%), Gaps = 12/480 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ ++    F  ++ LPINSPL+ S+ G  
Sbjct: 627  INTAIGHINRYCARLPSDPFTHLAPKCKTRELLDN---TFYATLYLPINSPLRASIVGPP 683

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 684  MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +  P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 744  KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL   +  LS + L        Y+F+ +L+L+K 
Sbjct: 804  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSSFTLSLQMLELITRLHQYIFSHILRLEKP 863

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V  S  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 864  ALEFRPTDADSAYCVLPLNVVDGSSTLDIDFKFMENIEK--SEARTGIPSTQYTKETPFI 921

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 922  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLD 979

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 980  LTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1039

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P  +FGWK
Sbjct: 1040 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGVKSLPIDFRYPNLDFGWK 1099



 Score =  360 bits (924), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 198/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1529 NCGIDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1587

Query: 962  PV--------------------------------TNPESKHLSDV--------------- 974
             +                                 N E+ H  D+               
Sbjct: 1588 VIKKTEWDNVLCSYRDHFNNQQKHSSVNCISATLANQETSHYKDLVYGCLKIPPRCMFDH 1647

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                     L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1648 PDAETTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1707

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1708 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1767

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DS MSL+ VW+
Sbjct: 1768 VQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSEMSLEMVWQ 1827

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1828 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1886

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1887 GVGRSYRIAKSAAARRALRSLKANQP 1912



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1312 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1371

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1372 IFDPPVNWLPPGYIV 1386


>gi|238814324|ref|NP_001154925.1| endoribonuclease Dicer [Danio rerio]
 gi|229485378|sp|Q6TV19.2|DICER_DANRE RecName: Full=Endoribonuclease Dicer
          Length = 1865

 Score =  393 bits (1009), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 213/478 (44%), Positives = 292/478 (61%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M+ AI  VNRYCARLPSD FT LAP     E+   ++  +  ++ LPINSPL+  VTG  
Sbjct: 613  MNTAIGHVNRYCARLPSDPFTHLAPKCKTVEM---NTGGYRSTLFLPINSPLRVPVTGPV 669

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 670  MNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 729

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ   K +  C   C P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 730  KRRQCSPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 789

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS E L        Y+F+ +L+L+K 
Sbjct: 790  ILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEKP 849

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
             + F P  ++++Y ++P   V DS  + +D+KFM  I +    + I +    ++  F+F 
Sbjct: 850  ALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIFK 909

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 910  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLS 967

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            N+ QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 968  NVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1027

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P  +FGWK
Sbjct: 1028 PIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWK 1085



 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/353 (56%), Positives = 250/353 (70%), Gaps = 27/353 (7%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C  D+  QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1510 NCGTDIGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1568

Query: 962  P-----------------------VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQ 998
            P                         +P+++   + L+ GF  FE  INY FK+K+YLLQ
Sbjct: 1569 PEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQ 1628

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IF
Sbjct: 1629 AFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF 1688

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVP 1116
            ASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVP
Sbjct: 1689 ASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVP 1748

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA 1176
            KA+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A
Sbjct: 1749 KAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETA 1808

Query: 1177 RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            +FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1809 KFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1860



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1295 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1354

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1355 IFDPPVNWLPPGYVV 1369


>gi|281427125|ref|NP_001163918.1| dicer 1, ribonuclease type III [Xenopus laevis]
 gi|261826170|gb|ACX94846.1| truncated double-stranded RNA-specific endoribonuclease type III
            [Xenopus laevis]
          Length = 1795

 Score =  390 bits (1002), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 220/535 (41%), Positives = 310/535 (57%), Gaps = 12/535 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     +  ++ LPINSPL+  + G  
Sbjct: 619  INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGP---YHSTLYLPINSPLRAPIVGPP 675

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R  A+  C+ L+E+ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 676  MNCARLAERAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 735

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  N  P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 736  KRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 795

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      L+ E L        Y+F+ +L+L+K 
Sbjct: 796  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFSLNLEQLELITRLHQYIFSHILRLEKP 855

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++ +Y ++P   V+DS  + ID+KF+  I +  ++    IP  +      F+
Sbjct: 856  ALEFKPTVADCAYCVLPLNVVNDSGTLDIDFKFVEDIEK--SEARTGIPNTQYSAEGPFI 913

Query: 296  FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
            F    ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L 
Sbjct: 914  FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYDLD 971

Query: 356  IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
            + NL QPLLDVD+TS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC 
Sbjct: 972  LTNLNQPLLDVDYTSSRLNLLTPRHLNQKGKALPLSSAERRKAKWESLQNKQILVPELCA 1031

Query: 416  IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            IHP PASLWRK+V LPSILYRL+ LL A+E+R   A + G+G   L E   +P  +FGWK
Sbjct: 1032 IHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVKSLPEDFRYPNLDFGWK 1091

Query: 476  MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
                 + +  +   +      D  ++ T   DSA +     +   ++ D+    C
Sbjct: 1092 RSIDGKTFISNQSFSAVERESDCRLSITTSPDSATSSAAHHVMYTQMNDQMSVNC 1146



 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 122/228 (53%), Positives = 143/228 (62%), Gaps = 42/228 (18%)

Query: 905  VDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP--- 961
             D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  L LKV+P   
Sbjct: 1511 ADAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLDLKVLPEVR 1569

Query: 962  -PVTN-------------------------------------PESKHLSDVLLDGFDKFE 983
             PVTN                                     PE++   D L+ GF+ FE
Sbjct: 1570 KPVTNTSTRGNYSLDGRTNSELSCKGIEYGYLKIPPRCMFEHPEAEKTLDHLISGFENFE 1629

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
            + INY+FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG
Sbjct: 1630 KKINYQFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPG 1689

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
             LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+ Q E
Sbjct: 1690 VLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLE 1737



 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 60/75 (80%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE  GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1290 ERLEMPGDSFLKHAITTYLFCTYPDSHEGRLSYMRSKKVSNCNLYRLGKKKGSPSRMVVS 1349

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1350 IFDPPVNWLPPGYIV 1364


>gi|254281220|ref|NP_001123390.2| endoribonuclease Dicer [Xenopus (Silurana) tropicalis]
 gi|238064965|sp|B3DLA6.2|DICER_XENTR RecName: Full=Endoribonuclease Dicer
 gi|169261418|gb|ACA52289.1| endoribonuclease [Xenopus (Silurana) tropicalis]
          Length = 1893

 Score =  390 bits (1001), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 222/538 (41%), Positives = 312/538 (57%), Gaps = 15/538 (2%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E  +    ++  ++ LPINSPL+  + G  
Sbjct: 618  INTAIGHINRYCARLPSDPFTHLAPKCKTREFPDG---LYRSTLYLPINSPLRAPIVGPP 674

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R  A+  C+ L+E+ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 675  MNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 734

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  N  P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 735  KRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 794

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      L+ E L        Y+F+ +L+L+K 
Sbjct: 795  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLNLEQLELITRLHQYIFSHILRLEKP 854

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE---RENFV 295
             + F P  ++ +Y ++P   V+DS  + ID+KF+  I +  ++    IP  +      F+
Sbjct: 855  ALEFKPTVADCAYCVLPLNVVNDSGTLDIDFKFVEDIEK--SEARTGIPNTQYSAESPFI 912

Query: 296  FDESKFRDAVVMP---WYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
            F    ++DAV++P    YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY
Sbjct: 913  FKLEDYQDAVIIPRQVIYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKY 970

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             L + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPE
Sbjct: 971  NLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPE 1030

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            LC IHP PASLWRK+V LPSILYRL+ LL A+E+R   A + G+G   L +   +P  +F
Sbjct: 1031 LCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVKSLPDDFRYPNLDF 1090

Query: 473  GWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
            GWK     + +  +   ++     D  +N T   DSA +     +  ++I D+    C
Sbjct: 1091 GWKRSIDSKTFISNQSSSSVESESDCRLNKTTAPDSAASSAANSVIYMQINDQMSVNC 1148



 Score =  359 bits (922), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 200/380 (52%), Positives = 249/380 (65%), Gaps = 57/380 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C  D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1508 NCGADAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1566

Query: 962  P----VTN-------------------------------------------------PES 968
                 VTN                                                 P++
Sbjct: 1567 EVRKLVTNTNVISASSSYQNSTRDNCTLTARTNTDLSSCKGIDYGYLKIPPRCMFEHPDA 1626

Query: 969  KHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYL 1028
            +   D L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYL
Sbjct: 1627 EKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYL 1686

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            IT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+ 
Sbjct: 1687 ITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQF 1746

Query: 1089 QAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW VYY
Sbjct: 1747 QLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWHVYY 1806

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+G
Sbjct: 1807 PMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVG 1865

Query: 1207 RNYCIAKCTAAKCALKHLKS 1226
            R+Y IAK  AA+ AL+ LK+
Sbjct: 1866 RSYRIAKSAAARRALRSLKA 1885



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 69/173 (39%), Positives = 99/173 (57%), Gaps = 27/173 (15%)

Query: 690  VENTIKENQPV---HIVRQSFDNASNPSKN---TAILTEILENINKLNTYGSVEKDVKTE 743
            V+N  KENQP+     +  S  N S P+ +   +   +++  +    N + S     KT 
Sbjct: 1213 VQNLPKENQPILKECTLSNSDGNVSKPTSDECPSTCTSDMHYDSGLSNRHSS-----KTL 1267

Query: 744  PKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCT 803
              +PG      +I    T S+ S  F  +LE        RLE +GDSFLK+AIT +L+CT
Sbjct: 1268 GPNPG------LILQALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYLFCT 1311

Query: 804  YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            YP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1312 YPDAHEGRLSYMRSKKVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIV 1364


>gi|327259080|ref|XP_003214366.1| PREDICTED: endoribonuclease Dicer-like isoform 2 [Anolis
            carolinensis]
          Length = 1915

 Score =  389 bits (998), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 214/487 (43%), Positives = 294/487 (60%), Gaps = 19/487 (3%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ ++    F  ++ LPINSPL+ S+ G  
Sbjct: 617  INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDN---TFYSTLYLPINSPLRVSIVGPP 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA R+ A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MGCTRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C     P  + PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLKESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTARCFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS + L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLDLITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN---FV 295
             + F P  ++++Y ++P   V DS  + ID+KFM  I +  ++    IP  +      F+
Sbjct: 854  ALEFRPTDADSAYCVLPLNVVDDSSTLDIDFKFMEDIEK--SEARTGIPSTQYTKETPFI 911

Query: 296  FDESKFRDAVVMP-------WYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
            F    ++DAV++P        YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY
Sbjct: 912  FKLEDYQDAVIIPRRYLPLSRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYY 969

Query: 349  SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
              KY L + NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+
Sbjct: 970  KTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQI 1029

Query: 409  LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP 468
            LVPELC IHP PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P
Sbjct: 1030 LVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGVKSLPTDFRYP 1089

Query: 469  PFNFGWK 475
              +FGWK
Sbjct: 1090 NLDFGWK 1096



 Score =  361 bits (927), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 199/386 (51%), Positives = 250/386 (64%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C +D   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 1527 NCGIDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1585

Query: 962  PV--------------------------------TNPESKHLSDV--------------- 974
             +                                +N ES    D+               
Sbjct: 1586 VIKKIDWDSALYSHTEHFNSQQKHSSANCISVSLSNQESSRYKDLVYGCLKIPPRCMFDH 1645

Query: 975  ---------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                     L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 1646 PDAERTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 1705

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 1706 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 1765

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW 
Sbjct: 1766 VQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWH 1825

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 1826 VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 1884

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1885 GVGRSYRIAKSAAARRALRSLKANQP 1910



 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 73/218 (33%), Positives = 114/218 (52%), Gaps = 33/218 (15%)

Query: 658  NHINSKAEFVK---VIQDKLTFYEGQLEL-------IKNRIDVENTIKENQPVHIVRQSF 707
            N  N   + VK     +++L +Y  ++ +       I+N  + EN +K +    +  +  
Sbjct: 1179 NLANGNCDLVKQDLCQENQLNYYRQEIPIQPTTSCPIQNLYNSENQLKPSNECTLSNKYL 1238

Query: 708  DNASNPSKN-----TAILTEILENIN----KLNTYGSVEKDVKTEPKSPGKSCEHGIIRN 758
            D  +N S +      A+ T   +  N    ++N+  S      ++   P      G+I  
Sbjct: 1239 DGNANKSTSDGSPKIAVTTSASDACNLSKERMNSATSPSNGYSSKTLGPNP----GLILQ 1294

Query: 759  TSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSK 818
              T S+ S  F  +LE        RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK
Sbjct: 1295 ALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1344

Query: 819  QVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            +VSN NL++LGK+K     M+ + F+P  NWLPPGY V
Sbjct: 1345 KVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYIV 1382


>gi|348544424|ref|XP_003459681.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like
            [Oreochromis niloticus]
          Length = 1917

 Score =  386 bits (991), Expect = e-104,   Method: Compositional matrix adjust.
 Identities = 210/478 (43%), Positives = 286/478 (59%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E+ +     F  ++ LPINSPL+  V G  
Sbjct: 628  INTAIGHINRYCARLPSDPFTHLAPKCKTVEMGDG---YFQSTLYLPINSPLRVPVKGPV 684

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 685  MNCARLAEKAVALVCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 744

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +C        YLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 745  KRRQCYPKAIPECLCDCYAVPEQSYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 804

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      L+   L        Y+F+ +L+L+K 
Sbjct: 805  ILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTTAQLDLITRLHQYIFSHILRLEKP 864

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN-FVFD 297
             + F P  ++++Y ++P   V DS  + +D+KFM  I +          +  ++N F F 
Sbjct: 865  ALEFMPTMADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIPTTQYTKQNPFTFK 924

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 925  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLS 982

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 983  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1042

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   ASE G+G   L     +P  +FGWK
Sbjct: 1043 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGVQTLPPDFRYPNLDFGWK 1100



 Score =  365 bits (936), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 196/363 (53%), Positives = 252/363 (69%), Gaps = 37/363 (10%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C  ++  QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A +F+  LGLKV  
Sbjct: 1552 NCGTELGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLP 1610

Query: 960  ----------------------------IPP---VTNPESKHLSDVLLDGFDKFEESINY 988
                                        IPP   + +P+++   + L+ GF+ FE+ INY
Sbjct: 1611 LERGTLTGAVAQVHTHTQVADLCYGWLKIPPRCMLDHPDAERTLNHLISGFENFEKKINY 1670

Query: 989  RFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
             FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDL
Sbjct: 1671 TFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDL 1730

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGE 1106
            RSALVNN IFASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E +
Sbjct: 1731 RSALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEED 1790

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
             ++ EDIEVPKA+GD+FES+AGAIY+DS MSL+TVW+VYY +M+  IE+ S +VP+SP+R
Sbjct: 1791 EEKEEDIEVPKAMGDIFESLAGAIYMDSRMSLETVWQVYYPMMRPLIEKFSANVPRSPVR 1850

Query: 1167 ELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            ELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+
Sbjct: 1851 ELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 1909

Query: 1227 AKP 1229
             +P
Sbjct: 1910 NQP 1912



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1307 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1366

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1367 IFDPPVNWLPPGYVV 1381


>gi|37266499|gb|AAQ90464.1| Dicer1 [Danio rerio]
          Length = 1243

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 212/479 (44%), Positives = 291/479 (60%), Gaps = 21/479 (4%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           M+ AI  VNRYCARLPSD FT LAP     E+   ++  +  ++ LPINSPL+  VTG  
Sbjct: 2   MNTAIGHVNRYCARLPSDPFTHLAPKCKTVEM---NTGGYRSTLFLPINSPLRVPVTGPV 58

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
           M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 59  MNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 118

Query: 121 KRRQFYHKRMASCFTNCRP-SVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
           KRRQ            C P +V  PCYLY + M LT P+PDE N R RK++PPE++ +  
Sbjct: 119 KRRQ------------CSPKAVKQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCF 166

Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
            ILT K IP++  FP++TR GEV +SIEL      LS E L        Y+F+ +L+L+K
Sbjct: 167 GILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEK 226

Query: 240 YLMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVF 296
             + F P  ++++Y ++P   V DS  + +D+KFM  I +    + I +    ++  F+F
Sbjct: 227 PALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARIGIPNTQYTKQNPFIF 286

Query: 297 DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L +
Sbjct: 287 KLEDYQDAVIIPKYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDL 344

Query: 357 QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI 416
            N+ QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC I
Sbjct: 345 SNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI 404

Query: 417 HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
           HP PASLWRK+V LPSILYRL+ LL A+E+R+  A + G+G   L     +P  +FGWK
Sbjct: 405 HPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWK 463



 Score =  373 bits (958), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 198/353 (56%), Positives = 250/353 (70%), Gaps = 27/353 (7%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C  D+  QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 888  NCGTDIGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 946

Query: 962  P-----------------------VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQ 998
            P                         +P+++   + L+ GF  FE  INY FK+K+YLLQ
Sbjct: 947  PEKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQ 1006

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IF
Sbjct: 1007 AFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIF 1066

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVP 1116
            ASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVP
Sbjct: 1067 ASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVP 1126

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA 1176
            KA+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A
Sbjct: 1127 KAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETA 1186

Query: 1177 RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            +FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1187 KFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1238



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 673 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 732

Query: 842 KFEPRDNWLPPGYFV 856
            F+P  NWLPPGY V
Sbjct: 733 IFDPPVNWLPPGYVV 747


>gi|432936630|ref|XP_004082201.1| PREDICTED: endoribonuclease Dicer-like [Oryzias latipes]
          Length = 1890

 Score =  379 bits (974), Expect = e-102,   Method: Compositional matrix adjust.
 Identities = 208/478 (43%), Positives = 281/478 (58%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E        F  ++ LPINSPL+  + G  
Sbjct: 617  VNTAIGHINRYCARLPSDPFTHLAPKCKTVETGNG---RFQSTLYLPINSPLRVPIKGPT 673

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 674  MHCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +         YLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 734  KRRQCYPKAIPECLRDSYAVPEQTYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRTFG 793

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      LS   L        Y+F+ +L+L+K 
Sbjct: 794  ILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLSAAQLDLITRLHQYIFSHILRLEKP 853

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN-FVFD 297
             + F P  ++++Y ++P   V DS  + +D+KFM  I +          +  ++N F F 
Sbjct: 854  ALEFKPTVADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIPTTKYTKQNPFTFK 913

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T + P S FPS    Y+TF EYY  KY L + 
Sbjct: 914  LEDYQDAVIIPRYRNFDQPHRFYVADVYTYLTPLSKFPS--PEYETFAEYYKTKYNLDLS 971

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 972  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   A E G+G   L     +P  +FGWK
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTACEAGVGIQTLPPDFRYPNLDFGWK 1089



 Score =  368 bits (944), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 196/362 (54%), Positives = 252/362 (69%), Gaps = 36/362 (9%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C  ++  QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A +F+  LGLKV  
Sbjct: 1526 NCGTELGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLP 1584

Query: 960  ---------------------------IPP---VTNPESKHLSDVLLDGFDKFEESINYR 989
                                       IPP   + +P+++     L+ GF+ FE+ INY 
Sbjct: 1585 SEPGTSRASKAPSSRTSAADLSYGWLKIPPRCMLAHPDAERTLQHLISGFENFEKKINYS 1644

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            F++K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLR
Sbjct: 1645 FQNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLR 1704

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGEC 1107
            SALVNN IFASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + 
Sbjct: 1705 SALVNNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDE 1764

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRE 1167
            ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RE
Sbjct: 1765 EKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRE 1824

Query: 1168 LLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
            LLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ 
Sbjct: 1825 LLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKAN 1883

Query: 1228 KP 1229
            +P
Sbjct: 1884 QP 1885



 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 61/148 (41%), Positives = 87/148 (58%), Gaps = 19/148 (12%)

Query: 709  NASNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFD 768
            +A+ P   TA  ++      + +T G   K++   P         G+I    T S+ S  
Sbjct: 1230 SATAPRSPTAPSSDSTNEHQQGSTVGDSPKNLGPNP---------GLILQALTLSNASDG 1280

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
            F  +LE        RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++L
Sbjct: 1281 F--NLE--------RLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRL 1330

Query: 829  GKQKVFGESMIATKFEPRDNWLPPGYFV 856
            GK+K     M+ + F+P  NWLPPGY V
Sbjct: 1331 GKKKGLPSRMVVSIFDPPVNWLPPGYVV 1358


>gi|339239929|ref|XP_003375890.1| putative RNase3 domain protein [Trichinella spiralis]
 gi|316975421|gb|EFV58865.1| putative RNase3 domain protein [Trichinella spiralis]
          Length = 1903

 Score =  377 bits (968), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 229/502 (45%), Positives = 296/502 (58%), Gaps = 87/502 (17%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GDSFLKY  T++ Y  Y  +HEGKLS LRS+ +SNYNL+KLGK+K   + MIA KF
Sbjct: 1421 LEILGDSFLKYVTTVYCYKAYSKMHEGKLSLLRSRMISNYNLYKLGKRKNIPQYMIAIKF 1480

Query: 844  EPRDNWLPPGYFVPKYLE---TALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
            +P D WLPP Y VP   E   TA+ E            L   + ++ E V+E  +Q+ V+
Sbjct: 1481 DPSDTWLPPCY-VPLNCEVQDTAIEEED---------KLMEQRLMNDESVVE--QQRNVE 1528

Query: 901  LDCT-----------VDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
                           V  ++  +VP+NL+ Q  I DK +ADCVEALIGAYL+ CG R  L
Sbjct: 1529 TTGRQATTGSKSTKWVPEDLSQLVPFNLLAQQGISDKGVADCVEALIGAYLLFCGTRRTL 1588

Query: 950  LFMSWLGLKVIPPVT---------NPESKHLSDVLLDGFDK------------------- 981
             F+ WLGLKV   V+         +P     ++  L G  K                   
Sbjct: 1589 DFLHWLGLKVEDEVSLRGFSRCIVSPTPISFANFDLYGVTKSALINNSADSEACLKTLWN 1648

Query: 982  ------FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                  FE+ I YRFKD+S L+QA+TH++YF N +TDCYQRLEFLGDA+LD+LITRHLYE
Sbjct: 1649 RFSLSQFEDIIGYRFKDRSLLVQALTHSTYFYNEVTDCYQRLEFLGDAVLDHLITRHLYE 1708

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK-------- 1087
            D+R HSPG LTDLRSAL                 +F +L PGL  +I++FVK        
Sbjct: 1709 DKRMHSPGMLTDLRSAL-----------------YFMYLCPGLMMMIEKFVKTLNIIKEN 1751

Query: 1088 --MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                 E    L   Y L   E +  E +EVPKALGD+FESVAGAIYLDSG SL TVW +Y
Sbjct: 1752 ANFDREVRVHLLNLYLLEGEEENAEEQVEVPKALGDIFESVAGAIYLDSGCSLHTVWCIY 1811

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +++ EIE+  ++ P SPIR+LLELEP+  +FS+ E+ A   +V+V V V GKG + G 
Sbjct: 1812 YNMLREEIEKCCLNPPISPIRDLLELEPDRVKFSRVERNAVEGKVKVAVTVEGKGRFVGA 1871

Query: 1206 GRNYCIAKCTAAKCALKHLKSA 1227
            GR+Y IAK TAAK AL++LK +
Sbjct: 1872 GRSYRIAKSTAAKRALRYLKGS 1893



 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 170/518 (32%), Positives = 274/518 (52%), Gaps = 70/518 (13%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD---SIMFTCSIRLPINSPLKRSVT 57
            + N+I IVN YC RLP DIF+RL     + ++   +   S  +  +++LPINSP      
Sbjct: 574  LANSIRIVNHYCQRLPCDIFSRLVADCHVEKVMSGECAPSPKYRATLKLPINSP------ 627

Query: 58   GHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLY----ENTE--PVVPKTP 111
            G  + + +LA R  A+E  ++L+   EL + LMP+ KE +       E+ E  PV  K  
Sbjct: 628  GPTVDSVMLARRSVALETVKLLHRRGELYDSLMPIGKEMVASLLIADEDDEEWPVTGKAC 687

Query: 112  EIETYPDSTKRRQFYHKRMAS--------CFTNCRPSVNTPCYLYAVKMKLTCPIPDEQN 163
                 P S+KRRQ+Y+K + +        C     P  + P Y +A+ ++    I + + 
Sbjct: 688  -----PGSSKRRQYYNKAVRAGACKSLIECLKRAIPVFDEPGYFHAIIIREVSEICNGE- 741

Query: 164  KRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNT 223
                 I  PE   + L I ++K IP++ +F I+ +     V I      + +++  ++  
Sbjct: 742  ---ANISQPEVGKRILGIFSSKPIPQIPAFMIYEKTKSFLVEIRPCASTITVNKGQMAVI 798

Query: 224  LIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVI 283
              F  Y+F+++LKL+KY M + P  +EN++FIVP++S     ++DW+F+  +  + + V 
Sbjct: 799  AEFNMYIFSEILKLEKYSMKYQPEEAENAFFIVPSISTETDYILDWQFIVEVVNYWDRVP 858

Query: 284  QDIPEKERENFVFDES-------------KFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
            +   E++R+NFVFD S             +++DAVVMPWYR+Q     ++V  +   + P
Sbjct: 859  RRPDEEQRKNFVFDISNLVKIGFVFFNAFRYKDAVVMPWYRSQEMSHCYFVLNVDEGLTP 918

Query: 331  RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
             + FP   + Y++F+ Y+  KYGL+I + +QPLL+VD+T+ RLN L PR   R+      
Sbjct: 919  LTKFPD--DEYESFKSYFWQKYGLEIYHDDQPLLNVDYTASRLNRLFPRRQARR------ 970

Query: 391  TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
             S E   +    + +KQ LVPEL  IHP PAS WR    LPSILYRL++LLLA+E+R   
Sbjct: 971  ESLEADYDTMSVVAQKQKLVPELVDIHPIPASTWRCLQYLPSILYRLSSLLLANELRL-- 1028

Query: 451  ASEIGLGKVILDEKVE--------WPPFNFGWKMKKLK 480
                   +V+LDE           W P +  W  + ++
Sbjct: 1029 -------QVLLDEYNNDPTPDGYCWAPIDKAWLKETMR 1059


>gi|198421916|ref|XP_002122382.1| PREDICTED: similar to rCG20888 [Ciona intestinalis]
          Length = 2053

 Score =  375 bits (963), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 227/584 (38%), Positives = 328/584 (56%), Gaps = 40/584 (6%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGH 59
            M NA+ IVNRYC RLPSD FT L+P   + E+  D DS MF C ++LPINS ++  V G 
Sbjct: 703  MKNAVRIVNRYCNRLPSDPFTHLSPRCEVVEVLNDGDSPMFMCILQLPINSHVREPVQGI 762

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
             MPT  LA +  AME C+VLYE  ELD +LMP+ KE +   E  +P   +   I   P S
Sbjct: 763  VMPTLQLAQQAVAMETCKVLYEAGELDENLMPIGKETVKYAEELDPWKREVSSITGRPGS 822

Query: 120  TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            TK+RQ Y+K       +C P  +   ++Y ++MK+  P+ DE N R RK+  PE + +  
Sbjct: 823  TKKRQTYNKDSPQILRSCLPQPDINLFIYEIEMKIKNPLLDELNVRRRKLFFPEETSRCF 882

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
             ILTTK IP++  FPIFTR GE    ++     V LS + +    IF  Y+F+ +L++ +
Sbjct: 883  GILTTKPIPQIPGFPIFTRSGEESAKLKFCRGFVQLSAQQIKLVRIFHRYVFSDMLRVDR 942

Query: 240  YLMLFDPNCSENSYFIV---------PTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE-- 288
              + F P  S +   +V          + ++S Q+ IDW FM + +E    VI+ +    
Sbjct: 943  VPLSFQPEKSTSQLLVVVLNKVGTNKSSTANSSQLNIDWSFM-MKTESKRRVIEKMKSDP 1001

Query: 289  --KEREN-----FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
              K + N     FVF+   + D VV+  YR+  +P  FYVAE+  ++ P S FPS  + Y
Sbjct: 1002 WYKHKMNEQNKVFVFNRQLYEDGVVVAKYRSCDQPNRFYVAELKDDMTPLSSFPS--SEY 1059

Query: 342  QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            ++F  YY LKYGL I+ L+QPLLDVDHTS RLN LTPR++N+KG  L  +S E +R   E
Sbjct: 1060 ESFLHYYQLKYGLDIRCLKQPLLDVDHTSSRLNLLTPRHLNQKGKALPMSSLEKKRAKYE 1119

Query: 402  SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVIL 461
            SL  +Q+LVPELC +HP PASLWRK+V LPS+LYR+N LL+A+E+R  +A + G+     
Sbjct: 1120 SLHNRQILVPELCEVHPIPASLWRKAVCLPSVLYRVNQLLIAEELRKNIAFKSGI----- 1174

Query: 462  DEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVE 521
               +E PP    W+       +GW   + +D   +        +  S V+EI +E    E
Sbjct: 1175 --TMEQPPIGNMWQ----NLHFGWTDNEDSDDDNEKLLEKSPAQRKSQVDEISSE--NNE 1226

Query: 522  IVDKKETVCDSG-----NEQENEDEEKLDKIKSDENKTESQGVE 560
            ++++ + V D       N  EN+ E        + N  ++Q V+
Sbjct: 1227 VLNENKNVFDENIPKVPNSVENDGECAQHDNLEETNHKQNQHVD 1270



 Score =  358 bits (918), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 191/352 (54%), Positives = 232/352 (65%), Gaps = 43/352 (12%)

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-------------- 961
            +L TQHS+ DKSIADCVEAL+GAYL  CG R A L +  LGL V+P              
Sbjct: 1700 DLHTQHSLADKSIADCVEALLGAYLTTCGHRSAQLLLCHLGLNVLPKVAQAETSKTVDRF 1759

Query: 962  ----PVTN------PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                P TN      P  ++  D LL     FE  INY FK+K+YLLQA THASY+ NT+T
Sbjct: 1760 GYLTPPTNKMLECRPNQQNKLDQLLVALSGFERKINYTFKNKAYLLQAFTHASYYYNTVT 1819

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            DCYQRLEFLGDA+LD+LITRHL+ DER HSPG LTDLRSALVNN IFASLAV   FH +F
Sbjct: 1820 DCYQRLEFLGDAVLDFLITRHLFNDERHHSPGALTDLRSALVNNTIFASLAVHYDFHKYF 1879

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIE----------------- 1114
            K +SP LH +I+ FV  Q + +     + +LM  + D  E +                  
Sbjct: 1880 KSISPELHHIIEDFVMYQQKQEDAQGMDAHLMR-DYDRVEIVAPSSLEKDEEEGENEDVE 1938

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            VPKALGD+FESVAGAIY+DSGM L +VWKVY  +M   IE+ S  VP+SP+RELLE+EPE
Sbjct: 1939 VPKALGDIFESVAGAIYMDSGMDLSSVWKVYSVMMLPLIEKFSACVPRSPVRELLEMEPE 1998

Query: 1175 NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
             A+FS  EK  DG +VRVTVE+ GKG +KG+GR+Y IAK  AA+ AL++LK 
Sbjct: 1999 TAKFSCAEKRYDG-KVRVTVEIIGKGRFKGVGRSYRIAKSAAARRALRYLKG 2049



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 45/79 (56%), Positives = 60/79 (75%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLE +GDSFLK+A+T++LYCTYP  HEGKLS++RSK+VSNYNL+++GKQ      
Sbjct: 1473 GFNLERLEMLGDSFLKHAVTVYLYCTYPESHEGKLSYMRSKKVSNYNLYRIGKQFGLAGK 1532

Query: 838  MIATKFEPRDNWLPPGYFV 856
            M    F+P  NWLP G+ V
Sbjct: 1533 MTGLIFDPTVNWLPTGFVV 1551


>gi|410928196|ref|XP_003977487.1| PREDICTED: endoribonuclease Dicer-like [Takifugu rubripes]
          Length = 1883

 Score =  375 bits (962), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 208/478 (43%), Positives = 287/478 (60%), Gaps = 8/478 (1%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     EI+   S +F   + LPINSPL+  V G  
Sbjct: 616  VNTAIGHINRYCARLPSDPFTHLAPKCKTVEIQ---SGLFQSRLYLPINSPLRIPVKGPI 672

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 673  MNCIRLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 732

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +    ++   YLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 733  KRRQCYPKAIPECLWDSYAVLDQIYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 792

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      L+   L        Y+F+ +L+L+K 
Sbjct: 793  ILTAKPIPQIPHFPVYTRSGEVTISIELQKSGFSLTAAQLDLITRLHHYIFSHILRLEKP 852

Query: 241  LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN-FVFD 297
             + F P  ++++Y ++P   V +S  + +D++FM  I +          +  ++N F F 
Sbjct: 853  ALEFKPLQADSAYCVLPLNIVGNSNTLDMDFQFMEDIEKSEARTGIPTTQYTKQNPFSFK 912

Query: 298  ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
               ++DAV++P YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + 
Sbjct: 913  LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLT 970

Query: 358  NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH 417
            NL QPLLDVDHTS RLN LTPR++N+KG  L  +S E R+   ESL  KQ+LVPELC IH
Sbjct: 971  NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1030

Query: 418  PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
            P PASLWRK+V LPSILYRL+ LL A+E+R   A E G+G   L     +P  +FGWK
Sbjct: 1031 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIEAGVGARTLPPDFRYPNLDFGWK 1088



 Score =  364 bits (935), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 195/358 (54%), Positives = 250/358 (69%), Gaps = 35/358 (9%)

Query: 905  VDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV----- 959
            VD+  Q++  Y+L T+  I DKSIADCVEAL+G YL  CG R A +F+  LGLKV     
Sbjct: 1523 VDLGKQTI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLEE 1581

Query: 960  -----------------------IPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
                                   IPP   + +P+++H    L+ GF+ FE  INY F++K
Sbjct: 1582 GVVTGPRRSHGTTAVDLCYGWLKIPPRSMLDHPDAEHTLHHLISGFENFERKINYTFQNK 1641

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            +YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALV
Sbjct: 1642 AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 1701

Query: 1054 NNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAE 1111
            NN IFASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ E
Sbjct: 1702 NNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 1761

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            DIEVPKA+GD+FES+AGAIY+DS MSL+TVW++YY +M+  IE+ S +VP+SP+RELLE+
Sbjct: 1762 DIEVPKAMGDIFESLAGAIYMDSRMSLETVWQIYYPMMRPLIEKFSANVPRSPVRELLEM 1821

Query: 1172 EPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            EPE A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 1822 EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1878



 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 1279 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1338

Query: 842  KFEPRDNWLPPGYFV 856
             F+P  NWLPPGY V
Sbjct: 1339 IFDPPVNWLPPGYIV 1353


>gi|47210542|emb|CAF93934.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 1479

 Score =  371 bits (953), Expect = 1e-99,   Method: Compositional matrix adjust.
 Identities = 221/593 (37%), Positives = 318/593 (53%), Gaps = 44/593 (7%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            ++ AI  +NRYCARLPSD FT LAP     E++      F   + LPINSPL+  V G  
Sbjct: 673  INTAIGHINRYCARLPSDPFTHLAPKCKTVELQNGH---FQSRLYLPINSPLRVPVKGPI 729

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
            M    LA +  A+  C  L+++ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 730  MNCVRLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 789

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            KRRQ Y K +  C  +   +++   YLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 790  KRRQCYPKAIPECLWDSYAALDQTYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 849

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            ILT K IP++  FP++TR GEV +SIEL      L+   L        Y+F+ +L+L+K 
Sbjct: 850  ILTAKPIPQIPHFPVYTRSGEVTISIELQKSGFSLTAAQLDLITRLHHYIFSHILRLEKP 909

Query: 241  LMLFDPNCSENSYFIVP-----------------------------TVSDSEQIVIDWKF 271
             + F P+ ++++Y ++P                             +V +S  + +D+KF
Sbjct: 910  ALEFKPSQADSAYCVLPLNVGEWNESIKSLGKPLLVLQRSLISISLSVGNSNTLDMDFKF 969

Query: 272  MTLISEHHNDVIQDIPEKEREN-FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
            M  I +          +  ++N F F    ++DAV++P YRN  +P  FYVA++ T++ P
Sbjct: 970  MEDIEKSEARTGIPTTQYTKQNPFSFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTP 1029

Query: 331  RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
             S FPS    Y+TF EYY  KY L + NL QPLLDVDHTS RLN LTPR++N+KG  L  
Sbjct: 1030 LSKFPS--PEYETFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPL 1087

Query: 391  TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            +S E R+   ESL  KQ+LVPELC IHP PASLWRK+V LPSILYRL+ LL A+E+R   
Sbjct: 1088 SSAEKRKAKWESLQNKQILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQT 1147

Query: 451  ASEIGLGKVILDEKVEWPPFNFGWKM----KKLKEKYGWDTKDANDVIVDDTEVNDTKED 506
            A+E G+G   L     +P  +FGWK     K         +KDA+D       +N +   
Sbjct: 1148 ATEAGVGARTLPPDFRYPNLDFGWKRSIDGKTFMSSPEPGSKDADDKPQAARSLNSSSPT 1207

Query: 507  DSAVNEICTEIAKVE-----IVDKKETVCDSGNEQENEDEEKLDKIKSDENKT 554
                ++   E A+       I    +  CD G   ++E   + +  +  ++ T
Sbjct: 1208 HPGCHQSSCEPAEATCMMNLINGTAQLDCDGGGGHKDEHLHQYESCQISKSST 1260



 Score =  107 bits (268), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 57/124 (45%), Positives = 80/124 (64%), Gaps = 16/124 (12%)

Query: 739  DVKTEPKSPGKSCEH------GIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFL 792
            D+++ PK   K+ +       G+I    T S+ S  F  +LE        RLE +GDSFL
Sbjct: 1329 DLRSVPKHRSKAGDRSLGPNPGLILQALTLSNASDGF--NLE--------RLEMLGDSFL 1378

Query: 793  KYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPP 852
            K+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ + F+P  NWLPP
Sbjct: 1379 KHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPP 1438

Query: 853  GYFV 856
            GY V
Sbjct: 1439 GYVV 1442


>gi|6102924|emb|CAB59269.1| hypothetical protein [Homo sapiens]
          Length = 525

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 202/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 137  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 195

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 196  VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 255

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 256  PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 315

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 316  DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 375

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 376  VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 435

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 436  VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 494

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AAK AL+ LK+ +P
Sbjct: 495  GVGRSYRIAKSAAAKRALRSLKANQP 520


>gi|47210543|emb|CAF93935.1| unnamed protein product [Tetraodon nigroviridis]
          Length = 479

 Score =  364 bits (934), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 195/358 (54%), Positives = 252/358 (70%), Gaps = 35/358 (9%)

Query: 905  VDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV----- 959
            V++  Q++  Y+L T+  I DKSIADCVEAL+G YL  CG R A +F+  LGLKV     
Sbjct: 119  VELGKQTI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLEQ 177

Query: 960  -----------------------IPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
                                   IPP   + +P+++H  + L+ GF+ FE  I+Y F++K
Sbjct: 178  GAAAGAAQSGRTAASDLCYGWLKIPPRCMLDHPDAEHTLNHLISGFENFERKISYTFQNK 237

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            +YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALV
Sbjct: 238  AYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALV 297

Query: 1054 NNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAE 1111
            NN IFASLAV+  +H +FK +SP L  VI  FV+ Q E +    ++ E    E + ++ E
Sbjct: 298  NNTIFASLAVKYDYHKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEE 357

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            DIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+
Sbjct: 358  DIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEM 417

Query: 1172 EPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            EPE A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 418  EPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 474


>gi|321458470|gb|EFX69538.1| hypothetical protein DAPPUDRAFT_329028 [Daphnia pulex]
          Length = 1597

 Score =  363 bits (933), Expect = 2e-97,   Method: Compositional matrix adjust.
 Identities = 222/514 (43%), Positives = 284/514 (55%), Gaps = 90/514 (17%)

Query: 757  RNTSTP--SDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAI 796
            RN+S     +F FD  P      GPSP                  +RLE IGDSFLK A 
Sbjct: 1126 RNSSAAFAVNFRFDDGPMDNCPKGPSPGEVLRALTTSVANAGYDLERLEVIGDSFLKLAA 1185

Query: 797  TIFLYCTYP-NVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
            +I +YC  P + HEGK++HLR  QV N NLFKLGK K     ++ATKF  ++NWLPP YF
Sbjct: 1186 SIRVYCDSPSHFHEGKMTHLRMLQVCNRNLFKLGKIKSIPRFVVATKFVAKENWLPPCYF 1245

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPY 915
                                    PN                  D DC   M +++    
Sbjct: 1246 ------------------------PN----------------NTDDDC---MELETDEKP 1262

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV---------------- 959
            N      I  KS+AD VEAL G YL   G +GAL  M W+G+ V                
Sbjct: 1263 NAKLWQRISKKSVADSVEALFGLYLTLHGIKGALKVMRWMGVNVPDSSGDEDSSSSSSSF 1322

Query: 960  --IPP----VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
               PP    + +P++KHL D  L GF+  E S+N+RF ++ YLLQA +HASY  N +T C
Sbjct: 1323 GGTPPEPLLLDSPQAKHLLDDHLAGFETLERSLNFRFGNRFYLLQAFSHASYHHNRMTSC 1382

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAH-SPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            YQRLEFLGDA+ DYLIT++LY+      +PG L+D+RSALVNN+ FA LAVR GFH + K
Sbjct: 1383 YQRLEFLGDAVFDYLITKYLYDCRLFQLTPGALSDMRSALVNNVTFAVLAVRNGFHRYLK 1442

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIY 1131
            HL P +H+ I RFV+ Q   D     E++L+    D  AE +EVPK LGD+FES+ GA++
Sbjct: 1443 HLVPDVHQAIDRFVQQQEMCDHATPDEFFLIGTHDDPMAEAVEVPKVLGDIFESLVGAVF 1502

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            LDS MSLD VW+V+Y +++ EIE  +  VPKSPIR + E  P   +F   E L DG R+ 
Sbjct: 1503 LDSDMSLDAVWRVFYPLIRQEIEACTRVVPKSPIRTIYEKYPGKVQFKTLENLPDG-RIC 1561

Query: 1192 VTVEVFGKGS-YKGIGRNYCIAKCTAAKCALKHL 1224
            + VEV   G  YKG+G+N  IAK TAAK AL  L
Sbjct: 1562 IAVEVLNNGRLYKGVGKNSRIAKNTAAKYALSQL 1595



 Score =  203 bits (517), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 161/542 (29%), Positives = 270/542 (49%), Gaps = 74/542 (13%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEI-----------------KEDDSIM--FTCS 43
            ++I ++N YCA LPSD    LAP   ++ I                 +   +I   F C+
Sbjct: 581  SSISLLNWYCATLPSDGSAPLAPYYVVNRISAGSLAEMDRDHTNHLRRLGSTIQNPFRCT 640

Query: 44   IRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDND-LMPVTKEFINLYEN 102
            + LP+N PL+  + G  MP+K LA +  +++AC  L++L ELD+  LMP++K  +   EN
Sbjct: 641  LLLPLNCPLRDELIGRVMPSKRLAKQEVSLQACIRLHQLGELDDQHLMPLSKSVVETDEN 700

Query: 103  TEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ 162
             +       + +   + ++   FY + +A         + +P YLY +  ++       +
Sbjct: 701  ADV------DFDCQFEHSQGSDFYLRGVARLLDGV---IASPFYLYLLTYEVVKDSAQPE 751

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSN 222
            N+       P  + + +  L+++ +P V  F +++  G++ V    +D  + L+ +++  
Sbjct: 752  NQ-----FDPNRAQRRMGFLSSQKLPAVNPFGLYSPAGQINVGFLEVDSFLRLTLDDVKL 806

Query: 223  TLIFMDYLFTKVLKL---KKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHH 279
               F  +LF K+L+L   ++Y      N S  SY +VP  ++     ID  FM   +EH 
Sbjct: 807  CHRFQQFLFEKILQLPGEEQY------NPSRGSYLVVPITNNR----IDVAFM---NEHL 853

Query: 280  NDVIQDIPEKERENF----VFDESK-FRDAVVMPWY-RNQFEPTYFYVAEIMTNVHPRSM 333
            +  + D       +     V D  K + DAVV   + + + + + +YV  +   V P S 
Sbjct: 854  DSTVPDWQPHPPSSLSSSQVVDYFKVYGDAVVTAHHDQTKGKSSCYYVNAVRPEVTPLSR 913

Query: 334  FPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCR-LNFLTPRYVNRKGINLATTS 392
            FP+    Y T+  Y+  ++   I NL QPLL+V   S +  NFLTP+YVNRK       +
Sbjct: 914  FPN--PAYATYANYFRDRHNAIIANLSQPLLEVRKESFKTFNFLTPKYVNRK-----EAA 966

Query: 393  EETRREIRESLGKKQL-LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
            +E   EI +SL K  +  VPE C +H FPAS+WR++V +PSI YRLN+LLLADE+R  + 
Sbjct: 967  DEGDGEI-QSLPKGSIYFVPEFCEVHRFPASMWRQAVWIPSIFYRLNSLLLADELRMEIQ 1025

Query: 452  SEIGLGKVILDEKVEWPPFNFGWKMK------KLKEKYGWDTKDANDVIVDDTEVNDTKE 505
            ++ GLG  +L   ++W P       K      ++ EK   +  D  D++  D  +N  +E
Sbjct: 1026 AKTGLGLSVLPPNLQWEPLQMKTSGKCQQLPLQVVEKSDQNDMDEGDLMQTDMTLN--RE 1083

Query: 506  DD 507
            DD
Sbjct: 1084 DD 1085


>gi|193787170|dbj|BAG52376.1| unnamed protein product [Homo sapiens]
          Length = 820

 Score =  363 bits (933), Expect = 3e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 432  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 490

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 491  VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 550

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 551  PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 610

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 611  DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 670

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 671  VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 730

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 731  VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 789

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 790  GVGRSYRIAKSAAARRALRSLKANQP 815



 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 211 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 270

Query: 842 KFEPRDNWLPPGYFV 856
            F+P  NWLPPGY V
Sbjct: 271 IFDPPVNWLPPGYVV 285


>gi|193786026|dbj|BAG51002.1| unnamed protein product [Homo sapiens]
          Length = 554

 Score =  363 bits (932), Expect = 4e-97,   Method: Compositional matrix adjust.
 Identities = 201/386 (52%), Positives = 252/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 166  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 224

Query: 960  ---------------------------------------------------IPP---VTN 965
                                                               IPP     +
Sbjct: 225  VIKRTDREKALCPTRENFNSQQKNLSVSCAAASVASSRSSVLKDSEYGCLKIPPRCMFDH 284

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++    + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 285  PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 344

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 345  DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 404

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+
Sbjct: 405  VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQ 464

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 465  VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 523

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 524  GVGRSYRIAKSAAARRALRSLKANQP 549


>gi|74204500|dbj|BAE23515.1| unnamed protein product [Mus musculus]
          Length = 514

 Score =  363 bits (931), Expect = 5e-97,   Method: Compositional matrix adjust.
 Identities = 201/384 (52%), Positives = 252/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 128  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 186

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 187  VIKRTSREKALDPAQENGSSQQKSLSGSCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPD 246

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 247  AEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 306

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FVK
Sbjct: 307  LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVK 366

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 367  FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 426

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +KG+
Sbjct: 427  YPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFKGV 485

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 486  GRSYRIAKSAAARRALRSLKANQP 509


>gi|355683929|gb|AER97238.1| dicer 1, ribonuclease type III [Mustela putorius furo]
          Length = 560

 Score =  362 bits (928), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 200/386 (51%), Positives = 254/386 (65%), Gaps = 60/386 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 173  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 231

Query: 962  PV---------------TNPESKHLS---------------------------------- 972
             +               ++ + K+LS                                  
Sbjct: 232  VIRRTGREKAVGPPRENSSSQQKNLSGSRAPASAAGSRSSVLRDLEYGCLKIPPRCMFDH 291

Query: 973  -------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 292  PDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 351

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 352  DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 411

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 412  VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 471

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 472  VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 530

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 531  GVGRSYRIAKSAAARRALRSLKANQP 556


>gi|71051733|gb|AAH98796.1| Dicer1 protein [Rattus norvegicus]
          Length = 401

 Score =  358 bits (919), Expect = 1e-95,   Method: Compositional matrix adjust.
 Identities = 198/384 (51%), Positives = 251/384 (65%), Gaps = 58/384 (15%)

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV  
Sbjct: 15   NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 73

Query: 960  -------------------------------------------------IPP---VTNPE 967
                                                             IPP     +P+
Sbjct: 74   VIKRTSRDKASYPAQENSSSQQKSPSGSCAAAVSPRSSAGKDLEYGCLKIPPRCMFDHPD 133

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++   + L+ GF+ FE+ INY FK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDY
Sbjct: 134  AEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDY 193

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            LIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+
Sbjct: 194  LITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQ 253

Query: 1088 MQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VY
Sbjct: 254  FQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVY 313

Query: 1146 YEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            Y +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVE+ GKG +KG+
Sbjct: 314  YPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVELVGKGKFKGV 372

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKP 1229
            GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 373  GRSYRIAKSAAARRALRSLKANQP 396


>gi|406034947|emb|CCF23094.1| Dicer 2 [Blattella germanica]
          Length = 1649

 Score =  350 bits (899), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 204/469 (43%), Positives = 272/469 (57%), Gaps = 28/469 (5%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDSFLK   +++LY  Y  + EGKL+ ++ K + N NL+  G  +  G  M   
Sbjct: 1179 ERLETLGDSFLKLMASLYLYMHYLRLDEGKLTQVKGKLIGNRNLYYCGINQKLGGYMKVH 1238

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLEIIKQKC 898
             F P  +W+ PG  V + ++  +       +    L LP  +++S    E   EII+QK 
Sbjct: 1239 DFVPTSDWIAPGICVDREIQQLMRAMNVSPNFLYELVLPPNEQMSGVLSENTKEIIRQKL 1298

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
             D    VD +       N +   ++ DK+IAD VEALIGAYL   G RGAL  ++WL   
Sbjct: 1299 TD--ANVDKSGIHSSMENFLAVRAVADKTIADGVEALIGAYLKGSGIRGALRLLTWLKIL 1356

Query: 957  ---------LKVIPPVTNPESKHLSD-----VLLDGFD--KFEESINYRFKDKSYLLQAM 1000
                     L   PP  + + +  +      VLL   +    E  + Y FKD+SYLLQA+
Sbjct: 1357 PSEALPGALLDTQPPTADVKMRDHNQPGDIYVLLSIHECMAIENILQYTFKDRSYLLQAL 1416

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            THASY  N +T+CYQRLEFLGDAILD+LIT H+YE     +PG LTDLRS+LVNN+ FAS
Sbjct: 1417 THASYTPNRVTECYQRLEFLGDAILDFLITCHIYESCGELTPGELTDLRSSLVNNVTFAS 1476

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM--EGECDEAEDIEVPKA 1118
            L VR GFH F K+ S  L +++ RFVK Q +N  ++N+E  ++  E E + AE I+VPK 
Sbjct: 1477 LTVRYGFHKFMKYTSTRLMDMVDRFVKFQEDNGHSINEEVLILLEETETNIAEAIDVPKV 1536

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
            LGDLFES+AGAIYLDSGM+L  VW+VYY +M+ EI   S  VPK P+R L E  P    F
Sbjct: 1537 LGDLFESIAGAIYLDSGMNLKEVWRVYYRLMRKEIRTFSKEVPKQPVRLLYENAPHRPEF 1596

Query: 1179 SKPEKLADGRRVRVTVEVFGKGS---YKGIGRNYCIAKCTAAKCALKHL 1224
             K   + +   V VTV++   G    + G G     AK  AAKCALK L
Sbjct: 1597 LKSRLIDNSNVVMVTVKLLVDGKRRYFHGFGNTKLQAKRAAAKCALKSL 1645



 Score =  261 bits (668), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 167/477 (35%), Positives = 272/477 (57%), Gaps = 29/477 (6%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI +++RYC  LP D FT LAPI  ++E  +         ++LP+NSPL   + G +M 
Sbjct: 582  SAIPLLHRYCNMLPQDKFTVLAPIWYMAETTKPK-----ICLQLPMNSPLTELIEGQEMD 636

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVP------KTPEIETY 116
             + L+ R AA+EAC+ L+++ EL + L+P  +E   L  ++  + P      +T E++T 
Sbjct: 637  NRKLSKRSAALEACKRLHQMGELTDSLLPTGRESAVL--DSSDLFPLYVEDDETEELDTA 694

Query: 117  PDSTK-RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
            P  +K R+Q+Y  +     +NCRP  N   +L+ + M+     P + N R    +   +S
Sbjct: 695  PRGSKNRKQYYPIQFPDFLSNCRPKPNVDSFLHVIVMEPVYSKPTDNN-RKLVFYNLLDS 753

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
             +  AIL++K +P++C FPI+   GE+ V ++  DK   L+EE +++  +F   +F ++L
Sbjct: 754  VESFAILSSKPMPEICDFPIYMNVGELIVHVQQNDKFYRLTEEEVASLEVFNIMIFRQIL 813

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSEQI-VIDWKFMTLISEHHNDVIQDIPEKERENF 294
            KL K  M+ D    ENSYF+VPT  DS  +  IDW  +   S      + +  E+ER N 
Sbjct: 814  KLMKPFMIIDKENLENSYFMVPTRIDSNGVHEIDWDVVR--SHGTLPEVVEPTEEERNNL 871

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
            V  E  F   VV+PWYR+  +P   Y+   +T++ P S FPS  N Y ++ +YY  KY L
Sbjct: 872  VISEELFGKTVVVPWYRST-QPDQNYIVTQITSLTPSSPFPS--NDYTSYADYYDKKYKL 928

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLA-TTSEETRREIRESLGKKQLLVPEL 413
            +I  ++QPLL+V   S ++N L PR     G  ++ +TS+  R E++E    ++ L+ EL
Sbjct: 929  EIVKVDQPLLEVKAISNKINCLRPR-----GNKVSHSTSKRKRHELQEDF--EENLIGEL 981

Query: 414  CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
            C+   FP+ LW K+  LP+IL+R+N +LLA+E+R  +  +IG+G++ L    +W P 
Sbjct: 982  CMRFQFPSVLWLKATCLPTILHRINHILLAEELRQKIVRDIGVGQLSLQIGQKWKPI 1038


>gi|188593364|emb|CAO78751.1| Oikopleura cytoplasmic RNAse III enzyme Dicer [Oikopleura dioica]
          Length = 1814

 Score =  348 bits (893), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 213/486 (43%), Positives = 287/486 (59%), Gaps = 67/486 (13%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD FLKY++T++LYC Y + HEG+LS  RSK+VSN NLF+LG        M+A 
Sbjct: 1310 ERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDIPGRMVAE 1369

Query: 842  KFEPRD---NWLPPGYFVPKY---------------------------------LETA-- 863
            +F   D   NWLPPGYF   +                                 +E+A  
Sbjct: 1370 QFMQNDTGGNWLPPGYFNKDHAALESDDSEDDDGFEFEPAKGERPQEINEDDSEIESAED 1429

Query: 864  -------LIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYN 916
                   +++     S    +S  + K+  P    +I   K +D      +N +  + YN
Sbjct: 1430 FDGEDISMVDEMLQGSSNQLMSFLDRKKQLPGDEFDISVWKPLDTKGKP-INTEEPLIYN 1488

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLL 976
              +   + DKSIADC+EALIGAYL   G      F+ ++GL V+P      S  L D L 
Sbjct: 1489 HYSDQYLTDKSIADCMEALIGAYLKATGIEATQQFLCYMGLIVLP------SSAL-DKLT 1541

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
              + +FE+ I Y FK+K YLLQ++THASY  N +T+CYQRLEFLGDA+LD+LITRHL++ 
Sbjct: 1542 RTYGEFEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDH 1601

Query: 1037 -ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-KMQAEND- 1093
              +  SPG LTDLR+ALVNN IFA+LAV+  FH +   L+P LH VI+ +V   Q   D 
Sbjct: 1602 PTKRFSPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDV 1661

Query: 1094 ---------FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                       L +E    EG+ +++EDIEVPK LGD++ESVAGAIYLDSGM+LD VW V
Sbjct: 1662 EGMEAVLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGV 1721

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF-GKGSYK 1203
            Y  +++  I++ S++ P+SPIRELLELEPE A+FS PEK ADG + RVTV +   KG + 
Sbjct: 1722 YRPMLQKYIDKYSINPPRSPIRELLELEPETAKFSAPEKRADG-KYRVTVHIANNKGRFA 1780

Query: 1204 GIGRNY 1209
            G GRN+
Sbjct: 1781 GAGRNH 1786



 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 168/503 (33%), Positives = 261/503 (51%), Gaps = 45/503 (8%)

Query: 7    IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
            ++N   +RLP D FT+L+ +    ++       F  S+ LP NS L+  +   +      
Sbjct: 600  LINSIYSRLPCDSFTQLSVLRKTLQLANG---KFQTSLVLPNNSHLRGILLAIQKKPLNC 656

Query: 67   AWRIAAMEACRVLYELKELDNDLMPVTKEF------INLYENTEPVVPKT---PEIETYP 117
            A R AA+EAC  L  L ELD+ L   +KE       I+ + N  P+  K    P +E  P
Sbjct: 657  AKRSAALEACTKLRILGELDDFLFNSSKEMDKYKFEIDPFPN--PLSRKRKPPPGMEGGP 714

Query: 118  DSTKRRQFYHKRMASCF-----------TNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRG 166
               KRRQ Y + +                +  P     CY+Y + M     + D+ N RG
Sbjct: 715  ---KRRQKYPRHIPRSLRAKPKDSKAEGASALPVPEKECYVYRISMFYRHGLADKYNYRG 771

Query: 167  RKIHPPENSPQGLAILTTKYIPKVCS-FPIFTRCGEVEVSIELIDKNVVLSEENLSNTLI 225
            RK+H PE+  +  AI++   IP   S F IF R GE  V++E I + V  S   L     
Sbjct: 772  RKLHRPEDFSKSFAIISALPIPHTISGFSIFDRSGEEGVNLEPIHQQVCFSATQLEIIKS 831

Query: 226  FMDYLFTKVLKLKK--YLMLFDPNCSENSYFIVPTVSDSE-QIVIDWKFMTLISEHHNDV 282
            F  Y+   V+++++   ++ F+P+ S   Y I P   D+  +  IDW ++T  S     +
Sbjct: 832  FHQYIIQDVIRIERPGGVVQFNPDKSPVPYLIAPVDCDNGIEWEIDWDYLTE-SIAGRVL 890

Query: 283  IQDIPEKER--------ENFVFDESKFRDAVVMPWYRNQFEPTY--FYVAEIMTNVHPRS 332
             ++  E ER        + F+F +S++ D+VV+  YR    PT   FYVAEI  ++ P S
Sbjct: 891  AKEAAEAERRVNTYSEDDPFIFHKSEYEDSVVICSYRRHDAPTQNRFYVAEIQYDMDPDS 950

Query: 333  MFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTS 392
             FP+  + Y++F +YY  ++ L + N +QPLLDVDHT CRLN LTPR+V +KG  L  ++
Sbjct: 951  PFPA--DDYESFRQYYMQRWALCLTNEKQPLLDVDHTDCRLNLLTPRFVTQKGRALPASA 1008

Query: 393  EETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
             E +R+  E    +Q L+PE+  +HP  ASLWRK+V LPSIL+R+  LL A+++R  ++ 
Sbjct: 1009 LEKKRQKYEDKANRQYLIPEILDVHPVSASLWRKAVCLPSILHRITCLLAAEDLRRRISR 1068

Query: 453  EIGLGKVILDEKVEWPPFNFGWK 475
            +  +G +I    + +P     W+
Sbjct: 1069 QTRVGLIIPPVGMVFPHLQLDWE 1091


>gi|19072784|gb|AAL84637.1|AF484523_1 endoribonuclease Dicer [Mus musculus]
          Length = 361

 Score =  343 bits (879), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 188/357 (52%), Positives = 235/357 (65%), Gaps = 57/357 (15%)

Query: 929  ADCVEALIGAYLIECGPRGALLFMSWLGLKV----------------------------- 959
            ADCVEAL+G YL  CG R A LF+  LGLKV                             
Sbjct: 1    ADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTSREKALDPAQENGSSQQKSLSG 60

Query: 960  ----------------------IPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKS 994
                                  IPP     +P+++   + L+ GF+ FE+ INYRFK+K+
Sbjct: 61   SCASPVGPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYRFKNKA 120

Query: 995  YLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVN 1054
            YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVN
Sbjct: 121  YLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVN 180

Query: 1055 NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAED 1112
            N IFASLAV+  +H +FK +SP L  VI  FVK Q E +    ++ E    E + ++ ED
Sbjct: 181  NTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEED 240

Query: 1113 IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELE 1172
            IEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+E
Sbjct: 241  IEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEME 300

Query: 1173 PENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            PE A+FS  E+  DG +VRVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 301  PETAKFSPAERTYDG-KVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 356


>gi|313236326|emb|CBY11646.1| unnamed protein product [Oikopleura dioica]
          Length = 1519

 Score =  338 bits (868), Expect = 8e-90,   Method: Compositional matrix adjust.
 Identities = 210/481 (43%), Positives = 274/481 (56%), Gaps = 99/481 (20%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLE +GD FLKY++T++LYC Y + HEG+LS  RSK+VSN NLF+LG        
Sbjct: 1061 GFNLERLEMLGDCFLKYSVTVYLYCKYEHQHEGQLSFFRSKKVSNRNLFRLGVYNDIPGR 1120

Query: 838  MIATKFEPRD---NWLPPGYFVPKY--LETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            M+A +F   D   NWLPPGYF   +  LE  LI                           
Sbjct: 1121 MVAEQFMQNDTGGNWLPPGYFNKDHAALEKPLI--------------------------- 1153

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                                  YN  +   + DKSIADC+EALIGAYL   G      F+
Sbjct: 1154 ----------------------YNHYSDQYLTDKSIADCMEALIGAYLKATGIEATQQFL 1191

Query: 953  SWLGLKVIPPVT-NPESK----------------HLS--------------DVLLDGFDK 981
             ++GL V+P  +  PE+                 HL               D L   + +
Sbjct: 1192 CYMGLIVLPSSSCEPETGKPLPPFLLLAPPIEPFHLKSCTQLEKMQRLQALDKLTRTYGE 1251

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED-ERAH 1040
            FE+ I Y FK+K YLLQ++THASY  N +T+CYQRLEFLGDA+LD+LITRHL++   +  
Sbjct: 1252 FEKKIGYTFKNKGYLLQSLTHASYQYNQVTNCYQRLEFLGDAVLDFLITRHLFDHPTKRF 1311

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-KMQAEND------ 1093
            SPG LTDLR+ALVNN IFA+LAV+  FH +   L+P LH VI+ +V   Q   D      
Sbjct: 1312 SPGELTDLRAALVNNNIFAALAVKFDFHKYLYALTPDLHNVIRDYVLYCQTRQDVEGMEA 1371

Query: 1094 ----FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                  L +E    EG+ +++EDIEVPK LGD++ESVAGAIYLDSGM+LD VW VY  ++
Sbjct: 1372 VLKRIRLEEEPEEEEGDHEDSEDIEVPKVLGDIYESVAGAIYLDSGMNLDAVWGVYRPML 1431

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF-GKGSYKGIGRN 1208
            +  I++ S++ P+SPIRELLELEPE A+FS PEK ADG + RVTV +   KG + G GRN
Sbjct: 1432 QKYIDKYSINPPRSPIRELLELEPETAKFSAPEKRADG-KYRVTVHIANNKGRFAGAGRN 1490

Query: 1209 Y 1209
            +
Sbjct: 1491 H 1491



 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 158/486 (32%), Positives = 248/486 (51%), Gaps = 76/486 (15%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M N++ ++N+YC RLP D FT+L+ +    ++       F  S+ LP NS L+  V GH 
Sbjct: 615  MQNSLSLLNKYCNRLPCDSFTQLSVLRKTLQLANGK---FQTSLVLPNNSHLRGIVVGHP 671

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEF------INLYENTEPVVPKT---P 111
              T  L+ R AA+EAC  L  L ELD+ L   +KE       I+ + N  P+  K    P
Sbjct: 672  KETAELSKRSAALEACTKLRILGELDDFLFNSSKEMDKYKFEIDPFPN--PLSRKRKPPP 729

Query: 112  EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHP 171
             +E  P   KRRQ Y +                             IP     R  +  P
Sbjct: 730  GMEGGP---KRRQKYPRH----------------------------IP-----RSLRAKP 753

Query: 172  PENSPQGLAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFM 227
             ++  +G + L    +P+    V    +F R G   V++E I + V  S   L     F 
Sbjct: 754  KDSKAEGASALP---VPEKECYVYRISMFYRHG---VNLEPIHQQVCFSATQLEIIKSFH 807

Query: 228  DYLFTKVLKLKK--YLMLFDPNCSENSYFIVPTVSDSE-QIVIDWKFMTLISEHHNDVIQ 284
             Y+   V+++++   ++ F+P+ S   Y I P   D+  +  IDW ++T  S     + +
Sbjct: 808  QYIIQDVIRIERPGGVVQFNPDKSPVPYLIAPVDCDNGIEWEIDWDYLTE-SIAGRVLAK 866

Query: 285  DIPEKER--------ENFVFDESKFRDAVVMPWYRNQFEPTY--FYVAEIMTNVHPRSMF 334
            +  E ER        + F+F +S++ D+VV+  YR    PT   FYVAEI  ++ P S F
Sbjct: 867  EAAEAERRVNTYSEDDPFIFHKSEYEDSVVICSYRRHDAPTQNRFYVAEIQYDMDPDSPF 926

Query: 335  PSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEE 394
            P+  + Y++F +YY  ++ L + N +QPLLDVDHT CRLN LTPR+V +KG  L  ++ E
Sbjct: 927  PA--DDYESFRQYYMQRWALCLTNEKQPLLDVDHTDCRLNLLTPRFVTQKGRALPASALE 984

Query: 395  TRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
             +R+  E    +Q L+PE+  +HP  ASLWRK+V LPSIL+R+  LL A+++R  ++ + 
Sbjct: 985  KKRQKYEDKANRQYLIPEILDVHPVSASLWRKAVCLPSILHRITCLLAAEDLRRRISRQT 1044

Query: 455  GLGKVI 460
             + +++
Sbjct: 1045 RVDQIL 1050


>gi|444518375|gb|ELV12129.1| Endoribonuclease Dicer [Tupaia chinensis]
          Length = 974

 Score =  335 bits (858), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 196/386 (50%), Positives = 246/386 (63%), Gaps = 61/386 (15%)

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG----------AYLIEC--------- 943
            C VD   QS+  Y+L T+  I DKSIADCVEAL+G          A L  C         
Sbjct: 586  CGVDTGKQSIS-YDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPV 644

Query: 944  ----GPRGAL-------------LFMSW------------------LGLKVIPP---VTN 965
                GP  A+             L +S                    G   IPP     +
Sbjct: 645  IKRTGPEKAVCPAQEDSSSQQKALSVSCAAATPAASSRPAPLKDLEYGCLKIPPRCMFDH 704

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P++      L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAIL
Sbjct: 705  PDADKTLTHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAIL 764

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 765  DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 824

Query: 1086 VKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            V+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+
Sbjct: 825  VQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQ 884

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 885  VYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 943

Query: 1204 GIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 944  GVGRSYRIAKSAAARRALRSLKANQP 969



 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 45/75 (60%), Positives = 61/75 (81%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K     M+ +
Sbjct: 364 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 423

Query: 842 KFEPRDNWLPPGYFV 856
            F+P  NWLPPGY V
Sbjct: 424 IFDPPVNWLPPGYVV 438



 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 36/64 (56%), Positives = 44/64 (68%), Gaps = 2/64 (3%)

Query: 310 YRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHT 369
           YRN  +P  FYVA++ T++ P S FPS    Y+TF EYY  KY L + NL QPLLDVDHT
Sbjct: 146 YRNFDQPHRFYVADVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLTNLNQPLLDVDHT 203

Query: 370 SCRL 373
           S R+
Sbjct: 204 SSRV 207


>gi|357616174|gb|EHJ70052.1| hypothetical protein KGM_09326 [Danaus plexippus]
          Length = 1249

 Score =  327 bits (839), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 197/537 (36%), Positives = 297/537 (55%), Gaps = 69/537 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPI-----ITISEIKEDDSIMFTCSIRLPINSPLKRS 55
            ++ AI ++NRYC +LPSD FTRL P      + + + + +    + C++R+P+N P+K +
Sbjct: 656  LNTAIALINRYCGKLPSDTFTRLTPQWRTERVILKDRRGEPRDAYVCTLRMPLNCPVKFN 715

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIET 115
            + GH MPT+ LA R+AA+ A R L+   ELD+ L+P+ KE     E     + ++ E   
Sbjct: 716  IVGHPMPTRSLARRMAALLASRALHRAGELDDQLLPIGKENFKAAEMENINLEESGE-NA 774

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYA----VKMKLTC---PIPDEQNKRGRK 168
             P +TKRRQ+Y+KR AS FTNCR     P   Y      K   TC    + +E   +  K
Sbjct: 775  RPGTTKRRQYYYKRTASAFTNCR-----PVVEYTDEDIEKKPHTCDEGKVDNETRSQAEK 829

Query: 169  IH---PPE-----------NSPQGLAILTTKYI--PKVCSFPIFTRCGEVEVSIE-LIDK 211
            ++   P E           N+  G     T  +   ++ S   F    ++    + ++ +
Sbjct: 830  LYNDIPTETKVVHLVGAIQNADLGEEARETAAVLLRRLLSAEFFEFFPKLPFDQQAMLRE 889

Query: 212  NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQ-----IV 266
             ++L+ +   +  +   ++F+ VL++++  M    + + N+Y++VPTV  +       I 
Sbjct: 890  QLLLTLQMDVSQQLRRKFVFSDVLRVRRRGMKL-ADTTHNNYYVVPTVKKTTSDGATWID 948

Query: 267  IDWKFMTLISEHHND------------------------VIQDIPEKERENFVFDESKFR 302
            IDW F+ LI +H  +                         I++   K  E FVFD  K++
Sbjct: 949  IDWPFLDLIYQHTEEKRCLEIEKPMLWEEEKKKEEKKGKKIENPLLKPGEVFVFDAEKYK 1008

Query: 303  DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
            +AVV PWYRNQ +P +F VAEI  N+ P S FPS    + +F  YY  KYG ++    QP
Sbjct: 1009 EAVVTPWYRNQDQPQFFLVAEICWNLTPESSFPSAQ--HASFRSYYKSKYGAELTQSNQP 1066

Query: 363  LLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPAS 422
            LLDVDHTS RLN LTPRYVNRKG+ L  +SE TRR  R+ L +KQ+LV ELC+ HPF A 
Sbjct: 1067 LLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRAKRDRLDQKQILVAELCMRHPFAAP 1126

Query: 423  LWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKL 479
            LW  +V+LP  LYR+NALLLADE+R AV+ ++G+G+   D  + WPP +FGW + ++
Sbjct: 1127 LWCAAVALPCALYRINALLLADEVRRAVSRDVGVGQPRDD--ISWPPLDFGWSLAEV 1181


>gi|321475108|gb|EFX86072.1| hypothetical protein DAPPUDRAFT_309030 [Daphnia pulex]
          Length = 1607

 Score =  322 bits (825), Expect = 9e-85,   Method: Compositional matrix adjust.
 Identities = 190/483 (39%), Positives = 264/483 (54%), Gaps = 84/483 (17%)

Query: 774  ENHTGPSPKRLETIGDSFLKYAITIFLY--CTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + H G   +R ETIGDS LK  I+I++Y         EG+LS +R +Q++N +LFKLG +
Sbjct: 1166 KTHEGFDMERSETIGDSILKLVISIYVYGETGSDRCDEGRLSLMRMRQINNKHLFKLGAK 1225

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            K  GE  +A +FE   N+LPPG+  P                                  
Sbjct: 1226 KDIGEFTVAQRFELMANFLPPGFKTP---------------------------------- 1251

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
                    D D  ++ +VQ  V            K++ADC+EALIG YL   G +GA+  
Sbjct: 1252 -------TDPDTDINAHVQQYVLM----------KNVADCMEALIGVYLTTTGIKGAIKL 1294

Query: 952  MSWLGLKVIP-------------PV--TNPESKHLSDV-----------LLDGFDKFEES 985
            M W+GLK +P             P+  +   S  L+D            L  G + FE+ 
Sbjct: 1295 MDWMGLKTVPRLEIATFNEMNGFPILPSTFGSSTLNDTQLKDQEEALSQLFAGLESFEKR 1354

Query: 986  INYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
            + Y FK+K+ L++A+THASY  N +T+CYQRLEFLGDA+LDYL+TR+ Y++   ++P  L
Sbjct: 1355 LRYTFKNKALLIEALTHASYIPNRITNCYQRLEFLGDAVLDYLVTRYYYDNPCQYTPAIL 1414

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            TDLRSA+VNN  FA +AV+  FH + KHLS  L+ ++ RFV+ Q EN   L   Y+++E 
Sbjct: 1415 TDLRSAMVNNETFAVMAVQNRFHLYLKHLSLSLNVILDRFVRSQEENGHLLMHNYFVLEE 1474

Query: 1106 ECDE----AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
              +     A +I+VPK LGD+FESVAGAI++DSGMSLD VWK Y   +   +E+ +  +P
Sbjct: 1475 TSEPHQSLASNIDVPKVLGDIFESVAGAIFVDSGMSLDAVWKSYLPFLHDALEKFNEKIP 1534

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCAL 1221
             S +R L E  P   +F K E LADG R+ V +E+ G   +KG G N   AK  AAK AL
Sbjct: 1535 ISALRVLHERYPNALKFRKSESLADG-RLCVAIEIQGTRVFKGAGGNSKTAKSAAAKYAL 1593

Query: 1222 KHL 1224
              L
Sbjct: 1594 SVL 1596



 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 165/487 (33%), Positives = 251/487 (51%), Gaps = 66/487 (13%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD------------------------ 36
           + ++I ++NRYC +L SD    LAP +T  ++ E D                        
Sbjct: 545 LPSSISLINRYCGQLSSDPDVSLAPQLTTKKVAESDVDPIQLQKIKDILKKLPTDASKYS 604

Query: 37  SI--MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVT 93
           SI  +F C + LP+NSPL+  V G  MPTK LA R  A++A   L+ELKEL DN L PV 
Sbjct: 605 SINNLFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIKLHELKELDDNHLFPVP 664

Query: 94  KEFINLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKM 152
           +  +N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+  
Sbjct: 665 R--LNVIDDESST--EDEENSAAPQLNKENIAVYNRRLPVCFSNCRPLPGQPCFVYAIDF 720

Query: 153 KLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKN 212
            LT P  D       K++ P      LAILT+K IP +C FP+ TR GE +V++   D +
Sbjct: 721 TLTKPCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVVTRAGEFQVNLCGAD-S 774

Query: 213 VVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
           V+L +  L     F  ++F  VL L K  + FD   S+  Y +VP  + +++  ID+   
Sbjct: 775 VILDQSQLGKLERFHQFVFQDVLFLWKRQLDFDVLASDLQYLVVPLQTANDK--IDF--- 829

Query: 273 TLISEHHN--DVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
            L+    N   +  + P    ++F+FD S+  D+V++P Y+       FYV  + +++ P
Sbjct: 830 ALVENMINAPAINWEKPPYAGDHFIFDSSRLIDSVIVPSYKPLGTLNAFYVDRV-SDLTP 888

Query: 331 RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
            + FP+  N ++T+  Y+ LKY L + N +Q LL V       NFL    VNR    +A+
Sbjct: 889 LTPFPN--NEFKTYASYFQLKYKLTLTNQQQQLLQVSREISGKNFL----VNR----VAS 938

Query: 391 TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           T EET             LV ELC +HP   S+W++ V LP IL+RL+ +L+A+E+R  V
Sbjct: 939 TREETPMH----------LVAELCHVHPLAGSIWKQVVWLPCILHRLDRMLVAEELRVLV 988

Query: 451 ASEIGLG 457
             E  +G
Sbjct: 989 YKEANIG 995


>gi|168177333|pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
            Dicer
          Length = 265

 Score =  318 bits (814), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 162/264 (61%), Positives = 205/264 (77%), Gaps = 3/264 (1%)

Query: 965  NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAI 1024
             P+++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TD YQRLEFLGDAI
Sbjct: 1    GPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAI 60

Query: 1025 LDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR 1084
            LDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  
Sbjct: 61   LDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDD 120

Query: 1085 FVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
            FVK Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW
Sbjct: 121  FVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVW 180

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
            +VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +VRVTVEV GKG +
Sbjct: 181  QVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKF 239

Query: 1203 KGIGRNYCIAKCTAAKCALKHLKS 1226
            KG+GR+Y IAK  AA+ AL+ LK+
Sbjct: 240  KGVGRSYRIAKSAAARRALRSLKA 263


>gi|379055825|emb|CCD32416.1| dicer-1, partial [Rhopalosiphum padi]
          Length = 318

 Score =  316 bits (810), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 190/272 (69%), Gaps = 35/272 (12%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL NH GPSP                  +RLETIGDSFLKYAIT +LYCT+ N
Sbjct: 47   FSFDFQPDLNNHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDN 106

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE ALI 
Sbjct: 107  VHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALIN 166

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  P SLWN ++LP  K+ + +++ E+I+Q  V        N    VPYNLVTQHSIPDK
Sbjct: 167  ASIPTSLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNDDLENTPLFVPYNLVTQHSIPDK 226

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESKHLSDV---- 974
            SIADCVEALIGAYLI CG RGALLFMSWLG++V+P + N        P S  L +V    
Sbjct: 227  SIADCVEALIGAYLISCGARGALLFMSWLGIRVLPSLDNSKLGYLKPPSSPLLRNVHDPE 286

Query: 975  -----LLDGFDKFEESINYRFKDKSYLLQAMT 1001
                 L++GF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 287  GELAKLMNGFESFEQHLGYRFQDRSYLLQAMT 318


>gi|379055823|emb|CCD32415.1| dicer-1, partial [Rhopalosiphum padi]
          Length = 318

 Score =  316 bits (809), Expect = 6e-83,   Method: Compositional matrix adjust.
 Identities = 162/272 (59%), Positives = 190/272 (69%), Gaps = 35/272 (12%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL NH GPSP                  +RLETIGDSFLKYAIT +LYCT+ N
Sbjct: 47   FSFDFQPDLNNHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDN 106

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE ALI 
Sbjct: 107  VHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALIN 166

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  P SLWN ++LP  K+ + +++ E+I+Q  V        N    VPYNLVTQHSIPDK
Sbjct: 167  ASIPTSLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNDDLENTPLFVPYNLVTQHSIPDK 226

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESKHLSDV---- 974
            SIADCVEALIGAYLI CG RGALLFMSWLG++V+P + N        P S  L +V    
Sbjct: 227  SIADCVEALIGAYLISCGARGALLFMSWLGIRVLPSLDNSKLGYLKPPSSPLLRNVHDPE 286

Query: 975  -----LLDGFDKFEESINYRFKDKSYLLQAMT 1001
                 L++GF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 287  GELAKLMNGFESFEQHLGYRFQDRSYLLQAMT 318



 Score = 40.0 bits (92), Expect = 7.9,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 53/101 (52%), Gaps = 19/101 (18%)

Query: 970  HLSDVLLDGFDKFE---ESINYRFK---------DKSYLLQA--MTHASYFLNTLTDCYQ 1015
            HL++  +D  +KF+   E+ ++ F+           S LLQA  M++A+  +N      +
Sbjct: 28   HLNNKAIDNINKFDIQNETFSFDFQPDLNNHPGPSPSVLLQALTMSNANDGINL-----E 82

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056
            RLE +GD+ L Y IT +LY        G L+ LRS  V+N+
Sbjct: 83   RLETIGDSFLKYAITAYLYCTHDNVHEGKLSHLRSKQVSNL 123


>gi|305354766|emb|CBL30926.1| Dicer protein [Echinococcus multilocularis]
          Length = 1981

 Score =  315 bits (808), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 189/503 (37%), Positives = 263/503 (52%), Gaps = 95/503 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLK+A+T+ L+  YP  HEG LS LRS+ V N NL++LG +K     ++  
Sbjct: 1522 ERLETIGDSFLKFAVTMDLFLRYPEAHEGHLSSLRSQIVGNSNLYRLGCEKNLPGRIVGM 1581

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             FEP +NWLPP Y                  +    S  N+           IK +C  L
Sbjct: 1582 AFEPHENWLPPCY------------------VCTTDSTNNIASTR-------IKNQCPSL 1616

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                             T   + +KS+ADCVE+L+G YL E G R AL  + W G++ +P
Sbjct: 1617 -----------------THQFLTNKSVADCVESLVGCYLTERGERSALKLLQWFGIECLP 1659

Query: 962  PVTN----------PESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMTH 1002
            P              E K LS V             F K EE I Y FK++  L++A TH
Sbjct: 1660 PAGEMQPAGSPWKLAEEKPLSKVEEATVERVYRAGRFSKLEEIIGYTFKNRRLLIEAFTH 1719

Query: 1003 ASY----------------FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH--SPGT 1044
            ++                  + +++  Y+RLEFLGDA+LDY +TR L+  +     SPG 
Sbjct: 1720 STCRDLHGPPSDDDGGFHGSVTSISGGYERLEFLGDAVLDYAVTRFLFTTDATARLSPGA 1779

Query: 1045 LTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE------------- 1091
            LTDLRSALVNN++F +LAVR G H F +  +P L   +  F++   +             
Sbjct: 1780 LTDLRSALVNNVVFGALAVRHGLHAFLRAAAPPLTRTMALFLRHHHDVVRGDLDVLIAPE 1839

Query: 1092 -NDFTLNQEYYLMEGECDEA-EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
             N    N+     + E D A E++EVPKALGD+FES+AGA++LDSG+ L+T+W+V++ ++
Sbjct: 1840 VNACRENKGATASQAEGDRANEEVEVPKALGDVFESLAGAVFLDSGLCLNTLWRVFFPLL 1899

Query: 1150 KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            +  IER S  V KSP+R LLEL PE  +F +P    DG ++RV V V G G Y G+GR Y
Sbjct: 1900 RERIERYSTCVAKSPVRRLLELCPERVKFERPMVRPDG-KMRVVVRVAGIGRYVGVGRTY 1958

Query: 1210 CIAKCTAAKCALKHLKSAKPADV 1232
             +AK  AA  A + +  A    V
Sbjct: 1959 RLAKSAAADLAYRRVTEASTEQV 1981



 Score =  174 bits (440), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 159/555 (28%), Positives = 236/555 (42%), Gaps = 96/555 (17%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPI--ITISEIKED-------------------------- 35
            AI +VN YCARLP +  TRLAP   +T   +  D                          
Sbjct: 833  AIDVVNHYCARLPCNFMTRLAPRWHLTTRRLTADSRGAVEGGDHTALLTCPDPSHAAIAS 892

Query: 36   DSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
            + I++ C++++PINSP++  V       K +A   AA+   ++L E +E+D    P+ + 
Sbjct: 893  NMIVYRCALQMPINSPIREVVWSEWSLCKKMAKYSAAVRVGQLLMETREIDARGRPILR- 951

Query: 96   FINLYENTEPVVPKTPEIETYPDST--KRRQFYHKRMASCFTNC-----RPSVNTPCYLY 148
                +     V   +  +    + +  K +  Y  +       C     R S+     LY
Sbjct: 952  ----HTPIAAVAAASRRLRATRERSPPKHKSSYLIKTPDSLVKCLAKEDRGSIGQN-RLY 1006

Query: 149  AVKMK-LTCPIPD---EQNKRGRKIHP---PENSPQGLAILTTKYIPKVCSFPIFTRCGE 201
             + ++ L  P+     EQ  +G   H    PE   +G A+LTTK +P +  F IFTR GE
Sbjct: 1007 LIDIRHLDTPLSRLQREQRSQGTSSHIDFFPEAENRGFAMLTTKPLPFIPEFSIFTRSGE 1066

Query: 202  VEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK-YLMLFDPNCSENSYFIVP--- 257
              V I        L+ + L+    F   +F  VL+ +K  LM F+   +     IVP   
Sbjct: 1067 ETVHIYEASSCPPLNIDQLNRLSRFHRIIFKSVLRFEKDCLMKFNLVDAPCQLLIVPVKR 1126

Query: 258  --------------TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE------------- 290
                          T+S    I+  +K   +   H  D    +  +              
Sbjct: 1127 GTTSFALSVESFHLTLSSDFDILSLFKICRVPILHLGDCRLPVRRRPAPPLQLPTGPVPL 1186

Query: 291  ----------RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT 340
                      R  F F    F +AV+ P YRN   P  +YV  +  ++ P + FPS    
Sbjct: 1187 TQLLSQTASPRTVFHFVRDDFVNAVLTPTYRNVEYPPRYYVVAVRNDLSPATEFPS--PQ 1244

Query: 341  YQTFEEYYSLKYGLQIQNL--EQPLLDVDHTSCRLN-FLTPR--YVNRKGINLATTSEET 395
            Y TF +YY+ KYGL++     +QPLLD  +   RL   L PR     RK  N   +   T
Sbjct: 1245 YATFADYYACKYGLRLSGAPSDQPLLDAAYAPLRLAPLLVPRGCVAQRKANNGVASGNAT 1304

Query: 396  RREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIG 455
                       QLLVPE C  H  PA++W+K++ LPSILYRL  LLLA+E+R+ +A E G
Sbjct: 1305 STSKHAIPRHIQLLVPEFCHRHAMPATVWQKAICLPSILYRLQHLLLAEELRSEIARETG 1364

Query: 456  LGKVILDEKVEWPPF 470
            LG V    +  +PP 
Sbjct: 1365 LGVVTPPHRFCFPPL 1379


>gi|379055865|emb|CCD32436.1| dicer-1, partial [Sitobion avenae]
          Length = 319

 Score =  315 bits (807), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/281 (58%), Positives = 193/281 (68%), Gaps = 36/281 (12%)

Query: 756  IRNTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAIT 797
            + N  T + FSFDFQPDL NH GPSP                  +RLETIGDSFLKYAIT
Sbjct: 40   VHNVQTET-FSFDFQPDLNNHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAIT 98

Query: 798  IFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857
             +LYCT+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP
Sbjct: 99   AYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVP 158

Query: 858  KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNL 917
              LE ALI A  P +LWN ++LP  K+ + +++ E I+Q  V        N    VPYNL
Sbjct: 159  HKLEKALINASIPTTLWNMITLPTFKDPTDKEIEEAIQQFKVGFSNQDIENTPLFVPYNL 218

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESK 969
            VTQHSIPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P S 
Sbjct: 219  VTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPPSSP 278

Query: 970  HLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
             L +V         L+DGF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 279  LLRNVDDPEGELTKLMDGFESFEQHLGYRFQDRSYLLQAMT 319


>gi|379055847|emb|CCD32427.1| dicer-1, partial [Myzus persicae]
          Length = 319

 Score =  315 bits (806), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/284 (57%), Positives = 194/284 (68%), Gaps = 40/284 (14%)

Query: 753  HGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKY 794
            HG+   T     FSFD+QPDL +H GPSP                  +RLETIGDSFLKY
Sbjct: 41   HGVRTET-----FSFDYQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKY 95

Query: 795  AITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY 854
            AIT +LYCT+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP Y
Sbjct: 96   AITAYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCY 155

Query: 855  FVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP 914
            FVP  LE ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VP
Sbjct: 156  FVPHKLEKALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNENIENTPLFVP 215

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------P 966
            YNLVTQHSIPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P
Sbjct: 216  YNLVTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPSLDDSKLGYLKPP 275

Query: 967  ESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
             S  L +V         L+DGF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 276  SSPLLRNVENPEGELIKLMDGFESFEQHLGYRFQDRSYLLQAMT 319


>gi|379055849|emb|CCD32428.1| dicer-1, partial [Myzus persicae]
          Length = 319

 Score =  314 bits (805), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 162/284 (57%), Positives = 194/284 (68%), Gaps = 40/284 (14%)

Query: 753  HGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKY 794
            HG+   T     FSFD+QPDL +H GPSP                  +RLETIGDSFLKY
Sbjct: 41   HGVRTET-----FSFDYQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKY 95

Query: 795  AITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY 854
            AIT +LYCT+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP Y
Sbjct: 96   AITAYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCY 155

Query: 855  FVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP 914
            FVP  LE ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VP
Sbjct: 156  FVPHKLEKALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNENIENTPLFVP 215

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------P 966
            YNLVTQHSIPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P
Sbjct: 216  YNLVTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPSLDDSKLGYLKPP 275

Query: 967  ESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
             S  L +V         L+DGF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 276  SSPLLRNVDNPEGELIKLMDGFESFEQHLGYRFQDRSYLLQAMT 319


>gi|379055851|emb|CCD32429.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055853|emb|CCD32430.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055855|emb|CCD32431.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055857|emb|CCD32432.1| dicer-1a, partial [Acyrthosiphon pisum]
 gi|379055859|emb|CCD32433.1| dicer-1a, partial [Acyrthosiphon pisum]
          Length = 319

 Score =  313 bits (801), Expect = 5e-82,   Method: Compositional matrix adjust.
 Identities = 162/284 (57%), Positives = 193/284 (67%), Gaps = 40/284 (14%)

Query: 753  HGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKY 794
            HG+   T     FSFDFQPDL +H GPSP                  +RLETIGDSFLKY
Sbjct: 41   HGVQTGT-----FSFDFQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKY 95

Query: 795  AITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY 854
            AIT +LYCT+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP Y
Sbjct: 96   AITAYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCY 155

Query: 855  FVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP 914
            FVP  LE ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VP
Sbjct: 156  FVPHKLEKALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDIENTPLFVP 215

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------P 966
            YNLVTQHSIPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P
Sbjct: 216  YNLVTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPP 275

Query: 967  ESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
             S  L +V         L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 276  SSPLLRNVDDPEGELTKLMDGFESFEQHLGYHFQDRSYLLQAMT 319


>gi|379055861|emb|CCD32434.1| dicer-1, partial [Aulacorthum solani]
 gi|379055863|emb|CCD32435.1| dicer-1, partial [Aulacorthum solani]
          Length = 319

 Score =  312 bits (800), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 162/284 (57%), Positives = 193/284 (67%), Gaps = 40/284 (14%)

Query: 753  HGIIRNTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKY 794
            HG+   T     FSFDFQPDL +H GPSP                  +RLETIGDSFLKY
Sbjct: 41   HGVQTET-----FSFDFQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKY 95

Query: 795  AITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY 854
            AIT +LYCT+ NVHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP Y
Sbjct: 96   AITAYLYCTHDNVHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCY 155

Query: 855  FVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP 914
            FVP  LE ALI A  P +LWN ++LP  K+ + +++ E+I+Q  V        N    VP
Sbjct: 156  FVPHKLEKALINASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDIENTPLFVP 215

Query: 915  YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------P 966
            YNLVTQHSIPDKSIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P
Sbjct: 216  YNLVTQHSIPDKSIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPP 275

Query: 967  ESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
             S  L +V         L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 276  SSPLLRNVDDPEGELTKLMDGFESFEQHLGYHFQDRSYLLQAMT 319


>gi|379055827|emb|CCD32417.1| dicer-1, partial [Aphis gossypii]
          Length = 319

 Score =  312 bits (799), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 161/272 (59%), Positives = 189/272 (69%), Gaps = 35/272 (12%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL+NH GPSP                  +RLETIGDSFLKYAIT +LYCT+ N
Sbjct: 48   FSFDFQPDLDNHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDN 107

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE ALI 
Sbjct: 108  VHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALIN 167

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  P SLWN ++LP  K+ + +++ E+I+Q  V        +    VPYNLVTQHSIPDK
Sbjct: 168  ASIPTSLWNMITLPTFKDPTDKEIEEVIQQFKVGFSNEDLESTPLFVPYNLVTQHSIPDK 227

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPP--------VTNPESKHLSDV---- 974
            SIADCVEALIGAYLI CG RGALLFMSWLG+KV+P         +  P S  L +V    
Sbjct: 228  SIADCVEALIGAYLISCGARGALLFMSWLGIKVLPSLDCSKLGYLKPPSSPLLRNVHNPE 287

Query: 975  -----LLDGFDKFEESINYRFKDKSYLLQAMT 1001
                 L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 288  GELTKLMDGFESFEQHLGYHFQDRSYLLQAMT 319


>gi|379055867|emb|CCD32437.1| dicer-1a, partial [Acyrthosiphon kondoi]
 gi|379055869|emb|CCD32438.1| dicer-1a, partial [Acyrthosiphon kondoi]
          Length = 319

 Score =  310 bits (793), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 157/272 (57%), Positives = 190/272 (69%), Gaps = 35/272 (12%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD+QPDL +H GPSP                  +RLETIGDSFLKYAIT +LYCT+ N
Sbjct: 48   FSFDYQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDN 107

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE ALI 
Sbjct: 108  VHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALIN 167

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  P +LWN ++LP  K+ + +++ E+I+Q           N    VPYNLVTQHSIPDK
Sbjct: 168  ASIPTTLWNMITLPTFKDPTDKEIEEVIQQFKNGFSNEDVENTPLFVPYNLVTQHSIPDK 227

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP-----------PVTNPESKHLSDV- 974
            SIADCVEALIGAYLI CG RGALLFMSWLG++V+P           P ++P  +++ D  
Sbjct: 228  SIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPPSSPLLRNVDDPE 287

Query: 975  -----LLDGFDKFEESINYRFKDKSYLLQAMT 1001
                 L+DGF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 288  GELTKLMDGFESFEQHLGYRFQDRSYLLQAMT 319


>gi|379055845|emb|CCD32426.1| dicer-1a, partial [Acyrthosiphon svalbardicum]
          Length = 319

 Score =  309 bits (792), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 158/272 (58%), Positives = 189/272 (69%), Gaps = 35/272 (12%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFD+QPDL +H GPSP                  +RLETIGDSFLKYAIT +LYCT+ N
Sbjct: 48   FSFDYQPDLNDHPGPSPSVLLQALTMSNANDGINLERLETIGDSFLKYAITAYLYCTHDN 107

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEGKLSHLRSKQVSN NL++LGK K+FGE MI+TKFEP DNWLPP YFVP  LE ALI 
Sbjct: 108  VHEGKLSHLRSKQVSNLNLYRLGKLKMFGERMISTKFEPHDNWLPPCYFVPHKLEKALIN 167

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  P +LWN ++LP  K+ + +++ E+I+Q           N    VPYNLVTQHSIPDK
Sbjct: 168  ASIPTTLWNKITLPTFKDPTDKEIEEVIQQFKNGFSNEDVENTPLFVPYNLVTQHSIPDK 227

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--------PESKHLSDV---- 974
            SIADCVEALIGAYLI CG RGALLFMSWLG++V+P + +        P S  L +V    
Sbjct: 228  SIADCVEALIGAYLISCGARGALLFMSWLGIRVLPTLDDSKLGYLKPPSSPLLRNVDDPE 287

Query: 975  -----LLDGFDKFEESINYRFKDKSYLLQAMT 1001
                 L+DGF+ FE+ + YRF+D+SYLLQAMT
Sbjct: 288  GELTKLMDGFESFEQHLGYRFQDRSYLLQAMT 319


>gi|168177328|pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
            Dicer
          Length = 265

 Score =  301 bits (771), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 159/263 (60%), Positives = 197/263 (74%), Gaps = 3/263 (1%)

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P+++   + L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TD YQRLEFLGDAIL
Sbjct: 2    PDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAIL 61

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  F
Sbjct: 62   DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 121

Query: 1086 VKMQAENDFTLNQEYYLMEG--ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            VK Q E +     +  L     + ++ EDIEVPKA GD+FES+AGAIY DSG SL+ VW+
Sbjct: 122  VKFQLEKNEXQGXDSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQ 181

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
            VYY   +  IE+ S +VP+SP+RELLE EPE A+FS  E+  DG +VRVTVEV GKG +K
Sbjct: 182  VYYPXXQPLIEKFSANVPRSPVRELLEXEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 240

Query: 1204 GIGRNYCIAKCTAAKCALKHLKS 1226
            G+GR+Y IAK  AA+ AL+ LK+
Sbjct: 241  GVGRSYRIAKSAAARRALRSLKA 263


>gi|345494561|ref|XP_001602524.2| PREDICTED: endoribonuclease Dicer [Nasonia vitripennis]
          Length = 1450

 Score =  301 bits (770), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/416 (41%), Positives = 242/416 (58%), Gaps = 22/416 (5%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+ET+GDSFLK+AI++FLY  YP   EG L+HL+ K V N NLF   KQK     M   
Sbjct: 1039 ERVETLGDSFLKFAISLFLYQAYPTCGEGPLTHLKGKLVGNLNLFYCSKQKNIAGRMHVE 1098

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLEIIKQKC 898
             F P  N++ P Y   + L+  L      A++   + +P  +  S        ++++ K 
Sbjct: 1099 DFAPTGNFVTPAYAAHQVLQQILRAEKVSANILYEIRVPAAERFSGCISNNTTDMMQDKV 1158

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
              L    D  V      + +    + DKS++DC EALIG YL+  G +GAL  + W   +
Sbjct: 1159 --LAWPSDEKVTHTGMEHFLGIQVVSDKSVSDCTEALIGTYLLHLGIKGALQILKWF--E 1214

Query: 959  VIPPVTNPESKHLSDV----LLDG--------FDKFEESINYRFKDKSYLLQAMTHASYF 1006
            ++P   N +    S+V    L DG            EE + Y+F+++++LLQA TH SY 
Sbjct: 1215 ILPKSLNVDQYLYSEVENPQLGDGDVNVHIPWAQTMEERLGYKFRNRAFLLQAFTHPSYM 1274

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
             N  T  YQRLEFLGDA+LD+L+T H+YE     SPG LTDLRSALVNNI FA LAVR G
Sbjct: 1275 PNRQTASYQRLEFLGDAVLDFLLTIHIYETCGNLSPGELTDLRSALVNNITFACLAVRYG 1334

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAENDFTLN---QEYYLMEGECDEAEDIEVPKALGDLF 1123
             H     L+P L ++I +FVK Q   ++ ++       L E EC+ AE ++VPK LGD++
Sbjct: 1335 LHTALLALAPKLFDLIDKFVKFQENRNYKIDDELLWVLLEEEECNMAEHVDVPKVLGDIY 1394

Query: 1124 ESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
            ESV GAI+LDSG +L+ VW+V Y +MK+EI+  S +VPK PIR + E +  N +FS
Sbjct: 1395 ESVIGAIFLDSGKNLEVVWQVIYNLMKNEIDLFSKNVPKQPIRVIHETQGANPKFS 1450



 Score =  147 bits (370), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 112/416 (26%), Positives = 211/416 (50%), Gaps = 35/416 (8%)

Query: 129 RMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIP 188
           R      +  P  N   YL+ + MK   P P++   R    +   ++ Q   IL+ K IP
Sbjct: 600 RYPEALCSAFPKPNESLYLHIIDMKPNYPRPNDN--RHLVFYNLLSNSQTYGILSAKKIP 657

Query: 189 KVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNC 248
           ++ SFPIF   G+++++I+  ++   L+E  +    +F   +F+K+LK+ K  M+FD + 
Sbjct: 658 EIPSFPIFMNIGDLQINIKSNNQLKSLTEMEIEQLKLFHTLVFSKILKVIKEFMIFDASN 717

Query: 249 SENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMP 308
            EN++ +VP    +E+  I+W  +     +   +I  I     EN V  ES++  A+V P
Sbjct: 718 MENNFLVVPI---NERGQINWDIV-----NRYKIIASI--SPSENLVVKESEYDLALVTP 767

Query: 309 WYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDH 368
            YR       + V ++   +   S FP  T+ Y ++  Y+  ++ ++I+N  QP+L+V  
Sbjct: 768 NYR---ASNMYIVTQVCEYLKAESSFP--TSDYNSYVHYFKERHYIEIKNPAQPMLEVKP 822

Query: 369 TSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSV 428
            S ++N   PR +       A  S+  R  + E    ++ LVPELC    FP+  W K+ 
Sbjct: 823 ISSKINCTKPRSIK------ANLSKRKRASLTEDF--EEHLVPELCDRIDFPSLYWLKAT 874

Query: 429 SLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTK 488
           +LPSIL+R++ L+ A+E+R  +A E  L    L+   +W P        ++ +++  +++
Sbjct: 875 TLPSILHRISQLIAAEELRVKIAHEAQLHISSLEAGKKWEPM-------QIVDQFSQNSE 927

Query: 489 DANDVIVDDTEVNDTKEDDSAVNEICTEIA-KVEIVDKKETVCDSGNEQENEDEEK 543
             +D   D++ +++  ED  A N +  + + +V+I+ ++ +      EQE  D ++
Sbjct: 928 SNSDTTFDESLMDE--EDLEAENLLVPDTSLEVDILSQERSSYSWSKEQEPTDLDR 981


>gi|350399948|ref|XP_003485689.1| PREDICTED: endoribonuclease Dicer-like [Bombus impatiens]
          Length = 1490

 Score =  297 bits (761), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 175/454 (38%), Positives = 254/454 (55%), Gaps = 27/454 (5%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   + +RLET+GD++LK+  ++FLY  +P   EG L+ L+ K + N NL+  G +K   
Sbjct: 1023 HDAFNLERLETLGDAYLKFITSLFLYNEFPKHSEGYLTALKGKIIGNRNLYYCGIKKNIP 1082

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLE 892
              M    F P  N++ P Y V + ++  L+ A    ++   + +P  ++LS    E    
Sbjct: 1083 GCMKVDSFIPLSNFIAPAYTVYRQVQDVLLHAKVSPNVLYEIEIPRDEQLSGHISEATKN 1142

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
             I+ K +D +       Q+ + + L  Q ++ DK++ADCVEALIG YL   G +  L+ +
Sbjct: 1143 AIQTKILDWETA---EAQTGMEHYLGIQ-TVSDKTVADCVEALIGVYLRSMGIKDTLILL 1198

Query: 953  SWLGLKVIP--------PVTNPESKHLSDV----LLDGFDKFEESINYRFKDKSYLLQAM 1000
             W   +++P            P++  +S+     L+      E  + YRF ++ YLLQA 
Sbjct: 1199 QWF--QILPYKIDANELLFGTPQNPIISEGNINHLMPWASNIETKLGYRFNNRGYLLQAF 1256

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            TH SY  N +T+CYQRLEFLGDAILD+LIT ++YE     +PG LTDLRSALVNNI FA 
Sbjct: 1257 THPSYTPNNMTECYQRLEFLGDAILDFLITNYIYESCGNLNPGALTDLRSALVNNITFAC 1316

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY---YLMEGECDEAEDIEVPK 1117
            L VR G H      +P L+ +I+RFVK Q E ++ +N E     L E EC+ AE ++VPK
Sbjct: 1317 LTVRHGLHIALLSYAPKLNNIIERFVKFQEERNYAVNDELLWILLEEDECNMAEHVDVPK 1376

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENAR 1177
             LGD+FESV GAIY+DS  +L  VW + Y IM  EI+  S ++PK PIR L E      +
Sbjct: 1377 VLGDIFESVIGAIYMDSNKNLTVVWNIVYSIMHKEIDEFSKNIPKQPIRVLYETHGARPQ 1436

Query: 1178 FSKPEKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
            F K   + +   V V ++V   G    + G G N
Sbjct: 1437 FLKATIIDNTNIVMVPLKVTIAGKVRHFYGFGAN 1470



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 169/324 (52%), Gaps = 39/324 (12%)

Query: 146 YLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS 205
           YL+ +      P P   N+     +   NS  G  IL+TK +P++ SFPIF R GE+ + 
Sbjct: 618 YLHILHATPKYPAPHHDNRYLTFYNLLHNSA-GFGILSTKQMPEIPSFPIFMRVGELNID 676

Query: 206 IELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCS-ENSYFIVPTVSDSEQ 264
           +++    ++L+EE +     F   +F+ ++ + K  M+FD NC+ +N + IVP   D + 
Sbjct: 677 VKVNHAKMILTEEEVIYLKRFHTLIFSDIVPVIKTFMVFD-NCNRDNCFLIVPVNEDWD- 734

Query: 265 IVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEI 324
             I+W+    +++ ++ +    P      F F  S +  A+V P YR       + V ++
Sbjct: 735 --INWE----VTKQYSSIEYISPPIP---FRFKSSDYELALVKPNYR---AADTYIVTQV 782

Query: 325 MTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRK 384
             ++ P S FP  T+ + T+  YY  K+ L I NLEQP+L+V   S  ++++ PR     
Sbjct: 783 CDDIMPSSCFP--TDHFSTYIHYYKEKHRLVINNLEQPMLEVKSISRAIDYIMPR----- 835

Query: 385 GINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLAD 444
                          + +  KK+ LVPELC+   FPA  W K+ +LPSIL+R++ LL+A+
Sbjct: 836 --------------DKSTESKKEHLVPELCIRINFPALYWLKATTLPSILHRVSQLLIAE 881

Query: 445 EIRTAVASEIGLGKVILDEKVEWP 468
           ++R  +A E GLG   L   ++WP
Sbjct: 882 DLRYIIAKESGLGT--LSNNMKWP 903


>gi|383856609|ref|XP_003703800.1| PREDICTED: endoribonuclease Dicer-like [Megachile rotundata]
          Length = 1441

 Score =  296 bits (759), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 167/415 (40%), Positives = 249/415 (60%), Gaps = 25/415 (6%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS+LK+ ++++LY  +PN +EG L+ L+ K + N NL+  G +K     M   
Sbjct: 1033 ERLETLGDSYLKFIVSLYLYTIFPNYNEGSLTVLKGKMIGNRNLYYCGIKKNIPGRMKVD 1092

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLEIIKQKC 898
             F    N++ P Y V + L+  L+E     ++   + +P  ++ +    E+    I++K 
Sbjct: 1093 DFIASSNFIAPAYTVFRQLQKQLLEKKVSPNVLYEIQIPKHEQFNGSISEETGIKIQEKV 1152

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
            ++ +       Q+ + + L  Q ++PDK++ADCVEALIG YL   G + A+  + W   +
Sbjct: 1153 LNWETA---ESQTGMEHYLGIQ-TVPDKTVADCVEALIGVYLENLGIKNAITLLKWF--Q 1206

Query: 959  VIPPVTNPESKHLSD-----VLLDGFDKF-------EESINYRFKDKSYLLQAMTHASYF 1006
            ++P  T+   + L D     V+ +  ++F       E  + YRF++++ LLQA TH SY 
Sbjct: 1207 ILPNETDAH-RLLHDISENIVVDENINRFMPWASDIETKLGYRFENRALLLQAFTHPSYT 1265

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
             N +T+CYQRLEFLGDAILD+LIT ++YE+    +PG LTDLRSALVNNI FA L+VR G
Sbjct: 1266 ANNVTECYQRLEFLGDAILDFLITCYIYENCGNLTPGALTDLRSALVNNITFACLSVRYG 1325

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY---YLMEGECDEAEDIEVPKALGDLF 1123
             H      +P L++VI RFVK Q E D  +N E     L E EC+ AE ++VPK LGDL+
Sbjct: 1326 LHTALLAYAPNLNDVIHRFVKFQEERDHIVNDELLWILLEEDECNMAEHVDVPKVLGDLY 1385

Query: 1124 ESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
            ESV GAIYLDSG +L   W++ Y  M  EI+  S ++PK P+R L E +    +F
Sbjct: 1386 ESVIGAIYLDSGKNLRKTWEIIYSFMHKEIDEFSKNIPKQPVRVLYETQGAQPQF 1440



 Score =  167 bits (423), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/343 (32%), Positives = 189/343 (55%), Gaps = 27/343 (7%)

Query: 129 RMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIP 188
           +  S   +  P      YL+   +K   P+P + N+     +   NS  G  IL+ K +P
Sbjct: 599 KFPSALYSAFPLPEKQLYLHLFDVKPKYPVPHDDNRHLVFYNLLHNSA-GFGILSAKPMP 657

Query: 189 KVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNC 248
           K+ SFPIF    E+ VS+++ +  +VLSEE +    IF   +F++++++ K  MLFD + 
Sbjct: 658 KIPSFPIFMSANELNVSVKVNNTTLVLSEEEIEYIKIFHTLIFSQIVQVIKSFMLFDNSN 717

Query: 249 SENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMP 308
            +N + +VP V ++E+  I+W+   +I EH++  ++ IP      F F  S +  A+V+P
Sbjct: 718 RDNCFLVVP-VDENEK--INWE---VIKEHNS--VERIPPSIP--FRFKNSDYELALVIP 767

Query: 309 WYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDH 368
            YR    P  + V +I  ++ P S FP  T+ + ++  YY  K+GL I +L+QP+L+V  
Sbjct: 768 TYRP--SPDVYIVTQICEDLTPNSCFP--TDNFFSYAHYYKEKHGLIINDLKQPMLEVKA 823

Query: 369 TSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK-KQLLVPELCLIHPFPASLWRKS 427
            S ++N++ PR +              +R+I +     K+ LVPELC+   FPA  W K+
Sbjct: 824 ISRKINYIKPRRMQNNS---------KKRKIADVYKDFKEHLVPELCIRITFPALYWLKT 874

Query: 428 VSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
             LPSIL+R++ LL+A+++R+ +A E  LG  +  +  EWPP 
Sbjct: 875 TLLPSILHRVSQLLIAEDLRSTIALETNLG--LSSQANEWPPL 915


>gi|340712553|ref|XP_003394821.1| PREDICTED: endoribonuclease Dicer-like [Bombus terrestris]
          Length = 1488

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 176/454 (38%), Positives = 253/454 (55%), Gaps = 27/454 (5%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   + +RLET+GDS+LK+  ++FLY  +P   EG L+ L+ K + N NL+  G +K   
Sbjct: 1021 HDAFNLERLETLGDSYLKFITSLFLYNEFPKHSEGYLTALKGKIIGNRNLYYCGIKKNIP 1080

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLE 892
              M    F P  N++ P Y V + ++  L+ A    ++   + +P  ++L     E    
Sbjct: 1081 GCMKVDSFIPLSNFIAPAYTVYRQVQDVLLYAKVSPNVLYEIEIPRDEQLCGNISEATKN 1140

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
             I+ K +D +       Q+ + + L  Q ++ DK++ADCVEALIG YL   G +  L+ +
Sbjct: 1141 AIQAKILDWEAA---EAQTGMEHYLGIQ-TVSDKTVADCVEALIGVYLRSMGIKDTLILL 1196

Query: 953  SWLGLKVIPP--------VTNPESKHLSDV----LLDGFDKFEESINYRFKDKSYLLQAM 1000
             W   +++P            P++  +S+     L+      E  + Y+F ++ YLLQA 
Sbjct: 1197 QWF--QILPHKIDANELLFGTPQNPIISEGNVNHLMPWASNIETKLGYQFNNRGYLLQAF 1254

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            TH SY  N +T+CYQRLEFLGDAILD+LIT ++YE     +PG LTDLRSALVNNI FA 
Sbjct: 1255 THPSYTPNNMTECYQRLEFLGDAILDFLITNYIYESCGNLNPGALTDLRSALVNNITFAC 1314

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY---YLMEGECDEAEDIEVPK 1117
            L VR G H      +P L+ VI+RFVK Q E ++ +N E     L E EC+ AE ++VPK
Sbjct: 1315 LTVRHGLHIALLSYAPKLNNVIERFVKFQEERNYAVNDELLWILLEEDECNMAEHVDVPK 1374

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENAR 1177
             LGD+FESV GAIYLDS  +L  VW + Y IM  EI+  S ++PK PIR L E      +
Sbjct: 1375 VLGDIFESVIGAIYLDSNKNLSVVWNIVYSIMHKEIDEFSKNIPKQPIRVLYETHGARPQ 1434

Query: 1178 FSKPEKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
            F K   + +   V V ++V   G    + G G N
Sbjct: 1435 FLKATVIENTNIVMVPLKVTIAGKVRHFYGFGAN 1468



 Score =  149 bits (376), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 101/324 (31%), Positives = 170/324 (52%), Gaps = 39/324 (12%)

Query: 146 YLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS 205
           YL+ +      P+P   N+     +   NS  G  IL+TK +P++ SFPIF R GE+ + 
Sbjct: 618 YLHILHATPKYPVPHHDNRYLTFYNLLHNSA-GFGILSTKQMPQIPSFPIFMRVGELNID 676

Query: 206 IELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCS-ENSYFIVPTVSDSEQ 264
           +++    ++L+EE +     F   +F+ ++ + K  M+FD NC+ +N + IVP   D + 
Sbjct: 677 VKVNHAKMILTEEEVIYLKRFHTLIFSDIVSVIKTFMVFD-NCNRDNCFLIVPVNEDWD- 734

Query: 265 IVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEI 324
             I+W+    +++ +N +    P      F F  S +  A+V P YR       + V ++
Sbjct: 735 --INWE----VTKQYNSIEYISPSVP---FCFKSSDYELALVKPNYR---AADTYIVTQV 782

Query: 325 MTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRK 384
             ++ P S FP  T+ + T+  YY  K+ L+I NLEQP+L+V   S  ++++ PR     
Sbjct: 783 CDDITPSSCFP--TDHFSTYIHYYKEKHRLEINNLEQPMLEVKSISRAIDYIMPR----- 835

Query: 385 GINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLAD 444
                          + +  KK+ LVPELC+   FPA  W K+ +LPSIL+R++ LL+A+
Sbjct: 836 --------------DKSTESKKEHLVPELCIRINFPALYWLKATTLPSILHRVSQLLIAE 881

Query: 445 EIRTAVASEIGLGKVILDEKVEWP 468
           ++R  +A E  LG   L   ++WP
Sbjct: 882 DLRYVIAKESDLGT--LSNNMKWP 903


>gi|332029751|gb|EGI69620.1| Endoribonuclease Dcr-1 [Acromyrmex echinatior]
          Length = 1257

 Score =  296 bits (758), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 181/455 (39%), Positives = 257/455 (56%), Gaps = 42/455 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS+LK+ +++FLY  +P  +EG+L+ L+ K + N NL+  G +K     +   
Sbjct: 796  ERLETLGDSYLKFIVSLFLYHKFPTFNEGQLTALKGKMIGNRNLYYCGNKKGIPGRIKND 855

Query: 842  KFEPRDNWLPPGYFVPKYLETALI-EAGFPASLWNCLSLPNLKELS---PEKVLEIIKQK 897
             F P  N++PP Y V   L+  L+ E   P  L+  L +PN++  +    E  L ++KQ 
Sbjct: 856  AFVPMSNFIPPAYSVYHPLQKILMDELVAPNVLYEFL-IPNMERFTGYISEDTLNMMKQT 914

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
                D     + Q+ V + L  Q  + DK++AD VEALIG YL     +GA   + W G 
Sbjct: 915  VSSWD---KRDKQTGVEHYLGVQ-ILSDKTVADSVEALIGVYLKNNHIKGAAKLLKWFG- 969

Query: 958  KVIPPVTNPESKHLSDVLLDGF------------------DKFEESINYRFKDKSYLLQA 999
             ++P V         D+LL                     D  E  I Y+FK++++LLQA
Sbjct: 970  -ILPDVK-------IDMLLGSISQNPVIGVGDPNYYMPWADTLESKIGYKFKNRAFLLQA 1021

Query: 1000 MTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA 1059
             TH SY  N +T+CYQRLEFLGDAILD+LIT ++YE++   SPG LTDLRSALVNNI FA
Sbjct: 1022 FTHPSYTANGITECYQRLEFLGDAILDFLITCYIYENDVNLSPGDLTDLRSALVNNITFA 1081

Query: 1060 SLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE--YYLM-EGECDEAEDIEVP 1116
             L+VR G H      +P LHE+I  FV+ Q E D+ +N E  Y L+ E EC+  E ++VP
Sbjct: 1082 CLSVRHGLHTALLAYAPKLHEIIDCFVRFQEERDYVVNDELLYVLIEEDECNITEYVDVP 1141

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA 1176
            K LGDLFES+ GAIYLDSG +L  VW++ Y  M  EI+  S ++PK PIR + E      
Sbjct: 1142 KVLGDLFESLIGAIYLDSGKNLTKVWEIIYSFMHKEIDEFSRNIPKQPIRVIYENTDICP 1201

Query: 1177 RFSKPEKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
            +F +   +     + V +++   G    + G G N
Sbjct: 1202 KFLEATLIKGTGMIMVPLKITIAGKEKLFHGFGVN 1236



 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/460 (30%), Positives = 222/460 (48%), Gaps = 68/460 (14%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           AI ++N YCA L +  F  L PI  +   K+D   M+  S++LP  SPLK  + G  M +
Sbjct: 257 AIDLINMYCAALLTSKFVYLVPIWKLD--KDDSKNMYRISLKLPNLSPLKDVIYGDFMRS 314

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
              A R  AM+ C  L++L  L                             TYP +    
Sbjct: 315 IDGAKRSVAMKTCIQLHKLGAL-----------------------------TYPIA---- 341

Query: 124 QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILT 183
                     F    P      YL+        P+    N+R    +   N   G  IL+
Sbjct: 342 ----------FYGAYPQPLRSLYLHVFDCTSLYPVTGYDNRR-VIFYNLLNDKSGFGILS 390

Query: 184 TKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLML 243
           TK +PK+ SFPIF + GE+ V ++     +VLS+ N+     F   LF++++ + K  M+
Sbjct: 391 TKRLPKIPSFPIFMKDGELNVDVKSNHATIVLSQNNIELLKRFNFLLFSEIIPVIKSFMI 450

Query: 244 FDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRD 303
           FD +  ENS+ IVP ++D ++  I+W+    I E + D+ +  P      F F  S +  
Sbjct: 451 FDNDNLENSFVIVP-LNDKQE--INWE----IVETYQDLERITPNIP---FHFRTSDYEL 500

Query: 304 AVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPL 363
           A+V P YR  +   Y  V  +  ++ P S FP+    + T+  YY  K+GL I+NL+Q +
Sbjct: 501 ALVAPNYR--YNAVYI-VTRVCDDLTPESYFPNE--DFDTYTHYYKEKHGLIIENLQQSM 555

Query: 364 LDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASL 423
           L+V     ++N++ PR ++   +    T ++T  +++E       LVPELC    FP+  
Sbjct: 556 LEVKPIPIKINYIKPRKLSEGPLKNKKT-DDTVEDLQEH------LVPELCYKINFPSVY 608

Query: 424 WRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDE 463
           W K+ +LPSIL+R+  +L+A+++R  +A E  LG +IL E
Sbjct: 609 WLKATTLPSILHRICQILIAEDLRVTIARETKLGTLILKE 648


>gi|380026731|ref|XP_003697097.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer-like [Apis
            florea]
          Length = 1362

 Score =  295 bits (755), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 175/442 (39%), Positives = 251/442 (56%), Gaps = 42/442 (9%)

Query: 773  LENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSH 814
            L+N  GP P                  +RLET+GDS+LK+ I++FLY  +P   EG L+ 
Sbjct: 926  LKNSCGPDPVQVMYALTTKLGNDAFNLERLETLGDSYLKFIISLFLYNQFPKYAEGSLTT 985

Query: 815  LRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLW 874
            ++ K + N NL+  G  K     M    F P  N++ P Y V + L+  L+EA    ++ 
Sbjct: 986  IKGKIIGNRNLYYCGIXKNIPGRMKVDSFVPLSNFIAPAYTVFRQLQDVLLEAKVSPTVL 1045

Query: 875  NCLSLPNLKELS---PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADC 931
              + +   ++ S    E    +I+QK ++ +       Q+ + + L  Q ++ DK++ADC
Sbjct: 1046 YEIQISQQEQFSGLMTETTKNLIQQKVLNWELA---ESQTGMEHYLGIQ-TVSDKAVADC 1101

Query: 932  VEALIGAYLIECGPRGALLFMSWLGLKVIP-----------PVTNPE-SKHLSDVLLDGF 979
            VEALIG YL   G +  L  + W   +++P              NP  SK   + L+   
Sbjct: 1102 VEALIGVYLRNMGIKDTLTLLKWF--QILPNEIDSNTLLFGTSENPIISKGDINSLMPWA 1159

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
             + E  + Y+FK++ YLLQA TH SY  N +T+CYQRLEFLGDAILD+LIT ++YE+   
Sbjct: 1160 SEIETKLGYKFKNRGYLLQAFTHPSYSANHMTECYQRLEFLGDAILDFLITSYIYENCGN 1219

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             +PG+LTDLRSALVNNI FA L VR G H      SP L+++I+RFVK Q E +  +N E
Sbjct: 1220 LNPGSLTDLRSALVNNITFACLTVRHGLHIALLCYSPKLNDIIERFVKFQEERNHIVNDE 1279

Query: 1100 Y---YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
                 L E EC+ AE ++VPK LGD+FES+ GAIYLDS  +L  VW++ Y IM  EI+  
Sbjct: 1280 LLWILLEESECNIAEHVDVPKVLGDIFESIIGAIYLDSNKNLMVVWEIIYSIMHKEIDEF 1339

Query: 1157 SVSVPKSPIRELLELEPENARF 1178
            S ++PK PIR L E +  + +F
Sbjct: 1340 SKNIPKQPIRILYETQGAHPQF 1361



 Score =  142 bits (359), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 169/339 (49%), Gaps = 27/339 (7%)

Query: 132 SCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVC 191
           S   +  P      YL+ +      P+P + N+     +   NS  G  IL+ K +P++ 
Sbjct: 525 SALYSAFPLPQNTVYLHILHAIPKYPVPHDDNRYLVFYNLLCNSA-GFGILSAKQMPQIP 583

Query: 192 SFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSEN 251
           SFPIF   GE+ V +++    ++LSEE +    +F   +F++++ + K  M+FD    +N
Sbjct: 584 SFPIFMNIGELNVDVKVNHATMILSEEEVRFIKVFHTLIFSEIIPVIKSFMVFDNFNFDN 643

Query: 252 SYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYR 311
            + I P     E+  I+W+ +      H   I+ I       F F  + +   +V P YR
Sbjct: 644 CFLITPV---DEKWNINWQVIK-----HYKCIEYISPIAP--FDFKSTDYELTLVKPNYR 693

Query: 312 NQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSC 371
                  + V ++  ++ P S FP  T+ + ++  YY  K+GL I+NL+QP+L+V   S 
Sbjct: 694 ---AAETYIVTQVCDDITPNSCFP--TDNFLSYAHYYKEKHGLTIKNLKQPMLEVKAISR 748

Query: 372 RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLP 431
            +N++ PR++  +  N        RR +      K+ LVPELC    FPA  W K+  LP
Sbjct: 749 TINYILPRHMQSESKN--------RRYVDLPKNMKEHLVPELCTKINFPALYWLKATILP 800

Query: 432 SILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
           SIL+R++ LL+A+++R  +A E  LG   L    +W P 
Sbjct: 801 SILHRISQLLVAEDLRYTIAKETNLG---LLSNNKWVPL 836


>gi|380706515|gb|AFD97515.1| dicer, partial [Hymenolepis microstoma]
          Length = 1897

 Score =  295 bits (754), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/508 (35%), Positives = 258/508 (50%), Gaps = 111/508 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLETIGDSFLK+A+T +LY  YP+  EG LS  RS  V N NL++ G  K     ++  
Sbjct: 1433 ERLETIGDSFLKFAVTTYLYLKYPDAQEGSLSLFRSHVVENSNLYRFGCGKKLPGRIVGV 1492

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             FEP++NWLPP Y       +A                                      
Sbjct: 1493 AFEPQENWLPPCYVCNSDNSSA-------------------------------------- 1514

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                   +Q V  +  ++  SI     ADCVEAL+G YL E G R AL  + W G++ +P
Sbjct: 1515 --DDSSRLQMVQTHQFLSNKSI-----ADCVEALVGCYLTERGERSALKLLQWFGVECLP 1567

Query: 962  PVTN----------PESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMTH 1002
            P +           P+ + L++           +  +DK E +I YRFK++  L++A+TH
Sbjct: 1568 PSSEMQPTGAPWKMPDERGLTEAEKIEIDRIYHVSRYDKLENTIGYRFKNRRLLIEALTH 1627

Query: 1003 AS-----------------YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE-----RAH 1040
            ++                 +F N     Y+RLEFLGDA+LDY +TR L+E       R  
Sbjct: 1628 STCRDLHSNPSVNNTPSSVFFGN---GGYERLEFLGDAVLDYTVTRVLFESTDGETVREL 1684

Query: 1041 SPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKHLSPGLHEVIQRFVK-MQAENDFTLNQ 1098
            SPG LTDLRSALVNN +F +LAV   G H + +  +P L E    F++ ++  +  +LN 
Sbjct: 1685 SPGGLTDLRSALVNNAVFGALAVTHCGLHAYLRGTAPYLTEGTSAFLRHIRNVSRGSLNS 1744

Query: 1099 EYYL------------MEGECDEAE-------DIEVPKALGDLFESVAGAIYLDSGMSLD 1139
            +  L             E + D          + EVPKALGD+FES+AGA++LDSG+ L+
Sbjct: 1745 KRLLTPDSNTVARLNDAENQADSGAVRPSNEMEAEVPKALGDVFESLAGAVFLDSGLCLN 1804

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGK 1199
            T+W++++ +++  IER S  V KSP+R LLE  PE  +F KP    DG ++R+ V V G 
Sbjct: 1805 TLWRIFFPLLRERIERYSTCVAKSPVRRLLEQYPERVKFEKPMVRPDG-KIRLVVRVVGI 1863

Query: 1200 GSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
            G Y GIGR Y +AK  AA  A +  K A
Sbjct: 1864 GRYVGIGRTYRLAKSAAADLAYRRAKEA 1891



 Score =  162 bits (411), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 235/535 (43%), Gaps = 94/535 (17%)

Query: 4    AIFIVNRYCARLPSDIFTRLAP---------------------IITISEI-KEDDSIMFT 41
            AI ++N YCARLP +  TRLAP                     I+T  +   +D  + + 
Sbjct: 766  AIDVINHYCARLPCNFMTRLAPRWNLISRPLVDVKSELGDSGKILTCPDTDHKDPKVAYR 825

Query: 42   CSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE 101
            C++++P NSP+ + V G     K +A   A++    +L E +E+ N    + +       
Sbjct: 826  CALQMPSNSPINQVVWGDWSVCKKMAKYSASVRVGHLLLEAREISNSGRAILR------- 878

Query: 102  NTEPVVPKTPEIETYPDS-TKRRQFYHKRMASCFTNCRP-----SVNTPCYLYAVKMK-L 154
            ++  + P     E+   S  K +  Y  +    F  C P     S  +  YLY + ++ L
Sbjct: 879  HSSIIGPSRIIRESRCRSPVKTKSSYLIKTPDAFVRCLPKEDLNSTTSQNYLYLIDVRHL 938

Query: 155  TCPIPDEQNKRGRK-------IHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIE 207
               +   Q +R  K       +  PE+  +  A LT+K +P V  F IFTR GE  VSI 
Sbjct: 939  DSVLTHLQQQRKHKGTSSASLLFYPESENRIFAFLTSKRLPYVPDFSIFTRSGEETVSIY 998

Query: 208  LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK-YLMLFDPNCSENSYFIVPTVSDSEQIV 266
              +    L+   L+    F   LF  VL+++K  LM F    ++    I+P   DS++I 
Sbjct: 999  EANSCPCLNINQLNRLSNFHRILFKSVLRVEKDTLMTFCLPEAQCQILIIPVKLDSQEI- 1057

Query: 267  IDWKFMTLISEHHNDVIQD---------------------------IPEKERENFVFDES 299
             DW  + L     +  + D                            P+  +  F F   
Sbjct: 1058 -DWDLVDLCLSTFDPAVGDCRMPIRRRPTPPFRISEEPFPLTQLLSTPDSSQTVFDFVPE 1116

Query: 300  KFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNL 359
             F +AV+ P YR    P  +YV  I  ++ P S FPS    +  F +YY  KYGL +   
Sbjct: 1117 DFANAVLTPTYRLVDFPPRYYVVTIRNDLSPASRFPS--PQFSNFADYYRSKYGLHLSGS 1174

Query: 360  --EQPLLDVDHTSCRL-NFLTPRYV------------NRKGINLATTSEETRREIRESLG 404
              +QPLLD  +   RL + L PR +            N  G      +  +R   R    
Sbjct: 1175 AKDQPLLDAAYAPLRLASLLVPRCLAAAAAAAQRKAANSGGGGKKENTNSSRGAPRHV-- 1232

Query: 405  KKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
              QLLVPE C  H  PA++W+K+V LPSILYRL+ LLLA+E+R+ +A E G+G V
Sbjct: 1233 --QLLVPEFCYRHALPATVWQKAVCLPSILYRLHHLLLAEELRSEIARETGMGIV 1285


>gi|167234451|ref|NP_001107840.1| Dicer-2 [Tribolium castaneum]
 gi|270002830|gb|EEZ99277.1| hypothetical protein TcasGA2_TC001108 [Tribolium castaneum]
          Length = 1623

 Score =  293 bits (751), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 176/474 (37%), Positives = 271/474 (57%), Gaps = 43/474 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDSFLK+  ++++   +P  +EGK + L+ K VSN NL+ LG +K  G  +  +
Sbjct: 1162 ERLETLGDSFLKFVASLYIIFKFPTYNEGKSTTLKGKLVSNKNLYYLGVRKNLGGILKNS 1221

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPA-SLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
               P D W+PP + +P+ +  A+    +   SL+NC   P       E+V   + +K + 
Sbjct: 1222 DLSPSD-WVPPCFCIPQTISKAIGNKEYSVVSLFNCCISPE------EQVSGNLNRKTLS 1274

Query: 901  LDCTVDMNVQSVVP---------YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
                 DM  + + P          N + +  + DKSIAD VEAL+GAY +  G +G + F
Sbjct: 1275 -----DMTTEEIAPDEENSYGNMCNFLNKQYVGDKSIADSVEALLGAYFLSGGIQGGIKF 1329

Query: 952  MSWLGL--------------KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLL 997
            M W+G+              +V P +    +K   D  +  + + E+ + Y F ++++LL
Sbjct: 1330 MEWIGILPLSEQIQRLIETTQVDPVLNKKSTKTDVDFHMPQWREIEQRLGYTFTNRAFLL 1389

Query: 998  QAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057
            QA+TH+SY  N +T  Y+RLEFLGDA+LD+LIT +++E      PG +TDLRS+LVNN  
Sbjct: 1390 QALTHSSYSPNRITLSYERLEFLGDAVLDFLITCYIFEHCGHLEPGQVTDLRSSLVNNNT 1449

Query: 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM--EGECDEAEDIEV 1115
            FASL VR GFH F   ++  L   I +F    A  ++ ++ E  ++  E E + AE ++V
Sbjct: 1450 FASLVVRCGFHKFLLMMNSNLQGHIDKFADYLASKNYVIDDEVLILLEEDEMNIAEYVDV 1509

Query: 1116 PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPEN 1175
            PK LGD+FE++AGAIYLDS   L TVW+V+Y+I+  EI+  S +VPK+ IR L E     
Sbjct: 1510 PKVLGDIFEALAGAIYLDSNKDLKTVWRVFYKIIWREIDLFSKNVPKNVIRRLYECHTVY 1569

Query: 1176 -ARFSKPEKLADGRRVRVTVEVFGKGSYK---GIGRNYCIAKCTAAKCALKHLK 1225
              +FSK  ++ + ++  V+++   +G  K   G G N  +AK  AAK AL+ LK
Sbjct: 1570 PPQFSKALEVGN-QKTMVSLDFMCEGRKKRVHGFGTNKILAKRAAAKIALRALK 1622



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/464 (28%), Positives = 208/464 (44%), Gaps = 39/464 (8%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           M +A+ ++ RYC+ L SD +T  AP     E  +  S      I LP+  PL   + G  
Sbjct: 562 MTSAVALLCRYCSNLASDKYTTYAPEWYYEE--DSSSAKLRVVIFLPVVCPLIDPIVGPY 619

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTP-EIETYPDS 119
           M  K  A R AA+ AC  L++  ELDN+L+P  K+      +   +    P E E+   +
Sbjct: 620 MHNKKDAKRAAALVACIKLHQCGELDNNLLPWKKQLDE--ADVSYLFTHWPQEKESDAGN 677

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTPC------YLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
            K+++ + K +A       PSV +        YL+ + +       D+  K    I+   
Sbjct: 678 KKKKRLHDKEIA-------PSVKSAIQPDRVLYLHTININPQYKRSDDL-KNAVTIYDLY 729

Query: 174 NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
            +P    +L+ K +P +C FP+F   G +E+ I    + V  +   +     F   +F  
Sbjct: 730 KTPLKFGLLSPKPLPDLCKFPLFDSNGTLEIEIRNNVREVEFAANEMKEMREFHFLVFND 789

Query: 234 VLKLKKYLMLFDPNCSENS--YFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
           +L++ K  ++FD N   NS    +VP       + +D++ +       N +  +    ER
Sbjct: 790 LLEILKEFLIFD-NTGMNSEMLLVVPVQDRCGDVCVDFRVIRDNKNLKNKL--EPAATER 846

Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            N    E  +   +V PWYR+   P  + V ++  +    S FP+  + Y  F  YYS K
Sbjct: 847 INLNVTEETYLHKIVSPWYRS--PPKMYVVTKVCPDKSALSRFPN--HEYPNFVSYYSEK 902

Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
           + L I +  QPLL V   S RLN   PR     G       E+   E+ E       L+P
Sbjct: 903 HSLSILDPSQPLLLVKGLSERLNAFKPR-----GAGGKRKKEKMYEELEE------YLIP 951

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIG 455
           EL +   FP+ LW ++  LPSIL RL  LL   +++  +A  IG
Sbjct: 952 ELVIKQEFPSCLWIQARFLPSILSRLAYLLKLQQLQVDIARGIG 995


>gi|307198394|gb|EFN79336.1| Endoribonuclease dcr-1 [Harpegnathos saltator]
          Length = 1479

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 166/423 (39%), Positives = 244/423 (57%), Gaps = 40/423 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS+LK+  ++FLY T+P + EG+L+ ++ + + N NL+  G  K     +   
Sbjct: 1070 ERLETLGDSYLKFITSLFLYHTFPMLSEGQLTAIKGRIIGNRNLYYNGVNKGIPGRLKID 1129

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   ++ P Y V + L+  L++    +++   L +P+ + L+ +    I       +
Sbjct: 1130 EFAPMSTFIVPAYTVFRPLQKTLLDQDVSSNILYELPVPDEERLTGD----ISASTSNTI 1185

Query: 902  DCTVDM----NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
              T+       +Q+ + + L  Q  I DK+I+D +EALIG YL   G  GA   + W G 
Sbjct: 1186 QNTISQWSLAEIQTGMEHYLNIQ-IISDKAISDSIEALIGVYLRNTGISGAAKLLKWFG- 1243

Query: 958  KVIPPVTNPESKHLSDVLLDG-------------------FDKFEESINYRFKDKSYLLQ 998
             ++P +         D LL+G                    D  E+ + Y+F +++YLLQ
Sbjct: 1244 -ILPDIK-------IDELLNGTNSSNPIIGIGNPNEHMPWADSIEKRLGYKFNNRAYLLQ 1295

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A TH SY +N +TDCYQRLEFLGDA+LD+LIT H+YE     SPG LTDLRSALVNNI F
Sbjct: 1296 AFTHPSYSVNRITDCYQRLEFLGDAVLDFLITCHIYEFCGNLSPGALTDLRSALVNNITF 1355

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ---EYYLMEGECDEAEDIEV 1115
            A LAVR G H      +P LHE+I RFVK Q + ++ +N       L E +C+ AE I+V
Sbjct: 1356 ACLAVRYGLHTCLLAYAPQLHEMINRFVKFQEDRNYAINDELLWVLLEEEDCNIAEYIDV 1415

Query: 1116 PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPEN 1175
            PK LGDLFE++ GAIYLDS  +L  VW++ Y  M  EI+  S +VPK+P+R + E +  +
Sbjct: 1416 PKVLGDLFETLIGAIYLDSNRNLAKVWEMVYSFMHKEIDEFSRNVPKNPVRVIYEHQDAH 1475

Query: 1176 ARF 1178
            A+F
Sbjct: 1476 AKF 1478



 Score =  164 bits (414), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 115/365 (31%), Positives = 190/365 (52%), Gaps = 39/365 (10%)

Query: 139 PSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTR 198
           P      YL+ +    T  +P   + R    +   N   G  IL+TK +PK+ SFPIF  
Sbjct: 644 PHYGVKLYLHVLHASPTYSVP--YDNRHLVFYNLLNDKSGFGILSTKSMPKIPSFPIFMN 701

Query: 199 CGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT 258
            GE+ V+I+     + L+ E++ +  I+   LF++V+ + K  M+FD +  ENS+ IVP 
Sbjct: 702 IGELNVTIKPNYATMTLNNEDIKSLKIYHTLLFSEVIPVIKKFMVFDKDNLENSFLIVPL 761

Query: 259 VSDSEQIVIDWKFMTLISEHHNDV-----IQDIPEKERENFVFDESKFRDAVVMPWYRNQ 313
             D E   I+W          +DV     ++ +P     +  +  S +   +V P YR  
Sbjct: 762 NVDWE---INW----------DDVRKYQHVEKVPSSTLSHVRY--SDYEVTLVNPSYRT- 805

Query: 314 FEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
             P+ + V ++  ++ P S+FP  T+ ++T+  YY  K+G++IQNL+QPLL+V   S ++
Sbjct: 806 -SPSVYIVTQVCDDLTPTSLFP--TDDFETYTHYYEEKHGIKIQNLKQPLLEVKAISTKI 862

Query: 374 NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
           N + PR + + G+     S+  R ++ E    ++ L+PELC +  FPA  W K+ +LPSI
Sbjct: 863 NCIKPRSM-KPGL-----SKRRRADVLEDF--EEHLIPELCRMICFPALYWLKASTLPSI 914

Query: 434 LYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDV 493
           L+R+  LL+A+++R  +  E  LG + L    EWP  +        KE     T+   D 
Sbjct: 915 LHRITHLLIAEDLRETIVRETNLGILALPSGSEWPALDMIE-----KEIVEQSTEPLLDT 969

Query: 494 IVDDT 498
           I+DDT
Sbjct: 970 ILDDT 974


>gi|302318908|ref|NP_001180543.1| dicer-2 [Bombyx mori]
 gi|300669733|dbj|BAJ11655.1| DICER-2 [Bombyx mori]
          Length = 1677

 Score =  282 bits (722), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 171/462 (37%), Positives = 261/462 (56%), Gaps = 50/462 (10%)

Query: 740  VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIF 799
            +K  P   G      +   T+  S+ +FD +            R ET+GDSFLK+A +++
Sbjct: 1177 LKKTPTGRGPELRDVLAALTTINSNDTFDLE------------RPETLGDSFLKFAASLY 1224

Query: 800  LYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP-- 857
            L+  +PN++EG+L++++ K +SN NL+  G +   G  M   +F PR ++L PG+F P  
Sbjct: 1225 LHHKFPNMNEGQLTNIKGKLISNRNLYYAGAKFNLGGRMKVEQFSPRSDFLVPGFFAPPK 1284

Query: 858  --KYLETALIEAGFPASLWNC---LSLPNLKELSPEKVLEIIKQKCVDLD---CTVDMNV 909
              +++E   I   F   +      +    L E S E V+   +    + +   C  +   
Sbjct: 1285 LEEFIEQRQIRPTFLIGIQFTEEEVMTGELSEESWESVMNNFQNGIAEAEPEGCAQN--- 1341

Query: 910  QSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPP------- 962
             S+  Y  V   ++ DKSIAD VEALIG YL+  G   A+  + W+  +V PP       
Sbjct: 1342 -SMQCY--VHSQAVADKSIADSVEALIGTYLLSGGILAAVKLLEWM--EVFPPQDNFADM 1396

Query: 963  ----VTNPESKHLS-----DVLLDGF-DKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                V  P SK+L+     D LL+      E+ +NY FKD ++LL A++H+SY  N LT 
Sbjct: 1397 LHKPVQTPLSKNLATEADIDFLLNNSRTDVEKILNYTFKDSTFLLNALSHSSYIRNRLTS 1456

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF- 1071
             Y+RLEFLGDAI+D+L+T H++E+ R   PG +TDLRSALVNN+ FA+  V+LG H +  
Sbjct: 1457 SYERLEFLGDAIIDFLVTSHIFENCRELKPGEMTDLRSALVNNVTFAAYTVKLGLHKYLC 1516

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM--EGECDEAEDIEVPKALGDLFESVAGA 1129
              L+P L + I +FV+ Q E +  +  +  L+  E +C  AE ++VPK L D+FE++ GA
Sbjct: 1517 SELNPSLEKAIMKFVEHQIERNHEIEFDVLLLISEVDCQVAEYVDVPKVLSDIFEALVGA 1576

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            +YLDSG +L+TVW V Y+IM  EI+  S  +PK P++ L E+
Sbjct: 1577 VYLDSGGNLETVWSVLYKIMHVEIDSFSKRIPKQPVKILYEM 1618



 Score =  167 bits (422), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 140/489 (28%), Positives = 239/489 (48%), Gaps = 41/489 (8%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI +++RYC+ LP D FT + P+  + E+ E+ +     ++ LPI SP+K  + G    
Sbjct: 586  SAISLLSRYCSILPHDQFTTITPV-WLQEVVENGAKK-QVTVILPIGSPVKEEIKGDPYS 643

Query: 63   TKLLAWRIAAMEACRVLYELKELDN-DLMPVTKEFINLYENTE-----PVVPKTPEIETY 116
                A R AA++AC  L+EL EL    L+P     ++ YE  +     P   K  E E  
Sbjct: 644  NTKTAKRSAALKACIKLHELGELHPLTLLPYKYAEVD-YERDDIRGCFPNWTKDCETEIK 702

Query: 117  PD----STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
             +     +K+R+  HK       +  P  ++  YL+ +KM+     P++  ++       
Sbjct: 703  ENVPKPGSKKRKRKHKIQFPSHLDAVPD-SSVFYLHVIKMEAAFEKPNDNREKALYDFIK 761

Query: 173  ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
             N   G   LT K +PK+C FP FT  GE+  SIE+    + L+         F  +LF 
Sbjct: 762  RNECYGF--LTQKPLPKLCEFPAFTSVGEITTSIEVNYAVIKLTPIIFELVKQFHYFLFD 819

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE-KER 291
            ++L + K  ++F+   ++N  ++VP V +     IDW  M     HH       P  +ER
Sbjct: 820  QILAINKKFLIFE--GTKNCMYVVP-VLEHNGYNIDWATM---QTHHTVPPVAAPSVEER 873

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
            ++ V  E  + + +V PWYR    P  + V +++  + P+S F +  + Y+++  YY+  
Sbjct: 874  KSLVVTEENYTNCIVTPWYRGTILPERYVVTKVLEYMTPKSQFDA--DCYESYANYYANN 931

Query: 352  YGLQIQNLE-QPLLDVDHTSCRLNFLTPRYVNRKG--------INLATTSEETRREIRES 402
            Y L I   E QPLL+V + S R+N L PR    K         I++A   ++ +      
Sbjct: 932  YNLDILGSESQPLLEVRNISTRMNCLLPRAATLKAFTDKQLKMISIAFGDDKPK------ 985

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILD 462
             G  ++ +PE C+ + +P  LW K+  LPSI++R++ LL+A E+   +++    G+ IL 
Sbjct: 986  -GFAEIFIPEFCIKYDYPGVLWYKATLLPSIIHRVHMLLVAHELLVEISNATKYGQPILK 1044

Query: 463  EKVEWPPFN 471
            +   + P  
Sbjct: 1045 KTESFQPIQ 1053


>gi|429137921|gb|AFZ74931.1| dicer 2 [Aphis glycines]
          Length = 1628

 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 183/511 (35%), Positives = 276/511 (54%), Gaps = 60/511 (11%)

Query: 712  NPSKNTAILTEILENI----NKLN-------TYGSVEKDVKTEPKSPGKSCEHGIIRNTS 760
            +PS N   + +IL+N+    N LN       T G + K+V T+   P +S    I++  +
Sbjct: 1084 SPSLNEMEMKDILKNVLTEMNTLNLTNNTSPTLGPLSKEVSTKNIGPRQS---DILKAIT 1140

Query: 761  TPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQV 820
             P      F  D+ N+     +R+ET GDSFLK+A+++ L+  +P+ +EG L+ L+ K V
Sbjct: 1141 PP------FANDMFNY-----ERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKIV 1189

Query: 821  SNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLP 880
             N NLF +G+    G  +    F+P  +W+PP + VP+ L+  + +    + + + +++P
Sbjct: 1190 GNRNLFYVGRNLNLGSYLTVNVFDPNMDWIPPCFGVPQTLKEIIEKGDLQSDVLHQINIP 1249

Query: 881  NLKELS--------PEKVLEIIKQKCVDLDCTVDMNVQSVVPYN-------LVTQHSIPD 925
               ++          E   EIIK K +      D + +  +P          + + S+ D
Sbjct: 1250 KDNQIIGILSDNTWKEIEKEIIKFKELSDITMSDSDGEEDIPRVGHSQSDLFIYKQSVSD 1309

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP----------PVTNPESKHLSDVL 975
            K +ADCVE+LIG Y+ + G      F    GL +IP          P+ N  +      +
Sbjct: 1310 KMVADCVESLIGTYVYKRGVEVG--FKVLQGLGIIPKQFIDAFKPKPIENIYNDLSFSKV 1367

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            L G++  E  I Y FK K  L QA+TH +Y     T+CYQRLEFLGDAILD+LIT ++ +
Sbjct: 1368 LPGYELLERRIGYSFKHKHLLAQALTHPTYQFG-YTECYQRLEFLGDAILDFLITTYIIQ 1426

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 +PG +TD+RS+LVNNI FASL+ R+G H F    S  + E I RF + Q +N+  
Sbjct: 1427 HCYQKTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHK 1486

Query: 1096 LNQE--YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
            + QE  Y + E +C  AE ++VPK LGDLFES+  AIYLD G  L+ VW   Y  +++EI
Sbjct: 1487 IGQEILYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCGRDLNFVWTFCYRFLENEI 1546

Query: 1154 ERLSVSVPKSPIRELLE--LEPENARFSKPE 1182
                 +VPK+PIR L E  L+P    FSKP+
Sbjct: 1547 NEFCTNVPKNPIRILHETKLQP---NFSKPD 1574



 Score =  177 bits (450), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 142/463 (30%), Positives = 225/463 (48%), Gaps = 42/463 (9%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D AI I+NRYC  LP D FT L+P   I++   +++      ++LPINS +K  + G   
Sbjct: 552 DVAISIINRYCFSLPQDRFTDLSPEWYIAQ---NNNKFKKYKLKLPINSVIKTPIDGIFC 608

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVP----KTPEIETY- 116
            +K  A + AA  AC  LY++  LD  L+P++ +  N   N     P    K  E   Y 
Sbjct: 609 ASKKNAKKSAAFNACIELYKVGALDEYLLPISIKN-NAVFNDLKWFPHWDEKDIEASNYK 667

Query: 117 --PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE---QNKRGRKIHP 171
             P + K R+  H    +      P V  P YL+ ++    C +PD    +  + +    
Sbjct: 668 LKPGTNKMRRMVHIESPTHLHGSYPQVTKPSYLHILR----C-VPDYIQLKEDKYKTFDK 722

Query: 172 PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
              S +   ILT+  +PKV +FPIF   G V VSI +  + + L   +      F + LF
Sbjct: 723 LLRSNEEFGILTSNKLPKVSNFPIFLPFGNVNVSIIVNVEIMHLDHTSHKKLEDFHNKLF 782

Query: 232 TKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
             VL +K +++    N  +NSY +VP  S   +  +DW  + +    +  V  + P  E+
Sbjct: 783 LDVLGVKDFIVRSYDN-GDNSYLVVPISSTDNKCNVDWNVINI----NKFVETEEPTMEQ 837

Query: 292 ENFVFDESKFR-DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
               F E   +   V+ PWYRN      + V ++  ++ P S FP  T+ Y T+E Y+S 
Sbjct: 838 RKTKFYEEYLKIPNVISPWYRNIVPIQRYIVTDVYLDMTPESSFP--TSEYDTYETYFSD 895

Query: 351 KYGLQIQNLEQPLLDVDHTSC-RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
           KY + + + +QP++ V      +LN+L PR++  K         + R E  E      +L
Sbjct: 896 KYSINVTHKDQPMIKVKSLGVTKLNYLIPRFIIGK--------PDRRNEYIE------IL 941

Query: 410 VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
           +PE C  H FP+  W K++ LP+ILYRL+ LLLA+++   + S
Sbjct: 942 IPEFCTWHKFPSVYWLKALMLPTILYRLDKLLLAEDLLIKINS 984


>gi|357607884|gb|EHJ65725.1| dicer-2 [Danaus plexippus]
          Length = 1871

 Score =  280 bits (715), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 171/432 (39%), Positives = 246/432 (56%), Gaps = 43/432 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R ET+GDSFLK+A +++L+  +P + EG+L++L+S+ + N NL+  G++      M   
Sbjct: 1400 ERSETLGDSFLKFAASLYLFHKFPQMDEGQLTNLKSRLIGNRNLYYAGERAGLAGRMKVE 1459

Query: 842  KFEPRDNWLPPGYFVPKYL----------ETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            +F PR ++L PG+  P  L           T LI   FP    + LS      LSPE   
Sbjct: 1460 QFSPRSDFLVPGFLAPSELVSFITRRKIRPTFLIGVQFPVE--DALS----GNLSPES-R 1512

Query: 892  EIIKQKCVDLDCTVD---MNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
             ++++K  D D   +      Q+ +    V   ++ DKS+ADCVEALIG YL+  G   A
Sbjct: 1513 SLLQEKLKDSDLAEEEPFGKAQNAMQ-RYVGAQAVSDKSVADCVEALIGTYLLSGGITDA 1571

Query: 949  LLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEES--------------INYRFK 991
            +  + W   K+IP      +  +K ++ V+ +G    +E               + Y+FK
Sbjct: 1572 VSILEWF--KIIPSEDKFLSFLTKKVNTVISEGKATVQEVDWLLNSCRSDIETILGYKFK 1629

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D S LL+A++HASY  N  T  Y+RLEFLGDAILD+LIT ++YE+    SPG LTDLRSA
Sbjct: 1630 DPSLLLEALSHASYIRNRYTRSYERLEFLGDAILDFLITAYIYENCGDLSPGDLTDLRSA 1689

Query: 1052 LVNNIIFASLAVRLGFHHFF-KHLSPGLHEVIQRFVKMQAENDFTLNQE--YYLMEGECD 1108
            LVNN+ FAS  VRLG H +F    +  L   I+ FV+ Q + D  L ++  Y + E +C+
Sbjct: 1690 LVNNVTFASYVVRLGLHKYFCSQFNGVLENAIKTFVEHQEQLDHVLLEDVLYLIEEEDCN 1749

Query: 1109 EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIREL 1168
             A+ I+VPKAL D+FES+ GA++LDSG  L  VWKV Y IM  EI   S+ VPK P+R L
Sbjct: 1750 IAQYIDVPKALSDIFESLTGAMFLDSGGDLKLVWKVIYRIMHKEIHDFSMKVPKQPVRVL 1809

Query: 1169 LELEPENARFSK 1180
            +E+      F K
Sbjct: 1810 MEMIHACPSFGK 1821



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 142/484 (29%), Positives = 239/484 (49%), Gaps = 34/484 (7%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI ++NRYC+ LP D +T + P++ I E  + +  M T  I +PI  P+K  V G  M 
Sbjct: 774  SAISLLNRYCSVLPHDQYTTILPMV-IQEPAQGNKTMVT--IIMPIACPIKEPVQGRPMS 830

Query: 63   TKLLAWRIAAMEACRVLYELKELDND-LMPVTKEFINL-YENTEPVVP----KTPEIETY 116
            +   A R AA+  C  L++  ELD + L+P  K  I+    +     P    +T   +  
Sbjct: 831  SVKNAKRSAALNVCIKLHKAGELDYETLLPKVKGLIDFSTTDVSSCFPNWRDETEVSDEG 890

Query: 117  PDSTKRRQFYHK-RMASCFTNCRPSVN-TPCYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
            P  TK+R   H      C    +     T CYL+ +K++     P +   R + ++    
Sbjct: 891  PPGTKKRVRKHPVHYPKCLDGPKTRDELTKCYLHVIKLETAFDEPSD--AREKALYDMLR 948

Query: 175  SPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKV 234
              +G   +T   +P++C+FP+F   GEV  ++++    ++L   +L     F  ++F +V
Sbjct: 949  RKEGYGFITFDRLPELCAFPMFLTVGEVRTTLQVNYAAIILDTSHLELIKQFHFFIFDQV 1008

Query: 235  LKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIP-EKEREN 293
            L++ K  ++ D     N+ + VP   D+    IDW  M     +      D P  +ER +
Sbjct: 1009 LEIAKKFLVHDGRV--NNLYAVPLKYDN-GYDIDWNVM---QTYKQIAPCDEPTAQERAS 1062

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
                +  + + VV PWYR    P  + V+ ++  + P S F    N+++TF +YYS KY 
Sbjct: 1063 LSVTKEMYDNCVVTPWYRGSLHPDRYIVSRVLEYLTPYSKF--EDNSFETFADYYSNKYN 1120

Query: 354  LQIQNL-EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK------K 406
            L+I    +QPLL+V + S R+N L PR    +G+     S++ RR    + G        
Sbjct: 1121 LEILGRKDQPLLEVRNISSRMNCLLPRAATIRGL-----SDKQRRLASLAHGDYKPREFT 1175

Query: 407  QLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVE 466
            +L VPE C+   +PA LW K++ LPSI++R+  LL+A+E+R  + ++    +  L + V 
Sbjct: 1176 ELFVPEYCVRADYPAHLWYKAIILPSIVHRVTMLLIAEELRVQILTDTQKSQGRLTKGVS 1235

Query: 467  WPPF 470
            W P 
Sbjct: 1236 WLPI 1239


>gi|242008637|ref|XP_002425109.1| dicer-1, putative [Pediculus humanus corporis]
 gi|212508774|gb|EEB12371.1| dicer-1, putative [Pediculus humanus corporis]
          Length = 471

 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 174/468 (37%), Positives = 261/468 (55%), Gaps = 34/468 (7%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + L+ +GDSFLK++ + FL+ TYP++HEG L++++ K V N NL   G  K     +   
Sbjct: 9    ENLKILGDSFLKFSCSFFLFKTYPSLHEGILTNVKGKLVGNKNLLDCGVAKNLPNFINTN 68

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN---LKELSPEKVLEIIKQKC 898
             F P  +W PP +  P+ L   ++      S+ + L +P    L  +  E+ +E   +K 
Sbjct: 69   DFSPNFDWNPPLFSTPEVLLNYIVSKNMDPSIISRLEIPQKECLTGILSEETIES-NRKL 127

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
            +D +    +    +V    +    + DK+I+D VEALIG YL+  G  G    ++W G  
Sbjct: 128  IDEEGVKKL---GLVKSPFLNTELMSDKTISDVVEALIGVYLLNGGLAGGFKILNWFG-- 182

Query: 959  VIP------------PV----TNPESKHLSDVLLDGF-DKFEESINYRFKDKSYLLQAMT 1001
            ++P            PV     N E   +  +L D F    EE++ Y FK K  LL+A+T
Sbjct: 183  ILPESNGTYEEIMKKPVRVNDVNDEESAVMTILGDVFYTDLEETLGYTFKRKELLLEAIT 242

Query: 1002 HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASL 1061
            H SY  N LT CYQRLEFLGDAILD+L+T ++ E+ +  +PG +TD+RSALVNN   A L
Sbjct: 243  HPSYVRNRLTPCYQRLEFLGDAILDFLVTVYIQENFKDMNPGLITDIRSALVNNSTLACL 302

Query: 1062 AVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVPKAL 1119
            +V+  FH +  + S  L++ I+ FVK+Q  N+  +N++  +   E D   AE + VPKAL
Sbjct: 303  SVKYDFHKYLLYTSSPLNKCIENFVKIQISNNHAVNEQALITLEENDAIMAESVTVPKAL 362

Query: 1120 GDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
            GD+FES+AGAI++DS  SL+TVW V+Y+IMK E++  +V+ PK+ +R L E+  E   F 
Sbjct: 363  GDIFESLAGAIFIDSENSLETVWNVFYKIMKKELDEFTVNPPKTAVRVLHEICGEKPFF- 421

Query: 1180 KPEKLADGRRVRVTVEVFGKGS---YKGIGRNYCIAKCTAAKCALKHL 1224
              E     + V V   ++ K       G G N   AK +A K ALK +
Sbjct: 422  --ETTVYEKVVSVKCSIYYKDEEIVAHGFGDNKKDAKKSACKMALKQI 467


>gi|339242189|ref|XP_003377020.1| putative ribosomal protein S7e [Trichinella spiralis]
 gi|316974223|gb|EFV57735.1| putative ribosomal protein S7e [Trichinella spiralis]
          Length = 2029

 Score =  279 bits (714), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 194/529 (36%), Positives = 263/529 (49%), Gaps = 107/529 (20%)

Query: 739  DVKTEPKS--PGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAI 796
            D  T P    PG  C   +   T   +   FD +             +E +GDSFLK+ +
Sbjct: 1526 DTATAPAQHRPGPQCRDVLRALTLRKAQDMFDLES------------MEALGDSFLKFIV 1573

Query: 797  TIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            ++ ++    N +EG+L+ LRS+ VSN NLF LGKQK+    + A  F+P   WLPP +  
Sbjct: 1574 SLHVFIKETNWNEGRLTSLRSEIVSNTNLFNLGKQKLLQAKLTAVPFDPTAQWLPPCF-- 1631

Query: 857  PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEII-----KQKCVDLDCTVDMNVQS 911
                  A +E+G+                  E V E+I     K+K   L       V  
Sbjct: 1632 ---RSLAALESGY------------------ESVNELIDEGDSKKKNEALKANTPTPVVV 1670

Query: 912  VVPYNLV----TQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN-- 965
               Y +     T   I DKSIADCVEAL+G YL+E G R A+  + W G+ +   + N  
Sbjct: 1671 AERYEMCSLNRTHQVIYDKSIADCVEALVGCYLLEAGMRPAIKLLKWFGIDIDGNLMNLL 1730

Query: 966  -----------------------PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTH 1002
                                   PE+K  S       + FE  I YRF +K+YL+QA+TH
Sbjct: 1731 SSSSSSSSSSSTAFCSENCVLIGPEAKIHSIWTAYDLNSFEAKIGYRFTNKAYLIQALTH 1790

Query: 1003 ASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            +SY      +TD Y+RLEFLGDAILDYLI+RHLY  +R  SPG L+DLR+ALVNN     
Sbjct: 1791 SSYNEVETPVTDSYERLEFLGDAILDYLISRHLYSSKRIRSPGLLSDLRAALVNN----- 1845

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFV-KMQA-ENDFTLNQEYYLMEGE--------CDEA 1110
                     +F + +  L  V +RFV  M+  +     + E Y+ME E         + A
Sbjct: 1846 ---------YFLYFNAELLSVNERFVLAMRGLKESVNFHNELYMMEEEQDDDEKETSEFA 1896

Query: 1111 EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV---------- 1160
            E +EVPK LGD+FESVAGAI+LDS  SL TVW+VYY ++  EI +               
Sbjct: 1897 EHVEVPKPLGDIFESVAGAIFLDSHCSLATVWQVYYNMIAEEIGKQRSDFTSFNKCLCHP 1956

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
            P SP+R LLELEPE  +F+  ++      V V V V GKGS+ G G++Y
Sbjct: 1957 PISPVRHLLELEPERVQFNILDREEGNSGVHVQVVVTGKGSFIGSGKSY 2005



 Score =  176 bits (446), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 137/488 (28%), Positives = 225/488 (46%), Gaps = 61/488 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
            + +A  ++ RYC +L  D F   +P  ++  I  +D SI +  +++LP  SPLK+ + G 
Sbjct: 942  LSSAHNVIKRYCNKLRKDRFADSSPKFSVQTILNKDLSISYVATVQLPTTSPLKKKIEGK 1001

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPD- 118
             M    LA   AA E  ++L+ + EL+  L+P             PV  +  EIE   D 
Sbjct: 1002 PMQNAKLAEMAAAFETAKMLHAMGELNEFLIP-------------PVTVRK-EIELKEDE 1047

Query: 119  ---STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
               S   R +Y K +        P  +   YLYA+                  I   E+ 
Sbjct: 1048 QFFSISSRSYYLKEVPDALYKAIPRADQKSYLYAIS-----------------ISSIESF 1090

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEE----NLSNTLIFMDYLF 231
               L IL +K I  +  F +FT    ++V IE +++    + +       +  IF +YLF
Sbjct: 1091 LPRLGILVSKPIGNLPGFSVFTDESYIDVEIEFVEETSYSAHQLDILTSFHCCIFKNYLF 1150

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPTVSD-SEQIVIDWKFMTLISEHHNDVIQDIPEKE 290
             +     +   +FDP  +  SY IVP   + + +  +D      I     DV   IP++ 
Sbjct: 1151 RE-----EEDFIFDPENAACSYLIVPLKCEYNSKCSVDLSTAEKIINWSKDV-SHIPQQR 1204

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNV-HPRSMFPSRTNTYQTFEEYYS 349
             E F+ + S + +AVV PWY+N+ +  ++Y    + N   P S FP +   Y++F EY+ 
Sbjct: 1205 SEKFIMNSSSYFNAVVYPWYKNKNDRDFYYFVTAVDNTCTPMSPFPLKM--YRSFAEYFE 1262

Query: 350  LKYGLQIQNLEQPLLDVDHTSC-RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
            +   +++ +  QPLL V   S  RLN L  + ++    +    +     +          
Sbjct: 1263 VTKQVKVLDKNQPLLSVKMVSFKRLNLLCEKPISILLFDFDDDANSCHCK---------- 1312

Query: 409  LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP 468
            LVPEL +IHP PAS+WR  + LP++LYR+N LL+A+++R  +  E      +L+E  E  
Sbjct: 1313 LVPELVIIHPMPASMWRCLIFLPTVLYRMNHLLIAEQLRLQILREAMFPGEVLEENCEIQ 1372

Query: 469  PFNFGWKM 476
            P N  W +
Sbjct: 1373 PLNKDWYL 1380


>gi|388565188|gb|AFK73581.1| dicer-2 [Nilaparvata lugens]
          Length = 1656

 Score =  278 bits (712), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 183/466 (39%), Positives = 265/466 (56%), Gaps = 25/466 (5%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDSFLKYA+++ L+  +P + EG+L+ ++ K + N NLF  G+QK  G  + A 
Sbjct: 1194 ERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNLFYCGEQKGLGSIIKAV 1253

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGF-PASLWNC-LSLPNLK--ELSPEKVLEIIKQK 897
            +F    +W+ PG+ V + ++    E    P  L+   LS   ++  +LSP +  +II++K
Sbjct: 1254 EFNTESDWIAPGFCVDRTVQNLFRELNINPRYLYEIPLSRDEIECGKLSP-RTKDIIEEK 1312

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
              +     D++  +    + ++Q    +K+++D VEAL+G Y+   G       + WL +
Sbjct: 1313 LEEW--EEDLDYCNYSNAHFISQQVTSNKTVSDSVEALLGLYIQSYGLEKGFDMLRWLKV 1370

Query: 958  ---KVIPPVTNPESKHLSDVLLDGF---------DKFEESINYRFKDKSYLLQAMTHASY 1005
               K+I P    + K    +L  G          D  E+ INY+FKD+++LLQA++H +Y
Sbjct: 1371 IDPKLITPDVYTKKKVEPTILFKGGQIDFHIHHPDYLEKLINYKFKDRTFLLQALSHPTY 1430

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N +T  YQRLEFLGDAILD+L+T H+YE     +PG LTDLRSALVNN+  AS+AVR+
Sbjct: 1431 QPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNLTPGELTDLRSALVNNVTLASIAVRI 1490

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAE--NDFTLNQEYYLMEGECDEAEDIEVPKALGDLF 1123
            G H F    S  L +VI+ FV+ Q    +DF+ +  + + E +C   E IEVPK LGD+F
Sbjct: 1491 GLHKFLLLRSCQLSKVIEAFVERQESRNHDFSDDTLFLIDEIDCIIGESIEVPKILGDVF 1550

Query: 1124 ESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEK 1183
            ES+ GAI+LDS   L T W   Y  M  EIE  S  VPK+ IR L E E  +  F K   
Sbjct: 1551 ESLVGAIFLDSNKCLKTTWDFIYRFMHKEIEMFSKKVPKNHIRLLYE-ENVSCYFRKSIL 1609

Query: 1184 LADGRRVRVTVEVFGKGSYK---GIGRNYCIAKCTAAKCALKHLKS 1226
            L D  RV V +E+      K   G G     AK  AAK AL+ L+S
Sbjct: 1610 LQDLNRVMVILEIVVADEVKKFYGFGETKKHAKRAAAKMALRFLRS 1655



 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 142/494 (28%), Positives = 246/494 (49%), Gaps = 45/494 (9%)

Query: 5    IFIVNRYCARLPSDIFTRLAP-----IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            I ++NRYC  L  D F+ L P     +   +   E++ +++   ++LPI+SP++  +   
Sbjct: 583  IALINRYCMSLDCDRFSTLTPFWWKEVSKKNGFNENNIVVY---LQLPISSPVRDVIKSD 639

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL-----------------YEN 102
              P   LA R AA++AC++LY+ +ELD+ ++P  K    L                  ++
Sbjct: 640  AFPNVELAKRSAALKACKLLYDSRELDDKMLPRGKTSQQLEDRGLFPCWRDEAPPTESDD 699

Query: 103  TEPVVPKTPEI--ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD 160
            +  +V   P +  +T   + K +  Y+K+   C   CRP      Y++ +KMK   P+  
Sbjct: 700  SAALVRVGPVVKRQTLVGTKKCKSIYNKKFPECMCECRPMPGEKVYMHIIKMK---PVYS 756

Query: 161  E-QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEEN 219
            E +  R +       S    AILTTK  P +  FP+F   GE++V + +      LS++ 
Sbjct: 757  EPKGNRKKAFFELLKSDSEFAILTTKKWPMLLKFPLFITMGEIKVEVIVNQACQTLSQKE 816

Query: 220  LSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHH 279
            +     F   +F+ VL+     M  D    E+SY + P   ++ + VI+W  +   ++  
Sbjct: 817  IDEIFNFHCIIFSDVLQCINMFMFRDYENKEHSYLLAPIKLENGRSVINWSVIR-DNQEF 875

Query: 280  NDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
             ++I    E+ +++ V  E  ++++VV+PWYR       + V ++  N    S FPS   
Sbjct: 876  PEIISPPVEERQKDIVVTEEIYKNSVVIPWYRGFLPRQAYIVTDLSKNETALSDFPS--G 933

Query: 340  TYQTFEEYYSLKYG--LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
             Y T+E+Y+  KY    ++ + ++PLL+V   S RLN L PR+      ++  TS+  ++
Sbjct: 934  DYPTYEKYFVTKYANVEKLYSAQKPLLEVRALSRRLNCLRPRH------SVQATSKRKKK 987

Query: 398  EIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            +  E       LVPELC+    PA+ W K+  LPS ++R+ ALLLADE+R  +A+++ L 
Sbjct: 988  QEEEFEES---LVPELCVRCAVPAAYWLKATLLPSCVHRITALLLADELRVTIATDLNLS 1044

Query: 458  KVILDEKVEWPPFN 471
             V L     W P +
Sbjct: 1045 TVTLPPGRSWRPIS 1058


>gi|146149942|gb|ABQ02405.1| dicer [Schistosoma mansoni]
          Length = 2641

 Score =  276 bits (706), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 167/383 (43%), Positives = 216/383 (56%), Gaps = 58/383 (15%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+ETIGDSFLK+ +T+ LY TYP  HEGKLSHLRS+ V N NL++LGK K     MI  
Sbjct: 1963 ERMETIGDSFLKFVVTVHLYLTYPEAHEGKLSHLRSRIVCNSNLYRLGKAKDLQNRMIGC 2022

Query: 842  KFEPRDNWLPPGYFV--PKYLETALI---EAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            KFEP +NW+PPGY+V   K L   +I   E+     +W+  +L + + L     ++  K 
Sbjct: 2023 KFEPHENWIPPGYYVRQDKRLNNEIIKKFESNRNLVIWSTDTLMDDEVLRNIDFIDENKI 2082

Query: 897  KCV--------DLDCTVDMNVQSVVPYNLVT-QHSIPDKSIADCVEALIGAYLIECGPRG 947
            K +        D +    ++ Q +    L+T Q +IPDKSIADCVEALIG YL   G R 
Sbjct: 2083 KPIENFPISEWDPNDPKVLHAQHLNNQYLITIQQAIPDKSIADCVEALIGCYLTTRGERS 2142

Query: 948  ALLFMSWLGLKVI-----------PPVTNPESKHLSD----------VLLDGFDKFEESI 986
            AL  M W G+  +            P + P+S +L             L+  FD+ E S+
Sbjct: 2143 ALRLMQWFGIDCLHKSDNSQPTARAPWSLPKSNYLDTDENRANLNEARLVWRFDELESSL 2202

Query: 987  NYRFKDKSYLLQAMTHASY------------------FLNTLTDCYQRLEFLGDAILDYL 1028
            NY FKD S L+QA TH SY                    +T  DCYQRLEFLGDA+LDY+
Sbjct: 2203 NYTFKDPSLLIQAFTHPSYHQLRVLSTSNNLSDQSNLMFSTDLDCYQRLEFLGDAVLDYV 2262

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            ITR LYED + HSPG LTDLRSALVNN IFA+LAVR+G H +F+  SP L   I  FV+ 
Sbjct: 2263 ITRFLYEDSKQHSPGVLTDLRSALVNNNIFAALAVRIGLHKYFRASSPQLLHTIDVFVRY 2322

Query: 1089 QAEN-----DFTLNQEYYLMEGE 1106
            Q +      DF  N+E  + + E
Sbjct: 2323 QKDVAKDDLDFITNEEIEIRQPE 2345



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 64/116 (55%), Positives = 88/116 (75%), Gaps = 1/116 (0%)

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            ++D+E+PKAL D+FES+AGAI+LDS  SLDTVW+++Y IMK  IER +  +PKSP+R+LL
Sbjct: 2506 SDDVEIPKALSDIFESLAGAIFLDSNFSLDTVWQIFYPIMKERIERYTACIPKSPVRQLL 2565

Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ELEPE  +F +  ++ DG R+ V   V GKG + G+GRNY +AK  AAK AL+ L+
Sbjct: 2566 ELEPEGTKFERARRMVDG-RISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALRVLR 2620



 Score =  126 bits (317), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 85/193 (44%), Positives = 106/193 (54%), Gaps = 25/193 (12%)

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
            F F   +F +AVV P YRN  +P Y+YVA I  ++ P S FPS  + ++ F  YY  KY 
Sbjct: 1388 FEFRMEEFVNAVVTPGYRNLDQPQYYYVAIIRNDMSPLSPFPS--DKFRNFAAYYINKYN 1445

Query: 354  LQIQNLEQPLLDVDHTSCRLNFLTPRYVN------------------RKGINLATTSEET 395
              I    QPLLDVD T  RLN L PRY+N                   K  N+ T  +  
Sbjct: 1446 ALITTNNQPLLDVDLTVLRLNLLIPRYMNIYGHNNTNANDNNGDINNSKSNNVYTHKQYY 1505

Query: 396  RREIR-----ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            +++       E L  KQLLVPELC  H FPAS+WRK+V +PSILYRL  LLLA+E+R  +
Sbjct: 1506 QQQNHDDHQGEDLTNKQLLVPELCFRHSFPASVWRKAVCIPSILYRLEHLLLAEELRHRI 1565

Query: 451  ASEIGLGKVILDE 463
            A E  LG   L E
Sbjct: 1566 ACETNLGCAYLPE 1578



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 100/363 (27%), Positives = 158/363 (43%), Gaps = 90/363 (24%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-----------------------IITISEIKEDDS 37
            +  AI I+N+YCARLPSD  T L P                         ++ +++ D +
Sbjct: 936  LSKAINIINQYCARLPSDYITNLTPKWYWKIFPQPQGFTPSSTGPGSTCGSLKDLQPDGT 995

Query: 38   I-MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEF 96
              ++ C +RLPINS +K ++ G  M  K LA   AA  A  +LY   E+D+    + +E 
Sbjct: 996  FNLYQCVLRLPINSSVKETIVGEPMVCKKLAKYSAAFNAIHLLYLSGEMDSKWELINRET 1055

Query: 97   -------------INLYENTEPVVPKT-------PEIETYPD------------------ 118
                         + L     P+  K+         I++  D                  
Sbjct: 1056 NPMHHLTSENYGNLKLSSQHSPMKYKSFSSLNGSANIDSESDYGDYASSIGCCESADDEG 1115

Query: 119  --------STKRRQFYHKRMASCFTNCRPSVNTPC--YLYAVKMKLTCPIPDEQNKRGRK 168
                    + KRRQ+Y+++  +  +NC P  N P   YLY + M L  P  ++Q  RGR 
Sbjct: 1116 EMKSNIQNTVKRRQYYYRKFPTQMSNCLPQPNEPSSNYLYYIDMHLVKPFAEQQYLRGRV 1175

Query: 169  IHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS-IELID--------------KNV 213
             H PEN P G  +LTTK +  +  FPIF+R GE ++  IEL                +  
Sbjct: 1176 CHHPENEPIGFGLLTTKPLHHIPIFPIFSRSGEEKIRFIELWSPKSNYQFNDQYLPIQGP 1235

Query: 214  VLSEENLSNTLIFMDYLFTKVLKLKKYLML-FDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
            +L++E +   + F   LF +VL+ +K  +L F+ + +     +VP   D+    IDW F+
Sbjct: 1236 ILTQEQIDRLIKFHRILFQEVLRFEKDSVLEFNFHKAYLQVLVVPARRDT--CSIDWDFI 1293

Query: 273  TLI 275
             L+
Sbjct: 1294 NLV 1296


>gi|358253873|dbj|GAA53880.1| endoribonuclease Dicer [Clonorchis sinensis]
          Length = 2384

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 163/370 (44%), Positives = 210/370 (56%), Gaps = 60/370 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+ETIGDSFLK+  T+ LY TYPN HEGKLSH+RS+ V N NL++LG+ K   + MIA 
Sbjct: 1758 ERMETIGDSFLKFVATVHLYLTYPNAHEGKLSHMRSRVVCNSNLYRLGRAKHLQDRMIAC 1817

Query: 842  KFEPRDNWLPPGYFV---PKY--------LETALIEAGFPASL--WNCLSLPNLKELSPE 888
            KF P +NW+PPGY V   P+         L++   ++    +L  W+  +L + + L   
Sbjct: 1818 KFGPYENWVPPGYVVRHDPRLVTKADHNSLQSPTRQSNKEVNLNIWSTDTLMDDEVLLGM 1877

Query: 889  KV----LEIIKQKCV---DLDCTVDMNVQSVVPYNLVT-QHSIPDKSIADCVEALIGAYL 940
            KV    ++ I    V   D +    +  Q  V + LVT Q +IPDKSIADCVEALIG YL
Sbjct: 1878 KVYTEEIKPIDNFAVSQWDPNSPEVVKTQKSVDHCLVTIQQAIPDKSIADCVEALIGCYL 1937

Query: 941  IECGPRGALLFMSWLGLKVIP--------------------PVTNPESKHLSDVLLD-GF 979
               G R AL  M W G+  +P                    P+ +P    L +  L   F
Sbjct: 1938 TARGERSALRLMRWFGIDCLPGPDVRLRPRGAPWAIPPPLIPLNDPRRAQLEEARLSWRF 1997

Query: 980  DKFEESINYRFKDKSYLLQAMTHASY---------------FLNTL---TDCYQRLEFLG 1021
            D+ E  +NY+F+D + L+QA TH SY               F +T    TDCYQRLEFLG
Sbjct: 1998 DELEAKLNYKFRDPTLLIQAFTHPSYHQLRKTLPVNPDDDPFSSTFLTDTDCYQRLEFLG 2057

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            DA+LDY+ITR LYED + HSPG LTDLRSALVNN IFA+L+VR G H F +  SP L   
Sbjct: 2058 DAVLDYVITRFLYEDSQQHSPGVLTDLRSALVNNNIFAALSVRAGLHQFLRASSPQLLHT 2117

Query: 1082 IQRFVKMQAE 1091
            I  FV+ Q E
Sbjct: 2118 IDVFVRYQKE 2127



 Score =  263 bits (672), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 194/594 (32%), Positives = 286/594 (48%), Gaps = 137/594 (23%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSI---------------------- 38
            +  AI ++N+YCARLPSD  T L P   +  + +  +                       
Sbjct: 849  LSKAINVINQYCARLPSDYITNLTPRWRLKSLPQPQTWKPPVQGPGASCGARGEVEAVRK 908

Query: 39   --MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEF 96
              +F C +RLPIN+ +K  + G  M  K LA   AA+ A R L+   ELD+   P +KE 
Sbjct: 909  RGLFQCLLRLPINTSVKMEIAGEPMACKKLAKLSAALNAVRALHAAGELDSRWEPSSKES 968

Query: 97   I------------NLYENTEP------VVPKTPEIE---------TYPD--------STK 121
                         N+ + T P      +     E+E         T PD        + +
Sbjct: 969  SVSGSNRDNSASWNIAKLTAPFSSMSSLANSEAEVEINDLLATCNTEPDEPSAALEVAGR 1028

Query: 122  RRQFYHKRMASCFTNCRPSVN--TPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            RRQ+Y ++ A    NC P     +P YLY + M+L   +P+  N RGR    PE+ P G 
Sbjct: 1029 RRQYYFRKFADQMRNCLPKAGDPSPNYLYFIDMRLASALPEYHNVRGRPCFRPEDEPLGF 1088

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSI-EL---IDKNVV-------------LSEENLSN 222
             +LTTK +  + SFPIF+R GE  V + EL   ++ +V              L+EE L  
Sbjct: 1089 GLLTTKPLHHIPSFPIFSRSGEETVRLLELWSPLESSVTSDAQALSPRLGQPLTEEQLEQ 1148

Query: 223  TLIFMDYLFTKVLKLKKYLML-FDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHN- 280
            +  F   +F  VL+L++  ++ FD   +     +VP   D+    IDW F++L+   +N 
Sbjct: 1149 SFKFHRIVFQAVLRLERDAVIEFDVARAYTQVIVVPIRIDT--FNIDWDFISLVLSSYNP 1206

Query: 281  -DVIQDIPEKERE--------------------------------------------NFV 295
              V + +P ++                                              N +
Sbjct: 1207 EGVCRILPRRDLSKTAISTSPVSQTGKSTSPRGGMSRPSGRTRSSLRARQLGNTSTVNLL 1266

Query: 296  FDESK---FRD-----AVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY 347
            F++     FRD     AVVMP YRN  +P ++YVAEI  ++ P S     +++Y  F  Y
Sbjct: 1267 FNQPGVFDFRDEDYVNAVVMPGYRNLDQPQHYYVAEIRHDLSPLSP--FPSSSYPNFAAY 1324

Query: 348  YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
            Y+ KY   I ++EQPLLDVD T  RLN L PRY+N +G  L  + E  +R+ R++L  KQ
Sbjct: 1325 YTNKYEATISSMEQPLLDVDFTVLRLNLLVPRYMNIRGHCLPCSKEGRKRDRRDNLTYKQ 1384

Query: 408  LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVIL 461
            +L+PELC IHPFPAS+WRK+V LPS+LYR+++LLLA+E+R  +A E GLG+  L
Sbjct: 1385 ILIPELCFIHPFPASVWRKAVCLPSVLYRMHSLLLAEELRRRIAYETGLGRARL 1438



 Score =  148 bits (374), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            ++D+E+PKALGD+FES+AGA++LDS +SLDTVW V+Y +MK  IER +  +PKSP+R+LL
Sbjct: 2250 SDDVEIPKALGDIFESLAGALFLDSDLSLDTVWTVFYPLMKERIERYTACIPKSPVRQLL 2309

Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ELEPE  +F +P + ADG R+ V   V GKG + GIGRNY +AK  AAK AL+ L+
Sbjct: 2310 ELEPEGTKFERPRRTADG-RISVCAHVLGKGRFYGIGRNYRLAKSLAAKRALRVLR 2364


>gi|307169911|gb|EFN62420.1| Endoribonuclease Dcr-1 [Camponotus floridanus]
          Length = 506

 Score =  271 bits (694), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 169/450 (37%), Positives = 248/450 (55%), Gaps = 32/450 (7%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS+LK+  ++FLY  +P  +EG+L+ L+ K + N NL+  G +K     +   
Sbjct: 46   ERLETLGDSYLKFITSLFLYHKFPAFNEGQLTALKGKIIGNRNLYYCGNKKNIPGRIKND 105

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS---PEKVLEIIKQKC 898
             F P  N++ P Y V + L+  L++     ++   L +P  ++ +    E     ++Q  
Sbjct: 106  AFIPTSNFIAPAYTVLRPLQKILLDESVAPNVLYELRIPEEEKFTGYISEDTKMTMQQIV 165

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
            ++ D     + ++   + L  Q  + DK+IAD VEALIG YL   G +GA   + W G  
Sbjct: 166  MNWD---KEDTKTGYEHYLGVQ-ILSDKTIADSVEALIGVYLKSNGIKGAAKLLKWFG-- 219

Query: 959  VIP--------------PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHAS 1004
            ++P              P+ NP +    +  +   +  E  I Y+F ++++LLQA TH S
Sbjct: 220  ILPNIQIDELLYSNPPDPLINPGN---PNSYMPWANDMETKIGYKFNNRAFLLQAFTHPS 276

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
            Y  N +T+CYQRLEFLGDAILD+LIT ++YE     SPG LTDLRSALVNNI FA LAVR
Sbjct: 277  YTPNVITECYQRLEFLGDAILDFLITCYIYETCGNLSPGHLTDLRSALVNNITFACLAVR 336

Query: 1065 LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ---EYYLMEGECDEAEDIEVPKALGD 1121
             G        +P LHE I RFVK Q E ++ +N       L E EC+ AE ++VPK LGD
Sbjct: 337  YGLDTALLSYAPKLHEAIDRFVKFQQERNYVVNDELLWVLLEEEECNLAEYVDVPKVLGD 396

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP 1181
            LFES+ GAIYLDSG +L  VW++ Y     EI++ S + PK P+R + E      +F   
Sbjct: 397  LFESLIGAIYLDSGKNLTKVWEIVYSFTHKEIDKFSKNTPKHPVRLIYENTDSRPKFLDA 456

Query: 1182 EKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
              +     + V +++   G    + G G N
Sbjct: 457  VLIEGTDTIMVPLKITFAGKEKLFHGFGAN 486


>gi|328905041|gb|AEB54796.1| dicer 2 [Litopenaeus vannamei]
          Length = 1502

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 169/470 (35%), Positives = 248/470 (52%), Gaps = 32/470 (6%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+     L+    + HEG+LS  R K V N  LF+L  QK     + A 
Sbjct: 1030 ERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKLVCNKTLFRLACQKGLEGKIAAK 1089

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN-LKELS--PEKVLEIIKQKC 898
               P+ N   PG+ +    E +L     P   W+   +PN +K++    E V  ++    
Sbjct: 1090 VLNPKKNGSIPGFRIKPEFEESLRSLEVPHDFWH--QVPNTVKDVGDLKEAVFALMSD-- 1145

Query: 899  VDLDCTVDMNVQSVVP-YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
               D + D   +     YN  T+H + DKSIADCVEA+IGAYL+ CG   A  F+ WLG+
Sbjct: 1146 ---DASKDEKAEKKGSCYNPWTEHEVSDKSIADCVEAIIGAYLLVCGNEAAAAFLHWLGV 1202

Query: 958  KV-------IPPVTNPESKHLSDVLLD--------GFDKFEESINYRFKDKSYLLQAMTH 1002
             V       + P T   ++   +   D          D+ E+ I Y F+D+S+++QA+TH
Sbjct: 1203 GVFRDNSLLMEPKTVRTARVRKECAQDLTIFYKKAVLDRLEKKIGYTFRDRSFIVQAVTH 1262

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            +SY  N +TDCYQRLEFLGDA+LDYL+T H++     +SPG L+DLRS  V N      A
Sbjct: 1263 SSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYSPGQLSDLRSYFVKNDTLGRAA 1322

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
             +   H    HL+P L   I +F+ +  ++      E    E +  + ED+E+PKALGD+
Sbjct: 1323 AKGKLHQHLLHLNPKLEASIDKFLSILHQDPLG---EELNTEDDVQDCEDVEIPKALGDM 1379

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP--ENARFSK 1180
             E++ GA+YLDS  SL   W+V   I+   +     ++  +PIR+LLE  P  +   F K
Sbjct: 1380 VEAIIGAVYLDSNRSLKVAWQVIERILGDLLNTSIQTIQLNPIRQLLEEVPGEKQVEFVK 1439

Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230
             E     +   V V+V G G++   G+NY +AK   A  ALK + + + A
Sbjct: 1440 GEDDGSEKSTYV-VKVKGFGTFTASGKNYRVAKKKVAAIALKEIHNQQAA 1488



 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 143/472 (30%), Positives = 223/472 (47%), Gaps = 71/472 (15%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           ++AI +VN YC +LPSD FT   P + + E+KE    M T  IRLPI +PLK  + G   
Sbjct: 546 NSAIQLVNLYCGKLPSDKFTDNLPEV-VEEVKEG---MTTVGIRLPIMAPLKDMIYGSGW 601

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPK--TPEIETYPDS 119
             K LA + AA++ C  L+E+ ELD++L P      +L E    + P+   PE  +   +
Sbjct: 602 ANKDLAKKSAALQLCIKLHEMGELDSNLRPKESNDDSLVEGLVDLPPEEPVPEGTSESGT 661

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            KRR+ + K +   F+N      + C LY++ +K                 P   S + +
Sbjct: 662 RKRRRVHAKDLCYPFSN--EHGGSYC-LYSIDIK-----------------PFGQSGESV 701

Query: 180 AILTTKYIPKV---CS-------FPIF-TRCGEVEVSIELIDKNVVLSEENLSNTLIFMD 228
            I ++  I K+   C        FP+F ++ G+V V++  +     L          F  
Sbjct: 702 TIDSSTCISKIGFICKEGLVSSPFPLFFSKWGDVMVNVREVGPLTDLDTSLFDKIKKFHR 761

Query: 229 YLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
            +F  +++L + LM FDP  S+   FIVP +  SE  +ID   +  I  +  D I+ +  
Sbjct: 762 LVFENLIELNENLMSFDPEKSKWDVFIVP-LDFSE--IIDLNMLNEI--YSFDSIKPVML 816

Query: 289 KER-ENFVFDESKFRDAVVMPWY---RNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTF 344
           K   +N  F  SKF DA++ P Y    NQ     +YV+ I   ++P + FP     Y+++
Sbjct: 817 KSHNQNTKFVRSKFEDALIYPQYGIPSNQM----YYVSHIFDELNPCNTFPEGKKGYESY 872

Query: 345 EEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGI--NLATTSEETRREIRES 402
           E Y+  +YGL+I++  QPLL+  H    LN+L       K    NL              
Sbjct: 873 ERYFLERYGLEIKDKNQPLLEAKHIPKELNYLKKIPKKAKEKKGNLVPR----------- 921

Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE--IRTAVAS 452
                  VPE C + P  ASLW + + +PSI +RLN+  L  E  ++T + S
Sbjct: 922 ------FVPEFCGLIPIKASLWWQIMCMPSIFHRLNSFNLMHEFIVKTKITS 967


>gi|328696730|ref|XP_003240109.1| PREDICTED: endoribonuclease dcr-1-like isoform 2 [Acyrthosiphon
            pisum]
          Length = 1648

 Score =  271 bits (693), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 187/533 (35%), Positives = 285/533 (53%), Gaps = 63/533 (11%)

Query: 719  ILTEILENINKLN-------TYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQP 771
            IL  +L  +N LN          S+  +V  +   P +S    I++  + P      F  
Sbjct: 1115 ILKNVLTEMNTLNLTNNSPPKLSSLSIEVSKQNIGPKQS---DILKVITPP------FAN 1165

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D+ N+     +R+ET GDSFLK+A+++ L+  +P+ +EG L+ L+ K V N NL  +G+ 
Sbjct: 1166 DMFNY-----ERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRN 1220

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE----LSP 887
               G  ++   F+P  +W+PP + VP  L+  + E  F + + + +++P   +    LS 
Sbjct: 1221 LNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQSDVLHQITIPRDNQTTGILSD 1280

Query: 888  EKVLEI----IKQKCVDLDCTVDMNVQSVVPYN-------LVTQHSIPDKSIADCVEALI 936
            E  +EI    +K K +      D + +  +P          + + S+ DK +ADCVE+LI
Sbjct: 1281 ETWIEIETELLKFKRLSDMPISDSDEEDGIPQIGHSQSDLFLHKQSVSDKMVADCVESLI 1340

Query: 937  GAYLIECGPRGALLFMSWLGLKVIPP--VTNPESKHLSDV--------LLDGFDKFEESI 986
            G Y+ + G      F    GL +IP   +   + K + D+        +L G++  E  I
Sbjct: 1341 GTYVYKRGVEVG--FKVLQGLGIIPKQFIDTFKPKPIDDLYDGLDFSKILPGYELLERRI 1398

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             Y FK K  L QA+TH +Y     ++CYQRLEFLGDAILD+LIT ++ E     +PG +T
Sbjct: 1399 GYSFKHKHLLAQALTHPTYQFG-FSECYQRLEFLGDAILDFLITTYIIEHCYHKTPGEIT 1457

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE--YYLME 1104
            D+RS+LVNNI FASL+ R+G H F    S  + E I RF + Q +N+  + QE  Y + E
Sbjct: 1458 DIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYLIEE 1517

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSP 1164
             +C  AE ++VPK LGDLFES+  AIYLD    L+ VW + Y  ++ EI+    +VPK+P
Sbjct: 1518 SDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNVPKNP 1577

Query: 1165 IRELLE--LEPENARFSKP---EKLAD---GRRVRVTVEVFGK-GSYKGIGRN 1208
            IR L E  L+P    FSKP   +K AD   G  +R+ + +  K     G G+N
Sbjct: 1578 IRILHETKLQP---NFSKPDASDKAADKGLGTMMRLEIMLNNKIMRIYGFGQN 1627



 Score =  156 bits (395), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 221/461 (47%), Gaps = 42/461 (9%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           AI I+NRYC  LP D FT L+P   +++   + ++     ++LPINS +K  + G     
Sbjct: 556 AISIINRYCYSLPQDRFTDLSPEWYMAQ---NHNMSKKYKLKLPINSVIKTPIDGLFCTN 612

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENT-------EPVVPKTPEIETY 116
           K  A + AA  AC  LY++  LD +LMP+  +   ++ +        E  V  T + +  
Sbjct: 613 KKNAKKSAAFNACIALYKIGALDENLMPINIKNTAIFNDLKWFPHWDEGDVEAT-KYKLK 671

Query: 117 PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE---QNKRGRKIHPPE 173
             + K ++  H    +      P VN   YL+     L C +PD    +  +        
Sbjct: 672 AGTNKMKRMVHIESPTYLHGSYPQVNQSSYLHV----LHC-VPDYIKLEESKYETFDKLL 726

Query: 174 NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
            S +   ILT+  +P+V +FPIF   G V VSIE+  + + L  ++      F + LF  
Sbjct: 727 RSNEEFGILTSNKLPQVSNFPIFLPFGNVNVSIEVNVEILYLDHKSHKELENFHNKLFVD 786

Query: 234 VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
           VL +K ++     N  +NSY +VP +S      +DW  + +       V  + P  E+  
Sbjct: 787 VLGVKDFIARSYDN-GDNSYLVVPILSTDNIYNVDWNVINV----SKFVETEEPTMEQRK 841

Query: 294 FVFDESKFRDA-VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
             F E   +   V+ PWYRN      + V ++  ++ P S FP  T+ Y T+  Y+S KY
Sbjct: 842 SKFYEEYLKTPNVISPWYRNIVPVQRYIVTDVYWDMTPESSFP--TSEYDTYATYFSDKY 899

Query: 353 GLQIQNLEQPLLDVDHTSC-RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            +Q+ +  QP++ V      ++N+L PR        ++T   + R E  E      +LVP
Sbjct: 900 SIQVAHKNQPMIKVKSLGVSKINYLVPR--------ISTGKIDKRSEYIE------ILVP 945

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
           E C  H FP+  W K++ LP++LYRL+ LLLA+++   + S
Sbjct: 946 EFCTWHKFPSVYWLKALMLPTLLYRLDKLLLAEDLLVKINS 986


>gi|328696734|ref|XP_003240110.1| PREDICTED: endoribonuclease dcr-1-like isoform 3 [Acyrthosiphon
            pisum]
          Length = 1630

 Score =  271 bits (692), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 189/548 (34%), Positives = 292/548 (53%), Gaps = 63/548 (11%)

Query: 704  RQSFDNASNPSKNTAILTEILENINKLN-------TYGSVEKDVKTEPKSPGKSCEHGII 756
            ++S  ++ N  +   IL  +L  +N LN          S+  +V  +   P +S    I+
Sbjct: 1082 QKSKSSSLNEVEMNDILKNVLTEMNTLNLTNNSPPKLSSLSIEVSKQNIGPKQS---DIL 1138

Query: 757  RNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLR 816
            +  + P      F  D+ N+     +R+ET GDSFLK+A+++ L+  +P+ +EG L+ L+
Sbjct: 1139 KVITPP------FANDMFNY-----ERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELK 1187

Query: 817  SKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNC 876
             K V N NL  +G+    G  ++   F+P  +W+PP + VP  L+  + E  F + + + 
Sbjct: 1188 MKLVGNRNLLYVGRNLNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQSDVLHQ 1247

Query: 877  LSLPNLKE----LSPEKVLEI----IKQKCVDLDCTVDMNVQSVVPYN-------LVTQH 921
            +++P   +    LS E  +EI    +K K +      D + +  +P          + + 
Sbjct: 1248 ITIPRDNQTTGILSDETWIEIETELLKFKRLSDMPISDSDEEDGIPQIGHSQSDLFLHKQ 1307

Query: 922  SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPP--VTNPESKHLSDV----- 974
            S+ DK +ADCVE+LIG Y+ + G      F    GL +IP   +   + K + D+     
Sbjct: 1308 SVSDKMVADCVESLIGTYVYKRGVEVG--FKVLQGLGIIPKQFIDTFKPKPIDDLYDGLD 1365

Query: 975  ---LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
               +L G++  E  I Y FK K  L QA+TH +Y     ++CYQRLEFLGDAILD+LIT 
Sbjct: 1366 FSKILPGYELLERRIGYSFKHKHLLAQALTHPTYQFG-FSECYQRLEFLGDAILDFLITT 1424

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
            ++ E     +PG +TD+RS+LVNNI FASL+ R+G H F    S  + E I RF + Q +
Sbjct: 1425 YIIEHCYHKTPGEITDIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQK 1484

Query: 1092 NDFTLNQE--YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
            N+  + QE  Y + E +C  AE ++VPK LGDLFES+  AIYLD    L+ VW + Y  +
Sbjct: 1485 NNHKIGQEVLYLIEESDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFL 1544

Query: 1150 KSEIERLSVSVPKSPIRELLE--LEPENARFSKP---EKLAD---GRRVRVTVEVFGK-G 1200
            + EI+    +VPK+PIR L E  L+P    FSKP   +K AD   G  +R+ + +  K  
Sbjct: 1545 EKEIKEFCDNVPKNPIRILHETKLQP---NFSKPDASDKAADKGLGTMMRLEIMLNNKIM 1601

Query: 1201 SYKGIGRN 1208
               G G+N
Sbjct: 1602 RIYGFGQN 1609



 Score =  156 bits (394), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 221/461 (47%), Gaps = 42/461 (9%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           AI I+NRYC  LP D FT L+P   +++   + ++     ++LPINS +K  + G     
Sbjct: 556 AISIINRYCYSLPQDRFTDLSPEWYMAQ---NHNMSKKYKLKLPINSVIKTPIDGLFCTN 612

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENT-------EPVVPKTPEIETY 116
           K  A + AA  AC  LY++  LD +LMP+  +   ++ +        E  V  T + +  
Sbjct: 613 KKNAKKSAAFNACIALYKIGALDENLMPINIKNTAIFNDLKWFPHWDEGDVEAT-KYKLK 671

Query: 117 PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE---QNKRGRKIHPPE 173
             + K ++  H    +      P VN   YL+     L C +PD    +  +        
Sbjct: 672 AGTNKMKRMVHIESPTYLHGSYPQVNQSSYLHV----LHC-VPDYIKLEESKYETFDKLL 726

Query: 174 NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
            S +   ILT+  +P+V +FPIF   G V VSIE+  + + L  ++      F + LF  
Sbjct: 727 RSNEEFGILTSNKLPQVSNFPIFLPFGNVNVSIEVNVEILYLDHKSHKELENFHNKLFVD 786

Query: 234 VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
           VL +K ++     N  +NSY +VP +S      +DW  + +       V  + P  E+  
Sbjct: 787 VLGVKDFIARSYDN-GDNSYLVVPILSTDNIYNVDWNVINV----SKFVETEEPTMEQRK 841

Query: 294 FVFDESKFRDA-VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
             F E   +   V+ PWYRN      + V ++  ++ P S FP  T+ Y T+  Y+S KY
Sbjct: 842 SKFYEEYLKTPNVISPWYRNIVPVQRYIVTDVYWDMTPESSFP--TSEYDTYATYFSDKY 899

Query: 353 GLQIQNLEQPLLDVDHTSC-RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            +Q+ +  QP++ V      ++N+L PR        ++T   + R E  E      +LVP
Sbjct: 900 SIQVAHKNQPMIKVKSLGVSKINYLVPR--------ISTGKIDKRSEYIE------ILVP 945

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
           E C  H FP+  W K++ LP++LYRL+ LLLA+++   + S
Sbjct: 946 EFCTWHKFPSVYWLKALMLPTLLYRLDKLLLAEDLLVKINS 986


>gi|328696732|ref|XP_001945890.2| PREDICTED: endoribonuclease dcr-1-like isoform 1 [Acyrthosiphon
            pisum]
          Length = 1691

 Score =  271 bits (692), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 187/533 (35%), Positives = 285/533 (53%), Gaps = 63/533 (11%)

Query: 719  ILTEILENINKLN-------TYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQP 771
            IL  +L  +N LN          S+  +V  +   P +S    I++  + P      F  
Sbjct: 1158 ILKNVLTEMNTLNLTNNSPPKLSSLSIEVSKQNIGPKQS---DILKVITPP------FAN 1208

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D+ N+     +R+ET GDSFLK+A+++ L+  +P+ +EG L+ L+ K V N NL  +G+ 
Sbjct: 1209 DMFNY-----ERMETYGDSFLKFAVSLVLFDAFPSDNEGVLTELKMKLVGNRNLLYVGRN 1263

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE----LSP 887
               G  ++   F+P  +W+PP + VP  L+  + E  F + + + +++P   +    LS 
Sbjct: 1264 LNLGSYLVVNVFDPNMDWIPPCFGVPIKLKEIIEEGNFQSDVLHQITIPRDNQTTGILSD 1323

Query: 888  EKVLEI----IKQKCVDLDCTVDMNVQSVVPYN-------LVTQHSIPDKSIADCVEALI 936
            E  +EI    +K K +      D + +  +P          + + S+ DK +ADCVE+LI
Sbjct: 1324 ETWIEIETELLKFKRLSDMPISDSDEEDGIPQIGHSQSDLFLHKQSVSDKMVADCVESLI 1383

Query: 937  GAYLIECGPRGALLFMSWLGLKVIPP--VTNPESKHLSDV--------LLDGFDKFEESI 986
            G Y+ + G      F    GL +IP   +   + K + D+        +L G++  E  I
Sbjct: 1384 GTYVYKRGVEVG--FKVLQGLGIIPKQFIDTFKPKPIDDLYDGLDFSKILPGYELLERRI 1441

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             Y FK K  L QA+TH +Y     ++CYQRLEFLGDAILD+LIT ++ E     +PG +T
Sbjct: 1442 GYSFKHKHLLAQALTHPTYQFG-FSECYQRLEFLGDAILDFLITTYIIEHCYHKTPGEIT 1500

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE--YYLME 1104
            D+RS+LVNNI FASL+ R+G H F    S  + E I RF + Q +N+  + QE  Y + E
Sbjct: 1501 DIRSSLVNNITFASLSARIGLHRFILAKSVQMTEAIDRFYEHQQKNNHKIGQEVLYLIEE 1560

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSP 1164
             +C  AE ++VPK LGDLFES+  AIYLD    L+ VW + Y  ++ EI+    +VPK+P
Sbjct: 1561 SDCYAAESVDVPKVLGDLFESLIAAIYLDCNRDLNFVWAICYRFLEKEIKEFCDNVPKNP 1620

Query: 1165 IRELLE--LEPENARFSKP---EKLAD---GRRVRVTVEVFGK-GSYKGIGRN 1208
            IR L E  L+P    FSKP   +K AD   G  +R+ + +  K     G G+N
Sbjct: 1621 IRILHETKLQP---NFSKPDASDKAADKGLGTMMRLEIMLNNKIMRIYGFGQN 1670



 Score =  155 bits (393), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 136/461 (29%), Positives = 221/461 (47%), Gaps = 42/461 (9%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           AI I+NRYC  LP D FT L+P   +++   + ++     ++LPINS +K  + G     
Sbjct: 556 AISIINRYCYSLPQDRFTDLSPEWYMAQ---NHNMSKKYKLKLPINSVIKTPIDGLFCTN 612

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENT-------EPVVPKTPEIETY 116
           K  A + AA  AC  LY++  LD +LMP+  +   ++ +        E  V  T + +  
Sbjct: 613 KKNAKKSAAFNACIALYKIGALDENLMPINIKNTAIFNDLKWFPHWDEGDVEAT-KYKLK 671

Query: 117 PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE---QNKRGRKIHPPE 173
             + K ++  H    +      P VN   YL+     L C +PD    +  +        
Sbjct: 672 AGTNKMKRMVHIESPTYLHGSYPQVNQSSYLHV----LHC-VPDYIKLEESKYETFDKLL 726

Query: 174 NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK 233
            S +   ILT+  +P+V +FPIF   G V VSIE+  + + L  ++      F + LF  
Sbjct: 727 RSNEEFGILTSNKLPQVSNFPIFLPFGNVNVSIEVNVEILYLDHKSHKELENFHNKLFVD 786

Query: 234 VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
           VL +K ++     N  +NSY +VP +S      +DW  + +       V  + P  E+  
Sbjct: 787 VLGVKDFIARSYDN-GDNSYLVVPILSTDNIYNVDWNVINV----SKFVETEEPTMEQRK 841

Query: 294 FVFDESKFRDA-VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
             F E   +   V+ PWYRN      + V ++  ++ P S FP  T+ Y T+  Y+S KY
Sbjct: 842 SKFYEEYLKTPNVISPWYRNIVPVQRYIVTDVYWDMTPESSFP--TSEYDTYATYFSDKY 899

Query: 353 GLQIQNLEQPLLDVDHTSC-RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
            +Q+ +  QP++ V      ++N+L PR        ++T   + R E  E      +LVP
Sbjct: 900 SIQVAHKNQPMIKVKSLGVSKINYLVPR--------ISTGKIDKRSEYIE------ILVP 945

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
           E C  H FP+  W K++ LP++LYRL+ LLLA+++   + S
Sbjct: 946 EFCTWHKFPSVYWLKALMLPTLLYRLDKLLLAEDLLVKINS 986


>gi|378405592|gb|AFB82635.1| dicer-2 [Marsupenaeus japonicus]
          Length = 1502

 Score =  270 bits (690), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 168/470 (35%), Positives = 249/470 (52%), Gaps = 32/470 (6%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK+     L+    + HEG+LS  R K+V N  LF+L  QK     + A 
Sbjct: 1030 ERLELLGDSFLKFVTGEALFLRDESYHEGRLSQSRGKRVCNKTLFRLACQKGLEGKIAAK 1089

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN-LKELS--PEKVLEIIKQKC 898
               P+ N   PG+ +    E +L     P   W+   +PN +K++    E V  ++    
Sbjct: 1090 VLNPKKNGSIPGFRIKPEFEESLRSLEVPHDFWH--QVPNTVKDVGDLKEAVFALMSD-- 1145

Query: 899  VDLDCTVDMNVQSVVP-YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
               D + D   +     YN  T+H + DKSIADCVEA+IGAYL  CG   A  F+ WLG+
Sbjct: 1146 ---DASKDEKAEKKGSCYNPWTEHEVSDKSIADCVEAIIGAYLRVCGNEAAAAFLHWLGV 1202

Query: 958  KV-------IPPVTNPESKHLSDVLLD--------GFDKFEESINYRFKDKSYLLQAMTH 1002
             V       + P T   ++   +   D          D+ E+ I Y F+D+S+++QA+TH
Sbjct: 1203 GVFRDNSLLMEPKTVRTARVRKECAQDLTIFYKKAVLDRLEKKIGYTFRDRSFIVQAVTH 1262

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            +SY  N +TDCYQRLEFLGDA+LDYL+T H++     +SPG L+DLRS  V N      A
Sbjct: 1263 SSYVNNQVTDCYQRLEFLGDAVLDYLVTCHIFCRFTDYSPGQLSDLRSYFVKNDTLGRAA 1322

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
             +   H    H++P L   I +F+ +  ++      E    E +  + ED+E+PKALGD+
Sbjct: 1323 AKGKLHQHLLHINPKLEASIDKFLSILHQDPLG---EELNTEDDVQDCEDVEIPKALGDM 1379

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP--ENARFSK 1180
             E++ GA+YLDS  SL   W+V   I++  +     ++  +PIR+LLE  P  +   F K
Sbjct: 1380 VEAIIGAVYLDSNRSLKVAWQVIERILEDLLNTSIQTIQLNPIRQLLEEVPGEKQVEFVK 1439

Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230
             E     +   V V+V G G++   G+NY +AK   A  ALK + + + A
Sbjct: 1440 GEDDGSEKSTYV-VKVKGFGTFTASGKNYRVAKKKVAAIALKEIHNQQAA 1488



 Score =  160 bits (406), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 142/472 (30%), Positives = 224/472 (47%), Gaps = 71/472 (15%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           ++AI +VN YC + PSD FT   P + + E+KE    M T  IRLPI +PLK  + G   
Sbjct: 546 NSAIQLVNLYCGKFPSDKFTDNLPEV-VEEVKEG---MTTVGIRLPIMAPLKDMIYGSGW 601

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPK--TPEIETYPDS 119
             K LA + AA++ C  L+E+ ELD++L P      +L E    + P+   PE  +   +
Sbjct: 602 ANKDLAKKSAALQLCIKLHEMGELDSNLRPKESNDDSLVEGLVDLPPEEPVPEGTSESGT 661

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGL 179
            KRR+ + K +   F+N      + C LY++ +K                 P   S + +
Sbjct: 662 RKRRRVHAKDLCYPFSN--EHGGSYC-LYSIDIK-----------------PFGQSGESV 701

Query: 180 AILTTKYIPK---VCS-------FPI-FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMD 228
            I ++  I K   +C        FP+ F++ G+V V++  +     L          F  
Sbjct: 702 TIDSSTCISKIGFICKEGLVSSPFPLFFSKWGDVMVNVREVGPLTDLDTSLFDKIKKFHR 761

Query: 229 YLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
            +F  +++L + LM FDP  S+   FIVP +  SE  +ID   +  I  +  D I+ +  
Sbjct: 762 LVFENIIELNENLMSFDPEKSKWDVFIVP-LDFSE--IIDLNMLNEI--YSFDSIKPVMI 816

Query: 289 KER-ENFVFDESKFRDAVVMPWY---RNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTF 344
           K   +N  F  SKF DA++ P Y    NQ     +YV+ I   ++P + FP     Y+++
Sbjct: 817 KSHNQNTKFVRSKFEDALIYPQYGIPSNQM----YYVSHIFDELNPCNTFPEGLKGYESY 872

Query: 345 EEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL--TPRYVNRKGINLATTSEETRREIRES 402
           E Y+  +YGL++++  QPLL+  H    LN+L   P+    K  NL              
Sbjct: 873 ERYFLERYGLELKDKNQPLLEAKHIPKELNYLKKIPKKAREKKGNLVPR----------- 921

Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE--IRTAVAS 452
                  VPE C + P  ASLW + + +PSI +RLN+  L  E  ++T + S
Sbjct: 922 ------FVPEFCGLIPIKASLWWQIMCMPSIFHRLNSFNLMHEFIVKTKITS 967


>gi|444841767|gb|AGE12616.1| Dicer 2 [Laodelphax striatella]
          Length = 1654

 Score =  269 bits (688), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 189/535 (35%), Positives = 284/535 (53%), Gaps = 42/535 (7%)

Query: 688  IDVENTIKENQPVHIVRQSFDN--ASNPSKNTAILTEILENINKLNTYGSVEKD-VKTEP 744
            ID+E  I++ + V IV   F N   S P     I+TE L+ + + N    +EK     + 
Sbjct: 1102 IDIERDIEQVKLVDIV---FFNEFVSKP-----IVTEKLKELAENNKQDKIEKSPFIHKS 1153

Query: 745  KSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP------KRLETIGDSFLKYAITI 798
            ++P  S     I NT  P+D   +    L+  T  S       +RLET+GDSFLKY++++
Sbjct: 1154 ETPFLS-----IFNTK-PNDLGVELADVLQVLTAASAHDIFNLERLETLGDSFLKYSVSL 1207

Query: 799  FLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858
             L+  +P + EG+L+ ++ K + N NLF  G++K  G  +   +F    +W+ PG+ V +
Sbjct: 1208 ILFTRFPELSEGQLTMIKGKIIGNRNLFYCGEEKELGSIIKTVEFNTESDWVAPGFCVDR 1267

Query: 859  YLETALIEAGFPASLWNCLSLPNLKELS---PEKVLEIIKQKCVDLDCTVDMNVQSVVPY 915
             ++  L E          + L   +  S    E   ++I+ K  D     D +  +    
Sbjct: 1268 TVQRLLRELSVNPRYLYEIELTKEERDSGQLSESTRDMIENKLYD-SWEEDTDYANYSNA 1326

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL---KVIPPVTNPESKHLS 972
            + ++Q  + +K+++D VEAL+G  +   G       + WL +    +I P    E K   
Sbjct: 1327 HFISQQVVSNKTVSDSVEALLGLCIKSFGIEKGFEILRWLKVTDPNLIKPDAYVEKKVEP 1386

Query: 973  DVL---------LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDA 1023
             +L         +   D  E  INY+FK +++LLQA++H +Y  N +T  YQRLEFLGDA
Sbjct: 1387 TILSMIGDINFHIHQPDYLERLINYKFKQRAFLLQALSHPTYQPNNITPTYQRLEFLGDA 1446

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            ILD+LIT H++E     +PG LTDLRSALVNN+  AS+AVR+G H F    S  L +VI+
Sbjct: 1447 ILDFLITTHIFEHCDNLTPGELTDLRSALVNNVTLASIAVRIGLHKFLLLRSFQLSKVIE 1506

Query: 1084 RFVKMQ--AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
             FV+ Q   +++FT    Y + E + +  E IEVPK LGD+FES+ GAI+LDS   L T 
Sbjct: 1507 SFVERQESRQHEFTDQTLYLINEIDSNVGECIEVPKILGDVFESLVGAIFLDSNRCLKTT 1566

Query: 1142 WKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
            W+  Y  M  EIE  S  VPK+ +R L E E    RF K  +L +  RV V +E+
Sbjct: 1567 WEFIYRFMHKEIEMFSKKVPKNHVRLLYE-ENVQCRFRKSVRLQEVDRVMVVLEI 1620



 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 152/488 (31%), Positives = 251/488 (51%), Gaps = 41/488 (8%)

Query: 5    IFIVNRYCARLPSDIFTRLAPII----TISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            I ++NRYC  L  D F+ L+P       +++  E   I++   ++LP +SP+++ +    
Sbjct: 586  ISLINRYCTSLDCDKFSTLSPFWWKERVVTDCHEQKIIVY---LQLPNSSPVRQIIKSDA 642

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK-----EFINLY---ENTEPVVPKTPE 112
             P+  LA R AA++AC++LYE +ELDN+++P  K     +  NLY    + EP V +   
Sbjct: 643  FPSIELAKRSAALKACKLLYESQELDNNMLPCGKRSQQLQNKNLYPCWRDDEPPVDEADG 702

Query: 113  IETY------PDSTKR-RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE-QNK 164
              T       P  TK+ +  Y K+  +C   CRP      Y++ +KMK   P+ +E +  
Sbjct: 703  DATSQFKKLSPVGTKKCKSIYPKKFPACIYECRPEPGKKVYMHIIKMK---PVYEEPKGP 759

Query: 165  RGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTL 224
            R +  +   NS  G A L+TK  P +  FP+F   GE+++ +++ ++  +L+++ +    
Sbjct: 760  RKKAFYDILNSDFGYAFLSTKQWPTLLKFPLFLTIGEIQIEVKMNEECQLLTQKEIDEIF 819

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQ 284
             F   +F+ VL+     M  D    E+SY + P   D+ + VI+W  +    E     I+
Sbjct: 820  NFQCVIFSDVLQCINTFMSRDYENEEHSYLLAPIKLDAGRPVINWGVIRNNQEFPE--IK 877

Query: 285  DIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTF 344
                +EREN V  E  ++ +VV+PWYR       + V ++       S FPS    Y T+
Sbjct: 878  PTTAEERENIVVTEEMYKHSVVIPWYRGFLPRQAYIVTDLSKTETALSDFPS--GEYPTY 935

Query: 345  EEYYSLKYG--LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E Y+  KY    Q+ +  +PLL+V   S +LN L PR + +     AT+  + ++E    
Sbjct: 936  ENYFVTKYANVEQLYSAHKPLLEVRALSKKLNCLRPRQIVQ-----ATSKRKKKQEEEFE 990

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILD 462
                  LVPELC+    PA+ W KS  LPS ++R+  LLLADE+R  +A+++ LG V+L 
Sbjct: 991  ES----LVPELCIRSNVPAAYWLKSTLLPSCVHRITYLLLADELRVKIATDLNLGTVLLP 1046

Query: 463  EKVEWPPF 470
            +   W P 
Sbjct: 1047 QGKSWRPM 1054


>gi|357605595|gb|EHJ64690.1| dicer-1 [Danaus plexippus]
          Length = 823

 Score =  268 bits (686), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 155/418 (37%), Positives = 236/418 (56%), Gaps = 62/418 (14%)

Query: 189 KVCSFPIFTRCGEVEVSIELI-DKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPN 247
           ++ +FPI+TR GEV V +      +V L++  ++    FM+++F+ VL++++  M    +
Sbjct: 2   QIPAFPIYTRSGEVRVRVCCAPHADVRLTDTRVTRITRFMEFVFSDVLRVRRRGMKL-AD 60

Query: 248 CSENSYFIVPTVSDSEQ-----IVIDWKFMTLISEHHND--------------------- 281
            + N+Y++VPTV  +       I IDW F+ LI +H  +                     
Sbjct: 61  TTHNNYYVVPTVKKTTSDGATWIDIDWPFLDLIYQHTEEKRCLEIEKPMLWEEEKKKEEK 120

Query: 282 ---VIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
               I++   K  E FVFD  K+++AVV PWYRNQ +P +F VAEI  N+ P S FPS  
Sbjct: 121 KGKKIENPLLKPGEVFVFDAEKYKEAVVTPWYRNQDQPQFFLVAEICWNLTPESSFPSAQ 180

Query: 339 NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
             + +F  YY  KYG ++    QPLLDVDHTS RLN LTPRYVNRKG+ L  +SE TRR 
Sbjct: 181 --HASFRSYYKSKYGAELTQSNQPLLDVDHTSARLNLLTPRYVNRKGVALPVSSERTRRA 238

Query: 399 IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK 458
            R+ L +KQ+LV ELC+ HPF A LW  +V+LP  LYR+NALLLADE+R AV+ ++G+G+
Sbjct: 239 KRDRLDQKQILVAELCMRHPFAAPLWCAAVALPCALYRINALLLADEVRRAVSRDVGVGQ 298

Query: 459 VILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIA 518
              D  + WPP +FGW +               +V+  D++  D K+++  +++ C+   
Sbjct: 299 PRDD--ISWPPLDFGWSLA--------------EVLSADSDKGDKKKENE-ISDCCSRDG 341

Query: 519 KVEIVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGV 576
           + E +            +E E+  ++ +   ++   E +  E   EIGTWSN+MA+ +
Sbjct: 342 EKESI------------KETEERPEVKEKTINDILQEKEDAENGFEIGTWSNDMASSI 387



 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 45/81 (55%), Positives = 51/81 (62%), Gaps = 18/81 (22%)

Query: 764 DFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYP 805
           +F FD QPDLE H GPSP                  +RLETIGDSFLK+AIT +LYC  P
Sbjct: 723 EFDFDSQPDLEGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKFAITAYLYCALP 782

Query: 806 NVHEGKLSHLRSKQVSNYNLF 826
            VHEGKLSH+RSKQV    +F
Sbjct: 783 AVHEGKLSHMRSKQVLESKIF 803


>gi|241061224|ref|XP_002408099.1| dicer-1, putative [Ixodes scapularis]
 gi|215492368|gb|EEC02009.1| dicer-1, putative [Ixodes scapularis]
          Length = 1348

 Score =  266 bits (681), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 158/373 (42%), Positives = 209/373 (56%), Gaps = 67/373 (17%)

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV----------------- 959
            + T   +PDKS+AD VEALIGAYL+ CGP GAL  M W+G+++                 
Sbjct: 975  VCTSAQVPDKSVADSVEALIGAYLLVCGPVGALKVMKWMGVRLTQCDLEGGAEGSGVRGF 1034

Query: 960  --IPP--------VTNPES--KHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL 1007
               PP        V +PE     L +++ D     E ++ Y F D+S+LLQA+THASY+ 
Sbjct: 1035 WGFPPPQTALLRHVPHPEEDLAALMELMADTVADVERALGYTFVDRSFLLQAVTHASYYR 1094

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
            N LTDCYQRLEFLGDA++DYL+TR+LYE  R  +PG LTDLRS+LVNN  FASL V+ G 
Sbjct: 1095 NRLTDCYQRLEFLGDAVIDYLVTRYLYELPRKFNPGQLTDLRSSLVNNTFFASLVVKYGL 1154

Query: 1068 HHFFKHLSPGLHEVIQRFVKMQAE-------------NDFTLNQEYYLMEGECDEAED-- 1112
            H  FKH +P L   I RFV  QA+              D    QE+  +    D AED  
Sbjct: 1155 HGCFKHCNPSLFSAIGRFVNYQAQAREEEREEGELPDEDREERQEFPDLNAPLDGAEDDT 1214

Query: 1113 --------------------IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
                                +EVPKALGDLFES+ GA++LD GMSLD VW++ Y +   E
Sbjct: 1215 YWKVLERHYCHEEECQEPEEVEVPKALGDLFESLMGAVFLDCGMSLDRVWRIIYRMFGQE 1274

Query: 1153 IERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            IE  S +VP  P++EL E    +ARF  P +L    +V+V + V GK ++  + +N  +A
Sbjct: 1275 IESFSQNVPVPPVKELTE-RFRDARFG-PAELLGNNKVKVQLTVTGK-TFSCVAKNKKLA 1331

Query: 1213 KCTAAKCALKHLK 1225
            K   AK  L+ +K
Sbjct: 1332 KMALAKKCLRMVK 1344



 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 118/359 (32%), Positives = 178/359 (49%), Gaps = 26/359 (7%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           M +AI +VNRYC +LPSDIFTRL P  TI  +  +D   + C++ LP+ SPLK  + G  
Sbjct: 614 MTSAIGLVNRYCVKLPSDIFTRLQPDYTILPVNREDKEYYVCTVYLPMTSPLKEPIQGQP 673

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK----EFINLYENTEPVVPKTPEIETY 116
           M TK  A   AA+E C+ L+++ ELD++L+PV +          E  +P VPK       
Sbjct: 674 METKRYAKMAAALETCKRLHQMGELDDNLLPVKRTLALLEEPEEEAEQPGVPK------- 726

Query: 117 PDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP 176
           P + KRR+ Y KR+   F     +  +   L+ +  +L     D QN R  ++  PE+SP
Sbjct: 727 PGTKKRRRVYSKRVCRLFREAPLAGPSTFRLHVLTTRLERLASDLQNWRKERLVDPEDSP 786

Query: 177 QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
               +L  + +P + SFPIFTR GE  V++     +V L++E       F  ++  +V++
Sbjct: 787 LWFGMLLREDMPLIPSFPIFTRSGEELVTVSRAG-SVHLTKEQCERLRHFHRFVCDEVMR 845

Query: 237 LK-KYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFV 295
           ++ + L+ FDP  + N   + P +       IDW F+  +  H             E F 
Sbjct: 846 VRERPLLAFDPGSAPNCVTLAPVMQGDGTAAIDWPFVNAVLNHEKSAAG-------ERFQ 898

Query: 296 FDESKFRDAVVMPWYR--NQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
           F    + DAVV+P Y   N    TY YV  +  ++ P S   S T    +F EY S  Y
Sbjct: 899 FQRHSYEDAVVVPQYHPLNYRHKTY-YVKRVRDDLSPES---SWTTGTASFAEYLSGAY 953


>gi|349603393|gb|AEP99241.1| Endoribonuclease Dicer-like protein, partial [Equus caballus]
          Length = 223

 Score =  265 bits (678), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 136/219 (62%), Positives = 171/219 (78%), Gaps = 3/219 (1%)

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+  +H +FK
Sbjct: 1    CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 60

Query: 1073 HLSPGLHEVIQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +SP L  VI  FV+ Q E +    ++ E    E + ++ EDIEVPKA+GD+FES+AGAI
Sbjct: 61   AVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 120

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            Y+DSGMSL+ VW+VYY +M+  IE+ S +VP+SP+RELLE+EPE A+FS  E+  DG +V
Sbjct: 121  YMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KV 179

Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            RVTVEV GKG +KG+GR+Y IAK  AA+ AL+ LK+ +P
Sbjct: 180  RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 218


>gi|312384317|gb|EFR29067.1| hypothetical protein AND_02261 [Anopheles darlingi]
          Length = 1651

 Score =  259 bits (662), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 164/451 (36%), Positives = 246/451 (54%), Gaps = 38/451 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK++++ FL   +   HEG L+  + + VSN NL     Q          
Sbjct: 1193 ERFELLGDAFLKFSVSAFLLMRHVTWHEGYLTTCKGRMVSNRNLLYCAMQYGLPGMQKVH 1252

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAG-FPASLWNCLSLPNLKELSPEKVLE-IIKQKCV 899
            +F+PR+ WLPP   VPK +  A+I+A   PA L+         ELS E+V   I++Q  +
Sbjct: 1253 RFDPRNEWLPPLATVPKVIREAMIKAKEMPALLFKL-------ELSEEEVQSGIVQQSKI 1305

Query: 900  D--LDCTVDMNVQSVVPYNLVTQH-SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
            D  L    +   +S      V QH  + DK++AD +EAL+G  +   G   +   +S  G
Sbjct: 1306 DAFLPMIKESEEESRSTLMAVLQHVQVSDKTVADSMEALLGVCVKAVGYERSFRALSHFG 1365

Query: 957  LKVIPPVTN---------------PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMT 1001
              ++P  T+                + +   D LL   +K E ++ Y+F+++++LLQA T
Sbjct: 1366 --IMPRDTDLAKLLRTHEYTVLNYQDERETIDRLLINPEKIERTVGYKFRNRTFLLQAFT 1423

Query: 1002 HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASL 1061
            HA+Y  NTLT  Y++LEFLGDA+LD+LIT +++E     SPG LTDLRSALVNN+  A +
Sbjct: 1424 HATYTTNTLTKSYEQLEFLGDAVLDFLITLYIFERNPHMSPGQLTDLRSALVNNVTLACV 1483

Query: 1062 AVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM--EGECDEAEDIEVPKAL 1119
             VR   HH+    SP L + I +FV++Q +    +     L+  E E   AE ++VPK L
Sbjct: 1484 LVRFRLHHYILSQSPMLTDKIDKFVEVQGQKRNRIGDWVRLLTEESETPLAEYVDVPKVL 1543

Query: 1120 GDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
            GD+FE++ GAIYLDSG  L T W++ Y +++ EIE  S+  P   +R+L E +     FS
Sbjct: 1544 GDVFEALIGAIYLDSGCDLVTTWRICYSLLQREIENFSLDTPIQVVRQLYEHQDARPHFS 1603

Query: 1180 KP--EKLADGRRVRVT-----VEVFGKGSYK 1203
             P  E +    R+  T     ++VFG G  K
Sbjct: 1604 APRVEDVVVIVRLHFTLRNQRLKVFGCGQNK 1634



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 128/475 (26%), Positives = 225/475 (47%), Gaps = 40/475 (8%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++NRYC  +P D+FT     +    I++   I  T  ++LP+ S ++  V G  
Sbjct: 532 LTSSVQLLNRYCMSMPRDLFT--GTNVAWERIEQHGKICVT--VKLPLQSTIREVVHGEP 587

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINLYENTEPVVPKTPEIETYPDS 119
           M    LA + AA   C+ LYE+ EL   L+PVT K+ +   E+      +   +ET P  
Sbjct: 588 MKNLKLAKQSAAFNVCKQLYEVGELSMHLLPVTVKDKVQQVEDLYFSHWRAVGVETKPKQ 647

Query: 120 TKRR---QFYHKRMASCFTNCRPSVNT-PCYLYAVKMKLTCPIPDEQNKRGRKIHPPEN- 174
             +    + Y     +   +C P  +T  CY+Y ++ K       ++  +G  I    + 
Sbjct: 648 AGQANNVRCYRVHYPAESQHCTPRTDTDECYVYILRTKALF----DRGTQGDNIAIFSDL 703

Query: 175 --SPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLIFMD 228
             S     I+T K +P +    +F   G++ V +      + L      E L+    F  
Sbjct: 704 YSSSNNFGIMTRKPLPSLAPMQLFCSLGKIGVEVVREPLRITLDPGAGGEQLAKLKRFHL 763

Query: 229 YLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
            LF  +L+L K  +  D   +EN + IVP ++DS+   IDWK +           ++   
Sbjct: 764 LLFRDLLRLWKQFIALDVEAAENGFLIVP-MADSK--TIDWKLVDTFPYLQQS--EEPTT 818

Query: 289 KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
             R+  +F+   +R+ V+ PWY++     Y  V ++   + P S FP+    Y++FE Y+
Sbjct: 819 LARQRMIFNAEGYRNRVIHPWYKSDPMQNYV-VVKVHEELSPLSPFPN--GAYKSFEHYF 875

Query: 349 SLKYG-LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
           S ++  + ++  +Q L++V   S  LN L P      G      +   RR+ +E      
Sbjct: 876 SAQHQQVIVRPDDQFLIEVKGISTNLNLLHPGTEQDGG-----NARSRRRDFQE------ 924

Query: 408 LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILD 462
           LL+PEL     FPA  W K+  LPS+L+R++ LL++++IR  +A+ + +G V  D
Sbjct: 925 LLIPELVHNFEFPADYWLKATLLPSVLHRVHYLLISEQIRLDLANSVQIGTVRCD 979


>gi|167046036|gb|ABZ10549.1| dicer 1 [Nematostella vectensis]
          Length = 412

 Score =  258 bits (660), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 166/404 (41%), Positives = 221/404 (54%), Gaps = 62/404 (15%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD+FLK A++IFLYC Y +  EGKL+  ++ Q+SN  L+++  +    E +  T
Sbjct: 36   ERLEMLGDAFLKQAVSIFLYCCYKDGDEGKLTKRKTSQLSNRALYRVACRLGLPEYLQNT 95

Query: 842  KFEPRDNWLPPGYFVPKYLETALIE-AGFP------ASLWNCLSLPNLKELSPEKVLEII 894
            + + R +W  P       L+ A +E  G P      AS   C S     E  PE  +  +
Sbjct: 96   QLD-RVSWTTPS------LQAAEVEPVGSPGKSQKTASNKRCQSASRQPENRPE--MSTL 146

Query: 895  KQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
            ++     D  +                SIPDKS+AD VEALIGAYL  CG +GAL F+ W
Sbjct: 147  EKPETARDKAL--------------HQSIPDKSVADSVEALIGAYLTTCGYQGALHFLDW 192

Query: 955  LGLKVIP--PVT-----------------------NPESKHLSDVLLDGFDKFEESINYR 989
            LG+KV+P  P++                       NP+      V L GF   E  I Y 
Sbjct: 193  LGVKVLPESPMSTDGPRASSKYSIFTRPTITEYNSNPQVLKRFAVQLQGF---ENRIGYE 249

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            F +K YL+QA+THASY  N LTDCYQRLEFLGDA+LD+L+T  +Y       PG LTDLR
Sbjct: 250  FSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLDPGELTDLR 309

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF---VKMQAENDFTLNQEYYLMEGE 1106
             ALVNN IFA +AV+ GF+     +SP     I  F   VK +      ++++ +L    
Sbjct: 310  QALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQISKDPFLTLSN 369

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
             DE E IE PK LGD+FESVAGAI+LDSGM L   W+VYY ++K
Sbjct: 370  DDE-EGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLK 412


>gi|425626934|gb|AFX89025.1| DCR2 [Mayetiola destructor]
          Length = 1646

 Score =  244 bits (623), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 159/423 (37%), Positives = 231/423 (54%), Gaps = 31/423 (7%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL-FKLGKQKVFGESMI-AT 841
             E +GD+FLK+ +++ L   + + HEG LS ++ K V N NL +   K K+ G  MI   
Sbjct: 1184 FEVLGDAFLKFGVSLSLMHNHQDWHEGFLSAMKGKIVGNRNLCYNAIKMKLPG--MINKN 1241

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F+P+D+W PP + V   ++  + +     +L   LSL  + E+   KV E   Q    L
Sbjct: 1242 NFDPKDDWQPPMFKVDDVIKNKMRQKNISPNLLFELSLSKM-EIESGKVSE---QNVEML 1297

Query: 902  DCTVDM---NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL- 957
            + T +    N Q     N++    I DK+ +DCVEA++GA L+  G       +    + 
Sbjct: 1298 EQTFNRYVNNDQEGSMQNVLGLQRIADKTSSDCVEAILGACLVSIGVDRTFKVLEMFNIL 1357

Query: 958  ---------KVIP-PVTNPESK-HLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTH 1002
                     K++     NP  + ++ D+ +D F     + E +I Y+FKD++YLLQA+TH
Sbjct: 1358 PKRENVDITKLLSNQFHNPRVRTNIKDIEIDSFLPNHTELETNIGYKFKDRAYLLQALTH 1417

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
             +Y  N +T CYQ+LEFLGDA+LD+LIT ++YE      PG LTDLRSALVNN+  A + 
Sbjct: 1418 PTYPTNRVTGCYQQLEFLGDAVLDFLITSYIYERCPEMDPGKLTDLRSALVNNVTLACIC 1477

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLMEG---ECDEAEDIEVPKA 1118
            VR   H +    +  L E I +FV  Q A N    +    LME    EC  AE +EVPK 
Sbjct: 1478 VRYNIHLYILSQNAALTEFISQFVDYQIAHNHEVTDHVDLLMEEKDVECKMAEYVEVPKT 1537

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
            LGD+ E++ GAI+LDSG +L+  WKV Y +M+ EI +   +VP S +R L E E  N  F
Sbjct: 1538 LGDVIEALIGAIFLDSGNNLEVTWKVIYGLMQKEINKFMANVPLSIVRRLYEHENANPEF 1597

Query: 1179 SKP 1181
              P
Sbjct: 1598 DAP 1600



 Score =  138 bits (348), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 132/465 (28%), Positives = 211/465 (45%), Gaps = 41/465 (8%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITI--SEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +A+ ++NRYC  LP D FT   P+IT   +E+K          I LPI SP+   + G+ 
Sbjct: 584  SAVSLLNRYCDVLPRDQFT--DPVITWRRTEVKGGK---IQVHILLPIQSPISAEICGNA 638

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK-EFINLYENTEPVVPKTPEIETYPDS 119
            MP   LA R AA +AC  LYE K L+ + MPV+  + + L ++    V  +PE      +
Sbjct: 639  MPNLKLAKRSAAFKACIKLYEQKALNENAMPVSSIKCMELQKDVYFDVWSSPEFAKDQKA 698

Query: 120  T----KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
            T    K  +    +         P  N   +LY + ++      D  +   +  H    S
Sbjct: 699  TAGTKKNYRLLELQTPDALCQSMPQPNRQLFLYKIIIEPNFSTADVDDN-VKVFHDLLQS 757

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSE-ENLSNTLIFMDYLFTKV 234
             +   ILT K IP +     +   GE++  I+     + ++   +L     F   LF  V
Sbjct: 758  NRTYGILTMKSIPPLSLMRFYQSFGEIKTQIDPNPMKLSINNVHDLEQLKRFNCILFRDV 817

Query: 235  LKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENF 294
            L + K   ++D     +S+  VP   +S    IDW  +   S      +++ P  ER+N 
Sbjct: 818  LGVWKEFFVYDLT---DSFITVPINGNS----IDWDIVR--SFQTWSEVKEKPISERKNA 868

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGL 354
            +++E+ +   VV  WY   FE  Y  V  +     P S FP++  TY+++  Y   KY  
Sbjct: 869  IYNENDWLHRVVCKWYSTDFESRYI-VTRVSNEKTPFSDFPNK--TYRSYAAYVMDKYPS 925

Query: 355  --QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
              ++   +Q L++V   +  LN + P              E+ RR+ R + G  + L+PE
Sbjct: 926  IDKVVGEDQFLIEVKGITRNLNLMHP-----------GEGEDGRRQ-RTNRG-PETLIPE 972

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            LC    +P  LW K++ LPS L R+  LL A+ IR A+   +GL 
Sbjct: 973  LCHNFMYPGDLWLKAIVLPSALRRIYYLLHAEHIRIAINRYVGLN 1017


>gi|160285502|pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
            Human Dicer
 gi|160285503|pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
            Human Dicer
 gi|160285504|pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
            Human Dicer
          Length = 200

 Score =  241 bits (615), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 124/196 (63%), Positives = 150/196 (76%), Gaps = 12/196 (6%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            L+ GF+ FE+ INYRFK+K+YLLQA THASY  NT+TDCYQRLEFLGDAILDYLIT+HLY
Sbjct: 4    LISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY 63

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            ED R HSPG LTDLRSALVNN IFASLAV+  +H +FK +SP L  VI  FV+ Q E + 
Sbjct: 64   EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN- 122

Query: 1095 TLNQEYYLMEGECDEA-------EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
                E   M+ E   +       EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+VYY 
Sbjct: 123  ----EMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYP 178

Query: 1148 IMKSEIERLSVSVPKS 1163
            +M+  IE+ S +VP+S
Sbjct: 179  MMRPLIEKFSANVPRS 194


>gi|158300291|ref|XP_320248.4| AGAP012289-PA [Anopheles gambiae str. PEST]
 gi|157013088|gb|EAA00264.4| AGAP012289-PA [Anopheles gambiae str. PEST]
          Length = 1672

 Score =  241 bits (614), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 155/466 (33%), Positives = 245/466 (52%), Gaps = 32/466 (6%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK+A+++++   + + HEG L+  + + VSN NL            + A 
Sbjct: 1215 ERFEVLGDAFLKFAVSVYILFRHTSWHEGYLTTCKGRMVSNRNLLYCAMGYGLPGKIKAH 1274

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAG-FPASLWNC------LSLPNLKELSPEKVLEII 894
             F+P+++W+PP   VP  +  A+++A   PA L+N       +    + + + +K L +I
Sbjct: 1275 PFDPKNDWVPPLSTVPGAVRRAMVDANESPALLYNLKLTEEEIQSGVVAQATVDKFLPLI 1334

Query: 895  KQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
            +Q       T+   +Q V          I DK +AD  EAL+G  +   G   +  F+S 
Sbjct: 1335 EQAPAPSQSTLHTVLQQV---------QIRDKVVADVTEALLGVCVKTVGYERSFRFLSH 1385

Query: 955  LGL--------KVIPPVTNPES-----KHLSDVLLDGFDKFEESINYRFKDKSYLLQAMT 1001
            LG+         ++   T P       +H  D LL   ++ E ++ YRF++++YLLQA T
Sbjct: 1386 LGIIPKGADVPMLLRTTTFPIGDYFPVRHKVDQLLCNPERIEATLGYRFRNRTYLLQAFT 1445

Query: 1002 HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASL 1061
            H SY  N+LT  YQ+LEFLGDA+LD+L++ ++YE   + SPG LTDLRSALVNN+  A +
Sbjct: 1446 HTSYTSNSLTGSYQQLEFLGDAVLDFLVSMYIYERNPSMSPGQLTDLRSALVNNVNLACV 1505

Query: 1062 AVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVPKAL 1119
             VR   H      SP L + I +FV +   +    +    L+  E D   AE ++VPK L
Sbjct: 1506 LVRNELHRHILSQSPMLTDAIGKFVAVHRCHRNQGSNWVRLLTEESDTPMAEYVDVPKVL 1565

Query: 1120 GDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
            GD+ E++ GAIYLDSG  L   W+V + +++ EI   +   P   +R+L E    +  FS
Sbjct: 1566 GDVLEALIGAIYLDSGNDLAATWEVCFRLLRDEIADFTRKTPIQVVRQLYEHPEASPHFS 1625

Query: 1180 KPEKLADGRRVRVT-VEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
             P    +   V+++      + +  G G+N   AK  AAK AL  +
Sbjct: 1626 APFVEEEVVYVKLSYTHRSQRQTVYGFGKNKDDAKRAAAKIALSKI 1671



 Score =  133 bits (335), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 212/465 (45%), Gaps = 34/465 (7%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI ++NRYC  +P D+FT     +T   I    + +   +++LP+ S ++  + G  M 
Sbjct: 576  SAIQLLNRYCMSMPRDLFT--GSNVTWERIDRSPTEII-VTVKLPLQSTVREVIHGQTMK 632

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPV-TKEFINLYENTEPVVPKTPEIETYPDSTK 121
               LA + AA  AC+ L+E+ EL+  L+P+ TK+ +   E +E       ++   P+  +
Sbjct: 633  NLKLAKQSAAFNACKRLFEVGELNMYLLPIATKDKVE--ELSEQYFKLWRKMSDEPNPKQ 690

Query: 122  RRQFYHKRMASCF-----TNCRPSVNT-PCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
                 + R            C P  +   CY+Y V+M+      +   +  R      +S
Sbjct: 691  AGTMKYVRGHKIVYPEETVGCTPQADGEQCYVYIVRMRAHFD-ANTHLENVRIFQELYSS 749

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSI--ELIDKNVVLSEENLSNTLIFMDYLFTK 233
                 ILT K +P++    +F   G + V I  E +   +      L     F   LF  
Sbjct: 750  ANNFGILTRKRLPRLARMKLFVTLGAIGVEIVPEPVCITLAPDSGELQRLKRFHLLLFRD 809

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
            +LK+ K   + D    EN + IVP +       IDW+ M      +     +   + R++
Sbjct: 810  LLKVWKPFTVLDALPEENGFLIVPMLRSQS---IDWELMGKFP--YLRPAAETSTRARQH 864

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
              F+  ++   VV PWY+N  +  Y  V  +  ++ P S FP+    Y ++E+Y++ ++ 
Sbjct: 865  LRFETEQYLLRVVHPWYKNDPDQNYV-VVRVRDDLRPTSPFPN--AKYDSYEQYFAQEHH 921

Query: 354  -LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
             + +++ +Q L++V   +  LN L P      G   A     TR    E    +++L+PE
Sbjct: 922  QVVVRHEDQFLIEVKGITTSLNRLHP------GAE-ADGGASTRSRYWEF---QEILIPE 971

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            L     FPA  W K+  LPS L+R++ LLLA+ IR  +A    +G
Sbjct: 972  LVHNFEFPADYWLKATLLPSALHRVHYLLLAEGIRVDLARNAQVG 1016


>gi|170049284|ref|XP_001855187.1| endoribonuclease Dicer [Culex quinquefasciatus]
 gi|167871117|gb|EDS34500.1| endoribonuclease Dicer [Culex quinquefasciatus]
          Length = 1665

 Score =  237 bits (604), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 147/418 (35%), Positives = 226/418 (54%), Gaps = 34/418 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK+++++FL   +   HEG L+ ++ + VSN NL            M   
Sbjct: 1200 ERYELLGDAFLKFSVSLFLVKKHKEWHEGHLTAVKGQLVSNRNLLYCAMLINLPGMMKIH 1259

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F+P+++W PP   VP  ++  +      A +     L  LK +S E++     +K    
Sbjct: 1260 TFDPKNDWSPPLASVPHAVKQKMASINHSARV-----LYKLK-MSEEEIQAGTIEKDKYE 1313

Query: 902  DCTVDMNVQS----VVPY-NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
            D   +++VQS      P  N ++Q ++ DK  AD +EA++G  +   G + +   +S+LG
Sbjct: 1314 DFIAELDVQSRSLDTSPMQNYLSQQAMGDKMPADSMEAMLGVCVSTVGIKRSFRLLSFLG 1373

Query: 957  LKVIPPVTN---------PESKHLSDVLLDGFDKF-------EESINYRFKDKSYLLQAM 1000
              ++P   N            +  +DV  +  D F       E  ++Y FKD++YLLQA+
Sbjct: 1374 --ILPKKENLTTLLDDRIANQRLKADVTKNEVDSFLISPGRIERILDYTFKDRTYLLQAL 1431

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            THASY  N +T  YQ+LEF+GDA+LD+LI+ ++YE     SPG LTDLRSALVNNI  A 
Sbjct: 1432 THASYPTNRITGSYQQLEFVGDAVLDFLISAYIYEQNPTMSPGQLTDLRSALVNNITLAC 1491

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE-----AEDIEV 1115
            + VR G H +    S  L + + +FV  Q  +   +  +  L+  E +      AE ++V
Sbjct: 1492 ILVRHGLHLYILSESASLTDTVSKFVAFQEAHKHEITDQVNLLSEESERCQGAMAEFVDV 1551

Query: 1116 PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP 1173
            PKALGD+FES+ GA++LDSG  L+  W+V Y +M  EI   SV  P   +R L E +P
Sbjct: 1552 PKALGDVFESLIGAVFLDSGNDLEVTWRVIYGLMHHEIATFSVETPIQIVRRLYEWKP 1609



 Score =  191 bits (485), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 220/465 (47%), Gaps = 36/465 (7%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM--FTCSIRLPINSPLKRSVTGHK 60
            ++I ++NRYC  +P D FT       ++  + DD        ++ LP+ S ++  V G  
Sbjct: 569  SSIQLLNRYCMGMPRDAFTN----TNVTWERHDDKYTGKIVVAVLLPLQSTVRDKVFGQP 624

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPV--TKEFINLYENTEPVVPKTPEIETYPD 118
            M    LA R AA EACR LYE  EL++ L+P+   ++  N+ E       +  E      
Sbjct: 625  MTNVKLAKRSAAFEACRKLYEAGELNDHLIPIDSKRQLANVSEVYFRHWKQFEEESAKQA 684

Query: 119  STKRRQFYHK-RMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             T++    H+ R  S  + C P    PCY+Y +++       D QN+     H   +S  
Sbjct: 685  GTQKNVRNHQIRYPSQTSGCCPQPGKPCYIYVLRIAAGFN-SDVQNENIETFHTLYSSEN 743

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNV--VLSEENLSNTLIFMDYLFTKVL 235
               I+TTK +P +     F   G + V ++     V    S+ +L+    F   LF  VL
Sbjct: 744  NFGIMTTKPLPVLARMKFFVSLGLINVHLDPTPIRVENAGSDADLAALKQFQLMLFRDVL 803

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSDSE---QIVIDWKFMTLISEHHNDVIQDIPEKERE 292
            +L K  ++ D +   NS+ +VP     +   Q+V D+ F+   SE        +    R 
Sbjct: 804  RLWKEFLVLDSSNEANSFLVVPLAQSRQIDWQVVKDFPFLAQPSE--------LSTVARS 855

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
              VFD  ++R  V++PWYR   E  Y  V  +  ++ P S FP+    YQT+E+Y+   Y
Sbjct: 856  RMVFDAKQYRHRVILPWYRTDRERAYV-VTAVHEHLTPGSPFPN--EKYQTYEDYFGTVY 912

Query: 353  GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
            G QI N +Q L++V   +  LN L+P   +  G +       T  EI         L+PE
Sbjct: 913  GQQICNKKQFLIEVKGITTWLNRLSPGDED-DGKSATRAKNWTFHEI---------LIPE 962

Query: 413  LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            LC    FPA  W K+  LPS L+R+N LLLA+ IR  +A+E  +G
Sbjct: 963  LCHNFAFPADYWLKATLLPSALHRINFLLLAENIRVELATEANVG 1007


>gi|371486408|gb|AEX31249.1| Dicer 2 [Aedes albopictus]
          Length = 1625

 Score =  235 bits (599), Expect = 1e-58,   Method: Compositional matrix adjust.
 Identities = 144/417 (34%), Positives = 226/417 (54%), Gaps = 35/417 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK+A +++L   +   HEG L+ ++ + VSN NL     +      +   
Sbjct: 1158 ERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKVH 1217

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD- 900
            KF+P+++W PP   VPK ++  +      A +   L++ +          E IK   VD 
Sbjct: 1218 KFDPKNDWQPPLATVPKNIKQTMQAVNHSARVLYRLTMTD----------EEIKTGVVDP 1267

Query: 901  -----LDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                     ++M+  +  P    N ++Q ++ DK+ AD +EAL+G  +   G + +   +
Sbjct: 1268 KTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEALLGVCVQTVGIQRSFKLL 1327

Query: 953  SWLG--------LKVI-PPVTNPESK-HLSDVLLDGF----DKFEESINYRFKDKSYLLQ 998
             + G        LK++   + N   + H+    +DGF     + E  + Y+FKD++YLLQ
Sbjct: 1328 PYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHSRIESILGYKFKDRTYLLQ 1387

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A+THASY  N +T  YQ+LEFLGDA+LD+LI+ +++E     SPG LTDLRSALVNNI  
Sbjct: 1388 ALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSPGQLTDLRSALVNNITL 1447

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVP 1116
            A L VR G H +    S    + + +FV  Q +N   +  +  L+  E D   AE ++VP
Sbjct: 1448 ACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNLLVEESDRKMAEFVDVP 1507

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP 1173
            KALGD+FES+  A++LDSG      W+V Y IM +EI   + + P   +R+L E +P
Sbjct: 1508 KALGDVFESLVAAVFLDSGNDFAVTWRVIYGIMGNEIMTFTENTPIQIVRQLYEFKP 1564



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 209/469 (44%), Gaps = 79/469 (16%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +A+ ++NRYC  +P D FT         ++K    ++    + LP+ S ++  + G+ M 
Sbjct: 566 SAVQLLNRYCMGMPRDAFTNTNVTWERVDLKNGQIVV---EVMLPLQSTVREKILGNPMR 622

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVT-------------KEFINLYENTEPVVPK 109
              LA R AA  ACR LYE KEL   L+P+              + + +  E++  +   
Sbjct: 623 NIKLAKRSAAFNACRKLYENKELSEHLIPIDCRNQLNNLKDVYFRHWADFDEDSGKLAGT 682

Query: 110 TPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
              I T+         Y K+   CF    P    PCY+Y +++       D  N+     
Sbjct: 683 QKCIRTHAIE------YPKQTTGCF----PEPGKPCYIYVLRIGAGFE-QDPSNENVNIF 731

Query: 170 HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDY 229
           H   NS     I+TTK +P                        V+L + +++        
Sbjct: 732 HSLYNSENNFGIMTTKPLP------------------------VLLRQFHIT-------- 759

Query: 230 LFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
           +F  VL+L K  +++D +   NS+ +VP    +    +DW+ +    ++ ++   ++   
Sbjct: 760 VFRDVLRLWKDFLVYDYDNGINSFMVVPLKKSTH---LDWELIRQF-QYLSEPPSEMSTM 815

Query: 290 ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
            R    F+   +R  V++PWY+N  E  Y  V  +  ++ P S FP+    Y ++  Y+S
Sbjct: 816 ARSRMDFEADNYRHKVILPWYKNNKEQPYV-VTMVHEHLTPGSPFPNA--EYGSYANYFS 872

Query: 350 LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK-KQL 408
             Y L +   +Q L++V   +  LN L P      G+      E+  +  R    +  ++
Sbjct: 873 EAYHLAVVKPDQFLIEVKGITSYLNRLNP------GV------EDDGKSTRSKHWRFNEI 920

Query: 409 LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
           L+PELC  + FPA  W K+  LPS L+R++ LLLA++IR  +A+   +G
Sbjct: 921 LIPELCHNYQFPADYWLKATLLPSALHRIHYLLLAEKIRVDLATGANVG 969


>gi|157167186|ref|XP_001652212.1| dicer-1 [Aedes aegypti]
 gi|108877338|gb|EAT41563.1| AAEL006794-PA [Aedes aegypti]
          Length = 1658

 Score =  234 bits (597), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 159/476 (33%), Positives = 248/476 (52%), Gaps = 37/476 (7%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK++I+++L   +   HEG L+ ++ + VSN NL     +      +   
Sbjct: 1191 ERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKIH 1250

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KF+P+++W PP   VPK ++  +      A +   L+L        E    ++  K  D 
Sbjct: 1251 KFDPKNDWQPPLATVPKNIKRTMQSVNHSARVLYRLTLT-----EEEIKTGVVTAKNSD- 1304

Query: 902  DCTVDMNVQSVVP-----YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
            D    + +   +P      N ++Q ++ DK+ AD +EAL+G  +   G   +   +   G
Sbjct: 1305 DFIAQLELHGNMPDPSPMANYLSQQTMGDKTPADAMEALLGVCVQSVGIERSFKLLPHFG 1364

Query: 957  LKVIPPVTNP--------ESKHLS--------DVLLDGFDKFEESINYRFKDKSYLLQAM 1000
              ++P   N         E++ L         D  L  + + E  + Y+FKD++YLLQA+
Sbjct: 1365 --ILPKTHNVLKLLADKIENQRLKTHIDIREVDAFLKNYRRIESILGYKFKDRTYLLQAL 1422

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            THASY  N +T  YQ+LEFLGDA+LD+LI+ +++E     SPG LTDLRSALVNN+  A 
Sbjct: 1423 THASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSPGQLTDLRSALVNNVTLAC 1482

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVPKA 1118
            + VR G H +    S    + + +FV  Q +N   +  +  L+  E D   AE ++VPKA
Sbjct: 1483 ILVRHGLHLYILAESASFTDTVSKFVLFQEQNKHEITDQVNLLVEESDRKMAEFVDVPKA 1542

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE-NAR 1177
            LGD+FES+  A++LDSG      W+V Y +M +EI   + + P   +R+L E +P     
Sbjct: 1543 LGDVFESLVAAVFLDSGNDFAATWQVIYGMMGNEILTFTENTPIQIVRQLYEFKPSCKPT 1602

Query: 1178 FSKPEKLADGRRVRVTVEVFGKGSYK-GIGRNYCIAKCTAAKCAL----KHLKSAK 1228
            FS+     D   V++  E+  +     G G+N   AK  AAK AL    KH +SAK
Sbjct: 1603 FSRAIPDEDTVLVKLRYEIRNQQHEAYGFGQNKDDAKRAAAKAALQVLRKHYRSAK 1658



 Score =  165 bits (418), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 219/467 (46%), Gaps = 41/467 (8%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI ++NRYC  +P D FT     +T   I   D  +    + LP+ S ++  ++G+ M 
Sbjct: 566  SAIQLLNRYCMGMPRDAFTNTN--VTWERIDLKDGRIIV-EVLLPLQSTVREKISGNPMR 622

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPK-----TPEIETYP 117
               LA R AA  ACR LYE KEL+  L+P+  ++     N + V  +       ++    
Sbjct: 623  NIKLAKRSAAFNACRKLYENKELNEHLIPIDCKY--QLNNLKDVYFRHWKDFDADLGKLA 680

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             + K  + +  +     T C P    PCY+Y +++       D  N      H   +S  
Sbjct: 681  GTQKCIRTHAIQYPKQTTECFPQPGKPCYIYVLRIAAGFA-QDPTNDNVNIFHSLYSSEN 739

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLIFMDYLFTK 233
               ++TTK +P +     F   G + V IE  +  +VL    SE  L+    F   +F  
Sbjct: 740  NFGLMTTKPLPALAKMKFFVTLGLINVHIE--ETPIVLPNGGSEIELALLRQFHVTVFRD 797

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHN--DVIQDIPEKER 291
            VLKL K  +  D +  ENS+ +VP  + +    +DWK   LI E  N  +   +I    R
Sbjct: 798  VLKLWKEFLCCDYDNEENSFLVVPLKNSTH---LDWK---LIREFQNLSEPPSEISTIAR 851

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
                F+  K+R  V++PWY+N  E  Y  V  +  ++ P S FP+    Y ++  Y+S  
Sbjct: 852  NKMEFEADKYRHKVILPWYKNNKEQPYV-VTMVHEHLTPESPFPN--PEYGSYANYFSQA 908

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK-KQLLV 410
            Y L +   +Q L++V   +  LN L P      G+      E+  +  R    +  ++L+
Sbjct: 909  YHLAVVKPDQFLIEVKGITSYLNRLNP------GV------EDDGKSTRSKHWRFNEILI 956

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            PELC  + FPA  W K+  LPS L+RL+ LLLA+ IR  +A+   +G
Sbjct: 957  PELCHNYQFPADYWLKATLLPSALHRLHYLLLAENIRVDLATGANVG 1003


>gi|371486410|gb|AEX31250.1| Dicer 2 [Aedes albopictus]
          Length = 1659

 Score =  234 bits (596), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 226/417 (54%), Gaps = 35/417 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK+A +++L   +   HEG L+ ++ + VSN NL     +      +   
Sbjct: 1192 ERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKVH 1251

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD- 900
            KF+P+++W PP   VPK ++  +      A +   L++ +          E IK   VD 
Sbjct: 1252 KFDPKNDWQPPLATVPKNIKQTMQAVNHSARVLYRLTMTD----------EEIKTGVVDP 1301

Query: 901  -----LDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                     ++M+  +  P    N ++Q ++ DK+ AD +EAL+G  +   G + +   +
Sbjct: 1302 KTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEALLGVCVQTVGMQRSFKLL 1361

Query: 953  SWLG--------LKVI-PPVTNPESK-HLSDVLLDGF----DKFEESINYRFKDKSYLLQ 998
             + G        LK++   + N   + H+    +DGF     + E  + Y+FKD++YLLQ
Sbjct: 1362 PYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHSRIESILGYKFKDRTYLLQ 1421

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A+THASY  N +T  YQ+LEFLGDA+LD+LI+ +++E     SPG LTDLRSALVNNI  
Sbjct: 1422 ALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSPGQLTDLRSALVNNITL 1481

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVP 1116
            A L VR G H +    S    + + +FV  Q +N   +  +  L+  E D   AE ++VP
Sbjct: 1482 ACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNLLVEESDRKMAEFVDVP 1541

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP 1173
            KALGD+FES+  A++LDSG      W+V Y +M +EI   + + P   +R+L E +P
Sbjct: 1542 KALGDVFESLVAAVFLDSGNDFAVTWRVIYGMMGNEIMTFTENTPIQIVRQLYEFKP 1598



 Score =  159 bits (403), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 218/473 (46%), Gaps = 53/473 (11%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +A+ ++NRYC  +P D FT         ++K    ++    + LP+ S ++  + G+ M 
Sbjct: 566  SAVQLLNRYCMGMPRDAFTNTNVTWERVDLKNGQIVV---EVMLPLQSTVREKILGNPMR 622

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVT-------------KEFINLYENTEPVVPK 109
               LA R AA  ACR LYE KEL   L+P+              + + +  E++  +   
Sbjct: 623  NIKLAKRSAAFNACRKLYENKELSEHLIPIDCRNQLNNLKDVYFRHWADFDEDSGKLAGT 682

Query: 110  TPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
               I T+         Y K+   CF    P    PCY+Y +++       D  N+     
Sbjct: 683  QKCIRTHAIE------YPKQTTGCF----PEPGKPCYIYVLRIGAGFE-QDPSNENVNIF 731

Query: 170  HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLI 225
            H   NS     I+TTK +P +     F   G + V   L++  +VL    SE  L+    
Sbjct: 732  HSLYNSENNFGIMTTKPLPVLAKMKFFVTLGLINV--HLVETPIVLPNAGSEVELALLRQ 789

Query: 226  FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQD 285
            F   +F  VL+L K  +++D +   NS+ +VP    +    +DW+ +    ++ ++   +
Sbjct: 790  FHVTVFRDVLRLWKDFLVYDYDNGINSFLVVPLKKSTH---LDWELIRQF-QYLSEPPSE 845

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            +    R    F+   +R  V++PWY+N  E  Y  V  +  ++ P S FP+    Y ++ 
Sbjct: 846  MSTMARSRMDFEADNYRHKVILPWYKNNKEQPYV-VTMVHEHLTPGSPFPNA--EYGSYA 902

Query: 346  EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK 405
             Y+S  Y L +   +Q L++V   +  LN L P      G+      E+  +  R    +
Sbjct: 903  NYFSEAYHLAVVKPDQFLIEVKGITSYLNRLNP------GV------EDDGKSTRSKHWR 950

Query: 406  -KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
              ++L+PELC  + FPA  W K+  LPS L+R++ LLLA++IR  +A+   +G
Sbjct: 951  FNEILIPELCHNYQFPADYWLKATLLPSALHRIHYLLLAEKIRVDLATGANVG 1003


>gi|371486404|gb|AEX31247.1| Dicer 2 isoform A [Aedes albopictus]
 gi|371486406|gb|AEX31248.1| Dicer 2 isoform B [Aedes albopictus]
          Length = 1659

 Score =  233 bits (595), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 143/417 (34%), Positives = 226/417 (54%), Gaps = 35/417 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK+A +++L   +   HEG L+ ++ + VSN NL     +      +   
Sbjct: 1192 ERYELLGDAFLKFATSLYLIKYHKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKVH 1251

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD- 900
            KF+P+++W PP   VPK ++  +      A +   L++ +          E IK   VD 
Sbjct: 1252 KFDPKNDWQPPLATVPKNIKQTMQAVNHSARVLYRLTMTD----------EEIKTGVVDP 1301

Query: 901  -----LDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                     ++M+  +  P    N ++Q ++ DK+ AD +EAL+G  +   G + +   +
Sbjct: 1302 KTSDEFIAQLEMHGNTPDPSPMANYLSQQTMGDKTPADAMEALLGVCVQTVGMQRSFKLL 1361

Query: 953  SWLG--------LKVI-PPVTNPESK-HLSDVLLDGF----DKFEESINYRFKDKSYLLQ 998
             + G        LK++   + N   + H+    +DGF     + E  + Y+FKD++YLLQ
Sbjct: 1362 PYFGMLPKTHDVLKLLDEKIENQRLRTHIDYREVDGFLKNHSRIESILGYKFKDRTYLLQ 1421

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A+THASY  N +T  YQ+LEFLGDA+LD+LI+ +++E     SPG LTDLRSALVNNI  
Sbjct: 1422 ALTHASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSPGQLTDLRSALVNNITL 1481

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVP 1116
            A L VR G H +    S    + + +FV  Q +N   +  +  L+  E D   AE ++VP
Sbjct: 1482 ACLLVRHGLHLYILAESASFSDTVNKFVMFQEQNKHEITDQVNLLVEESDRKMAEFVDVP 1541

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEP 1173
            KALGD+FES+  A++LDSG      W+V Y +M +EI   + + P   +R+L E +P
Sbjct: 1542 KALGDVFESLVAAVFLDSGNDFAVTWRVIYGMMGNEIMTFTENTPIQIVRQLYEFKP 1598



 Score =  159 bits (403), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 128/473 (27%), Positives = 218/473 (46%), Gaps = 53/473 (11%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +A+ ++NRYC  +P D FT         ++K    ++    + LP+ S ++  + G+ M 
Sbjct: 566  SAVQLLNRYCMGMPRDAFTNTNVTWERVDLKNGQIVV---EVMLPLQSTVREKILGNPMR 622

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVT-------------KEFINLYENTEPVVPK 109
               LA R AA  ACR LYE KEL   L+P+              + + +  E++  +   
Sbjct: 623  NIKLAKRSAAFNACRKLYENKELSEHLIPIDCRNQLHNLKDVYFRHWADFDEDSGKLAGT 682

Query: 110  TPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
               I T+         Y K+   CF    P    PCY+Y +++       D  N+     
Sbjct: 683  QKCIRTHAIE------YPKQTTGCF----PEPGKPCYIYVLRIGAGFE-QDPSNENVNIF 731

Query: 170  HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLI 225
            H   NS     I+TTK +P +     F   G + V   L++  +VL    SE  L+    
Sbjct: 732  HSLYNSENNFGIMTTKPLPVLAKMKFFVTLGLINV--HLVETPIVLPNAGSEVELALLRQ 789

Query: 226  FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQD 285
            F   +F  VL+L K  +++D +   NS+ +VP    +    +DW+ +    ++ ++   +
Sbjct: 790  FHVTVFRDVLRLWKDFLVYDYDNGINSFLVVPLKKSTH---LDWELIRQF-QYLSEPPSE 845

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            +    R    F+   +R  V++PWY+N  E  Y  V  +  ++ P S FP+    Y ++ 
Sbjct: 846  MSTMARSRMDFEADNYRHKVILPWYKNNKEQPYV-VTMVHEHLTPGSPFPNA--EYGSYA 902

Query: 346  EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK 405
             Y+S  Y L +   +Q L++V   +  LN L P      G+      E+  +  R    +
Sbjct: 903  NYFSEAYHLAVVKPDQFLIEVKGITSYLNRLNP------GV------EDDGKSTRSKHWR 950

Query: 406  -KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
              ++L+PELC  + FPA  W K+  LPS L+R++ LLLA++IR  +A+   +G
Sbjct: 951  FNEILIPELCHNYQFPADYWLKATLLPSALHRIHYLLLAEKIRVDLATGANVG 1003


>gi|57236096|gb|AAW48725.1| dicer-2 [Aedes aegypti]
          Length = 1658

 Score =  231 bits (590), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 158/476 (33%), Positives = 248/476 (52%), Gaps = 37/476 (7%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD+FLK++I+++L   +   HEG L+ ++ + VSN NL     +      +   
Sbjct: 1191 ERYELLGDAFLKFSISLYLVKYHKEWHEGFLTAVKGQIVSNRNLVYCAIKYGLPGMLKIH 1250

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KF+P+++W PP   VPK ++  +      A +   L+L        E    ++  K  D 
Sbjct: 1251 KFDPKNDWQPPLATVPKNIKRTMQSVNHSARVLYRLTLT-----EEEIKTGVVTAKNSD- 1304

Query: 902  DCTVDMNVQSVVP-----YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
            D    + +   +P      N ++Q ++ DK+ AD +EAL+G  +   G   +   +   G
Sbjct: 1305 DFIAQLELHGNMPDPSPMANYLSQQTMGDKTPADAMEALLGVCVQSVGIERSFKLLPHFG 1364

Query: 957  LKVIPPVTNP--------ESKHLS--------DVLLDGFDKFEESINYRFKDKSYLLQAM 1000
              ++P   N         E++ L         D  L  + + E  + Y+FKD++YLLQA+
Sbjct: 1365 --ILPKTHNVLRLLADKIENQRLKTHIDIREVDAFLKNYRRIEGILGYKFKDRTYLLQAL 1422

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            THASY  N +T  YQ+LEFLGDA+LD+LI+ +++E     SPG LTDLRSALVNN+  A 
Sbjct: 1423 THASYPTNRITGSYQQLEFLGDAVLDFLISMYIFEQNPTMSPGQLTDLRSALVNNVTLAC 1482

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE--AEDIEVPKA 1118
            + VR G H +    S    + + +FV  Q ++   +  +  L+  E D   AE ++VPKA
Sbjct: 1483 ILVRHGLHLYILAESASFTDTVSKFVLFQEQHKHEITDQVNLLVEESDRKMAEFVDVPKA 1542

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE-NAR 1177
            LGD+FES+  A++LDSG      W+V Y +M +EI   + + P   +R+L E +P     
Sbjct: 1543 LGDVFESLVAAVFLDSGNDFAATWQVIYGMMGNEILTFTENTPIQIVRQLYEFKPSCKPT 1602

Query: 1178 FSKPEKLADGRRVRVTVEVFGKGSYK-GIGRNYCIAKCTAAKCAL----KHLKSAK 1228
            FS+     D   V++  E+  +     G G+N   AK  AAK AL    KH +SAK
Sbjct: 1603 FSRAIPDEDTVLVKLRYEIRNQQHEAYGFGQNKDDAKRAAAKAALQVLRKHYRSAK 1658



 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 138/467 (29%), Positives = 219/467 (46%), Gaps = 41/467 (8%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI ++NRYC  +P D FT     +T   I   D  +    + LP+ S ++  ++G+ M 
Sbjct: 566  SAIQLLNRYCMGMPRDAFTNTN--VTWERIDLKDGRIIV-EVLLPLQSTVREKISGNPMR 622

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPK-----TPEIETYP 117
               LA R AA  ACR LYE KEL+  L+P+  ++     N + V  +       ++    
Sbjct: 623  NIKLAKRSAAFNACRKLYENKELNEHLIPIDCKY--QLNNLKDVYFRHWKDFDADLGKLA 680

Query: 118  DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
             + K  + +  +     T C P    PCY+Y +++       D  N      H   +S  
Sbjct: 681  GTQKCIRTHAIQYPKQTTECFPQPGKPCYIYVLRIAAGFA-QDPTNDNVNIFHSLYSSEN 739

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLIFMDYLFTK 233
               ++TTK +P +     F   G + V IE  +  +VL    SE  L+    F   +F  
Sbjct: 740  NFGLMTTKPLPALAKMKFFVTLGLINVHIE--ETPIVLPNGGSEIELALLRQFHVTVFRD 797

Query: 234  VLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHN--DVIQDIPEKER 291
            VLKL K  +  D +  ENS+ +VP  + +    +DWK   LI E  N  +   +I    R
Sbjct: 798  VLKLWKEFLCCDYDNEENSFLVVPLKNSTH---LDWK---LIREFQNLSEPPSEISTIAR 851

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
                F+  K+R  V++PWY+N  E  Y  V  +  ++ P S FP+    Y ++  Y+S  
Sbjct: 852  NKMEFEADKYRHKVILPWYKNNKEQPYV-VTMVHEHLTPESPFPN--PEYGSYANYFSQA 908

Query: 352  YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGK-KQLLV 410
            Y L +   +Q L++V   +  LN L P      G+      E+  +  R    +  ++L+
Sbjct: 909  YHLAVVKPDQFLIEVKGITSYLNRLNP------GV------EDDGKSTRSKHWRFNEILI 956

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
            PELC  + FPA  W K+  LPS L+RL+ LLLA+ IR  +A+   +G
Sbjct: 957  PELCHNYQFPADYWLKATLLPSALHRLHYLLLAENIRVDLATGANVG 1003


>gi|379055833|emb|CCD32420.1| dicer-1b, partial [Acyrthosiphon svalbardicum]
 gi|379055835|emb|CCD32421.1| dicer-1b, partial [Acyrthosiphon kondoi]
          Length = 272

 Score =  229 bits (583), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/299 (44%), Positives = 161/299 (53%), Gaps = 82/299 (27%)

Query: 738  KDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP---------------- 781
            K +K E     K+ +     N +    FSFDFQPDL  H GPSP                
Sbjct: 21   KCIKNEIHKNNKTIDSINKVNDAQTETFSFDFQPDLNYHPGPSPSILLQALTTSNANDGI 80

Query: 782  --KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
              +RLETIGDSFLKYA+T +LYCT+ NVHEG LS LRS  VSN NL++LGK K+FGE MI
Sbjct: 81   NLERLETIGDSFLKYAVTAYLYCTHNNVHEGILSDLRSNHVSNLNLYRLGKLKMFGERMI 140

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            +TKFEPR NWLPP +  P  LE A+I +                                
Sbjct: 141  STKFEPRSNWLPPCFIEPHKLEKAVINSNIS----------------------------- 171

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                              +TQH I DKSIADCVEALIGAYLI CG RGALLFMSWLG++V
Sbjct: 172  ------------------ITQHIINDKSIADCVEALIGAYLISCGNRGALLFMSWLGIRV 213

Query: 960  IPPVTN--------PESKHLSDV---------LLDGFDKFEESINYRFKDKSYLLQAMT 1001
            +  + +        P S  L ++         L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 214  LNTLDDSKLGYLKPPSSSILHNINDSEGELTKLMDGFESFEQHLGYCFQDRSYLLQAMT 272


>gi|379055829|emb|CCD32418.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055831|emb|CCD32419.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055837|emb|CCD32422.1| dicer-1b, partial [Acyrthosiphon pisum]
 gi|379055843|emb|CCD32425.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 272

 Score =  226 bits (576), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 150/274 (54%), Gaps = 86/274 (31%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL  H GPSP                  +RLETIGDSFLKYA+T +LYCT+ N
Sbjct: 48   FSFDFQPDLNYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNN 107

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEG LS LRS  VSN NL++LGK K+FGE MI+TKFEPR NWLPP Y  P  LE A+I 
Sbjct: 108  VHEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVIN 167

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            +                                                  +TQH   DK
Sbjct: 168  SNIS-----------------------------------------------ITQHITNDK 180

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKV-------------IPP------VTNPE 967
            SIADCVEALIGAYLI CG RGALLFMSWLG+ V             +PP      V +PE
Sbjct: 181  SIADCVEALIGAYLISCGTRGALLFMSWLGITVLNTLDDSKLGYLKLPPSPLLRNVNDPE 240

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMT 1001
             +     L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 241  GELTK--LMDGFESFEQHLGYYFQDRSYLLQAMT 272



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 32/81 (39%), Positives = 44/81 (54%), Gaps = 9/81 (11%)

Query: 979  FDKFEESINYR-FKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYE 1035
            FD F+  +NY      S LLQA+T A+       D Y  +RLE +GD+ L Y +T +LY 
Sbjct: 50   FD-FQPDLNYHPGPSPSILLQALTTANAI-----DGYDLERLETIGDSFLKYAVTAYLYC 103

Query: 1036 DERAHSPGTLTDLRSALVNNI 1056
                   G L+DLRS  V+N+
Sbjct: 104  THNNVHEGILSDLRSNHVSNL 124


>gi|379055841|emb|CCD32424.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 272

 Score =  226 bits (576), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/274 (47%), Positives = 150/274 (54%), Gaps = 86/274 (31%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
            FSFDFQPDL  H GPSP                  +RLETIGDSFLKYA+T +LYCT+ N
Sbjct: 48   FSFDFQPDLNYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNN 107

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
            VHEG LS LRS  VSN NL++LGK K+FGE MI+TKFEPR NWLPP Y  P  LE A+I 
Sbjct: 108  VHEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVIN 167

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            +                                                  +TQH   DK
Sbjct: 168  SNIS-----------------------------------------------ITQHITNDK 180

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKV-------------IPP------VTNPE 967
            SIADCVEALIGAYLI CG RGALLFMSWLG+ V             +PP      V +PE
Sbjct: 181  SIADCVEALIGAYLISCGTRGALLFMSWLGITVLNTLDDSKLGYLKLPPSPLLRNVNDPE 240

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMT 1001
             +     L+DGF+ FE+ + Y F+D+SYLLQAMT
Sbjct: 241  GELTK--LMDGFESFEQHLGYYFQDRSYLLQAMT 272



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 979  FDKFEESINYR-FKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYE 1035
            FD F+  +NY      S LLQA+T A+       D Y  +RLE +GD+ L Y +T +LY 
Sbjct: 50   FD-FQPDLNYHPGPSPSILLQALTTANAI-----DGYDLERLETIGDSFLKYAVTAYLYC 103

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLA 1062
                   G L+DLRS  V+N+    L 
Sbjct: 104  THNNVHEGILSDLRSNHVSNLNLYRLG 130


>gi|161579129|gb|ABX72052.1| Dicer-1 protein [Tribolium castaneum]
          Length = 157

 Score =  226 bits (575), Expect = 7e-56,   Method: Composition-based stats.
 Identities = 106/157 (67%), Positives = 125/157 (79%), Gaps = 17/157 (10%)

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTN-----------PESKHLS------DVLL 976
            ALIGAYLIECGPRGALLFM+WLG++V+P + +           P S HL+      D+LL
Sbjct: 1    ALIGAYLIECGPRGALLFMAWLGIRVLPQLEDGTYGEIELPKSPLSNHLTYPREELDMLL 60

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            DG+D+FE  I Y+F+D+SYLLQA+THAS+  NTLTDCYQRLEFLGDA+LDYLITRHLYED
Sbjct: 61   DGYDQFERHIGYKFRDRSYLLQALTHASFSPNTLTDCYQRLEFLGDAVLDYLITRHLYED 120

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
             R HSPG LTDLRSALVNN IFASLAVR GFH +F++
Sbjct: 121  TRMHSPGALTDLRSALVNNTIFASLAVRNGFHRYFRN 157


>gi|195124758|ref|XP_002006854.1| GI21295 [Drosophila mojavensis]
 gi|193911922|gb|EDW10789.1| GI21295 [Drosophila mojavensis]
          Length = 1728

 Score =  224 bits (572), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 166/511 (32%), Positives = 251/511 (49%), Gaps = 72/511 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD FLK + T++L   YP+ +EG L+ ++S  VSN NL     +    + + +T
Sbjct: 1217 ERFELLGDCFLKLSATLYLANRYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPQRICST 1276

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL---EIIKQKC 898
             F P+ +WLPP   +P+ ++    E    A+L    +L NL  +S E++       KQ  
Sbjct: 1277 LFTPKYSWLPPSVSLPQNVKALWKENPGVAALVGPHNLRNLS-ISEEELFGDGNCGKQSF 1335

Query: 899  VDLDCTVDMNVQS---VVPYN-----LVTQHSIPDKSIADCVEALIGAYLIECGPRGALL 950
            ++       N QS    + Y+      + Q  +PDK IAD +EA++G  +   G      
Sbjct: 1336 INFVNGCQANQQSHHAGLDYSSEINFCLGQVQMPDKLIADTLEAILGVVVKNYGLHHGFR 1395

Query: 951  FMSWLGL------KVIPPVTNPE----------SKHLSDVLLDGFDKFEESINYRFKDKS 994
             + + G+      K +  + + +          S+H  D  L      E+++ Y F D++
Sbjct: 1396 MLEYFGICKPDNGKPLTQLLDLQLGGSRMRTNISQHEVDGFLINHQYLEKNLGYTFCDRA 1455

Query: 995  YLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVN 1054
            YLLQA+TH S   N LT CYQ LEF+GDAILD+LI+ +++E +   +PG LTDLRSALVN
Sbjct: 1456 YLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEHKTRMTPGQLTDLRSALVN 1515

Query: 1055 NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME--------- 1104
            N   A + VR  FH F    +  L E IQ FV+ Q  +N    N    LME         
Sbjct: 1516 NTTLACICVRHRFHFFILAENALLSESIQNFVQFQETQNHRVTNHVRILMEEKDVQPEPL 1575

Query: 1105 ----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                                        GE + + +++VPKALGD+ E++  A+YLD   
Sbjct: 1576 DSDEELEMAELAAKQAKPAIREADAPKVGEFNISHNVDVPKALGDVLEALIAAVYLDC-R 1634

Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
             L+T W+V Y++ + E+   S +VP +PIR+L E +     FS P  + D  +V VT + 
Sbjct: 1635 DLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLFEHKLAKPTFSSP--VMDNNQVMVTCQF 1692

Query: 1197 FGKG---SYKGIGRNYCIAKCTAAKCALKHL 1224
                      G G N   AK +AAK AL+ L
Sbjct: 1693 ICMDKTIKVYGFGNNGKQAKLSAAKHALQKL 1723



 Score =  151 bits (382), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 138/524 (26%), Positives = 240/524 (45%), Gaps = 64/524 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKE------DDSIMFTCSIRLPINSPLKRSV 56
            +A+ +V+RYC  +PSD F  + P   + E +E      D +  +  S+ LP+NS L+ ++
Sbjct: 578  SALALVHRYCQHMPSDAFGIVLPWFKLLEQEERKAFTKDWAQKYVVSLTLPLNSALRETI 637

Query: 57   TGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK-----EFINLY-----ENTEPV 106
                MP   LA   AA + C  LY++ EL+   +P T      E  N++        + V
Sbjct: 638  YSDAMPYTRLAKISAAFKTCVKLYQMGELNERFLPTTAIERVAEIANIHFEHWKNYGDNV 697

Query: 107  VPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRG 166
              K  + E    + K    Y  +      +  P V   CY Y + ++   P  D +N   
Sbjct: 698  TFKRSDREQINSNMKT---YATKYPEELNDAMPQVGATCYAYEISVE---PHYD-RNDYT 750

Query: 167  RKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLI 225
              I+    + +  A+L TK +P++   P+F+  G++   +    + VV+ +EE L     
Sbjct: 751  SHIYDSLQTRRNYALLLTKRLPRMAEMPLFSHQGKMHAHVAEQPRAVVIQTEEQLEQLQH 810

Query: 226  FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDW----KFMTLISEHHND 281
            F   +F  +L++ +   +FD + +ENS+ +VP +S    + IDW    +F  L   H   
Sbjct: 811  FHVMIFRDILRIWQPFFVFDRHSNENSFLVVP-LSAMPGVDIDWPLVQQFQRLPKAHSRS 869

Query: 282  VI--QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
            +   Q +P    E+FV         +V  WY N ++     V ++ T++ P SM   +  
Sbjct: 870  LAERQQLPPPNPEDFV-------GTIVTQWYAN-YDEKRMLVTKVHTDLTPLSMMEEKHQ 921

Query: 340  TYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETR 396
              + + E+   KY   I ++   +Q L++V   S +LNF    YV ++   + ++++   
Sbjct: 922  D-KNYYEFTMSKYRNYIGDVVHKQQFLIEVRELSDQLNF----YVQQR---VKSSAQSKA 973

Query: 397  REIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
            R        K +L+PELC    FP  LW K + LPSIL RL+ +L A+ +R  +   +GL
Sbjct: 974  R-------AKVMLIPELCFNFGFPGDLWVKLLFLPSILRRLHYMLHAETLRVRINKYLGL 1026

Query: 457  GKVILDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTE 499
             K+  +     P P    W +++  +  G      N +  DD E
Sbjct: 1027 DKMPQNGVDYRPRPLEIDWSLRRNVDHQG------NAMHADDYE 1064


>gi|195380844|ref|XP_002049171.1| GJ20897 [Drosophila virilis]
 gi|194143968|gb|EDW60364.1| GJ20897 [Drosophila virilis]
          Length = 1722

 Score =  223 bits (568), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 168/512 (32%), Positives = 249/512 (48%), Gaps = 75/512 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD FLK + T++L   YP+ +EG L+ ++S  VSN NL     +      + +T
Sbjct: 1212 ERFELLGDCFLKLSATLYLANKYPDWNEGILTQVKSTLVSNRNLLYCLSETDIPTRICST 1271

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL------EIIK 895
             F P+  WLPP   +P+ +     E    A+L    ++ NL  +S E+V       E + 
Sbjct: 1272 LFTPKYTWLPPSLGLPQNVLALWKEKPELAALVGPHNIRNLC-ISEEEVFGNGKCGEHVY 1330

Query: 896  QKCVDLDCTVD-------MNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
            +  VD  C  +       M+  S + +  V    +PDK IAD +EAL+G  +   G +  
Sbjct: 1331 RSFVD-GCQANQYTHHAGMDFSSEINF-CVGLVQMPDKLIADTLEALLGVVVKNYGLQHG 1388

Query: 949  LLFMSWLGL---KVIPPVTNPESKHLSDVLL---------DGF----DKFEESINYRFKD 992
               + + G+    +  P+T      L    +         DGF       E+++ Y F+D
Sbjct: 1389 FRMLEYFGICKSDIGKPLTQLLDLQLGSARMRTNISQREVDGFLINHQHLEQNLGYTFRD 1448

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
            ++YLLQA+TH S   N LT CYQ LEF+GDAILD+LI+ +++E +   +PG LTDLRSAL
Sbjct: 1449 RAYLLQALTHPSNPTNRLTGCYQELEFIGDAILDFLISAYIFEHKTRMTPGQLTDLRSAL 1508

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------- 1104
            VNN   A + VR  FH F    +  L E IQ FV+ Q ++N    N    LME       
Sbjct: 1509 VNNTTLACICVRHRFHFFILAENALLTESIQSFVQFQESQNHRVTNHVRILMEESDVQPE 1568

Query: 1105 -----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                                         GE + + +++VPKALGD+ E++  A+YLD  
Sbjct: 1569 PLDSDDELELAEAAQQQKLAINGADAPHVGEFNISHNVDVPKALGDVLEALIAAVYLDC- 1627

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVE 1195
              L T W+V Y + + E+   S +VP +PIR+L E +     FS P  + D  +V VT +
Sbjct: 1628 RDLTTTWQVVYRLFEPELLEFSRNVPLNPIRQLFEHKLAKPTFSPP--IMDNNQVMVTCQ 1685

Query: 1196 VFGKG---SYKGIGRNYCIAKCTAAKCALKHL 1224
                       G G N   AK +AAK AL+ L
Sbjct: 1686 FICMDKTIKVYGFGNNGKQAKLSAAKHALQKL 1717



 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 214/480 (44%), Gaps = 69/480 (14%)

Query: 9    NRYCARLPSDIFTRLAPIITISEIKE------DDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +RYC ++PSD F  + P   + E +E      D       SI LP+NS L+ ++    MP
Sbjct: 579  HRYCQQMPSDAFGIVLPWFKLLEPEEVKKFTSDWQRKHIVSITLPLNSTLREAIYSDPMP 638

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVT-----KEFINLYENTEPVVPKTPEIETYP 117
                A   AA +AC  L+ L EL+   +P T      E  N + +           + Y 
Sbjct: 639  CVRWAKISAAFKACIKLHALGELNERFLPTTVNERVAEIANFHFD---------HWKKYG 689

Query: 118  D--STKRR---------QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRG 166
            D  + KRR         + Y  +  S   +  P V   CY Y + ++       E+N   
Sbjct: 690  DDVTIKRRDRDPVKTNMKTYATKCPSELNDAMPRVGEVCYAYEIILEAQY----ERNDYS 745

Query: 167  RKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI-ELIDKNVVLSEENLSNTLI 225
            R I+    + +  A+L  K +P++ + P+F+  GE+ V + E   +  +  ++ L     
Sbjct: 746  RHIYDSLQTRRNYALLLRKRLPRLATMPLFSHQGEMHVHVAEQPLELTIEKQQQLEQLQH 805

Query: 226  FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDW----KFMTLISEHHND 281
            F   +F  +L++ +   + D    E++Y +VP ++ +  + IDW    +F +L       
Sbjct: 806  FHVMIFRDLLRIWQPFFMLDRCGGEHTYLVVP-LAATPAVGIDWPLVEQFQSLPKAQPFS 864

Query: 282  VIQ--DIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
            + Q   +P  + E++   E K    VV  WY N ++     V ++ T++ P SM   +  
Sbjct: 865  LAQRKQMPPPKPEDY---EGK----VVTQWYAN-YDDKRMLVTKVHTDLTPMSMMEEKQQ 916

Query: 340  TYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETR 396
              +++ ++   KY   I ++   +  L++V   + +LNF    YV ++          T+
Sbjct: 917  D-KSYYQFTMAKYSNYIGDVVHKQHFLIEVRELTDQLNF----YVKQR----------TK 961

Query: 397  REIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               +     K +L+PELC    FP  LW K + LPSIL R+  +L A+ +R  +   +GL
Sbjct: 962  SSAQSKARAKVMLIPELCFNFAFPGDLWVKLIFLPSILRRIYYMLHAETLRVRINKYLGL 1021


>gi|355683920|gb|AER97235.1| dicer 1, ribonuclease type III [Mustela putorius furo]
          Length = 294

 Score =  222 bits (566), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/296 (42%), Positives = 175/296 (59%), Gaps = 5/296 (1%)

Query: 86  DNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPC 145
           D+ LMPV KE +   E  +    +   +   P STKRRQ Y K +  C  +  P  + PC
Sbjct: 1   DDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPKPDQPC 60

Query: 146 YLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS 205
           YLY + M LT P+PDE N R RK++PPE++ +   ILT K IP++  FP++TR GEV +S
Sbjct: 61  YLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPQIPHFPVYTRSGEVTIS 120

Query: 206 IELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP--TVSDSE 263
           IEL      LS + L        Y+F+ +L+L+K  + F P  ++++Y ++P   V+DS 
Sbjct: 121 IELKKSGFTLSLQMLELITRLHQYIFSHILRLEKPALEFKPTDADSAYCVLPLNVVNDSS 180

Query: 264 QIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVA 322
            + ID+KFM  I +    + I      +   FVF    ++DAV++P YRN  +P  FYVA
Sbjct: 181 TLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFKLEDYQDAVIIPRYRNFDQPHRFYVA 240

Query: 323 EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTP 378
           ++ T++ P S FPS    Y+TF EYY  KY L + NL QPLLDVDHTS RLN LTP
Sbjct: 241 DVYTDLTPLSKFPS--PEYETFAEYYKTKYNLDLTNLTQPLLDVDHTSSRLNLLTP 294


>gi|195335297|ref|XP_002034311.1| GM19969 [Drosophila sechellia]
 gi|194126281|gb|EDW48324.1| GM19969 [Drosophila sechellia]
          Length = 1731

 Score =  215 bits (548), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 162/518 (31%), Positives = 249/518 (48%), Gaps = 88/518 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1222 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1281

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  W+PP   +P  +     E        N +   NL++L+ +    ++K  C D+
Sbjct: 1282 LFTPRYTWVPPSISLPHNVLALWREK---PEFANMIGPHNLRDLALDDEESLVKGNCSDI 1338

Query: 902  --DCTV------------DMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
              +C V              +  S V Y  V Q +I +K IAD +EAL+G  +   G + 
Sbjct: 1339 KYNCFVAGCRANAGSFYDGSDFSSEVNY-CVGQVTIANKVIADTLEALLGVIVKNYGLQH 1397

Query: 948  ALLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFK 991
            A   + +  +      K +  + N E        +++   +DGF       E ++ Y FK
Sbjct: 1398 AFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFK 1457

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D+ YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSA
Sbjct: 1458 DRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSA 1517

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------ 1104
            LVNN   A + VR   H F    +  L E I +FV  Q ++     N  + L+E      
Sbjct: 1518 LVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEADVLP 1577

Query: 1105 -----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                                         GE + + +++VPK LGD+ E++  AIYLD  
Sbjct: 1578 TPLDLDDELELPHANECISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEALIAAIYLDC- 1636

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV--- 1192
              L   W V + + + E++  + +VP +PIR+L+E +     FS P  + DG  + V   
Sbjct: 1637 RDLRRTWDVIFRLFEPELQEFTRNVPINPIRQLIEHKHAKPVFSSP--IMDGDTLMVGCQ 1694

Query: 1193 ------TVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
                  +++V+G GS K        AK +AAK AL+ L
Sbjct: 1695 FTCMEKSIKVYGFGSNKN------QAKLSAAKHALQRL 1726



 Score =  134 bits (336), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 231/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC ++P+D F  + P I + E  E + +           SI +P+N  L+ +
Sbjct: 582  NALTLLHRYCQKIPTDAFGFVIPWINLLEEGERNKLFGVNAKDKHVVSINMPLNCILRDT 641

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 642  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWN 696

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 697  KYGDSVTATVNKGEKNKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 756

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 757  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 812

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 813  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLPQGQG 872

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
             ++ ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 873  SNVQQREQQPAPRPED-FEGKIVTQWYANY--DKRMLVTKVHRELTPLS-FMENNQQEKT 928

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 929  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 979

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 980  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1034

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1035 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQANMAS 1088

Query: 520  VEIVD 524
            +EI D
Sbjct: 1089 LEITD 1093



 Score = 41.6 bits (96), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 77/186 (41%), Gaps = 40/186 (21%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL--------- 825
            N    S + LE IGD+ L + I+ +++     ++ G L+ LRS  V+N  L         
Sbjct: 1474 NRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRL 1533

Query: 826  --FKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF---PASLWNCLSLP 880
              F L + +   E++  +KF         G+ V  Y+   L EA     P  L + L LP
Sbjct: 1534 HFFILAENEKLSETI--SKFVNFQE--SQGHRVTNYVHILLEEADVLPTPLDLDDELELP 1589

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIG 937
            +  E                  C      Q V P   +N+ T   +P K++ D +EALI 
Sbjct: 1590 HANE------------------CISQEAEQGVPPKGEFNMSTNVDVP-KTLGDVLEALIA 1630

Query: 938  AYLIEC 943
            A  ++C
Sbjct: 1631 AIYLDC 1636


>gi|194880776|ref|XP_001974538.1| GG21041 [Drosophila erecta]
 gi|190657725|gb|EDV54938.1| GG21041 [Drosophila erecta]
          Length = 1729

 Score =  215 bits (547), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 159/499 (31%), Positives = 241/499 (48%), Gaps = 88/499 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++S  VSN NL    +     + +   
Sbjct: 1218 ERLEILGDSFLKLSATLYLANKYSDWNEGSLTQVKSMLVSNRNLLYCLRDTDIPKKISTV 1277

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  + T   E      L N +   NL++L+  +   ++K  C D+
Sbjct: 1278 LFTPRYTWLPPSISLPHNVLTLWREN---PELANMIGPHNLRDLALGEEESMVKGYCNDI 1334

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LV   SIPDK IAD +EAL+G  +   G 
Sbjct: 1335 NYKSFVEGCRANAQSHHAGADFSAEVNFCVGLV---SIPDKVIADTLEALLGVIVKNYGL 1391

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1392 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNSTEIDGFLINHYHLENNLGYT 1451

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH SY  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1452 FKDRGYLLQALTHPSYPTNRITGCYQELEFIGDAILDFLISVYIFENNTNMNPGALTDLR 1511

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV  Q ++     N    L+E    
Sbjct: 1512 SALVNNTTLACICVRHRLHFFILAENAMLAESISKFVHFQESQRHRVTNHVRILLEEADV 1571

Query: 1105 ---------------------------------GECDEAEDIEVPKALGDLFESVAGAIY 1131
                                             GE + + +++VPKALGD+ E++  AIY
Sbjct: 1572 QPTSLDLDDYLDMTELNNALKSISQEEQNDQPRGEFNMSTNVDVPKALGDVLEALIAAIY 1631

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            LD    L   W+V + + K E++  + +VP +PIR+L+E    N  FS P  + +  +V 
Sbjct: 1632 LDC-RDLQRTWEVIFNLFKPELQEFARNVPINPIRQLMEHRHANPLFSSP--IVEEDKVM 1688

Query: 1192 V---------TVEVFGKGS 1201
            V         +++V+G GS
Sbjct: 1689 VSCQFTCMEKSIKVYGFGS 1707



 Score =  145 bits (365), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 127/487 (26%), Positives = 219/487 (44%), Gaps = 72/487 (14%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM---------FTCSIRLPINSPLKR 54
            A+ +++RYC  +P+D F  + P I +  ++ED+ I          +  SI+LP+NS LK 
Sbjct: 578  ALILLHRYCQTMPTDAFGFVIPWINL--LQEDECIRLYGDCARSKYVVSIKLPLNSRLKD 635

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK------------EFINLYEN 102
             +    M     A   AA  AC++LY L EL+   +P+T             E    Y +
Sbjct: 636  IIYSDPMDNAKEAKMSAAFNACKLLYNLGELNERFLPITMKERVAAIADVHFEHWKKYGD 695

Query: 103  TEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-E 161
                + +   ++T P+       Y     + F + RP V   CY Y + ++     P  E
Sbjct: 696  DVTAIERKENVKTVPN-------YRTNCPAEFYDARPRVGELCYAYEIFLE-----PQFE 743

Query: 162  QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENL 220
                   ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ + E L
Sbjct: 744  SCDYTEHMYINLQTPRNYAILLRNMLPRLAEMPLFSNQGKLLVRVANEPLRVVIENTEQL 803

Query: 221  SNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHH 279
                 F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW  +T      
Sbjct: 804  ELLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLLLGADQQKRIDWPLVT------ 857

Query: 280  NDVIQDIPEKERENFVFDESK-------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
                Q +P+ E+ + +  + +       F   +V  WY N FE     V ++   + P S
Sbjct: 858  --KFQRLPQAEKSSVLQRKQQTAPRPEDFEGKIVTQWYAN-FETKRMVVTKVHRELTPLS 914

Query: 333  MFPSRTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLA 389
             F  + +  +T+ E+   KYG  I ++   ++ L++V   + +LNF    YV  +G + A
Sbjct: 915  -FMEKNHQDKTYYEFTMSKYGNHIGDVVHKDKFLIEVRELTDQLNF----YVQNRGKSSA 969

Query: 390  TTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
             +              K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R  
Sbjct: 970  QSKARA----------KIILIPELCFNYEFPGDLWLKLIFLPSILNRMHFLLHAEALRKR 1019

Query: 450  VASEIGL 456
              + + L
Sbjct: 1020 FNTYLNL 1026


>gi|80979091|gb|ABB54748.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  125 bits (313), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 121/478 (25%), Positives = 207/478 (43%), Gaps = 51/478 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFIN-----LYENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    E    DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEHKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP----SRTNTY 341
            + ++E++     E  F   +V  WY N      +    ++T VH R + P     +    
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYAN------YDKRMLVTKVH-RELTPLSYMEKNQQD 907

Query: 342  QTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +T+ E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +  
Sbjct: 908  KTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFN 953

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
             +     K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 954  AKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|195023643|ref|XP_001985724.1| GH20958 [Drosophila grimshawi]
 gi|193901724|gb|EDW00591.1| GH20958 [Drosophila grimshawi]
          Length = 1713

 Score =  215 bits (547), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 165/517 (31%), Positives = 251/517 (48%), Gaps = 82/517 (15%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD FLK + T++L   YP  +EG L+ ++S  VSN NL    +       +  T
Sbjct: 1200 ERFELLGDCFLKLSATLYLASKYPKWNEGTLTQVKSTLVSNRNLLYCIRDTDIPSRICFT 1259

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD- 900
             F P+  WLPP   +P+ ++    +    A+L    +L NL  +S E+V      KC + 
Sbjct: 1260 LFTPKYFWLPPCLSLPQNVQQLWQQHPDKAALVGPHNLRNLT-MSEEEVFG--NGKCAES 1316

Query: 901  -----LD-CTVD-------MNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
                 LD C  +       M+  S V +  V Q  +P+K +AD +EAL+G  +   G + 
Sbjct: 1317 TYNSFLDSCRANQQTHNAGMDFSSEVDF-CVGQVKMPNKVLADTLEALLGVIIKNYGLQH 1375

Query: 948  ALLFMSWLGLKVIPPVTNPESKHLS-----------------DVLLDGFDKFEESINYRF 990
                + + G+   P +  P ++ L                  D  L      E ++ Y F
Sbjct: 1376 GFRMLEYFGI-CKPDIGKPLTQLLDLQLGSTQLRTNITKREVDEFLINHSALEHNLGYTF 1434

Query: 991  KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            +D++YLLQA+TH S   N LT CYQ LEF+GDAILD+LI+ +++E +   +PG LTDLRS
Sbjct: 1435 RDRAYLLQALTHPSNPTNRLTGCYQELEFVGDAILDFLISAYIFEHKTRMTPGQLTDLRS 1494

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME----- 1104
            ALVNN   A + VR   H F    +  L + IQ FV+ Q  +N    NQ   LME     
Sbjct: 1495 ALVNNTTLACICVRHRIHFFILAENAMLSDSIQNFVRFQETQNHRVTNQVRILMEESDLM 1554

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              GE + + +++VPK LGD+ E++  AI
Sbjct: 1555 PGPLDSDDELEMAEADEQQASQPAITADTKKPEVGEYNISTNVDVPKTLGDVLEALIAAI 1614

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L+T W+V Y++ + E+   S +VP +PIR+L + +     +S P  + D  +V
Sbjct: 1615 YLDC-RDLNTTWQVVYKLFEPELLEFSRNVPLNPIRQLNDHKSAKPIYSAP--VTDKNQV 1671

Query: 1191 RVTVE-VFGKGSYK--GIGRNYCIAKCTAAKCALKHL 1224
             VT + +  + + K  G G N   AK +AAK AL+ +
Sbjct: 1672 MVTCQFICMEKTIKVYGFGSNGKQAKLSAAKHALQKI 1708



 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 110/500 (22%), Positives = 216/500 (43%), Gaps = 33/500 (6%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITI------SEIKEDDSIMFTCSIRLPINSPLKRSV 56
            +A+ +++RY  ++P+D F  + P   +       E+ ++    +  S+ LP+NS L+ ++
Sbjct: 565  SALMLIHRYVQQMPTDAFGTVLPWFKLLDPNERRELTQNSQGKYVVSLNLPLNSALRDTI 624

Query: 57   TGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYE-NTEPVVPKTPEI 113
                MP    A   AA +AC  L+EL EL+   +P  VT+   ++   + E        +
Sbjct: 625  YSDPMPNGHWAKISAAFKACIKLHELGELNERFLPKTVTERIADIANVHFEHWKKYGDNV 684

Query: 114  ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE 173
                   K    Y  R  S   +  P +   CY Y + ++   P  D +N     ++   
Sbjct: 685  TLRSKEAKNINTYDTRCPSELYDAMPRLGETCYAYEIILE---PQFD-RNDYTFHVYDSL 740

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI-ELIDKNVVLSEENLSNTLIFMDYLFT 232
             + +  A+L  K +P +   P+F+  G++ V + E     ++ +++ L     F   +F 
Sbjct: 741  QTRRNYALLLRKRLPLLAEMPLFSHQGKLHVRVAEQPQLMIIETQQQLDELQHFHVMIFR 800

Query: 233  KVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
             +L++ +   + D   +ENS+ +VP +S +    +DW  +         V      + + 
Sbjct: 801  DILRIWQPFFVLDRRNAENSFLVVP-MSATPGGGLDWPLVKQFCSRLPKVQATTVAQRKT 859

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT--NTYQTFEEYYSL 350
                +   F   +V  WY N ++     V ++ T++   SM   +   N+Y  F      
Sbjct: 860  MPPPNPKDFEGKIVTQWYAN-YDEKRMLVTKVHTDLTAMSMMQEKQQENSYYKFTMSKYS 918

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
             Y   I + +  L++V   + ++NF   + V    ++               L  K +L+
Sbjct: 919  NYIGDIVHKDHFLIEVRELTDQMNFYVQQRVKTSALS--------------KLRSKVMLI 964

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP-P 469
            PELC    FP  LW K + LPSIL R++ +L A+ +R  +   +G+ ++  + +   P P
Sbjct: 965  PELCFNFGFPGDLWVKLLFLPSILRRVHYMLHAEALRVRINKYLGVDQLPQNGRDYRPRP 1024

Query: 470  FNFGWKMKKLKEKYGWDTKD 489
                W +++  +  G   +D
Sbjct: 1025 LEIDWSLRRNVDHQGNAMQD 1044


>gi|80979099|gb|ABB54752.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  127 bits (318), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 208/478 (43%), Gaps = 51/478 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP----SRTNTY 341
            + ++E++     E  F   +V  WY N      +    ++T VH R + P     +    
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYAN------YDKRMLVTKVH-RELTPLSYMEKNQQD 907

Query: 342  QTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +T+ E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +  
Sbjct: 908  KTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFN 953

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
             +     K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 954  AKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|195584278|ref|XP_002081941.1| Dcr-2 [Drosophila simulans]
 gi|194193950|gb|EDX07526.1| Dcr-2 [Drosophila simulans]
          Length = 1666

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 156/497 (31%), Positives = 238/497 (47%), Gaps = 66/497 (13%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1177 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1236

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEA-GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
             F PR  W+PP   +P  +     E  GF     N +   NL++L+ +    ++K  C D
Sbjct: 1237 LFTPRYTWVPPSISLPHNVLALWREKPGFA----NMIGPHNLRDLALDDEESLVKGNCSD 1292

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL--- 957
            +     +N         V   +I +K IAD +EAL+G  +   G + A   + +  +   
Sbjct: 1293 IKYNRFVNF-------CVGLVAIANKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRS 1345

Query: 958  ---KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHAS 1004
               K +  + N E        +++   +DGF       E ++ Y FKD+ YLLQA+TH S
Sbjct: 1346 DIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKDRRYLLQALTHPS 1405

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
            Y  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + VR
Sbjct: 1406 YPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVR 1465

Query: 1065 LGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------- 1104
               H F    +  L E I +FV  Q ++     N  + L+E                   
Sbjct: 1466 HRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEADVQPTPLDLDDELELPH 1525

Query: 1105 ----------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI 1148
                            GE + + +++VPK LGD+ E++  AIYLD    L   W+V + +
Sbjct: 1526 ANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEALIAAIYLDC-RDLQRTWEVIFRL 1584

Query: 1149 MKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG-SYKGIGR 1207
             + E++  + ++P +PIR+L+E +     FS P    D   V        K     G G 
Sbjct: 1585 FEPELQEFTRNMPINPIRQLIEHKHAKPVFSSPIMEGDTLMVSCQFTCMEKSIKVYGFGS 1644

Query: 1208 NYCIAKCTAAKCALKHL 1224
            N   AK +AAK AL+ L
Sbjct: 1645 NKNQAKLSAAKHALQLL 1661



 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 125/535 (23%), Positives = 218/535 (40%), Gaps = 82/535 (15%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 583  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 642

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIET 115
            +    M    +A   AA +AC  LY L EL                 +E  +PKT +   
Sbjct: 643  IYSDPMDNARIAKISAAFKACLALYSLGEL-----------------SEKFLPKTLKERV 685

Query: 116  YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
               +    + +H                    Y   +  T    ++   R  K H P   
Sbjct: 686  AAIADVHFEHWHN-------------------YGDSVTATVNKGEKSKPRTYKTHCP--- 723

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIFMDYLFTKV 234
               L     +  P++   P+F+  G + V +      V + + E L     F   +F  +
Sbjct: 724  ---LEFYDAR--PRL-EMPLFSNQGMLHVRVADAPLEVTIQNSEQLDLLHQFHGMVFRDI 777

Query: 235  LKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
            LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +        + ++E++ 
Sbjct: 778  LKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQGSSVQQREQQP 837

Query: 294  FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
                E  F   +V  WY N        V ++   + P S F       +T+ ++   KYG
Sbjct: 838  APRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKTYYDFTMSKYG 893

Query: 354  LQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
             +I ++   ++ L++V   + +LNF    YV  +G + A +              K +L+
Sbjct: 894  NRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----------KVILI 939

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP-P 469
            PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  +  +     P P
Sbjct: 940  PELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLPFNGTDYMPKP 999

Query: 470  FNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVD 524
                + +++  +  G      N +  +D E   +  +  A   I   +A +EI +
Sbjct: 1000 LEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAALEITE 1048



 Score = 41.6 bits (96), Expect = 2.6,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 40/186 (21%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL--------- 825
            N    S + LE IGD+ L + I+ +++     ++ G L+ LRS  V+N  L         
Sbjct: 1409 NRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRL 1468

Query: 826  --FKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF---PASLWNCLSLP 880
              F L + +   E++  +KF         G+ V  Y+   L EA     P  L + L LP
Sbjct: 1469 HFFILAENEKLSETI--SKFVNFQE--SQGHRVTNYVHILLEEADVQPTPLDLDDELELP 1524

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIG 937
            +               KC+  +       Q V P   +N+ T   +P K++ D +EALI 
Sbjct: 1525 H-------------ANKCISQEAE-----QGVPPKGEFNMSTNVDVP-KTLGDVLEALIA 1565

Query: 938  AYLIEC 943
            A  ++C
Sbjct: 1566 AIYLDC 1571


>gi|449478272|ref|XP_004155270.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog 1-like
            [Cucumis sativus]
          Length = 1987

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 241/468 (51%), Gaps = 50/468 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1459 ERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLYQYALSKKLQSYIQAD 1518

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P Y E   ++ G         S  +  + + + V E+     + L
Sbjct: 1519 RFAP-SRWAAPG-VLPVYDED--MKDGES-------SFFDQDKSNSDGVSEMD----LHL 1563

Query: 902  DCTVDMNVQSV-VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
            D   D  V+   V  +  +   +  K++AD VEALIG Y +E G   A   M W+G+KV 
Sbjct: 1564 DVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHLMKWIGIKVE 1623

Query: 961  PPVTNPE----SKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                  E      +L + +L    FD  E ++N +F+D+  L++A+THAS   +    CY
Sbjct: 1624 FDAGEVECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASR-PSCGVSCY 1682

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H   +H 
Sbjct: 1683 QRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHIHLRHG 1742

Query: 1075 SPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            S  L + I+ FVK +Q E      N F L        G+C      + PK LGD+ ES+A
Sbjct: 1743 SSALEKQIRDFVKEVQDELLKPGFNSFGL--------GDC------KAPKVLGDIVESIA 1788

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG     VW+V+  ++   +     ++P  P+REL E   + A   + +    G
Sbjct: 1789 GAIFLDSGRDTAVVWRVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKATRIG 1846

Query: 1188 RRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
                 TVEVF  G   GI +N    +A+  AA+ AL  LK  +  D K
Sbjct: 1847 N--LATVEVFIDGVQIGIAQNPQKKMAQKLAARNALAVLKEKEMDDAK 1892



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  +    + FP +        Y ++ +YY  KYG+++    QPL+     S   
Sbjct: 1308 FYVDSIRYDTTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCK 1367

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+            E    E  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1368 NLLSPRF------------EHAENESEETLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1415

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  +   +   K++
Sbjct: 1416 SIMRRVESMLLAIQLKHMINYPVPASKIL 1444



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 17/138 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +V+ YC++LPSD ++ L P  + +   K      ++C ++LP N+P +  + G 
Sbjct: 920  LNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE-DLEGP 978

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMP-----VTKEFINLYENTEPVVPKTPEIE 114
               +  LA +   + AC+ L+E+    + L+P       KE +   ++ +P+        
Sbjct: 979  ICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKVEQNDDGDPL-------- 1030

Query: 115  TYPDSTKRRQFYHKRMAS 132
              P + + R+FY + +A+
Sbjct: 1031 --PGTARHREFYPEGVAN 1046



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 31/170 (18%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1441 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMV 1497

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQR---------FVKMQAENDFTL 1096
            +N++    A+      + +          +PG+  V            F + ++ +D   
Sbjct: 1498 SNMVLYQYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKSNSDGVS 1557

Query: 1097 NQEYYLMEGECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
              + +L   E  E ED EV            K L D+ E++ G  Y++ G
Sbjct: 1558 EMDLHLDVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGG 1607


>gi|449432976|ref|XP_004134274.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Cucumis sativus]
          Length = 1986

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 163/468 (34%), Positives = 241/468 (51%), Gaps = 50/468 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1458 ERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMVSNMVLYQYALSKKLQSYIQAD 1517

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P Y E   ++ G         S  +  + + + V E+     + L
Sbjct: 1518 RFAP-SRWAAPG-VLPVYDED--MKDGES-------SFFDQDKSNSDGVSEMD----LHL 1562

Query: 902  DCTVDMNVQSV-VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
            D   D  V+   V  +  +   +  K++AD VEALIG Y +E G   A   M W+G+KV 
Sbjct: 1563 DVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGGKTAANHLMKWIGIKVE 1622

Query: 961  PPVTNPE----SKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                  E      +L + +L    FD  E ++N +F+D+  L++A+THAS   +    CY
Sbjct: 1623 FDAGEVECGTRQSNLPESILRSVDFDALEGALNIKFQDRGLLVEAITHASR-PSCGVSCY 1681

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H   +H 
Sbjct: 1682 QRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHNLHIHLRHG 1741

Query: 1075 SPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            S  L + I+ FVK +Q E      N F L        G+C      + PK LGD+ ES+A
Sbjct: 1742 SSALEKQIRDFVKEVQDELLKPGFNSFGL--------GDC------KAPKVLGDIVESIA 1787

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG     VW+V+  ++   +     ++P  P+REL E   + A   + +    G
Sbjct: 1788 GAIFLDSGRDTAVVWRVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKATRIG 1845

Query: 1188 RRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
                 TVEVF  G   GI +N    +A+  AA+ AL  LK  +  D K
Sbjct: 1846 N--LATVEVFIDGVQIGIAQNPQKKMAQKLAARNALAVLKEKEMDDAK 1891



 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 72/149 (48%), Gaps = 19/149 (12%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  +    + FP +        Y ++ +YY  KYG+++    QPL+     S   
Sbjct: 1307 FYVDSIRYDTTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYKHQPLIRGRGVSYCK 1366

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+            E    E  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1367 NLLSPRF------------EHAENESEETLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1414

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  +   +   K++
Sbjct: 1415 SIMRRVESMLLAIQLKHMINYPVPASKIL 1443



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/138 (23%), Positives = 71/138 (51%), Gaps = 17/138 (12%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +V+ YC++LPSD ++ L P  + +   K      ++C ++LP N+P +  + G 
Sbjct: 919  LNSAVGLVHFYCSQLPSDRYSILRPEFVMVRHEKPGGPTEYSCKLQLPCNAPFE-DLEGP 977

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMP-----VTKEFINLYENTEPVVPKTPEIE 114
               +  LA +   + AC+ L+E+    + L+P       KE +   ++ +P+        
Sbjct: 978  ICSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGEEKEKVEQNDDGDPL-------- 1029

Query: 115  TYPDSTKRRQFYHKRMAS 132
              P + + R+FY + +A+
Sbjct: 1030 --PGTARHREFYPEGVAN 1045



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 44/170 (25%), Positives = 74/170 (43%), Gaps = 31/170 (18%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1440 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPRKHEGQLTRMRQQMV 1496

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQR---------FVKMQAENDFTL 1096
            +N++    A+      + +          +PG+  V            F + ++ +D   
Sbjct: 1497 SNMVLYQYALSKKLQSYIQADRFAPSRWAAPGVLPVYDEDMKDGESSFFDQDKSNSDGVS 1556

Query: 1097 NQEYYLMEGECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
              + +L   E  E ED EV            K L D+ E++ G  Y++ G
Sbjct: 1557 EMDLHLDVFEDGEVEDREVESDSSSYRVLSSKTLADVVEALIGVYYVEGG 1606


>gi|357114316|ref|XP_003558946.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Brachypodium
            distachyon]
          Length = 1888

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 159/469 (33%), Positives = 235/469 (50%), Gaps = 55/469 (11%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1357 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALNKTLQSYIQAD 1416

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P + E                S P++     E VL    QK  D 
Sbjct: 1417 RFAP-SRWAAPG-VLPVFDEETR------------ESEPSI--FGEEPVLGNEVQKDFDD 1460

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            D    +     +  +      +  K++AD VEALIG Y +  G   A   M W+G+    
Sbjct: 1461 DYADSIQEDGEIDGDSGCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAEL 1520

Query: 960  ----IPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                IPP   P+  ++ D ++    FD  E  +  +F++K +L++A+THAS   + ++ C
Sbjct: 1521 DPQEIPP---PKIYNIPDSIMRSINFDTLESIMGIKFQNKGFLVEAITHASRPSSGVS-C 1576

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEF+GDA+LD+LIT+HL+       PG LTDLR+A VNN  FA +AV+   H   +H
Sbjct: 1577 YQRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRH 1636

Query: 1074 LSPGLHEVIQRFVKMQAE-------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESV 1126
             S  L   I+ FVK   E       N F L        G+C      + PK LGD+ ES+
Sbjct: 1637 GSSALETQIREFVKDVREEISKSGFNSFGL--------GDC------KAPKVLGDIIESI 1682

Query: 1127 AGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLAD 1186
            AGAI+LDSG     VWKV+  ++   +     ++P  PIREL E   + A   + +    
Sbjct: 1683 AGAIFLDSGYDTSAVWKVFQPLLDPMV--TPETLPMHPIRELQERCQQQAEGLEYKASRA 1740

Query: 1187 GRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
            G     TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A+ K
Sbjct: 1741 GN--VATVEVFVDGIQIGVAQNPQKKMAQKLAARNALVVLKEKESAEAK 1787



 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 43/137 (31%), Positives = 74/137 (54%), Gaps = 17/137 (12%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  N++  + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1202 FYVDSICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELVYTKQPLIRARGVSYCK 1261

Query: 374  NFLTPRYVN---RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSL 430
            N L+PR+ +   ++G+N +   ++T             L PELC++HP P SL R +  L
Sbjct: 1262 NLLSPRFEHSEAKEGVNFSENHDKTYY---------VYLPPELCVVHPLPGSLVRGAQRL 1312

Query: 431  PSILYRLNALLLADEIR 447
            PSI+ R+ ++LLA +++
Sbjct: 1313 PSIMRRVESMLLAVQLK 1329



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/160 (25%), Positives = 78/160 (48%), Gaps = 17/160 (10%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P  I     K   S+ ++C ++LP N+P ++ + G 
Sbjct: 817 LNSAVGLIHFYCSQLPSDRYSILRPEFIMQKHEKPGGSVEYSCKLQLPCNAPFEK-LEGP 875

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P     I   E TE    +  E +  P +
Sbjct: 876 ICSSIRLAQQAVCLAACKKLHEMSAFTDMLLP--DRGIGEGEKTE----QNDEGDPVPGT 929

Query: 120 TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAV 150
            + R+FY + +A              C+ S     Y+Y V
Sbjct: 930 ARHREFYPEGVAEVLRGEWILSGRDCCQSSQFIKLYMYYV 969



 Score = 45.4 bits (106), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 1341 ILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1397

Query: 1056 IIFASLAV 1063
            ++    A+
Sbjct: 1398 MVLYQFAL 1405


>gi|80979093|gb|ABB54749.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 120/474 (25%), Positives = 206/474 (43%), Gaps = 43/474 (9%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVAAIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKYRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            + ++E++     E  F   +V  WY N        V ++   + P S +  +    +T+ 
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYANY--DKRMLVTKVHRELTPLS-YMEKNQQDKTYY 911

Query: 346  EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 912  EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 957

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 958  AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|80979085|gb|ABB54745.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (546), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  127 bits (320), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 121/477 (25%), Positives = 207/477 (43%), Gaps = 49/477 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVAAIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSM---FPSRTNTYQ 342
            + ++E++     E  F   +V  WY N      +    ++T VH R     +  +    +
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYAN------YDKRMLVTKVHRRLTPLSYMEKNQQDK 908

Query: 343  TFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            T+ E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   
Sbjct: 909  TYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNA 954

Query: 400  RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
            +     K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 955  KSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|80979089|gb|ABB54747.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDVNYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  126 bits (317), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 208/478 (43%), Gaps = 51/478 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP----SRTNTY 341
            + ++E++     E  F   +V  WY N      +    ++T VH R + P     +    
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYAN------YDKRMLVTKVH-RELTPLSYMEKNQQD 907

Query: 342  QTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +T+ E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +  
Sbjct: 908  KTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFN 953

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
             +     K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 954  AKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|80979097|gb|ABB54751.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (545), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKI---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHSYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 122/478 (25%), Positives = 208/478 (43%), Gaps = 51/478 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVAAIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP----SRTNTY 341
            + ++E++     E  F   +V  WY N      +    ++T VH R + P     +    
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYAN------YDKRMLVTKVH-RELTPLSYMEKNQQD 907

Query: 342  QTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +T+ E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +  
Sbjct: 908  KTYYEFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFN 953

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
             +     K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 954  AKSKAKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|80979095|gb|ABB54750.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  214 bits (544), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 172/569 (30%), Positives = 268/569 (47%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKM---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF--DKF--EESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF  + F  E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHFYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  129 bits (325), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 43/474 (9%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHPSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            + ++E++     E  F   +V  WY N  +P    V ++   + P S +  +    +T+ 
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 911

Query: 346  EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 912  EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 957

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 958  AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|87240866|gb|ABD32724.1| Helicase, C-terminal; Argonaute and Dicer protein, PAZ; Ribonuclease
            III, bacterial [Medicago truncatula]
          Length = 1939

 Score =  213 bits (543), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 226/443 (51%), Gaps = 55/443 (12%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  +P  HEG+L+ +R + VSN  L++    K     ++A 
Sbjct: 1415 ERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYILAD 1474

Query: 842  KFEPRDNWLPPGYFV-----PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            +F P   W  PG         K  E++L +     S++    + N  E   E        
Sbjct: 1475 RFAP-SRWAAPGVLPVFDEDTKDEESSLFDQ--ERSIFKAERMDNTDEFEDE-------- 1523

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
               D +   D +   V          +  K++AD VEALIG Y +E G   A   M W+G
Sbjct: 1524 -MEDGELESDSSSYRV----------LSSKTLADVVEALIGVYYVEGGKNAANHLMKWIG 1572

Query: 957  LKV-IPP-----VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            + + I P     +T P +   S +    FD  E ++N +FKDK  L++++THAS   + +
Sbjct: 1573 IHIEIDPDEMECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGV 1632

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            + CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA + V+   H  
Sbjct: 1633 S-CYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLH 1691

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L + I+ FVK + +++ +         G+C      + PK LGD+ ES+AGAI
Sbjct: 1692 LRHGSSALEKQIKDFVK-EVQDELSKPGFNSFGLGDC------KAPKVLGDILESIAGAI 1744

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFSKPEKLA 1185
            +LDSG +   VWKV+  ++   +     ++P  P+REL E   + A     R S+   LA
Sbjct: 1745 FLDSGRNTAVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYRASRAGNLA 1802

Query: 1186 DGRRVRVTVEVFGKGSYKGIGRN 1208
                   TVEVF  G   G  +N
Sbjct: 1803 -------TVEVFIDGVQVGAAQN 1818



 Score = 60.8 bits (146), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 37/110 (33%), Positives = 59/110 (53%), Gaps = 7/110 (6%)

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
            ++YG+ +   +QPL+     S   N L+PR+ + +G    T  EET  +          L
Sbjct: 1291 IRYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDET--EETHDKTYYVF-----L 1343

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
             PELCL+HP P SL R +  LPSI+ R+ ++LLA +++  +   +   KV
Sbjct: 1344 PPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKV 1393



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 54/206 (26%), Positives = 93/206 (45%), Gaps = 38/206 (18%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 1399 ILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSN 1455

Query: 1056 IIFASLAVRLGFHHFF--------KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
            ++    A+  G   +         +  +PG+  V     K +  + F  +QE  + + E 
Sbjct: 1456 MVLYRYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESSLF--DQERSIFKAER 1513

Query: 1108 --------DEAEDIEV-----------PKALGDLFESVAGAIYLDSGMSLDT---VW-KV 1144
                    DE ED E+            K L D+ E++ G  Y++ G +       W  +
Sbjct: 1514 MDNTDEFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGI 1573

Query: 1145 YYEIMKSEIERLS--VSVPKSPIREL 1168
            + EI   E+E ++   +VP S +R +
Sbjct: 1574 HIEIDPDEMECITKPSNVPDSILRSV 1599



 Score = 47.0 bits (110), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 21/162 (12%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDS--IMFTCSIRLPINSPLKRSVTG 58
           +++A+ +V+ YC++LPSD ++ L P   I E  E+      ++C ++LP N+P + ++ G
Sbjct: 813 LNSAVGLVHFYCSQLPSDRYSILRPEF-IMEKHENSGGPTEYSCRLQLPCNAPFE-NLEG 870

Query: 59  HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPD 118
               +  LA + +   ACR L+E+    + L+P  K      E  E    +  E +  P 
Sbjct: 871 PICSSIRLAQQAS---ACRKLHEMGAFTDMLLP-DKGSGEEKEKAE----QNDEGDALPG 922

Query: 119 STKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
           + + R+FY + +A              C  S     Y+Y +K
Sbjct: 923 TARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYTIK 964


>gi|357512663|ref|XP_003626620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355501635|gb|AES82838.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 1965

 Score =  213 bits (543), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 149/443 (33%), Positives = 226/443 (51%), Gaps = 55/443 (12%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  +P  HEG+L+ +R + VSN  L++    K     ++A 
Sbjct: 1441 ERAELLGDAYLKWVVSRFLFLKHPQKHEGQLTRMRQQMVSNMVLYRYALSKGLQSYILAD 1500

Query: 842  KFEPRDNWLPPGYFV-----PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            +F P   W  PG         K  E++L +     S++    + N  E   E        
Sbjct: 1501 RFAP-SRWAAPGVLPVFDEDTKDEESSLFDQ--ERSIFKAERMDNTDEFEDE-------- 1549

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
               D +   D +   V          +  K++AD VEALIG Y +E G   A   M W+G
Sbjct: 1550 -MEDGELESDSSSYRV----------LSSKTLADVVEALIGVYYVEGGKNAANHLMKWIG 1598

Query: 957  LKV-IPP-----VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            + + I P     +T P +   S +    FD  E ++N +FKDK  L++++THAS   + +
Sbjct: 1599 IHIEIDPDEMECITKPSNVPDSILRSVDFDALEGALNIKFKDKGLLIESITHASRPSSGV 1658

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            + CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA + V+   H  
Sbjct: 1659 S-CYQRLEFVGDAVLDHLITRHLFFSYTDLPPGRLTDLRAAAVNNENFARVTVKHNLHLH 1717

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L + I+ FVK + +++ +         G+C      + PK LGD+ ES+AGAI
Sbjct: 1718 LRHGSSALEKQIKDFVK-EVQDELSKPGFNSFGLGDC------KAPKVLGDILESIAGAI 1770

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFSKPEKLA 1185
            +LDSG +   VWKV+  ++   +     ++P  P+REL E   + A     R S+   LA
Sbjct: 1771 FLDSGRNTAVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYRASRAGNLA 1828

Query: 1186 DGRRVRVTVEVFGKGSYKGIGRN 1208
                   TVEVF  G   G  +N
Sbjct: 1829 -------TVEVFIDGVQVGAAQN 1844



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 36/111 (32%), Positives = 60/111 (54%), Gaps = 7/111 (6%)

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLL 409
            ++YG+ +   +QPL+     S   N L+PR+ + +G    T  EET  +          L
Sbjct: 1323 IRYGVDLAYKQQPLIRGRGVSYCKNLLSPRFEHSEGHEDET--EETHDKTYYVF-----L 1375

Query: 410  VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
             PELCL+HP P SL R +  LPSI+ R+ ++LLA +++  +   +   K++
Sbjct: 1376 PPELCLVHPLPGSLVRGAQRLPSIMRRVESMLLAVQLKNMINYPVQASKIL 1426



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/221 (26%), Positives = 100/221 (45%), Gaps = 39/221 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + +  INY  +  S +L+A+T AS      T CY+R E LGDA L ++++R L+      
Sbjct: 1411 QLKNMINYPVQ-ASKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKHPQK 1466

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFF--------KHLSPGLHEVIQRFVKMQAEN 1092
              G LT +R  +V+N++    A+  G   +         +  +PG+  V     K +  +
Sbjct: 1467 HEGQLTRMRQQMVSNMVLYRYALSKGLQSYILADRFAPSRWAAPGVLPVFDEDTKDEESS 1526

Query: 1093 DFTLNQEYYLMEGEC--------DEAEDIEV-----------PKALGDLFESVAGAIYLD 1133
             F  +QE  + + E         DE ED E+            K L D+ E++ G  Y++
Sbjct: 1527 LF--DQERSIFKAERMDNTDEFEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVE 1584

Query: 1134 SGMSLDT---VW-KVYYEIMKSEIERLS--VSVPKSPIREL 1168
             G +       W  ++ EI   E+E ++   +VP S +R +
Sbjct: 1585 GGKNAANHLMKWIGIHIEIDPDEMECITKPSNVPDSILRSV 1625



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 77/162 (47%), Gaps = 18/162 (11%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDS--IMFTCSIRLPINSPLKRSVTG 58
           +++A+ +V+ YC++LPSD ++ L P   I E  E+      ++C ++LP N+P + ++ G
Sbjct: 813 LNSAVGLVHFYCSQLPSDRYSILRPEF-IMEKHENSGGPTEYSCRLQLPCNAPFE-NLEG 870

Query: 59  HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPD 118
               +  LA +   + ACR L+E+    + L+P  K      E  E    +  E +  P 
Sbjct: 871 PICSSIRLAQQAVCLAACRKLHEMGAFTDMLLP-DKGSGEEKEKAE----QNDEGDALPG 925

Query: 119 STKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
           + + R+FY + +A              C  S     Y+Y +K
Sbjct: 926 TARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYTIK 967


>gi|80979087|gb|ABB54746.1| Dicer-2 [Drosophila melanogaster]
          Length = 1715

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1170 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1216

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1217 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1276

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1277 LPHNVLALWRENPEFAKI---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1333

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1334 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1390

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1391 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHP 1450

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1451 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1510

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1511 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1570

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1571 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1629

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1630 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1687

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1688 VYGFGSNKD------QAKLSAAKHALQQL 1710



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 43/474 (9%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 562  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 621

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 622  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 681

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 682  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 735

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 736  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 795

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 796  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 855

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            + ++E++     E  F   +V  WY N  +P    V ++   + P S +  +    +T+ 
Sbjct: 856  VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 911

Query: 346  EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 912  EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 957

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 958  AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1011


>gi|340373457|ref|XP_003385258.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
          Length = 1520

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 168/549 (30%), Positives = 244/549 (44%), Gaps = 139/549 (25%)

Query: 773  LENHTGPSPK------RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
            L++ TG S K      RLET+GDSFLK A+++ L+C     HEGKL+  R  ++SN+NL 
Sbjct: 1003 LQSLTGTSAKDSFDLERLETLGDSFLKLAVSVSLFCGRGKDHEGKLTRSRINRISNFNLS 1062

Query: 827  KLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS 886
             L K+K     +   +FEP   W+PPG+ +        +++  P  +             
Sbjct: 1063 FLAKKKGLPGLLQTEQFEPLSGWIPPGFSLS-------LDSALPDHV------------- 1102

Query: 887  PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
            P   L  + QK                       H + DK IAD  EAL+GAYLI  G  
Sbjct: 1103 PPNTLPAVIQK--------------------YYYHKVTDKGIADSTEALLGAYLIAGGLG 1142

Query: 947  GALLFM--------------------------------SWLGLKVIPPVTNP----ESKH 970
                F+                                S + ++   P  NP     S H
Sbjct: 1143 AGFSFLDWLGLQKPTESSSFSQDVTMSSCNVSRKQSQSSLMSIEEASPCINPILLQNSTH 1202

Query: 971  L-----------------SDVLLD----------GFDKFEESINYRFKDKSYLLQAMTHA 1003
            +                  D  +D          G     + +++ F D++ LLQA+TH 
Sbjct: 1203 VFSSCCLPPPPSLLDSSAPDTTIDKLLSSAVPGGGRSSLYDKLSWDFSDRALLLQALTHP 1262

Query: 1004 SYF-LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            SY   N +T  YQRLEFLGDA+LDYLIT  LY +  +++PG +T+ RSALVNN+ FA +A
Sbjct: 1263 SYSNKNRVTRSYQRLEFLGDAVLDYLITCCLYTEFPSYTPGQITETRSALVNNVTFAEIA 1322

Query: 1063 V-RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL---------------MEGE 1106
            V +L  H +  +LSP L   I  +V+   E++     E  L               M G+
Sbjct: 1323 VKKLSLHTYLLYLSPSLFRKITEYVEFLQEDERESGSEKELIYCRFGDQSENVHEEMNGD 1382

Query: 1107 C--------DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS- 1157
                      +  ++E PK LGD+ ES+AGA++LDSGMSL+TVW  +Y   +  IE    
Sbjct: 1383 IAMLEEEEEADITELEPPKVLGDVLESLAGALFLDSGMSLETVWSYFYPFFRPLIESFKE 1442

Query: 1158 VSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG-SYKGIGRNYCIAKCTA 1216
               P  PI+EL+  EP         + +   + R T++V  K      I  +Y  AK  A
Sbjct: 1443 KGPPVHPIQELMRTEPSVEIMQSSTRRS---KHRCTIKVIDKDIQVSCIAESYKTAKNGA 1499

Query: 1217 AKCALKHLK 1225
            AK  ++ +K
Sbjct: 1500 AKRVIRKIK 1508



 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/295 (28%), Positives = 133/295 (45%), Gaps = 33/295 (11%)

Query: 179 LAILTTKYIP--KVCSFPIFTRCGEVEVSIE--LIDKNVVLSEENLSNTLIFMDYLFTKV 234
           L ILT+K IP  K+  FP+F     + VS E  L D  +    + L     F + +FT +
Sbjct: 660 LGILTSKRIPVTKIPQFPLFAGHSTINVSFEEHLFDATI----QELEVLKKFHEIIFTDI 715

Query: 235 LKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENF 294
           + +K   +      S++SY IVP      Q+    +    I    N +I     ++ E+ 
Sbjct: 716 ISIKGEDLKLSFETSDSSYLIVPVTV--YQLGCPLQCFVDIETAKNMIIAAERGRKAEDL 773

Query: 295 VFDESKFR--DAVVMPWYRNQFEPTYFYVAEIMT---NVHPRSMFPSRTNTYQTFEEYYS 349
                 F   D +V   Y  +     F + E+++      P S+FP  +   +++ EY+ 
Sbjct: 774 ASPTWPFDWPDKLVFKSYVEETSHDQFQLYEVLSYNPEETPLSLFPGEST--KSYFEYFL 831

Query: 350 LKYGLQIQNLEQPLLDVDHTSCRLN---FLTPRY--VNRKGINLATTSEETRR--EIRES 402
            KYG  I  +  P L     S  +N    L  R+   NR   + A   E ++R  EIR  
Sbjct: 832 NKYGYSIVYICDPSLTCKPVSMGVNGVRLLVSRFKDTNRSSAS-APDDESSQRSSEIR-- 888

Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
                 L PELC + P PAS W+    +PSI++RL   LLA+E+  +++S  G+G
Sbjct: 889 ------LFPELCKVWPIPASFWKLCRCVPSIIHRLVGFLLAEELAQSISSFTGIG 937



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 32/111 (28%), Positives = 60/111 (54%), Gaps = 14/111 (12%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSI----------MFTCSIRLPINS 50
           +D+++ +++RYC +LP D +T +AP   +  +  DD+I          +F C++ LP  S
Sbjct: 542 IDSSLSLLHRYCQKLPGDQYTVMAPDFKLEPV--DDAICQLDGRRYETLFMCTVYLPTCS 599

Query: 51  PLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMP-VTKEFINLY 100
           P+ RS  G  +P   LA + AA  A + L+++     +  P + K F+ ++
Sbjct: 600 PV-RSAQGIAVPRVNLARQSAAFIAIQDLHKVPSCLKESFPYIGKNFLYVF 649


>gi|334283448|gb|AAR82738.2| SD11113p [Drosophila melanogaster]
          Length = 1701

 Score =  213 bits (542), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 171/569 (30%), Positives = 266/569 (46%), Gaps = 108/569 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1156 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1202

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1203 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1262

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    A +   +   NL++L+      ++K  C D++             
Sbjct: 1263 LPHNVLALWRENPEFAKI---IGPHNLRDLALGDEESLVKGNCSDINYNRFVEGCRANGQ 1319

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   IP+K IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1320 SFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICR 1376

Query: 958  ----KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
                K +  + N E        +++   +DGF       E+++ Y FKD+ YLLQA+TH 
Sbjct: 1377 ADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHP 1436

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1437 SYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1496

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E+I +FV  Q ++     N    L+E                  
Sbjct: 1497 RHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDLDDELDMT 1556

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                GE + + +++VPKALGD+ E++  A+YLD    L   W+V
Sbjct: 1557 ELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEV 1615

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + + E++  +  VP + IR+L+E +     FS P  + +G  V V         T++
Sbjct: 1616 IFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIK 1673

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V+G GS K        AK +AAK AL+ L
Sbjct: 1674 VYGFGSNKD------QAKLSAAKHALQQL 1696



 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 43/474 (9%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
           +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 548 NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 607

Query: 55  SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
           ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 608 TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 667

Query: 109 KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                    D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 668 SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 721

Query: 168 KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
            ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 722 HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 781

Query: 227 MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
              +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 782 HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 841

Query: 286 IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
           + ++E++     E  F   +V  WY N  +P    V ++   + P S +  +    +T+ 
Sbjct: 842 VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 897

Query: 346 EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
           E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 898 EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 943

Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
              K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 944 AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 997


>gi|225453660|ref|XP_002268369.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Vitis vinifera]
          Length = 1971

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 157/465 (33%), Positives = 237/465 (50%), Gaps = 44/465 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1443 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQSALCKGLQSYIQAD 1502

Query: 842  KFEPRDNWLPPGYFV-----PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            +F P   W  PG         K  E++L +   P S           E +P         
Sbjct: 1503 RFAP-SRWAAPGVLPVFDEDTKETESSLFDHERPFS-----------ETAPGNDRH---G 1547

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
               D D   D  ++S    +  +   +  K++AD VEALIG Y +E G   A   M W+G
Sbjct: 1548 DGYDDDEMEDGELES----DSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIG 1603

Query: 957  LKV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            ++V      I   T P +   S +    FD  E ++N +F ++  L++A+THAS   + +
Sbjct: 1604 IQVEFDPEDIVCATGPCNVPESILRSVNFDTLEGALNIKFNNRGLLIEAITHASRPSSGV 1663

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            + CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H  
Sbjct: 1664 S-CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHIH 1722

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L + I+ FVK + +++ +         G+C      + PK LGD+ ES+AGAI
Sbjct: 1723 LRHGSSALEKQIRDFVK-EVQDELSKPGFNSFGLGDC------KAPKVLGDIVESIAGAI 1775

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG     VWKV+  ++   +     ++P  P+REL E   + A   + +    G   
Sbjct: 1776 FLDSGRDTAVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKATRSGN-- 1831

Query: 1191 RVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
              TVEVF  G   GI +N    +A+  AA+ AL  LK  + A+ K
Sbjct: 1832 LATVEVFIDGVQIGIAQNPQKKMAQKLAARNALVVLKERETAEAK 1876



 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 75/149 (50%), Gaps = 19/149 (12%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  +  ++   + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1292 FYVDSVRYDMTAENSFPRKEGYLGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCK 1351

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ + +G            E  E+L K     L PELC +HP P SL R +  LP
Sbjct: 1352 NLLSPRFEHSEG------------ESDETLDKTYYVFLPPELCFVHPLPGSLVRSAQRLP 1399

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  +   +   K++
Sbjct: 1400 SIMRRVESMLLAVQLKDVINYPVPAAKIL 1428



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N+P ++ + G 
Sbjct: 904  LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEK-LEGP 962

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               +  LA +   + AC+ L+E+    + L+P         E  E  V +  E +  P +
Sbjct: 963  VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG----EEGEK-VDQNDEGDPLPGT 1017

Query: 120  TKRRQFYHKRMASCFT---------NCRPSVNTPCYLYAVK 151
             + R+FY + +A+             C  S     Y+YAVK
Sbjct: 1018 ARHREFYPEGVANVLQGEWILLGKDGCNSSRLVHLYMYAVK 1058



 Score = 47.8 bits (112), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 78/183 (42%), Gaps = 32/183 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + ++ INY     + +L+A+T AS      T CY+R E LGDA L ++++R L+      
Sbjct: 1413 QLKDVINYPVP-AAKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1468

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFF--------KHLSPGLHEVIQRFVK----- 1087
              G LT +R  +V+N++    A+  G   +         +  +PG+  V     K     
Sbjct: 1469 HEGQLTRMRQQMVSNMVLYQSALCKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKETESS 1528

Query: 1088 -MQAENDFTLNQEYYLMEGEC---DEAEDIEV-----------PKALGDLFESVAGAIYL 1132
                E  F+         G+    DE ED E+            K L D+ E++ G  Y+
Sbjct: 1529 LFDHERPFSETAPGNDRHGDGYDDDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYV 1588

Query: 1133 DSG 1135
            + G
Sbjct: 1589 EGG 1591


>gi|22026807|ref|NP_523778.2| Dicer-2 [Drosophila melanogaster]
 gi|21627058|gb|AAF57830.2| Dicer-2 [Drosophila melanogaster]
 gi|342672109|gb|AEL30809.1| FI15132p1 [Drosophila melanogaster]
          Length = 1722

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 171/576 (29%), Positives = 266/576 (46%), Gaps = 122/576 (21%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1177 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1223

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1224 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1283

Query: 856  VPKYLETALIEAGFPASLWN-------CLSLPNLKELSPEKVLEIIKQKCVDLD------ 902
            +P  +           +LW         +   NL++L+      ++K  C D++      
Sbjct: 1284 LPHNV----------LALWRENPEFAKIIGPHNLRDLALGDEESLVKGNCSDINYNRFVE 1333

Query: 903  ----------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                         D + +      LVT   IP+K IAD +EAL+G  +   G + A   +
Sbjct: 1334 GCRANGQSFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGLQHAFKML 1390

Query: 953  SWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYL 996
             +  +      K +  + N E        +++   +DGF       E+++ Y FKD+ YL
Sbjct: 1391 EYFKICRADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYL 1450

Query: 997  LQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056
            LQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN 
Sbjct: 1451 LQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNT 1510

Query: 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME----------- 1104
              A + VR   H F    +  L E+I +FV  Q ++     N    L+E           
Sbjct: 1511 TLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPLDL 1570

Query: 1105 ---------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
                                       GE + + +++VPKALGD+ E++  A+YLD    
Sbjct: 1571 DDELDMTELPHANKCISQEAEKGVPPKGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RD 1629

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV----- 1192
            L   W+V + + + E++  +  VP + IR+L+E +     FS P  + +G  V V     
Sbjct: 1630 LQRTWEVIFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFT 1687

Query: 1193 ----TVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
                T++V+G GS K        AK +AAK AL+ L
Sbjct: 1688 CMEKTIKVYGFGSNKD------QAKLSAAKHALQQL 1717



 Score =  129 bits (325), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 43/474 (9%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 569  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 628

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 629  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 688

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 689  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 742

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 743  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 802

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 803  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 862

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            + ++E++     E  F   +V  WY N  +P    V ++   + P S +  +    +T+ 
Sbjct: 863  VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 918

Query: 346  EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 919  EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 964

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 965  AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1018


>gi|374259482|gb|AEZ02177.1| Dicer [Arabidopsis thaliana]
          Length = 1886

 Score =  213 bits (542), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1352 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1411

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1412 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1464

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1465 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 1512

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ Y FK+K  L++A+THAS   + ++
Sbjct: 1513 DPDEVDGTLKNVNVPESVLKS---ID-FVGLERALKYEFKEKGLLVEAITHASRPSSGVS 1568

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1569 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1627

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 1628 RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 1679

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 1680 FLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 1735

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 1736 TATVEVFIDGVQVGVAQN 1753



 Score = 70.9 bits (172), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y T+ +YY  KYG+ +   +QPL+     S   
Sbjct: 1202 FYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCK 1261

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+             E   E    L K     L PELC++HP   SL R +  LP
Sbjct: 1262 NLLSPRF-------------EQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLP 1308

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1309 SIMRRVESMLLAVQLKNLISYPIPTSKIL 1337



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1334 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1390

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1391 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1450

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1451 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1495



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 837 LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 895

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P      +  +       +  E E  P +
Sbjct: 896 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEK-----ADQDDEGEPVPGT 950

Query: 120 TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
            + R+FY + +A              C  S     Y+Y V+
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVR 991


>gi|15223286|ref|NP_171612.1| endoribonuclease Dicer [Arabidopsis thaliana]
 gi|34922211|sp|Q9SP32.2|DCL1_ARATH RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=AtDCL1; AltName:
            Full=Protein ABNORMAL SUSPENSOR 1; AltName: Full=Protein
            CARPEL FACTORY; AltName: Full=Protein SHORT INTEGUMENTS
            1; AltName: Full=Protein SUSPENSOR 1
 gi|11559645|gb|AAG38019.1|AF292940_1 short integuments 1 [Arabidopsis thaliana]
 gi|11559647|gb|AAG38020.1|AF292941_1 short integuments 1 [Arabidopsis thaliana]
 gi|332189099|gb|AEE27220.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1909

 Score =  213 bits (541), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1375 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1434

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1435 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1487

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1488 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 1535

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ Y FK+K  L++A+THAS   + ++
Sbjct: 1536 DPDEVDGTLKNVNVPESVLKS---ID-FVGLERALKYEFKEKGLLVEAITHASRPSSGVS 1591

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1592 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1650

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 1651 RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 1702

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 1703 FLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 1758

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 1759 TATVEVFIDGVQVGVAQN 1776



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y T+ +YY  KYG+ +   +QPL+     S   
Sbjct: 1225 FYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCK 1284

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+             E   E    L K     L PELC++HP   SL R +  LP
Sbjct: 1285 NLLSPRF-------------EQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLP 1331

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1332 SIMRRVESMLLAVQLKNLISYPIPTSKIL 1360



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1357 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1413

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1414 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1473

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1474 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1518



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 837 LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 895

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P      +  +       +  E E  P +
Sbjct: 896 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEK-----ADQDDEGEPVPGT 950

Query: 120 TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
            + R+FY + +A              C  S     Y+Y V+
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVR 991


>gi|334182203|ref|NP_001184881.1| endoribonuclease Dicer [Arabidopsis thaliana]
 gi|332189100|gb|AEE27221.1| endoribonuclease Dicer [Arabidopsis thaliana]
          Length = 1910

 Score =  213 bits (541), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1376 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1435

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1436 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1488

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1489 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 1536

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ Y FK+K  L++A+THAS   + ++
Sbjct: 1537 DPDEVDGTLKNVNVPESVLKS---ID-FVGLERALKYEFKEKGLLVEAITHASRPSSGVS 1592

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1593 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1651

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 1652 RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 1703

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 1704 FLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 1759

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 1760 TATVEVFIDGVQVGVAQN 1777



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y T+ +YY  KYG+ +   +QPL+     S   
Sbjct: 1226 FYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCK 1285

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+             E   E    L K     L PELC++HP   SL R +  LP
Sbjct: 1286 NLLSPRF-------------EQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLP 1332

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1333 SIMRRVESMLLAVQLKNLISYPIPTSKIL 1361



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1358 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1414

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1415 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1474

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1475 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1519



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 73/161 (45%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 837 LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 895

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P      +  +       +  E E  P +
Sbjct: 896 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEK-----ADQDDEGEPVPGT 950

Query: 120 TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
            + R+FY + +A              C  S     Y+Y V+
Sbjct: 951 ARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVR 991


>gi|6102610|gb|AAF03534.1|AF187317_1 CAF protein [Arabidopsis thaliana]
          Length = 1909

 Score =  213 bits (541), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1375 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1434

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1435 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1487

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1488 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 1535

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ Y FK+K  L++A+THAS   + ++
Sbjct: 1536 DPDEVDGTLKNVNVPESVLKS---ID-FVGLERALKYEFKEKGLLVEAITHASRPSSGVS 1591

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1592 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1650

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 1651 RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 1702

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 1703 FLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 1758

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 1759 TATVEVFIDGVQVGVAQN 1776



 Score = 70.9 bits (172), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 71/149 (47%), Gaps = 20/149 (13%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y T+ +YY  KYG+ +   +QPL+     S   
Sbjct: 1225 FYVDSICYDMSAETSFPRKEGYLGPLEYNTYADYYKQKYGVDLNCKQQPLIKGRGVSYCK 1284

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+             E   E    L K     L PELC++HP   SL R +  LP
Sbjct: 1285 NLLSPRF-------------EQSGESETVLDKTYYVFLPPELCVVHPLSGSLIRGAQRLP 1331

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1332 SIMRRVESMLLAVQLKNLISYPIPTSKIL 1360



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1357 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1413

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1414 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1473

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1474 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1518



 Score = 48.5 bits (114), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 31/132 (23%), Positives = 66/132 (50%), Gaps = 7/132 (5%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 837 LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 895

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P      +  +       +  E E  P +
Sbjct: 896 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSGQDAEK-----ADQDDEGEPVPGT 950

Query: 120 TKRRQFYHKRMA 131
            + R+FY + +A
Sbjct: 951 ARHREFYPEGVA 962


>gi|356571277|ref|XP_003553805.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
          Length = 1942

 Score =  212 bits (540), Expect = 9e-52,   Method: Compositional matrix adjust.
 Identities = 149/442 (33%), Positives = 231/442 (52%), Gaps = 52/442 (11%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1418 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQAD 1477

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P + E         +SL++            E+ +  I++    +
Sbjct: 1478 RFAP-SRWAAPG-VLPVFDEDT---KDGESSLFD-----------QERSISKIER----M 1517

Query: 902  DCTVDMNVQSVVPYNLVTQHS----IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            DC  D     +    L +  S    +  K++AD VEALIG Y +E G   A   M W+G+
Sbjct: 1518 DCHTDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWMGI 1577

Query: 958  KV--IPPVTNPESK--HLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
            ++   P   +   K  ++ D +L    FD  E ++N +FKD+  L++++THAS   + ++
Sbjct: 1578 QIEFDPDTMDCTRKPFNVPDSILRSVDFDALEGALNMKFKDRGLLVESITHASRPSSGVS 1637

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H   
Sbjct: 1638 -CYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHL 1696

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +H S  L + I+ FVK + +++ +         G+C      + PK LGD+ ES+AGAI+
Sbjct: 1697 RHGSSALEKQIKEFVK-EVQDELSKPGFNSFGLGDC------KAPKVLGDILESIAGAIF 1749

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFSKPEKLAD 1186
            LDSG     VWKV+  ++   +     ++P  P+REL E   + A     + S+   LA 
Sbjct: 1750 LDSGRDTTVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRIGNLA- 1806

Query: 1187 GRRVRVTVEVFGKGSYKGIGRN 1208
                  TVEVF  G   G  +N
Sbjct: 1807 ------TVEVFIDGVQVGAAQN 1822



 Score = 76.3 bits (186), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 46/147 (31%), Positives = 75/147 (51%), Gaps = 15/147 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y ++ +YY  KYG+ +   +QPL+     S   
Sbjct: 1267 FYVDSIRYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVDLIYRQQPLIRGRGVSYCK 1326

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
            N L+PR+ + +G      SEET  +          L PELCL+HP P SL R +  LPSI
Sbjct: 1327 NLLSPRFEHSEG-----ESEETHDKTYYVF-----LPPELCLVHPLPGSLVRGAQRLPSI 1376

Query: 434  LYRLNALLLADEIRTAVASEIGLGKVI 460
            + R+ ++LLA +++  +   +   K++
Sbjct: 1377 MRRVESMLLAVQLKNMINYPVQASKIL 1403



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N+P + ++ G 
Sbjct: 878  LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE-NLEGP 936

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               +  LA +   + AC+ L+E+    + L+P  K      E  E    +T E +  P +
Sbjct: 937  ICSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGGEKEKDE----QTDEGDPLPGT 991

Query: 120  TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
             + R+FY + +A              C  S     Y+YAVK
Sbjct: 992  ARHREFYPEGVADILKGEWILSGKDACNNSKLLHLYMYAVK 1032



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 48/181 (26%), Positives = 79/181 (43%), Gaps = 30/181 (16%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + +  INY  +  S +L+A+T AS      T CY+R E LGDA L ++++R L+      
Sbjct: 1388 QLKNMINYPVQ-ASKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1443

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAEN 1092
              G LT +R  +V+N++    A+  G   + +          +PG+  V     K    +
Sbjct: 1444 HEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESS 1503

Query: 1093 DFTLNQEYYLME-------GECDEAEDIEV-----------PKALGDLFESVAGAIYLDS 1134
             F   +    +E       G  DE ED E+            K L D+ E++ G  Y++ 
Sbjct: 1504 LFDQERSISKIERMDCHTDGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEG 1563

Query: 1135 G 1135
            G
Sbjct: 1564 G 1564


>gi|62320294|dbj|BAD94606.1| CAF protein [Arabidopsis thaliana]
          Length = 690

 Score =  212 bits (540), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 152/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 156  ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 215

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 216  RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 268

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 269  EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 316

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F + E ++ Y FK+K  L++A+THAS   ++  
Sbjct: 317  DPDEVDGTLKNVNVPESVLKS---ID-FVRLERALKYEFKEKGLLVEAITHASR-PSSGV 371

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 372  SCYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 431

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 432  RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 483

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 484  FLDSGKDTTAAWKVFQPLLQPMVT--PETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 539

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 540  TATVEVFIDGVQVGVAQN 557



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)

Query: 350 LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ-- 407
           ++YG+ +   +QPL+     S   N L+PR+             E   E    L K    
Sbjct: 42  IRYGVDLNCKQQPLIKGRGVSYCKNLLSPRF-------------EQSGESETVLDKTYYV 88

Query: 408 LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
            L PELC++HP   SL R +  LPSI+ R+ ++LLA +++  ++  I   K++
Sbjct: 89  FLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKIL 141



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 138  SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 194

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 195  SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 254

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 255  SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 299


>gi|379987676|gb|AFD22618.1| dicer-like 1 protein, partial [Nicotiana attenuata]
          Length = 1690

 Score =  211 bits (538), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 147/437 (33%), Positives = 230/437 (52%), Gaps = 40/437 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ +L+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1162 ERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQAD 1221

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P Y E    E    +S++    + N           +  +     
Sbjct: 1222 RFSP-SRWAAPG-VLPVYDEDTNEEE---SSMFGNEIIENGT---------VAAKTLAAD 1267

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +   +   +  +  +  +   +  K++AD VEALIG Y ++ G   A  FM W+G++V  
Sbjct: 1268 EFEDEEAEEGELDTDSGSYRVLSSKTMADVVEALIGVYYVDGGKYAANHFMKWIGVEVDF 1327

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    I P + PE+   S   +D FDK + ++N  F DK  LL+A+THAS   + ++
Sbjct: 1328 DFKETEYSIRPYSIPENVLRS---VD-FDKLQGALNISFNDKGLLLEAITHASRPSSGVS 1383

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+ G H   
Sbjct: 1384 -CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHGLHLHL 1442

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +H S  L + I+ FV ++ +N+ +         G+C      + PK LGD+FES+AGAI+
Sbjct: 1443 RHGSSALEKQIRDFV-IEVKNELSKPGFNSFGLGDC------KAPKVLGDIFESIAGAIF 1495

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            LDSG     VWKV+  ++   +     ++P  P+REL E   + A+  + +    G    
Sbjct: 1496 LDSGCDTAVVWKVFQPLLHPMVT--PETLPMHPVRELQERCQQQAQGLEYKASRSGN--I 1551

Query: 1192 VTVEVFGKGSYKGIGRN 1208
             TVEV+  G   G+ +N
Sbjct: 1552 ATVEVYVDGIQVGMAQN 1568



 Score = 63.5 bits (153), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 68/147 (46%), Gaps = 12/147 (8%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y ++  YY  KYG+ +   +QPLL     S   
Sbjct: 1008 FYVDCIPNDMTAENSFPRKEGYLGPLEYSSYAAYYKQKYGVDLVYKKQPLLRGRGVSYCK 1067

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
            N L+PR+ + +           +            L PELC +HP P SL R +  LPSI
Sbjct: 1068 NLLSPRFEHSEEHEGELEEATDKTYY-------VFLPPELCFLHPLPGSLVRGAQRLPSI 1120

Query: 434  LYRLNALLLADEIRTAVASEIGLGKVI 460
            + R+ ++LLA +++  +   +   K++
Sbjct: 1121 MRRVESMLLAVQLKDMIGYPVPALKIL 1147



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 79/161 (49%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N+P ++ + G 
Sbjct: 621 LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCRLQLPCNAPFEK-LEGP 679

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   ++AC+ L+++    + L+P       L +     V +  E +  P +
Sbjct: 680 VCSSMRLAQQAVCLDACKKLHQMGAFTDMLLPDKGSGAELEK-----VEQDDEGDPIPGT 734

Query: 120 TKRRQFYHKRMASCFT---------NCRPSVNTPCYLYAVK 151
           ++ R+FY + +A             +C  S     Y+YA+K
Sbjct: 735 SRHREFYPEGVADILKGEWILSGKDSCDSSKLVHLYMYAIK 775



 Score = 49.3 bits (116), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 43/77 (55%), Gaps = 3/77 (3%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R+L+        G LT +R  +V+N
Sbjct: 1146 ILEALTAASC---QETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSN 1202

Query: 1056 IIFASLAVRLGFHHFFK 1072
            ++    A+  G   + +
Sbjct: 1203 MVLYQYALNKGLQSYIQ 1219


>gi|255548081|ref|XP_002515097.1| dicer-1, putative [Ricinus communis]
 gi|223545577|gb|EEF47081.1| dicer-1, putative [Ricinus communis]
          Length = 1543

 Score =  211 bits (537), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 159/464 (34%), Positives = 240/464 (51%), Gaps = 42/464 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1015 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALIKGLQSYIQAD 1074

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P + E         +SL++       K L   K          + 
Sbjct: 1075 RFAP-SRWAAPG-VLPVFDEDT---KDGDSSLFD-----QEKSLIENKPKVDHADDGYED 1124

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            D   D  ++S    +  +   +  K++AD VEALIG Y +E G   A   M W+G+KV  
Sbjct: 1125 DEIEDGELES----DSSSYRVLSSKTLADVVEALIGIYYVEGGKTAANHLMRWIGIKVEF 1180

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    I P   PES   S   +D FD  E ++N +F+D+  L++A+THAS   + ++
Sbjct: 1181 DHEEIDSAIRPSNVPESILRS---ID-FDALEGALNIKFQDRGLLVEAITHASRPSSGVS 1236

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV    H   
Sbjct: 1237 -CYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVNHKLHVHL 1295

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +H S  L + I+ FV+ + +++ +         G+C      + PK LGD+ ES+AGAI+
Sbjct: 1296 RHGSSALEKQIRDFVR-EVQDELSKPGFNSFGLGDC------KAPKVLGDIVESIAGAIF 1348

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            LDSG     VWKV+  ++   +     ++P  P+REL E   + A   + +    G    
Sbjct: 1349 LDSGRDTAVVWKVFQPLLHPMVT--PETLPMHPVRELQERCQQQAEGLEYKATRSGN--L 1404

Query: 1192 VTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
             TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A+ K
Sbjct: 1405 ATVEVFIDGVQVGVAQNPQKKMAQKLAARNALVILKDKETAEAK 1448



 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 70/136 (51%), Gaps = 16/136 (11%)

Query: 319 FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
           FYV  I  ++   + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 861 FYVDSIRYDMTAENSFPRKEGYLGPLEYSSYADYYKQKYGVELMFKQQPLIRGRGVSYCK 920

Query: 374 NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
           N L+PR+ +         S+    E  E L K     L PELCL+HP P SL R +  LP
Sbjct: 921 NLLSPRFEH---------SDSNEGESEEILDKTYYVFLPPELCLVHPLPGSLVRGAQRLP 971

Query: 432 SILYRLNALLLADEIR 447
           SI+ R+ ++LLA +++
Sbjct: 972 SIMRRVESMLLAIQLK 987



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 48/171 (28%), Positives = 77/171 (45%), Gaps = 37/171 (21%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 999  ILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1055

Query: 1056 IIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTL-NQEYYLMEG- 1105
            ++    A+  G   + +          +PG+  V     K   + D +L +QE  L+E  
Sbjct: 1056 MVLYQYALIKGLQSYIQADRFAPSRWAAPGVLPVFDEDTK---DGDSSLFDQEKSLIENK 1112

Query: 1106 ----------ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                      E DE ED E+            K L D+ E++ G  Y++ G
Sbjct: 1113 PKVDHADDGYEDDEIEDGELESDSSSYRVLSSKTLADVVEALIGIYYVEGG 1163



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/162 (25%), Positives = 76/162 (46%), Gaps = 17/162 (10%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N P ++ + G 
Sbjct: 473 LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPSNVPFEK-LEGP 531

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E  E  V +  E E  P +
Sbjct: 532 LCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG----EEREQ-VDQNDEGEPLPGT 586

Query: 120 TKRRQFYHKRMASCFTN-----CRPSVNTP-----CYLYAVK 151
            + R+FY + +A+          R   N        Y+YAVK
Sbjct: 587 ARHREFYPEGVANILQGEWILCGRDGWNNSNKLLHLYMYAVK 628


>gi|444841769|gb|AGE12617.1| Dicer 2 [Nilaparvata lugens]
          Length = 1448

 Score =  211 bits (536), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 128/345 (37%), Positives = 203/345 (58%), Gaps = 21/345 (6%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDSFLKYA+++ L+  +P + EG+L+ ++ K + N NLF  G+QK  G  + A 
Sbjct: 1054 ERLETLGDSFLKYAVSLLLFIRFPELSEGQLTMIKGKVIGNRNLFYCGEQKGLGSIIKAV 1113

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGF-PASLWNC-LSLPNLK--ELSPEKVLEIIKQK 897
            +F    +W+ PG+ V + ++    E    P  L+   LS   ++  +LSP +  +II++K
Sbjct: 1114 EFNTESDWIAPGFCVDRTVQNLFRELNINPRYLYEIPLSRDEIECGKLSP-RTKDIIEEK 1172

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
              +     D++  +    + ++Q  I +K+++D VEAL+G Y+   G       + WL +
Sbjct: 1173 LEEW--EEDLDYCNYSNAHFISQQVISNKTVSDSVEALLGLYIQSYGLEKGFDMLRWLKV 1230

Query: 958  ---KVIPPVTNPESKHLSDVLLDGF---------DKFEESINYRFKDKSYLLQAMTHASY 1005
               K+I P    + K    +L  G          D  E+ INY+FK++++LLQA++H +Y
Sbjct: 1231 IDPKLITPDVYTKKKVEPTILFKGGQIDFHIHHPDYLEKLINYKFKNRAFLLQALSHPTY 1290

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              N +T  YQRLEFLGDAILD+L+T H+YE     +PG LTDLRSALVNN+  AS+AVR+
Sbjct: 1291 QPNNITPTYQRLEFLGDAILDFLVTTHMYEYCDNLTPGELTDLRSALVNNVTLASIAVRI 1350

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAE--NDFTLNQEYYLMEGECD 1108
            G H F    S  L +VI+ FV+ Q    +DF+ +  + + E +C+
Sbjct: 1351 GLHKFLLLRSCQLSKVIEAFVERQESRNHDFSDDTLFLIDEIDCN 1395



 Score =  158 bits (399), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 233/496 (46%), Gaps = 71/496 (14%)

Query: 5   IFIVNRYCARLPSDIFTRLAP-----IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           I ++NRYC  L  D F+ L P     +   +   E++ +++   ++LPI+SP++  +   
Sbjct: 465 IALINRYCMSLDCDRFSTLTPFWWKEVSKKNGFNENNIVVY---LQLPISSPVRDVIKSD 521

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL-----------------YEN 102
             P   LA R AA++AC++LY+ +ELD+ ++P  K    L                  ++
Sbjct: 522 AFPNVELAKRSAALKACKLLYDSRELDDKMLPRGKTSQQLEDRGLFPCWRDEAPPTESDD 581

Query: 103 TEPVVPKTPEI--ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD 160
           +  +V   P +  +T   + K +  Y+K+   C   CRP      Y++ +KMK   P+  
Sbjct: 582 SAALVRVGPVVKRQTLVGTKKCKSIYNKKFPECMCECRPMPGEKVYMHIIKMK---PVYS 638

Query: 161 E-QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEEN 219
           E +  R +       S    AILTTK  P + S  I       E+  +  +         
Sbjct: 639 EPKGNRKKAFFELLKSDSEFAILTTKKWP-MTSLIIMKLTHMFELCFQPFE--------- 688

Query: 220 LSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSE--QIVIDWKFMTLISE 277
                         ++ L  YL++F    +    F    V ++E  + VI+W  +   ++
Sbjct: 689 --------------LINLAFYLIVFRLFINRLQSFFFTNVLENENGRSVINWSVIR-DNQ 733

Query: 278 HHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSR 337
              ++I    E+ +++ V  E  ++++VV+PWYR       + V ++  N    S FPS 
Sbjct: 734 EFPEIISPPVEERQKDIVVTEEIYKNSVVIPWYRGFLPRQAYIVTDLSKNETALSDFPS- 792

Query: 338 TNTYQTFEEYYSLKYG--LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEET 395
              Y T+E+Y+  KY    ++ + ++PLL+V   S RLN L PR+      ++  TS+  
Sbjct: 793 -GDYPTYEKYFVTKYANVEKLYSAQKPLLEVRALSRRLNCLRPRH------SVQATSKRK 845

Query: 396 RREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIG 455
           +++  E       LVPELC+    PA+ W K+  LPS ++R+ ALLLADE+R  +A+++ 
Sbjct: 846 KKQEEEFEES---LVPELCVRCAVPAAYWLKATLLPSCVHRITALLLADELRVTIATDLN 902

Query: 456 LGKVILDEKVEWPPFN 471
           L  V L     W P +
Sbjct: 903 LSTVTLPPGRSWRPIS 918


>gi|80979133|gb|ABB54769.1| Dicer-2 [Drosophila teissieri]
          Length = 1719

 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 165/548 (30%), Positives = 257/548 (46%), Gaps = 102/548 (18%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  +  +P + CE      +S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1174 LQKTVSGKHITPAEQCEFLAAITSSSTADV-FDME------------RLEILGDSFLKLS 1220

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          + +    F PR  WLPP   
Sbjct: 1221 ATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKKISTILFTPRYTWLPPSIS 1280

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD------------- 902
            +P  +     E    AS+   +   NL++L+  +   +++  C D++             
Sbjct: 1281 LPHNVLALWREKPELASM---VGPHNLRDLALGEEESLVRGYCSDINYNSFVEGCRANAQ 1337

Query: 903  ---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
                  D + +      LVT   I DK IAD +EAL+G  +   G + A   + +  +  
Sbjct: 1338 SHHAGADFSAEVNFCVGLVT---IADKVIADTLEALLGVIVKNYGLQHAFRMLEYFKICR 1394

Query: 958  -KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYRFKDKSYLLQAMTHA 1003
              +  P+T         SK  ++V    +DGF       E ++ Y FKD+ YLLQA+TH 
Sbjct: 1395 ADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYTFKDRGYLLQALTHP 1454

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN   A + V
Sbjct: 1455 SFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICV 1514

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------------------ 1104
            R   H F    +  L E I +FV+ Q ++     N    L+E                  
Sbjct: 1515 RHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADVQPTTLDLDDDLDMT 1574

Query: 1105 --------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                                G+ + + +++VPKALGD+ E +  AIYLD    L   W+V
Sbjct: 1575 DLKNALKSISHEEEQNDPAKGDFNMSTNVDVPKALGDVLEXLIAAIYLDC-RDLQRTWEV 1633

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV---------TVE 1195
             + + K E++  + +VP + IR+L E +  N  FS P  + D  +V V         +++
Sbjct: 1634 IFNLFKPELQEFTRNVPINAIRQLTEHKHANPVFSSP--IIDQDKVMVSCQFTCMEKSIK 1691

Query: 1196 VFGKGSYK 1203
            V+G GS K
Sbjct: 1692 VYGFGSNK 1699



 Score =  136 bits (343), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 124/475 (26%), Positives = 221/475 (46%), Gaps = 46/475 (9%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   I+ ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WINSLQEDTRKILFGDCARSKEVVSIKLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVV 107
             ++    M     A   AA + C++LY+L EL+   +P+T KE +       +E+ +   
Sbjct: 624  DTIYSDPMDNVKAAKISAAFKTCKLLYQLGELNERFLPITLKERVAAIADVHFEHWKKYG 683

Query: 108  PKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRG 166
                 I    ++ K  + Y     + F + RP V   CY Y + ++     P  E     
Sbjct: 684  DDVTAI-VRKNAPKVVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFESCDYT 737

Query: 167  RKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLI 225
              ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ + E L     
Sbjct: 738  EHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQNSEQLELLHQ 797

Query: 226  FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVIQ 284
            F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW  +T           
Sbjct: 798  FHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQAENS 857

Query: 285  DIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTF 344
             + +++++     E  F   +V  WY N FE     V ++   + P S+   + +  +T+
Sbjct: 858  SVHQRKQQTAPRPED-FEGKIVSQWYAN-FEHKRMLVTKVHRELTPLSLM-EKNHQDKTY 914

Query: 345  EEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
             E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +          
Sbjct: 915  YEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAQSKARA------ 964

Query: 402  SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
                K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + + L
Sbjct: 965  ----KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEGLRKRFNTYLNL 1015


>gi|297848414|ref|XP_002892088.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297337930|gb|EFH68347.1| hypothetical protein ARALYDRAFT_333551 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1962

 Score =  210 bits (535), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 150/438 (34%), Positives = 230/438 (52%), Gaps = 47/438 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ +L+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1428 ERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1487

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1488 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1540

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1541 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKVAANHLMKWIGIHVED 1588

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ + FK+K  L++A+THAS   + ++
Sbjct: 1589 DPDEVEGTVKNVNVPESVLKS---ID-FVGLERALKFEFKEKGLLVEAITHASRPSSGVS 1644

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1645 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1703

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L + I+ FVK +Q E+       + L  G+C      + PK LGD+ ES+AGAI
Sbjct: 1704 RHGSSALEKQIREFVKEVQTESSKPGFNSFGL--GDC------KAPKVLGDIVESIAGAI 1755

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            +LDSG      WKV+  +++  +     ++P  P+REL E   + A   + +    G   
Sbjct: 1756 FLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQERCQQQAEGLEYKASRSGN-- 1811

Query: 1191 RVTVEVFGKGSYKGIGRN 1208
              TVEVF  G   G+ +N
Sbjct: 1812 TATVEVFIDGVQVGVAQN 1829



 Score = 56.6 bits (135), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/115 (30%), Positives = 58/115 (50%), Gaps = 15/115 (13%)

Query: 348  YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
            ++L+YG+ +   +QPL+     S   N L+PR+             E   E    L K  
Sbjct: 1312 HNLRYGVDLNCKQQPLIKGRGVSYCKNLLSPRF-------------EQSGESETILDKTY 1358

Query: 408  --LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
               L PELC++HP   SL R +  LPSI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1359 YVFLPPELCVVHPLSGSLVRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKIL 1413



 Score = 53.1 bits (126), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 73/165 (44%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R+L+        G LT +R  +V
Sbjct: 1410 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRYLFLKYPQKHEGQLTRMRQQMV 1466

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1467 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1526

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1527 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1571



 Score = 51.2 bits (121), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 38/161 (23%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 830 LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 888

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         ++ E  V +  E E  P +
Sbjct: 889 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG----QDAEK-VDQDDEGEPVPGT 943

Query: 120 TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
            + R+FY + +A              C  S     Y+Y+V+
Sbjct: 944 ARHREFYPEGVADVLKGEWILSGKEICESSKLFHLYMYSVR 984


>gi|195150547|ref|XP_002016212.1| GL10619 [Drosophila persimilis]
 gi|194110059|gb|EDW32102.1| GL10619 [Drosophila persimilis]
          Length = 1720

 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 171/566 (30%), Positives = 264/566 (46%), Gaps = 94/566 (16%)

Query: 710  ASNPSKNTAIL--TEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF 767
            A NP+   A+L  T        LN    + K V  +  +P    E      T+  +D   
Sbjct: 1157 AMNPAARPALLPPTSSAPKPQSLNVLPVLMKSVSDDHITPAHQGEFLAAITTAGSADVY- 1215

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
                D+E        R E +GDSFLK + +++L   YP+ +EG L+ ++S+ VSN NL  
Sbjct: 1216 ----DME--------RAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMY 1263

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
              ++      +  + F+PR  WLPP   +P+ +     E    A L    +L +L  LS 
Sbjct: 1264 CLRETDIPSRISCSLFDPRLTWLPPSINLPEDVLDVWTEQPSFAKLIGPHNLFDLA-LSD 1322

Query: 888  EKVLEIIKQKCVD-------LDCTVDM-------NVQSVVPYNLVTQHSIPDKSIADCVE 933
            E   EI+  +C +         C  +        +  S V Y    + ++ +K +AD +E
Sbjct: 1323 E---EILAGRCNEDTYRRFVHGCKSNQQGYYAGRDFSSGVNY-FFGEVTVQNKVVADTLE 1378

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVL-------------LDGF- 979
            AL+G  +   G +     + + G+   P V  P S+ L   L             +DGF 
Sbjct: 1379 ALLGVIVRNYGLQHGFRMLEYFGI-CKPEVDKPLSQLLDLQLKSTKMRANASPGDIDGFL 1437

Query: 980  ---DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
                  E+++ Y+F+D+ YLLQA+TH S+  N LT CYQ LEF+GDAILD+LI+ +++E+
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFT 1095
                 PG LTDLRSALVNN     + VR   H F    +  L E I +FVK Q ++    
Sbjct: 1498 NTKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557

Query: 1096 LNQEYYLME-----------------------------GECDEAEDIEVPKALGDLFESV 1126
             N   +L+E                             G  + A++++VPKALGD+ E++
Sbjct: 1558 TNHVRFLLEERDVQPVILDLDDEVEMAMENDSEDGPPIGAFNLAQNVDVPKALGDVLEAL 1617

Query: 1127 AGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLAD 1186
              A+Y+D    L T W++ Y + + E++  S ++P SPIR+L E +  N  +  P  L D
Sbjct: 1618 IAAVYMDC-RDLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHEHKLANPVYGPP--LVD 1674

Query: 1187 GRRVRV---------TVEVFGKGSYK 1203
               V +         T+ V G GS K
Sbjct: 1675 KDVVMMYCQFTCMEKTIRVTGFGSNK 1700



 Score =  139 bits (351), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 134/518 (25%), Positives = 233/518 (44%), Gaps = 73/518 (14%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFT-------CSIRLPINSPLKRS 55
            +A+ +++RYC  LPSD F  + P  T+    +   +  T        SI LP++S ++  
Sbjct: 573  SALILLHRYCQSLPSDAFGFVEPWFTLISWDQKRELFGTQAASKEFVSIELPLSSSVRDI 632

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE----------FINLYENTEP 105
                 M +   A   AA + C  LY   EL+   +PVT +          F +  + ++ 
Sbjct: 633  FYSDPMTSVKAAKISAAFKTCIKLYSTGELNERFLPVTLKDRVTAIADFHFDHWKKYSDD 692

Query: 106  VVPKTPEIETYPDSTKRRQFYHKRMASC---FTNCRPSVNTPCYLYAVKMKLTCPIPD-E 161
            V+    + +  P++    +       SC   F +CRP V   CY Y + ++     P  E
Sbjct: 693  VIDTVNKQKLKPETQTTLK------TSCPTEFYDCRPRVGEVCYAYEIILE-----PQFE 741

Query: 162  QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSE-ENL 220
            +N     IH    S +  A+L  K +P +   P+F   G + V +    + +V++  E L
Sbjct: 742  RNDYTEHIHDNMLSGRNFALLLRKQLPPLSKMPLFCNQGPLHVQVREHPRELVIANAEQL 801

Query: 221  SNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP-TVSDSEQIVIDWKFMTLISEHH 279
                 F   LF  +LK+ +   + D     NSY IVP  V    Q V+DW   +L+ +  
Sbjct: 802  EQLHQFHGMLFRDLLKIWRPCFVLDRRGKVNSYLIVPLAVGPEHQNVVDW---SLVRQ-- 856

Query: 280  NDVIQDIP-------EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
                Q +P       ++ +E        +   +V  WY N F      V ++  ++ P S
Sbjct: 857  ---FQRLPTPKPVSVKQRKEQQAPRPEDYEGKIVTQWYAN-FASKRMLVHKVRRDLTPSS 912

Query: 333  MFPS-RTNTYQTFEEYYSLKYGLQIQN---LEQPLLDVDHTSCRLNFLTPRYVNRKGINL 388
            +  S   NT  ++ E+ + KYG  I+    ++Q L++V   + +LNF    YV ++G   
Sbjct: 913  LMESNHQNT--SYGEFTTSKYGDDIEGIVRMDQFLIEVRELTEQLNF----YVQQRG--- 963

Query: 389  ATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRT 448
              TS +++  +      K +L+PELC    FP  LW K++ LPSIL RL+ +L A+ +R 
Sbjct: 964  -KTSAQSKARV------KIILIPELCFNFDFPGDLWIKAMFLPSILNRLHFMLHAEALRQ 1016

Query: 449  AVASEIGLGKVILDEKVEWPP--FNFGWKMKKLKEKYG 484
               + +GL + +    V++ P      W +++  + +G
Sbjct: 1017 RFNTYLGL-QHLPQNGVDYRPKLLEIDWSLRRNVDSHG 1053


>gi|391348710|ref|XP_003748587.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1732

 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 172/553 (31%), Positives = 254/553 (45%), Gaps = 78/553 (14%)

Query: 734  GSVEKDVKTEPKSPG---KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP--------- 781
            G  EK ++T  +  G   + C+     +     D S   QPDL N  GPSP         
Sbjct: 1148 GVKEKLIETPAREFGALVRQCQQDFDASNLRIPDVS---QPDLRNCLGPSPCDIMKALTT 1204

Query: 782  ---------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
                     +RLE +GDSFL+   T  +    PN+   +L+ LR  +V+N +L      K
Sbjct: 1205 KASQEVFDLERLELLGDSFLQIVATFSVLDRNPNMSISELNVLRQYEVNNRHLLCRAHDK 1264

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSL-----PNLKELSP 887
                 + A  F+   N+LP G   P   E  L+       L  C        P LK L  
Sbjct: 1265 KLTSVLEAYPFKATHNFLPLGC-RPIPHEEKLLRRDILCLLVQCFDYDEDLTPKLKNLRH 1323

Query: 888  EKVLEIIKQKCVDLDCTVDMNVQSVVPY------NLVTQHSIPDKSI--------ADCVE 933
             K +  + +K      +   N+Q +  Y       L  +H +P +S          D VE
Sbjct: 1324 CKFIRRLLEKFAREQPS---NLQEMAKYAFLQDDQLPLRHDVPVRSFHDFKAKVGGDVVE 1380

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGF-------------- 979
            AL G YL +CGP GAL F  W+G+ +     + ES +  D     F              
Sbjct: 1381 ALAGTYLEQCGPIGALRFFRWIGMDL----GDTESNNFLDAFKLDFSAAQNIPAECLKSY 1436

Query: 980  ----DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                +K E+ I++ FK K  +LQA+TH S   + LT+ Y RL F+G+A+ DYL+T ++Y 
Sbjct: 1437 QYLIEKVEKQIDFTFKSKGLVLQAITHHSCRDHLLTEDYNRLAFIGEAVADYLLTLYIYG 1496

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                  PG L+DLRSAL+NN + A   VR   H    + +  L   I+++  ++  +D  
Sbjct: 1497 LSSNLDPGQLSDLRSALINNQVTAYAVVRAELHTVLLYTNSKLFSAIRKY--LENIDDIG 1554

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
            L     L + E D+AE+ EVP+ L  + +S+ GA+++DSG S ++VW++   IM  EI  
Sbjct: 1555 LRLNTVLGDWETDDAEEAEVPRPLARILQSILGAVFIDSGKSFESVWRILVRIMGHEIAL 1614

Query: 1156 LSVSVPKSPIRELLELEPENARFSKPEKLADGR-----RVRVTVEVFGKG-SYKGIGRNY 1209
             S +VP  P  EL +  P    FSK   + +G       V++TV   GK  +Y  I  N 
Sbjct: 1615 FSRNVPIPPTTELCKKFPGTV-FSKAVPILEGEDEGKFEVKLTVSRNGKTETYSQIAENK 1673

Query: 1210 CIAKCTAAKCALK 1222
             IAK T AK  L+
Sbjct: 1674 KIAKTTLAKRYLR 1686



 Score =  122 bits (307), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 140/525 (26%), Positives = 216/525 (41%), Gaps = 79/525 (15%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI +++ YC +     +  + P        E+ +  + C++ +PI  PL+  V+    P
Sbjct: 657  SAISVIHSYCQQFMRMKYPNVFPFFDF----EETAGGYICTLTMPIVCPLREKVSNATRP 712

Query: 63   --TKLLAWRIAAMEACRVLYELKELDNDLMPVTK--EFINLYENTEPVVPKTPE------ 112
              +K  A    A+E C+ L+   EL ++L+P  +   F  L    E V  K  E      
Sbjct: 713  FESKDKAKMFVALEMCKRLHACGELSDNLLPRRRLINFCKLPTKREDV--KASEELRAVM 770

Query: 113  -IETYPDSTKRRQFYHKRMASCF------TNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             +       K+R    ++ A+         +C P  +    LY +K  +     + QN R
Sbjct: 771  VLNGVKSHQKKRYILPRKQAAILELREENIDCEPRDSYE--LYVIKTDVIAFASNLQNWR 828

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFP---IFTRCGEVEVSIELIDKNVVLSEENLSN 222
            G  +  P   P  LAI+      ++ S P   IFTR GE  VS   ID   +  ++ L  
Sbjct: 829  GEDLFDPSKYPTWLAIIMRSGSSELLSVPKFSIFTRSGEERVS--FIDAGPIGLDDKLKK 886

Query: 223  TLI-FMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHND 281
                F  Y F  VL+    ++    N        V  V +     +D   +  +      
Sbjct: 887  LCTRFNRYAFHVVLETIDEMVDLATNFHTPCLVPVKEVDNGGTFELDMDVLLALG----- 941

Query: 282  VIQDIPEK--ERENFVFDESKFRDAVVMPWYR---NQFEPTY-------------FYVAE 323
                 P K  + ENFVF E  + DAVV   Y    NQ + +              FYV +
Sbjct: 942  -----PAKLPDFENFVFKEEDYEDAVVELLYHIDENQKKLSRDAHTKVPQDIYRRFYVTK 996

Query: 324  -IMTNVHPRSMFPSRTNTY-----QTFEEYY---SLKYG-LQIQNLEQPLLDVDHTSCRL 373
             I TN    ++ P  T  Y      +F +Y    +L+ G  ++    QP+L V+H   RL
Sbjct: 997  PIATNEKGVALTPETTGYYGFNKSMSFADYALRKTLRAGPSKLLKAHQPVLTVEHAHKRL 1056

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
              L  R+ N+         +E R+      G K LL P+ C +H   ASLWRK  S+PSI
Sbjct: 1057 QMLYSRFENQ---------QERRQNYVSDFGTKYLL-PQFCAVHSIKASLWRKICSIPSI 1106

Query: 434  LYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKK 478
            LYRLN LL A+ IR  ++    L +       +W P  F   +K+
Sbjct: 1107 LYRLNRLLTAETIRHEISVACRLKQPPTPSPEKWSPMEFKRGVKE 1151


>gi|224068194|ref|XP_002302679.1| dicer-like protein [Populus trichocarpa]
 gi|222844405|gb|EEE81952.1| dicer-like protein [Populus trichocarpa]
          Length = 1817

 Score =  210 bits (534), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 154/468 (32%), Positives = 235/468 (50%), Gaps = 51/468 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1335 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKGLQSYIQAD 1394

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P + E       +                  EK L   +     L
Sbjct: 1395 RFAP-SRWAAPG-VLPVFDEETKDGDSYI--------------FDQEKSLAEDRTGMNHL 1438

Query: 902  DCTVDMNVQ-SVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV- 959
            D   +  ++   +  +  +   +  K++AD VEALIG Y +E G       M W+G++V 
Sbjct: 1439 DDGYENEIEDGELESDASSYRVLSSKTLADVVEALIGVYYVEGGKNAVNHLMKWIGIQVE 1498

Query: 960  -----IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                 I   + P +   S +    FD  E +++ +F D+  L++A+THAS   + ++ CY
Sbjct: 1499 FDHEEIDGASRPFNVPESVLRSVDFDTLEGALDIKFNDRGLLIEAITHASRPSSGVS-CY 1557

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H   +H 
Sbjct: 1558 QRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1617

Query: 1075 SPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            S  L + I+ FV+ +Q E      N F L        G+C      + PK LGD+ ES+A
Sbjct: 1618 SSALEKQIRDFVREVQDELLKPVFNSFGL--------GDC------KAPKVLGDIVESIA 1663

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG     VWKV+  ++   +     ++P  P+REL E   + A   + +    G
Sbjct: 1664 GAIFLDSGRDTAVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKATRSG 1721

Query: 1188 RRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
                 TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A+ K
Sbjct: 1722 N--LATVEVFIDGVQVGVAQNPQKKMAQKLAARNALVVLKEKETAEAK 1767



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 16/149 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++     FP +        Y ++ +YY  KYG++++  +QPLL     S   
Sbjct: 1181 FYVDSICYDMTAEISFPRKEGYLGPLEYSSYADYYKQKYGVELKFKQQPLLRGRGVSYCK 1240

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ +         S+    +  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1241 NLLSPRFEH---------SDSNEGDAEENLDKTYYVFLPPELCLVHPLPGSLVRGAQRLP 1291

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA E++  +   +   K++
Sbjct: 1292 SIMRRVESMLLAVELKDIINYPVPASKIL 1320



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 46/171 (26%), Positives = 75/171 (43%), Gaps = 34/171 (19%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1317 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1373

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLME- 1104
            +N++    A+  G   + +          +PG+  V     K    + +  +QE  L E 
Sbjct: 1374 SNMVLYQYALNKGLQSYIQADRFAPSRWAAPGVLPVFDEETK--DGDSYIFDQEKSLAED 1431

Query: 1105 ---------GECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                     G  +E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1432 RTGMNHLDDGYENEIEDGELESDASSYRVLSSKTLADVVEALIGVYYVEGG 1482



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 39/161 (24%), Positives = 69/161 (42%), Gaps = 26/161 (16%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LPSD ++ L P  I     K      ++C ++LP N+P +      
Sbjct: 802 LNSAVGLVHFYCSQLPSDRYSILRPGFIMEKHEKPGGPTEYSCKLQLPCNAPFEE----- 856

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
                 L      + AC+ L+E+    + L+P         E  +  V +  E E  P +
Sbjct: 857 ------LEGPAVCLAACKKLHEMGAFTDMLLPDKGS-----EEEKDKVDQNDEGEPLPGT 905

Query: 120 TKRRQFYHKRMASCFT---------NCRPSVNTPCYLYAVK 151
            + R+FY + +A              C  S     YLY V+
Sbjct: 906 ARHREFYPEGVAKTLQGEWILCGRDGCNNSKVLHLYLYGVR 946


>gi|80979105|gb|ABB54755.1| Dicer-2 [Drosophila simulans]
 gi|80979109|gb|ABB54757.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 240/510 (47%), Gaps = 72/510 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEA-GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
             F PR  W+PP   +P  +     E  GF     N +   NL++L+ +    ++K  C D
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREKPGFA----NMIGPHNLRDLALDDEESLVKGNCSD 1320

Query: 901  LDCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
            +           N QS    +         V   +I +K IAD +EAL+G  +   G + 
Sbjct: 1321 IKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQH 1380

Query: 948  ALLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFK 991
            A   + +  +      K +  + N E        +++   +DGF       E ++ Y FK
Sbjct: 1381 AFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFK 1440

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D+ YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSA
Sbjct: 1441 DRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSA 1500

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------ 1104
            LVNN   A + VR   H F    +  L E I +FV  Q ++     N  + L+E      
Sbjct: 1501 LVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEADVQP 1560

Query: 1105 -----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                                         GE + + +++VPK LGD+ E++  AIYLD  
Sbjct: 1561 TPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEALIAAIYLDC- 1619

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVE 1195
              L   W+V + + + E++  + ++P +PIR+L+E +     FS P    D   V     
Sbjct: 1620 RDLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIEHKHAKPVFSSPIMEGDTLMVSCQFT 1679

Query: 1196 VFGKG-SYKGIGRNYCIAKCTAAKCALKHL 1224
               K     G G N   AK +AAK AL+ L
Sbjct: 1680 CMEKSIKVYGFGSNKNQAKLSAAKHALQLL 1709



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 229/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              + ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SSVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076



 Score = 41.6 bits (96), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 40/186 (21%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL--------- 825
            N    S + LE IGD+ L + I+ +++     ++ G L+ LRS  V+N  L         
Sbjct: 1457 NRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRL 1516

Query: 826  --FKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF---PASLWNCLSLP 880
              F L + +   E++  +KF         G+ V  Y+   L EA     P  L + L LP
Sbjct: 1517 HFFILAENEKLSETI--SKFVNFQE--SQGHRVTNYVHILLEEADVQPTPLDLDDELELP 1572

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIG 937
            +               KC+  +       Q V P   +N+ T   +P K++ D +EALI 
Sbjct: 1573 H-------------ANKCISQEAE-----QGVPPKGEFNMSTNVDVP-KTLGDVLEALIA 1613

Query: 938  AYLIEC 943
            A  ++C
Sbjct: 1614 AIYLDC 1619


>gi|302793023|ref|XP_002978277.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
 gi|300154298|gb|EFJ20934.1| hypothetical protein SELMODRAFT_108314 [Selaginella moellendorffii]
          Length = 1728

 Score =  210 bits (534), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 144/445 (32%), Positives = 234/445 (52%), Gaps = 47/445 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD++LK+ ++  L+  +P  HEG+L+ +R + VSN  L++    K     + 
Sbjct: 1188 SYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            + +F P   W  PG  VP   +  L +A           +P   E          +++ +
Sbjct: 1248 SDRFAP-SRWAAPG--VPPVFDEDLKDANLDN---EAAEVPKANEHEERSTKSSGEEEVL 1301

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            D   +++        ++  +   +  K++AD VEALIG Y +E G + A  FM+W+ +  
Sbjct: 1302 DDSTSLE---DGEAEWDSSSYRVLSSKTLADVVEALIGVYYVEGGTKAAAHFMNWINI-- 1356

Query: 960  IPPVTNPESK--------HLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
              P+   E++         + D +++   F+K E +I Y+F+ KS L++A++HAS   + 
Sbjct: 1357 --PIDYDEAEANAARAGCSVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASR-PSA 1413

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEF+GDA+LD+LITR+L+   +   PG LTDLR+A VNN  FA ++V+  FH 
Sbjct: 1414 GVPCYQRLEFVGDAVLDHLITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHL 1473

Query: 1070 FFKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
              +H S  L   I+ FVK +Q+E D      + +         D + PK LGD+ ES+AG
Sbjct: 1474 HLRHGSSALEAQIKDFVKDIQSELDKPGINSFGI--------GDFKAPKVLGDILESIAG 1525

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFSKPEK 1183
            AI+LD+G++ D VWKV+  +++  +     ++P  P+REL E   + A     R S+   
Sbjct: 1526 AIFLDTGLAADEVWKVFERLLEPMV--TPDTLPVHPVRELQERCQQQAEGLEYRASREGS 1583

Query: 1184 LADGRRVRVTVEVFGKGSYKGIGRN 1208
            +A       TVEVF  G   G  +N
Sbjct: 1584 IA-------TVEVFVDGVQIGCAQN 1601



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 22/150 (14%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  +M  +   S FP +        Y ++ +YY  KYG+++    QP+L     S   
Sbjct: 1040 FYVESVMREMTAESPFPRKEGYLGSVEYSSYADYYEQKYGVRLHCRHQPMLRCRGVSHCK 1099

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ---LLVPELCLIHPFPASLWRKSVSL 430
            N L+PR+       L  +SEE        L  K    +L PE+CL+HP P  L R +  L
Sbjct: 1100 NLLSPRF------KLLESSEE--------LSDKTYYVMLPPEICLVHPLPGCLVRGAQRL 1145

Query: 431  PSILYRLNALLLADEIRTAVASEIGLGKVI 460
            PS++ R+ ++LLA +++  +   I   KV+
Sbjct: 1146 PSVMKRVESILLAVQLKHEIGFPIPAAKVL 1175



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           +++A+ +++ YC++LPSD ++ L P   +++    D + F+C +RLP N+P++ S  G  
Sbjct: 670 LNSAVGLIHFYCSQLPSDRYSILKPEFVLTKHSTGDVVYFSCKLRLPSNAPVE-SFDGPV 728

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVT 93
             T   A +   +EAC+ L+E+    + L+P T
Sbjct: 729 CSTMKGAQQAVCLEACKKLHEMAAFTDMLLPDT 761



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            P  +RLE +GD+ L + IT +L+  Y ++  G+L+ LR+  V+N N  ++  +  F
Sbjct: 1416 PCYQRLEFVGDAVLDHLITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSF 1471


>gi|198457361|ref|XP_001360634.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
 gi|198135949|gb|EAL25209.2| GA19635 [Drosophila pseudoobscura pseudoobscura]
          Length = 1720

 Score =  209 bits (533), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 170/566 (30%), Positives = 264/566 (46%), Gaps = 94/566 (16%)

Query: 710  ASNPSKNTAILTEILENI--NKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF 767
            A NP+   A+L      +    LN    + K V  +  +P    E      T+  +D   
Sbjct: 1157 AMNPAARPALLPPTSSALIPQSLNVLPVLMKSVSDDHITPAHQGEFLAAITTAGSADVY- 1215

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
                D+E        R E +GDSFLK + +++L   YP+ +EG L+ ++S+ VSN NL  
Sbjct: 1216 ----DME--------RAELLGDSFLKMSASLYLASRYPDWNEGTLTQVKSRLVSNKNLMY 1263

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
              ++      +  + F+PR  WLPP   +P+ +     E    A L    +L +L  LS 
Sbjct: 1264 CLRETDIPSRISCSLFDPRLTWLPPSINLPEDVLDVWTEQPSFAKLIGPHNLFDLA-LSD 1322

Query: 888  EKVLEIIKQKCVD-------LDCTVDM-------NVQSVVPYNLVTQHSIPDKSIADCVE 933
            E   EI+  +C +         C  +        +  S V Y    + ++ +K +AD +E
Sbjct: 1323 E---EILAGRCNEDTYRRFVHGCKSNQQGYYAGRDFSSGVNY-FFGEVTVQNKVMADTLE 1378

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVL-------------LDGF- 979
            AL+G  +   G +     + + G+   P V  P S+ L   L             +DGF 
Sbjct: 1379 ALLGVIVRNYGLQHGFRMLEYFGI-CKPDVDKPLSQLLDLQLKSTKMRANASPGDIDGFL 1437

Query: 980  ---DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
                  E+++ Y+F+D+ YLLQA+TH S+  N LT CYQ LEF+GDAILD+LI+ +++E+
Sbjct: 1438 INHSYLEQNLGYKFRDRGYLLQALTHPSFPTNRLTGCYQELEFIGDAILDFLISAYIFEN 1497

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFT 1095
                 PG LTDLRSALVNN     + VR   H F    +  L E I +FVK Q ++    
Sbjct: 1498 NNKLRPGELTDLRSALVNNTTLGCICVRHKLHLFILAENALLSETISKFVKFQESQGHRV 1557

Query: 1096 LNQEYYLME-----------------------------GECDEAEDIEVPKALGDLFESV 1126
             N   +L+E                             G  + A++++VPKALGD+ E++
Sbjct: 1558 TNHVRFLLEERDVQPVILDLDEEVEMAMENDSGDGPPIGAFNLAQNVDVPKALGDVLEAL 1617

Query: 1127 AGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLAD 1186
              A+Y+D    L T W++ Y + + E++  S ++P SPIR+L E +  N  +  P  L D
Sbjct: 1618 IAAVYMDC-RDLQTTWQMIYHLFEPELKEFSQNIPISPIRQLHEHKLANPVYGPP--LVD 1674

Query: 1187 GRRVRV---------TVEVFGKGSYK 1203
               V +         T+ V G GS K
Sbjct: 1675 KDVVMMYCQFTCMEKTIRVTGFGSNK 1700



 Score =  142 bits (359), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 136/518 (26%), Positives = 234/518 (45%), Gaps = 73/518 (14%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFT-------CSIRLPINSPLKRS 55
            +A+ +++RYC  LPSD F  + P IT+    +   +  T        SI LP++S ++  
Sbjct: 573  SALILLHRYCQSLPSDAFGFVEPWITLISWDQKRELFGTQAASKEFVSIELPLSSSVRDI 632

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE----------FINLYENTEP 105
                 M +   A   AA + C  LY   EL+   +PVT +          F +  + ++ 
Sbjct: 633  FYSDPMTSVKAAKISAAFKTCIKLYSTGELNERFLPVTLKDRVTAIADFHFDHWKKYSDD 692

Query: 106  VVPKTPEIETYPDSTKRRQFYHKRMASC---FTNCRPSVNTPCYLYAVKMKLTCPIPD-E 161
            V+    + +  P++    +       SC   F +CRP V   CY Y + ++     P  E
Sbjct: 693  VIDTVNKQKLKPETQTTLK------TSCPTEFYDCRPRVGEVCYAYEIILE-----PQFE 741

Query: 162  QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENL 220
            +N     IH    S +  A+L  K +P +   P+F   G + V +    + +V+ S E L
Sbjct: 742  RNDYTEHIHDNMLSGRNFALLLRKQLPPLSKMPLFCNQGPLHVQVREHPRELVIASAEQL 801

Query: 221  SNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP-TVSDSEQIVIDWKFMTLISEHH 279
                 F   LF  +LK+ +   + D     NSY IVP  V    Q V+DW   +L+ +  
Sbjct: 802  EQLHQFHGMLFRDLLKIWRPCFVLDRRGKVNSYLIVPLAVGPEHQNVVDW---SLVRQ-- 856

Query: 280  NDVIQDIP-------EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
                Q +P       ++ +E        +   +V  WY N F      V ++  ++ P S
Sbjct: 857  ---FQRLPTPKPVSVKQRKEQQAPRPEDYEGKIVTQWYAN-FASKRMLVHKVRRDLTPSS 912

Query: 333  MFPS-RTNTYQTFEEYYSLKYGLQIQN---LEQPLLDVDHTSCRLNFLTPRYVNRKGINL 388
            +  S   NT  ++ E+ + KYG  I+    ++Q L++V   + +LNF    YV ++G   
Sbjct: 913  LMESNHQNT--SYGEFTTSKYGDDIEGIVRMDQFLIEVRELTEQLNF----YVQQRG--- 963

Query: 389  ATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRT 448
              TS +++  +      K +L+PELC    FP  LW K++ LPSIL RL+ +L A+ +R 
Sbjct: 964  -KTSAQSKARV------KIILIPELCFNFDFPGDLWIKAMFLPSILNRLHFMLHAEALRQ 1016

Query: 449  AVASEIGLGKVILDEKVEWPP--FNFGWKMKKLKEKYG 484
               + +GL + +    V++ P      W +++  + +G
Sbjct: 1017 RFNTYLGL-QHLPQNGVDYRPKLLEIDWSLRRNVDSHG 1053


>gi|80979101|gb|ABB54753.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  209 bits (532), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 158/510 (30%), Positives = 239/510 (46%), Gaps = 72/510 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK   T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLCATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEA-GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
             F PR  W+PP   +P  +     E  GF     N +   NL++L+ +    ++K  C D
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREKPGFA----NMIGPHNLRDLALDDEESLVKGNCSD 1320

Query: 901  LDCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
            +           N QS    +         V   +I +K IAD +EAL+G  +   G + 
Sbjct: 1321 IKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQH 1380

Query: 948  ALLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFK 991
            A   + +  +      K +  + N E        +++   +DGF       E ++ Y FK
Sbjct: 1381 AFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFK 1440

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D+ YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSA
Sbjct: 1441 DRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSA 1500

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------ 1104
            LVNN   A + VR   H F    +  L E I +FV  Q ++     N  + L+E      
Sbjct: 1501 LVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEADVQP 1560

Query: 1105 -----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                                         GE + + +++VPK LGD+ E++  AIYLD  
Sbjct: 1561 TPLDLDDELELPHANKCISQEAEQGVPPKGEFNMSTNVDVPKTLGDVLEALIAAIYLDC- 1619

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVE 1195
              L   W+V + + + E++  + ++P +PIR+L+E +     FS P    D   V     
Sbjct: 1620 RDLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIEHKHAKPVFSSPIMEGDTLMVSCQFT 1679

Query: 1196 VFGKG-SYKGIGRNYCIAKCTAAKCALKHL 1224
               K     G G N   AK +AAK AL+ L
Sbjct: 1680 CMEKSIKVYGFGSNKNQAKLSAAKHALQLL 1709



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 229/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              + ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SSVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 79/186 (42%), Gaps = 40/186 (21%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL--------- 825
            N    S + LE IGD+ L + I+ +++     ++ G L+ LRS  V+N  L         
Sbjct: 1457 NRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRL 1516

Query: 826  --FKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF---PASLWNCLSLP 880
              F L + +   E++  +KF         G+ V  Y+   L EA     P  L + L LP
Sbjct: 1517 HFFILAENEKLSETI--SKFVNFQE--SQGHRVTNYVHILLEEADVQPTPLDLDDELELP 1572

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIG 937
            +               KC+  +       Q V P   +N+ T   +P K++ D +EALI 
Sbjct: 1573 H-------------ANKCISQEAE-----QGVPPKGEFNMSTNVDVP-KTLGDVLEALIA 1613

Query: 938  AYLIEC 943
            A  ++C
Sbjct: 1614 AIYLDC 1619


>gi|356504203|ref|XP_003520888.1| PREDICTED: endoribonuclease Dicer homolog 1-like [Glycine max]
          Length = 1944

 Score =  209 bits (532), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 153/449 (34%), Positives = 232/449 (51%), Gaps = 66/449 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1420 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALSKGLQSYIQAD 1479

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  +P + E         +SL++            E+ +  I++    +
Sbjct: 1480 RFAP-SRWAAPG-VLPVFDEDT---KDGESSLFD-----------QERSISKIER----M 1519

Query: 902  DCTVDMNVQSVVPYNLVTQHS----IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            DC  +     +    L +  S    +  K++AD VEALIG Y +E G   A   M W+G+
Sbjct: 1520 DCHTNGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGGKNAANHLMKWIGI 1579

Query: 958  KV-IPPVTNPESK---HLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
            ++   P T   +K   ++ D +L    FD  E ++N +F D+  L++++THAS   + ++
Sbjct: 1580 QIEFDPDTMECTKKPFNVPDSILRSVDFDALEGALNMKFNDRGLLVESITHASRPSSGVS 1639

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+   H   
Sbjct: 1640 -CYQRLEFVGDAVLDHLITRHLFFTYTNLPPGRLTDLRAAAVNNENFARVAVKHNLHVHL 1698

Query: 1072 KHLSPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFE 1124
            +H S  L + I+ FVK +Q E      N F L        G+C      + PK LGD+ E
Sbjct: 1699 RHGSSALEKQIKEFVKEVQVELSKPGFNSFGL--------GDC------KAPKVLGDIVE 1744

Query: 1125 SVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFS 1179
            S+AGAI+LDSG     VWKV+  ++   +     ++P  P+REL E   + A     + S
Sbjct: 1745 SIAGAIFLDSGRDTTVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEGLEYKAS 1802

Query: 1180 KPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +   LA       TVEVF  G   G  +N
Sbjct: 1803 RIGNLA-------TVEVFIDGVQVGAAQN 1824



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 45/147 (30%), Positives = 74/147 (50%), Gaps = 15/147 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  ++   + FP +        Y ++ +YY  KYG+ +   +QPL+     S   
Sbjct: 1269 FYVDSICYDMSAENSFPRKEGYLGPLEYSSYADYYKQKYGVNLIYKQQPLIRGRGVSYCK 1328

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
            N L+PR+ + +G      SEE   +          L PELCL+HP P SL R +  LPSI
Sbjct: 1329 NLLSPRFEHSEG-----ESEEIHDKTYYVF-----LPPELCLVHPLPGSLVRGAQRLPSI 1378

Query: 434  LYRLNALLLADEIRTAVASEIGLGKVI 460
            + R+ ++LLA +++  +   +   K++
Sbjct: 1379 MRRVESMLLAVQLKNMINYPVLASKIL 1405



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 76/161 (47%), Gaps = 16/161 (9%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N+P + ++ G 
Sbjct: 880  LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFE-NLEGP 938

Query: 60   KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               +  LA +   + AC+ L+E+    + L+P  K      E  E    +T E +  P +
Sbjct: 939  ICSSMRLAQQAVCLAACKKLHEMGAFTDMLLP-DKGSGGEREKDE----QTDEGDPLPGT 993

Query: 120  TKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
             + R+FY + +A              C        Y+YAVK
Sbjct: 994  ARHREFYPEGVADILKGEWILSEKDACNNYKLLHLYMYAVK 1034



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/168 (26%), Positives = 72/168 (42%), Gaps = 29/168 (17%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1402 SKILGALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1458

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLME- 1104
            +N++    A+  G   + +          +PG+  V     K    + F   +    +E 
Sbjct: 1459 SNMVLYQYALSKGLQSYIQADRFAPSRWAAPGVLPVFDEDTKDGESSLFDQERSISKIER 1518

Query: 1105 ------GECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                  G  DE ED E+            K L D+ E++ G  Y++ G
Sbjct: 1519 MDCHTNGYEDEMEDGELESDSSSYRVLSSKTLADVVEALIGVYYVEGG 1566


>gi|302765743|ref|XP_002966292.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
 gi|300165712|gb|EFJ32319.1| hypothetical protein SELMODRAFT_86110 [Selaginella moellendorffii]
          Length = 1730

 Score =  209 bits (531), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 143/445 (32%), Positives = 234/445 (52%), Gaps = 47/445 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD++LK+ ++  L+  +P  HEG+L+ +R + VSN  L++    K     + 
Sbjct: 1188 SYERAELLGDAYLKWVVSRRLFIKHPRKHEGQLTRMRQQTVSNMVLYEFAISKSLQSYIQ 1247

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            + +F P   W  PG  VP   +  L ++           +P   E          +++ +
Sbjct: 1248 SDRFAP-SRWAAPG--VPPVFDEDLKDSNLDN---EAAEVPKASEHEERSTKSSGEEEVL 1301

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            D   +++        ++  +   +  K++AD VEALIG Y +E G + A  FM+W+ +  
Sbjct: 1302 DDSTSLE---DGEAEWDSSSYRVLSSKTLADVVEALIGVYYVEGGTKAAAHFMNWISI-- 1356

Query: 960  IPPVTNPESK--------HLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
              P+   E++         + D +++   F+K E +I Y+F+ KS L++A++HAS   + 
Sbjct: 1357 --PIDYDEAEANAARAGCSVPDSVMNSIDFEKLELAIGYKFQMKSVLVEAISHASR-PSA 1413

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEF+GDA+LD+LITR+L+   +   PG LTDLR+A VNN  FA ++V+  FH 
Sbjct: 1414 GVPCYQRLEFVGDAVLDHLITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSFHL 1473

Query: 1070 FFKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
              +H S  L   I+ FVK +Q+E D      + +         D + PK LGD+ ES+AG
Sbjct: 1474 HLRHGSSALEAQIKDFVKDIQSELDKPGINSFGI--------GDFKAPKVLGDILESIAG 1525

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----RFSKPEK 1183
            AI+LD+G++ D VWKV+  +++  +     ++P  P+REL E   + A     R S+   
Sbjct: 1526 AIFLDTGLAADEVWKVFERLLEPMV--TPDTLPVHPVRELQERCQQQAEGLEYRASREGS 1583

Query: 1184 LADGRRVRVTVEVFGKGSYKGIGRN 1208
            +A       TVEVF  G   G  +N
Sbjct: 1584 IA-------TVEVFVDGVQIGCAQN 1601



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/150 (31%), Positives = 74/150 (49%), Gaps = 22/150 (14%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  +M  +   S FP +        Y ++ +YY  KYG+++    QP+L     S   
Sbjct: 1040 FYVESVMREMTAESPFPRKEGYLGSVEYSSYADYYEQKYGVRLHCRHQPMLRCRGVSHCK 1099

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ---LLVPELCLIHPFPASLWRKSVSL 430
            N L+PR+       L  +SEE        L  K    +L PE+CL+HP P  L R +  L
Sbjct: 1100 NLLSPRF------KLLESSEE--------LSDKTYYVMLPPEICLVHPLPGCLVRGAQRL 1145

Query: 431  PSILYRLNALLLADEIRTAVASEIGLGKVI 460
            PS++ R+ ++LLA +++  +   I   KV+
Sbjct: 1146 PSVMKRVESILLAVQLKHEIGFPIPAAKVL 1175



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 29/93 (31%), Positives = 56/93 (60%), Gaps = 1/93 (1%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           +++A+ +++ YC++LPSD ++ L P   +++    D + F+C +RLP N+P++ S  G  
Sbjct: 670 LNSAVGLIHFYCSQLPSDRYSILKPEFVLTKHSTGDVVYFSCKLRLPSNAPVE-SFDGPV 728

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVT 93
             T   A +   +EAC+ L+E+    + L+P T
Sbjct: 729 CSTMKGAQQAVCLEACKKLHEMAAFTDMLLPDT 761



 Score = 42.0 bits (97), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 34/56 (60%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            P  +RLE +GD+ L + IT +L+  Y ++  G+L+ LR+  V+N N  ++  +  F
Sbjct: 1416 PCYQRLEFVGDAVLDHLITRYLFFRYQDLPPGRLTDLRAAAVNNENFARISVKHSF 1471


>gi|357465903|ref|XP_003603236.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355492284|gb|AES73487.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 1758

 Score =  208 bits (530), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 154/452 (34%), Positives = 206/452 (45%), Gaps = 50/452 (11%)

Query: 753  HGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKL 812
            +G   N   PS    +    L      S +RLE +GDS LKYA++  LY  YP  HEG L
Sbjct: 1116 NGHTDNFKIPSSLVLEALTTLRCCEKFSMERLELLGDSVLKYAVSCHLYLKYPKKHEGHL 1175

Query: 813  SHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPAS 872
            S LR   V N  L KLG        +  + FEPR  W+ PG      + T   + G    
Sbjct: 1176 SSLRQWAVRNSTLHKLGTDHNLQGYIRDSAFEPR-RWIAPGQ---DCIHTVPCDCG---- 1227

Query: 873  LWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHS--IPDKSIAD 930
                              LE ++   V LD         VV   L  +    +  K+IAD
Sbjct: 1228 ------------------LETLE---VPLDVKFHTEDPKVVVGKLCDRGHRWMCSKTIAD 1266

Query: 931  CVEALIGAYLIECGPRGALLFMSWLGL------KVIPPVTNPESKHLSDVLLDGFDKFEE 984
            CVEALIGAY +  G   +L  M WLG+       ++       S H     ++     E 
Sbjct: 1267 CVEALIGAYYVGGGLIASLHMMKWLGIDSGLEPSMVDKAITAASLHTYTPKVNEIASLEA 1326

Query: 985  SINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGT 1044
             I Y F  K  L++A TH S   +    CY+RLEFLGD++LD LIT HL++      PG 
Sbjct: 1327 KIGYEFSVKGLLVEATTHLSESEHGTGCCYERLEFLGDSVLDLLITWHLFQSHTEIDPGE 1386

Query: 1045 LTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLME 1104
            LTDLRSA VNN  FA  AVR   H    H S  L   I  + K+ +E            E
Sbjct: 1387 LTDLRSASVNNENFAQAAVRRNLHQHLLHSSGLLQSQILEYAKVISEP-----------E 1435

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSP 1164
                  + I+ PKALGDL ES+AGAI +D+ + LD VWKV+  ++   +    + +P  P
Sbjct: 1436 DNAVPLQGIKAPKALGDLVESIAGAILIDTKLDLDQVWKVFNPLLSPIVTPEKLELP--P 1493

Query: 1165 IRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
            +REL++L      F K +   D +     VE+
Sbjct: 1494 LRELMQLSDSLGYFVKVKVSHDKKGTMEHVEI 1525



 Score = 41.6 bits (96), Expect = 2.5,   Method: Compositional matrix adjust.
 Identities = 37/170 (21%), Positives = 72/170 (42%), Gaps = 28/170 (16%)

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY-----QTFEEY 347
            N V D S  +D V +  +  +     + + +++ N    S F   ++        TF +Y
Sbjct: 962  NCVVDVSSVKDNVALAIHTGKV----YCIIDVVDNSSAESPFDGNSDKSGAEDKMTFTQY 1017

Query: 348  YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
            +  +YG+ +++ EQPLL +       N           +NL    EE   +    +G   
Sbjct: 1018 FQKRYGITLRHPEQPLLRLKQGHNAHNLF---------LNLP---EEDGGDKSSQVGPVA 1065

Query: 408  LLVP-------ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
              VP       EL  +      +++    LPS++YR+ +L+L+ ++R  +
Sbjct: 1066 PKVPVHVHIPSELLCLLDVKRDVYKSMYLLPSLMYRIESLMLSSQLRAEI 1115



 Score = 41.6 bits (96), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 25/107 (23%), Positives = 55/107 (51%), Gaps = 7/107 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           +D+++ ++N+YC +LP D ++   P      ++    +   C + LP N+  + ++ G  
Sbjct: 613 LDSSVSLINQYCEKLPRDKYSSAKPNFVSLPMEGGGHV---CKLILPPNAAFQ-TLVGPS 668

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK---EFINLYENTE 104
                 A  +  +EAC+ L+++  L++ L+P  +   E  N+ +N E
Sbjct: 669 GKDVRQAKTLVCLEACKKLHQMGALNDHLVPFVEDPLEADNIIKNKE 715


>gi|80979131|gb|ABB54768.1| Dicer-2 [Drosophila santomea]
          Length = 1719

 Score =  208 bits (530), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 155/500 (31%), Positives = 237/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKXISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E    A +   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWRENPXLAGM---VGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNSFVEGCRANAQTHHAGADFSTEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QPTTLDLDDDLDMTDLKNALKSISHEEEQNYPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E++  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELQEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  140 bits (353), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 125/479 (26%), Positives = 218/479 (45%), Gaps = 54/479 (11%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P    + ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--XXNSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  DTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHN 280
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW  +T       
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 281  DVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT 340
                 + +++++     E  F   +V  WY N FE     V ++   + P S+   + + 
Sbjct: 854  AENSSVHQRKQQTAPXPED-FEGKIVSQWYAN-FEHKRMLVTKVHRELTPLSLM-EQNHQ 910

Query: 341  YQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
             +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +      
Sbjct: 911  DKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKSRA-- 964

Query: 398  EIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
                    K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + + L
Sbjct: 965  --------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTYLNL 1015


>gi|80979115|gb|ABB54760.1| Dicer-2 [Drosophila simulans]
          Length = 1714

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 156/509 (30%), Positives = 238/509 (46%), Gaps = 70/509 (13%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  W+PP   +P  +     E        N +   NL++L+ +    ++K  C D+
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREK---PEFANMIGPHNLRDLALDDEESLVKGNCSDI 1321

Query: 902  DCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                       N QS    +         V   +I +K IAD +EAL+G  +   G + A
Sbjct: 1322 KYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQHA 1381

Query: 949  LLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKD 992
               + +  +      K +  + N E        +++   +DGF       E ++ Y FKD
Sbjct: 1382 FKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKD 1441

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
            + YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSAL
Sbjct: 1442 RRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSAL 1501

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME------- 1104
            VNN   A + VR   H F    +  L E I +FV  Q ++     N  + L+E       
Sbjct: 1502 VNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEADVQPT 1561

Query: 1105 ----------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                                        GE + + +++VPK LGD+ E++  AIYLD   
Sbjct: 1562 PLDLDDELELPHANKCISQKAEQGVPPKGEFNISTNVDVPKTLGDVLEALIAAIYLDC-R 1620

Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
             L   W+V + + + E++  + ++P +PIR+L+E +     FS P    D   V      
Sbjct: 1621 DLQRTWEVIFRLFEPELQEFTRNMPINPIRQLIEHKHAKPVFSSPIMEGDTLMVSCQFTC 1680

Query: 1197 FGKG-SYKGIGRNYCIAKCTAAKCALKHL 1224
              K     G G N   AK +AAK AL+ L
Sbjct: 1681 MEKSIKVYGFGSNKNQAKLSAAKHALQLL 1709



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 229/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKSEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              + ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SSVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076



 Score = 40.4 bits (93), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 49/186 (26%), Positives = 78/186 (41%), Gaps = 40/186 (21%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL--------- 825
            N    S + LE IGD+ L + I+ +++     ++ G L+ LRS  V+N  L         
Sbjct: 1457 NRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRL 1516

Query: 826  --FKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGF---PASLWNCLSLP 880
              F L + +   E++  +KF         G+ V  Y+   L EA     P  L + L LP
Sbjct: 1517 HFFILAENEKLSETI--SKFVNFQE--SQGHRVTNYVHILLEEADVQPTPLDLDDELELP 1572

Query: 881  NLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVP---YNLVTQHSIPDKSIADCVEALIG 937
            +               KC+          Q V P   +N+ T   +P K++ D +EALI 
Sbjct: 1573 H-------------ANKCISQKAE-----QGVPPKGEFNISTNVDVP-KTLGDVLEALIA 1613

Query: 938  AYLIEC 943
            A  ++C
Sbjct: 1614 AIYLDC 1619


>gi|80979129|gb|ABB54767.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  208 bits (529), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAXMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNXFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (366), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 218/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F   LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDXLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|194755862|ref|XP_001960198.1| GF13246 [Drosophila ananassae]
 gi|190621496|gb|EDV37020.1| GF13246 [Drosophila ananassae]
          Length = 1727

 Score =  207 bits (528), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 147/477 (30%), Positives = 228/477 (47%), Gaps = 95/477 (19%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + +++L   Y + +EG L+ ++SK VSN NL     +      + ++
Sbjct: 1220 ERLEMLGDSFLKMSGSLYLANRYADWNEGTLTQVKSKLVSNRNLLYCLSETDIPTRISSS 1279

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWN-------CLSLPNLKELS-------- 886
             F P+  W+PPG  +P+ +           +LWN        +   NL++L+        
Sbjct: 1280 LFTPKYTWIPPGVSLPRNV----------LALWNNKPDVAKLVGPHNLRDLTLTDEESLI 1329

Query: 887  ----PEKVLEIIKQKC--------VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEA 934
                 E  L      C         D D + ++N         + + +I DK +AD +EA
Sbjct: 1330 TGTCSESTLSTFMDGCRKNMSSHHADTDFSAELNF-------CIGRANIADKVVADTLEA 1382

Query: 935  LIGAYLIECGPRGALLFMSWLGL---KVIPPVTNPESKHLS-------------DVLLDG 978
            L+G  +   G       + + G+    +  P+T      L              D  L  
Sbjct: 1383 LLGVVVKNYGLTHGFRMLEYFGICKADIGKPLTQLLDLRLGGANMRTNVSTTEIDSFLIN 1442

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
                E+++ Y FKD+ YLLQA+TH SY  N +T CYQ+LEF+GDAILD+LI+ +++E+  
Sbjct: 1443 HANLEQNLGYTFKDRGYLLQALTHPSYPTNRITGCYQQLEFIGDAILDFLISGYIFENNT 1502

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ--------- 1089
              +PG LTDLRSALVNN   A + VR   H F    +  L E I  FV+ Q         
Sbjct: 1503 KMTPGQLTDLRSALVNNTTLACICVRHKIHLFILAENALLSEAIASFVQFQETQNHRVTN 1562

Query: 1090 ------AENDFT---LNQEYYLME----------------GECDEAEDIEVPKALGDLFE 1124
                   END T   ++ E   ME                G+ + +++++VPKALGD+ E
Sbjct: 1563 HVRILLEENDTTPLDVDGEVKSMEIDETTESEENNGVPTKGDYNMSQNVDVPKALGDVLE 1622

Query: 1125 SVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP 1181
            ++  A+YLD    L   W+V Y + K EI+  + +VP +PIR+L E +  +  +S P
Sbjct: 1623 ALIAAVYLDC-RDLHRTWQVIYNLFKPEIKEFTRNVPINPIRQLNEHKLASPIYSGP 1678



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 143/552 (25%), Positives = 244/552 (44%), Gaps = 70/552 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-------DDSIMFTCSIRLPINSPLKRS 55
            NA+ +++RYC  LPSD F  + P I + E KE               SI LP+ S LK +
Sbjct: 577  NALILLHRYCQSLPSDAFGFVVPWINLVEPKERVKRFGKSAEYKQVVSIVLPLTSSLKDT 636

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINLYENTEPVVPKTPEIE 114
            +  + M     A   AA  AC++LYEL EL    +P+T KE +    +      K    +
Sbjct: 637  IYSYPMDCVKSAKVSAAFNACKLLYELGELGEKFLPITAKERVAAIADVHFEHWKKYGDD 696

Query: 115  TYPDSTKRRQFYHKRMASC---FTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGRKIH 170
                S ++          C   F +  P V   CY Y + ++     P  E+N     ++
Sbjct: 697  VTKTSKEKENQVRTYRTGCPEEFMDAMPRVGEVCYAYEIFLE-----PHFERNDYTEHVY 751

Query: 171  PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIFMDY 229
                +P+  A+L    +P++   P+F   G++ V +    + +VL S+  +     F   
Sbjct: 752  DNLQTPRNYALLLRNKLPRLAEMPLFCNQGKLHVRVASEPREIVLDSDIKVELLQQFHVT 811

Query: 230  LFTKVLKLKKYLMLFDPNCSENSYFIVP-TVSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
            +F  +L++ +   +FD    ENSY +VP  V  ++  VIDW  +T          Q +PE
Sbjct: 812  IFRSILRIWQPFFVFDRLARENSYLVVPLAVGAAKAEVIDWPLVT--------KFQSLPE 863

Query: 289  KERENFVFDESK-------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
             ++ +    +         F   +V  WY N +E     V ++  ++ P S +  + +  
Sbjct: 864  VKKSSVQQRKEAPPPCPEDFEGKIVTQWYSN-YEEKRMLVTKVHRDLTPYS-YMEKNHQD 921

Query: 342  QTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +T+  +   KY   I ++   +Q L++V   + +LNF    YV ++G + A +       
Sbjct: 922  KTYYTFTMSKYSNHIGDVVHKDQFLIEVRELTEQLNF----YVQQRGKSSAQSKARA--- 974

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK 458
                   K +L+PEL     FP  +W K + LPSIL RL+ LL A+ +R    + +GL  
Sbjct: 975  -------KVVLIPELTFNFDFPGDVWLKMIFLPSILRRLHFLLHAEALRKRFNAYLGLQH 1027

Query: 459  VILDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTE- 516
            + ++     P P +  W +K+  +  G       + + DD    D KE  S +  + T+ 
Sbjct: 1028 LPINGVDYKPRPVDIDWSLKRNVDPLG-------NAVADD----DFKEQRSLLEPMKTKP 1076

Query: 517  ----IAKVEIVD 524
                +AK+EI D
Sbjct: 1077 LEESLAKLEITD 1088


>gi|80979117|gb|ABB54761.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  146 bits (368), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|80979121|gb|ABB54763.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|80979127|gb|ABB54766.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNEPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|195487840|ref|XP_002092062.1| Dcr-2 [Drosophila yakuba]
 gi|194178163|gb|EDW91774.1| Dcr-2 [Drosophila yakuba]
          Length = 1730

 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1218 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1277

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1278 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1334

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1335 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1391

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1392 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1451

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1452 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1511

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1512 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1571

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1572 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1631

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1632 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1690

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1691 SCQFTCMEKSIKVYGFGSNK 1710



 Score =  148 bits (374), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 220/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 577  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 634

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 635  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 689

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 690  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 744

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 745  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 804

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW    KF  L  
Sbjct: 805  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILDADQQKCIDWPLVTKFQRLPQ 864

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 865  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 917

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 918  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 973

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 974  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1023

Query: 454  IGL 456
            + L
Sbjct: 1024 LNL 1026


>gi|80979125|gb|ABB54765.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (527), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (367), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEXKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|80979123|gb|ABB54764.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTDLKNALKSISHEEEKNDPPKGBFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILXADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|80979119|gb|ABB54762.1| Dicer-2 [Drosophila yakuba]
          Length = 1719

 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 156/500 (31%), Positives = 236/500 (47%), Gaps = 85/500 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1207 ERLEILGDSFLKLSATLYLANKYSDWNEGTLTQVKSKLVSNRNLLYCLSDTDIPKRISTI 1266

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  WLPP   +P  +     E      L   +   NL++L+  +   ++   C D+
Sbjct: 1267 LFTPRYTWLPPSISLPHNVLALWREN---PELAVMVGPHNLRDLALGEEESMVSGHCSDI 1323

Query: 902  D----------------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
            +                   D + +      LVT   IPDK IAD +EAL+G  +   G 
Sbjct: 1324 NYNNFVEGCRANAQSHHAGADFSAEVNFCVGLVT---IPDKVIADTLEALLGVIVKNYGL 1380

Query: 946  RGALLFMSWLGL---KVIPPVTN------PESKHLSDV---LLDGF----DKFEESINYR 989
            + A   + +  +    +  P+T         SK  ++V    +DGF       E ++ Y 
Sbjct: 1381 QHAFRMLEYFKICRADIGKPLTQLLDLELGGSKMRANVNTTEIDGFLINHHHLENNLGYT 1440

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD+ YLLQA+TH S+  N +T CYQ LEF+GDAILD+LI+ +++E+    +PG LTDLR
Sbjct: 1441 FKDRGYLLQALTHPSFPTNRITGCYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLR 1500

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME---- 1104
            SALVNN   A + VR   H F    +  L E I +FV+ Q ++     N    L+E    
Sbjct: 1501 SALVNNTTLACICVRHRLHFFILAENAKLAESIAKFVQFQESQRHRVTNHVRILLEEADV 1560

Query: 1105 ----------------------------------GECDEAEDIEVPKALGDLFESVAGAI 1130
                                              G+ + + +++VPKALGD+ E++  AI
Sbjct: 1561 QSTTLDLDDDLDMTELKNALKSISHEEEKNDPPKGDFNMSTNVDVPKALGDVLEALIAAI 1620

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            YLD    L   W+V + + K E+E  + +VP + IR+L E +  N  FS P    D   V
Sbjct: 1621 YLDC-RDLQRTWEVIFNLFKPELEEFTRNVPINAIRQLTEHKHANPVFSSPIIDQDNMMV 1679

Query: 1191 RV-------TVEVFGKGSYK 1203
                     +++V+G GS K
Sbjct: 1680 SCQFTCMEKSIKVYGFGSNK 1699



 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 131/483 (27%), Positives = 219/483 (45%), Gaps = 62/483 (12%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDD-SIMF--------TCSIRLPINSPLK 53
            +A+ +++RYC  +P+D F  + P   IS ++ED   I+F          SI+LP+NS LK
Sbjct: 566  SALILLHRYCQSMPTDAFGFVIP--WISSLQEDQRKILFGDCARSKEVVSIQLPLNSKLK 623

Query: 54   RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE- 112
             ++    M +   A   AA +AC++LY+L EL+   +P+T     L E    +     E 
Sbjct: 624  NTIYSDPMDSVKAAKVSAAFKACKLLYQLGELNERFLPIT-----LKERVAAIADVHFEH 678

Query: 113  ---------IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQ 162
                          D+ K  + Y     + F + RP V   CY Y + ++     P  E 
Sbjct: 679  WKKYGDDVTATVRKDAPKIVRNYKTDCPAEFYDARPRVGELCYAYEIFLE-----PQFES 733

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLS 221
                  ++    +P+  AIL    +P++   P+F+  G++ V +      VV+ S E L 
Sbjct: 734  CDYTEHMYVNLRTPRNYAILMRNKLPRLAEMPLFSNQGKLHVRVANEPLKVVIQSSEQLE 793

Query: 222  NTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDW----KFMTLIS 276
                F   +F  +LK+ +   + D    ENSY +VP +  + +Q  IDW    KF  L  
Sbjct: 794  LLHQFHGMVFRDLLKIWQPFFVLDRRSKENSYLVVPLILGADQQKCIDWPLVTKFQRLPQ 853

Query: 277  EHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
              H+ V Q      ++        F   +V  WY N FE     V ++   + P S+   
Sbjct: 854  AEHSSVHQ-----RKQQTAPRPEDFEGKIVSQWYAN-FEQKRMLVTKVHRELTPLSLM-E 906

Query: 337  RTNTYQTFEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
            + +  +T+ E+   KYG  I ++   ++ +++V   + +LNF    YV  +G + A +  
Sbjct: 907  QNHQDKTYYEFTMSKYGNHIGDVVHKDKFMIEVRELTDQLNF----YVQNRGKSSAKSKA 962

Query: 394  ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
                        K +L+PELC  + FP  LW K + LPSIL R++ LL A+ +R    + 
Sbjct: 963  RA----------KIILIPELCFNYEFPGDLWLKLIFLPSILRRMHFLLHAEALRKRFNTY 1012

Query: 454  IGL 456
            + L
Sbjct: 1013 LNL 1015


>gi|16215719|dbj|BAB69959.1| double-strand-specific ribonuclease [Drosophila melanogaster]
          Length = 1722

 Score =  207 bits (526), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 169/576 (29%), Positives = 263/576 (45%), Gaps = 122/576 (21%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K V  E  +P +  E       S+ +D  FD +            RLE +GDSFLK +
Sbjct: 1177 LQKTVSKEHITPAEQGEFLAAITASSAADV-FDME------------RLEILGDSFLKLS 1223

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   Y + +EG L+ ++SK VSN NL          +++   +F PR  WLPPG  
Sbjct: 1224 ATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTIQFTPRYTWLPPGIS 1283

Query: 856  VPKYLETALIEAGFPASLWN-------CLSLPNLKELSPEKVLEIIKQKCVDLD------ 902
            +P  +           +LW         +   NL++L+      ++K  C D++      
Sbjct: 1284 LPHNV----------LALWQENPEFAKIIGPHNLRDLALGDEESLVKGNCSDINYNRFVE 1333

Query: 903  ----------CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
                         D + +      LVT   I +K IAD +EAL+G  +   G + A   +
Sbjct: 1334 GCRANGQSFYAGADFSSEVNFCVGLVT---ILNKVIADTLEALLGVIVKNYGLQHAFKML 1390

Query: 953  SWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKDKSYL 996
             +  +      K +  + N E        +++   +DGF       E+++ Y FKD+ YL
Sbjct: 1391 EYFKICRADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYL 1450

Query: 997  LQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056
            LQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSALVNN 
Sbjct: 1451 LQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNT 1510

Query: 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ-AENDFTLNQEYYLME----------- 1104
              A + VR   H F    +  L E+I +FV  Q ++     N    L+E           
Sbjct: 1511 TLACICVRHRLHFFILAENAKLSEIISKFVNFQESQGHRVTNYVRILLEEADVQPTPPDL 1570

Query: 1105 ---------------------------GECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
                                       GE   + +++VPKALGD+ E++  A+YLD    
Sbjct: 1571 DDELDMTELPHANKCISQEAEKGVPPKGEFSMSTNVDVPKALGDVLEALIAAVYLDC-RD 1629

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV----- 1192
            L   W+V + + + E++  +  VP + IR+L+E +     F  P  + +G  V V     
Sbjct: 1630 LQRTWEVIFNLFEPELQEFTRKVPINHIRQLVEHKHAKPVFGSP--IVEGGTVMVSCQFT 1687

Query: 1193 ----TVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
                T++V+G GS K        AK +AAK AL+ L
Sbjct: 1688 CMEKTIKVYGFGSNKD------QAKLSAAKHALQQL 1717



 Score =  130 bits (326), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 208/474 (43%), Gaps = 43/474 (9%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
            +NA+ I++RYC  +P+D F  + P   + +  E D I           SI +P+N  L+ 
Sbjct: 569  NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 628

Query: 55   SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
            ++    M     A   AA +AC+VLY L EL+   +P T KE +       +E+      
Sbjct: 629  TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 688

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
                     D +K R  Y       F +  P V   CY Y + ++     P  E  +   
Sbjct: 689  SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 742

Query: 168  KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
             ++    +P+  AIL    +P++   P+F+  G++ V +      V++ + E L     F
Sbjct: 743  HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 802

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQD 285
               +F  +LK+     + D    ENSY +VP +    EQ   DW+ MT           +
Sbjct: 803  HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 862

Query: 286  IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
            + ++E++     E  F   +V  WY N  +P    V ++   + P S +  +    +T+ 
Sbjct: 863  VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 918

Query: 346  EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
            E+   KYG +I ++   ++ +++V   + +L F    YV+ +G          +   +  
Sbjct: 919  EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRG----------KFNAKSK 964

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
               K +L+PELC    FP  LW K + LPSIL R+  LL A+ +R    + + L
Sbjct: 965  AKMKVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNL 1018


>gi|189908862|gb|ACE60552.1| dicer-like protein 2 [Brassica rapa]
          Length = 1392

 Score =  206 bits (525), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 148/407 (36%), Positives = 212/407 (52%), Gaps = 58/407 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+ +Y   HEG LS ++ + +SN  L K G  +     +    F
Sbjct: 996  LETLGDSFLKYAVCQHLFQSYDTHHEGLLSTIKDEMISNVTLCKFGCNQKLQGFIRNECF 1055

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   AL+                   LS  + + I ++       
Sbjct: 1056 EPK-GWMVPGQSSAAY---ALVN----------------DYLSESRNMYIARR------- 1088

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
               MN++               KS+AD VEALIGAYL E G   AL FM+W+G+KV    
Sbjct: 1089 ---MNLKR--------------KSVADVVEALIGAYLSEGGELAALTFMNWVGIKVDFTT 1131

Query: 964  TNPESK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  + +  +    L      E  +NY+FKDKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1132 TMIQREPSIQAEKLVNVRYMESLLNYKFKDKSLLVEALTHGSYMIPEIPRCYQRLEFLGD 1191

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY +    SPG LTD+RSA VNN  +A +AV+   H    H S  LH+ I
Sbjct: 1192 SVLDYLITKHLYGEYPNLSPGLLTDMRSASVNNECYAQVAVKSNLHKHVLHASHDLHKHI 1251

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F   +    ++       +I  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1252 SRTV-----SEF---ERLSSVQSSFGWESEIAFPKVLGDVIESLAGAIHVDSGYNKEVVF 1303

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF--SKPEKLADG 1187
                 ++   I   +V +   P+REL EL  + A+F  SK +   +G
Sbjct: 1304 ACIKPLLGCMITPETVKL--HPVRELTEL-CQKAQFELSKVKGFENG 1347



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 102/472 (21%), Positives = 198/472 (41%), Gaps = 80/472 (16%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + +++ ++  YC+RLPSD + + AP     +I ED      C++ LP +  +K   V  +
Sbjct: 555 LSSSVSLIYFYCSRLPSDEYFKPAPRF---DIDEDQG---KCTLYLPKSCQVKEVRVQAN 608

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYP 117
           +   K    + A ++AC  L++   L + L+P  V KE          V  K  +I   P
Sbjct: 609 RNVLK----QTACLKACIQLHKAGALTDHLVPDMVLKE---------TVQQKLGKIHYDP 655

Query: 118 DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
           + +    ++   + S F+       T  + Y+++MK   P         R +H   +   
Sbjct: 656 EQS---SYFPPELVSQFS---AHSQTTYHFYSIRMKSEFP---------RNLHF-NDILL 699

Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELID-----KNVVLSEENLSNTL--IFMDYL 230
           G  +     I   C F +    G + V++  +      +N VL       TL  + +D+ 
Sbjct: 700 GTRVELEADIGNTC-FRLEDHLGTIGVTLSYVGAFDLTQNEVLLCRRFQITLFRVLLDHS 758

Query: 231 FTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM---TLISEHHNDVIQDIP 287
              +      L L D    +  Y +VP+  + +  +IDW  +    L S    +   D  
Sbjct: 759 VENLAAALDGLHLRDGVALD--YLLVPSTHEQKASLIDWGVLRSVNLTSNRPRERHVDCS 816

Query: 288 EKER------ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAE-IMTNVHPRSMFPSRTNT 340
            K+       ++ +F     ++A+V   +       Y Y    I++++H  S+   R + 
Sbjct: 817 AKDASCILHTKDGLFCTCVLQNALVYTPHNG-----YVYCTRGILSHLHANSILTKRKSG 871

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
             ++ EYY  ++ +++  +++PLL+  H     N L   ++ RK        +E  RE  
Sbjct: 872 DVSYMEYYEKRHEIRLNFVDEPLLNGRHIFTLHNHL---HMTRK-----KKEKEHDREFV 923

Query: 401 ESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 924 E-------LPPELCHVILSPISVDMIYSYKFMPSVMQRIESLLIAFNLKKSI 968



 Score = 43.1 bits (100), Expect = 0.95,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L Y IT  LY  YPN+  G L+ +RS  V+N
Sbjct: 1184 QRLEFLGDSVLDYLITKHLYGEYPNLSPGLLTDMRSASVNN 1224


>gi|330370549|gb|AEC12444.1| ribonuclease III family protein DCL3 [Gossypium hirsutum]
          Length = 1655

 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 164/486 (33%), Positives = 225/486 (46%), Gaps = 69/486 (14%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRS 817
            N   PS    +    L      S +RLE +GDS LKYA++  L+  YPN HEG+LS  RS
Sbjct: 1061 NIDIPSSMILEALTTLRCCESFSMERLELLGDSVLKYAVSCHLFLRYPNKHEGQLSARRS 1120

Query: 818  KQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCL 877
              V N  L KLG        +  + F+PR  W+ PG                        
Sbjct: 1121 LAVCNSTLHKLGTDHKIQGYIRDSAFDPR-RWVAPG------------------------ 1155

Query: 878  SLPNLKELSPEKVLEIIKQKC-VD-LDCTVDMNVQSVVPYNLVTQHS------IPDKSIA 929
                      ++VL  +  KC VD L+  +D   Q+  P   V +        +  K+I+
Sbjct: 1156 ----------QRVLRPVPCKCGVDSLEVPLDKKFQTEDPKVKVGKSCDRGHRWLCSKTIS 1205

Query: 930  DCVEALIGAYLIECGPRGALLFMSWLGLK------VIPPVTNPESKHLSDVLLDGFDKFE 983
            DCVEALIGAY +  G   AL  M WLG+       V+  V N  S   + V        E
Sbjct: 1206 DCVEALIGAYYLSGGLVAALHVMKWLGIDAELDPLVVAEVINQASLR-TYVPNYEIHMIE 1264

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
              + Y F  K +L +A+TH S   +    CYQRLEFLGD++LD LIT++LY       PG
Sbjct: 1265 SKVGYNFSVKFFLQEALTHESLHESY---CYQRLEFLGDSVLDLLITQYLYNHHTNIDPG 1321

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LTDLRSA VNN  FA +AVR   H   +H S  L   I  +V+   E+D T   +    
Sbjct: 1322 ELTDLRSASVNNENFAQVAVRHDLHKHLQHCSTLLSNQISEYVQSFTESDNTTRLD---- 1377

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
                     I+ PKALGDL ES+ GAI +D+ ++LD VW++   ++   +    + +P  
Sbjct: 1378 -------PSIKGPKALGDLVESIVGAILIDTNLNLDKVWRIVEPLLSPIVTPDKLELP-- 1428

Query: 1164 PIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY---KGIGRNYCIAKCTAAKCA 1220
            P REL EL      F K +    G  V   + +         +G  R+  +AK  AA C 
Sbjct: 1429 PFRELNELCDSLGYFIKEKCKNKGEVVHAELLLQLDHDLLVGEGFDRSRKVAKGKAASCL 1488

Query: 1221 LKHLKS 1226
            LK L++
Sbjct: 1489 LKDLEN 1494



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 24/94 (25%), Positives = 52/94 (55%), Gaps = 5/94 (5%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D+A+ ++++YC +LP D +    P    +  +     ++ C + LP+N+ ++ ++ G   
Sbjct: 585 DSAVSLIHKYCGKLPGDKYYTPKPNFQFTSSEG----LYKCKLTLPVNAAVQ-TIVGPPS 639

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
               LA ++  +EAC+ L+++  LD+ L P  +E
Sbjct: 640 RNSHLAKQLVCLEACKQLHQMGALDDHLTPSIEE 673



 Score = 48.9 bits (115), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 38/162 (23%), Positives = 74/162 (45%), Gaps = 19/162 (11%)

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT----YQTFEEYY 348
            N   D +  R+ VV+  +  +     + + E +++    S F    +T    +  F EY+
Sbjct: 903  NSSVDANSLRNTVVLAIHTGRI----YCIIEAVSDKTAESSFAETVDTVSSEFANFYEYF 958

Query: 349  SLKYGLQIQNLEQPLLDVDHTSCRLNFLT---PRYVNRKGINLATTSEETRREIRESLGK 405
              KY + +++  QPL+ +  +    N L       V+ K       +E+ R  +      
Sbjct: 959  YKKYNIVLKHPGQPLMLLKQSHNPHNLLVNFNDEGVSAKASQAGVVNEKPRFHVH----- 1013

Query: 406  KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIR 447
               + PEL L+   P S+ +    LPS+++RL +L+LA+++R
Sbjct: 1014 ---MPPELLLVLDVPVSVLKSLYLLPSLMHRLESLMLANQLR 1052


>gi|224141703|ref|XP_002324204.1| dicer-like protein [Populus trichocarpa]
 gi|222865638|gb|EEF02769.1| dicer-like protein [Populus trichocarpa]
          Length = 1492

 Score =  205 bits (522), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 153/456 (33%), Positives = 222/456 (48%), Gaps = 56/456 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  YPN HEG+LS  RS  V N  L KLG        ++
Sbjct: 943  SMERLELLGDSVLKYAVSCHLFLKYPNKHEGQLSSWRSGAVCNSTLHKLGTDCKVQGYIL 1002

Query: 840  ATKFEPRDNWLPPGYFVPKYLET-ALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
             + F+PR  W  PG    K + T A  + G      + L +P  ++   E  +  + + C
Sbjct: 1003 DSAFDPR-RWAAPG---QKSVRTPAPCKCGV-----DTLEVPLDRKFQTESAIVKVGKPC 1053

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                                    +  K+I+DCVE++IGAY +  G   A+  M W G+ 
Sbjct: 1054 DS------------------GHRWMGSKTISDCVESVIGAYYVSGGLIAAIHVMKWFGIN 1095

Query: 959  V-IPPVTNPESKHLSDVLL-----DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
              + P    E+   + +       D     E  + Y F  K  L +AMTHAS     +T 
Sbjct: 1096 AELDPSLISEAITSASLRSYIPKEDEIKSLESKLGYTFGVKFVLQEAMTHASIQEQGVTY 1155

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD LIT HLY+      PG LTDLRSA VNN  FA +AV+   +    
Sbjct: 1156 CYQRLEFLGDSVLDLLITWHLYQSHTDVDPGELTDLRSASVNNDNFAQVAVKQNLYTHLL 1215

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L   I  +V    E+D                 +  + PKALGDL ES+AGA+ +
Sbjct: 1216 HCSTLLQSQITEYVNSFHESD-----------------QGTKAPKALGDLIESIAGALLI 1258

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPE--KLADGRRV 1190
            D+  +LD VW+++  ++   +    + +P  P+REL+EL      F K +  K A+    
Sbjct: 1259 DTKFNLDGVWRIFKPLLSPIVTPEKLELP--PLRELVELCDSIGVFVKEKCTKKAEMVHA 1316

Query: 1191 RVTVEVFGK-GSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ++ V++  +  S +G  +N   AK  AA C LK L+
Sbjct: 1317 QLWVQLDNELLSGEGYEKNRKAAKGKAASCLLKKLQ 1352



 Score = 61.2 bits (147), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 88/454 (19%), Positives = 182/454 (40%), Gaps = 80/454 (17%)

Query: 46  LPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEP 105
           LP N+   +++ G     + LA ++  +EAC+ L+++  LD+ L+P      ++ E +E 
Sbjct: 493 LPPNAAF-QTLVGPTCRNQQLAKQLVCLEACKKLHQMGALDDHLLP------SVEEPSEI 545

Query: 106 VVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE-QNK 164
            V K+        +TKR++ +        +            +A K   +C I  +  + 
Sbjct: 546 AVVKSKSTSAGAGTTKRKELHGTACIHALSGSWGEKLDGATFHAYKFDFSCSIVSQIYSG 605

Query: 165 RGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTL 224
               I    +   G   L    + K+    I + CG V +    + K     E       
Sbjct: 606 FILLIESKLDDDVGNIELDLYLVAKIVKSSI-SSCGVVHLDAAQMTKAKRFQE------- 657

Query: 225 IFMDYLFTKV----------LKLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWK 270
            F + LF K+          L  K+  +L+ P+   N Y ++P    ++S ++   IDWK
Sbjct: 658 FFFNGLFGKLFTGSKSSREFLLQKETTLLWSPS---NMYLLLPLEPWSISSNDWCKIDWK 714

Query: 271 FMT-------------LISEHHNDVIQDIPEKERE--------------NFVFDESKFRD 303
            +              L +  ++     +P+  +               N + +    +D
Sbjct: 715 GIEACSSVVEYLKNSFLAARSYSGGGNPLPDNVQSSTIECNGTNLIHFANALVNVENIKD 774

Query: 304 AVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT---YQTFEEYYSLKYGLQIQNLE 360
            VV+  +  +     + + +++ +    S F    +    + T+ EY++ +YG+ + +  
Sbjct: 775 MVVLAIHTGRI----YSIVKVVNDSSAESAFEGNADNVTEFSTYTEYFNKRYGIVLMHPG 830

Query: 361 QPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL----LVPELCLI 416
           QPLL +  +    N L     N +G+ +  + +         +G+KQ     + PEL + 
Sbjct: 831 QPLLRLKQSHNPHNHLVN--FNDEGLLVCDSKDGM-------VGRKQQQHVHMPPELLIK 881

Query: 417 HPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
              P S+ +    +PS+++RL  L+LA ++R  +
Sbjct: 882 IDVPISVVKSIYLMPSLMHRLECLMLASQLRQEI 915


>gi|168010516|ref|XP_001757950.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162690827|gb|EDQ77192.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1662

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 152/459 (33%), Positives = 233/459 (50%), Gaps = 37/459 (8%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD++LK+ ++  L+  YP  HEG+L+ +R + VSN  L++    K     + 
Sbjct: 1123 SYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F P   W  PG  VP   +  + +           +   + E+  E+   ++K+   
Sbjct: 1183 ADRFAP-SRWAAPG--VPPVFDEDIKDGDDSDKSLKAEASREVVEIVSEEGEIVVKELST 1239

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +     D  ++     +      +  K++AD VEA IG Y +E G   A   M+W+G+ V
Sbjct: 1240 ESASMEDGEIEG----DSSAYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPV 1295

Query: 960  ----------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
                      I     PE+  LS   +D FD  E SI ++F+ +S L++A+THAS   ++
Sbjct: 1296 EFDDAEAELAIGGCEVPETVMLS---ID-FDSLEASIGHKFRKRSLLVEAITHASR-PSS 1350

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEF+GDA+LDYLITR L+       PG LTDLR+A VNN  FA +AV+  FH 
Sbjct: 1351 GVPCYQRLEFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHL 1410

Query: 1070 FFKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
              +H S  L   I+ FV  +Q E D      + L         D + PK LGD+ ES+AG
Sbjct: 1411 HLRHGSSALETQIRNFVNDIQTELDKPGVNSFGL--------GDFKAPKVLGDILESIAG 1462

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGR 1188
            A++LD+ +  D VWKV+  +++  +     ++P  P+REL E   + A   + +    G 
Sbjct: 1463 ALFLDACLETDHVWKVFEPLLQPMVT--PETLPMHPVRELQERCQQQAEALEYKASRAGN 1520

Query: 1189 RVRVTVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHLK 1225
                TVEV+  G   G  +N    +A+  AA+ AL  LK
Sbjct: 1521 --VATVEVYVDGVQIGSAQNAQKKMAQKLAARNALVILK 1557



 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 48/149 (32%), Positives = 76/149 (51%), Gaps = 16/149 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  +  ++   S FP +        Y ++ +YY  KYG+++   +QPLL     S   
Sbjct: 971  FYVDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYKQKYGVELVCKKQPLLRGRGVSHCK 1030

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+    G  L +          ++L K    +L PELCLIHP P SL R +  LP
Sbjct: 1031 NLLSPRFETSTGGTLDSL---------DALDKTYYVMLPPELCLIHPLPGSLVRGAQRLP 1081

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            S++ R+ ++LLA +++  +   I   KV+
Sbjct: 1082 SVMRRVESMLLAIQLKHQIDYPIAASKVL 1110



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 87/164 (53%), Gaps = 21/164 (12%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIK-EDDSIMFTCSIRLPINSPLKRSVTGH 59
           M++A+ +++ YC++LPSD ++ L P   +++I+ +  ++ ++C ++LP N+PL+ +V G 
Sbjct: 581 MNSAVGLIHFYCSQLPSDRYSILRPEFIMNKIESQGGAVRYSCKLQLPCNAPLE-NVDGP 639

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYP 117
           +  +   A +   +EAC+ L+E+    + L+P   + E     E +E       E E  P
Sbjct: 640 ECNSLRGAQQSVCLEACKRLHEMGAFTDMLLPDKGSGEEAAKVEGSE-------EGEPLP 692

Query: 118 DSTKRRQFYHKRMASCFT----------NCRPSVNTPCYLYAVK 151
            +++ R++Y + +A              + +P  N   Y+Y VK
Sbjct: 693 GTSRHREYYPEGIADILKGDWILADKDPDAKPGSNVLVYVYMVK 736



 Score = 45.4 bits (106), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            P  +RLE +GD+ L Y IT FL+  Y ++  G+L+ LR+  V+N N  ++  +  F
Sbjct: 1353 PCYQRLEFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSF 1408



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 38/182 (20%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T  Y+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1107 SKVLEALTAASC---QETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIV 1163

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYL--- 1102
            +N +    A+  G   + +          +PG+  V    +K   ++D +L  E      
Sbjct: 1164 SNSVLYQYALDKGLQSYIQADRFAPSRWAAPGVPPVFDEDIKDGDDSDKSLKAEASREVV 1223

Query: 1103 -------------MEGECDEAEDIEV-----------PKALGDLFESVAGAIYLDSGMSL 1138
                         +  E    ED E+            K L D+ E+  G  Y++ G   
Sbjct: 1224 EIVSEEGEIVVKELSTESASMEDGEIEGDSSAYRVLSSKTLADVVEAFIGIYYVEGGQDA 1283

Query: 1139 DT 1140
             T
Sbjct: 1284 AT 1285


>gi|356509849|ref|XP_003523657.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
          Length = 1671

 Score =  204 bits (520), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 158/457 (34%), Positives = 216/457 (47%), Gaps = 53/457 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY ++  L+  YP  HEG+LS  RS  V N  L KLG  +     + 
Sbjct: 1091 SMERLELLGDSVLKYVVSCHLFLKYPKKHEGQLSARRSSAVCNSTLHKLGTDRKLQGYIR 1150

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
             + FEPR  W+ PG    + +     + G        L +P   +   E    ++ + C 
Sbjct: 1151 DSAFEPR-RWVAPG---QRSIHLVCCDCGLET-----LEVPLDAKFHTEDPKVVVGKFCD 1201

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
               C                   +  K+IADCVEALIGAY ++ G   +L  M WLG+  
Sbjct: 1202 RGHCW------------------MCSKTIADCVEALIGAYYVDGGLFASLNVMKWLGIGA 1243

Query: 960  IPPVTNPESKHLSDVLLDGFDK------FEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
               ++  +    +  L     K       E+ I Y F  K  LL+A+TH S     +  C
Sbjct: 1244 ELELSLVDEAITAASLRTCLPKESEIASLEKKIGYEFSVKGLLLEAITHLSEKELGIGCC 1303

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+RLEFLGD++LD LIT HLY+      PG LTDLRSA VNN  FA +AVR   H    H
Sbjct: 1304 YERLEFLGDSVLDLLITWHLYQSHTDIDPGVLTDLRSASVNNDNFAQVAVRHNLHQHLLH 1363

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I  +VK+ +E+D                   I  PKALGD+ ES+ GAI +D
Sbjct: 1364 SSGLLLSQISEYVKVISESDPR-------------SLPSISAPKALGDVVESIVGAILID 1410

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP----EKLADGRR 1189
            + +SLD VW V+Y ++   +    + +P  P REL EL      F K     EK+     
Sbjct: 1411 TKLSLDQVWNVFYSLLSPIVTPDKLELP--PFRELNELCDSLGYFVKVKENCEKVGSAMH 1468

Query: 1190 VRVTVEVFGKGSYK-GIGRNYCIAKCTAAKCALKHLK 1225
            V V+V++      + G G N   AK  AA   LK L+
Sbjct: 1469 VEVSVQLPNALLVREGKGANKKTAKGEAAFYLLKDLE 1505



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 103/496 (20%), Positives = 202/496 (40%), Gaps = 76/496 (15%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            +D+++ +++RYC  LP D ++ + P      ++      + C + LP NS  + ++ G  
Sbjct: 598  LDSSVSLIHRYCGTLPRDKYSCVKPNFEFLSVEGG----YQCKLILPSNSAFQ-TIIGPS 652

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
                 LA  +A  EAC+ L+++  L+  L+P+ ++      + +  + K  E  +   +T
Sbjct: 653  GKDMRLAKHLACFEACKKLHQMGALNEHLVPLIED-----SSEDDHIVKNKESSSGAGTT 707

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE-QNKRGRKIHPPENSPQGL 179
            KR++ + K      +       T     A K + TC I  E  +     I    +   G 
Sbjct: 708  KRKELHGKANIHALSGAWGDKLTRVKFNAYKFEFTCNIVSEIYSGFALLIESELDEDVGN 767

Query: 180  AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTK-VLKLK 238
              L    + K+    + + CG+V++  E + +     E       +F + LF + VLK K
Sbjct: 768  VNLDLYLVSKIVKASV-SSCGQVDLDAEQMMRAKCFHE-------LFFNGLFGRLVLKSK 819

Query: 239  -----KYLMLFDPNC--SENSYFIVPTVSDSEQIV-----IDW----------KFM---- 272
                 ++L+  D N   S    +++  +     I      I+W          KF+    
Sbjct: 820  SAGEREFLLQKDTNSLWSPKHLYLLLPLEKLNDICEGSLQINWCGINSCASAIKFLRRKF 879

Query: 273  TLISEHHND-----VIQDIPEKERE----------NFVFDESKFRDAVVMPWYRNQFEPT 317
            +L++   +D        D    E E          N V D    +D VV+  +  +    
Sbjct: 880  SLVTGDCDDNGTITSPHDTSSSEMECVGANKIHFANCVVDADNIKDRVVLAIHTGKI--- 936

Query: 318  YFYVAEIMTNVHPRSMFPS---RTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLN 374
             + + EI +N+   S F     ++    TF +Y+S  YG+ +++  QP+L +  +    N
Sbjct: 937  -YCIIEIDSNLSAESPFYGNNEKSKESITFSDYFSKSYGISLRHPGQPMLRLKQSHNPHN 995

Query: 375  FLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSIL 434
             L   Y   K   +   + +    +         + PEL  I      + +    LPS++
Sbjct: 996  LLFNFYEEDKSSKIGPAASKLPVHVH--------IPPELLYILDVKRDVLKSLYLLPSLM 1047

Query: 435  YRLNALLLADEIRTAV 450
            YR+ +L+L+ ++R  +
Sbjct: 1048 YRIESLMLSSQLREEI 1063


>gi|242059623|ref|XP_002458957.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
 gi|241930932|gb|EES04077.1| hypothetical protein SORBIDRAFT_03g043355 [Sorghum bicolor]
          Length = 1651

 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 149/454 (32%), Positives = 219/454 (48%), Gaps = 46/454 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+ T+ N HEG+LS  R + + N  L++LG ++     + 
Sbjct: 1066 SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGTERRIQGYIR 1125

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG    +           P         P   E+  E +  I   K +
Sbjct: 1126 DAAFDPR-RWLAPGQLSSR-----------PCPC----ECPVKSEVITEDIHRI-DDKSI 1168

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             +    D                I  K+I+DCVEA+IGAY +E G + A   + WL ++ 
Sbjct: 1169 IIGKACDKG-----------HRWICSKTISDCVEAIIGAYYVEGGLKAAFAVLKWLQIET 1217

Query: 960  IPPVTNPESKHLSDVL-----LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            +      E+   + V      +D  +  E  + Y F+ K  L++A+TH S   +  T CY
Sbjct: 1218 LEEEQIMEALSSASVRNYLPKVDVVEFLEAKLGYTFQVKGLLIEALTHPSQQESGATYCY 1277

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEFLGDA+LD LITRHL+   +    G LTDLRSA VNN  FA +AV+   H F +H 
Sbjct: 1278 QRLEFLGDAVLDILITRHLFLSHKDTDEGELTDLRSASVNNENFAQVAVKHNLHQFLQHS 1337

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
            S  L + I  +V   +    ++++   L  G          PK LGD+ ES+AGAI +DS
Sbjct: 1338 SGFLQDQITEYV--NSLEGSSMDRTSLLSSGPS------RGPKVLGDIVESIAGAILIDS 1389

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF--SKPEKLAD-GRRVR 1191
             + LD VW+V+  ++   +   ++ +P  P REL E   +N  F   K E   D    + 
Sbjct: 1390 KLDLDLVWRVFKPLLSPIVTPENLELP--PFRELNEWCDKNGYFIGIKCENRGDKTTAIL 1447

Query: 1192 VTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
                       +G G+N   AK  AA   L+ L+
Sbjct: 1448 SLQLKDLLLVRQGCGKNKIDAKAHAASLLLRDLE 1481



 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 103/479 (21%), Positives = 201/479 (41%), Gaps = 51/479 (10%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D++I ++N+YC +LP D +    P    +   +     + C++ LP +S + + + G K 
Sbjct: 585  DSSISVLNQYCDKLPKDKYYTPRPTFQFTHYGDG----YECTVTLP-SSAMFQLLVGPKA 639

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                 A ++  ++AC+ L++L  LD+ L P  +E         P+   +    +   +TK
Sbjct: 640  RNMQKAKQLVCLDACKRLHQLGALDDHLSPSVEE--------TPLEISSKSSISTSGTTK 691

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAI 181
            R++ +        +    S  +   L   K+   C   D++      +     + +   +
Sbjct: 692  RKELHGTTKVLSMSGSWGSDKSVTKLQGYKLNFVCDQVDQKYCDFVLLIDTSIAKEAATL 751

Query: 182  LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
                Y+         + CG +E+    ++K   L +  L N L    ++ +K  K  +  
Sbjct: 752  NIDLYLHDKMVKASVSPCGPLELDARQMEK-TKLFQALLFNGLFGKLFIGSKASKTPREF 810

Query: 242  MLFDPNC----SENSYFIVP--TVSDSEQ-IVIDWKFMTLISE------------HHNDV 282
            +L   +      EN Y ++P  +  DS + + I+W  + + +              HN  
Sbjct: 811  ILKKDDAFLWNKENMYLLLPVDSTQDSHKSVCINWSIVDIAATTVGLMRSIYSDGKHNLK 870

Query: 283  IQDIPEKERENFVFDESK------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS 336
             +   EK  ENF+   +K       ++ VV+  +  +   T   V+++  N         
Sbjct: 871  DKLNHEKNDENFIRLANKSCKADDLKNMVVLAIHTGKIY-TVLKVSDLCANSKFDGTSDK 929

Query: 337  RTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR-KGINLATTSEET 395
            +   +QTF EY+  KY + + +  QPLL +  T    N L+ +  NR +GI L       
Sbjct: 930  KEAKFQTFAEYFEKKYNIFLCHPLQPLLVLKPTHNPHNLLSSK--NRDEGIILFFVGN-- 985

Query: 396  RREIRESLGKKQLLV---PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
               + E+  +   LV   PEL +    P  + R     PS+++RL +L+LA ++R+ +A
Sbjct: 986  ---VVENKNRANSLVHMPPELLIPLDLPVDVLRVFYLFPSLMHRLESLMLASQLRSEIA 1041


>gi|414864448|tpg|DAA43005.1| TPA: hypothetical protein ZEAMMB73_941906 [Zea mays]
          Length = 1307

 Score =  204 bits (519), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 157/468 (33%), Positives = 238/468 (50%), Gaps = 52/468 (11%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 778  ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMILYQYALNKNLQSYIQAD 837

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL--KELSPEKVLEIIKQKCV 899
            +F P   W  PG  +P + E                S P++  +E +P    E+ K    
Sbjct: 838  RFAP-SRWAAPG-VLPVFDEETRD------------SEPSIFDEEFTPSS--ELQKNLYD 881

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            D D    M     +  +      +  K++AD VEALIG Y +  G       M W+G+  
Sbjct: 882  DYDGD-SMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIATNHLMKWIGINA 940

Query: 960  -IPPVTNPESK--HLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
             + P   P SK  ++ + ++    FD  E ++  +F++K  L++A+THAS   + ++ CY
Sbjct: 941  ELDPQEIPSSKPYNIPESIIKSINFDTLEGALGIKFQNKGLLVEAITHASRPSSGVS-CY 999

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLEF+GDA+LD+LIT+HL+       PG LTDLR+A VNN  FA +AV+   H   +H 
Sbjct: 1000 QRLEFVGDAVLDHLITKHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1059

Query: 1075 SPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            S  L   I+ FVK +Q E      N F L        G+C      + PK LGD+FES+A
Sbjct: 1060 SSALETQIREFVKDVQEELSKPGFNSFGL--------GDC------KAPKVLGDIFESIA 1105

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI+LDSG +   VWKV+  ++   +     ++P  P+REL E   + A   + +    G
Sbjct: 1106 GAIFLDSGCATSVVWKVFQPLLDPMVT--PDTLPMHPVRELQERCQQQAEGLEYKASRTG 1163

Query: 1188 RRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
                 TVEV   G   G+ +N    +A+  AA+ AL  LK  + A  K
Sbjct: 1164 N--VATVEVLVDGIQIGVAQNPQKKMAQKLAARNALVVLKEKETAAKK 1209



 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/149 (32%), Positives = 78/149 (52%), Gaps = 16/149 (10%)

Query: 319 FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
           FYV  I  N++  + FP +        Y +F +YY  KYG+++   +QPL+     S   
Sbjct: 624 FYVDSICYNMNAENSFPRKEGYLGPLEYSSFADYYKQKYGVELVYKKQPLIRARGVSYCK 683

Query: 374 NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
           N L+PR+ +         SE +  E  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 684 NLLSPRFEH---------SEASNGEFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 734

Query: 432 SILYRLNALLLADEIRTAVASEIGLGKVI 460
           SI+ R+ ++LLA +++  +   +   K++
Sbjct: 735 SIMRRVESMLLAIQLKDIIGYPVPANKIL 763



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 8/132 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +V+ YC++LPSD ++ L P  I     K   S  ++C ++LP N+P ++ + G 
Sbjct: 239 LNSAVGLVHFYCSQLPSDRYSILRPEFIMQKHEKPGGSTEYSCKLQLPCNAPFEK-LEGP 297

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E TE    +  E +  P +
Sbjct: 298 ICSSIRLAQQAVCLAACKKLHEMGAFTDMLLPDRGS--GEGEKTE----QNDEGDPLPGT 351

Query: 120 TKRRQFYHKRMA 131
            + R+F+ + +A
Sbjct: 352 ARHREFFPEGVA 363



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 25/77 (32%), Positives = 41/77 (53%), Gaps = 3/77 (3%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 762  ILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 818

Query: 1056 IIFASLAVRLGFHHFFK 1072
            +I    A+      + +
Sbjct: 819  MILYQYALNKNLQSYIQ 835


>gi|297832974|ref|XP_002884369.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297330209|gb|EFH60628.1| hypothetical protein ARALYDRAFT_317213 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 2033

 Score =  203 bits (517), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 198/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 1642 LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRNECF 1701

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   AL+    P S                               
Sbjct: 1702 EPK-GWMVPGQHSAAY---ALVNDTLPES------------------------------- 1726

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1727 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELSALMFMNWVGIKVDFTT 1777

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  E +  +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1778 TKIERESPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1837

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    H S  LH+ I
Sbjct: 1838 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKENLHKHILHASHVLHKHI 1897

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F  +        EC    DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1898 SRTV-----SEFEQSSLQSTFGWEC----DISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1948

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1949 ASIKPLLGCMITPETVKL--HPVRELTEL 1975



 Score = 66.2 bits (160), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 96/474 (20%), Positives = 197/474 (41%), Gaps = 84/474 (17%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 1201 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAQ 1252

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMP-------VTKEFINLYENTEPVVPKTPEI 113
               K+L  +   +EAC  L+++  L + L+P       V ++   +  N E      PE+
Sbjct: 1253 ANNKVLK-QTVCLEACIQLHKVGALSDHLVPDMVVAETVAQKLEKIQYNPEQPCYFPPEL 1311

Query: 114  ----ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
                   P++T    FY  RM       +PS     +L  V +     + D+    G ++
Sbjct: 1312 VSQFSVQPETT--YHFYLIRM-------KPSSQRNFHLNDVLLGTRVVLEDDIGNTGFRL 1362

Query: 170  HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEE-NLSNTLIFMD 228
                   +G   +T  Y+                 +  L  + V+L     ++   + +D
Sbjct: 1363 ----EDHKGTIAVTLSYVG----------------AFHLTQEEVLLCRRFQITLFRVLLD 1402

Query: 229  YLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS--------EHHN 280
            +    +++    L+L D    +  Y +VP+    E   IDW+ +  ++        +H N
Sbjct: 1403 HSVKNLMEALNGLLLRDGIALD--YLLVPSTHSHETSPIDWEVIRSVNLTCHEALEKHVN 1460

Query: 281  DVIQDIPE-KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAE-IMTNVHPRSMFPSRT 338
              I         ++ +F     ++A+V   +       YFY  + ++ N++  S    R 
Sbjct: 1461 CSINGASRILHTKDGLFCTCVVQNALVYTPHNG-----YFYCTKGVLNNINANSFLTKRN 1515

Query: 339  NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            +  QT+ EYY  ++G+Q+  +++PLL+  H     N+L      ++  +     E     
Sbjct: 1516 SGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHNYLHMTKKKKEKEHDKEFVE----- 1570

Query: 399  IRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
                      L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 1571 ----------LPPELCHVILSPISVDVIYSYTFIPSVMQRIESLLIAYNLKKSI 1614


>gi|125542181|gb|EAY88320.1| hypothetical protein OsI_09779 [Oryza sativa Indica Group]
          Length = 1883

 Score =  203 bits (517), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 230/482 (47%), Gaps = 82/482 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1353 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD 1412

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG                         LP   E S E    I  ++    
Sbjct: 1413 RFAP-SRWAAPGV------------------------LPVFDEESREYEPSIFDEESTGC 1447

Query: 902  --------DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
                    D   +M     +  +      +  K++AD VEALIG Y +  G   A   M 
Sbjct: 1448 ELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMK 1507

Query: 954  WLGLKV------IPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASY 1005
            W+G+        IPP   P+   + + ++    FD  +  +   F++K  L++A+THAS 
Sbjct: 1508 WIGIHAELDPEEIPP---PKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASR 1564

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              + ++ CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+ 
Sbjct: 1565 PSSGVS-CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKH 1623

Query: 1066 GFHHFFKHLSPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKA 1118
              H   +H S  L   I+ FVK +Q E      N F L        G+C      + PK 
Sbjct: 1624 KLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGL--------GDC------KAPKV 1669

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-- 1176
            LGD+ ES+AGAI+LDSG     VWKV+  ++   +     ++P  P+REL E   + A  
Sbjct: 1670 LGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEG 1727

Query: 1177 ---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPAD 1231
               + S+   +A       TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A 
Sbjct: 1728 LEYKASRAGNIA-------TVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETAT 1780

Query: 1232 VK 1233
             K
Sbjct: 1781 KK 1782



 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 16/136 (11%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  N++  + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1199 FYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCK 1258

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ +         S+    +  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1259 NLLSPRFEH---------SDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1309

Query: 432  SILYRLNALLLADEIR 447
            SI+ R+ ++LLA +++
Sbjct: 1310 SIMRRVESMLLAVQLK 1325



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P   + +  K   S+ ++C ++LP N+P ++ + G 
Sbjct: 814 LNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEK-LEGP 872

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E TE    +  E E  P +
Sbjct: 873 ICSSIRLAQQAVCLAACKKLHEMGAFTDTLLP--DRGSGEGEKTE----QNDEGEPLPGT 926

Query: 120 TKRRQFYHKRMA 131
            + R+FY + +A
Sbjct: 927 ARHREFYPEGVA 938



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 1337 ILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1393

Query: 1056 IIFASLAV 1063
            ++    A+
Sbjct: 1394 MVLYQYAL 1401


>gi|357129053|ref|XP_003566182.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
            distachyon]
          Length = 1806

 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 150/455 (32%), Positives = 221/455 (48%), Gaps = 47/455 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  +PN HEG+LS  R+  +SN  L++LG +      + 
Sbjct: 1234 SMERLELLGDSVLKYAVSCHLFLKFPNKHEGQLSSSRTDIISNAALYRLGIEHKIQGYIR 1293

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG    +               ++C   P   E+  + +  I  +  +
Sbjct: 1294 DAAFDPR-RWLAPGQLTNRP--------------FHC-KCPVDSEVVTKDIHVIDDKPTI 1337

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
             +    D   + +             K+I+DCVEA+IGAY +  G R A+ F+ WLG+  
Sbjct: 1338 KIGQACDKGHRWMC-----------SKTISDCVEAIIGAYYVGGGLRAAVAFLRWLGVDA 1386

Query: 958  ----KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                ++I       S       +D  +     + Y F  K  LL+A+TH S+  +     
Sbjct: 1387 EIEEELIMQTILSASMQTYLPKIDLTEALGAKLGYAFSVKGLLLEALTHPSHQESEERYS 1446

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA LD L+T HL+   +    G LTDLRSA VNN  FA +AV+  FHHF +H
Sbjct: 1447 YQRLEFLGDAALDILLTWHLFNSHKDTDEGELTDLRSASVNNENFAKVAVKHKFHHFLQH 1506

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L + I  +     EN         + E        +  PK LGD+ ES+AGAI +D
Sbjct: 1507 SSEILLDQITEYAN-SLENS-------SMDEINLSSDAPLRGPKVLGDIVESIAGAILID 1558

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            + + LD VW V+  ++   +   ++ +P  P RELLE    N  F    K  DG +++  
Sbjct: 1559 TKLDLDVVWGVFKPLLSPIVTPENLELP--PFRELLEWCNRNGYFLGI-KCTDGEKLQAI 1615

Query: 1194 VEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
            ++V  K      +G G+N   AK  AA   LK L+
Sbjct: 1616 LDVQLKDMLVVRRGFGKNKKDAKAHAASMLLKDLE 1650



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 61/298 (20%), Positives = 129/298 (43%), Gaps = 52/298 (17%)

Query: 199  CGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK-------YLMLFDPNC--- 248
            CG +E+ ++ ++K        L   LIF + LF K+    K       +++  D +    
Sbjct: 948  CGLLELDVQQMEK------AKLFQALIF-NGLFGKLFTGSKSSNSPREFILNKDDSLIWN 1000

Query: 249  SENSYFIVP---TVSDSEQIVIDWKFM-------TLISEHHND------VIQDIPEKERE 292
            + N Y ++P   T+   +   I+W+ +        L+ + H+D       I DI + + +
Sbjct: 1001 NANMYLLLPMDPTLESHDSFCINWRLIDEAATAVGLMRKVHSDDKMNLLAILDIDQNDGD 1060

Query: 293  -----NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY 347
                 N   +    R+  V+  +  +   T  +V ++ +N     +   +   ++TF+EY
Sbjct: 1061 LIHLANTSCEAHVLRNVAVLAVHTGKIY-TSLHVTDLSSNSTFDGVSDKKETGFKTFKEY 1119

Query: 348  YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
            +  KYG+ +++  QPLL +  +    N L+ + +  +G  +   +               
Sbjct: 1120 FEKKYGIVLRHPSQPLLVLKPSHNPHNLLSSK-IRDEGPYVIKVNNRVH----------- 1167

Query: 408  LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKV 465
             + PEL +    P  + R     PS++YR+  L+LA ++R+ VA +  +   ++ E +
Sbjct: 1168 -MPPELLIPLNLPEDILRAFYLFPSLMYRMETLMLASQLRSEVAYDSNISSFLILEAI 1224



 Score = 43.5 bits (101), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 5/94 (5%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D+++ ++ +YC +LP D +    P+   +    D    F C + LP +S +   + G K+
Sbjct: 644 DSSVNVIVQYCDKLPKDKYHTRRPLFEFT----DHGDGFVCKLTLP-SSDVLPPLVGPKV 698

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
            +K  A ++  ++AC+ L+ L  LD+ L P  +E
Sbjct: 699 RSKQKAKQLVCLDACKQLHLLGALDDCLCPRVEE 732


>gi|414879098|tpg|DAA56229.1| TPA: hypothetical protein ZEAMMB73_255524 [Zea mays]
          Length = 595

 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 149/455 (32%), Positives = 219/455 (48%), Gaps = 47/455 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+ T+ N HEG+LS  R + + N  L++LG ++     + 
Sbjct: 11   SMERLELLGDSVLKYAVSAHLFMTFLNKHEGQLSSRRQETICNATLYRLGIERRIQGYIR 70

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG    +           P         P   E+  E +  I   K +
Sbjct: 71   DAAFDPR-RWLAPGQLSRR-----------PCPC----ECPVNSEVVTEDIHRI-DDKSI 113

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             +    D                I  K+I+DCVEALIGAY +E G + A   + W  ++ 
Sbjct: 114  IIGKACDKG-----------HRWICSKTISDCVEALIGAYYVEGGLKAAFAVLKWFQIET 162

Query: 960  IPPVTNP----ESKHLSDVL--LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                        S  + + L  +D  +  E  + Y F+ K  L++A+TH+S   +  T C
Sbjct: 163  EIEEELIMEALSSASVRNYLPKVDVVELLEAKLGYTFQMKGLLIEALTHSSQQESGATYC 222

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA+LD LITRHL+   +    G LTDLRSA VNN  FA +AV+   H F +H
Sbjct: 223  YQRLEFLGDAVLDILITRHLFLSHKDTDEGELTDLRSASVNNENFAQVAVKHNLHQFLQH 282

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L + I  +V   +    ++++   L  G C        PK LGD+ ES+AGAI +D
Sbjct: 283  SSGFLQDQITEYV--NSLESSSMDRASLLSSGPC------RGPKVLGDIVESIAGAILID 334

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF--SKPEKLADGR-RV 1190
            S + LD VW+V+  ++   +   ++ +P+   REL E   +N  F   K E   D    +
Sbjct: 335  SKLDLDLVWRVFKPLLSPIVTPENLELPR--FRELNEWSDKNGYFIGIKCENRGDSTMAI 392

Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
                        +G G+N   AK  AA   L+ L+
Sbjct: 393  LNLQLKDLLLVRQGCGKNKVDAKAHAASLLLRDLE 427


>gi|359475987|ref|XP_002280293.2| PREDICTED: endoribonuclease Dicer homolog 3a-like [Vitis vinifera]
          Length = 1648

 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 156/457 (34%), Positives = 219/457 (47%), Gaps = 53/457 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  YP  HEG+LS  RS  V N  L KLG  +     + 
Sbjct: 1078 SMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIR 1137

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  W+ PG    + +       G  A     L +P   +   E    ++ + C 
Sbjct: 1138 DGAFDPR-RWVAPG---QRSIRPVPCSCGVDA-----LEVPLDGKFQTEDTKIVVGKSCD 1188

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                                   +  K+IADCVEALIGAY +  G   AL  M W G+ V
Sbjct: 1189 R------------------GHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDV 1230

Query: 960  -IPPVTNPESKHLSDVL-----LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
             + P    E+   + +       +  +  E  I Y F  K  LL+A+THA+     +  C
Sbjct: 1231 ELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYC 1290

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD++LD LIT HLY+  R   PG LTDLRSA VNN  FA +AVR       +H
Sbjct: 1291 YQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQH 1350

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I+ + K  + +D   N             +  + PKALGDL ES+AGAI +D
Sbjct: 1351 CSGLLLGQIKEYAKYLSGSDDVPN-----------PLQSTKGPKALGDLVESIAGAILID 1399

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV- 1192
            + ++L+ VW+++  ++   +    + +P  P+REL EL      F K +    G  V   
Sbjct: 1400 TKLNLNEVWRIFKPLLSPIVTPDKLELP--PLRELNELCDSLGYFIKEKCTNKGELVHAE 1457

Query: 1193 ----TVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
                 ++V   G  +G GRN   AK  AA   LK+L+
Sbjct: 1458 LRLQMIDVLLVG--EGCGRNKKAAKGQAAAQLLKNLE 1492



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 99/501 (19%), Positives = 200/501 (39%), Gaps = 75/501 (14%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D+++ +++RYC +LP D +    P    + ++     M+ C + LP N+  + ++ G   
Sbjct: 584  DSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEG----MYECKLTLPPNAAFQ-TIIGPGN 638

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                L+ ++  +EAC+ L+++  LD+ L+P  +E      +   ++ K+        +TK
Sbjct: 639  KNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEE-----PSENDIIVKSKGSAAGAGTTK 693

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR-----GRKIHPPENSP 176
            R++ +        +             A K+  +C I +E           K+     + 
Sbjct: 694  RKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNI 753

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +    L +K++    S      CG+V +  E + K +    E   N+L    ++ +K   
Sbjct: 754  EMELYLISKFVRTSVS-----SCGQVSLDAEQVMKAMRF-HELFFNSLFGRLFIGSKSSG 807

Query: 237  LKKYLMLFDPN----CSENSYFIVPTVSDS----EQIVIDW--------------KFMTL 274
            +++  +L         S N Y ++P  S +    E   I+W              K   L
Sbjct: 808  VRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQL 867

Query: 275  ISEHHNDVIQDIPEKERENFVFDESK----------------FRDAVVMPWYRNQFEPTY 318
             + + ND   + P       V  E K                 ++ VV+  +  +     
Sbjct: 868  STGNMNDDTGN-PSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRI---- 922

Query: 319  FYVAEIMTNVHPRSMFPS----RTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLN 374
            + + +++ +    S F       ++ Y TF EY++ KYG+ +    QPLL +  +    N
Sbjct: 923  YSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHN 982

Query: 375  FLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSIL 434
             L          N     +  ++ + E       + PEL +    P ++ + S  LPS++
Sbjct: 983  LLV-------NFNDEDALQTGQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLI 1035

Query: 435  YRLNALLLADEIRTAVASEIG 455
            +RL +L+LA ++R  +A   G
Sbjct: 1036 HRLESLMLASQLREEIAFTTG 1056


>gi|296081735|emb|CBI20740.3| unnamed protein product [Vitis vinifera]
          Length = 1688

 Score =  203 bits (516), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 149/440 (33%), Positives = 210/440 (47%), Gaps = 53/440 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  YP  HEG+LS  RS  V N  L KLG  +     + 
Sbjct: 1088 SMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSARRSWVVCNSTLHKLGTDRSLQGYIR 1147

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  W+ PG    + +       G  A     L +P   +   E    ++ + C 
Sbjct: 1148 DGAFDPR-RWVAPG---QRSIRPVPCSCGVDA-----LEVPLDGKFQTEDTKIVVGKSCD 1198

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                                   +  K+IADCVEALIGAY +  G   AL  M W G+ V
Sbjct: 1199 R------------------GHRWMGSKTIADCVEALIGAYYVGGGLNAALHLMKWFGIDV 1240

Query: 960  -IPPVTNPESKHLSDVL-----LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
             + P    E+   + +       +  +  E  I Y F  K  LL+A+THA+     +  C
Sbjct: 1241 ELEPSLVDEAIATASLRTYIPKANEIEILESKIGYEFSVKGLLLEAITHATEQELGVGYC 1300

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD++LD LIT HLY+  R   PG LTDLRSA VNN  FA +AVR       +H
Sbjct: 1301 YQRLEFLGDSVLDVLITWHLYQSHRDIDPGELTDLRSASVNNESFAQVAVRRNLQQHLQH 1360

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I+ + K  + +D   N             +  + PKALGDL ES+AGAI +D
Sbjct: 1361 CSGLLLGQIKEYAKYLSGSDDVPN-----------PLQSTKGPKALGDLVESIAGAILID 1409

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV- 1192
            + ++L+ VW+++  ++   +    + +P  P+REL EL      F K +    G  V   
Sbjct: 1410 TKLNLNEVWRIFKPLLSPIVTPDKLELP--PLRELNELCDSLGYFIKEKCTNKGELVHAE 1467

Query: 1193 ----TVEVFGKGSYKGIGRN 1208
                 ++V   G  +G GRN
Sbjct: 1468 LRLQMIDVLLVG--EGCGRN 1485



 Score = 79.7 bits (195), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 101/501 (20%), Positives = 203/501 (40%), Gaps = 73/501 (14%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D+++ +++RYC +LP D +    P    + ++     M+ C + LP N+  + ++ G   
Sbjct: 592  DSSVSLIHRYCEKLPGDKYFTPKPFFHFTYLEG----MYECKLTLPPNAAFQ-TIIGPGN 646

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                L+ ++  +EAC+ L+++  LD+ L+P  +E      +   ++ K+        +TK
Sbjct: 647  KNSHLSKQLVCLEACKKLHQMGALDDHLLPYVEE-----PSENDIIVKSKGSAAGAGTTK 701

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR-----GRKIHPPENSP 176
            R++ +        +             A K+  +C I +E           K+     + 
Sbjct: 702  RKELHGTTQTCALSGTWGDKIDGAIFQAYKIDFSCNIVNELYSGFVLLIESKLDDDVGNI 761

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
            +    L +K++    S      CG+V +  E + K +    E   N+L    ++ +K   
Sbjct: 762  EMELYLISKFVRTSVS-----SCGQVSLDAEQVMKAMRF-HELFFNSLFGRLFIGSKSSG 815

Query: 237  LKKYLMLFDPN----CSENSYFIVPTVSDS----EQIVIDW--------------KFMTL 274
            +++  +L         S N Y ++P  S +    E   I+W              K   L
Sbjct: 816  VRREFLLNTQQKSLWSSSNMYLLLPIESSNIPSDESWRINWPGINSCASVVEFLEKRSQL 875

Query: 275  ISEHHNDVIQDIPEKERENFVFDESK----------------FRDAVVMPWYRNQFEPTY 318
             + + ND   + P       V  E K                 ++ VV+  +  +     
Sbjct: 876  STGNMNDDTGN-PSPCSTGLVETECKSISTVHLANNSVHVNNLKNMVVLAIHTGRI---- 930

Query: 319  FYVAEIMTNVHPRSMFPS----RTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLN 374
            + + +++ +    S F       ++ Y TF EY++ KYG+ +    QPLL +  +    N
Sbjct: 931  YSILDVVIDTSAESPFDGSADVNSSNYTTFAEYFNNKYGIVLMYPGQPLLLLKQSHNAHN 990

Query: 375  FLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSIL 434
             L   + +  G  L T     ++ + E       + PEL +    P ++ + S  LPS++
Sbjct: 991  LLV-NFNDEGGEALQT----GQKMLNEKAQTHVHMPPELLVSIEVPITVLKSSYLLPSLI 1045

Query: 435  YRLNALLLADEIRTAVASEIG 455
            +RL +L+LA ++R  +A   G
Sbjct: 1046 HRLESLMLASQLREEIAFTTG 1066


>gi|125584735|gb|EAZ25399.1| hypothetical protein OsJ_09217 [Oryza sativa Japonica Group]
          Length = 1883

 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 230/482 (47%), Gaps = 82/482 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1353 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD 1412

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG                         LP   E S E    I  ++    
Sbjct: 1413 RFAP-SRWAAPGV------------------------LPVFDEESREYEPSIFDEESTGC 1447

Query: 902  --------DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
                    D   +M     +  +      +  K++AD VEALIG Y +  G   A   M 
Sbjct: 1448 ELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMK 1507

Query: 954  WLGLKV------IPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASY 1005
            W+G+        IPP   P+   + + ++    FD  +  +   F++K  L++A+THAS 
Sbjct: 1508 WIGIHAELDPEEIPP---PKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASR 1564

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              + ++ CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+ 
Sbjct: 1565 PSSGVS-CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKH 1623

Query: 1066 GFHHFFKHLSPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKA 1118
              H   +H S  L   I+ FVK +Q E      N F L        G+C      + PK 
Sbjct: 1624 KLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGL--------GDC------KAPKV 1669

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-- 1176
            LGD+ ES+AGAI+LDSG     VWKV+  ++   +     ++P  P+REL E   + A  
Sbjct: 1670 LGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEG 1727

Query: 1177 ---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPAD 1231
               + S+   +A       TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A 
Sbjct: 1728 LEYKASRAGNIA-------TVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETAT 1780

Query: 1232 VK 1233
             K
Sbjct: 1781 KK 1782



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 16/136 (11%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  N++  + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1199 FYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCK 1258

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ +         S+    +  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1259 NLLSPRFEH---------SDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1309

Query: 432  SILYRLNALLLADEIR 447
            SI+ R+ ++LLA +++
Sbjct: 1310 SIMRRVESMLLAVQLK 1325



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P   + +  K   S+ ++C ++LP N+P ++ + G 
Sbjct: 814 LNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEK-LEGP 872

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E TE    +  E E  P +
Sbjct: 873 ICSSIRLAQQAVCLAACKKLHEMGAFTDTLLP--DRGSGEGEKTE----QNDEGEPLPGT 926

Query: 120 TKRRQFYHKRMA 131
            + R+FY + +A
Sbjct: 927 ARHREFYPEGVA 938



 Score = 44.7 bits (104), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 1337 ILEALTAASC---QETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1393

Query: 1056 IIFASLAV 1063
            ++    A+
Sbjct: 1394 MVLYQYAL 1401


>gi|75330224|sp|Q8LMR2.1|DCL1_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 1; AltName:
            Full=Dicer-like protein 1; Short=OsDCL1
 gi|21426125|gb|AAM52322.1|AC105363_11 Putative CAF protein [Oryza sativa Japonica Group]
 gi|108705906|gb|ABF93701.1| DEAD/DEAH box helicase carpel factory, putative, expressed [Oryza
            sativa Japonica Group]
          Length = 1883

 Score =  203 bits (516), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 156/482 (32%), Positives = 230/482 (47%), Gaps = 82/482 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1353 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD 1412

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG                         LP   E S E    I  ++    
Sbjct: 1413 RFAP-SRWAAPGV------------------------LPVFDEESREYEPSIFDEESTGC 1447

Query: 902  --------DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
                    D   +M     +  +      +  K++AD VEALIG Y +  G   A   M 
Sbjct: 1448 ELQKESYDDYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMK 1507

Query: 954  WLGLKV------IPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASY 1005
            W+G+        IPP   P+   + + ++    FD  +  +   F++K  L++A+THAS 
Sbjct: 1508 WIGIHAELDPEEIPP---PKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASR 1564

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
              + ++ CYQRLEF+GDA+LD+LITRHL+       PG LTDLR+A VNN  FA +AV+ 
Sbjct: 1565 PSSGVS-CYQRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKH 1623

Query: 1066 GFHHFFKHLSPGLHEVIQRFVK-MQAE------NDFTLNQEYYLMEGECDEAEDIEVPKA 1118
              H   +H S  L   I+ FVK +Q E      N F L        G+C      + PK 
Sbjct: 1624 KLHVHLRHGSSALETQIREFVKDVQEELLKPGFNSFGL--------GDC------KAPKV 1669

Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-- 1176
            LGD+ ES+AGAI+LDSG     VWKV+  ++   +     ++P  P+REL E   + A  
Sbjct: 1670 LGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMV--TPETLPMHPVRELQERCQQQAEG 1727

Query: 1177 ---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPAD 1231
               + S+   +A       TVEVF  G   G+ +N    +A+  AA+ AL  LK  + A 
Sbjct: 1728 LEYKASRAGNIA-------TVEVFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETAT 1780

Query: 1232 VK 1233
             K
Sbjct: 1781 KK 1782



 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 45/136 (33%), Positives = 72/136 (52%), Gaps = 16/136 (11%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  I  N++  + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1199 FYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCK 1258

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ +         S+    +  E+L K     L PELCL+HP P SL R +  LP
Sbjct: 1259 NLLSPRFEH---------SDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1309

Query: 432  SILYRLNALLLADEIR 447
            SI+ R+ ++LLA +++
Sbjct: 1310 SIMRRVESMLLAVQLK 1325



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/132 (26%), Positives = 71/132 (53%), Gaps = 8/132 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P   + +  K   S+ ++C ++LP N+P ++ + G 
Sbjct: 814 LNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEK-LEGP 872

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E TE    +  E E  P +
Sbjct: 873 ICSSIRLAQQAVCLAACKKLHEMGAFTDTLLP--DRGSGEGEKTE----QNDEGEPLPGT 926

Query: 120 TKRRQFYHKRMA 131
            + R+FY + +A
Sbjct: 927 ARHREFYPEGVA 938



 Score = 44.7 bits (104), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 24/68 (35%), Positives = 39/68 (57%), Gaps = 3/68 (4%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V+N
Sbjct: 1337 ILEALTAASC---QETLCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1393

Query: 1056 IIFASLAV 1063
            ++    A+
Sbjct: 1394 MVLYQYAL 1401


>gi|224101241|ref|XP_002312197.1| dicer-like protein [Populus trichocarpa]
 gi|222852017|gb|EEE89564.1| dicer-like protein [Populus trichocarpa]
          Length = 1468

 Score =  202 bits (514), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 156/453 (34%), Positives = 217/453 (47%), Gaps = 62/453 (13%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+  Y N HEG LS  + K +SN  L + G        +    F
Sbjct: 1064 LETLGDSFLKYAASQQLFKIYQNHHEGLLSFKKDKIISNAALCRRGCNHKLQGFIRNESF 1123

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+   +P G     +L    +  G                    K+    ++K      
Sbjct: 1124 DPKLWIIPGGKLGSDFLSEEPLSKG-------------------RKIYIRGRRK------ 1158

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                               +  K+IAD VEALIGAYL   G   ALLFM W+G+KV   +
Sbjct: 1159 -------------------VKSKTIADVVEALIGAYLSTGGEVTALLFMDWIGIKV-DFM 1198

Query: 964  TNPESKH--LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
              P  +H  L           E  +NY F D S L++A+TH SY L  +  CYQRLEFLG
Sbjct: 1199 NTPYERHIQLQAEKFVNVRYLESLLNYSFNDPSLLVEALTHGSYMLPEIPRCYQRLEFLG 1258

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            DA+LDYLIT H+Y++    SPG LTDLRSA VNN  +A  AV++G      H S  LH+ 
Sbjct: 1259 DAVLDYLITLHMYKEYPGMSPGLLTDLRSASVNNDCYALSAVKVGLDRHILHASHDLHKH 1318

Query: 1082 IQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            I   VK   E         + +E       +   PK LGD+ ES+AGAI +DSG + + V
Sbjct: 1319 IVATVKKIQE---------FSLESTFGWESETAFPKVLGDVIESLAGAILVDSGYNKEVV 1369

Query: 1142 WKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
            ++    +++  I   ++ +   P+REL EL + ++  + KP    +GR   VT+EV   G
Sbjct: 1370 FESIRPLLEPLITPETLRL--QPVRELNELCQRQHFDYKKPIVSRNGRNASVTIEVEANG 1427

Query: 1201 ---SYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230
                +     +   AK  A+K  LK LK +  A
Sbjct: 1428 LIFKHTATVADKTTAKKLASKEVLKALKESNFA 1460



 Score = 50.8 bits (120), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 103/478 (21%), Positives = 190/478 (39%), Gaps = 107/478 (22%)

Query: 11   YCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGHKMPTKLLAWR 69
            YC+RLPSD + + AP   I      D    TC++ LP +SP++   V G+    K    +
Sbjct: 617  YCSRLPSDGYFKPAPRCII------DKETMTCTLHLPKSSPVQTICVQGNIKTLK----Q 666

Query: 70   IAAMEACRVLYELKELDNDLMP--VTKEFI------NLYENTEPV-VPKTPEIETYPDST 120
             A +EAC+ L+    L ++L+P  V +E +        Y++ +P+ +P  PE+ +     
Sbjct: 667  KACLEACKKLHVSGALTDNLVPDIVMEEAVAEDVGNERYDDEQPIYLP--PELVSRGPRN 724

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP----------DEQNKRGRKIH 170
             + ++Y                  CYL  +       IP          + ++   R + 
Sbjct: 725  LKTKYY------------------CYLIELNQNFAYDIPVHDVVLVVRTELESDVIRSMG 766

Query: 171  PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYL 230
                + +GL  +  +YI            G+++     +++ +VL       TL F   L
Sbjct: 767  FDLEAERGLLTVNLRYI------------GDID-----LERVLVLLCRRFQITL-FKVLL 808

Query: 231  FTKVLKLKKYLMLFD-PNCSENSYFIVPTVSDSEQIVIDWK-FMTLISEHHNDVIQDIPE 288
               V KLK+ L   D  + +E  YF++P      Q  I+W    +++  + N+   +   
Sbjct: 809  DHSVNKLKEVLEGLDLGSGAEIDYFLLPAFRSCSQPSINWAPISSVLFSYKNEEHFNCSR 868

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPT-----YFYVAEIMTNVHPRSMFPSRTNTYQT 343
                + V  +     A V+   +N    T      + +  +  +++  S+         T
Sbjct: 869  NGNAHVVQTKCGPVCACVL---QNSLVCTPHNGNIYCITGVFEDLNGNSLLKMGDGGAIT 925

Query: 344  FEEYYS------------LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATT 391
            ++EY++             ++G+Q+    +PLL   H      F     +NR        
Sbjct: 926  YKEYFAKRPMSDLKLTLDFRHGIQLLFNREPLLKGKHI-----FPVHNLLNRCRKQKEKA 980

Query: 392  SEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIR 447
            S+ T  E          L PELC  ++ P   S       +PSI++RL +LL+A  ++
Sbjct: 981  SKNTHVE----------LPPELCEIILSPISISTLYSYTFIPSIMHRLESLLIAVNLK 1028



 Score = 41.6 bits (96), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 22/52 (42%), Positives = 32/52 (61%), Gaps = 1/52 (1%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKV 833
            +RLE +GD+ L Y IT+ +Y  YP +  G L+ LRS  V+N + + L   KV
Sbjct: 1252 QRLEFLGDAVLDYLITLHMYKEYPGMSPGLLTDLRSASVNN-DCYALSAVKV 1302


>gi|322795850|gb|EFZ18529.1| hypothetical protein SINV_15805 [Solenopsis invicta]
          Length = 138

 Score =  201 bits (512), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 95/112 (84%), Positives = 103/112 (91%)

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            VPKALGD+FES+AGAIYLDSGMSLD VW VYY IMKSEIE+ S +VPKSPIRELLELEPE
Sbjct: 17   VPKALGDVFESLAGAIYLDSGMSLDAVWSVYYAIMKSEIEQFSTNVPKSPIRELLELEPE 76

Query: 1175 NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
             A+F +PEKLADGRRVRVTV+VFGKGS+KGIGRNY IAKCTAAKCALK LKS
Sbjct: 77   TAKFGRPEKLADGRRVRVTVDVFGKGSFKGIGRNYRIAKCTAAKCALKKLKS 128


>gi|148907962|gb|ABR17101.1| unknown [Picea sitchensis]
          Length = 685

 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 162/465 (34%), Positives = 230/465 (49%), Gaps = 60/465 (12%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S +RLE +GD+FLKYA++  L+  Y  + EG+L+  RS  + N NL+K  K K F   
Sbjct: 45   GFSLERLEVLGDAFLKYAVSRRLFLVYDKLDEGQLTKKRSNAIKNSNLYKRAKGKGFPAY 104

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
            +    F+P+       YF                     L  P     +PE V  I    
Sbjct: 105  IRDEYFDPKQ------YFA--------------------LGRPCKNVCTPELVHMI---H 135

Query: 898  CVDLDCTV-DMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
              + D T+ D +  SV        H +  K+IAD VEALIGAYL++ G   AL F+ W+G
Sbjct: 136  YFEGDNTMTDTDFTSVKCTK--RHHWLHMKTIADVVEALIGAYLVDSGFGAALAFLKWIG 193

Query: 957  LKV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            +++      +  V      +LS +     D+ E  + Y F  K  LL+A  H S+  +  
Sbjct: 194  IEIDFDTSLVGEVCIRSRNNLSLIKCIDIDELERLLGYNFSYKGLLLEAFAHPSFNEHN- 252

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
              CYQRLEFLGDA+LDY+IT +LY       PG LTD+RS  VNN  FA +AVR G + +
Sbjct: 253  GGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTVNNESFACVAVRHGLYMY 312

Query: 1071 FKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
                S  L   + ++V  M+A   FT +++       CDE E  + PK LGD+ ES AGA
Sbjct: 313  LIQKSDSLSSAVTKYVDFMKAL--FTADRD------SCDEPEP-KCPKVLGDIVESFAGA 363

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPEN---ARFSKPEKLAD 1186
            + +D+G  LD VWK+   I++  +   ++ +   P+REL E+   +     + K  K  +
Sbjct: 364  LVIDTGFDLDCVWKLMLNILQPIVTPETLCL--QPVRELSEVCQHHNLTLDYVKASK-GN 420

Query: 1187 GRRVRVTVEVFGK---GSYKGIGRNYCI--AKCTAAKCALKHLKS 1226
            G    V  +V GK   GS  G G    I  AK  A+K AL  LK 
Sbjct: 421  GNGYLVEAKVSGKKVSGSVGGTGTRTSIKDAKKVASKDALLKLKG 465



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 22/53 (41%), Positives = 31/53 (58%)

Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            P    H G   +RLE +GD+ L Y IT +LY  YP++  G L+ +RS  V+N
Sbjct: 245 HPSFNEHNGGCYQRLEFLGDAVLDYIITSYLYSVYPDMKPGYLTDMRSMTVNN 297


>gi|6715634|gb|AAF26461.1|AC007323_2 T25K16.4 [Arabidopsis thaliana]
          Length = 2024

 Score =  201 bits (510), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 147/457 (32%), Positives = 228/457 (49%), Gaps = 58/457 (12%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1463 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQFALVKGLQSYIQAD 1522

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F P   W  PG  VP   +    + G  +S ++    P  +E S   V E  + +  +L
Sbjct: 1523 RFAP-SRWSAPG--VPPVFDEDTKDGG--SSFFDEEQKPVSEENS--DVFEDGEMEDGEL 1575

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
            +             +L +   +  K++AD VEALIG Y +E G   A   M W+G+ V  
Sbjct: 1576 EG------------DLSSYRVLSSKTLADVVEALIGVYYVEGGKIAANHLMKWIGIHVED 1623

Query: 960  --------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    +  V  PES   S   +D F   E ++ Y FK+K  L++A+THAS   + ++
Sbjct: 1624 DPDEVDGTLKNVNVPESVLKS---ID-FVGLERALKYEFKEKGLLVEAITHASRPSSGVS 1679

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEF+GDA+LD+LITRHL+    +  PG LTDLR+A VNN  FA +AV+   H + 
Sbjct: 1680 -CYQRLEFVGDAVLDHLITRHLFFTYTSLPPGRLTDLRAAAVNNENFARVAVKHKLHLYL 1738

Query: 1072 KHLSPGLHEVIQRFVKMQAEND-----------FTLNQEYYLMEGECDEAE--------- 1111
            +H S  L + + +  K                 F      ++ E + + ++         
Sbjct: 1739 RHGSSALEKQVNKIKKQSILFSKSFKCLTVWLLFVFQIREFVKEVQTESSKPGFNSFGLG 1798

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            D + PK LGD+ ES+AGAI+LDSG      WKV+  +++  +     ++P  P+REL E 
Sbjct: 1799 DCKAPKVLGDIVESIAGAIFLDSGKDTTAAWKVFQPLLQPMV--TPETLPMHPVRELQER 1856

Query: 1172 EPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
              + A   + +    G     TVEVF  G   G+ +N
Sbjct: 1857 CQQQAEGLEYKASRSGN--TATVEVFIDGVQVGVAQN 1891



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 34/113 (30%), Positives = 56/113 (49%), Gaps = 15/113 (13%)

Query: 350  LKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ-- 407
            ++YG+ +   +QPL+     S   N L+PR+             E   E    L K    
Sbjct: 1349 IRYGVDLNCKQQPLIKGRGVSYCKNLLSPRF-------------EQSGESETVLDKTYYV 1395

Query: 408  LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
             L PELC++HP   SL R +  LPSI+ R+ ++LLA +++  ++  I   K++
Sbjct: 1396 FLPPELCVVHPLSGSLIRGAQRLPSIMRRVESMLLAVQLKNLISYPIPTSKIL 1448



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 45/165 (27%), Positives = 72/165 (43%), Gaps = 26/165 (15%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T CY+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1445 SKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMV 1501

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            +N++    A+  G   + +          +PG+  V     K    + F   Q+    E 
Sbjct: 1502 SNMVLYQFALVKGLQSYIQADRFAPSRWSAPGVPPVFDEDTKDGGSSFFDEEQKPVSEEN 1561

Query: 1106 ----ECDEAEDIEV-----------PKALGDLFESVAGAIYLDSG 1135
                E  E ED E+            K L D+ E++ G  Y++ G
Sbjct: 1562 SDVFEDGEMEDGELEGDLSSYRVLSSKTLADVVEALIGVYYVEGG 1606



 Score = 44.3 bits (103), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/162 (22%), Positives = 75/162 (46%), Gaps = 17/162 (10%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
            +++A+ +V+ YC++LP D +  L P  ++ +  K      ++C ++LP N+P +  + G 
Sbjct: 892  LNSAVGLVHFYCSQLPGDRYAILRPEFSMEKHEKPGGHTEYSCRLQLPCNAPFE-ILEGP 950

Query: 60   KMPTKLLAWRI-AAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPD 118
               +  LA ++   + AC+ L+E+    + L+P         ++ E    +  E E  P 
Sbjct: 951  VCSSMRLAQQVDIIVSACKKLHEMGAFTDMLLPDKGS----GQDAEK-ADQDDEGEPVPG 1005

Query: 119  STKRRQFYHKRMASCFTN---------CRPSVNTPCYLYAVK 151
            + + R+FY + +A              C  S     Y+Y V+
Sbjct: 1006 TARHREFYPEGVADVLKGEWVSSGKEVCESSKLFHLYMYNVR 1047


>gi|157285009|gb|ABV31244.1| dicer-like 1 [Physcomitrella patens]
          Length = 1662

 Score =  200 bits (509), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 151/459 (32%), Positives = 232/459 (50%), Gaps = 37/459 (8%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD++LK+ ++  L+  YP  HEG+L+ +R + VSN  L++    K     + 
Sbjct: 1123 SYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIVSNSVLYQYALDKGLQSYIQ 1182

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F P   W  PG  VP   +  + +           +   + E+  E+   ++K+   
Sbjct: 1183 ADRFAP-SRWAAPG--VPPVFDEDIKDGDDSDKSLKAEASREVVEIVSEEGEIVVKELST 1239

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +     D  ++     +      +  K++AD VEA IG Y +E G   A   M+W+G+ V
Sbjct: 1240 ESASMEDGEIEG----DSSAYRVLSSKTLADVVEAFIGIYYVEGGQDAATHLMNWIGIPV 1295

Query: 960  ----------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
                      I     PE+  LS   +D FD  E SI ++F+ +S L++A+THAS   ++
Sbjct: 1296 EFDDAEAELAIGGCEVPETVMLS---ID-FDSLEASIGHKFRKRSLLVEAITHASR-PSS 1350

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
                YQRLEF+GDA+LDYLITR L+       PG LTDLR+A VNN  FA +AV+  FH 
Sbjct: 1351 GVPGYQRLEFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSFHL 1410

Query: 1070 FFKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
              +H S  L   I+ FV  +Q E D      + L         D + PK LGD+ ES+AG
Sbjct: 1411 HLRHGSSALETQIRNFVNDIQTELDKPGVNSFGL--------GDFKAPKVLGDILESIAG 1462

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGR 1188
            A++LD+ +  D VWKV+  +++  +     ++P  P+REL E   + A   + +    G 
Sbjct: 1463 ALFLDACLETDHVWKVFEPLLQPMVT--PETLPMHPVRELQERCQQQAEALEYKASRAGN 1520

Query: 1189 RVRVTVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHLK 1225
                TVEV+  G   G  +N    +A+  AA+ AL  LK
Sbjct: 1521 --VATVEVYVDGVQIGSAQNAQKKMAQKLAARNALVILK 1557



 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 16/149 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FY+  +  ++   S FP +        Y ++ +YY  KYG+++   +QPLL     S   
Sbjct: 971  FYMDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYKQKYGVELVCKKQPLLRGRGVSHCK 1030

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+    G  L +          ++L K    +L PELCLIHP P SL R +  LP
Sbjct: 1031 NLLSPRFETSTGGTLDSL---------DALDKTYYVMLPPELCLIHPLPGSLVRGAQRLP 1081

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            S++ R+ ++LLA +++  +   I   KV+
Sbjct: 1082 SVMRRVESMLLAIQLKHQIDYPIAASKVL 1110



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/164 (25%), Positives = 87/164 (53%), Gaps = 21/164 (12%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIK-EDDSIMFTCSIRLPINSPLKRSVTGH 59
           M++A+ +++ YC++LPSD ++ L P   +++I+ +  ++ ++C ++LP N+PL+ +V G 
Sbjct: 581 MNSAVGLIHFYCSQLPSDRYSILRPEFIMNKIESQGGAVRYSCKLQLPCNAPLE-NVDGP 639

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYP 117
           +  +   A +   +EAC+ L+E+    + L+P   + E     E +E       E E  P
Sbjct: 640 ECNSLRGAQQSVCLEACKRLHEMGAFTDMLLPDKGSGEEAAKVEGSE-------EGEPLP 692

Query: 118 DSTKRRQFYHKRMASCFT----------NCRPSVNTPCYLYAVK 151
            +++ R++Y + +A              + +P  N   Y+Y VK
Sbjct: 693 GTSRHREYYPEGIADILKGDWILADKDPDAKPGSNVLVYVYMVK 736



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 34/56 (60%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
            P  +RLE +GD+ L Y IT FL+  Y ++  G+L+ LR+  V+N N  ++  +  F
Sbjct: 1353 PGYQRLEFVGDAVLDYLITRFLFFKYTDLPPGRLTDLRAAAVNNENFARVAVKHSF 1408



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 44/182 (24%), Positives = 72/182 (39%), Gaps = 38/182 (20%)

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            S +L+A+T AS      T  Y+R E LGDA L ++++R L+        G LT +R  +V
Sbjct: 1107 SKVLEALTAASC---QETFSYERAELLGDAYLKWVVSRRLFLKYPCKHEGQLTRMRQQIV 1163

Query: 1054 NNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQRFVKMQAENDFTLNQEYYL--- 1102
            +N +    A+  G   + +          +PG+  V    +K   ++D +L  E      
Sbjct: 1164 SNSVLYQYALDKGLQSYIQADRFAPSRWAAPGVPPVFDEDIKDGDDSDKSLKAEASREVV 1223

Query: 1103 -------------MEGECDEAEDIEV-----------PKALGDLFESVAGAIYLDSGMSL 1138
                         +  E    ED E+            K L D+ E+  G  Y++ G   
Sbjct: 1224 EIVSEEGEIVVKELSTESASMEDGEIEGDSSAYRVLSSKTLADVVEAFIGIYYVEGGQDA 1283

Query: 1139 DT 1140
             T
Sbjct: 1284 AT 1285


>gi|94450854|gb|ABF19797.1| dicer-like 2 spliceform 1 [Arabidopsis thaliana]
          Length = 1386

 Score =  199 bits (507), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 995  LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECF 1054

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   +L+    P S                               
Sbjct: 1055 EPK-GWMVPGQSSAAY---SLVNDTLPES------------------------------- 1079

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1080 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDLTT 1130

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  +    +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1131 TKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1190

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    + S  LH+ I
Sbjct: 1191 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1250

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F    E   ++       DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1251 SRTV-----SEF----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1301

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1302 ASIKPLLGCMITPETVKL--HPVRELTEL 1328



 Score = 57.4 bits (137), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 210/475 (44%), Gaps = 86/475 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 554 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAE 605

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETYPD 118
              K+L   +  ++AC  L+++  L + L+P            + VV +T   ++E    
Sbjct: 606 ANNKVLKQAVC-LKACIQLHKVGALSDHLVP------------DMVVAETVSQKLEKIQY 652

Query: 119 STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQG 178
           +T++  ++   + S F+  +P   T  + Y ++MK   P         R +H  +     
Sbjct: 653 NTEQPCYFPPELVSQFS-AQP--ETTYHFYLIRMKPNSP---------RNLHLND----- 695

Query: 179 LAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFM 227
             +L T+ + +      SF +    G + V++  +    +  EE L       TL  + +
Sbjct: 696 -VLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTREEVLFCRRFQITLFRVLL 754

Query: 228 DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS-------EHHN 280
           D+    +++    L L D    +  Y +VP+    E  +IDW+ +  ++       E H 
Sbjct: 755 DHSVENLMEALNGLHLRDGVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 812

Query: 281 DVIQDIPEK--ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
           +   +   +    ++ +F     ++A+V   +       Y Y  + + N    +   ++ 
Sbjct: 813 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNG-----YVYCTKGVLNNLNGNSLLTKR 867

Query: 339 NTY-QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
           N+  QT+ EYY  ++G+Q+  +++PLL+  H     ++L   ++ +K        +E  R
Sbjct: 868 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL---HMAKK-----KKEKEHDR 919

Query: 398 EIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           E  E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 920 EFVE-------LPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 967


>gi|145338056|ref|NP_566199.4| protein dicer-like 2 [Arabidopsis thaliana]
 gi|334185051|ref|NP_001189798.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|322518659|sp|Q3EBC8.2|DCL2_ARATH RecName: Full=Endoribonuclease Dicer homolog 2; AltName:
            Full=Dicer-like protein 2; Short=AtDCL2
 gi|332640403|gb|AEE73924.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640405|gb|AEE73926.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1388

 Score =  199 bits (506), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 997  LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECF 1056

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   +L+    P S                               
Sbjct: 1057 EPK-GWMVPGQSSAAY---SLVNDTLPES------------------------------- 1081

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1082 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTT 1132

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  +    +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1133 TKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1192

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    + S  LH+ I
Sbjct: 1193 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1252

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F    E   ++       DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1253 SRTV-----SEF----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1303

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1304 ASIKPLLGCMITPETVKL--HPVRELTEL 1330



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 209/475 (44%), Gaps = 86/475 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 556 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAE 607

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETYPD 118
              K+L   +  ++AC  L+++  L + L+P            + VV +T   ++E    
Sbjct: 608 ANNKVLKQAVC-LKACIQLHKVGALSDHLVP------------DMVVAETVSQKLEKIQY 654

Query: 119 STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQG 178
           +T++  ++   + S F+  +P   T  + Y ++MK   P         R  H  +     
Sbjct: 655 NTEQPCYFPPELVSQFS-AQP--ETTYHFYLIRMKPNSP---------RNFHLND----- 697

Query: 179 LAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFM 227
             +L T+ + +      SF +    G + V++  +    +  EE L       TL  + +
Sbjct: 698 -VLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLL 756

Query: 228 DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS-------EHHN 280
           D+    +++    L L D    +  Y +VP+    E  +IDW+ +  ++       E H 
Sbjct: 757 DHSVENLMEALNGLHLRDGVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 814

Query: 281 DVIQDIPEK--ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
           +   +   +    ++ +F     ++A+V   +       Y Y  + + N    +   ++ 
Sbjct: 815 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNG-----YVYCTKGVLNNLNGNSLLTKR 869

Query: 339 NTY-QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
           N+  QT+ EYY  ++G+Q+  +++PLL+  H     ++L   ++ +K        +E  R
Sbjct: 870 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL---HMAKK-----KKEKEHDR 921

Query: 398 EIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           E  E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 922 EFVE-------LPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 969


>gi|242076428|ref|XP_002448150.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
 gi|241939333|gb|EES12478.1| hypothetical protein SORBIDRAFT_06g022180 [Sorghum bicolor]
          Length = 698

 Score =  199 bits (506), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 153/459 (33%), Positives = 222/459 (48%), Gaps = 60/459 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLKY +    + +Y  + EG+L+  RS  VSN NL++L  ++     + 
Sbjct: 79   SLERLEVLGDAFLKYVVGRHNFISYEGLDEGQLTRRRSDIVSNSNLYELSIRRNLQVYIR 138

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE-LSPEKVLEIIKQKC 898
               FEP                T     G P  +   +  P+ +  L P+ +    ++ C
Sbjct: 139  DQHFEP----------------TQFFALGRPCKV---VCNPDREATLHPKNIDPDRRENC 179

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
             +L CT              + H +  K+IAD VE+L+GA+L+ECG + A  F+ W+G+K
Sbjct: 180  -NLRCTK-------------SHHWLHRKTIADVVESLLGAFLVECGFKAAFAFLRWIGIK 225

Query: 959  V------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            V      +  V +  S +LS +      + EE I Y FK K  LLQA  H S+  ++   
Sbjct: 226  VDFENSALYRVLDASSTNLSLMNYMNISELEELIGYTFKHKGLLLQAFVHPSFNKHS-GG 284

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQR+EFLGDA+LDYL+  +LY       PG LTDL+S  +NN  FA +AV+   H +  
Sbjct: 285  CYQRMEFLGDAVLDYLMASYLYSAYPDLKPGQLTDLKSLALNNNSFAYVAVKKSIHKYLI 344

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYY-LMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
              S  L   I +F            Q Y  L   E D  E+   PK LGD+ ES  GA+ 
Sbjct: 345  KDSKSLTAAINKF------------QNYVNLSSSEKDLLEEPTCPKVLGDIVESCVGAVL 392

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-RFSKPEKLADGRRV 1190
            LDSG +L+ VWK+   ++K  +    + +   P+REL E+   N      P+   D    
Sbjct: 393  LDSGFNLNHVWKLMLMLLKPILSFCGMHI--DPMRELREICQYNGFELGLPKPTEDNGEF 450

Query: 1191 RVTVEVFGKG---SYKGIGRNYCIAKCTAAKCALKHLKS 1226
             V VEV   G   S     RN   A+  AA+ AL  LK+
Sbjct: 451  HVKVEVNIDGKMISCTAANRNSKDARKVAAQEALLKLKN 489



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 20/70 (28%), Positives = 39/70 (55%)

Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            P    H+G   +R+E +GD+ L Y +  +LY  YP++  G+L+ L+S  ++N +   + 
Sbjct: 275 HPSFNKHSGGCYQRMEFLGDAVLDYLMASYLYSAYPDLKPGQLTDLKSLALNNNSFAYVA 334

Query: 830 KQKVFGESMI 839
            +K   + +I
Sbjct: 335 VKKSIHKYLI 344


>gi|356565129|ref|XP_003550797.1| PREDICTED: dicer-like protein 4-like [Glycine max]
          Length = 1636

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 151/439 (34%), Positives = 215/439 (48%), Gaps = 72/439 (16%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+    +  + ++HEG L+  RS  V+N NLFKL  ++     + 
Sbjct: 1036 SLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYIC 1095

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+P   +   G   P+       E     S+  CL+  ++KE          + K  
Sbjct: 1096 DQTFDP-TQFYALGRPCPRLCSNETKE-----SIHFCLN--SVKE----------QGKVT 1137

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +  C  +              H +  K+IAD VEAL+GA+L++ G + A+ F+SW+G++V
Sbjct: 1138 ETQCNKN-------------HHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQV 1184

Query: 960  IPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                 + E+  + D+ +                 E  + + F  K  LLQA  H SY  N
Sbjct: 1185 -----DFEASQVVDICIASASYLPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSY--N 1237

Query: 1009 TLTD-CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
             L   CYQRLEFLGDA+LDYLIT +++       PG LTDLRS  VNN  FA LAV   F
Sbjct: 1238 KLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRSF 1297

Query: 1068 HHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFES 1125
              F    S GL E I+++V              Y+     D +  E  + PKALGDL ES
Sbjct: 1298 DKFLLCDSSGLSEAIKKYVD-------------YIRRPVSDNSIKEGPKCPKALGDLVES 1344

Query: 1126 VAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFS---KP 1181
              GAI LDSG +L+ VWK+    + S I + S S+  SP+R+L EL +  N        P
Sbjct: 1345 CVGAILLDSGFNLNKVWKIMTSFLDS-IMKFSSSLQLSPVRDLRELCQSHNMELEFLPVP 1403

Query: 1182 EKLADGRRVRVTVEVFGKG 1200
             KL   +R  V  +V G G
Sbjct: 1404 SKLT--KRFSVEAKVSGNG 1420



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 189/481 (39%), Gaps = 81/481 (16%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I ++++YC++LP D +    P         DDS   +C I LP N+P+ + + G    +
Sbjct: 578  SISLLHQYCSKLPHDEYFDPKPCFYYL----DDSGGISCHITLPSNAPINQ-ILGTPQLS 632

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
               + R A ++A   LY L  L + L+P   +        E  V  + + +   D+  R 
Sbjct: 633  MEASKRDACLKAIEELYNLGTLSDCLLPKQDD-----AEPEAQVSGSSDEDECEDAISRG 687

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR-------------GRKIH 170
            + +   + S F     + +    L +  +K  CP P+++  +               K+ 
Sbjct: 688  ELHEMLVPSAFGQSWINEDNIVRLNSYYIKF-CPYPEDRVYKEFGLFIMVRLPMEAEKLE 746

Query: 171  PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYL 230
               +   G +++ TK++P           G VE      DK+ +   EN     +F+  +
Sbjct: 747  LDLHLAHGRSVM-TKFVP----------FGVVE-----FDKDEIKMAENFQE--MFLKII 788

Query: 231  FTKVLKLKKYLMLFDPNCSENS----YFIVPTVSD--SEQIVIDWK-----FMTLISEHH 279
              ++  + +++ L     S       Y ++P V       + +DWK       + I  H 
Sbjct: 789  LDRLEFVSEFVDLGMGAESHTGTSTFYLLLPVVLQEYGNAMKVDWKTVKRCLCSPIFRHP 848

Query: 280  NDVIQD--IPEKERENFVFDESKFRDA----VVMPWYRNQFEPTYFYVAEIMTNVHPRSM 333
             D +     P              RD     V  P  +N     +++V  +  N      
Sbjct: 849  ADTMDKKVFPLDIHLQLANGYRSVRDVENSLVYAPHKKN-----FYFVTNV--NYQKNGY 901

Query: 334  FPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
             P   +   ++ +Y+  K+ + ++  EQPLL V   S   N L     NRK        +
Sbjct: 902  SPHNDSGTSSYVDYFIEKFSIHLKCPEQPLLHVKPVSNLHNLLH----NRK------HED 951

Query: 394  ETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
               +E+ E L     L PELC   I  F   +      LPSI++RL  LL+A E++  ++
Sbjct: 952  AEPQELDEYL---IYLPPELCELKIIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHRLS 1008

Query: 452  S 452
            S
Sbjct: 1009 S 1009



 Score = 43.5 bits (101), Expect = 0.76,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 36/70 (51%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P      G   +RLE +GD+ L Y IT +++  YP +  G+L+ LRS  V+N     L 
Sbjct: 1233 HPSYNKLGGGCYQRLEFLGDAVLDYLITSYVFSAYPKLKPGQLTDLRSLSVNNKAFACLA 1292

Query: 830  KQKVFGESMI 839
              + F + ++
Sbjct: 1293 VDRSFDKFLL 1302


>gi|195425457|ref|XP_002061021.1| GK10670 [Drosophila willistoni]
 gi|194157106|gb|EDW72007.1| GK10670 [Drosophila willistoni]
          Length = 1720

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 162/537 (30%), Positives = 248/537 (46%), Gaps = 92/537 (17%)

Query: 736  VEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795
            ++K +  E  +P +  E      +S  SD  FD +            RLE +GDSFLK +
Sbjct: 1183 LQKTISNEHITPAEQSEFLTAITSSGCSDV-FDME------------RLELLGDSFLKMS 1229

Query: 796  ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYF 855
             T++L   + N +EG L+ ++S  VSN NL     +      + +T F P+  W PPG  
Sbjct: 1230 ATLYLSSIHSNWNEGVLTQIKSTLVSNRNLLYCMNETDIPSRINSTLFTPKYTWKPPGLS 1289

Query: 856  VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD-----CTVDMNVQ 910
            +P  +     E    A      +L  L +L+ E++  + K    + +     C  + N  
Sbjct: 1290 LPHNILNLWQEQPEVAKFVLPRNLCAL-QLTEEEIFSLGKLTPANFEKFLESCQANTNYT 1348

Query: 911  SV---VPYNL-VTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNP 966
            S       N  + +  + +K +AD +EAL+G  +   G +     + + G+     +  P
Sbjct: 1349 STDYESEMNFCIGKSKLSNKVVADTLEALLGVIVKNYGVQHGFRILEYFGICKQVDIGKP 1408

Query: 967  ESKHLS-----------------DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             S+ L                  D LL  +   E ++ Y FKD++YLLQA+TH S   N 
Sbjct: 1409 LSQLLDLQLGSTRTRADRDPREIDGLLINYHYLERNLGYTFKDRAYLLQALTHPSNPTNR 1468

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            LT CYQ LEF+GDAILD+LI+ +++E     +PG LTDLRSALVNN   A + VR  FH 
Sbjct: 1469 LTGCYQELEFIGDAILDFLISAYIFERNIRMNPGQLTDLRSALVNNTTLACICVRHRFHL 1528

Query: 1070 FFKHLSPGLHEVIQRFVKMQ---------------AEND------------------FTL 1096
            F    +  L E I  FV  Q                END                   + 
Sbjct: 1529 FILAENTLLTESINSFVDFQEKHMHRVTHHVRILLEENDIQCHNPLDEEDELEMADNLST 1588

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
            N E  L +G  + +E+++VPKALGD+ E++  A+YLD    L   W+V Y + + E+   
Sbjct: 1589 NDE-PLAKGNLNMSENVDVPKALGDVVEALIAAVYLDCK-DLQKTWEVVYRLFEPELIEF 1646

Query: 1157 SVSVPKSPIRELLELEPENARFSKP---EKLADGRRVRV---------TVEVFGKGS 1201
            S +VP +P+R+L E      R +KP     + D  +V V         T++V+G G+
Sbjct: 1647 SRNVPINPLRQLNE-----HRLAKPIFSPAIMDEGKVMVSCLFTCNEKTIKVYGFGT 1698



 Score =  122 bits (306), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 125/473 (26%), Positives = 201/473 (42%), Gaps = 49/473 (10%)

Query: 9    NRYCARLPSDIF-------TRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            +RYC  LPSD F         L P   +    +        SI LP+++ L+ ++    M
Sbjct: 580  HRYCQTLPSDAFGFNMPWYKLLNPDERVQHFGKSAETKQVVSINLPLSTKLRSTIYSDLM 639

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVT-----KEFINL----YENTEPVVPKTPE 112
                 A   AA   C+ LY+L EL+   +P T     K+  ++    ++     V KT  
Sbjct: 640  NCNKSAKISAAFNVCKELYKLGELNQKFLPTTLTDRLKDVSDIHFKHWKKYGDDVTKTNR 699

Query: 113  IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGRKIHP 171
             E    +T +   Y     +   + RP V   CY Y + +K     P  E+N+    +H 
Sbjct: 700  KEDKSGNTSK---YPVNCPTQLYDTRPRVGETCYAYEILLK-----PHFERNEYTAHMHD 751

Query: 172  PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIFMDYL 230
               + +G A+L  K +P +   P+F+  G++ VS+      V+L +EE L +   F   L
Sbjct: 752  ALQTGRGYALLLRKRLPPLAEMPLFSSHGKIHVSVAEQPHEVILKTEEQLDHLHQFHIML 811

Query: 231  FTKVLKLKKYLMLFDPNCSENSYFIVP----TVSDSEQIVIDWKFMTLISEHHNDVIQDI 286
            F  +LK+ +   + D    ENSY +VP    +    E  +IDW  +T             
Sbjct: 812  FRDILKIWQSYFVLDKRSKENSYLVVPLDIKSSGKGEGNIIDWNLVTQFYRGLPQSRTLS 871

Query: 287  PEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEE 346
            P++ R         F   +V  WY + ++     V ++  +  P SM  S   +   + +
Sbjct: 872  PDQRRRQEPPCPDDFEGKIVTQWYAS-YQDKRMLVTKVHRDKTPFSMMES-NQSENNYYD 929

Query: 347  YYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL 403
            Y   KY   I ++    Q L++V   + +LNF     V   G        + R  I    
Sbjct: 930  YTMSKYKNVIGDVVHQNQCLIEVRELTQQLNFYIAHRVKTSG------QSKARARI---- 979

Query: 404  GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
                +L+PELC    FP  LW K + LPSIL RL+ LL A+ +R  + + +GL
Sbjct: 980  ----ILIPELCFNFQFPGDLWAKLLFLPSILNRLHYLLHAEALRQRMNTYLGL 1028


>gi|218184775|gb|EEC67202.1| hypothetical protein OsI_34085 [Oryza sativa Indica Group]
          Length = 1093

 Score =  199 bits (505), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 139/399 (34%), Positives = 198/399 (49%), Gaps = 45/399 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY +   L+  YP  HEG+LS +RSK V N  L K G  +     + 
Sbjct: 549  SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVR 608

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
               F+PR  W+ PG    + +     IE  F         +P+ +    +    ++ + C
Sbjct: 609  DNAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPSHRRYIRDDPSFVVGKPC 658

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
                   D                +  K+I+DCVEAL+GAY +  G   AL  M W G  
Sbjct: 659  -------DRG-----------HRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 700

Query: 957  ----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                +K++  V    S   S   ++  ++ E  + Y F  K  LL+A+TH S     +  
Sbjct: 701  IKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDY 760

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD L+TRHLY       PG LTDLRSALV+N  FA   VR   H   +
Sbjct: 761  CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQ 820

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L E I  +V+         N E    E E  +    +VPK LGD+ ES+AGA++L
Sbjct: 821  HGSGILLEQITEYVRS--------NLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFL 872

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            D+  ++D VW+++  ++   I    +++P  P RELLEL
Sbjct: 873  DTDFNVDMVWEIFEPLLSPLITPDKLALP--PYRELLEL 909


>gi|94450856|gb|ABF19798.1| dicer-like 2 spliceform 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  198 bits (504), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 983  LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECF 1042

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   +L+    P S                               
Sbjct: 1043 EPK-GWMVPGQSSAAY---SLVNDTLPES------------------------------- 1067

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1068 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDLTT 1118

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  +    +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1119 TKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1178

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    + S  LH+ I
Sbjct: 1179 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1238

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F    E   ++       DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1239 SRTV-----SEF----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1289

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1290 ASIKPLLGCMITPETVKL--HPVRELTEL 1316



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 210/475 (44%), Gaps = 86/475 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 542 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAE 593

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETYPD 118
              K+L   +  ++AC  L+++  L + L+P            + VV +T   ++E    
Sbjct: 594 ANNKVLKQAVC-LKACIQLHKVGALSDHLVP------------DMVVAETVSQKLEKIQY 640

Query: 119 STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQG 178
           +T++  ++   + S F+  +P   T  + Y ++MK   P         R +H  +     
Sbjct: 641 NTEQPCYFPPELVSQFS-AQP--ETTYHFYLIRMKPNSP---------RNLHLND----- 683

Query: 179 LAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFM 227
             +L T+ + +      SF +    G + V++  +    +  EE L       TL  + +
Sbjct: 684 -VLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTREEVLFCRRFQITLFRVLL 742

Query: 228 DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS-------EHHN 280
           D+    +++    L L D    +  Y +VP+    E  +IDW+ +  ++       E H 
Sbjct: 743 DHSVENLMEALNGLHLRDGVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 800

Query: 281 DVIQDIPEK--ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
           +   +   +    ++ +F     ++A+V   +       Y Y  + + N    +   ++ 
Sbjct: 801 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNG-----YVYCTKGVLNNLNGNSLLTKR 855

Query: 339 NTY-QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
           N+  QT+ EYY  ++G+Q+  +++PLL+  H     ++L   ++ +K        +E  R
Sbjct: 856 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL---HMAKK-----KKEKEHDR 907

Query: 398 EIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           E  E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 908 EFVE-------LPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 955


>gi|145331748|ref|NP_001078101.1| protein dicer-like 2 [Arabidopsis thaliana]
 gi|332640404|gb|AEE73925.1| protein dicer-like 2 [Arabidopsis thaliana]
          Length = 1374

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 983  LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECF 1042

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   +L+    P S                               
Sbjct: 1043 EPK-GWMVPGQSSAAY---SLVNDTLPES------------------------------- 1067

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1068 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTT 1118

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  +    +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1119 TKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1178

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    + S  LH+ I
Sbjct: 1179 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1238

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F    E   ++       DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1239 SRTV-----SEF----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1289

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1290 ASIKPLLGCMITPETVKL--HPVRELTEL 1316



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 209/475 (44%), Gaps = 86/475 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 542 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAE 593

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETYPD 118
              K+L   +  ++AC  L+++  L + L+P            + VV +T   ++E    
Sbjct: 594 ANNKVLKQAVC-LKACIQLHKVGALSDHLVP------------DMVVAETVSQKLEKIQY 640

Query: 119 STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQG 178
           +T++  ++   + S F+  +P   T  + Y ++MK   P         R  H  +     
Sbjct: 641 NTEQPCYFPPELVSQFS-AQP--ETTYHFYLIRMKPNSP---------RNFHLND----- 683

Query: 179 LAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFM 227
             +L T+ + +      SF +    G + V++  +    +  EE L       TL  + +
Sbjct: 684 -VLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLL 742

Query: 228 DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS-------EHHN 280
           D+    +++    L L D    +  Y +VP+    E  +IDW+ +  ++       E H 
Sbjct: 743 DHSVENLMEALNGLHLRDGVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 800

Query: 281 DVIQDIPEK--ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
           +   +   +    ++ +F     ++A+V   +       Y Y  + + N    +   ++ 
Sbjct: 801 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNG-----YVYCTKGVLNNLNGNSLLTKR 855

Query: 339 NTY-QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
           N+  QT+ EYY  ++G+Q+  +++PLL+  H     ++L   ++ +K        +E  R
Sbjct: 856 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL---HMAKK-----KKEKEHDR 907

Query: 398 EIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           E  E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 908 EFVE-------LPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 955


>gi|322798617|gb|EFZ20221.1| hypothetical protein SINV_06556 [Solenopsis invicta]
          Length = 386

 Score =  198 bits (503), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 108/219 (49%), Positives = 138/219 (63%), Gaps = 6/219 (2%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            + QA TH SY  N LT+CYQRLEFLGDAILD+LIT ++YE     SPG LTDLRSALVNN
Sbjct: 148  IFQAFTHPSYTANGLTECYQRLEFLGDAILDFLITCYIYEKCGNLSPGELTDLRSALVNN 207

Query: 1056 IIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE--YYLM-EGECDEAED 1112
            I FA LAVR G H      +P L E+I RFVK Q + D+ +N E  Y L+ E EC+  E 
Sbjct: 208  ITFACLAVRYGLHIALLAYAPKLDEIIDRFVKFQEDRDYVVNDELLYVLIEEEECNLVEY 267

Query: 1113 IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELE 1172
            ++VPK LGDLFES+ GAIYLDSG  L  +W++ Y +M  EI+  S S+PK P+R + E  
Sbjct: 268  VDVPKVLGDLFESLIGAIYLDSGKDLVKIWEIIYTLMHKEIDEFSRSIPKQPVRVIYEHT 327

Query: 1173 PENARFSKPEKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
                +F +   +    RV + ++V   G    + G G N
Sbjct: 328  DLRPKFLEATLIKGTGRVMIPLKVTIAGKEKFFHGFGIN 366



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 39/127 (30%), Positives = 64/127 (50%), Gaps = 1/127 (0%)

Query: 133 CFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCS 192
            F    P      YL+ +    T P+    N+R    +   N   G  IL+TK +PK+ S
Sbjct: 22  AFYGAYPQPEQSLYLHVINFTSTYPVTSCDNRR-IVFYNLLNDKSGFGILSTKSLPKIPS 80

Query: 193 FPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENS 252
           FPIF + G++ V++      ++L+ +++     F   LFT ++ + K  M+FD +  ENS
Sbjct: 81  FPIFMKDGQLNVNVISDYTTIILNNDDIELLKRFHFLLFTNIISVIKSFMIFDNHNLENS 140

Query: 253 YFIVPTV 259
           + IVP V
Sbjct: 141 FLIVPYV 147


>gi|6714410|gb|AAF26098.1|AC012328_1 unknown protein [Arabidopsis thaliana]
          Length = 2042

 Score =  197 bits (502), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 138/389 (35%), Positives = 197/389 (50%), Gaps = 56/389 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+      HEG LS  +   +SN  L + G Q+     +    F
Sbjct: 1651 LETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECF 1710

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            EP+  W+ PG     Y   +L+    P S                               
Sbjct: 1711 EPK-GWMVPGQSSAAY---SLVNDTLPES------------------------------- 1735

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                N+       + ++ ++  KS+AD VE+LIGAYL E G   AL+FM+W+G+KV    
Sbjct: 1736 ---RNIY------VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTT 1786

Query: 964  TNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            T  +    +    L      E  +NY F+DKS L++A+TH SY +  +  CYQRLEFLGD
Sbjct: 1787 TKIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGD 1846

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            ++LDYLIT+HLY+     SPG LTD+RSA VNN  +A +AV+   H    + S  LH+ I
Sbjct: 1847 SVLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHI 1906

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
             R V     ++F    E   ++       DI  PK LGD+ ES+AGAI++DSG + + V+
Sbjct: 1907 SRTV-----SEF----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVF 1957

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
                 ++   I   +V +   P+REL EL
Sbjct: 1958 ASIKPLLGCMITPETVKL--HPVRELTEL 1984



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 98/475 (20%), Positives = 209/475 (44%), Gaps = 86/475 (18%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +++ ++  YC+RLPSD + + AP     ++ +D     +C++ LP + P+K      +
Sbjct: 1210 LSSSVSLIYHYCSRLPSDEYFKPAPRF---DVNKDQG---SCTLYLPKSCPVKE--VKAE 1261

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETYPD 118
               K+L  +   ++AC  L+++  L + L+P            + VV +T   ++E    
Sbjct: 1262 ANNKVLK-QAVCLKACIQLHKVGALSDHLVP------------DMVVAETVSQKLEKIQY 1308

Query: 119  STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQG 178
            +T++  ++   + S F+  +P   T  + Y ++MK   P         R  H  +     
Sbjct: 1309 NTEQPCYFPPELVSQFS-AQP--ETTYHFYLIRMKPNSP---------RNFHLND----- 1351

Query: 179  LAILTTKYIPK----VCSFPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFM 227
              +L T+ + +      SF +    G + V++  +    +  EE L       TL  + +
Sbjct: 1352 -VLLGTRVVLEDDIGNTSFRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLL 1410

Query: 228  DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLIS-------EHHN 280
            D+    +++    L L D    +  Y +VP+    E  +IDW+ +  ++       E H 
Sbjct: 1411 DHSVENLMEALNGLHLRDGVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE 1468

Query: 281  DVIQDIPEK--ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
            +   +   +    ++ +F     ++A+V   +       Y Y  + + N    +   ++ 
Sbjct: 1469 NCSTNGASRILHTKDGLFCTCVVQNALVYTPHNG-----YVYCTKGVLNNLNGNSLLTKR 1523

Query: 339  NTY-QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
            N+  QT+ EYY  ++G+Q+  +++PLL+  H     ++L   ++ +K        +E  R
Sbjct: 1524 NSGDQTYIEYYEERHGIQLNFVDEPLLNGRHIFTLHSYL---HMAKK-----KKEKEHDR 1575

Query: 398  EIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            E  E       L PELC  ++ P    +      +PS++ R+ +LL+A  ++ ++
Sbjct: 1576 EFVE-------LPPELCHVILSPISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 1623


>gi|297610684|ref|NP_001064898.2| Os10g0485600 [Oryza sativa Japonica Group]
 gi|18087887|gb|AAL59041.1|AC087182_24 putative RNA helicase [Oryza sativa Japonica Group]
 gi|31432753|gb|AAP54346.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|255679506|dbj|BAF26812.2| Os10g0485600 [Oryza sativa Japonica Group]
          Length = 1458

 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 205/424 (48%), Gaps = 45/424 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY +   L+  YP  HEG+LS +RSK V N  L K G  +     + 
Sbjct: 926  SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVR 985

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
               F+PR  W+ PG    + +     IE  F         +P+ +    +     + + C
Sbjct: 986  DNAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPSHRRYIRDDPSFFVGKPC 1035

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
                   D                +  K+I+DCVEAL+GAY +  G   AL  M W G  
Sbjct: 1036 -------DRG-----------HRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 1077

Query: 957  ----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                +K++  V    S   S   ++  ++ E  + Y F  K  LL+A+TH S     +  
Sbjct: 1078 IKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDY 1137

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD L+TRHLY       PG LTDLRSALV+N  FA   VR   H   +
Sbjct: 1138 CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQ 1197

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L E I  +V+         N E    E E  +    +VPK LGD+ ES+AGA+++
Sbjct: 1198 HGSGILLEQITEYVRS--------NLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFI 1249

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV 1192
            D+  ++D VW+++  ++   I    +++P  P RELLEL      F   +  + G  V +
Sbjct: 1250 DTDFNVDMVWEIFEPLLSPLITPDKLALP--PYRELLELCSHIGCFLNSKCTSKGEEVII 1307

Query: 1193 TVEV 1196
             + +
Sbjct: 1308 EMSL 1311



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 69/125 (55%), Gaps = 10/125 (8%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D  + ++ +YC +LP D +    P     E+  +D  +F C++ LP N+  + S+ G   
Sbjct: 534 DCCVNLIRKYCEKLPKDRYFMPKPSF---EVTIEDG-LFKCTLTLPRNAAFQ-SIVGPLS 588

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            +  L+ ++ ++EAC+ L++L EL++ L+P+T+E ++    T        +  + P +TK
Sbjct: 589 SSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTT-----ADEKCISGPGTTK 643

Query: 122 RRQFY 126
           R++ +
Sbjct: 644 RKELH 648


>gi|356546104|ref|XP_003541471.1| PREDICTED: dicer-like protein 4-like [Glycine max]
          Length = 1636

 Score =  197 bits (501), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 150/440 (34%), Positives = 214/440 (48%), Gaps = 74/440 (16%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+    +  + ++HEG L+  RS  V+N NLFKL  ++     + 
Sbjct: 1034 SLERLEVLGDAFLKFAVARHFFLMHDSLHEGDLTKRRSNAVNNSNLFKLAIKRNLQVYIC 1093

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ-KC 898
               F+P   +   G   P+       E     S+  CL+              +++Q K 
Sbjct: 1094 DQTFDP-TQFYALGRPCPRVCSNETEE-----SIHFCLN-------------SVMQQGKA 1134

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
             +  C+ +              H +  K+IAD VEAL+GA+L++ G + A+ F+SW+G++
Sbjct: 1135 TETRCSKN-------------HHWLHRKTIADVVEALVGAFLVDSGFKAAIAFLSWIGIQ 1181

Query: 959  VIPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFL 1007
            V     + E+  + D+ +                 E  + + F  K  LLQA  H SY  
Sbjct: 1182 V-----DFEASQVVDICIASASYSPLSSEVDIPSLEGKLGHHFFHKGLLLQAFVHPSY-- 1234

Query: 1008 NTLTD-CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
            N L   CYQRLEFLGDA+LDYLIT +L+       PG LTDLRS  VNN  FA LAV   
Sbjct: 1235 NKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACLAVDRS 1294

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFE 1124
            F +F    S GL E I+++V              Y+     D    E  + PKALGDL E
Sbjct: 1295 FDNFLLCDSSGLSEAIKKYVD-------------YVRRPVSDNGIKEGPKCPKALGDLVE 1341

Query: 1125 SVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFS---K 1180
            S  GAI LDSG +L+ VWK+    +   I + S S+  SP+R+L EL +  N        
Sbjct: 1342 SCVGAILLDSGFNLNKVWKIMTSFL-DPIMKFSSSLQLSPVRDLRELCQSHNLELEFLPV 1400

Query: 1181 PEKLADGRRVRVTVEVFGKG 1200
            P KL   +R  V  +V G G
Sbjct: 1401 PSKLT--KRFSVEAKVSGNG 1418



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 103/482 (21%), Positives = 193/482 (40%), Gaps = 84/482 (17%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I ++++YC++LP D +    P    S    DDS   +C I LP N+P+ + + G    +
Sbjct: 577  SISLLHQYCSKLPHDEYFDPKP----SFHYLDDSGGISCHITLPSNAPINQ-ILGTPQLS 631

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI-ETYPDSTKR 122
               + R A ++A   LY L  L + L+P         ++ EP V  +    E   D+  R
Sbjct: 632  MEASKREACLKAIEELYNLGALSDCLLPKQ-------DDAEPEVQVSGSSDEDESDAISR 684

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR-------------GRKI 169
             + +   + S F     + +    L +  +K  CP P+++  +               K+
Sbjct: 685  GKLHEMLVPSAFGQSWINEDNIVRLNSYYIKF-CPYPEDRVYKEFGLFMMTCLPMEAEKL 743

Query: 170  HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDY 229
                +   G +++T           +F   G VE      +K+ +   EN     +F+  
Sbjct: 744  ELDLHLAHGRSVMT-----------MFVPFGVVE-----FNKDEIKMAENFQE--MFLKI 785

Query: 230  LFTKVLKLKKYLMLFDPNCSENS----YFIVPTVSD--SEQIVIDWKFM-----TLISEH 278
            +  ++  + +++ L     S +     Y ++P V       + +DWK +     + I  H
Sbjct: 786  ILDRLEFISEFVDLGMSAESHSGTSTFYLLLPVVLQEYGNAMEVDWKIVKRCLCSPIFRH 845

Query: 279  HNDVIQ------DIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
              D +       DI  +    +    +     V  P  +N     +++V  +  N     
Sbjct: 846  PADTMDKKVFPLDIHLQLANGYRSVRNVENSLVYAPHKKN-----FYFVTNV--NYEKNG 898

Query: 333  MFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTS 392
              P   +   ++ +Y+  K+ + ++  +QPLL V   S   N L     NRK        
Sbjct: 899  YSPHNDSGTSSYVDYFIEKFSIHLKCPKQPLLHVKPVSNLHNLLH----NRK------RE 948

Query: 393  EETRREIRESLGKKQLLVPELCLIH--PFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
            +   +E+ E L     L PELC +    F   +      LPSI++RL  LL+A E++  +
Sbjct: 949  DAEPQELDEYL---IYLPPELCELKVIGFSKDIGSSISLLPSIMHRLGNLLVAIELKHML 1005

Query: 451  AS 452
            +S
Sbjct: 1006 SS 1007



 Score = 44.7 bits (104), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 33/65 (50%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P      G   +RLE +GD+ L Y IT +L+  YP +  G+L+ LRS  V+N     L 
Sbjct: 1231 HPSYNKLGGGCYQRLEFLGDAVLDYLITSYLFSAYPKLKPGQLTDLRSLSVNNKAFACLA 1290

Query: 830  KQKVF 834
              + F
Sbjct: 1291 VDRSF 1295


>gi|222613035|gb|EEE51167.1| hypothetical protein OsJ_31945 [Oryza sativa Japonica Group]
          Length = 1570

 Score =  197 bits (500), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 205/424 (48%), Gaps = 45/424 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY +   L+  YP  HEG+LS +RSK V N  L K G  +     + 
Sbjct: 995  SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVR 1054

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
               F+PR  W+ PG    + +     IE  F         +P+ +    +     + + C
Sbjct: 1055 DNAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPSHRRYIRDDPSFFVGKPC 1104

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
                   D                +  K+I+DCVEAL+GAY +  G   AL  M W G  
Sbjct: 1105 -------DRG-----------HRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 1146

Query: 957  ----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                +K++  V    S   S   ++  ++ E  + Y F  K  LL+A+TH S     +  
Sbjct: 1147 IKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDY 1206

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD L+TRHLY       PG LTDLRSALV+N  FA   VR   H   +
Sbjct: 1207 CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQ 1266

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L E I  +V+         N E    E E  +    +VPK LGD+ ES+AGA+++
Sbjct: 1267 HGSGILLEQITEYVRS--------NLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFI 1318

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV 1192
            D+  ++D VW+++  ++   I    +++P  P RELLEL      F   +  + G  V +
Sbjct: 1319 DTDFNVDMVWEIFEPLLSPLITPDKLALP--PYRELLELCSHIGCFLNSKCTSKGEEVII 1376

Query: 1193 TVEV 1196
             + +
Sbjct: 1377 EMSL 1380



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 201/491 (40%), Gaps = 71/491 (14%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D  + ++ +YC +LP D +    P     E+  +D  +F C++ LP N+  + S+ G   
Sbjct: 511 DCCVNLIRKYCEKLPKDRYFMPKPSF---EVTIEDG-LFKCTLTLPRNAAFQ-SIVGPLS 565

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            +  L+ ++ ++EAC+ L++L EL++ L+P+T+E ++    T        +  + P +TK
Sbjct: 566 SSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTT-----ADEKCISGPGTTK 620

Query: 122 RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE----NSPQ 177
           R++ +        +      +    L   ++   C    E       +  PE     +P 
Sbjct: 621 RKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPS 680

Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
            + +     IP    +   T  G+V+++ + + K  +  E        F + +F ++   
Sbjct: 681 KMDLF---LIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQE-------FFFNGIFGRLFHG 730

Query: 238 KKYL-----MLFDPNC-----SENSYFIVPTVSDS---EQIVIDWKFM--------TLIS 276
            +        +F         +E+ Y ++P    S   + + I W+ +         L S
Sbjct: 731 SRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWS 790

Query: 277 EHHNDV----IQDIPEKER---------ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAE 323
            +  D     +  IP+K R          N     S  +D+VV+  +  +       + +
Sbjct: 791 SYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILD 850

Query: 324 IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDV--DHTSCRLNFLTPRYV 381
                    M   + + + +F +YY  KYG+ IQ+ EQPLL +   H +  L F   +Y+
Sbjct: 851 TTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYL 910

Query: 382 N-RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNAL 440
           +   G  L    E+    +           PEL +       + +    LPS+++RL +L
Sbjct: 911 DGSTGKPLLMEKEQIHARVP----------PELLIHLDVTTDILKSFYLLPSVIHRLQSL 960

Query: 441 LLADEIRTAVA 451
           +LA ++R  + 
Sbjct: 961 MLASQLRREIG 971


>gi|251764789|sp|Q7XD96.2|DCL3B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3b; AltName:
            Full=Dicer-like protein 3b; Short=OsDCL3b
          Length = 1637

 Score =  197 bits (500), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 205/424 (48%), Gaps = 45/424 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY +   L+  YP  HEG+LS +RSK V N  L K G  +     + 
Sbjct: 1063 SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVR 1122

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
               F+PR  W+ PG    + +     IE  F         +P+ +    +     + + C
Sbjct: 1123 DNAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPSHRRYIRDDPSFFVGKPC 1172

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
                   D                +  K+I+DCVEAL+GAY +  G   AL  M W G  
Sbjct: 1173 -------DRG-----------HRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 1214

Query: 957  ----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                +K++  V    S   S   ++  ++ E  + Y F  K  LL+A+TH S     +  
Sbjct: 1215 IKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDY 1274

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD L+TRHLY       PG LTDLRSALV+N  FA   VR   H   +
Sbjct: 1275 CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQ 1334

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L E I  +V+         N E    E E  +    +VPK LGD+ ES+AGA+++
Sbjct: 1335 HGSGILLEQITEYVRS--------NLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFI 1386

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV 1192
            D+  ++D VW+++  ++   I    +++P  P RELLEL      F   +  + G  V +
Sbjct: 1387 DTDFNVDMVWEIFEPLLSPLITPDKLALP--PYRELLELCSHIGCFLNSKCTSKGEEVII 1444

Query: 1193 TVEV 1196
             + +
Sbjct: 1445 EMSL 1448



 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 100/491 (20%), Positives = 201/491 (40%), Gaps = 71/491 (14%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D  + ++ +YC +LP D +    P     E+  +D  +F C++ LP N+  + S+ G   
Sbjct: 579  DCCVNLIRKYCEKLPKDRYFMPKPSF---EVTIEDG-LFKCTLTLPRNAAFQ-SIVGPLS 633

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
             +  L+ ++ ++EAC+ L++L EL++ L+P+T+E ++    T        +  + P +TK
Sbjct: 634  SSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTT-----ADEKCISGPGTTK 688

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE----NSPQ 177
            R++ +        +      +    L   ++   C    E       +  PE     +P 
Sbjct: 689  RKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPS 748

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
             + +     IP    +   T  G+V+++ + + K  +  E        F + +F ++   
Sbjct: 749  KMDLF---LIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQE-------FFFNGIFGRLFHG 798

Query: 238  KKYL-----MLFDPNC-----SENSYFIVPTVSDS---EQIVIDWKFM--------TLIS 276
             +        +F         +E+ Y ++P    S   + + I W+ +         L S
Sbjct: 799  SRKSGAQRDFIFKKGHEIQWNTESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLWS 858

Query: 277  EHHNDV----IQDIPEKER---------ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAE 323
             +  D     +  IP+K R          N     S  +D+VV+  +  +       + +
Sbjct: 859  SYQGDENVIPVNCIPQKRRGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLILD 918

Query: 324  IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDV--DHTSCRLNFLTPRYV 381
                     M   + + + +F +YY  KYG+ IQ+ EQPLL +   H +  L F   +Y+
Sbjct: 919  TTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKYL 978

Query: 382  N-RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNAL 440
            +   G  L    E+    +           PEL +       + +    LPS+++RL +L
Sbjct: 979  DGSTGKPLLMEKEQIHARVP----------PELLIHLDVTTDILKSFYLLPSVIHRLQSL 1028

Query: 441  LLADEIRTAVA 451
            +LA ++R  + 
Sbjct: 1029 MLASQLRREIG 1039


>gi|115441737|ref|NP_001045148.1| Os01g0909200 [Oryza sativa Japonica Group]
 gi|75321191|sp|Q5N870.1|DCL3A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 3a; AltName:
            Full=Dicer-like protein 3a; Short=OsDCL3a
 gi|56785369|dbj|BAD82327.1| putative Endoribonuclease Dicer homolog [Oryza sativa Japonica Group]
 gi|113534679|dbj|BAF07062.1| Os01g0909200 [Oryza sativa Japonica Group]
          Length = 1651

 Score =  196 bits (499), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 140/428 (32%), Positives = 208/428 (48%), Gaps = 54/428 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  +PN  EG+LS +R   + N  L+KLG ++     + 
Sbjct: 1064 SMERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1123

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG            +     S   C   P   E+  + +  II  K +
Sbjct: 1124 DAAFDPR-RWLAPG------------QLSIRPSPCEC---PVKSEVVTDDI-HIIDDKAI 1166

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             L    D                +  K+IADCVEA+IGAY    G R A+  + WLG+  
Sbjct: 1167 VLGKACDKG-----------HRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLKWLGIG- 1214

Query: 960  IPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                   E   +   +L             F+  E  + Y F  K  L++A+TH S    
Sbjct: 1215 ----AEIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQEL 1270

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CY+RLEFLGDA+LD L+TR+L+   +  + G LTDLRSA VNN  FA +AV+  FH
Sbjct: 1271 GAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFH 1330

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
            HF +H S  L + I  +V     +  ++++   L +G        + PK LGD+ ES+AG
Sbjct: 1331 HFLQHSSGLLLDQITEYVNRLEGS--SMDKVELLSDGL------PKGPKVLGDIVESIAG 1382

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGR 1188
            AI LD+ + LD VW ++  ++   +   ++ +P  P REL+E   ++  F        G 
Sbjct: 1383 AILLDTKLDLDVVWGIFEPLLSPIVTPENLELP--PYRELIEWCGKHGYFVGINCRDQGD 1440

Query: 1189 RVRVTVEV 1196
             V  T++V
Sbjct: 1441 TVVATLDV 1448



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 204/486 (41%), Gaps = 63/486 (12%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D++I IV RYC +LP D     +P  T      DD   + C++ LP ++ L+  V G K 
Sbjct: 585  DSSISIVYRYCEKLPQD--KCYSPKPTFEFTHHDDG--YVCTLALPPSAVLQILV-GPKA 639

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                 A ++  ++AC+ L+EL  LD+ L       +++ +    +V K     T   +TK
Sbjct: 640  RNMHKAKQLVCLDACKKLHELGALDDHLC------LSVEDPVPEIVSKNKG--TGIGTTK 691

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRK--IHPPENSPQGL 179
            R++ +       ++    S  T   L + KM   C   D+  +   +  +      P  +
Sbjct: 692  RKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVC---DQAGQIYSEFVLLIDATLPDEV 748

Query: 180  AILTTK-YIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
            A L    Y+         + CG +E+  + +++   L +  L N L    +  +KV    
Sbjct: 749  ATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQ-AKLFQGLLFNGLFGKLFTRSKVPNAP 807

Query: 239  KYLMLFDPNC----SENSYFIVPT-VSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
            +  +L   +     + + Y ++PT  S    + I+W  +   +     + +   E +RE 
Sbjct: 808  REFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLMRRIYSENKREL 867

Query: 294  F-VFDESK-----------------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP 335
              +FD  +                  +D VV+  +  +      Y A  +T +   S F 
Sbjct: 868  LGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKI-----YTALDITELSGDSAFD 922

Query: 336  SRTNT----YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGI--NLA 389
              ++     ++TF EY+  KYG+ +++  QPLL +  +    N L+ ++ +   +  N++
Sbjct: 923  GASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDEGNVVENMS 982

Query: 390  TTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
              +      +      +  + PEL +    P  + R     P+++YR+ +L LA ++R  
Sbjct: 983  NGT-----PVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLASQLR-- 1035

Query: 450  VASEIG 455
              SEIG
Sbjct: 1036 --SEIG 1039



 Score = 45.4 bits (106), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 52/222 (23%), Positives = 87/222 (39%), Gaps = 38/222 (17%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH- 1073
            +RLE LGD++L Y ++ HL+        G L+ +R  ++ N     L +      + +  
Sbjct: 1066 ERLELLGDSVLKYAVSCHLFLKFPNKDEGQLSSIRCHMICNATLYKLGIERNVQGYVRDA 1125

Query: 1074 -------LSPGLHEV----IQRFVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALG 1120
                   L+PG   +     +  VK +   D    ++ +  ++   CD+       K + 
Sbjct: 1126 AFDPRRWLAPGQLSIRPSPCECPVKSEVVTDDIHIIDDKAIVLGKACDKGHRWMCSKTIA 1185

Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER-------LSVSV----PKSPIRELL 1169
            D  E++ GA Y   G+        +  I  +EIE        LS SV    PK  + E+L
Sbjct: 1186 DCVEAIIGAYYAGGGLRAAMAVLKWLGI-GAEIEEDLIVQAILSASVQTYLPKDNVFEML 1244

Query: 1170 ELEPENARFSKPEKLADGRRVR-VTVEVFGKGSYKGIGRNYC 1210
            E            KL     V+ + VE     S + +G  YC
Sbjct: 1245 E-----------AKLGYSFSVKGLLVEALTHPSQQELGAKYC 1275


>gi|356533095|ref|XP_003535104.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 1414

 Score =  196 bits (499), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 145/395 (36%), Positives = 196/395 (49%), Gaps = 69/395 (17%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+ TY N HEG LS  R K +SN  L KLG        +    F
Sbjct: 994  LETLGDSFLKYAASQQLFKTYHNHHEGLLSLKREKIISNAALCKLGCSSGLPGFIRNEPF 1053

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P + W+ PG                P S         LKEL       + K K + +  
Sbjct: 1054 DP-NTWIIPG--------------DKPRSF-------KLKEL-------VAKGKTIYVS- 1083

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                            +  +  K +AD VEALIGA+L   G + ALLFM W+G+KV    
Sbjct: 1084 ---------------GKRKLRQKIVADVVEALIGAFLSTGGEKAALLFMDWVGIKVSFNK 1128

Query: 964  TNPESKHLSDVL---LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
              P  +H  D+    L      E  +NY F D+S L++A+TH SY L  +  CYQRLEFL
Sbjct: 1129 I-PYDRHF-DIQPEKLVNVSFLESQLNYSFHDRSLLVEAVTHGSYMLPEVPRCYQRLEFL 1186

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH- 1079
            GD++LDYLIT HLY      +PG LTD+RSA VNN  +A  A++ G H    H S  LH 
Sbjct: 1187 GDSVLDYLITWHLYNKYPGMTPGQLTDMRSASVNNDCYAWSAIKHGLHKHVLHASQELHM 1246

Query: 1080 ---EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                 + +F K+ + + F    E  L             PK LGD+ ES+AGAI +DSG 
Sbjct: 1247 HVSATLNKFDKLSSLSTFGYEAETSL-------------PKVLGDIVESLAGAILVDSGY 1293

Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            + + VW+    +++  +   ++ +   PIREL EL
Sbjct: 1294 NKEVVWQSIRPLLEPLVTPETLKL--HPIRELNEL 1326



 Score = 42.7 bits (99), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 44/196 (22%), Positives = 76/196 (38%), Gaps = 19/196 (9%)

Query: 250 ENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPW 309
           E  Y ++P +   +   I+W  +  ++          P    ++ +    K ++A+V   
Sbjct: 777 EIDYLLLPAMGKGKYTAINWLAVNSVNPSEVSCKYHEPHIRTKSGLVCSCKLQNALVCT- 835

Query: 310 YRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHT 369
             +      FY+A     +   S    R     T+++YY   +G+Q+Q   Q LL   H 
Sbjct: 836 -SHPIGKISFYIATGTMELDGNSPMELRGGGVTTYKKYYEQHHGIQLQFEHQRLLKARHI 894

Query: 370 SCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKS 427
               N    R   ++G        E  +   E       L PELC  ++ P   SL    
Sbjct: 895 FQVKNHCHGRKQGKEG--------EVSKAFVE-------LPPELCSIVMMPISDSLIYSY 939

Query: 428 VSLPSILYRLNALLLA 443
             +PSI++R  +LL A
Sbjct: 940 SFIPSIMHRFESLLGA 955



 Score = 42.0 bits (97), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L Y IT  LY  YP +  G+L+ +RS  V+N
Sbjct: 1181 QRLEFLGDSVLDYLITWHLYNKYPGMTPGQLTDMRSASVNN 1221


>gi|78099743|gb|ABB20894.1| dicer-like protein [Oryza sativa Indica Group]
          Length = 1116

 Score =  196 bits (498), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 141/415 (33%), Positives = 201/415 (48%), Gaps = 45/415 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY +   L+  YP  HEG+LS +RSK V N  L K G  +     + 
Sbjct: 543  SLERLELLGDSVLKYVVGCDLFLRYPMKHEGQLSDMRSKAVCNATLHKHGIWRSLQGYVR 602

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
               F+PR  W+ PG    + +     IE  F         +P+ +    +    ++ + C
Sbjct: 603  DNAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPSHRRYIRDDPSFVVGKPC 652

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-- 956
                   D                +  K+I+DCVEAL+GAY +  G   AL  M W G  
Sbjct: 653  -------DRG-----------HRWMCSKTISDCVEALVGAYYVGGGIAAALWVMRWFGID 694

Query: 957  ----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                +K++  V    S   S   ++  ++ E  + Y F  K  LL+A+TH S     +  
Sbjct: 695  IKCDMKLLQEVKFNASHLCSLSKINDIEELEAKLKYNFSVKGLLLEAITHPSLQELGVDY 754

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGD++LD L+TRHLY       PG LTDLRSALV+N  FA   VR   H   +
Sbjct: 755  CYQRLEFLGDSVLDLLLTRHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSHLQ 814

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L   I  +V+         N E    E E  +    +VPK LGD+ ES+AGA++L
Sbjct: 815  HGSGILLGQITEYVRS--------NLECQGKESEFLQHTTCKVPKVLGDIMESIAGAVFL 866

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            D+  ++D VW+++  ++   I    +++P  P RELLEL      F   E  + G
Sbjct: 867  DTDFNVDMVWEIFEPLLSPLITPDKLALP--PYRELLELCSHIGCFLNSECTSKG 919



 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 99/492 (20%), Positives = 201/492 (40%), Gaps = 73/492 (14%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D  + ++ +YC +LP D +    P     E+  +D  +F C++ LP N+  + S+ G   
Sbjct: 59  DCCVNLIRKYCEKLPKDRYFMPKPSF---EVTIEDG-LFKCTLTLPRNAAFQ-SIVGPLS 113

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            +  L+ ++ ++EAC+ L++L EL++ L+P+T+E ++    T        +  + P +TK
Sbjct: 114 SSSNLSKQLVSLEACKKLHQLGELNDHLVPLTEEPMDTDFTT-----ADEKCISGPGTTK 168

Query: 122 RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE----NSPQ 177
           R++ +        +      +    L   ++   C    E       +  PE     +P 
Sbjct: 169 RKELHGTTCVLALSGTWIHDSENITLNTYRIDFLCDQEGENYAGFVLLMEPELDDDVAPS 228

Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFM---------- 227
            + +     IP    +   T  G+V+++ + + K  +  E   +     +          
Sbjct: 229 KMDLF---LIPNKMVYTTVTPRGKVQLNKKQLGKGKLFQEFFFNGIFGRLFHGSRKSGAQ 285

Query: 228 -DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS---EQIVIDWKFM--------TLI 275
            D++F K  +++          +E+ Y ++P    S   + + I W+ +         L 
Sbjct: 286 RDFIFKKGHEIQWN--------TESMYLLLPLRDSSYIQDDLSIHWEAIESCAGAVEQLW 337

Query: 276 SEHHNDV----IQDIPEKER---------ENFVFDESKFRDAVVMPWYRNQFEPTYFYVA 322
           S +  D     +  IP+K            N     S  +D+VV+  +  +       + 
Sbjct: 338 SSYQGDENVIPVNCIPQKRSGGQEEIIHLANKSLHCSSIKDSVVLSLHTGRIYTVLDLIL 397

Query: 323 EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDV--DHTSCRLNFLTPRY 380
           +         M   + + + +F +YY  KYG+ IQ+ EQPLL +   H +  L F   +Y
Sbjct: 398 DTTAEDSFDEMCKGKASPFTSFVDYYHQKYGIIIQHPEQPLLLLKQSHNAHNLLFSKLKY 457

Query: 381 VN-RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNA 439
           ++   G  L    E+    +           PEL +       + +    LPS+++RL +
Sbjct: 458 LDGSTGKPLLMEKEQIHARVP----------PELLIHLDVTTDILKSFYLLPSVIHRLQS 507

Query: 440 LLLADEIRTAVA 451
           L+LA ++R  + 
Sbjct: 508 LMLASQLRREIG 519


>gi|255547506|ref|XP_002514810.1| ATP binding protein, putative [Ricinus communis]
 gi|223545861|gb|EEF47364.1| ATP binding protein, putative [Ricinus communis]
          Length = 1388

 Score =  196 bits (497), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 158/456 (34%), Positives = 220/456 (48%), Gaps = 74/456 (16%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA+   L+ TY N HEG LS  + K +SN  L +LG        +    F
Sbjct: 991  LETLGDSFLKYAVGQQLFKTYQNHHEGLLSIKKDKLISNATLCRLGCDSKIPGFIRNESF 1050

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+ NWL                   P  +  C SL   + LS  + + I +++      
Sbjct: 1051 DPK-NWL------------------IPDEISGCYSLSE-EILSNGRKMYIKRRR------ 1084

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV---- 959
                               + +K IAD VEALIGAYL   G    LLF+ W+G+K     
Sbjct: 1085 ------------------KLKEKMIADVVEALIGAYLSTGGEIAGLLFLDWIGIKADFLN 1126

Query: 960  IPPV----TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
            +P       NPE K+++   L+        + Y F+D   L++A+TH SY L  +  CYQ
Sbjct: 1127 MPYERGFEMNPE-KYVNICHLESL------LKYSFRDPCLLVEALTHGSYMLPEIPRCYQ 1179

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGD++LDYLIT HLYE     SPG LTD+RSA VNN  +A  AVR G H +  H S
Sbjct: 1180 RLEFLGDSVLDYLITVHLYEKYPGMSPGLLTDMRSASVNNDCYAQSAVREGLHKYILHAS 1239

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH+ I   V          N + +  E       +I  PK LGD+ ES+AGAI++DSG
Sbjct: 1240 QKLHKDIVSTVA---------NCKEFSSESTFGWESEISFPKVLGDVIESLAGAIFVDSG 1290

Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTV 1194
             + + V+     +++  I   ++ +   P REL EL + ++    KP    +     VTV
Sbjct: 1291 YNKEVVFNSIRPLLEPLITPETIRL--HPTRELTELCQKQHFDRRKPVVSRNNGMSCVTV 1348

Query: 1195 EVFGKG---SYKGIGRNYCIAKCTAAKCALKHLKSA 1227
            EV   G    +         AK  A+K  L+ LK +
Sbjct: 1349 EVEANGVVFKHTSAAAERKTAKRLASKEVLRALKDS 1384



 Score = 69.3 bits (168), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 202/477 (42%), Gaps = 96/477 (20%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + +++ ++  YC+RLPSD + +  P   I      D  M  C++ LP +  +   SV G+
Sbjct: 545 LTSSVSLIYFYCSRLPSDGYFKPTPRCLI------DKEMERCTLLLPKSCSIHTISVEGN 598

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFI------NLYENTEPVVPKTP 111
               K++  + A +EAC+ L+++  L+++L+P  V +E +        Y++  P+    P
Sbjct: 599 ---VKIIKQK-ACLEACKQLHKIGALNDNLVPDIVVEETVAQQSGNGPYDDEHPMY-FPP 653

Query: 112 EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP---------DEQ 162
           E+          ++Y                  CYL  +       IP          E 
Sbjct: 654 ELVGQASQKSEAKYY------------------CYLIELNQNFVYEIPVHNFVLAMRSEL 695

Query: 163 NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSN 222
                 +     + +GL ++  KYI            GE+ ++ E     V++  + L  
Sbjct: 696 ESDILGLDLDLEADRGLLMVKLKYI------------GEIHLTPE----TVIMCRKFLIT 739

Query: 223 TL-IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHND 281
            L + +D+   K+  + K L L   N  E  Y ++P V   ++  IDW  +T +   + +
Sbjct: 740 VLKVLVDHSIDKLEDILKGLKL--RNGPEIDYLLLPLVGSCQKPSIDWDAVTSVLFSYEN 797

Query: 282 VIQD---IPEKER------ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
           V++D    P KE       ++ V  +   +++VV   +  +     +++   + +++  S
Sbjct: 798 VLEDHKNCPLKEAACVIQTKDGVVCKCTLQNSVVYTPHNGKV----YFIDGTLDHLNGHS 853

Query: 333 MFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTS 392
           +   R   ++++ EYY  ++G+++   +Q LL   H      F    Y+NR        S
Sbjct: 854 LLELRNGYHKSYMEYYKDQHGIKLHFDQQLLLRGRHI-----FPLQNYLNRCRQQKEKDS 908

Query: 393 EETRREIRESLGKKQLLVPELCLIHPFPASL--WRKSVSLPSILYRLNALLLADEIR 447
           +    E          L PELC I   P S+  +     +PSI++RL +LL+A  ++
Sbjct: 909 QNAYVE----------LPPELCHIFMSPISISSFYSFTFVPSIMHRLESLLIASNLK 955



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L Y IT+ LY  YP +  G L+ +RS  V+N
Sbjct: 1179 QRLEFLGDSVLDYLITVHLYEKYPGMSPGLLTDMRSASVNN 1219


>gi|242039323|ref|XP_002467056.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
 gi|241920910|gb|EER94054.1| hypothetical protein SORBIDRAFT_01g018890 [Sorghum bicolor]
          Length = 1586

 Score =  195 bits (496), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 143/426 (33%), Positives = 204/426 (47%), Gaps = 47/426 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY I   L+  YP  HEG LS +RSK V N  L K G  +     + 
Sbjct: 999  SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNATLHKHGICRSLQGYIR 1058

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
             T F+PR  W+ PG    + +     IE  F         +P   E   +    I+ + C
Sbjct: 1059 DTAFDPR-RWVAPGQISLRPFPCNCGIETAF---------VPFTGEYISDDPSFIVGKPC 1108

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                   D                +  K+++DCVEAL+GAY +  G   A+  M W G+ 
Sbjct: 1109 -------DRG-----------HRWMCSKTVSDCVEALVGAYYVGGGITAAIWVMRWFGID 1150

Query: 959  VIPPVT-------NPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            V   +        N  +  L  +  L  F++ E  + Y F  K  LL+A++H S     +
Sbjct: 1151 VRCDMELVQKAKYNSNASQLCYLSKLKVFEELEAKLKYNFSVKGLLLEAVSHPSLQELGV 1210

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
              CYQRLEFLGD++LD LIT+HLY       PG LTDLRSALV+N  FA   VR   H  
Sbjct: 1211 DYCYQRLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSALVSNENFAQAVVRNNIHSH 1270

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L E +  +V+         + EY+  E E  +    + PK LGD+ ES+ GAI
Sbjct: 1271 LQHGSGILLEQVTEYVRS--------SLEYHGKENEFVQQATFKAPKVLGDIMESITGAI 1322

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            ++D   ++D VWK+   ++   I    +++P  P RELLEL      F K +  + G  +
Sbjct: 1323 FIDVNFNVDLVWKIVEPLLSPMITPDKLALP--PYRELLELCSHLGCFIKSKCTSKGEEL 1380

Query: 1191 RVTVEV 1196
             + + V
Sbjct: 1381 IIEMTV 1386



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 35/120 (29%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           ++ +YC +LP D +    P   +    +D S  + C++ +P N+   RS+ G    T  L
Sbjct: 520 LIYKYCEKLPKDRYYLPKPCFEVG--LKDGS--YQCALTMPPNAAF-RSIVGPPSSTCNL 574

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
           A ++  +EAC+ L+EL ELD+ L+P+T+E +++  +T        +  + P +TKR++ +
Sbjct: 575 AKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDT-----TDKKCVSGPGTTKRKELH 629



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 36/154 (23%), Positives = 72/154 (46%), Gaps = 9/154 (5%)

Query: 299 SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQN 358
           S  +D+VV+  +  +       + +   +     M+  + + + +F +YY  KYG+ IQ+
Sbjct: 830 STVKDSVVLSLHTGRIYSVLDLILDTTADDSFDEMYNGKASPFSSFVDYYHQKYGIVIQH 889

Query: 359 LEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH- 417
             QPLL +  +    N L  +   + G    +T      E +E +  +   VP   LIH 
Sbjct: 890 PGQPLLLLKQSHNAHNLLFSKMKYQDG----STGNPLLVE-KEQIHAR---VPPELLIHI 941

Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
                + +    LPS+++R+ +L+LA ++R  ++
Sbjct: 942 DVTTDILKSFYLLPSVMHRVQSLMLASQLRRDIS 975


>gi|302819693|ref|XP_002991516.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
 gi|300140718|gb|EFJ07438.1| hypothetical protein SELMODRAFT_448444 [Selaginella moellendorffii]
          Length = 1719

 Score =  195 bits (495), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 135/403 (33%), Positives = 193/403 (47%), Gaps = 61/403 (15%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S + LE +GDSFLKY +T  L+  Y   HEG+LS  RS+   N  L +L K     
Sbjct: 1289 HEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALHQLAKSSGIA 1348

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
            E +   +F P  NW  PG                                    +L    
Sbjct: 1349 EYIRDEEFNP-SNWTGPG------------------------------------MLTSDS 1371

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
             KC     + + N ++           I  K++AD VEALIGAYL   GP  A+  M  L
Sbjct: 1372 SKCRHQQGSYE-NEENYFSSCANGHRGIRRKALADVVEALIGAYLATSGPPSAMELMKQL 1430

Query: 956  GLKVIPPVTNPESKHLSDVLLDGF-------DKFEESINYRFKDKSYLLQAMTHASYFLN 1008
            G+ +   +    S   + +  + F       +  E  + Y+F+++S L++A+THAS   N
Sbjct: 1431 GIDIEFDIGLLASARQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQ-PN 1489

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             L  CYQRLEFLGD +LD+L++RHL+E      PGTLTDLRSA VNN  FA L +R G H
Sbjct: 1490 CLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVLRHGLH 1548

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
               +H S  L   I++FV+   E            +  C   ED+  PK LGDL ES+ G
Sbjct: 1549 QHLQHGSVELDCEIRKFVQNVKEKP----------DASC--FEDLSAPKVLGDLLESITG 1596

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AI++D+   L+ +W+V   ++   +   ++     P+R L+EL
Sbjct: 1597 AIFVDTNFDLEKLWRVVLPLLSPLVTPATLRF--HPVRILMEL 1637



 Score = 53.1 bits (126), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 117/504 (23%), Positives = 192/504 (38%), Gaps = 125/504 (24%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +++  ++ YCARL  D +    P  +  +        F C++  P N+PL RSV G    
Sbjct: 856  DSVSFIHEYCARL-GDRYYNAKPKFSFKD-------SFVCTVEFPPNAPL-RSVEGPLRR 906

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKT--PEIETY--PD 118
            T+ LA + A ++ACR                     LY+  E V P T  P+++ +   D
Sbjct: 907  TEQLAKKAACLQACR--------------------KLYDMGE-VRPDTLCPDVDDFDEED 945

Query: 119  STKRRQFYHKRMASCFTNCRPSVNTPCYLY---AVKMKL--TCPIPDEQNKRGRKIHPPE 173
             + R+    KR    F+  +P +    +++    V+++    C +          I PPE
Sbjct: 946  QSMRKNESGKR-KEIFSTAKPLIFEGSWVFNESGVQLQFYKICFV----------IEPPE 994

Query: 174  NSPQGLAILTTKYIPKVCSFPIFTRC---GEVEVS-IELIDKNVVLSEENLSNTLIFMDY 229
            +                 +F     C    EV  S + L  +N V++        I +D 
Sbjct: 995  SRTYS-------------NFGFLVNCVIDAEVTDSEVTLFSRNRVVNARVHRVGPIQLDA 1041

Query: 230  LFTKVLKLKKYLML---FD--PNCS----------ENSYFIVPTVSDSEQIVIDWK---- 270
               K  K  + L+L   F+    CS            ++ ++P   D++ I  DW     
Sbjct: 1042 NQVKAAKAYQELLLNGAFNRLARCSGSPQEILWNKSQAFLLLPVHDDNDSI--DWTSVHA 1099

Query: 271  ----FMTLISEHHNDVIQD---IPEKERE------NFVFDESKFRDAVVMPWYRNQFEPT 317
                + TL S        D   + EK         N     S  +D VV   +  +    
Sbjct: 1100 TAGVYRTLCSNFSPSSPMDGDGVGEKTHADVLCTANGYVHSSALQDMVVATVHNGRL--- 1156

Query: 318  YFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNF-L 376
             F V  ++ N    S+ P R  TY    +YY  KY   ++  EQPLL    T    N  +
Sbjct: 1157 -FCVTGVLENFTAASLLPKRGFTYI---DYYKDKYQRTLRLPEQPLLKAKPTHAFHNLPI 1212

Query: 377  TPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYR 436
             P+             E +R+E  ES  +   L PELCL     + L R    +PS L+R
Sbjct: 1213 RPK-----------EQEGSRQE--ESFVE---LPPELCLCLEIKSGLIRSLYFVPSFLHR 1256

Query: 437  LNALLLADEIRTAVASEIGLGKVI 460
              + + A ++R+ +   I   K++
Sbjct: 1257 FTSTVCAIQLRSPLWPWIPAAKIL 1280


>gi|229299830|gb|ACQ55516.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAMDASAPEAE 168


>gi|229299834|gb|ACQ55518.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAMDASAPEAE 168


>gi|229299736|gb|ACQ55469.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 10/178 (5%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
           +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V
Sbjct: 122 VDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDTTA--PEVEDEVELDKEV 177


>gi|229299750|gb|ACQ55476.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (494), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAMDASAPEAE 168


>gi|391328911|ref|XP_003738926.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1347

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 135/424 (31%), Positives = 209/424 (49%), Gaps = 97/424 (22%)

Query: 765  FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
              F+   DLEN  GPSP                  +RLE IGDSFLK A+T+  Y    +
Sbjct: 968  MKFNVPTDLENCDGPSPADILKALTPLYITDIVDSERLEVIGDSFLKIAVTLHFYQELIS 1027

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
             +EG+L+  R + +SN +L +    K   E +   KF  R N++PPG             
Sbjct: 1028 SNEGELTTRRCRIISNMSLLQHAVPKGIHEMVECVKFRVRVNFVPPG------------- 1074

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
                               + E+ L  +  +C+  D   +M+ +S              K
Sbjct: 1075 -------------------AQERAL--LSGRCLKAD-VAEMSRRS---------QYYKSK 1103

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFD------ 980
              AD VEALIG YL +CGP GAL ++ WL +        P  ++     LD F+      
Sbjct: 1104 MCADSVEALIGVYLEKCGPVGALEYLRWLDI--------PLGRYNEGDFLDRFELPLPEP 1155

Query: 981  -----------------KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDA 1023
                               +E++ Y F+++  +L+A+TH SY  N LT  Y+RLEFLGDA
Sbjct: 1156 LREDKKADVERWRKEILTVQETLGYIFQNELLVLEAITHKSYRYNRLTRSYERLEFLGDA 1215

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            ++DYLI++++Y  +   +PG LTD+R++LV+N  FA++ V    H   +H SP L ++  
Sbjct: 1216 VIDYLISKYIYTADSDLNPGQLTDVRASLVSNNTFAAIIVDNKLHTVMQHHSPLLLKLTN 1275

Query: 1084 RFVKMQAENDFTLNQEYYLM---EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            RFV+ + E +  ++   ++M   + + ++ E +++PK LGDL ES+ GA++LDSG  LD 
Sbjct: 1276 RFVEYR-ETEKRIDILAHMMGEEDEDLEDLEQVDIPKPLGDLMESLMGAVFLDSGKDLDV 1334

Query: 1141 VWKV 1144
            VW V
Sbjct: 1335 VWAV 1338



 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 126/474 (26%), Positives = 195/474 (41%), Gaps = 79/474 (16%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           I+  YC  L SD +T   P   + E     S +  C I LP  SPL+  V G    + L 
Sbjct: 545 ILQWYCDSLGSDRYTLQKPDY-VYETAASPSKLVRCGIHLPRQSPLQMIVYGAWEESSLT 603

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEI-ETYPDSTKRRQF 125
           A   AA+     LY L EL   L+P  K  + L    + V  +  ++  T P +      
Sbjct: 604 ARTSAAINVLSRLYSLGELTEHLLP-RKRKVALEVTIDEVSAEVAQLFRTGPATQTNLIL 662

Query: 126 YHKRMASCFT-NCRPSVNTPCYLYAVKMKL-TCPIPDEQNKRGRKIHPPENSPQGLAILT 183
             +RM+S       P +     LY   +++     PD  + R      P + P  + +L 
Sbjct: 663 CPRRMSSSLQPTSVPELPVDLILYKFSLRIDKLNDPDHLDSR---YMDPADEPICMGLLV 719

Query: 184 TKYIPK-VCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLM 242
              +P+ V  FP++TR G   V+++   + + L E        F  YLF +VL++    M
Sbjct: 720 KIALPECVPEFPVYTRAGTEMVAVDKC-RMITLHESQYKLCAEFNRYLFDEVLRIPS--M 776

Query: 243 LFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFR 302
           +FD    E    IVP + ++    + W  M L        + +IP  E            
Sbjct: 777 VFD---EETIPVIVPVLDNN----VHWDLMELAVSD----VSEIPLSE------------ 813

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           D+VV        E T     E+  NVH +  +          E+ +S   G+ ++ + + 
Sbjct: 814 DSVV------NIEAT-----ELGPNVHEKRCY---------VEKIFSKDDGI-VRVVPK- 851

Query: 363 LLDVDHTSCRLNFLTPRYVNRKG-INLATTSEETRREIRESLGKKQLLVPEL---CLIHP 418
                    RL  + PR+ +R G ++L TT  + R            L P L   C +  
Sbjct: 852 -----RVQKRLEMIFPRHEDRLGNVSLRTTKRKPRS-----------LAPRLASKCKVEK 895

Query: 419 FPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
             A +W K+ S+PSI+YRLN LL+ADE+R A+    GLG+  L     W P   
Sbjct: 896 LSAPVWNKATSVPSIIYRLNRLLVADELRVAIVRGSGLGR--LRPLTPWKPLEM 947


>gi|229299778|gb|ACQ55490.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/181 (56%), Positives = 125/181 (69%), Gaps = 10/181 (5%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNE 512
           +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V +
Sbjct: 122 VDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDSTA--PEVEDEVELDKEVPK 179

Query: 513 I 513
           +
Sbjct: 180 V 180


>gi|229299800|gb|ACQ55501.1| dicer-1 [Anopheles gambiae M]
 gi|229299804|gb|ACQ55503.1| dicer-1 [Anopheles gambiae M]
 gi|229299872|gb|ACQ55537.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEAE 168


>gi|229299784|gb|ACQ55493.1| dicer-1 [Anopheles arabiensis]
 gi|229299786|gb|ACQ55494.1| dicer-1 [Anopheles arabiensis]
 gi|229299788|gb|ACQ55495.1| dicer-1 [Anopheles arabiensis]
 gi|229299900|gb|ACQ55551.1| dicer-1 [Anopheles arabiensis]
 gi|229299906|gb|ACQ55554.1| dicer-1 [Anopheles arabiensis]
 gi|229299910|gb|ACQ55556.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/179 (56%), Positives = 123/179 (68%), Gaps = 10/179 (5%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
            +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASA--PEVEDEVELDKEV 177


>gi|229299720|gb|ACQ55461.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 10/178 (5%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
           +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V
Sbjct: 122 VDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDSTA--PEVEDEVELDKEV 177


>gi|229299886|gb|ACQ55544.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|255550219|ref|XP_002516160.1| Ribonuclease III, putative [Ricinus communis]
 gi|223544646|gb|EEF46162.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1660

 Score =  194 bits (493), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 198/398 (49%), Gaps = 47/398 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY+++  L+  YP  HEG+LS  R++ V N  L +LG        + 
Sbjct: 1084 SMERLELLGDSVLKYSVSCDLFLRYPTKHEGQLSAQRTRAVCNSTLHQLGIGCKLQGYIR 1143

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
             + F PR  W+ PG                PA   +C    +  E+  +   +       
Sbjct: 1144 DSAFIPR-YWVAPGQQ--------------PAFYVSCTCGVDTLEVPLDAKFQ------- 1181

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                T D  VQ  +  +      +  K+I+DCVEA+IGAY +  G   AL  M WLG+ V
Sbjct: 1182 ----TEDPKVQIAICCS-KGHRWMCSKTISDCVEAVIGAYYVSGGLMAALHVMQWLGMDV 1236

Query: 960  ------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  +  +    S        D     E  + Y F  K  L +AMTHAS     +  C
Sbjct: 1237 EFDPSLVDKIIKTASVRSYTPKEDEIKGIESKLGYTFSVKFLLQEAMTHASMQEQGIGYC 1296

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD++LD LIT HLY++  +  PG LTDLRSA V+N  FA + VR   +   +H
Sbjct: 1297 YQRLEFLGDSVLDLLITWHLYQNHTSMDPGELTDLRSACVSNENFAQVVVRRDLYKHLQH 1356

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I+ +++   E+D            E  +A   + PKALGDL ES+AGA+ +D
Sbjct: 1357 CSTLLLSQIKEYLESFHESD------------EVAKATGPKGPKALGDLLESIAGAMLID 1404

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            + ++LD VW+++  ++       ++ +P  P+REL++L
Sbjct: 1405 AKLNLDEVWRIFMPLLSPLATPQNLELP--PLRELMQL 1440



 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 110/496 (22%), Positives = 201/496 (40%), Gaps = 77/496 (15%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D+++ ++ RYC++LPSD +    P       ++     F C + LP ++  + ++ G   
Sbjct: 599  DSSVTLIQRYCSKLPSDRYFTPRPTFEFECFEQS----FQCKMMLPASAAFQ-TIVGPVC 653

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
             ++ LA ++A +EAC+ L+++  LD+ L+P  +E     E+   V  K         +TK
Sbjct: 654  RSQQLAKQLACLEACKQLHQMGALDDHLLPSVEEPT---EDDHTVRRKGSLAGA--GTTK 708

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ-NKRGRKIHPPENSPQGLA 180
            R++ +        +            +A K + +C I  E+ +     I    +   G  
Sbjct: 709  RKELHGTTPIHALSGSWGENLDGATFHAYKFEFSCSIVSEKYSGYILLIESKLDDDVGNI 768

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
             L    + K     + + CG+V +  E + K     E       +F + LF K+    K 
Sbjct: 769  ELDLFLVRKTVRASV-SSCGQVHLDAEQMMKAKCFHE-------LFFNALFGKLFSGSKS 820

Query: 241  L-----MLFDPNCS-----ENSYFIVP----TVSDSEQIVIDWKFMT------------- 273
                   L     S      N Y ++P    + S  E   I+W+ +              
Sbjct: 821  SRSPREFLLQKETSLLWILSNMYLLLPLEAFSASSDESWKINWRGVNGCSNVVEFLKKNC 880

Query: 274  -LISEHHND--VIQDIPEKERENFV------FDESKFRDAVVMPWYRNQFEPTYFYVAEI 324
             L +EH+N   V   + E    N V       D  + +D VV+  +  +     + V E+
Sbjct: 881  FLGAEHYNGERVRSSVTECSGGNAVHFANISVDVERVKDMVVLAIHTGKI----YSVVEV 936

Query: 325  MTNVHPRSMFPSRT----NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTP-- 378
            + +    S F        + + TF EY++ KYG+ +    QPLL +  +    N L P  
Sbjct: 937  VGDASAESPFEQNVGGAPSKFSTFSEYFNKKYGIVLLRPRQPLLLLKQSHKPHNLLNPPD 996

Query: 379  RYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLN 438
                + G+ +A   +  R            + PEL +    P    + S  LPS++YRL 
Sbjct: 997  EDTLKDGLVVAKQRQFAR------------MPPELLVSIDVPIQTLKSSYLLPSLMYRLE 1044

Query: 439  ALLLADEIRTAVASEI 454
            +L+LA ++R  +A ++
Sbjct: 1045 SLMLASQLRQEIACQV 1060


>gi|449489290|ref|XP_004158269.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3a-like [Cucumis sativus]
          Length = 1639

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 196/403 (48%), Gaps = 56/403 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  +P  HEG+LS  R + + N  L  LG +      + 
Sbjct: 1074 SLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIR 1133

Query: 840  ATKFEPRDNWLPPGYFV--PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
             + F+PR  W+ PG     P   +  +     P     C   P           +++  K
Sbjct: 1134 DSAFDPR-RWVAPGQCTNRPVPCKCGVDTVEVPLHDKFCTEDP-----------KVVLGK 1181

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            C D                      +  K+IADC EALIGAY ++ G   AL  M WLG+
Sbjct: 1182 CCD-----------------KGHRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGI 1224

Query: 958  KV-------IPPVTNPESKH--LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
             V       +  +T+   +   L D  +      E  I Y F  K  LL+A+TH S    
Sbjct: 1225 DVNLDVALVVDAITSASLRSCPLGDTEIA---TLESKIGYDFAVKGLLLEAVTHTSDQEI 1281

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             +  CYQRLEFLGD++LD LIT H Y++     PG LTDLRSA VNN  FA +AVR    
Sbjct: 1282 GVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQ 1341

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
               +H S  L   I  +VK  +E+  T  +  +  +G          PK LGD+ ES+AG
Sbjct: 1342 QHLQHCSGLLMSQITEYVKYLSESQDT-GKPLHGNKG----------PKVLGDMVESIAG 1390

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AI +D+ ++LD VWK+Y  ++   +    + +P  P+REL+EL
Sbjct: 1391 AILIDTKLNLDEVWKIYKPLLTPFVTPDKLELP--PLRELIEL 1431



 Score = 71.6 bits (174), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 106/508 (20%), Positives = 202/508 (39%), Gaps = 97/508 (19%)

Query: 2    DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            D+++ +V +YC +LP D +    PI  +S  +      + C + LP  + L+ ++ G   
Sbjct: 577  DSSVGLVYQYCKKLPGDKYFSPKPIFQLSYGEGS----YECQLTLPPTAALQ-TIVGPST 631

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                L+ ++  +EAC+ L+++  L++ L+P  +E      +   +  K+    +   STK
Sbjct: 632  RNSNLSKQLVCLEACKKLHQMGALNDHLLPSVEEI-----SESDMGLKSNASTSRAGSTK 686

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR-----GRKIHPPENSP 176
            R++ + +      +             A K   +C +  E           K+    ++ 
Sbjct: 687  RKELHGRTAIRALSGTWEEQVEGTTFQAYKFDFSCSVIYEVYSGFVLLIESKLDDDVSNF 746

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL- 235
            +    L +K +    SF      GEV +  E I K     E       +F + LF ++  
Sbjct: 747  ELELYLLSKMVKASVSFG-----GEVHLDAEQITKAKCFQE-------LFFNGLFGRLFI 794

Query: 236  ------KLKKYLMLFDPN---CSENSYFIVPT--VSDSEQIV--IDWKFM---------- 272
                  K + +L+  D N    S N Y ++P     DS   +  I W+ +          
Sbjct: 795  GSKTTGKKRDFLLQKDTNPLWISSNMYLLLPVDLPDDSTHDLWKIHWRAIDSCVSVVEFL 854

Query: 273  ----TLISEHH---NDVIQDIPEKERE--------------NFVFDESKFRDAVVMPWYR 311
                +L +E +     +    P +                 N V D    +D VV+  + 
Sbjct: 855  KKNSSLDAERNYGAGAISDSSPSRNNSTETGSNAASVIHFANCVLDVHSLKDRVVLAIHT 914

Query: 312  NQFEPTYFYVAEIMTNVHPRSMFPSRTNT----YQTFEEYYSLKYGLQIQNLEQPLLDVD 367
             +     + + E+++N    S F   ++     Y TF +Y++ +YG+ +   +QPLL + 
Sbjct: 915  GRI----YSIVEVVSNTSAESPFDGNSDKGPPDYITFADYFNKRYGISLSFPKQPLLRLK 970

Query: 368  HTSCRLNFLTPRYVNRK--GINLATTSEETRREIRESLGKKQLLV---PELCLIHPFPAS 422
             +    N L    VN K  G +   +    +R         Q+ V   PEL L    P  
Sbjct: 971  QSHNPHNLL----VNFKDEGFDKLPSGPAFKR--------PQMHVHMPPELVLSMDVPKG 1018

Query: 423  LWRKSVSLPSILYRLNALLLADEIRTAV 450
            + + S  LPS+++R  +L+LA ++R  +
Sbjct: 1019 VLKSSYLLPSLIHRFESLMLASQLRKEI 1046



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 981  KFEESINYRFKD----KSYLLQAMTHASYFLNTLTDC----YQRLEFLGDAILDYLITRH 1032
            +  + INY         S +L+A+T       TL  C     +RLE LGD++L Y ++ H
Sbjct: 1041 QLRKEINYHSNSLGISSSLILEALT-------TLGSCENFSLERLELLGDSVLKYAVSCH 1093

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQR 1084
            L+        G L+  R  ++ N    +L  + G   + +         ++PG  +   R
Sbjct: 1094 LFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPG--QCTNR 1151

Query: 1085 ---------FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                      V++   + F       ++   CD+     V K + D  E++ GA Y+D G
Sbjct: 1152 PVPCKCGVDTVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGG 1211

Query: 1136 M 1136
            +
Sbjct: 1212 I 1212


>gi|449453061|ref|XP_004144277.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Cucumis sativus]
          Length = 1359

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 138/403 (34%), Positives = 196/403 (48%), Gaps = 56/403 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  +P  HEG+LS  R + + N  L  LG +      + 
Sbjct: 804  SLERLELLGDSVLKYAVSCHLFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIR 863

Query: 840  ATKFEPRDNWLPPGYFV--PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
             + F+PR  W+ PG     P   +  +     P     C   P           +++  K
Sbjct: 864  DSAFDPR-RWVAPGQCTNRPVPCKCGVDTVEVPLHDKFCTEDP-----------KVVLGK 911

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            C D                      +  K+IADC EALIGAY ++ G   AL  M WLG+
Sbjct: 912  CCDKG-----------------HRWVVSKTIADCAEALIGAYYVDGGIIAALHVMKWLGI 954

Query: 958  KV-------IPPVTNPESKH--LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
             V       +  +T+   +   L D  +      E  I Y F  K  LL+A+TH S    
Sbjct: 955  DVNLDVALVVDAITSASLRSCPLGDTEIA---TLESKIGYDFAVKGLLLEAVTHTSDQEI 1011

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             +  CYQRLEFLGD++LD LIT H Y++     PG LTDLRSA VNN  FA +AVR    
Sbjct: 1012 GVNYCYQRLEFLGDSVLDLLITWHYYQNYSDIDPGELTDLRSASVNNENFAQVAVRRNLQ 1071

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
               +H S  L   I  +VK  +E+  T  +  +  +G          PK LGD+ ES+AG
Sbjct: 1072 QHLQHCSGLLMSQITEYVKYLSESQDT-GKPLHGNKG----------PKVLGDMVESIAG 1120

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AI +D+ ++LD VWK+Y  ++   +    + +P  P+REL+EL
Sbjct: 1121 AILIDTKLNLDEVWKIYKPLLTPFVTPDKLELP--PLRELIEL 1161



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 42/181 (23%), Positives = 74/181 (40%), Gaps = 34/181 (18%)

Query: 981  KFEESINYRFKD----KSYLLQAMTHASYFLNTLTDC----YQRLEFLGDAILDYLITRH 1032
            +  + INY         S +L+A+T       TL  C     +RLE LGD++L Y ++ H
Sbjct: 771  QLRKEINYHSNSLGISSSLILEALT-------TLGSCENFSLERLELLGDSVLKYAVSCH 823

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--------LSPGLHEVIQR 1084
            L+        G L+  R  ++ N    +L  + G   + +         ++PG  +   R
Sbjct: 824  LFLKFPEKHEGQLSSRRQQVICNATLHALGTKCGLQGYIRDSAFDPRRWVAPG--QCTNR 881

Query: 1085 ---------FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                      V++   + F       ++   CD+     V K + D  E++ GA Y+D G
Sbjct: 882  PVPCKCGVDTVEVPLHDKFCTEDPKVVLGKCCDKGHRWVVSKTIADCAEALIGAYYVDGG 941

Query: 1136 M 1136
            +
Sbjct: 942  I 942



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 43/159 (27%), Positives = 75/159 (47%), Gaps = 21/159 (13%)

Query: 305 VVMPWYRN-----QFEPTYFY-VAEIMTNVHPRSMFPSRTNT----YQTFEEYYSLKYGL 354
           +V P  RN     Q      Y + E+++N    S F   ++     Y TF +Y++ +YG+
Sbjct: 626 IVGPSTRNSNLSKQLHTGRIYSIVEVVSNTSAESPFDGNSDKGPPDYITFADYFNKRYGI 685

Query: 355 QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV---P 411
            +   +QPLL +  +    N L    VN K  +   TS++       +  + Q+ V   P
Sbjct: 686 SLSFPKQPLLRLKQSHNPHNLL----VNFK--DEGNTSDKLPSG--PAFKRPQMHVHMPP 737

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           EL L    P  + + S  LPS+++R  +L+LA ++R  +
Sbjct: 738 ELVLSMDVPKGVLKSSYLLPSLIHRFESLMLASQLRKEI 776


>gi|229299794|gb|ACQ55498.1| dicer-1 [Anopheles gambiae S]
 gi|229299796|gb|ACQ55499.1| dicer-1 [Anopheles gambiae M]
 gi|229299798|gb|ACQ55500.1| dicer-1 [Anopheles gambiae M]
 gi|229299802|gb|ACQ55502.1| dicer-1 [Anopheles gambiae M]
 gi|229299806|gb|ACQ55504.1| dicer-1 [Anopheles gambiae M]
 gi|229299812|gb|ACQ55507.1| dicer-1 [Anopheles gambiae M]
 gi|229299816|gb|ACQ55509.1| dicer-1 [Anopheles gambiae S]
 gi|229299818|gb|ACQ55510.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEAE 168


>gi|229299696|gb|ACQ55449.1| dicer-1 [Anopheles gambiae S]
 gi|229299708|gb|ACQ55455.1| dicer-1 [Anopheles gambiae S]
 gi|229299710|gb|ACQ55456.1| dicer-1 [Anopheles gambiae S]
 gi|229299712|gb|ACQ55457.1| dicer-1 [Anopheles gambiae S]
 gi|229299714|gb|ACQ55458.1| dicer-1 [Anopheles gambiae S]
 gi|229299716|gb|ACQ55459.1| dicer-1 [Anopheles gambiae S]
 gi|229299718|gb|ACQ55460.1| dicer-1 [Anopheles gambiae S]
 gi|229299722|gb|ACQ55462.1| dicer-1 [Anopheles gambiae S]
 gi|229299724|gb|ACQ55463.1| dicer-1 [Anopheles gambiae S]
 gi|229299726|gb|ACQ55464.1| dicer-1 [Anopheles gambiae S]
 gi|229299728|gb|ACQ55465.1| dicer-1 [Anopheles gambiae S]
 gi|229299730|gb|ACQ55466.1| dicer-1 [Anopheles gambiae S]
 gi|229299732|gb|ACQ55467.1| dicer-1 [Anopheles gambiae S]
 gi|229299734|gb|ACQ55468.1| dicer-1 [Anopheles gambiae S]
 gi|229299738|gb|ACQ55470.1| dicer-1 [Anopheles gambiae S]
 gi|229299740|gb|ACQ55471.1| dicer-1 [Anopheles gambiae S]
 gi|229299742|gb|ACQ55472.1| dicer-1 [Anopheles gambiae S]
 gi|229299744|gb|ACQ55473.1| dicer-1 [Anopheles gambiae S]
 gi|229299746|gb|ACQ55474.1| dicer-1 [Anopheles gambiae S]
 gi|229299748|gb|ACQ55475.1| dicer-1 [Anopheles gambiae S]
 gi|229299754|gb|ACQ55478.1| dicer-1 [Anopheles gambiae S]
 gi|229299756|gb|ACQ55479.1| dicer-1 [Anopheles gambiae S]
 gi|229299760|gb|ACQ55481.1| dicer-1 [Anopheles gambiae S]
 gi|229299764|gb|ACQ55483.1| dicer-1 [Anopheles gambiae S]
 gi|229299768|gb|ACQ55485.1| dicer-1 [Anopheles gambiae S]
 gi|229299772|gb|ACQ55487.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 10/178 (5%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
           +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V
Sbjct: 122 VDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDSTA--PEVEDEVELDKEV 177


>gi|229299700|gb|ACQ55451.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299894|gb|ACQ55548.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299890|gb|ACQ55546.1| dicer-1 [Anopheles arabiensis]
 gi|229299892|gb|ACQ55547.1| dicer-1 [Anopheles arabiensis]
 gi|229299896|gb|ACQ55549.1| dicer-1 [Anopheles arabiensis]
 gi|229299898|gb|ACQ55550.1| dicer-1 [Anopheles arabiensis]
 gi|229299908|gb|ACQ55555.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299822|gb|ACQ55512.1| dicer-1 [Anopheles gambiae M]
 gi|229299826|gb|ACQ55514.1| dicer-1 [Anopheles gambiae S]
 gi|229299902|gb|ACQ55552.1| dicer-1 [Anopheles arabiensis]
 gi|229299904|gb|ACQ55553.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299790|gb|ACQ55496.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299684|gb|ACQ55443.1| dicer-1 [Anopheles gambiae S]
 gi|229299688|gb|ACQ55445.1| dicer-1 [Anopheles gambiae S]
 gi|229299752|gb|ACQ55477.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQDGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299858|gb|ACQ55530.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (492), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 118/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE      ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEHKIAQAQEAMDASAPEAE 168


>gi|229299686|gb|ACQ55444.1| dicer-1 [Anopheles gambiae S]
 gi|229299692|gb|ACQ55447.1| dicer-1 [Anopheles gambiae S]
 gi|229299702|gb|ACQ55452.1| dicer-1 [Anopheles gambiae S]
 gi|229299704|gb|ACQ55453.1| dicer-1 [Anopheles gambiae S]
 gi|229299706|gb|ACQ55454.1| dicer-1 [Anopheles gambiae S]
 gi|229299758|gb|ACQ55480.1| dicer-1 [Anopheles gambiae S]
 gi|229299762|gb|ACQ55482.1| dicer-1 [Anopheles gambiae S]
 gi|229299766|gb|ACQ55484.1| dicer-1 [Anopheles gambiae S]
 gi|229299770|gb|ACQ55486.1| dicer-1 [Anopheles gambiae S]
 gi|229299774|gb|ACQ55488.1| dicer-1 [Anopheles gambiae S]
 gi|229299776|gb|ACQ55489.1| dicer-1 [Anopheles gambiae M]
 gi|229299782|gb|ACQ55492.1| dicer-1 [Anopheles gambiae M]
 gi|229299792|gb|ACQ55497.1| dicer-1 [Anopheles gambiae S]
 gi|229299808|gb|ACQ55505.1| dicer-1 [Anopheles gambiae S]
 gi|229299810|gb|ACQ55506.1| dicer-1 [Anopheles gambiae S]
 gi|229299814|gb|ACQ55508.1| dicer-1 [Anopheles gambiae M]
 gi|229299820|gb|ACQ55511.1| dicer-1 [Anopheles gambiae M]
 gi|229299824|gb|ACQ55513.1| dicer-1 [Anopheles gambiae S]
 gi|229299828|gb|ACQ55515.1| dicer-1 [Anopheles gambiae M]
 gi|229299836|gb|ACQ55519.1| dicer-1 [Anopheles gambiae M]
 gi|229299838|gb|ACQ55520.1| dicer-1 [Anopheles gambiae M]
 gi|229299840|gb|ACQ55521.1| dicer-1 [Anopheles gambiae M]
 gi|229299842|gb|ACQ55522.1| dicer-1 [Anopheles gambiae M]
 gi|229299844|gb|ACQ55523.1| dicer-1 [Anopheles gambiae M]
 gi|229299846|gb|ACQ55524.1| dicer-1 [Anopheles gambiae M]
 gi|229299848|gb|ACQ55525.1| dicer-1 [Anopheles gambiae M]
 gi|229299850|gb|ACQ55526.1| dicer-1 [Anopheles gambiae M]
 gi|229299852|gb|ACQ55527.1| dicer-1 [Anopheles gambiae M]
 gi|229299856|gb|ACQ55529.1| dicer-1 [Anopheles gambiae M]
 gi|229299860|gb|ACQ55531.1| dicer-1 [Anopheles gambiae M]
 gi|229299862|gb|ACQ55532.1| dicer-1 [Anopheles gambiae M]
 gi|229299864|gb|ACQ55533.1| dicer-1 [Anopheles gambiae M]
 gi|229299866|gb|ACQ55534.1| dicer-1 [Anopheles gambiae M]
 gi|229299870|gb|ACQ55536.1| dicer-1 [Anopheles gambiae M]
 gi|229299874|gb|ACQ55538.1| dicer-1 [Anopheles gambiae M]
 gi|229299876|gb|ACQ55539.1| dicer-1 [Anopheles gambiae M]
 gi|229299878|gb|ACQ55540.1| dicer-1 [Anopheles gambiae M]
 gi|229299880|gb|ACQ55541.1| dicer-1 [Anopheles gambiae M]
 gi|229299882|gb|ACQ55542.1| dicer-1 [Anopheles gambiae M]
 gi|229299884|gb|ACQ55543.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299854|gb|ACQ55528.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  194 bits (492), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299868|gb|ACQ55535.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 119/167 (71%), Gaps = 8/167 (4%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
           +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 122 VDELQEGQFQWPMLSFGWNLTDVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299690|gb|ACQ55446.1| dicer-1 [Anopheles gambiae S]
 gi|229299694|gb|ACQ55448.1| dicer-1 [Anopheles gambiae S]
 gi|229299698|gb|ACQ55450.1| dicer-1 [Anopheles gambiae S]
          Length = 216

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/168 (57%), Positives = 119/168 (70%), Gaps = 8/168 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
            +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 121 NVDELQDGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDASAPEVE 168


>gi|229299832|gb|ACQ55517.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 97/167 (58%), Positives = 119/167 (71%), Gaps = 8/167 (4%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTE 499
           +DE    + +WP  +FGW     ++K KE+     ++A D    + E
Sbjct: 122 VDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDSTAPEVE 168


>gi|229299780|gb|ACQ55491.1| dicer-1 [Anopheles gambiae M]
          Length = 216

 Score =  193 bits (491), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 102/178 (57%), Positives = 123/178 (69%), Gaps = 10/178 (5%)

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  R
Sbjct: 2   YATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKR 61

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
           E+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG   
Sbjct: 62  ENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWEN 121

Query: 461 LDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAV 510
           +DE    + +WP  +FGW     ++K KE+     ++A D      EV D  E D  V
Sbjct: 122 VDELQKGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDSTA--PEVEDEVELDKEV 177


>gi|229299888|gb|ACQ55545.1| dicer-1 [Anopheles arabiensis]
          Length = 216

 Score =  193 bits (491), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 96/162 (59%), Positives = 117/162 (72%), Gaps = 8/162 (4%)

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            Y TFEEYY  KY + IQN  QPLLDVDHTS RLNFLTPRYVNRKG+ L T+SEET+R  
Sbjct: 1   NYATFEEYYHRKYKIHIQNQRQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAK 60

Query: 400 RESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           RE+L +KQ+LVPELC IHPFPASLWR +V LP +LYR+NALLLADEIR  VA ++ LG  
Sbjct: 61  RENLEQKQILVPELCTIHPFPASLWRAAVCLPCVLYRINALLLADEIRRQVARDLRLGWE 120

Query: 460 ILDE----KVEWPPFNFGWK----MKKLKEKYGWDTKDANDV 493
            +DE    + +WP  +FGW     ++K KE+     ++A D 
Sbjct: 121 NVDELQEGQFQWPMLSFGWNLADVLRKTKEQKIAQAQEAIDA 162


>gi|357140713|ref|XP_003571908.1| PREDICTED: LOW QUALITY PROTEIN: endoribonuclease Dicer homolog
            3b-like [Brachypodium distachyon]
          Length = 1414

 Score =  192 bits (488), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/430 (33%), Positives = 205/430 (47%), Gaps = 57/430 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY I   L+  YP  HEG LS +RSK V N  L K G  +     + 
Sbjct: 904  SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNAKLHKHGVWRSLQGYIR 963

Query: 840  ATKFEPRDNWLPPGYFVPK-YLETALIEAGF-PASLWNCLSLPNLKELSPEKVLEIIKQK 897
             + F+PR  W+ PG    + +     IE  F P +       P+           ++ + 
Sbjct: 964  DSAFDPR-RWVAPGQISLRPFPCNCGIETSFVPTNGMYIRDDPSF----------VVGKP 1012

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            C                        +  K+I+DCVEAL+GAY +  G   AL  M W G+
Sbjct: 1013 CDK------------------GHRWMCSKTISDCVEALVGAYYVGGGIIAALWVMRWFGI 1054

Query: 958  KVIPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYF 1006
            ++       + K + +V L+             D+ E  + Y F  K  LL+A+TH S  
Sbjct: 1055 EI-----KCDRKLVQEVKLNASYICYLPKTNDIDELEVKLKYNFSVKGLLLEAITHPSAQ 1109

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
             + +  CYQRLEFLGD +LD LIT++LY       PG LTDLRSALV+N  FA   VR  
Sbjct: 1110 ESGVDYCYQRLEFLGDCVLDLLITQYLYVTHTDVDPGELTDLRSALVSNENFAQAVVRNN 1169

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESV 1126
             H   +H S  L E I  +V+   E     N+  +L    C      +VPK LGD+ ES+
Sbjct: 1170 IHSHLQHGSGVLLEQITEYVRFNLECQGKENE--FLQHSTC------KVPKVLGDIMESI 1221

Query: 1127 AGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLAD 1186
            AGAI++D+  ++D +W +   ++   I   ++++P  P RELLEL      F   +  + 
Sbjct: 1222 AGAIFIDTDFNVDLLWNIVEPLLSPMITPENLALP--PYRELLELCSHLGYFINSKYSSK 1279

Query: 1187 GRRVRVTVEV 1196
            G  V + + V
Sbjct: 1280 GEEVIIEMSV 1289



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 33/120 (27%), Positives = 67/120 (55%), Gaps = 10/120 (8%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           ++ +YC +LP D +    P   ++   ED S  + C++ LP N+  +R + G    T  L
Sbjct: 519 LIRKYCEKLPKDRYYMPKPSYEMA--VEDGS--YQCTLILPPNAAFQR-IIGPSCSTGNL 573

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
           A ++ ++EAC+ L++L ELD+ L+P+T+  +++  +         +  + P +TKR++ +
Sbjct: 574 AKQLVSLEACKKLHQLGELDDHLVPLTEGPMDIGNSR-----TNEKCISGPGTTKRKELH 628


>gi|357448551|ref|XP_003594551.1| Endoribonuclease Dicer [Medicago truncatula]
 gi|355483599|gb|AES64802.1| Endoribonuclease Dicer [Medicago truncatula]
          Length = 1418

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/431 (33%), Positives = 213/431 (49%), Gaps = 71/431 (16%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA++  L+  Y N HEG LS  R K + N  L KLG        +    F
Sbjct: 1027 LETLGDSFLKYAVSQQLFNMYQNHHEGLLSVKREKIICNAALSKLGCDFRLPGFIRNDPF 1086

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+  W+ PG                                        +K +   L+ 
Sbjct: 1087 DPK-TWIIPG----------------------------------------VKSESFKLEE 1105

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
            TV  N + +          +  K +AD VEALIGA+L   G   ALLFM W+G+KV   +
Sbjct: 1106 TV-FNGRKIYTRG---DRKLKRKVVADVVEALIGAFLSAGGEMAALLFMDWIGIKVNFNI 1161

Query: 964  TNPESKHLS--DVLLDGFDKFEESI-NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
               E + ++  D L++   +F ES+  Y F+D+S L++A+TH SY L  +  CYQRLE+L
Sbjct: 1162 IPYERQFIACPDNLVN--VRFLESLLKYSFRDRSLLVEALTHGSYMLPDVPRCYQRLEYL 1219

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LDYLIT HLY      SPG LTD+RSA VNN  +A  A+++  H    H S  LH+
Sbjct: 1220 GDSVLDYLITMHLYRVYPGMSPGQLTDMRSASVNNDCYAMSAIKVQLHKHVLHASQELHK 1279

Query: 1081 -VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             ++    K   ++  +   E            +   PK LGD+ ES+AGAI++DSG   +
Sbjct: 1280 HIVATLDKFDDQSSSSFGWE-----------SEATFPKVLGDIIESLAGAIFVDSGYDKE 1328

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV-RVTVEVFG 1198
             VWK    +++  +   ++++   PIREL EL  +   ++K + L+    V    +EV  
Sbjct: 1329 AVWKSIRPLLEPLVTPDTLTI--HPIRELNEL-CQKMNYTKEKTLSRNDGVTSCKIEVIA 1385

Query: 1199 KG-----SYKG 1204
             G      YKG
Sbjct: 1386 DGVIHQFEYKG 1396



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L Y IT+ LY  YP +  G+L+ +RS  V+N
Sbjct: 1214 QRLEYLGDSVLDYLITMHLYRVYPGMSPGQLTDMRSASVNN 1254



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 98/461 (21%), Positives = 171/461 (37%), Gaps = 85/461 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + + I ++  YC+RLPSD + +  P+       +   I++     LP + P+    V G 
Sbjct: 595 LSSGITLIYLYCSRLPSDGYFKPTPMW-----DKHKGILY-----LPKSCPIHAIHVQGD 644

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               K     IA +EAC+ L+++  L +          NL  +      +  E    P S
Sbjct: 645 NKFLK----NIACLEACKQLHKIGALTD----------NLVPSIVVEEAEVEEFGNEPYS 690

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIH-PPENS--- 175
            ++  +    + +  +N   ++   CYL  +K   +  I  +      ++   PE     
Sbjct: 691 EEQPSYVPFELVNHMSNNSSTIYY-CYLIELKQNFSYDITVQDIFLATRVELDPEIGCMQ 749

Query: 176 -----PQGLAILTTKYIPKVCSFP-IFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDY 229
                 +G   +  +Y   +   P     C   +VSI  I  N  + +E+ S      D 
Sbjct: 750 FDMCFDRGSLAVNLRYRGNINLSPDQVLLCKRFQVSILGILMNSKMDKESFSEKYSLEDD 809

Query: 230 LFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEK 289
           L                   E  Y ++P+++  E   +DW     IS  H   IQ    +
Sbjct: 810 L-------------------EIDYLLLPSIAIEETPSVDW---LTISSIHPSKIQC---R 844

Query: 290 ERENFVFDESKFRDAVVMPWYRNQFEPT----YFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
                +  E  F    ++   RN    T      Y+   M  +   S          T++
Sbjct: 845 YHAANILTEKGFACGCIL---RNALICTPHNGRTYITAGMMELDGNSPLEVGDGEVTTYK 901

Query: 346 EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTP-RYVNRKGINLATTSEETRREIRESLG 404
           +Y+  K+G+Q++   Q LL   H     N+         +G+N++ T  E          
Sbjct: 902 KYFGQKHGIQLRFEHQRLLKARHVFPVKNYCHGYSQAKDRGLNVSKTFVE---------- 951

Query: 405 KKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLA 443
               L PELC  ++ P P S       +PSI++RL +LL A
Sbjct: 952 ----LPPELCSIIMSPVPLSTLYTFSFIPSIMHRLESLLGA 988


>gi|379987680|gb|AFD22620.1| dicer-like 3 protein, partial [Nicotiana attenuata]
          Length = 596

 Score =  192 bits (487), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 154/463 (33%), Positives = 222/463 (47%), Gaps = 68/463 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA++  L+  YP  HEG+LS  RS  VSN  L K+G  +     + 
Sbjct: 9    SMERLELLGDSVLKYAVSCHLFLKYPKKHEGQLSDQRSWAVSNSTLHKVGTSRHLQGYIR 68

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  W  PG      L     + G   S      +P  K+   E    ++ + C 
Sbjct: 69   DGAFDPR-RWTAPGQL---SLRLCPCDHGVETS-----EVPLDKKFLTEDPKVVVGKHC- 118

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                  D        +  +   +I    I+DCVEALIGAY +  G   AL  M WLG++ 
Sbjct: 119  ------DRG------HRWMGSKTI----ISDCVEALIGAYYVGGGFIAALKLMKWLGVEA 162

Query: 960  -IPPVT-------------NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
             + P                P++K + D         E  ++Y+F  K  LL+A+THA+ 
Sbjct: 163  ELEPSLVEDAIKTAFLYSYTPKAKDIED--------LELKLSYKFSVKGLLLEAITHATV 214

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
                ++  YQRLEFLGD++LD LIT +LY+  +   PG LTDLRSA VNN  FA  AV+ 
Sbjct: 215  LEVDVSYNYQRLEFLGDSVLDILITWYLYQKHKDIDPGELTDLRSASVNNDNFAYAAVKR 274

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFES 1125
              H   +H S  L   I  FVK+ +++          ++G        + PK LGDL ES
Sbjct: 275  ELHVHLQHHSGYLESEISAFVKLVSDS--------CSLQGN-------KAPKVLGDLVES 319

Query: 1126 VAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLA 1185
            +AGAI +D+ ++LD VWK+   ++   +    + +P  P+REL+EL      F K   + 
Sbjct: 320  IAGAILVDTKLNLDEVWKIVKPLLSPIVTPDKLELP--PLRELIELCDSLGYFLKDHCMV 377

Query: 1186 DGRRVRVTVEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
             G  V   + +  K      +G G+    AK  AA   LK L+
Sbjct: 378  KGDTVHAELRLQLKDELLVAEGCGQTRKNAKGQAALKLLKDLE 420


>gi|340372191|ref|XP_003384628.1| PREDICTED: endoribonuclease Dicer-like [Amphimedon queenslandica]
          Length = 1530

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 133/429 (31%), Positives = 214/429 (49%), Gaps = 53/429 (12%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA- 840
            +RLE +GDSFLK   +++LY   PN HEGKLS  RS++V+N NLF LGK+K    ++++ 
Sbjct: 1123 ERLELLGDSFLKLVTSVYLYNLRPNSHEGKLSEARSRRVANINLFVLGKKKGITSAILSD 1182

Query: 841  ------TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEII 894
                    F+ R  W+PPGY                A+L     + +       + L   
Sbjct: 1183 DFVSGIDSFKERLTWVPPGY----------------AALEESHKVTDKSVADTVEALIGA 1226

Query: 895  KQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
                  L+  + +     +  N  +    P KS +    +L+ A           +F S 
Sbjct: 1227 HTVAGGLEGGITLMKWFGIKINDGSSTIAPPKSTSSNTRSLLLA-------ESDSIFSSH 1279

Query: 955  LGLKVIPPVT-NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
             G    P +  + ++    + +L      +  I Y FK++  L++AMTH+SY  N +T C
Sbjct: 1280 FGSPPAPKLAFSDKAISTRNRILPQVSSIQGKIEYSFKNELLLIEAMTHSSYHRNDITGC 1339

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDAILDYL+T H+Y+ + +  PG +T+LRSALV N  FA LA+ L  H    H
Sbjct: 1340 YQRLEFLGDAILDYLVTCHIYQSDSSAEPGEITELRSALVCNSRFAKLAISLNLHKSLCH 1399

Query: 1074 LSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEA-------------------EDI 1113
             SP L   ++++ + ++      + +E  + + +  +A                   +DI
Sbjct: 1400 GSPNLFNDMKKYAQSLRQREKEDMFEEMSINDNDSAQAIVESIKDGDFDDDDDDDDDDDI 1459

Query: 1114 EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPK--SPIRELLEL 1171
            E PK+L D FE++AGA+++DSGM+L TVW+ +   ++  +++         +PI EL +L
Sbjct: 1460 EPPKSLSDCFEALAGAVFIDSGMNLQTVWEAFSPFLEPLLKKFKKKNLPPLTPICELHKL 1519

Query: 1172 EPENARFSK 1180
             P++    K
Sbjct: 1520 IPKDLEVKK 1528



 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 119/495 (24%), Positives = 214/495 (43%), Gaps = 74/495 (14%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM------------------FTC 42
            + N++ +++RYC RLP D +T+L+P   + +I +                       + C
Sbjct: 590  LGNSLTLLHRYCGRLPQDEYTKLSPHFEVKKIPKAGGRTLSLSELSLEEEDEDPNHNYIC 649

Query: 43   SIRLPINSPLKRSVTGHK-MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE 101
            S+ LPIN PL+  +     + TK  + R AA+ A   L+++ E+D+    + K   +   
Sbjct: 650  SLFLPINCPLRSDIIKSPPLGTKQQSQRAAALYAMEKLHKMDEVDD----LFKAKASADS 705

Query: 102  NTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNC-RPSVNTPCYL-YAVKMKLTCPIP 159
            + E V  +    +T   S K+   Y K ++   T C   SVN   Y  YA  +K      
Sbjct: 706  DDEDVKEEKKGEKTGAGSDKKSSSYKKEVSPLLTGCFESSVNATGYFAYAFVIK------ 759

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIP--KVCSFPIFTR-CGEVEVSIELIDKNVV-- 214
              +  RG       +  QG+A+LT K +P   + ++ ++ +   E E+ + +  K V   
Sbjct: 760  --EETRGLLY----SKTQGVAMLTKKQLPYWMIPAYSLYVKDNSETEIKLTVTLKPVTQH 813

Query: 215  ---LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS------EQI 265
               L++E L+    F   +FT +L +    +  + + +   Y IVP   +S      + I
Sbjct: 814  IPSLTDEELNIYRSFHHNVFTDILFITPDNLEANFDKAIKDYIIVPVTINSLDGKTVDDI 873

Query: 266  VIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIM 325
             +D+     I  ++     +  EK + +  +  S     +V P YR+   P    +  + 
Sbjct: 874  KLDFAHAKSIVSYY-----EAGEKRKPSKPYTPSSLNSCLVTPAYRDSTIPGLQEIFWVE 928

Query: 326  TNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKG 385
             +     + P     +  F E++  KY  +I + +QP L      CR        VN   
Sbjct: 929  MDESKTPLSPFNYPKFANFVEFFKSKYDYEIIDKDQPAL-----ICR-------RVNTSF 976

Query: 386  INLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
            + L T+    R  + E   KK    + PEL  + P   S WR    LP++L+R+ +LL+A
Sbjct: 977  LKLFTS----RYLMSEPAVKKTDITMFPELVHVFPVSVSFWRVLRCLPAMLWRVESLLIA 1032

Query: 444  DEIRTAVASEIGLGK 458
             ++ T +  E G+G+
Sbjct: 1033 HKLSTRIRMETGIGR 1047


>gi|302794558|ref|XP_002979043.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
 gi|300153361|gb|EFJ20000.1| hypothetical protein SELMODRAFT_444049 [Selaginella moellendorffii]
          Length = 1686

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 130/376 (34%), Positives = 181/376 (48%), Gaps = 59/376 (15%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S + LE +GDSFLKY +T  L+  Y   HEG+LS  RS+   N  L++L K     
Sbjct: 1320 HEEFSYESLELLGDSFLKYVVTQKLFLVYDKKHEGQLSARRSRATCNAALYQLAKSSGIA 1379

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
            E +   +F P  NW  PG                                    +L    
Sbjct: 1380 EYIRDEEFNP-SNWTGPG------------------------------------MLTSDS 1402

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
             KC     + + N ++           I  K++AD VEALIGAYL   GP  A+  M  L
Sbjct: 1403 SKCRHQQGSFE-NEENYFSSCASGHRGIRRKALADVVEALIGAYLATSGPPSAMELMKQL 1461

Query: 956  GLKVIPPVTNPESKHLSDVLLDGF-------DKFEESINYRFKDKSYLLQAMTHASYFLN 1008
             + +   +    S   + +  + F       +  E  + Y+F+++S L++A+THAS   N
Sbjct: 1462 DIDIEFDIGLLASARQASLPAESFQHLQASLESLEHKLQYKFQNRSLLVEAITHASQ-PN 1520

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             L  CYQRLEFLGD +LD+L++RHL+E      PGTLTDLRSA VNN  FA L VR G H
Sbjct: 1521 CLL-CYQRLEFLGDGVLDFLVSRHLFETHPGLPPGTLTDLRSAAVNNKWFARLVVRHGLH 1579

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
               +H S  L   I++FV+   E            +  C   ED+  PK LGDL ES+ G
Sbjct: 1580 QHLQHGSVELDCEIRKFVQNVKEKP----------DASC--FEDLSAPKVLGDLLESITG 1627

Query: 1129 AIYLDSGMSLDTVWKV 1144
            AI++D+   L+ +W+V
Sbjct: 1628 AIFVDTNFDLERLWRV 1643



 Score = 65.5 bits (158), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 194/498 (38%), Gaps = 113/498 (22%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +++  ++ YCARL  D +    P  +  +        F C++  P N+PL RSV G    
Sbjct: 887  DSVSFIHEYCARL-GDRYYNAKPKFSFKD-------SFVCTVEFPPNAPL-RSVEGPLRR 937

Query: 63   TKLLAWRIAAMEACRVLYELKELDND-LMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            T+ LA + A ++ACR LY++ E+  D L P   +F    E  +P+           +S K
Sbjct: 938  TEQLAKKAACLQACRKLYDMGEVRRDTLCPDVDDF---DEEDQPMRKN--------ESGK 986

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLY---AVKMKL--TCPIPDEQNKRGRKIHPPENSP 176
            R++         F+  +P +    +++    V+++    C +          + PPE+  
Sbjct: 987  RKEI--------FSTAKPLIFEGSWVFNESGVQLQFYKICFV----------VEPPESRT 1028

Query: 177  QGLAILTTKYIPKVCSFPIFTRC---GEVEVS-IELIDKNVVLSEENLSNTLIFMDYLFT 232
                           +F     C    EV  S + L  +N V++        I +D    
Sbjct: 1029 YS-------------NFGFLVNCVIDAEVTDSEVTLFSRNRVVNARVHRVGPIQLDANQV 1075

Query: 233  KVLKLKKYLML---FD--PNCS----------ENSYFIVPTVSDSEQI------VIDWKF 271
            K  K  + L+L   F+    CS            ++ ++P   D++ I         W +
Sbjct: 1076 KAAKAYQELLLNGAFNRLARCSGSPQEILWDKSQAFLVLPVHDDNDSIDWTSVHATAWVY 1135

Query: 272  MTLISEHHNDVIQD---IPEKERENFV------FDESKFRDAVVMPWYRNQFEPTYFYVA 322
             TL S        D   + EK   + +         S  +D VV   +  +     F V 
Sbjct: 1136 RTLCSNFSPSSPMDGDGVGEKTHADMLCTANGYVHSSALQDMVVATVHNGRL----FCVT 1191

Query: 323  EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVN 382
             ++ N    S+ P R  TY    +YY  KY   ++  EQPLL    T    N L  R   
Sbjct: 1192 GVLENFTAASLLPKRGFTYI---DYYKDKYQRTLRLPEQPLLKAKPTHAFHNLLI-RPKE 1247

Query: 383  RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLL 442
            ++G    +  EE+  E          L PELCL     + L R    +PS L+R  + + 
Sbjct: 1248 QEG----SRQEESFVE----------LPPELCLCLEIKSGLIRSLYFVPSFLHRFTSTVC 1293

Query: 443  ADEIRTAVASEIGLGKVI 460
            A ++R+ +   I   K++
Sbjct: 1294 AIQLRSPLWPWIPAAKIL 1311


>gi|356532427|ref|XP_003534774.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 1421

 Score =  191 bits (486), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 146/395 (36%), Positives = 194/395 (49%), Gaps = 69/395 (17%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+ TY N HEG LS  R K +SN  L KLG        +    F
Sbjct: 1027 LETLGDSFLKYAASQQLFKTYKNHHEGLLSVKREKIISNAALCKLGCSSGLPGFIRNEPF 1086

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P   W  PG                P SL        L+EL       +IK K + +  
Sbjct: 1087 DPH-AWTIPG--------------DKPESL-------KLEEL-------VIKGKKIYVHG 1117

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
               +N                 K IAD VEALIGA+L   G   ALLFM W+G+KV    
Sbjct: 1118 KRKLN----------------RKIIADVVEALIGAFLSTGGEISALLFMDWVGIKVSFDK 1161

Query: 964  TNPESKHLS---DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
              P  +H     + LL+     E  + Y F D S L++A+TH SY L  +  CYQRLEFL
Sbjct: 1162 I-PYERHFDIQPEKLLN-VRFLESQLKYSFHDHSLLVEALTHGSYMLPEVPRCYQRLEFL 1219

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LDYLIT HLY +    SPG LTD+R+A VNN  +A  A++ G H    H S  LH+
Sbjct: 1220 GDSVLDYLITWHLYNEYPGMSPGQLTDMRAASVNNDCYAWSAIKHGLHKHVLHASQELHK 1279

Query: 1081 ----VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                 +  F K+ + + F    E                PK LGD+ ES+AGAI +DSG 
Sbjct: 1280 HIAVTLNNFDKLSSSSTFGYESE-------------ASPPKVLGDIIESLAGAILVDSGF 1326

Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            + + VW+    +++  +   ++ +   PIREL EL
Sbjct: 1327 NKEVVWQSIRPLLEPLVTPETLKL--HPIRELNEL 1359



 Score = 62.4 bits (150), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 101/461 (21%), Positives = 189/461 (40%), Gaps = 75/461 (16%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + ++I ++  YC+RLP+D + + AP       + D     T ++ LP + PL+   V G+
Sbjct: 593 LSSSISLIYLYCSRLPADGYFKPAP-------RWDKE---TGTLYLPKSCPLQPICVEGN 642

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP-------VTKEFINL-YENTEPVVPKTP 111
           K   K     IA +EAC+ L+++  L ++L+P         +EF N  Y+  +P      
Sbjct: 643 KKHLK----NIACLEACKQLHKIGALTDNLVPDIVIEEAEVEEFGNEPYDENQPTFVPFG 698

Query: 112 EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHP 171
            + +  +++     YH  +     N    ++      A++++L   I   Q   G     
Sbjct: 699 LVNSVSNNS--HTIYHCYLMELSQNFSYDISVQDIFLAIRIELDPEIGCTQFDMGFD--- 753

Query: 172 PENSPQGLAILTTKYIPKVCSFP-IFTRCGEVEVSI--ELIDKNVVLSEENLSNTLIFMD 228
                +G   L  +Y   +   P +   C + +V++   +ID +              M+
Sbjct: 754 -----RGSVSLKLRYKGTINLSPNLVLLCKKFQVTLLGSIIDHS--------------MN 794

Query: 229 YLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
            L T + K   YL     +  E  Y ++P +   E+  ++W  +  +           P 
Sbjct: 795 KLATSLDKC--YL----EDNVEIDYLLLPAIGKGEKSHVNWLAIKSVEPSSFTCKYHQPH 848

Query: 289 KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
            E ++ +    K +DA+V   +       YFY+   +  +H  S    R     T+++YY
Sbjct: 849 IETKSGLVCTCKLQDALVCTSHPGG--KIYFYITTGIMELHGNSPMELRGGEVTTYKKYY 906

Query: 349 SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
              +G+Q+Q   Q LL   H     +F    Y +  G       E ++  +         
Sbjct: 907 EQHHGIQLQFENQWLLKARH-----HFKVKNYCH--GQKQGKDGEASKAFVE-------- 951

Query: 409 LVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIR 447
           L PELC  ++ P   S+      +PSI++RL +LL A  ++
Sbjct: 952 LPPELCSIVMSPIKDSIIYTFSFIPSIMHRLESLLGAFNLK 992



 Score = 41.2 bits (95), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L Y IT  LY  YP +  G+L+ +R+  V+N
Sbjct: 1214 QRLEFLGDSVLDYLITWHLYNEYPGMSPGQLTDMRAASVNN 1254


>gi|260813388|ref|XP_002601400.1| hypothetical protein BRAFLDRAFT_103419 [Branchiostoma floridae]
 gi|229286695|gb|EEN57412.1| hypothetical protein BRAFLDRAFT_103419 [Branchiostoma floridae]
          Length = 430

 Score =  188 bits (478), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 92/161 (57%), Positives = 115/161 (71%), Gaps = 2/161 (1%)

Query: 312 NQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSC 371
           N  +P  FYVAEI   ++PRS FPS    Y TF+EYY  +YG  I NL+QPLLDVDHTS 
Sbjct: 1   NADQPQRFYVAEICYTLNPRSEFPSAD--YATFDEYYLKRYGEAITNLDQPLLDVDHTSS 58

Query: 372 RLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLP 431
           RLN LTPR++N+KG  L T+S ETR+  RE+L  KQ+LVPELC IHP PASLWRK+V LP
Sbjct: 59  RLNLLTPRHLNQKGKALPTSSAETRKAKRENLQSKQILVPELCEIHPVPASLWRKAVCLP 118

Query: 432 SILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
           S+LYR+  LL+A+E+R  +A E G+G+ +L E    P   F
Sbjct: 119 SVLYRVTTLLIAEELRVQIAQEAGIGQAVLPEGYAHPRLEF 159


>gi|195996181|ref|XP_002107959.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
 gi|190588735|gb|EDV28757.1| hypothetical protein TRIADDRAFT_51985 [Trichoplax adhaerens]
          Length = 685

 Score =  188 bits (477), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 143/453 (31%), Positives = 218/453 (48%), Gaps = 52/453 (11%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GDS+LKYA++I  + +Y   HEG+LS L+SK VSN NL+++G +      +I    
Sbjct: 264  LEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQIGIKMGLPGYIIGHNV 323

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +  D W+PPG+ + K  ++  +E          LS  NL   S     + +K KC     
Sbjct: 324  DQNDIWVPPGFSIAKKSDSIGLEEQ--------LSTLNLSMTSRVHPTQKLKNKC----- 370

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW-LGLKV--- 959
                                    IAD +EAL+G  L+E G   A  F++  LG+KV   
Sbjct: 371  ------------------------IADVMEALLGGILLELGENSANNFITNNLGIKVGRL 406

Query: 960  ---IPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--- 1012
               I  + +   K +S +         E  + Y FKD+  L+ A+THA+Y  N + +   
Sbjct: 407  SHNIAKLDDDARKEISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVE 466

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGDAIL Y++ RH Y     + P  L D   A + N   A + +  G H +F 
Sbjct: 467  CYQRLEFLGDAILQYIVVRHCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFF 526

Query: 1073 HLSPGLHEVIQRFVKMQAEN---DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            + SP L   I + +++   N   +  L+ E   +       + + +PK LGDLFES+ GA
Sbjct: 527  YNSPSLFSQINQLLQIVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGA 586

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR 1189
            I++D G S++ V  +   +++ +    +  VPKSPIR L E  P    F K EK  D   
Sbjct: 587  IFIDCGRSIEVVNDLVLRLLQPQHAIFAQGVPKSPIRILHEKFPSGLLF-KKEKTEDNSL 645

Query: 1190 VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALK 1222
             +++++V     +   G NY   K      AL+
Sbjct: 646  RKLSLQVPDGSYFTATGINYKHCKKVLCMMALR 678



 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 58/216 (26%), Positives = 104/216 (48%), Gaps = 27/216 (12%)

Query: 244 FDPNCSENSYFIVPTVSDSEQIV------IDWKFMTLISEHHNDVIQ-DIPEKERENFVF 296
           F+ + S + Y +VP  S++  I       ID+ F++ I+ ++   I  D+   +  N   
Sbjct: 15  FEASNSYSGYLVVPIRSETSPIEDRWEGDIDYDFLSRIASYNKTFIPIDLGNLDILN--- 71

Query: 297 DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
                 DA++   Y N   P+Y+ VA+I  +  P       +N    F  YY  KYG+ I
Sbjct: 72  ------DAIITRNYGNN--PSYYEVAQICRHRTPVDNLWGESNL--NFITYYQEKYGIMI 121

Query: 357 QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL-----GKKQL--L 409
           +N  QPLL   + S + N L      +   ++ + ++   + + +++     GK ++  L
Sbjct: 122 KNTTQPLLRPKYLSKKRNMLRSNSGQKSQFSVKSCNKSQTQSVADTITHHSKGKSKVIEL 181

Query: 410 VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
           +PELC    FPAS+W+    + SIL+R+ ++L   E
Sbjct: 182 IPELCKRSIFPASVWKSLACIRSILWRMESMLSVKE 217


>gi|168027292|ref|XP_001766164.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
 gi|162682596|gb|EDQ69013.1| dsRNA-specific nuclease dicer and related ribonuclease
            [Physcomitrella patens subsp. patens]
          Length = 1460

 Score =  187 bits (476), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 137/401 (34%), Positives = 195/401 (48%), Gaps = 39/401 (9%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE  GDSFLKYA++  L+      +EG LS  R + + N  L KL   +     +   +F
Sbjct: 1033 LELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEALHKLAVDRGLSAYIRDCQF 1092

Query: 844  EPRDNWLPPGYFVPKYLETALIEAG----FPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            +P   W  PG    K +     E      F ++      +   + L  +   E IK + +
Sbjct: 1093 DP-SRWAAPGMLAAKRVNCHCKEDNLLKPFKSTTSKVTGVFGNELLKDKIQTETIKPR-I 1150

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP--RGALLFMSWLGL 957
             L C                   +  K+I+D  EALIGAYL E G    GAL FM+W G+
Sbjct: 1151 GLTCDKG-------------HRYLCSKTISDVTEALIGAYL-EYGRNCEGALKFMTWAGI 1196

Query: 958  ------KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                  K++   +      LS    +    FE+ I Y FK+K   L+A+TH S  +    
Sbjct: 1197 DVHFDSKLMEAASKASPVDLSYDYGEDLKAFEKRIGYTFKNKYLPLEALTHFSNMVGDQI 1256

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+LD+L+TRHL+      +PG LT LR+A VNN  FA +AV+   H + 
Sbjct: 1257 RCYQRLEFLGDAVLDFLLTRHLFTSHPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYL 1316

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L   I+ FVK  +A +D   N  + L          +E PK LGDL ES+AGAI
Sbjct: 1317 RHGSGRLLHQIEEFVKSFEAADDDQKNSSFGL--------NGLEAPKVLGDLVESIAGAI 1368

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
             +D+   LD VW V   +++  +   ++ +   P+ EL EL
Sbjct: 1369 LVDTCFDLDKVWAVMMPLLEPIVTPATLDI--HPVTELEEL 1407



 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 110/503 (21%), Positives = 206/503 (40%), Gaps = 96/503 (19%)

Query: 2    DNAIFIVNRYCARLPSD-IFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +I +VNR+C++LP D  +T  A  ++     +   +++ C I+LP  SP+   V G  
Sbjct: 545  ETSIELVNRFCSKLPRDESYTPKAEYLS-----QKVGLLYKCDIKLPFGSPI-YEVLGEP 598

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
              T  LA +  A+EAC  L++   LD++L+P       L  + E ++   P+  +   +T
Sbjct: 599  QRTSRLAKQATALEACTQLHKAGALDDNLLPSLD--FELAADVEKIM--QPKNSSGFGTT 654

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC-PIPDEQNK--------------- 164
             +++ +    A  FT    + ++   L+A  M     P+ DE +                
Sbjct: 655  AQKELHSVAEAEAFTGHWHTSSSGAVLFAYYMSFDIHPVEDEMHANFVLLIGAALDDDVS 714

Query: 165  ---------RGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL 215
                     RGRK    + SP G   LT   +     F      G     I+ + +N   
Sbjct: 715  KLEIELCLTRGRKA-KAKLSPLGRTTLTADQLSNAKLFQTILFNGMFSKMIQPVQENRKR 773

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV-----IDWK 270
              E+  ++ +      T+ + L K         S N+Y ++P V +    V     IDWK
Sbjct: 774  KRESAISSFL------TERMGLWK---------SNNAYLLLPAVLEGSNDVGTLAPIDWK 818

Query: 271  FMTLISEHHNDVIQDIPEKERE----------------------NFVFDESKFRDAVVMP 308
             +   S     V++++  K  E                      N     S+  D  V+ 
Sbjct: 819  IIQATS----SVVKNLRFKFLEILTRPFSFVRRKPPVNCLTFAGNHQVATSELVDVAVLT 874

Query: 309  WYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT-YQTFEEYYSLKYGLQIQNLEQPLLDVD 367
             +     P    V  ++ +    S FP   N  ++T+ E++ +K+G  +++  QPLL + 
Sbjct: 875  GHTGIIYP----VLRVLHDTTAHSQFPGEKNREFKTYAEFFKIKHGRMLEHPNQPLLQLK 930

Query: 368  HTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKS 427
                  N L       +G  L + +      +         + PELC++  F A++ R +
Sbjct: 931  QNHRPHNLLPADAGKIEGTPLVSKATMQSTSVE--------MPPELCVVLKFSAAIVRSA 982

Query: 428  VSLPSILYRLNALLLADEIRTAV 450
              LPS+++R+ +++LA ++R ++
Sbjct: 983  YWLPSVMHRIKSVVLASQLRRSI 1005


>gi|339264092|ref|XP_003366828.1| endoribonuclease Dicer [Trichinella spiralis]
 gi|316961980|gb|EFV48479.1| endoribonuclease Dicer [Trichinella spiralis]
          Length = 325

 Score =  187 bits (474), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 117/269 (43%), Positives = 155/269 (57%), Gaps = 36/269 (13%)

Query: 963  VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY--FLNTLTDCYQRLEFL 1020
            +  PE+K  S       + FE  I YRF +K+YL+QA+TH+ Y      +TD Y+RLEFL
Sbjct: 47   LIGPEAKIHSIWTAYDLNSFEAKIGYRFTNKAYLIQALTHSLYNEVETPVTDSYERLEFL 106

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDAILDYLI+RHLY  +R  SPG L+DLR+ALVNN              +F + +  L  
Sbjct: 107  GDAILDYLISRHLYSSKRIRSPGLLSDLRAALVNN--------------YFLYFNAELLS 152

Query: 1081 VIQRFV-KMQA-ENDFTLNQEYYLMEGE--------CDEAEDIEVPKALGDLFESVAGAI 1130
            V +RFV  M+  +     + E Y+ME E         + AE +EVPK LGD+FESVAGAI
Sbjct: 153  VNERFVLAMRGLKESVNFHNELYMMEEEQDDDEKETSEFAEHVEVPKPLGDIFESVAGAI 212

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSV----------PKSPIRELLELEPENARFSK 1180
            +LDS  SL TVW+VYY ++  EI +               P SP+R LLELEPE  +F+ 
Sbjct: 213  FLDSHCSLATVWQVYYNMIAEEIGKQRSDFTSFNKCLCHPPISPVRHLLELEPERVQFNI 272

Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
             ++      V V V V GKGS+ G G++Y
Sbjct: 273  LDREEGNSGVHVQVVVTGKGSFIGSGKSY 301


>gi|157285011|gb|ABV31245.1| dicer-like 3 [Physcomitrella patens]
          Length = 1641

 Score =  186 bits (471), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 136/401 (33%), Positives = 194/401 (48%), Gaps = 39/401 (9%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE  GDSFLKYA++  L+      +EG LS  R + + N  L KL   +     +   +F
Sbjct: 1159 LELFGDSFLKYAVSRKLFLESSTANEGVLSTRRIRSICNEALHKLAVDRGLSAYIRDCQF 1218

Query: 844  EPRDNWLPPGYFVPKYLETALIEAG----FPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            +P   W  PG    K +     E      F ++      +   + L  +   E IK + +
Sbjct: 1219 DP-SRWAAPGMLAAKRVNCHCKEDNLLKPFKSTTSKVTGVFGNELLKDKIQTETIKPR-I 1276

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP--RGALLFMSWLGL 957
             L C                   +  K+I+D  EALIGAYL E G    GAL FM+W G+
Sbjct: 1277 GLTCDKG-------------HRYLCSKTISDVTEALIGAYL-EYGRNCEGALKFMTWAGI 1322

Query: 958  ------KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                  K++   +      LS    +    FE+ I Y FK+    L+A+TH S  +    
Sbjct: 1323 DVHFDSKLMEAASKASPVDLSYDYGEDLKAFEKRIGYTFKNIYLPLEALTHFSNMVGDQI 1382

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+LD+L+TRHL+      +PG LT LR+A VNN  FA +AV+   H + 
Sbjct: 1383 RCYQRLEFLGDAVLDFLLTRHLFTSHPTSTPGLLTSLRTASVNNERFARVAVKHRLHCYL 1442

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            +H S  L   I+ FVK  +A +D   N  + L          +E PK LGDL ES+AGAI
Sbjct: 1443 RHGSGRLLHQIEEFVKSFEAADDDQKNSSFGL--------NGLEAPKVLGDLVESIAGAI 1494

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
             +D+   LD VW V   +++  +   ++ +   P+ EL EL
Sbjct: 1495 LVDTCFDLDKVWAVMMPLLEPIVTPATLDI--HPVTELEEL 1533



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 114/551 (20%), Positives = 216/551 (39%), Gaps = 134/551 (24%)

Query: 2    DNAIFIVNRYCARLPSD-IFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            + +I +VNR+C++LP D  +T  A  ++     +   +++ C I+LP  SP+   V G  
Sbjct: 613  ETSIELVNRFCSKLPRDESYTPKAEYLS-----QKVGLLYKCDIKLPFGSPI-YEVLGEP 666

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
              T  LA +  A+EAC  L++   LD++L+P       L  + E ++   P+  +   +T
Sbjct: 667  QRTSRLAKQATALEACTQLHKAGALDDNLLPSLD--FELAADVEKIM--QPKNSSGFGTT 722

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC-PIPDEQNK--------------- 164
             +++ +    A  FT    + ++   L+A  M     P+ DE +                
Sbjct: 723  AQKELHSVAEAEAFTGHWHTSSSGAVLFAYYMSFDIHPVEDEMHANFVLLIGAALDDDVS 782

Query: 165  ---------RGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL 215
                     RGRK    + SP G   LT   +     F      G     I+ + +N   
Sbjct: 783  KLEIELCLTRGRKA-KAKLSPLGRTTLTADQLSNAKLFQTILFNGMFSKMIQPVQENRKR 841

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV-----IDWK 270
              E+  ++ +      T+ + L K         S N+Y ++P V +    V     IDWK
Sbjct: 842  KRESAISSFL------TERMGLWK---------SNNAYLLLPAVLEGSNDVGTLAPIDWK 886

Query: 271  FMTLISEHHNDVIQDIPE-------KERENFVFDE------------------------- 298
             +   S    +++  +PE       + R+ F F E                         
Sbjct: 887  IIQATSSVVKNLV--LPEDPDFKHSQPRKRFKFLEILTRPFSFVRRKPPVNCLTFAGNHQ 944

Query: 299  ---SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT-YQTFEEYYSLKYGL 354
               S+  D  V+  +     P    V  ++ +    S FP   N  ++T+ E++ +K+G 
Sbjct: 945  VATSELVDVAVLTGHTGIIYP----VLRVLHDTTAHSQFPGEKNREFKTYAEFFKIKHGR 1000

Query: 355  QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKG----------------------------- 385
             +++  QPLL +       N L       +G                             
Sbjct: 1001 MLEHPNQPLLQLKQNHRPHNLLPADAGKIEGPTGARKMKKIQKTEATLVEARSVEEDFEV 1060

Query: 386  INLATTSEETRREIRESLGKKQL------LVPELCLIHPFPASLWRKSVSLPSILYRLNA 439
             N+   +  +  E+ + + K  +      + PELC++  F A++ R +  LPS+++R+ +
Sbjct: 1061 YNMKDQANSSLSEVEKVVSKATMQSTSVEMPPELCVVLKFSAAIVRSAYWLPSVMHRIKS 1120

Query: 440  LLLADEIRTAV 450
            ++LA ++R ++
Sbjct: 1121 VVLASQLRRSI 1131


>gi|195997771|ref|XP_002108754.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
 gi|190589530|gb|EDV29552.1| hypothetical protein TRIADDRAFT_18215 [Trichoplax adhaerens]
          Length = 1018

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 130/418 (31%), Positives = 203/418 (48%), Gaps = 60/418 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDSFLK+ I   L+ ++P  HEG+L++  +K V N NL KLGK     E +I
Sbjct: 641  SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYII 700

Query: 840  ATKFEPRDN--WLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
               F    N  W+PPGY                            K LS        K K
Sbjct: 701  GKPFNLLKNEGWIPPGY----------------------------KLLSS-------KVK 725

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL-- 955
             +D   T D++    V     T      KSIAD ++A++ A L+E   R A  F+SWL  
Sbjct: 726  NLDEKVTSDLDGDKAV-----THQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDK 780

Query: 956  ---------GLKVIPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
                        ++P   N  S  ++ +   +  ++ E+ I Y F++K ++++A+TH+SY
Sbjct: 781  DIKFTINASAASLLPDDDNISSNEINKIYETNNLERLEKVIGYSFQNKLFMIRALTHSSY 840

Query: 1006 FLNTLT-DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
              + +  +  Q+LEFLGD IL Y+I RH +       P  L D + A+VNN   A + + 
Sbjct: 841  HHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDAKPAKLHDFQEAIVNNKCLAVIGIA 900

Query: 1065 LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY-YLMEGEC---DEAEDIEVPKALG 1120
            +G   +    SP L   I +F K+    D+ ++ E  Y    E    +  E++++PK + 
Sbjct: 901  IGVSKYVFQESPDLFRDIDQFAKI-ITCDYMIDDEMNYNDRTEALFENFTEEVKIPKPVS 959

Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
            D+ E++ GAIY+D+G S+  V K    +++  I  +   +P SPIR+L E  PE   F
Sbjct: 960  DVVEALIGAIYIDTGESIAEVTKALMPLLQPRISLVLRDIPISPIRQLYEKVPEGVSF 1017



 Score = 45.1 bits (105), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 33/119 (27%), Positives = 52/119 (43%), Gaps = 26/119 (21%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFIN 98
           M   +I+LP +SPL  S+TG    T+  A    A+  C+ L+E+ +LD++L+PV      
Sbjct: 432 MSNTTIQLPSSSPLPDSITGPLAITEKRAKASTALLVCQELHEIGQLDDNLVPVK----- 486

Query: 99  LYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCP 157
            Y  +E                     + K + +   +C P      YLYA+ MK   P
Sbjct: 487 -YLQSES--------------------FSKNIPAVLNDCHPKEKQDLYLYALVMKALPP 524



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 7/69 (10%)

Query: 391 TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
           T  ET  +I E       L+PELC  +   AS+W+    +PS L+R+  LLLA E++  +
Sbjct: 554 TQSETSSKITE-------LIPELCKRYFLSASVWKVITCIPSFLWRMETLLLAHELKDVL 606

Query: 451 ASEIGLGKV 459
              I +  +
Sbjct: 607 FGSIPINGI 615


>gi|359476600|ref|XP_002269915.2| PREDICTED: endoribonuclease Dicer homolog 2-like [Vitis vinifera]
          Length = 1394

 Score =  185 bits (469), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 198/424 (46%), Gaps = 66/424 (15%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+ T+ N HEG LS  + + +SN +L KLG  +     +    F
Sbjct: 997  LETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESF 1056

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+                           W      +   +  E++L   ++  V    
Sbjct: 1057 DPKK--------------------------WIIAGDQSRSHVFGEELLSSTRKIYVS--- 1087

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                            +  +  K IAD VEALIGA+L   G   AL+FM WLG+ V   V
Sbjct: 1088 ---------------ERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINV-DFV 1131

Query: 964  TNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
              P  +    +L    +    E  +NY F+D S L++A+TH SY L  +  CYQRLEFLG
Sbjct: 1132 KVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLG 1191

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE- 1080
            DA+LDYL+T HLY      SPG LTDLRSA VNN  +A  AV+   H    H S  LH  
Sbjct: 1192 DAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRH 1251

Query: 1081 ---VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
                +  F K+  E+ F    E                PK LGD+ ES+AGAI +DS  +
Sbjct: 1252 IVVTVGNFDKLPVESTFGWESES-------------SFPKVLGDVIESLAGAILVDSDYN 1298

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF 1197
             + V++    +++  I   +V +   P REL EL  +     K   ++   +  VT+EV 
Sbjct: 1299 KEVVFQSIRPLLEPLITPETVKL--HPARELGELCQKEHYDIKRVVVSQNGKASVTIEVE 1356

Query: 1198 GKGS 1201
              G+
Sbjct: 1357 ANGA 1360



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 103/468 (22%), Positives = 202/468 (43%), Gaps = 84/468 (17%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + ++I ++  YC+RLPSD + +  P  +I++       M TC+I  P + P++  SV G+
Sbjct: 558 LSSSIGLLYFYCSRLPSDGYFKPTPRCSINQD------MGTCTIYHPKSCPIQTVSVRGN 611

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               K    +IA +EAC+ L++   L ++L+P   E        E +V +    E  P  
Sbjct: 612 IKTLK----QIACLEACKELHKAGALTDNLVPQIVE-------EEAIVAQD---ENMPYD 657

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTP-----CYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
            ++  +Y   + +      PS+  P     CYL  +  K                +  E 
Sbjct: 658 DEQATYYPPELIN------PSLKDPVTPYHCYLIELDQK----------------YEYEV 695

Query: 175 SPQGLAILT---TKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
           SPQG+ +      +Y     +F +    G + VS+  +   + L+ E +     F   L 
Sbjct: 696 SPQGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGV-IHLTAEQVLMCRKFQITLL 754

Query: 232 TKVLKLKKYLMLFD----PNCSENSYFIVPTVSDSEQI--VIDWKFMTLISEHHNDVIQD 285
             ++       +FD     N     Y ++P+ ++S +I  ++DWK +  +   H +    
Sbjct: 755 RVLIDRAIDKGVFDRYDLGNDQMVDYLMLPS-TNSREIPSIVDWKCLGSVFFSHENASNH 813

Query: 286 I----PEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
           +    P    ++        ++++V   + +QF    + +  I+  ++  S    +    
Sbjct: 814 MGCFFPRMHTKSGFVCSCTLKNSIVYTPHTSQF----YCITGILGELNGNSFLSLKNGGL 869

Query: 342 QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            T++EYY L++G+++Q   + LL       R  F+   Y+ R         ++  +E+  
Sbjct: 870 LTYKEYYRLRHGIELQFDGEKLL-----KGRRMFVVQNYLQR-------CRQQKEKELSN 917

Query: 402 SLGKKQLLVPELCLI--HPFPASLWRKSVSLPSILYRLNALLLADEIR 447
           +  +   L PELC+I   P   S+      +PSI++R+ +LLLA  ++
Sbjct: 918 TTVE---LPPELCVIFMSPISISIIYSFSLIPSIMHRIESLLLAVNLK 962



 Score = 41.6 bits (96), Expect = 3.2,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GD+ L Y +T+ LY  YP +  G L+ LRS  V+N
Sbjct: 1185 QRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNN 1225


>gi|297735235|emb|CBI17597.3| unnamed protein product [Vitis vinifera]
          Length = 1340

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 141/424 (33%), Positives = 198/424 (46%), Gaps = 66/424 (15%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+ T+ N HEG LS  + + +SN +L KLG  +     +    F
Sbjct: 943  LETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESF 1002

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+                           W      +   +  E++L   ++  V    
Sbjct: 1003 DPKK--------------------------WIIAGDQSRSHVFGEELLSSTRKIYVS--- 1033

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                            +  +  K IAD VEALIGA+L   G   AL+FM WLG+ V   V
Sbjct: 1034 ---------------ERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINV-DFV 1077

Query: 964  TNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
              P  +    +L    +    E  +NY F+D S L++A+TH SY L  +  CYQRLEFLG
Sbjct: 1078 KVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLG 1137

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE- 1080
            DA+LDYL+T HLY      SPG LTDLRSA VNN  +A  AV+   H    H S  LH  
Sbjct: 1138 DAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRH 1197

Query: 1081 ---VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
                +  F K+  E+ F    E                PK LGD+ ES+AGAI +DS  +
Sbjct: 1198 IVVTVGNFDKLPVESTFGWESES-------------SFPKVLGDVIESLAGAILVDSDYN 1244

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF 1197
             + V++    +++  I   +V +   P REL EL  +     K   ++   +  VT+EV 
Sbjct: 1245 KEVVFQSIRPLLEPLITPETVKL--HPARELGELCQKEHYDIKRVVVSQNGKASVTIEVE 1302

Query: 1198 GKGS 1201
              G+
Sbjct: 1303 ANGA 1306



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 104/469 (22%), Positives = 201/469 (42%), Gaps = 86/469 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + ++I ++  YC+RLPSD + +  P  +I++       M TC+I  P + P++  SV G+
Sbjct: 504 LSSSIGLLYFYCSRLPSDGYFKPTPRCSINQD------MGTCTIYHPKSCPIQTVSVRGN 557

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               K    +IA +EAC+ L++   L ++L+P   E        E +V +    E  P  
Sbjct: 558 IKTLK----QIACLEACKELHKAGALTDNLVPQIVE-------EEAIVAQD---ENMPYD 603

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTP-----CYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
            ++  +Y   + +      PS+  P     CYL  +  K                +  E 
Sbjct: 604 DEQATYYPPELIN------PSLKDPVTPYHCYLIELDQK----------------YEYEV 641

Query: 175 SPQGLAILT---TKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
           SPQG+ +      +Y     +F +    G + VS+  +   + L+ E +     F   L 
Sbjct: 642 SPQGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGV-IHLTAEQVLMCRKFQITLL 700

Query: 232 TKVLKLKKYLMLFD----PNCSENSYFIVPTVSDSEQI--VIDWKFMTLISEHHNDVIQD 285
             ++       +FD     N     Y ++P+ ++S +I  ++DWK +  +   H +    
Sbjct: 701 RVLIDRAIDKGVFDRYDLGNDQMVDYLMLPS-TNSREIPSIVDWKCLGSVFFSHENASNH 759

Query: 286 I----PEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
           +    P    ++        ++++V   + +QF    + +  I+  ++  S    +    
Sbjct: 760 MGCFFPRMHTKSGFVCSCTLKNSIVYTPHTSQF----YCITGILGELNGNSFLSLKNGGL 815

Query: 342 QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            T++EYY L++G+++Q   + LL       R  F+   Y+ R            R++  +
Sbjct: 816 LTYKEYYRLRHGIELQFDGEKLL-----KGRRMFVVQNYLQR-----------CRQQKEK 859

Query: 402 SLGKKQL-LVPELCLI--HPFPASLWRKSVSLPSILYRLNALLLADEIR 447
            L    + L PELC+I   P   S+      +PSI++R+ +LLLA  ++
Sbjct: 860 ELSNTTVELPPELCVIFMSPISISIIYSFSLIPSIMHRIESLLLAVNLK 908



 Score = 41.2 bits (95), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GD+ L Y +T+ LY  YP +  G L+ LRS  V+N
Sbjct: 1131 QRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNN 1171


>gi|224109196|ref|XP_002315119.1| dicer-like protein [Populus trichocarpa]
 gi|222864159|gb|EEF01290.1| dicer-like protein [Populus trichocarpa]
          Length = 1408

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 153/457 (33%), Positives = 212/457 (46%), Gaps = 70/457 (15%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+  Y N HEG LS              + K+K+   + +  + 
Sbjct: 1003 LETLGDSFLKYAASQQLFKLYQNHHEGLLS--------------MKKEKIISNAALCRR- 1047

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
               D+ LP G+         +    F   LW                  I   KC   D 
Sbjct: 1048 -GCDHKLP-GF---------IRNESFDPKLWM-----------------IPGDKCGS-DL 1078

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
              +  +       +  +  +  K++AD VEALIGAYL   G   AL FM W+G+KV   +
Sbjct: 1079 LSEEPLSECRKIYVRGRRKVKSKTVADVVEALIGAYLSTGGEVLALFFMDWIGIKVDFMI 1138

Query: 964  TNPESKH--LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
              P  +H  L           E  +NY F+D S L++A+TH SY L  +  CYQRLEFLG
Sbjct: 1139 V-PYERHFQLQAEKFVNVRYLESLLNYSFRDPSLLVEALTHGSYMLPEIPSCYQRLEFLG 1197

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH-- 1079
            DA+LDYLIT HLY++    SPG LTDLRSA VNN  +A  AV+   H    H S  LH  
Sbjct: 1198 DAVLDYLITMHLYKEYPGMSPGLLTDLRSASVNNDCYAQSAVKGDLHKHILHTSQDLHKH 1257

Query: 1080 --EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
              E  + F K    + F    E                PK LGD+ ES+AGAI +DSG +
Sbjct: 1258 IVETAEIFQKSSLGSTFGWESE-------------TSFPKVLGDVIESLAGAILVDSGYN 1304

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEV 1196
             + V++    +++  I   +V +   P REL EL + ++  + K     +GR   +T+ V
Sbjct: 1305 KEIVFQSIRPLLEPLITPATVRL--HPARELSELCQKQHFDYKKSVVSYNGRNASITIVV 1362

Query: 1197 FGKG---SYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230
               G    +     +   AK  A+K  LK LK +  A
Sbjct: 1363 GANGVTFKHTATAADKKTAKKLASKEVLKSLKESNFA 1399



 Score = 68.2 bits (165), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 108/484 (22%), Positives = 208/484 (42%), Gaps = 110/484 (22%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + +++ ++  YC+RLPSD + + API  I + KE      TC++ LP +SP++   V G+
Sbjct: 557 LSSSVSLIYFYCSRLPSDGYFKPAPICIIDKEKE------TCTLHLPKSSPIQNICVQGN 610

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP-------VTKEFIN-LYENTEPV-VPKT 110
               K    + A +EAC+ L+ +  L ++L+P       V +E  N  Y++ +P+ +P  
Sbjct: 611 NKNLK----QKACLEACKQLHLIGALTDNLVPDVVEEEAVAQEIRNERYDDEQPIYLP-- 664

Query: 111 PEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP----------- 159
           PE+ +      + ++Y                  CYL  +  K    +P           
Sbjct: 665 PELASQGPRNLKTKYY------------------CYLIELNQKFDYGVPVHDIVLVMRTE 706

Query: 160 ---DEQNKRGRKIHPPENSPQGLAILTTKYIPKVC--SFPIFTRCGEVEVSI--ELIDKN 212
              D  +  G ++     + +GL  ++ +YI  +     P+   C   ++++   LI + 
Sbjct: 707 LESDVLSSMGFEL----EAERGLLAVSLRYIGDIYLDQVPVLL-CRRFQITLFEVLIHRE 761

Query: 213 VVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWK-F 271
           V   EE L            K L+L   +++         YF++P +    Q  IDW+  
Sbjct: 762 VNKLEEVL------------KGLELGTGVVM--------DYFLLPAIRSRSQPSIDWEPI 801

Query: 272 MTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPT-----YFYVAEIMT 326
            +++  + N+   +   K   + V  +      V     +N    T      +++     
Sbjct: 802 SSVLFSYKNEDHFNCSSKGNAHVVHTKG---GPVCTCVLQNSLVCTPHNGNVYFITGASE 858

Query: 327 NVHPRSMFPSRTNTYQTFEEYYSLKY-GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKG 385
           +++ RS+   R  +  T++E+++ +   +Q+   ++PLL+  H     NFL     NR  
Sbjct: 859 DLNGRSLLKLRNGSAITYKEHFAKRRNSIQLLFDQEPLLEGRHIFPVHNFL-----NRC- 912

Query: 386 INLATTSEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLA 443
                    T++E +ES      L PELC  ++ P   S       +PSI++RL +LL+A
Sbjct: 913 --------RTKKE-KESKNAHVDLPPELCDIILSPVSISTLYSYTFIPSIMHRLESLLIA 963

Query: 444 DEIR 447
             ++
Sbjct: 964 VNLK 967



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GD+ L Y IT+ LY  YP +  G L+ LRS  V+N
Sbjct: 1191 QRLEFLGDAVLDYLITMHLYKEYPGMSPGLLTDLRSASVNN 1231


>gi|156368540|ref|XP_001627751.1| predicted protein [Nematostella vectensis]
 gi|156214670|gb|EDO35651.1| predicted protein [Nematostella vectensis]
          Length = 199

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 99/189 (52%), Positives = 123/189 (65%), Gaps = 1/189 (0%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
            FE+ I Y F +K YL+QA+THASY  N LTDCYQRLEFLGDA+LD+L+T  +Y       
Sbjct: 4    FEKRIGYEFSNKLYLIQALTHASYSQNRLTDCYQRLEFLGDALLDFLVTELIYSRNTNLD 63

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            PG LTDLR ALVNN IFA +AV+ GF+     +SP     I  FV    E +    Q+ +
Sbjct: 64   PGELTDLRQALVNNNIFAEIAVKHGFNKSLFQMSPEWFNKIGVFVDHVKEREARGIQDPF 123

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
            L     DE E IE PK LGD+FESVAGAI+LDSGM L   W+VYY ++K  I+  S  VP
Sbjct: 124  LTLSNDDE-EGIEAPKVLGDIFESVAGAIFLDSGMDLVLTWRVYYRMLKPYIDAYSADVP 182

Query: 1162 KSPIRELLE 1170
            K+P+R + E
Sbjct: 183  KNPVRLIHE 191


>gi|297815500|ref|XP_002875633.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297321471|gb|EFH51892.1| hypothetical protein ARALYDRAFT_484824 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1521

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 139/427 (32%), Positives = 204/427 (47%), Gaps = 57/427 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY  + +L+  YP+  EG+LS  R   +SN NL +L   +     + 
Sbjct: 961  SMERLELLGDSVLKYVASCYLFLKYPDKDEGQLSRQRQSIISNSNLHRLATNRKLQGYIR 1020

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE--LSPEKVLEIIKQK 897
               FEPR  W  PG F           + FP     C    + +E  L P+   E     
Sbjct: 1021 NGAFEPR-RWTAPGQF-----------SLFPVP---CKCGIDTREVPLDPKFFTE---NM 1062

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
             + +  + DM  +  V            KS++DC EALIGAY +  G   +L  M WLG+
Sbjct: 1063 TIKIGKSCDMGHRWTV-----------SKSVSDCAEALIGAYYVSGGLTASLHMMKWLGV 1111

Query: 958  KV-IPPVTNPESKHLSDVLL-------DGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             V   P  N   + +S V L       D   + E  I + F  K  L +A+TH+S   + 
Sbjct: 1112 NVDFDP--NLVVEAISRVSLRCYIPKDDELTELERKIQHEFSAKFLLKEAITHSSVHESY 1169

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
                Y+RLEFLGD++LD+LITRHL+       PG +TDLRSA VNN  FA +AV+   H 
Sbjct: 1170 ---SYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHI 1226

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
              +  +  L   I  ++    + D T                 I+ PKALGD+ ES+AGA
Sbjct: 1227 HLQRCATVLENQINEYLMSFQKPDETGRS-----------IPSIQGPKALGDVVESIAGA 1275

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR 1189
            + +D+ + LD VW+V+  ++   +    + +P  P REL EL      F + +   DG +
Sbjct: 1276 LLIDTRLDLDQVWRVFEPLLSPLVTPDKLQLP--PYRELNELCDSLGYFFREKCSNDGVK 1333

Query: 1190 VRVTVEV 1196
             + T+ +
Sbjct: 1334 AQATIHL 1340



 Score = 43.9 bits (102), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 30/117 (25%), Positives = 58/117 (49%), Gaps = 4/117 (3%)

Query: 338 TNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
           ++ Y T+ EY++ KYG+ + +  QPL+ +  +    N L     N + +  A       R
Sbjct: 825 SSEYATYAEYFNKKYGIVLAHPNQPLMKLKQSHHAHNLLVD--FNEEMVVKAEPKAGNVR 882

Query: 398 EIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           + + ++     L PEL      P ++ +    LPS+++RL +L+LA ++R  +   I
Sbjct: 883 KKKPNIHAH--LPPELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSI 937


>gi|357131511|ref|XP_003567380.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Brachypodium
            distachyon]
          Length = 1183

 Score =  184 bits (468), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 148/456 (32%), Positives = 220/456 (48%), Gaps = 49/456 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-KQKVFGESM 838
            S +RLE +GDS LKYA++  L+  +P+ HEG+LS  R   +SN  L +LG K K+ G   
Sbjct: 605  SMERLELLGDSVLKYAVSCHLFLKFPDKHEGQLSSSRIDIISNAALHRLGIKHKIQGYIR 664

Query: 839  IATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
             A  F+PR  WL PG    +               ++C   P   E+  + +  I ++  
Sbjct: 665  DAA-FDPR-RWLAPGQRTNRP--------------FHC-KCPVDYEVVTKDIHVIDEKPT 707

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL- 957
            + +    D                +  K+I+DCVEA+IGAY +  G R A+  + WLG+ 
Sbjct: 708  IKIGQACDKG-----------HRWMCSKTISDCVEAIIGAYYVGGGLRAAVAVLRWLGVD 756

Query: 958  -----KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                 ++I       S       +D  +  E  + Y F  K  LL+A+TH S+  +    
Sbjct: 757  AEIEEELIMQTILSASMKTYVPKIDLVEALEAKLGYAFSVKGLLLEALTHPSHQESEERY 816

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
             Y+RLEFLGDA LD L+T HL+   +    G LTDLRSA VNN  FA +AV+   HHF +
Sbjct: 817  SYERLEFLGDAALDILLTWHLFSSHKDTDEGELTDLRSASVNNENFAKVAVKHKLHHFLQ 876

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
              S  L + I  +     EN         + E        +  PK LGD+ ES+AGAI +
Sbjct: 877  QSSGILLDQITEYAN-SLENS-------SMDEINLSSDAPLRGPKVLGDIVESIAGAILI 928

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRV 1192
            D+ + LD V  V+  ++   +   ++ +P  P RELLE   +N  F    K  DG +++ 
Sbjct: 929  DTKLDLDVVRGVFKPLLSPIVTPENLELP--PFRELLEWCNKNGYFLGI-KCTDGDKIQA 985

Query: 1193 TVEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
             ++V  +      +G G+N   AK  AA   LK L+
Sbjct: 986  ILDVQLEDVLVIRRGFGKNKKDAKAHAASMLLKDLE 1021



 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 100/496 (20%), Positives = 207/496 (41%), Gaps = 52/496 (10%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           +D++I I++ YC +LP D +    P    +    DD   F C++ LP +S +   + G K
Sbjct: 121 VDSSISIISEYCDKLPKDKYHTTRPSFEFTH--HDDG--FVCTLTLP-SSDVLPPLEGPK 175

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
             +K  A ++  ++AC+ L  L   D+ L P      +L E    +V K   + +     
Sbjct: 176 ARSKQKAKQLVCLDACKQLDLLGVHDDCLCP------SLKEPPVEIVNKASVLTSNAGVQ 229

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
           KR++ +    A  F+    S  T   L   K+  +C    ++      +     + +   
Sbjct: 230 KRKELHGTTRACAFSGTWASKRTVIKLQGYKLNFSCDQVGQKYSEFVLLIDTTIANEAAN 289

Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK- 239
           +    Y+         + CG +E+ ++ ++      +  L   LIF + LF K+    K 
Sbjct: 290 LDINLYLHDKMVKASVSPCGLLELDVQQME------QVKLFQALIF-NGLFGKLFTGSKS 342

Query: 240 ------YLMLFDPNC---SENSYFIVP---TVSDSEQIVIDWKFM-------TLISEHHN 280
                 +++  D N    + N Y ++P   T+   +   I+W+ +        L+ + H+
Sbjct: 343 SNSSREFILNKDDNLIWNNANMYLLLPMDPTLESHDSFCINWRVIDEAATAVRLMRKIHS 402

Query: 281 D------VIQDIPEKERE-----NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVH 329
           D       I D  +   +     N   +    R+  V+  +  +   T  +V ++  N  
Sbjct: 403 DGKMNLLAILDFDQIYGDLIHLANTSCEVHTLRNVAVLAVHTGKIY-TALHVTDLSANST 461

Query: 330 PRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLA 389
              +   + + ++TF EY+  KY + +++  QPLL +  +    N L+ +  +       
Sbjct: 462 FDGVSSKKESGFKTFTEYFEKKYDIVLRHPSQPLLVLKPSHNPHNLLSSKIRDEGPCYGE 521

Query: 390 TTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
             ++ T   I+  +  +  + PEL +    P  + R     PS++YR+  L+LA ++R+ 
Sbjct: 522 NKNDGTTDVIK--VNNRVHMPPELLIPLNLPEDILRAFYLFPSLMYRMETLMLASQLRSE 579

Query: 450 VASEIGLGKVILDEKV 465
           +A +  +   ++ E +
Sbjct: 580 IAYDSNISSFLILEAI 595


>gi|147833654|emb|CAN77284.1| hypothetical protein VITISV_043738 [Vitis vinifera]
          Length = 1296

 Score =  184 bits (467), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 140/424 (33%), Positives = 198/424 (46%), Gaps = 66/424 (15%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA +  L+ T+ N HEG LS  + + +SN +L KLG  +     +    F
Sbjct: 899  LETLGDSFLKYAASQQLFKTFQNHHEGLLSVKKERIISNASLCKLGCDRKLPGFIRNESF 958

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+                           W      +   +  E++L   ++  V    
Sbjct: 959  DPKK--------------------------WIIAGDQSRSHVFGEELLSSTRKIYVS--- 989

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                            +  +  K IAD VEALIGA+L   G   AL+FM WLG+ V   V
Sbjct: 990  ---------------ERRKLKSKRIADVVEALIGAFLSTGGETAALIFMRWLGINV-DFV 1033

Query: 964  TNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
              P  +    +L    +    E  +NY F+D S L++++TH SY L  +  CYQRLEFLG
Sbjct: 1034 KVPYKRDFPVILKRHVNVSYLESILNYSFRDPSLLVESLTHGSYMLPEIPRCYQRLEFLG 1093

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE- 1080
            DA+LDYL+T HLY      SPG LTDLRSA VNN  +A  AV+   H    H S  LH  
Sbjct: 1094 DAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNNDCYAQSAVKAKLHQHILHSSQELHRH 1153

Query: 1081 ---VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
                +  F K+  E+ F    E                PK LGD+ ES+AGAI +DS  +
Sbjct: 1154 IVVTVGBFDKLPXESTFGWESES-------------SFPKVLGDVIESLAGAILVDSDYN 1200

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF 1197
             + V++    +++  I   +V +   P REL EL  +     K   ++   +  VT+EV 
Sbjct: 1201 KEVVFQSIRPLLEPLITPETVKL--HPARELXELCQKEHYXIKRVVVSQNGKASVTIEVE 1258

Query: 1198 GKGS 1201
              G+
Sbjct: 1259 ANGA 1262



 Score = 67.8 bits (164), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 104/468 (22%), Positives = 203/468 (43%), Gaps = 84/468 (17%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           + ++I ++  YC+RLPSD + +  P  +I++       M TC+I LP + P++  SV G+
Sbjct: 460 LSSSIGLLYFYCSRLPSDGYFKPTPRCSINQD------MGTCTIYLPKSCPIQTVSVRGN 513

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
               K    +IA +EAC+ L++   L ++L+P   E        E +V +    E  P  
Sbjct: 514 IKTLK----QIACLEACKELHKAGALTDNLVPQIVE-------EEAIVAQD---ENMPYD 559

Query: 120 TKRRQFYHKRMASCFTNCRPSVNTP-----CYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
            ++  +Y   + +      PS+  P     CYL  +  K                +  E 
Sbjct: 560 DEQATYYPPELIN------PSLKDPVTPYHCYLIELBQK----------------YEYEV 597

Query: 175 SPQGLAILT---TKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
           SPQG+ +      +Y     +F +    G + VS+  +   + L+ E +     F   L 
Sbjct: 598 SPQGIVLAVRSELEYDVGNVNFDLQVDRGTMTVSMNYVGV-IHLTAEQVLMCRKFQITLL 656

Query: 232 TKVLKLKKYLMLFD----PNCSENSYFIVPTVSDSEQI--VIDWKFMTLISEHHNDVIQD 285
             ++       +FD     N     Y ++P+ ++S +I  ++DWK +  +   H +    
Sbjct: 657 RVLIDRAIDKGVFDRYDLGNDQMVDYLMLPS-TNSREIPSIVDWKCLGSVFFSHENASNH 715

Query: 286 I----PEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTY 341
           +    P    ++        ++++V   + +QF    + +  I+  ++  S    +    
Sbjct: 716 MGCFFPRMHTKSGFVCSCTLKNSIVYTPHTSQF----YCITGILGELNGNSFLSLKNGGL 771

Query: 342 QTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            T++EYY L++G+++Q   + LL       R  F+   Y+ R         ++  +E+  
Sbjct: 772 LTYKEYYXLRHGIELQFDGEKLL-----KGRRMFVVQNYLQR-------CRQQKEKELSN 819

Query: 402 SLGKKQLLVPELCLIH--PFPASLWRKSVSLPSILYRLNALLLADEIR 447
           +  +   L PELC+I   P   S+      +PSI++R+ +LLLA  ++
Sbjct: 820 TTVE---LPPELCVIFMSPISISIIYSFSLIPSIMHRIESLLLAVNLK 864



 Score = 41.2 bits (95), Expect = 3.4,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GD+ L Y +T+ LY  YP +  G L+ LRS  V+N
Sbjct: 1087 QRLEFLGDAVLDYLMTMHLYHKYPGMSPGLLTDLRSASVNN 1127


>gi|334187796|ref|NP_001190348.1| dicer-like protein 4 [Arabidopsis thaliana]
 gi|332005448|gb|AED92831.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1688

 Score =  184 bits (466), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 199/402 (49%), Gaps = 50/402 (12%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S +RLE +GD+FLK+A++  L+  + ++ EG+L+  RS  V+N NL +L  +K   
Sbjct: 1099 HERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNL- 1157

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
                  +   RD  L P         T     G P  +  C  + + +  S  + L I++
Sbjct: 1158 ------QVYIRDQALDP---------TQFFAFGHPCRV-TCDEVASKEVHSLNRDLGILE 1201

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                ++ C+                H +  K+IAD VEAL+GA+L++ G +GA+ F+ W+
Sbjct: 1202 SNTGEIRCSKG-------------HHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWI 1248

Query: 956  GLKV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
            G+ V      +        ++L     +  +  E  ++Y+F  K  L+QA  H SY  + 
Sbjct: 1249 GVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHG 1308

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEFLGDA+LDYL+T + +       PG LTDLRS  VNN   A++AV      
Sbjct: 1309 -GGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKR 1367

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            F    S  LHEVI+ +    A +     Q           +E    PK LGDL ES  GA
Sbjct: 1368 FLFCESIYLHEVIEDYTNFLASSPLASGQ-----------SEGPRCPKVLGDLVESCLGA 1416

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            ++LD G +L+ VW +    +   ++ LS ++  SPI+EL+EL
Sbjct: 1417 LFLDCGFNLNHVWTMMLSFL-DPVKNLS-NLQISPIKELIEL 1456



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
              P    H G   +RLE +GD+ L Y +T + +  +P +  G+L+ LRS  V+N  L  +
Sbjct: 1300 IHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANV 1359

Query: 829  G-----KQKVFGESM 838
                  K+ +F ES+
Sbjct: 1360 AVSFSLKRFLFCESI 1374



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           ++I ++ +YC+RLP D F +  P      + E    +  C I LP N+P+   +    +P
Sbjct: 641 SSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI--CRITLPANAPISE-IESSLLP 697

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI 97
           +   A + A ++A   L+ L  L++ L+P +K+ I
Sbjct: 698 STEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEI 732


>gi|145358264|ref|NP_197532.3| dicer-like protein 4 [Arabidopsis thaliana]
 gi|322510021|sp|P84634.2|DCL4_ARATH RecName: Full=Dicer-like protein 4
 gi|73672051|gb|AAZ80387.1| dicer-like 4 [Arabidopsis thaliana]
 gi|332005447|gb|AED92830.1| dicer-like protein 4 [Arabidopsis thaliana]
          Length = 1702

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 130/402 (32%), Positives = 199/402 (49%), Gaps = 50/402 (12%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S +RLE +GD+FLK+A++  L+  + ++ EG+L+  RS  V+N NL +L  +K   
Sbjct: 1113 HERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNL- 1171

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
                  +   RD  L P         T     G P  +  C  + + +  S  + L I++
Sbjct: 1172 ------QVYIRDQALDP---------TQFFAFGHPCRV-TCDEVASKEVHSLNRDLGILE 1215

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                ++ C+                H +  K+IAD VEAL+GA+L++ G +GA+ F+ W+
Sbjct: 1216 SNTGEIRCSKG-------------HHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWI 1262

Query: 956  GLKV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
            G+ V      +        ++L     +  +  E  ++Y+F  K  L+QA  H SY  + 
Sbjct: 1263 GVNVDFESLQVQDACIASRRYLPLTTRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHG 1322

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEFLGDA+LDYL+T + +       PG LTDLRS  VNN   A++AV      
Sbjct: 1323 -GGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKR 1381

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            F    S  LHEVI+ +    A +     Q           +E    PK LGDL ES  GA
Sbjct: 1382 FLFCESIYLHEVIEDYTNFLASSPLASGQ-----------SEGPRCPKVLGDLVESCLGA 1430

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            ++LD G +L+ VW +    +   ++ LS ++  SPI+EL+EL
Sbjct: 1431 LFLDCGFNLNHVWTMMLSFL-DPVKNLS-NLQISPIKELIEL 1470



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
              P    H G   +RLE +GD+ L Y +T + +  +P +  G+L+ LRS  V+N  L  +
Sbjct: 1314 IHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANV 1373

Query: 829  G-----KQKVFGESM 838
                  K+ +F ES+
Sbjct: 1374 AVSFSLKRFLFCESI 1388



 Score = 42.0 bits (97), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           ++I ++ +YC+RLP D F +  P      + E    +  C I LP N+P+   +    +P
Sbjct: 655 SSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI--CRITLPANAPISE-IESSLLP 711

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI 97
           +   A + A ++A   L+ L  L++ L+P +K+ I
Sbjct: 712 STEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEI 746


>gi|255565079|ref|XP_002523532.1| Ribonuclease III, putative [Ricinus communis]
 gi|223537239|gb|EEF38871.1| Ribonuclease III, putative [Ricinus communis]
          Length = 1633

 Score =  184 bits (466), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 134/403 (33%), Positives = 199/403 (49%), Gaps = 60/403 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+   L+  +  + EG+L+  RS  V+N NL KL  ++     + 
Sbjct: 1032 SLERLEILGDAFLKFAVGRHLFLLHDTLDEGELTRKRSNAVNNSNLLKLASRRNLQVYIR 1091

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  +   G+  P  + T   E    +S     +  N K           ++  +
Sbjct: 1092 DQPFDPR-QFFALGHPCP-VICTKESEGSIHSS-----NRSNAKG----------QENTI 1134

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            ++ C+                H +  K+IAD VEAL+GA++++ G R A  F+ WLG++V
Sbjct: 1135 EVRCSRG-------------HHWLYKKTIADVVEALVGAFIVDSGFRAATAFLKWLGIRV 1181

Query: 960  IPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                 N E+  ++ V L                 E+S++++F ++  +LQA  H SY  +
Sbjct: 1182 -----NIEASDVTKVCLASRTFMPLAPSIDVSSLEDSLDHQFVNRGLVLQAFVHPSYNKH 1236

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CYQRLEFLGDA+LDYLIT +L+       PG LTDLRSALVNN  FA +AV   F+
Sbjct: 1237 G-GGCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGLLTDLRSALVNNRAFAIVAVDRSFN 1295

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
             F    S  L E I+ +V                   E D  E  + PK LGDL ES  G
Sbjct: 1296 EFLICDSGNLSEAIETYVNFVKRPAV-----------EKDSLEGPKCPKVLGDLVESCIG 1344

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AI+LD+G  L+ +WK+    +   +   S +V  +P REL E 
Sbjct: 1345 AIFLDTGFDLNCIWKLMLSFLDPILN--SSNVLLNPFRELHEF 1385



 Score = 54.3 bits (129), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 103/480 (21%), Positives = 197/480 (41%), Gaps = 75/480 (15%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I +++ YC++LP D +    P         DD     C I LP N+P+ + + G    +
Sbjct: 580  SISLLHHYCSKLPHDEYFDPKPQFFFF----DDLGGTICHIILPANAPVHQ-IVGTPQSS 634

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
            +  A + A ++A   L++L  L N L+P  K+      N E ++  + E E       R 
Sbjct: 635  REAAKKDACLKAIEQLHKLGSLSNFLLPHEKDV-----NEESMLASS-EPENNEGEGVRG 688

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ--NKRGRKIHPP-----ENSP 176
            + +   + + F     S      L++  +K  CP+P+++   K G  I  P     E   
Sbjct: 689  ELHEMLVPAVFKESLTSSENWINLHSYFIKF-CPVPEDRIYKKFGLFIRAPLPLEAEQME 747

Query: 177  QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
              L +   +Y                 V+ +L+    +    +     I+   +F KV+ 
Sbjct: 748  LNLHLACGRY-----------------VATKLVPLGCLAFHRDEITQAIYFQEMFLKVIL 790

Query: 237  -----LKKYLMLFDPNCSENS---YFIVPTV--SDSEQIVIDWKFM--TLISEHHNDVIQ 284
                 + +++ L   +  E+S   Y ++P +      ++ +DW+ +   L S     V +
Sbjct: 791  DRSDFVPEFVTLGKNSFFESSPSFYLLLPVLLCDHGNRVTVDWETVGRCLSSPVFRCVEK 850

Query: 285  D-IPEKERENFVFDESKFRDA----VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
            + +P  +           RD     V +P  ++     ++++  I    + RS  P + +
Sbjct: 851  ECLPSDDCLQLANGCRSIRDIENSLVYIPHKKH-----FYFITNIDRGKNARS--PHKCS 903

Query: 340  TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREI 399
            +  ++ E+   ++G+Q++  EQPLL         N L  R   RK        +   +E+
Sbjct: 904  STSSYMEFLIQRFGIQLKYPEQPLLQAKPLFSLHNLLHNR---RK-------EDSVTQEL 953

Query: 400  RESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
             E L       PELC   I  F   +      LPSI++RL  LL+A E+++ +++    G
Sbjct: 954  DEYLID---FPPELCELKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKSLLSASFSEG 1010



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 25/71 (35%), Positives = 36/71 (50%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H G   +RLE +GD+ L Y IT +L+  YP +  G L+ LRS  V+N     + 
Sbjct: 1230 HPSYNKHGGGCYQRLEFLGDAVLDYLITSYLFSVYPKLKPGLLTDLRSALVNNRAFAIVA 1289

Query: 830  KQKVFGESMIA 840
              + F E +I 
Sbjct: 1290 VDRSFNEFLIC 1300


>gi|251764794|sp|Q69LX2.2|DCL2B_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2b; AltName:
            Full=Dicer-like protein 2b; Short=OsDCL2b
          Length = 1377

 Score =  183 bits (465), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 205/453 (45%), Gaps = 70/453 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 975  SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 1034

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 1035 AEEFNPRD-WIIP---------------------------------------------CL 1048

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 1049 DYDERGNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 1108

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  D    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 1109 NIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 1168

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 1169 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 1228

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  ++       FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 1229 SELHRKMSYYLG----QSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 1276

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 1277 CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 1332

Query: 1193 TVEVFGKGSYKGIGRNYC-IAKCTAAKCALKHL 1224
                 G+ +Y       C +AK  A+K  LK L
Sbjct: 1333 ARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1365



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 253 YFIVPTVSDSEQIVIDWKFMTLISE----------HHNDVIQDIPEKERENFVFDESKFR 302
           Y ++P VS      IDW  M   S            H    +DI   + ++  F     +
Sbjct: 761 YLLLPLVSGR----IDWCSMKFSSSPIYEANNKHMTHCHSCRDIDLLQTKDGPFCRCILK 816

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           +++V   + N      FYV     ++   S  P    T  T+++Y+  ++GL +    QP
Sbjct: 817 NSIVCTPHNN-----IFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQP 871

Query: 363 LL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPF 419
           LL    H   R NFL   Y  ++        E   R   E       L PELC  ++ P 
Sbjct: 872 LLAGSKHVKVR-NFLHNYYYKKE-------KEPGDRYSVE-------LPPELCRIIMSPV 916

Query: 420 PASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
            A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 917 SANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 951


>gi|50726394|dbj|BAD34005.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|51091635|dbj|BAD36404.1| CAF protein-like [Oryza sativa Japonica Group]
          Length = 1375

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 147/453 (32%), Positives = 205/453 (45%), Gaps = 70/453 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 973  SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 1032

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 1033 AEEFNPRD-WIIP---------------------------------------------CL 1046

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 1047 DYDERGNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 1106

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  D    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 1107 NIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 1166

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 1167 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 1226

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  ++       FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 1227 SELHRKMSYYLG----QSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 1274

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 1275 CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 1330

Query: 1193 TVEVFGKGSYKGIGRNYC-IAKCTAAKCALKHL 1224
                 G+ +Y       C +AK  A+K  LK L
Sbjct: 1331 ARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1363



 Score = 44.7 bits (104), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 253 YFIVPTVSDSEQIVIDWKFMTLISE----------HHNDVIQDIPEKERENFVFDESKFR 302
           Y ++P VS      IDW  M   S            H    +DI   + ++  F     +
Sbjct: 759 YLLLPLVSGR----IDWCSMKFSSSPIYEANNKHMTHCHSCRDIDLLQTKDGPFCRCILK 814

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           +++V   + N      FYV     ++   S  P    T  T+++Y+  ++GL +    QP
Sbjct: 815 NSIVCTPHNN-----IFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQP 869

Query: 363 LL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPF 419
           LL    H   R NFL   Y  ++        E   R   E       L PELC  ++ P 
Sbjct: 870 LLAGSKHVKVR-NFLHNYYYKKE-------KEPGDRYSVE-------LPPELCRIIMSPV 914

Query: 420 PASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
            A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 915 SANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 949


>gi|156371137|ref|XP_001628622.1| predicted protein [Nematostella vectensis]
 gi|156215603|gb|EDO36559.1| predicted protein [Nematostella vectensis]
          Length = 261

 Score =  183 bits (465), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 103/251 (41%), Positives = 150/251 (59%), Gaps = 6/251 (2%)

Query: 983  EESINYRFKDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            E S+ Y F+D+  LLQA+TH SY    +++   Y++LEFLGDA+LDYL+TRH+ +     
Sbjct: 10   EASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYLVTRHVLQRFPRL 69

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
            SPG +TDLRSA+VNN   A L ++  FH   + +S  L +V++RFV+  +E +    +  
Sbjct: 70   SPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRRLSEIEEKETRPD 129

Query: 1101 YLMEGECDE---AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
             L+    ++    E IEVPK LGDLFE++ GA+Y+D G   +  W V Y ++   IE  S
Sbjct: 130  QLLLTTVEDGRGGEAIEVPKVLGDLFEALLGALYVDCGRDEELAWSVIYPLLTPIIEHYS 189

Query: 1158 VSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAA 1217
            V +P SP R+L+E+ P  A F+   +   G      V V G G + G GRN  IA+ TAA
Sbjct: 190  VHLPISPTRQLVEMMPGAATFTCLSQNVIGHHACELV-VKGYGRFMGTGRNAQIARSTAA 248

Query: 1218 KCALKHLKSAK 1228
            + AL  +KS +
Sbjct: 249  QHALARIKSKQ 259


>gi|449442659|ref|XP_004139098.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Cucumis sativus]
          Length = 1393

 Score =  183 bits (465), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 159/454 (35%), Positives = 214/454 (47%), Gaps = 66/454 (14%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA    L+ T+ N HEG L+  + + VSN  L + G +      +    F
Sbjct: 994  LETLGDSFLKYATGQHLFRTFQNDHEGLLTLKKDRIVSNAALRRRGCEHKISGFIRDEAF 1053

Query: 844  EPRDNWLPPG--YFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +P+ NW  PG  + V +  E  L                     S  KV    K+K    
Sbjct: 1054 DPQ-NWDIPGDTHEVYQLREEVL--------------------FSGRKVYVQRKRK---- 1088

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                 I  K IAD VEALIGAYL   G + A+ F++ +G++V  
Sbjct: 1089 ---------------------IKSKRIADVVEALIGAYLSTGGEKAAMQFLNRIGIEVNF 1127

Query: 962  PVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
                 E     DV  L      E  + Y F D+S LL+AMTH SY L  +  CYQRLEFL
Sbjct: 1128 DFVPYERPFRVDVHKLINVGHLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRLEFL 1187

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LDY IT HLY      +P  LTD+RSA V+N  ++  A++   H    H S  LH+
Sbjct: 1188 GDSVLDYAITVHLYNKYPGMTPELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHDLHK 1247

Query: 1081 VIQRFVKMQAENDFTLNQEY-YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I   V    +N  TL+ E  Y  E E      I  PK LGD+ ES+AGAIY+DSG   +
Sbjct: 1248 HISSAV----QNFETLSSEATYGWESE------ISFPKVLGDVIESLAGAIYVDSGYDKE 1297

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEVFG 1198
             V++    +++  +     ++ K P REL EL + EN +  K        R  VTVEV  
Sbjct: 1298 IVFRSIRPLLEPLVS--PETLKKHPRRELNELCQKENYKLKKTVTSRVNGRSYVTVEVEV 1355

Query: 1199 KG---SYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             G    +  I  +    +  A+K  LK LK A P
Sbjct: 1356 NGRIFKHTEISLDRETGEKVASKEVLKSLKEAYP 1389



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 196/480 (40%), Gaps = 108/480 (22%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + +  P       + D     TC++ LP +SPL+      K
Sbjct: 555 LSSSVGLIYFYCSRLPSDCYFKPTP-------RWDKE---TCTLHLPKSSPLQ--TFSSK 602

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYPD 118
              K    R A +EAC+ L++   L ++L+P  V +E +      +P+  + P I   P+
Sbjct: 603 DDAKYSKQR-ACLEACKQLHKCGALTDNLVPQIVAEESVAQEIGNKPLDDEQP-IYVPPE 660

Query: 119 STKRRQFYHKRMASCFTNCRP---SVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
                          F +C P   SV   CYL  +K          QN      H   ++
Sbjct: 661 ---------------FVHCCPHNSSVVYHCYLIELK----------QN-----FHYDISA 690

Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVS-------------IELIDKNVVLSEENLSN 222
              +  + T+       F + + C +++V              I+L  + V+LS +    
Sbjct: 691 HNIVLAMRTEL-----EFEVQSMCHDLDVDRGSFDVNFKYVGIIKLSPEQVLLSRQFQRT 745

Query: 223 TL-IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM--TLISEHH 279
              + +++ +T  L     + L D       Y ++P+       +I W+ +   L+S   
Sbjct: 746 IFKVLLNHTWTNKLSENNEICLGDG--PRVDYLLLPSTGGE---LISWEIVLSVLVSSQE 800

Query: 280 ----------NDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVH 329
                      DV  D+P K     +    + +++VV   +        + +  +++ ++
Sbjct: 801 YCVHRGISSSKDVSYDVPTKSGLVCI---CRLQNSVVYTPHNGHV----YCITSVLSELN 853

Query: 330 PRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLA 389
             S+   R N    ++EYY +++G+ ++  +QPLL          F    Y+ R      
Sbjct: 854 GNSLLKIRKNEMMAYKEYYKVRHGIDLRFEKQPLLRGKKI-----FPVHNYIKR------ 902

Query: 390 TTSEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIR 447
               + + E R SL +   L PELC  ++ P   +       LP I++RL ++L+A  ++
Sbjct: 903 FRKHKEQGESRNSLVE---LPPELCSIIMSPISVNTLYSYSFLPFIMHRLESMLIASNLK 959



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GDS L YAIT+ LY  YP +    L+ +RS  VSN
Sbjct: 1182 QRLEFLGDSVLDYAITVHLYNKYPGMTPELLTDMRSASVSN 1222


>gi|334185719|ref|NP_001154663.2| protein dicer-like 3 [Arabidopsis thaliana]
 gi|332644323|gb|AEE77844.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1570

 Score =  182 bits (463), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY  +  L+  YP+  EG+LS  R   +SN NL +L   +     + 
Sbjct: 1010 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1069

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE--LSPEKVLEIIKQK 897
               FEPR  W  PG F           + FP     C    + +E  L P+   E     
Sbjct: 1070 NGAFEPR-RWTAPGQF-----------SLFPVP---CKCGIDTREVPLDPKFFTE---NM 1111

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
             + +  + DM  + VV            KS++DC EALIGAY +  G   +L  M WLG+
Sbjct: 1112 TIKIGKSCDMGHRWVV-----------SKSVSDCAEALIGAYYVSGGLSASLHMMKWLGI 1160

Query: 958  KV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
             V      +    N  S        D   + E  I + F  K  L +A+TH+S      +
Sbjct: 1161 DVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RES 1217

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
              Y+RLEFLGD++LD+LITRHL+       PG +TDLRSA VNN  FA +AV+   H   
Sbjct: 1218 YSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHL 1277

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +  +  L   I         ND+ ++ +     G       I+ PKALGD+ ES+AGA+ 
Sbjct: 1278 QRCATVLETQI---------NDYLMSFQKPDETGR--SIPSIQGPKALGDVVESIAGALL 1326

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            +D+ + LD VW+V+  ++   +    + +P  P REL EL      F + +   DG + +
Sbjct: 1327 IDTRLDLDQVWRVFEPLLSPLVTPDKLQLP--PYRELNELCDSLGYFFRVKCSNDGVKAQ 1384

Query: 1192 VTVEV 1196
             T+++
Sbjct: 1385 ATIQL 1389



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 293 NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP-SRTNTYQTFEEYYSLK 351
           N   D++   + VV+  +  +     + + E +++    S F    ++ Y T+ EY++ K
Sbjct: 832 NASSDKNSLEELVVIAIHTGRI----YSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKK 887

Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
           YG+ + +  QPL+ +  +    N L     N + +          R+ + ++     L P
Sbjct: 888 YGIVLAHPNQPLMKLKQSHHAHNLLVD--FNEEMVVKTEPKAGNVRKRKPNIHAH--LPP 943

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           EL      P ++ +    LPS+++RL +L+LA ++R  +   I
Sbjct: 944 ELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSI 986


>gi|334185717|ref|NP_001154662.2| protein dicer-like 3 [Arabidopsis thaliana]
 gi|322518661|sp|Q9LXW7.2|DCL3_ARATH RecName: Full=Endoribonuclease Dicer homolog 3; AltName:
            Full=Dicer-like protein 3; Short=AtDCL3
 gi|332644322|gb|AEE77843.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1580

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY  +  L+  YP+  EG+LS  R   +SN NL +L   +     + 
Sbjct: 1020 SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1079

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE--LSPEKVLEIIKQK 897
               FEPR  W  PG F           + FP     C    + +E  L P+   E     
Sbjct: 1080 NGAFEPR-RWTAPGQF-----------SLFPVP---CKCGIDTREVPLDPKFFTE---NM 1121

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
             + +  + DM  + VV            KS++DC EALIGAY +  G   +L  M WLG+
Sbjct: 1122 TIKIGKSCDMGHRWVV-----------SKSVSDCAEALIGAYYVSGGLSASLHMMKWLGI 1170

Query: 958  KV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
             V      +    N  S        D   + E  I + F  K  L +A+TH+S      +
Sbjct: 1171 DVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RES 1227

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
              Y+RLEFLGD++LD+LITRHL+       PG +TDLRSA VNN  FA +AV+   H   
Sbjct: 1228 YSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHL 1287

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +  +  L   I         ND+ ++ +     G       I+ PKALGD+ ES+AGA+ 
Sbjct: 1288 QRCATVLETQI---------NDYLMSFQKPDETGR--SIPSIQGPKALGDVVESIAGALL 1336

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            +D+ + LD VW+V+  ++   +    + +P  P REL EL      F + +   DG + +
Sbjct: 1337 IDTRLDLDQVWRVFEPLLSPLVTPDKLQLP--PYRELNELCDSLGYFFRVKCSNDGVKAQ 1394

Query: 1192 VTVEV 1196
             T+++
Sbjct: 1395 ATIQL 1399



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 293 NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP-SRTNTYQTFEEYYSLK 351
           N   D++   + VV+  +  +     + + E +++    S F    ++ Y T+ EY++ K
Sbjct: 842 NASSDKNSLEELVVIAIHTGRI----YSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKK 897

Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
           YG+ + +  QPL+ +  +    N L     N + +          R+ + ++     L P
Sbjct: 898 YGIVLAHPNQPLMKLKQSHHAHNLLVD--FNEEMVVKTEPKAGNVRKRKPNIHAH--LPP 953

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           EL      P ++ +    LPS+++RL +L+LA ++R  +   I
Sbjct: 954 ELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSI 996


>gi|15229816|ref|NP_189978.1| protein dicer-like 3 [Arabidopsis thaliana]
 gi|7594553|emb|CAB88120.1| putative protein [Arabidopsis thaliana]
 gi|94450858|gb|ABF19799.1| dicer-like 3 [Arabidopsis thaliana]
 gi|332644321|gb|AEE77842.1| protein dicer-like 3 [Arabidopsis thaliana]
          Length = 1531

 Score =  182 bits (463), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 138/425 (32%), Positives = 203/425 (47%), Gaps = 53/425 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY  +  L+  YP+  EG+LS  R   +SN NL +L   +     + 
Sbjct: 971  SMERLELLGDSVLKYVASCHLFLKYPDKDEGQLSRQRQSIISNSNLHRLTTSRKLQGYIR 1030

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE--LSPEKVLEIIKQK 897
               FEPR  W  PG F           + FP     C    + +E  L P+   E     
Sbjct: 1031 NGAFEPR-RWTAPGQF-----------SLFPVP---CKCGIDTREVPLDPKFFTE---NM 1072

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
             + +  + DM  + VV            KS++DC EALIGAY +  G   +L  M WLG+
Sbjct: 1073 TIKIGKSCDMGHRWVV-----------SKSVSDCAEALIGAYYVSGGLSASLHMMKWLGI 1121

Query: 958  KV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
             V      +    N  S        D   + E  I + F  K  L +A+TH+S      +
Sbjct: 1122 DVDFDPNLVVEAINRVSLRCYIPKEDELIELERKIQHEFSAKFLLKEAITHSSL---RES 1178

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
              Y+RLEFLGD++LD+LITRHL+       PG +TDLRSA VNN  FA +AV+   H   
Sbjct: 1179 YSYERLEFLGDSVLDFLITRHLFNTYEQTGPGEMTDLRSACVNNENFAQVAVKNNLHTHL 1238

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +  +  L   I         ND+ ++ +     G       I+ PKALGD+ ES+AGA+ 
Sbjct: 1239 QRCATVLETQI---------NDYLMSFQKPDETGR--SIPSIQGPKALGDVVESIAGALL 1287

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
            +D+ + LD VW+V+  ++   +    + +P  P REL EL      F + +   DG + +
Sbjct: 1288 IDTRLDLDQVWRVFEPLLSPLVTPDKLQLP--PYRELNELCDSLGYFFRVKCSNDGVKAQ 1345

Query: 1192 VTVEV 1196
             T+++
Sbjct: 1346 ATIQL 1350



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 36/163 (22%), Positives = 75/163 (46%), Gaps = 9/163 (5%)

Query: 293 NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP-SRTNTYQTFEEYYSLK 351
           N   D++   + VV+  +  +     + + E +++    S F    ++ Y T+ EY++ K
Sbjct: 793 NASSDKNSLEELVVIAIHTGRI----YSIVEAVSDSSAMSPFEVDASSGYATYAEYFNKK 848

Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP 411
           YG+ + +  QPL+ +  +    N L     N + +          R+ + ++     L P
Sbjct: 849 YGIVLAHPNQPLMKLKQSHHAHNLLVD--FNEEMVVKTEPKAGNVRKRKPNIHAH--LPP 904

Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           EL      P ++ +    LPS+++RL +L+LA ++R  +   I
Sbjct: 905 ELLARIDVPRAVLKSIYLLPSVMHRLESLMLASQLREEIDCSI 947


>gi|41469333|gb|AAS07189.1| putative ribonuclease III, 5'-partial (with alternative splicing)
            [Oryza sativa Japonica Group]
          Length = 1017

 Score =  182 bits (462), Expect = 9e-43,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 207/454 (45%), Gaps = 68/454 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 611  SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 670

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 671  AEEFNPRD-WIIP---------------------------------------------CL 684

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 685  DYDERDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 744

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  +    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 745  NIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 804

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 805  RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 864

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  +++ +    FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 865  SELHRKMSYYLE-EFGQSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 915

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 916  CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 971

Query: 1193 TVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHL 1224
                 G+ +Y       C  +AK  A+K  LK L
Sbjct: 972  ARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1005



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 100/478 (20%), Positives = 191/478 (39%), Gaps = 87/478 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           +++++ +++ +C++LPSD +    P   I      D    TC++ LP +SP++  +V G 
Sbjct: 173 LNSSVPLIHFFCSKLPSDEYFNPLPRFDI------DKASGTCTLHLPKSSPVQTVNVEGE 226

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLM-----PVTKEFINLYENTEPVVPKTPE-- 112
               K        ++AC+ L+ +  L + L+     P  +E   + EN        PE  
Sbjct: 227 GSILK----ETVCLKACQELHAIGALTDSLLPELDVPCDEEPDIVVENKIEQPSYFPEEF 282

Query: 113 IETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
           ++ +   ++   +Y  +++     C P   +P     + + L C +  +      K+   
Sbjct: 283 VDNWRSFSRLGIYYCYKIS--LEGC-PKTASPT---DILLALKCDLGSDFTSSSFKLPGG 336

Query: 173 ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFM---DY 229
           +++    A +T KY+                  I L  + V+++    +  L F+   D+
Sbjct: 337 QDN----ASVTMKYVG----------------IIHLNQEQVIIARRFQTTILSFLIGDDH 376

Query: 230 LFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISE----------HH 279
           L  +V    KY            Y ++P VS      IDW  M   S            H
Sbjct: 377 L--EVSNGIKYFHEMQVPIGV-VYLLLPLVSGR----IDWCSMKFSSSPIYEANNKHMTH 429

Query: 280 NDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
               +DI   + ++  F     ++++V   + N      FYV     ++   S  P    
Sbjct: 430 CHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNN-----IFYVISGFLDLDANSCLPQHDG 484

Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
           T  T+++Y+  ++GL +    QPLL    H   R NFL   Y  ++        E   R 
Sbjct: 485 TVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVR-NFLHNCYSKKE-------KEPGDRY 536

Query: 399 IRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
             E       L PELC  ++ P  A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 537 SVE-------LPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 587


>gi|414871004|tpg|DAA49561.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
          Length = 1199

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 211/458 (46%), Gaps = 50/458 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY I   L+  YP  HEG LS +RSK V N  L K G  +     + 
Sbjct: 688  SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNATLHKHGIWQSLQGYIR 747

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLP-NLKELSPEKVLEIIKQKC 898
               F+PR    P    +  +     IE  F         +P N   +S +    ++ + C
Sbjct: 748  DAAFDPRRWVAPGQISLRPFPCNCGIETAF---------VPFNGGYISDDPSF-VVGKPC 797

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                                    +  K+++DCVEAL+GAY +  G   A+  M W G+ 
Sbjct: 798  DR------------------GHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRWFGID 839

Query: 959  VI--------PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            V             +  S+      +   ++ E  + Y F  K  LL+A++H S     +
Sbjct: 840  VRCDMELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQELGV 899

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
              CYQRLEFLGD++LD LIT+HLY       PG LTDLRSA V+N  FA   VR   H+ 
Sbjct: 900  DYCYQRLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNNIHNH 959

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L E +  +V+   E     NQ  +L +  C      + PK LGD+ ES+ GAI
Sbjct: 960  LQHGSGILLEQVTEYVRSNLEYHGKENQ--FLQQATC------KAPKVLGDIMESITGAI 1011

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            ++D    +D VWK+   ++   I    +++P  P RELLEL      F + +  ++G  +
Sbjct: 1012 FIDVNFDVDLVWKIVEPLLSPMITPDKLALP--PYRELLELCSHLGCFIESKCTSEGEEL 1069

Query: 1191 RVTVEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
             + ++V  +      +G  RN   AK  AA   L  +K
Sbjct: 1070 IIEMKVQLRDEQLIAQGHDRNGKTAKANAAARILVDMK 1107



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 213/492 (43%), Gaps = 83/492 (16%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           ++ +YC +LP D +    P   +    +D S  + C++ +P N+   RS+ G    +  L
Sbjct: 209 LIYKYCEKLPKDRYYLPKPCFEVG--LKDGS--YQCTLTMPHNAAF-RSIVGPPSSSCNL 263

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
           A ++  +EAC+ L+EL ELD+ L+P+T+E +++  +T        +  + P +TKR++ +
Sbjct: 264 AKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDT-----TDKKCVSGPGTTKRKELH 318

Query: 127 H----KRMASCFTNCRPSVNTPCY-----------LYAVKMKLTCPIPDEQNKRGRKIHP 171
                  ++  + +   +V    Y           LYA  + L   + D+   R      
Sbjct: 319 GTINVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVARSE---- 374

Query: 172 PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
                     +    IP    +   T CG+++++ E + K   L +E   N +    +  
Sbjct: 375 ----------IDLFLIPNKMVYTTMTPCGKIQLNKEQLCKG-KLFQEFFFNGIFGRLFHG 423

Query: 232 TKVLKLKKYLMLFDPN----CSENSYFIVPTVSDSEQIVID----WKFM----------- 272
           ++  +L++  +    +     S+N Y ++P + +S QI  D    W+ +           
Sbjct: 424 SRTDELQREFIFTKGHEIQWGSDNMYLLLP-LRNSSQIQHDPNIYWEAVESCSGTVEQLR 482

Query: 273 ------------TLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFY 320
                        L S   ++  +DI     ++  F  S  +D+VV+  +  +       
Sbjct: 483 NLYLEDGNLNHENLCSHKRSNKGEDIIHLANKSLHF--STVKDSVVLSLHTGRIYSVLDL 540

Query: 321 VAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
           + +   +     M+  + + + +F +YY  KYG+ IQ+  QPLL +  +    N L  + 
Sbjct: 541 ILDKTADDSFDEMYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKM 600

Query: 381 VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVS-LPSILYRLNA 439
             + G    +T      E +E +  +   VP   LIH   A+   KS   LPS+++R+ +
Sbjct: 601 KYQDG----STGNPLLVE-KEQIHAR---VPPELLIHIDVATDILKSFYLLPSVMHRVQS 652

Query: 440 LLLADEIRTAVA 451
           L+LA ++R+ ++
Sbjct: 653 LMLASQLRSNIS 664


>gi|115453927|ref|NP_001050564.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|122246906|sp|Q10HL3.1|DCL2A_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 2a; AltName:
            Full=Dicer-like protein 2a; Short=OsDCL2a
 gi|50399921|gb|AAT76309.1| putative RNA helicase/RNAseIII protein, C-terminus truncated [Oryza
            sativa Japonica Group]
 gi|108709535|gb|ABF97330.1| Type III restriction enzyme, res subunit family protein, expressed
            [Oryza sativa Japonica Group]
 gi|113549035|dbj|BAF12478.1| Os03g0583900 [Oryza sativa Japonica Group]
 gi|215701504|dbj|BAG92928.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1410

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 207/454 (45%), Gaps = 68/454 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 1004 SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 1063

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 1064 AEEFNPRD-WIIP---------------------------------------------CL 1077

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 1078 DYDERDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 1137

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  +    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 1138 NIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 1197

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 1198 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 1257

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  +++ +    FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 1258 SELHRKMSYYLE-EFGQSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 1308

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 1309 CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 1364

Query: 1193 TVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHL 1224
                 G+ +Y       C  +AK  A+K  LK L
Sbjct: 1365 ARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1398



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 102/480 (21%), Positives = 192/480 (40%), Gaps = 91/480 (18%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           +++++ +++ +C++LPSD +    P   I      D    TC++ LP +SP++  +V G 
Sbjct: 566 LNSSVPLIHFFCSKLPSDEYFNPLPRFDI------DKASGTCTLHLPKSSPVQTVNVEGE 619

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIET---Y 116
               K        ++AC+ L+ +  L + L+P     +++  + EP +    +IE    +
Sbjct: 620 GSILK----ETVCLKACQELHAIGALTDSLLPE----LDVPCDEEPDIVVENKIEQPSYF 671

Query: 117 PDS--TKRRQFYHKRMASCFT----NCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIH 170
           P+      R F    +  C+      C P   +P     + + L C +  +      K+ 
Sbjct: 672 PEEFVDNWRSFSRLGIYYCYKISLEGC-PKTASPT---DILLALKCDLGSDFTSSSFKLP 727

Query: 171 PPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFM--- 227
             +++    A +T KY+                  I L  + V+++    +  L F+   
Sbjct: 728 GGQDN----ASVTMKYVG----------------IIHLNQEQVIIARRFQTTILSFLIGD 767

Query: 228 DYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISE---------- 277
           D+L  +V    KY            Y ++P VS      IDW  M   S           
Sbjct: 768 DHL--EVSNGIKYFHEMQVPIGV-VYLLLPLVSGR----IDWCSMKFSSSPIYEANNKHM 820

Query: 278 HHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSR 337
            H    +DI   + ++  F     ++++V   + N      FYV     ++   S  P  
Sbjct: 821 THCHSCKDIDLLQTKDGPFCRCILKNSIVCTPHNN-----IFYVISGFLDLDANSCLPQH 875

Query: 338 TNTYQTFEEYYSLKYGLQIQNLEQPLL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETR 396
             T  T+++Y+  ++GL +    QPLL    H   R NFL   Y  ++        E   
Sbjct: 876 DGTVVTYKDYFKTRHGLTLTFENQPLLAGSKHVKVR-NFLHNCYSKKE-------KEPGD 927

Query: 397 REIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           R   E       L PELC  ++ P  A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 928 RYSVE-------LPPELCRIIMSPVSANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 980


>gi|414871006|tpg|DAA49563.1| TPA: hypothetical protein ZEAMMB73_299457, partial [Zea mays]
          Length = 1517

 Score =  182 bits (462), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 211/458 (46%), Gaps = 50/458 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY I   L+  YP  HEG LS +RSK V N  L K G  +     + 
Sbjct: 1006 SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNATLHKHGIWQSLQGYIR 1065

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLP-NLKELSPEKVLEIIKQKC 898
               F+PR    P    +  +     IE  F         +P N   +S +    ++ + C
Sbjct: 1066 DAAFDPRRWVAPGQISLRPFPCNCGIETAF---------VPFNGGYISDDPSF-VVGKPC 1115

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                                    +  K+++DCVEAL+GAY +  G   A+  M W G+ 
Sbjct: 1116 DR------------------GHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRWFGID 1157

Query: 959  VI--------PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            V             +  S+      +   ++ E  + Y F  K  LL+A++H S     +
Sbjct: 1158 VRCDMELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQELGV 1217

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
              CYQRLEFLGD++LD LIT+HLY       PG LTDLRSA V+N  FA   VR   H+ 
Sbjct: 1218 DYCYQRLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNNIHNH 1277

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L E +  +V+   E     NQ  +L +  C      + PK LGD+ ES+ GAI
Sbjct: 1278 LQHGSGILLEQVTEYVRSNLEYHGKENQ--FLQQATC------KAPKVLGDIMESITGAI 1329

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            ++D    +D VWK+   ++   I    +++P  P RELLEL      F + +  ++G  +
Sbjct: 1330 FIDVNFDVDLVWKIVEPLLSPMITPDKLALP--PYRELLELCSHLGCFIESKCTSEGEEL 1387

Query: 1191 RVTVEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
             + ++V  +      +G  RN   AK  AA   L  +K
Sbjct: 1388 IIEMKVQLRDEQLIAQGHDRNGKTAKANAAARILVDMK 1425



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 213/492 (43%), Gaps = 83/492 (16%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           ++ +YC +LP D +    P   +    +D S  + C++ +P N+   RS+ G    +  L
Sbjct: 527 LIYKYCEKLPKDRYYLPKPCFEVG--LKDGS--YQCTLTMPHNAAF-RSIVGPPSSSCNL 581

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
           A ++  +EAC+ L+EL ELD+ L+P+T+E +++  +T        +  + P +TKR++ +
Sbjct: 582 AKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDT-----TDKKCVSGPGTTKRKELH 636

Query: 127 H----KRMASCFTNCRPSVNTPCY-----------LYAVKMKLTCPIPDEQNKRGRKIHP 171
                  ++  + +   +V    Y           LYA  + L   + D+   R      
Sbjct: 637 GTINVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVARSE---- 692

Query: 172 PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
                     +    IP    +   T CG+++++ E + K   L +E   N +    +  
Sbjct: 693 ----------IDLFLIPNKMVYTTMTPCGKIQLNKEQLCKG-KLFQEFFFNGIFGRLFHG 741

Query: 232 TKVLKLKKYLMLFDPN----CSENSYFIVPTVSDSEQIVID----WKFM----------- 272
           ++  +L++  +    +     S+N Y ++P + +S QI  D    W+ +           
Sbjct: 742 SRTDELQREFIFTKGHEIQWGSDNMYLLLP-LRNSSQIQHDPNIYWEAVESCSGTVEQLR 800

Query: 273 ------------TLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFY 320
                        L S   ++  +DI     ++  F  S  +D+VV+  +  +       
Sbjct: 801 NLYLEDGNLNHENLCSHKRSNKGEDIIHLANKSLHF--STVKDSVVLSLHTGRIYSVLDL 858

Query: 321 VAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
           + +   +     M+  + + + +F +YY  KYG+ IQ+  QPLL +  +    N L  + 
Sbjct: 859 ILDKTADDSFDEMYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKM 918

Query: 381 VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVS-LPSILYRLNA 439
             + G    +T      E +E +  +   VP   LIH   A+   KS   LPS+++R+ +
Sbjct: 919 KYQDG----STGNPLLVE-KEQIHAR---VPPELLIHIDVATDILKSFYLLPSVMHRVQS 970

Query: 440 LLLADEIRTAVA 451
           L+LA ++R+ ++
Sbjct: 971 LMLASQLRSNIS 982


>gi|414871005|tpg|DAA49562.1| TPA: hypothetical protein ZEAMMB73_299457 [Zea mays]
          Length = 1440

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 144/458 (31%), Positives = 211/458 (46%), Gaps = 50/458 (10%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKY I   L+  YP  HEG LS +RSK V N  L K G  +     + 
Sbjct: 1006 SLERLELLGDSVLKYVIGCDLFLRYPMKHEGHLSDMRSKAVCNATLHKHGIWQSLQGYIR 1065

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLP-NLKELSPEKVLEIIKQKC 898
               F+PR    P    +  +     IE  F         +P N   +S +    ++ + C
Sbjct: 1066 DAAFDPRRWVAPGQISLRPFPCNCGIETAF---------VPFNGGYISDDPSF-VVGKPC 1115

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                                    +  K+++DCVEAL+GAY +  G   A+  M W G+ 
Sbjct: 1116 DR------------------GHRWMCSKTVSDCVEALVGAYYVGGGIAAAIWVMRWFGID 1157

Query: 959  VI--------PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            V             +  S+      +   ++ E  + Y F  K  LL+A++H S     +
Sbjct: 1158 VRCDMELVQKAKYNSNASRMCYLSKIKDIEELEAKLKYNFSVKGLLLEAISHPSVQELGV 1217

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
              CYQRLEFLGD++LD LIT+HLY       PG LTDLRSA V+N  FA   VR   H+ 
Sbjct: 1218 DYCYQRLEFLGDSVLDLLITQHLYATHTDVDPGELTDLRSASVSNENFAQAVVRNNIHNH 1277

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +H S  L E +  +V+   E     NQ  +L +  C      + PK LGD+ ES+ GAI
Sbjct: 1278 LQHGSGILLEQVTEYVRSNLEYHGKENQ--FLQQATC------KAPKVLGDIMESITGAI 1329

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            ++D    +D VWK+   ++   I    +++P  P RELLEL      F + +  ++G  +
Sbjct: 1330 FIDVNFDVDLVWKIVEPLLSPMITPDKLALP--PYRELLELCSHLGCFIESKCTSEGEEL 1387

Query: 1191 RVTVEVFGKGSY---KGIGRNYCIAKCTAAKCALKHLK 1225
             + ++V  +      +G  RN   AK  AA   L  +K
Sbjct: 1388 IIEMKVQLRDEQLIAQGHDRNGKTAKANAAARILVDMK 1425



 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 106/492 (21%), Positives = 213/492 (43%), Gaps = 83/492 (16%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLL 66
           ++ +YC +LP D +    P   +    +D S  + C++ +P N+   RS+ G    +  L
Sbjct: 527 LIYKYCEKLPKDRYYLPKPCFEVG--LKDGS--YQCTLTMPHNAAF-RSIVGPPSSSCNL 581

Query: 67  AWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
           A ++  +EAC+ L+EL ELD+ L+P+T+E +++  +T        +  + P +TKR++ +
Sbjct: 582 AKQLVCLEACKKLHELGELDDHLVPLTEEPMDIDTDT-----TDKKCVSGPGTTKRKELH 636

Query: 127 H----KRMASCFTNCRPSVNTPCY-----------LYAVKMKLTCPIPDEQNKRGRKIHP 171
                  ++  + +   +V    Y           LYA  + L   + D+   R      
Sbjct: 637 GTINVHGLSGNWIHESETVILNAYTFDFRCDQEGELYAGFVLLMESVLDDDVARSE---- 692

Query: 172 PENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLF 231
                     +    IP    +   T CG+++++ E + K   L +E   N +    +  
Sbjct: 693 ----------IDLFLIPNKMVYTTMTPCGKIQLNKEQLCKG-KLFQEFFFNGIFGRLFHG 741

Query: 232 TKVLKLKKYLMLFDPN----CSENSYFIVPTVSDSEQIVID----WKFM----------- 272
           ++  +L++  +    +     S+N Y ++P + +S QI  D    W+ +           
Sbjct: 742 SRTDELQREFIFTKGHEIQWGSDNMYLLLP-LRNSSQIQHDPNIYWEAVESCSGTVEQLR 800

Query: 273 ------------TLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFY 320
                        L S   ++  +DI     ++  F  S  +D+VV+  +  +       
Sbjct: 801 NLYLEDGNLNHENLCSHKRSNKGEDIIHLANKSLHF--STVKDSVVLSLHTGRIYSVLDL 858

Query: 321 VAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
           + +   +     M+  + + + +F +YY  KYG+ IQ+  QPLL +  +    N L  + 
Sbjct: 859 ILDKTADDSFDEMYNGKASPFASFVDYYHQKYGIVIQHPGQPLLLLKQSHNAHNLLFSKM 918

Query: 381 VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVS-LPSILYRLNA 439
             + G    +T      E +E +  +   VP   LIH   A+   KS   LPS+++R+ +
Sbjct: 919 KYQDG----STGNPLLVE-KEQIHAR---VPPELLIHIDVATDILKSFYLLPSVMHRVQS 970

Query: 440 LLLADEIRTAVA 451
           L+LA ++R+ ++
Sbjct: 971 LMLASQLRSNIS 982


>gi|218193216|gb|EEC75643.1| hypothetical protein OsI_12390 [Oryza sativa Indica Group]
          Length = 1318

 Score =  182 bits (461), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 146/454 (32%), Positives = 207/454 (45%), Gaps = 68/454 (14%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 912  SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 971

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 972  AEEFNPRD-WIIP---------------------------------------------CL 985

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 986  DYDERDNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 1045

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  +    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 1046 NIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 1105

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 1106 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 1165

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  +++ +    FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 1166 SELHRKMSYYLE-EFGQSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 1216

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 1217 CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 1272

Query: 1193 TVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHL 1224
                 G+ +Y       C  +AK  A+K  LK L
Sbjct: 1273 ARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 1306



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 50/215 (23%), Positives = 86/215 (40%), Gaps = 37/215 (17%)

Query: 253 YFIVPTVSDSEQIVIDWKFMTLISE----------HHNDVIQDIPEKERENFVFDESKFR 302
           Y ++P VS      IDW  M   S            H    +DI   + ++  F     +
Sbjct: 698 YLLLPLVSGR----IDWCSMKFSSSPIYEANNKHMTHCHSCKDIDLLQTKDGPFCRCILK 753

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           +++V   + N      FYV     ++   S  P       T+++Y+  ++GL +    QP
Sbjct: 754 NSIVCTPHNN-----IFYVISGFLDLDANSCLPQHDGIVVTYKDYFKTRHGLTLTFENQP 808

Query: 363 LL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPF 419
           LL    H   R NFL   Y  ++        E   R   E       L PELC  ++ P 
Sbjct: 809 LLAGSKHVKAR-NFLHNCYSKKE-------KEPGDRYSVE-------LPPELCRIIMSPV 853

Query: 420 PASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
            A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 854 SANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 888


>gi|222625282|gb|EEE59414.1| hypothetical protein OsJ_11564 [Oryza sativa Japonica Group]
          Length = 1371

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 146/453 (32%), Positives = 205/453 (45%), Gaps = 70/453 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 969  SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 1028

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 1029 AEEFNPRD-WIIP---------------------------------------------CL 1042

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 1043 DYDERGNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 1102

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  +    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 1103 NIEFHTEIPVERKISMKAEEFINVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 1162

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 1163 RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 1222

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  ++       FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 1223 SELHRKMSYYLG----QSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 1270

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 1271 CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 1326

Query: 1193 TVEVFGKGSYKGIGRNYC-IAKCTAAKCALKHL 1224
                 G+ +Y       C +AK  A+K  LK L
Sbjct: 1327 ARVKAGETTYSATKSGPCKLAKKLASKAVLKDL 1359



 Score = 43.9 bits (102), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 51/215 (23%), Positives = 87/215 (40%), Gaps = 37/215 (17%)

Query: 253 YFIVPTVSDSEQIVIDWKFMTLISE----------HHNDVIQDIPEKERENFVFDESKFR 302
           Y ++P VS      IDW  M   S            H    +DI   + ++  F     +
Sbjct: 755 YLLLPLVSGR----IDWCSMKFSSSPIYEANNKHMTHCHSCRDIDLLQTKDGPFCRCILK 810

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           +++V   + N      FYV     ++   S  P    T  T+++Y+  ++GL +    QP
Sbjct: 811 NSIVCTPHNN-----IFYVISGFLDLDANSRLPQHDGTVVTYKDYFKTRHGLTLTFENQP 865

Query: 363 LL-DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPF 419
           LL    H   R NFL   Y  ++        E   R   E       L PELC  ++ P 
Sbjct: 866 LLAGSKHVKVR-NFLHNCYSKKE-------KEPGDRYSVE-------LPPELCRIIMSPV 910

Query: 420 PASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
            A+       +PSI++R+  +LL+ +++  +   +
Sbjct: 911 SANNLHIFSYVPSIMFRIQCMLLSVKLKVQLGPTV 945


>gi|357115872|ref|XP_003559709.1| PREDICTED: endoribonuclease Dicer homolog 2a-like [Brachypodium
            distachyon]
          Length = 1402

 Score =  181 bits (460), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 153/466 (32%), Positives = 212/466 (45%), Gaps = 79/466 (16%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  LY  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 988  SQESLETLGDSFLKYVTTQHLYTKYKLHHEGTLTKMKKNLISNAALCQLACNNNLVGYIQ 1047

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F P+      G+F+P           F      CLS   +  L              
Sbjct: 1048 GEVFNPK------GWFIPGLGYDTCGNKSF------CLSSNGMYSLR------------- 1082

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                                + SI  K IAD VEALIGAYL   G + A LF++ LG+ +
Sbjct: 1083 --------------------KISIKSKRIADTVEALIGAYLSAAGEQAAFLFINSLGMDI 1122

Query: 960  -----IPP----VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
                 IP     V  PE               E  + Y FKD   L++A+TH SY +   
Sbjct: 1123 GFHSEIPIERNIVIKPEE-------FINIRSLEIILGYNFKDPLLLIEALTHGSYQIAGP 1175

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            T CYQRLEFLGDA+LD+L+T + Y      +P  LTDLRSA VNN  +A  +V+ G +  
Sbjct: 1176 TACYQRLEFLGDAVLDHLVTVYYYNTYPECTPALLTDLRSASVNNNCYAHASVKAGLNKH 1235

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
              H S  LH  +  +++   +  FT     +       EA  I +PK LGD+ ES+AGAI
Sbjct: 1236 ILHSSTELHRKMAYYLENFGQA-FTGPSHGW-------EA-GIGLPKVLGDVIESIAGAI 1286

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLELEPENARFSKPEKLADGR 1188
            YLDS    + VW+     MK  +E L+   +V + P++EL E     +      K  +G 
Sbjct: 1287 YLDSKYDKEMVWRS----MKPLLEPLATPETVERDPVKELQEFCDRRSYSRSYTKTHEGG 1342

Query: 1189 RVRVTVEVFGKGS-YKGI--GRNYCIAKCTAAKCALKHLKSAKPAD 1231
               V  EV  +G+ Y     GR+  +A+  A K  L+ LK+A  A+
Sbjct: 1343 VSSVVAEVQVEGTIYSATRSGRDKTVAQKLAVKSLLEDLKAAAAAN 1388



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 41/209 (19%), Positives = 90/209 (43%), Gaps = 33/209 (15%)

Query: 253 YFIVPTVSDSEQIVIDWKFMTLISEH--------HNDVIQDIPEKERENFVFDESKFRDA 304
           Y ++P VS      IDW  M   +          H    +++   + ++ +      R++
Sbjct: 776 YLLLPLVSGK----IDWCTMKFSAPQEVNNKDVRHCHSCKEVDLLQTKDGLLCRCMLRNS 831

Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
           ++   + ++      Y      +++ +S+   R  +  T+  Y+  ++GL++ N  QPLL
Sbjct: 832 IICTPHNSRL-----YAITGFLDLNAKSLLHLRDGSILTYITYFKTRHGLRLTNENQPLL 886

Query: 365 DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELC--LIHPFPAS 422
                    NFL  R    + ++ ++ + E              L PELC  ++ P PA 
Sbjct: 887 AASKLGQVRNFLHKRNYKNEKVSSSSFAVE--------------LPPELCRVVMSPVPAD 932

Query: 423 LWRKSVSLPSILYRLNALLLADEIRTAVA 451
           +      +PS++YR++ +LL+ +++  + 
Sbjct: 933 ILYSFSIIPSVMYRIHGMLLSAKLKVQLG 961


>gi|110520367|gb|ABG74922.1| Dicer-like 1b protein [Physcomitrella patens]
          Length = 1695

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 145/478 (30%), Positives = 240/478 (50%), Gaps = 60/478 (12%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E + D++L++ ++  L+  +P+ HEG+L+ +R K VSN  L++   +K     + 
Sbjct: 1147 SYERAELLSDAYLEWVVSHRLFLKFPSKHEGQLTRMRQKIVSNSVLYQHALEKGLQSYIQ 1206

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F P   W  PG  VP   +  L +              + KE  PE   E+++    
Sbjct: 1207 ADRFAP-SRWAAPG--VPPAFDEDLRDGD-----------DSDKESKPEVEREVVEIVGE 1252

Query: 900  DLDCTVDMNVQSV------VPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
            + +   ++N +S       +  +  +   +  K++AD VE  +G Y +E G   A  FM+
Sbjct: 1253 EGEIVKELNTESENMEDGEIEGDSGSYRVLSSKTLADVVEVFMGMYYVEGGGEAATHFMN 1312

Query: 954  WLGLKV----------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHA 1003
            W+G+ V                PE+   S   +D F   ++++ + F+++S L++A+THA
Sbjct: 1313 WVGIPVEFDDVETDLATGGCQVPETVMRS---ID-FSSLQKNVGHEFRERSLLVEAITHA 1368

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            S   +    CYQRLEF+GDA+LD+LITR+L+       PG LTDLR+A VNN  FA +AV
Sbjct: 1369 SR-PSLGVPCYQRLEFVGDAVLDHLITRYLFFKYTNLPPGRLTDLRAAAVNNENFARVAV 1427

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
            +  +H   +H S  L   I+ FV  + +E D      + L         D + PK LGD+
Sbjct: 1428 KHSYHLHLRHGSTALETQIRNFVNDIHSELDKPGVNSFGL--------GDFKAPKVLGDI 1479

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA-----R 1177
            FES+AGA++LD+ +    VWKV+  +++  +     ++P  P+R L E   + A     +
Sbjct: 1480 FESIAGALFLDARLDTHQVWKVFEPLLQPMVS--PETLPIHPVRGLQERCQQEAEGLEYK 1537

Query: 1178 FSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHLKSAKPADVK 1233
             S+ E +A       TVEV+  G   G  ++    +A+   A+ AL  LK  +   VK
Sbjct: 1538 VSRAESVA-------TVEVYVDGVQIGSTQSAQKKMAQKLGARNALVKLKDKEVIKVK 1588



 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 49/161 (30%), Positives = 78/161 (48%), Gaps = 20/161 (12%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
             YV  +  ++   S FP +        Y ++ +YY  KYG+++   +QPLL     S   
Sbjct: 1001 LYVDSVRFDMTADSSFPQKDGYLGPLEYTSYADYYKQKYGVELVCKKQPLLRGRGVSHCK 1060

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+             ET  +  ++L K    +L PELCLIHP P SL R +  LP
Sbjct: 1061 NLLSPRF-------------ETSGDSLDALDKTYYVMLPPELCLIHPLPGSLVRGAQRLP 1107

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
            S++ R+ ++LLA +++  +   I   KV L        F++
Sbjct: 1108 SVMRRVESMLLAIQLKHQIDYPIAASKVALTAASGQETFSY 1148



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 32/141 (22%), Positives = 77/141 (54%), Gaps = 11/141 (7%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGH 59
           M++A+ +++ YC++LPSD ++ L P   +++I++   +I ++C ++LP ++P + +V G 
Sbjct: 611 MNSAVGLIHFYCSQLPSDRYSLLRPEFIMNKIEDQRGAIRYSCRLQLPCHAPFE-AVEGP 669

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYP 117
           +  +   A +   +E  + ++E+    + L+    ++E     E +E       E E+ P
Sbjct: 670 ECNSMRGAQQSCVLEGLQKMHEMGAFTDMLLSNKGSREEAAKLEGSE-------EGESLP 722

Query: 118 DSTKRRQFYHKRMASCFTNCR 138
            +++ R++Y + +A      R
Sbjct: 723 GTSRHREYYPEGIADILKGDR 743



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/51 (37%), Positives = 32/51 (62%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            P  +RLE +GD+ L + IT +L+  Y N+  G+L+ LR+  V+N N  ++ 
Sbjct: 1376 PCYQRLEFVGDAVLDHLITRYLFFKYTNLPPGRLTDLRAAAVNNENFARVA 1426


>gi|251764670|sp|A7LFZ6.1|DCL4_ORYSJ RecName: Full=Endoribonuclease Dicer homolog 4; AltName:
            Full=Dicer-like protein 4; Short=OsDCL4; AltName:
            Full=Protein SHOOT ORGANIZATION 1
 gi|152926631|gb|ABS32306.1| dicer-like protein [Oryza sativa Japonica Group]
          Length = 1657

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 1041 SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 1101 DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQ-------MDIHPDN-----RENC- 1141

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 1142 NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1188

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 1189 --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 1245

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 1246 GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 1305

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 1306 IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 1352

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 1353 VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 1411

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 1412 YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1451



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 1237 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1296

Query: 830  KQKVFGESMI 839
             +K   + +I
Sbjct: 1297 VEKSIHKHLI 1306


>gi|218195189|gb|EEC77616.1| hypothetical protein OsI_16596 [Oryza sativa Indica Group]
          Length = 1576

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 960  SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1019

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 1020 DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQ-------MDIHPDN-----RENC- 1060

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 1061 NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1107

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 1108 --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 1164

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 1165 GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 1224

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 1225 IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 1271

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 1272 VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 1330

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 1331 YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1370



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 1156 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1215

Query: 830  KQKVFGESMI 839
             +K   + +I
Sbjct: 1216 VEKSIHKHLI 1225


>gi|32488296|emb|CAE03362.1| OSJNBb0065L13.5 [Oryza sativa Japonica Group]
 gi|116311061|emb|CAH67991.1| OSIGBa0157K09-H0214G12.2 [Oryza sativa Indica Group]
          Length = 1604

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 988  SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1047

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 1048 DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQ-------MDIHPDN-----RENC- 1088

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 1089 NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1135

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 1136 --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 1192

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 1193 GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 1252

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 1253 IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 1299

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 1300 VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 1358

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 1359 YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1398



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 1184 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1243

Query: 830  KQKVFGESMI 839
             +K   + +I
Sbjct: 1244 VEKSIHKHLI 1253


>gi|357167959|ref|XP_003581414.1| PREDICTED: endoribonuclease Dicer homolog 4-like [Brachypodium
            distachyon]
          Length = 1627

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 146/456 (32%), Positives = 221/456 (48%), Gaps = 54/456 (11%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + +Y  + EG+L+  RS  V+N NL +L  ++     + 
Sbjct: 1005 SLERFEVLGDAFLKYVVGRHNFMSYEGLDEGQLTRRRSDIVNNSNLHELSVKRNLQVYIR 1064

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP                T     G P  +     +    E+S       I QK +
Sbjct: 1065 DQQFEP----------------TQFFALGRPCKVVCHADM----EVS-------IHQKNI 1097

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            D D   + NV+        + H +  K+IAD VE+L+GA+L+E G + A  F+ W+G+ V
Sbjct: 1098 DPDRPENCNVRCTK-----SHHWLHKKTIADVVESLLGAFLVEGGFKAAFAFLHWVGIDV 1152

Query: 960  ------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  +  V N  S +LS + L    + EE I Y+FK K  +++A  H S+  ++   C
Sbjct: 1153 DFEDSALYRVLNASSINLSLMNLINVAELEELIGYKFKHKGLIIEAFVHPSFNKHS-GGC 1211

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQ+LEFLGDA+L+YL+T +LY       PG +TDL+S  V N  FA +A++   H +   
Sbjct: 1212 YQKLEFLGDAVLEYLMTSYLYSAYPDLKPGEITDLKSLAVCNDSFAYVAIQKCIHKYIIK 1271

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L + + +F     EN   L         E D  E+   PK LGD+ ES   A+ LD
Sbjct: 1272 DSNHLTKAVSKF-----ENYIKLPN------SEKDLVEEPACPKVLGDIVESCVAAVLLD 1320

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR-RVR 1191
            SG +L+ VWK+   ++K  +    + + P   IREL +         KP K ADG   V+
Sbjct: 1321 SGFNLNYVWKLVLMLLKPVLSFSGMHMNPMREIRELCQCNELELGLPKPMK-ADGEYHVK 1379

Query: 1192 VTVEVFGKG-SYKGIGRNYCIAKCTAAKCALKHLKS 1226
            V V +     S     RN  +A+  AA+  L  LK+
Sbjct: 1380 VEVNINSTMISCTAANRNSKVARKLAARETLSKLKN 1415



 Score = 54.7 bits (130), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 106/471 (22%), Positives = 185/471 (39%), Gaps = 63/471 (13%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           ++ +++RYC  LPSD+F   +P         DD+    C + LP N+   R + G    +
Sbjct: 549 SVSLLHRYCYNLPSDMFFNPSPAF----FYIDDTEGIICRVILPPNAAF-RQMDGQPCQS 603

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
           K  A R A ++AC   +EL  L + L+P      N     +   P         D + R 
Sbjct: 604 KDEAKRDACLKACMKFHELGALTDFLLPGPGSRKN-----KASSPNGSASNKEEDDSLRE 658

Query: 124 QFYHKRMASCF--TNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRK---IHPPENSPQG 178
           + +   + S    + C+       + Y  K     PIP +++ +      I+P     + 
Sbjct: 659 ELHEMLIPSVLKPSRCKQDCLLDLHFYYFKF---FPIPADRHYQMFGLFVINPLPEEAEK 715

Query: 179 LAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
           L +       ++       + G   +   + DK  ++   N     +F+  L  +     
Sbjct: 716 LEVDLHLARGRI------VKTGIKHLGTMVFDKEQMILARNFQE--MFLKILLDRSEFTS 767

Query: 239 KYLMLFDPNCSENS---YFIVPTVSD--SEQIVIDWKFMTLISEHHNDVIQD-------- 285
             ++L + +  E S   Y ++P       +  VIDW   T++    + V +D        
Sbjct: 768 SDVILCNDDTLEISSTFYLLLPIKQKCCGDIFVIDWP--TVVRCLSSPVFRDPVDVSVHG 825

Query: 286 --IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
             IP +     + DE   R  VV          T+F +  I+  ++ RS F        T
Sbjct: 826 SYIPNESLR--LLDEVYSRTDVVGSLIFVPHNNTFFIIDVILDKLNGRSEFNG-----AT 878

Query: 344 FEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL 403
           +EE+Y  ++G+++ + EQPLL         N L  R        L  T++    E+ E  
Sbjct: 879 YEEHYRERFGIELSHPEQPLLKAKQLFNLHNLLHDR--------LRETTDSRGSELVEHF 930

Query: 404 GKKQLLVPELCL--IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVAS 452
            +   L PELC   I  F   +      LPS++ RL   L+A E++  + S
Sbjct: 931 VE---LPPELCSLKITGFSKDMSSSLSLLPSLMCRLENFLVAIELKDLMLS 978



 Score = 48.1 bits (113), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 22/70 (31%), Positives = 40/70 (57%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   ++LE +GD+ L+Y +T +LY  YP++  G+++ L+S  V N +   + 
Sbjct: 1201 HPSFNKHSGGCYQKLEFLGDAVLEYLMTSYLYSAYPDLKPGEITDLKSLAVCNDSFAYVA 1260

Query: 830  KQKVFGESMI 839
             QK   + +I
Sbjct: 1261 IQKCIHKYII 1270


>gi|157279689|dbj|BAF80150.1| SHOOT ORGANIZATION1 [Oryza sativa Japonica Group]
          Length = 1631

 Score =  180 bits (456), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 1015 SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1074

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 1075 DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQ-------MDIHPDN-----RENC- 1115

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 1116 NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1162

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 1163 --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 1219

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 1220 GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 1279

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 1280 IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 1326

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 1327 VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 1385

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 1386 YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 1425



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 1211 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1270

Query: 830  KQKVFGESMI 839
             +K   + +I
Sbjct: 1271 VEKSIHKHLI 1280


>gi|115459356|ref|NP_001053278.1| Os04g0509300 [Oryza sativa Japonica Group]
 gi|113564849|dbj|BAF15192.1| Os04g0509300, partial [Oryza sativa Japonica Group]
          Length = 1090

 Score =  180 bits (456), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 474  SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 533

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 534  DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQM-------DIHPDN-----RENC- 574

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 575  NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 621

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 622  --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 678

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 679  GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 738

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 739  IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 785

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 786  VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 844

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 845  YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 884



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 670 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 729

Query: 830 KQKVFGESMI 839
            +K   + +I
Sbjct: 730 VEKSIHKHLI 739


>gi|215694849|dbj|BAG90040.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 1058

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 152/460 (33%), Positives = 215/460 (46%), Gaps = 62/460 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 442  SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 501

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 502  DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQM-------DIHPDN-----RENC- 542

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 543  NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 589

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 590  --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 646

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 647  GCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 706

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGA 1129
               S  L   I +F             E Y  L   E D  E+   PKALGD+ ES  GA
Sbjct: 707  IKDSNHLTSAISKF-------------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGA 753

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR 1188
            + LDSG +L+ VWKV   ++K  +   ++   P   +REL +         KP K ADG 
Sbjct: 754  VLLDSGFNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGE 812

Query: 1189 -RVRVTVEVFGKGSY-KGIGRNYCIAKCTAAKCALKHLKS 1226
              V+V V +  K        RN   A+  AA+  L  LK+
Sbjct: 813  YHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKN 852



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 41/70 (58%)

Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            P    H+G   +RLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 638 HPSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 697

Query: 830 KQKVFGESMI 839
            +K   + +I
Sbjct: 698 VEKSIHKHLI 707


>gi|449505410|ref|XP_004162460.1| PREDICTED: LOW QUALITY PROTEIN: dicer-like protein 4-like [Cucumis
            sativus]
          Length = 1228

 Score =  179 bits (455), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 134/398 (33%), Positives = 189/398 (47%), Gaps = 52/398 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDSFLK+A+  +L+ T+    EG+L+  RS  V N+NL KL  +K     + 
Sbjct: 615  SLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLLKLATRKNLQVYIR 674

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               FEP   +L                          L  P  +  + E   +I      
Sbjct: 675  DQPFEPSQFYL--------------------------LGRPCPRICNEETSKDIHSHD-- 706

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
              D T +              H +  K+I+D VEAL+GA+L++ G + A+ F+ W+G++V
Sbjct: 707  --DATNNAKANETKCSK--GHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIQV 762

Query: 960  ---IPPVTNPESKHLSDVLL-DGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  VT+      + VLL D  D    + S+ +RF  K  LLQA+ H SY  +    C
Sbjct: 763  EFEASLVTDALMASNAYVLLADSIDISALQNSLGHRFLHKGLLLQALVHPSYHKHG-GGC 821

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA+LDYLIT +LY       PG LTDLRS  V N  FA++AV   F+ F   
Sbjct: 822  YQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLLC 881

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I+ +V       F           E D  E    PKALGDL ES  GA+ +D
Sbjct: 882  DSTSLLSDIKSYVHFIKAPPF-----------ERDSLEQPRCPKALGDLVESSVGAVLVD 930

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            +G  ++ VWK+    +   +      +  SPIR++ E 
Sbjct: 931  TGFDMNCVWKIMLSFIDPIMSFSGFQL--SPIRDITEF 966



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 106/489 (21%), Positives = 199/489 (40%), Gaps = 72/489 (14%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           +I +++ YC++LP D +    P  +      DD     C + LP N+P+ + V+     +
Sbjct: 158 SISLLHEYCSKLPHDDYFDPKPQFSYY----DDLGGTVCHVNLPSNAPIPQIVS-RSQSS 212

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
           K  A + A ++A   L++L  L + L+P+         N +     + + ++  D T RR
Sbjct: 213 KDAAKKDACLKAVEELHKLGALSDYLLPMRGRG---SANEQESGLNSSDSDSSEDETSRR 269

Query: 124 QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC-PIPDEQNKRGRKIH-----PPENSPQ 177
           + +     +     + S     YL      + C P P ++N +   +      P E    
Sbjct: 270 ELHEMIFPAAL---KESWTGSGYLVLYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERM 326

Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV-LSEENLSNTLIFMDYLFTKVLK 236
           GL +   +                  V + LI   VV L EE ++    F +     +L 
Sbjct: 327 GLELHLAR---------------GRSVMVNLIPSGVVELLEEEITQAESFQEMFLKVILD 371

Query: 237 LKKYLMLFDP---NCSE---NSYFIVPTV-SDSE-QIVIDWKFM--TLISE-HHND---V 282
             +++  + P   N S    +SY ++P +  D+E  + IDW  +   L S+   ND   +
Sbjct: 372 RLEFVQEYIPLRNNASRSVSSSYLLLPMIFHDNEGSLFIDWNVIRRCLSSKIFQNDACLI 431

Query: 283 IQDIPEKERENFVFD----ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
           ++     +    ++D     S   +++V   Y+ +F     +V  I    +  S +  + 
Sbjct: 432 VKGTASSDTHLMLYDGHRRSSDIENSLVYVPYKGEFX----FVTNIERGKNGHSQY--KN 485

Query: 339 NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
           + + +  E+   K+G+ +   EQPLL         N+L     NRK        +   R 
Sbjct: 486 SGFSSHFEHLKTKFGIHLNYPEQPLLRAKPLFLLHNWLH----NRK------REDSEARH 535

Query: 399 IRESLGKKQLLVPELCL--IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
           + E   +   L PE+C   I  F   +      LPSI++RL  LL+A E++  +A+    
Sbjct: 536 LEEYFIE---LPPEVCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKCRLAAAFPA 592

Query: 457 GKVILDEKV 465
           G  +   ++
Sbjct: 593 GAEVTANRI 601



 Score = 48.9 bits (115), Expect = 0.020,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%)

Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            P    H G   +RLE +GD+ L Y IT +LY  YP +  G+L+ LRS  V N     + 
Sbjct: 811 HPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVA 870

Query: 830 KQKVF 834
             + F
Sbjct: 871 VDRFF 875


>gi|222619725|gb|EEE55857.1| hypothetical protein OsJ_04485 [Oryza sativa Japonica Group]
          Length = 1839

 Score =  179 bits (454), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 137/428 (32%), Positives = 201/428 (46%), Gaps = 66/428 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA             EG+LS +R   + N  L+KLG ++     + 
Sbjct: 1010 SMERLELLGDSVLKYA------------DEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1057

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG            +     S   C   P   E+  + +  II  K +
Sbjct: 1058 DAAFDPR-RWLAPG------------QLSIRPSPCEC---PVKSEVVTDDI-HIIDDKAI 1100

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             L    D                +  K+IADCVEA+IGAY    G R A+  + WLG+  
Sbjct: 1101 VLGKACDKG-----------HRWMCSKTIADCVEAIIGAYYAGGGLRAAMAVLKWLGIGA 1149

Query: 960  IPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                   E   +   +L             F+  E  + Y F  K  L++A+TH S    
Sbjct: 1150 -----EIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQEL 1204

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CY+RLEFLGDA+LD L+TR+L+   +  + G LTDLRSA VNN  FA +AV+  FH
Sbjct: 1205 GAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFH 1264

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
            HF +H S  L + I  +V     +  ++++   L +G        + PK LGD+ ES+AG
Sbjct: 1265 HFLQHSSGLLLDQITEYVNRLEGS--SMDKVELLSDGL------PKGPKVLGDIVESIAG 1316

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGR 1188
            AI LD+ + LD VW ++  ++   +   ++ +P  P REL+E   ++  F        G 
Sbjct: 1317 AILLDTKLDLDVVWGIFEPLLSPIVTPENLELP--PYRELIEWCGKHGYFVGINCRDQGD 1374

Query: 1189 RVRVTVEV 1196
             V  T++V
Sbjct: 1375 TVVATLDV 1382



 Score = 70.1 bits (170), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 204/486 (41%), Gaps = 63/486 (12%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D++I IV RYC +LP D     +P  T      DD   + C++ LP ++ L+  V G K 
Sbjct: 531 DSSISIVYRYCEKLPQD--KCYSPKPTFEFTHHDDG--YVCTLALPPSAVLQILV-GPKA 585

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                A ++  ++AC+ L+EL  LD+ L       +++ +    +V K     T   +TK
Sbjct: 586 RNMHKAKQLVCLDACKKLHELGALDDHLC------LSVEDPVPEIVSKNKG--TGIGTTK 637

Query: 122 RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRK--IHPPENSPQGL 179
           R++ +       ++    S  T   L + KM   C   D+  +   +  +      P  +
Sbjct: 638 RKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVC---DQAGQIYSEFVLLIDATLPDEV 694

Query: 180 AILTTK-YIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
           A L    Y+         + CG +E+  + +++   L +  L N L    +  +KV    
Sbjct: 695 ATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQ-AKLFQGLLFNGLFGKLFTRSKVPNAP 753

Query: 239 KYLMLFDPNC----SENSYFIVPT-VSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
           +  +L   +     + + Y ++PT  S    + I+W  +   +     + +   E +RE 
Sbjct: 754 REFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLMRRIYSENKREL 813

Query: 294 F-VFDESK-----------------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP 335
             +FD  +                  +D VV+  +  +      Y A  +T +   S F 
Sbjct: 814 LGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKI-----YTALDITELSGDSAFD 868

Query: 336 SRTNT----YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGI--NLA 389
             ++     ++TF EY+  KYG+ +++  QPLL +  +    N L+ ++ +   +  N++
Sbjct: 869 GASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDEGNVVENMS 928

Query: 390 TTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
             +      +      +  + PEL +    P  + R     P+++YR+ +L LA ++R  
Sbjct: 929 NGT-----PVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLASQLR-- 981

Query: 450 VASEIG 455
             SEIG
Sbjct: 982 --SEIG 985


>gi|168039663|ref|XP_001772316.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162676303|gb|EDQ62787.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 1275

 Score =  178 bits (452), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 148/462 (32%), Positives = 224/462 (48%), Gaps = 74/462 (16%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GD+FL+ +++  L+  +  + EG+LS  R+  + N  L +LG+++    S  + + 
Sbjct: 532  LELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLICNKMLERLGRERGIMVSK-SCRD 590

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
              R  +      +    E  + +  F    W           +P +V E           
Sbjct: 591  TTRSTYKQFEIMINLVSENYIRDTQFSPKEWA----------TPGRVRE----------- 629

Query: 904  TVDMNVQSVVPYNLVTQHSIP---DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV- 959
                           TQ  +P    K+IAD  EALIGA+ I  G   A   M WLG +V 
Sbjct: 630  ---------------TQCKLPPLQGKTIADVFEALIGAHYIHGGVEAAQAMMGWLGCEVG 674

Query: 960  IPPVTNPESK---HLSDVLLD--GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            +      E++   H    LL      + E  +NY+F++K  L++A+THAS   ++  DCY
Sbjct: 675  VSSSIREEARTRVHGQLELLSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHS-GDCY 733

Query: 1015 QRLEFLGDAILDYLITRHLYEDER--AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            QRLEFLGDA+LD+LIT+H Y +       PG LTDLRSA VNN  FA +AVR   H +  
Sbjct: 734  QRLEFLGDAVLDFLITKHFYANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLL 793

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H S  L   + ++V                 + +C        PK L DL ES+AGA++L
Sbjct: 794  HNSSDLAARVDKYVHGST------------TDAQCHGWNGDSGPKVLSDLVESLAGAVFL 841

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP------EKLAD 1186
            DSG  LDTVW V+ +++K  +   ++ +   PIREL EL  +  +F +P      E + D
Sbjct: 842  DSGYKLDTVWNVFKQLLKPLVTPATLRL--EPIRELWEL-CQTEKFGEPNYKKKREAMGD 898

Query: 1187 GRRVRVTVEVFGKGSYKGIGR--NYCIAKCTAAKCALKHLKS 1226
               + VTVE+  + +  G+GR  +   A+  AA  AL+ LK+
Sbjct: 899  -FDMTVTVELKDE-TITGVGRKPDEKSARKVAAIQALETLKT 938



 Score = 64.3 bits (155), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 106/484 (21%), Positives = 204/484 (42%), Gaps = 88/484 (18%)

Query: 4   AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
           ++ ++++YCARL  D F    P  + SE    D     C+I+LP ++ L +SV G  + +
Sbjct: 73  SVSLLHQYCARLAHDSFYTPTPQFSYSE----DGSGVKCTIKLPTDA-LVQSVEGRPVSS 127

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
           +  A R+A + AC  LY+   L   L+  +KE  N Y + + + P++       +ST  R
Sbjct: 128 QADAKRVACLIACERLYDAGALTELLLLKSKE--NAY-SLDAIAPES-------NSTTGR 177

Query: 124 QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE-QNKRGRKIHPPENSPQGLAIL 182
                R                         +  +PD      G  ++  E     ++ +
Sbjct: 178 DPLPSR-------------------------SIIVPDAFSGTWGSGLNSVELHAYAISFV 212

Query: 183 TTKYIPKVCSFPIFTRC------GEVEVSIELIDKNVVLSE-----------ENLSNTLI 225
            T       +F +F         G +EV ++L ++ +V ++           + L N   
Sbjct: 213 ATPNDRAYVNFGLFLEADMGPEAGSIEVELQLSNRRLVNAKCSPCGTILFEPDQLRNAKS 272

Query: 226 FMDYLFTKVLKLKKYLMLFDPNCSENS---YFIVPTV--SDSEQIVIDWKFMT-LISE-- 277
           F + +F+ VL  K  +   + +   NS   Y ++P     D+  + IDW  +  LIS+  
Sbjct: 273 FQERIFSSVLDQKPPVPNIELSGEWNSNRLYLLLPLKEKQDALPLSIDWDCIEDLISDVM 332

Query: 278 HHNDVIQDIP-EKERENFV------FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
              + ++++P E  R + +      F      ++++   +  +     +   E++ +++ 
Sbjct: 333 KGYNTLEEVPSEIPRSSLLRLIDGYFPVEHVTNSLIQTEHTGK--RCLYCARELIPDMNG 390

Query: 331 RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
           +S    + + Y ++ +YY  K+   +  +EQP+L         N LT R          T
Sbjct: 391 QSPMIMKVSKYNSYSDYYLKKHNRTLNFVEQPMLKAKPLIQVNNLLTQR----------T 440

Query: 391 TSEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRT 448
           TSE    E +++    +L + ELC  ++     +L      LPS ++RL  LLLA + R 
Sbjct: 441 TSERPAAEEQKTESLVELPL-ELCKIMVKGLSCALTNGISLLPSFMHRLEGLLLAVQFRK 499

Query: 449 AVAS 452
           ++ S
Sbjct: 500 SLPS 503


>gi|297812215|ref|XP_002873991.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297319828|gb|EFH50250.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1693

 Score =  178 bits (451), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 127/402 (31%), Positives = 198/402 (49%), Gaps = 51/402 (12%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S +RLE +GD+FLK+A++  L+  +  + EG+L+  RSK V+N NL +L  ++   
Sbjct: 1106 HERLSLERLEVLGDAFLKFAVSRHLFLHHDRLDEGELTRRRSKAVNNSNLCRLAIKRNL- 1164

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
                  +   RD  L P         T     G P  +  C  + + +  S  +V  +++
Sbjct: 1165 ------QVYIRDQALDP---------TQFFAFGHPCRV-TCDEVTSEEVHSLNRVPGLLE 1208

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                ++ C+                H +  K+IAD VEAL+GA+L++ G +GA+ F+SW+
Sbjct: 1209 SNS-EIRCSKG-------------HHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLSWI 1254

Query: 956  GLKV------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
            G+ V      +        +++     +  +  E  ++Y F  K  L+QA  H SY  + 
Sbjct: 1255 GVNVDFESLQVQDACIASRRYMPLTTRNNLEALENQLDYNFLHKGLLVQAFIHPSYNRHG 1314

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
               CYQRLEFLGDA+LDYL+T + +       PG LTDLRS  VNN   A++AV      
Sbjct: 1315 -GGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNKALANVAVSFSLKR 1373

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            F    S  LHE I+ +   +A +                 +E    PK LGDL ES  GA
Sbjct: 1374 FLFCESVYLHEAIEDYTNFRAASPLA-----------SGPSEGPRCPKVLGDLVESCLGA 1422

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            ++LD G +L+ VW +    +   ++ LS ++  SPI+EL+EL
Sbjct: 1423 LFLDCGFNLNHVWTMMLSFL-DPVKNLS-NLQISPIKELIEL 1462



 Score = 45.1 bits (105), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
              P    H G   +RLE +GD+ L Y +T + +  +P +  G+L+ LRS  V+N  L  +
Sbjct: 1306 IHPSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNKALANV 1365

Query: 829  G-----KQKVFGESM 838
                  K+ +F ES+
Sbjct: 1366 AVSFSLKRFLFCESV 1380



 Score = 42.4 bits (98), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 28/95 (29%), Positives = 51/95 (53%), Gaps = 3/95 (3%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           ++I ++ +YC+RLP D F +  P      + E    +  C I LP N+P+   V+   +P
Sbjct: 648 SSISLLYKYCSRLPHDEFFQPKPEFQFKPVNEFGGTI--CRITLPANAPISEIVSS-LLP 704

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI 97
           +   A + A ++A   L+ L  L++ L+P +K+ I
Sbjct: 705 STEAAKKDACLKAVYELHNLGVLNDFLLPDSKDEI 739


>gi|449457995|ref|XP_004146733.1| PREDICTED: dicer-like protein 4-like [Cucumis sativus]
          Length = 1657

 Score =  177 bits (450), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 133/398 (33%), Positives = 190/398 (47%), Gaps = 52/398 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDSFLK+A+  +L+ T+    EG+L+  RS  V N+NL KL  +K       
Sbjct: 1044 SLERLEILGDSFLKFAVARYLFLTHDKFDEGELTRRRSYLVKNFNLLKLATRK------- 1096

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
                                L+  + +  F  S +  L  P  +  + E   +I      
Sbjct: 1097 -------------------NLQVYIRDQPFEPSQFYLLGRPCPRICNEETSKDIHSHD-- 1135

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
              D T +              H +  K+I+D VEAL+GA+L++ G + A+ F+ W+G++V
Sbjct: 1136 --DATNNAKANETKCSK--GHHWLQKKTISDVVEALVGAFLVDSGFKAAIAFLKWIGIQV 1191

Query: 960  ---IPPVTNPESKHLSDVLL-DGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  VT+      + VLL D  D    + S+ +RF  K  LLQA+ H SY  +    C
Sbjct: 1192 EFEASLVTDALMASNAYVLLADSIDISALQNSLGHRFLHKGLLLQALVHPSYHKHG-GGC 1250

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA+LDYLIT +LY       PG LTDLRS  V N  FA++AV   F+ F   
Sbjct: 1251 YQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVAVDRFFYKFLLC 1310

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S  L   I+ +V       F           E D  E    PKALGDL ES  GA+ +D
Sbjct: 1311 DSTSLLSDIKSYVHFIKAPPF-----------ERDSLEQPRCPKALGDLVESSVGAVLVD 1359

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            +G  ++ VWK+    +   +      +  SPIR++ E 
Sbjct: 1360 TGFDMNCVWKIMLSFIDPIMSFSGFQL--SPIRDITEF 1395



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 107/489 (21%), Positives = 200/489 (40%), Gaps = 72/489 (14%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I +++ YC++LP D +    P  +      DD     C + LP N+P+ + V+     +
Sbjct: 587  SISLLHEYCSKLPHDDYFDPKPQFSYY----DDLGGTVCHVNLPSNAPIPQIVS-RSQSS 641

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
            K  A + A ++A   L++L  L + L+P+         N +     + + ++  D T RR
Sbjct: 642  KDAAKKDACLKAVEELHKLGALSDYLLPMRGRG---SANEQESGLNSSDSDSSEDETSRR 698

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC-PIPDEQNKRGRKIH-----PPENSPQ 177
            + +     +     + S     YL      + C P P ++N +   +      P E    
Sbjct: 699  ELHEMIFPAAL---KESWTGSGYLVLYCYHIKCTPDPRDRNYKEFGLFVKAPLPQEAERM 755

Query: 178  GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV-LSEENLSNTLIFMDYLFTKVLK 236
            GL +   +                  V + LI   VV L EE ++    F +     +L 
Sbjct: 756  GLELHLAR---------------GRSVMVNLIPSGVVELLEEEITQAESFQEMFLKVILD 800

Query: 237  LKKYLMLFDP---NCSE---NSYFIVPTV-SDSE-QIVIDWKFM--TLISE-HHND---V 282
              +++  + P   N S    +SY ++P +  D+E  + IDW  +   L S+   ND   +
Sbjct: 801  RLEFVQEYIPLRNNASRSVSSSYLLLPMIFHDNEGSLFIDWNVIRRCLSSKIFQNDACLI 860

Query: 283  IQDIPEKERENFVFD----ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT 338
            ++     +    ++D     S   +++V   Y+ +F    F+V  I    +  S +  + 
Sbjct: 861  VKGTASSDTHLMLYDGHRRSSDIENSLVYVPYKGEF----FFVTNIERGKNGHSQY--KN 914

Query: 339  NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
            + + +  E+   K+G+ +   EQPLL         N+L     NRK        +   R 
Sbjct: 915  SGFSSHFEHLKTKFGIHLNYPEQPLLRAKPLFLLHNWLH----NRK------REDSEARH 964

Query: 399  IRESLGKKQLLVPELCL--IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
            + E   +   L PE+C   I  F   +      LPSI++RL  LL+A E++  +A+    
Sbjct: 965  LEEYFIE---LPPEVCQLKIIGFSKDIGSSISLLPSIMHRLENLLVAIELKCRLAAAFPA 1021

Query: 457  GKVILDEKV 465
            G  +   ++
Sbjct: 1022 GAEVTANRI 1030



 Score = 48.9 bits (115), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 24/65 (36%), Positives = 33/65 (50%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H G   +RLE +GD+ L Y IT +LY  YP +  G+L+ LRS  V N     + 
Sbjct: 1240 HPSYHKHGGGCYQRLEFLGDAVLDYLITSYLYSAYPKLKPGQLTDLRSVFVRNEAFANVA 1299

Query: 830  KQKVF 834
              + F
Sbjct: 1300 VDRFF 1304


>gi|340386816|ref|XP_003391904.1| PREDICTED: endoribonuclease Dicer-like, partial [Amphimedon
            queenslandica]
          Length = 380

 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/363 (31%), Positives = 179/363 (49%), Gaps = 69/363 (19%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-------IPPVTNPESKH--- 970
            H + DKS+AD VEALIGA+ +  G  G +  M W G+K+        PP +   + H   
Sbjct: 19   HKVTDKSVADTVEALIGAHTVAGGLEGGITLMKWFGIKINDGSSTIAPPKSTSSNTHSLL 78

Query: 971  --------------------------------LSDVLLDGFDKFEESINYRFKDKSYLLQ 998
                                              + +L      +  I Y FK++  L++
Sbjct: 79   LAESDSIFSSHFRSPPAPKLASKLAPLDKAISTRNRILPQVSSIQGKIEYSFKNELLLIE 138

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            AMTH+SY  N +T CYQRLEFLGDAILDYL+T H+Y+ + +  PG +T+LRSALV N  F
Sbjct: 139  AMTHSSYHRNDITGCYQRLEFLGDAILDYLVTCHIYQSDSSAEPGRMTELRSALVCNSRF 198

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV--- 1115
            A LA+ L  H    H SP L   ++++ +   + +   ++E  L E   ++ +  +V   
Sbjct: 199  AELAISLNLHRSLCHGSPNLFNDMKKYAQSLKQRE-KEDRERKLEEMSINDDDSAQVIVE 257

Query: 1116 --------------------PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                                PK+L D FE++AGA+++DSGM+L TVW+ +   ++   E+
Sbjct: 258  SMEDGDIDDDEDEDDDIIEPPKSLSDCFEALAGAVFIDSGMNLQTVWETFSPFLEPLFEK 317

Query: 1156 LSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK-GIGRNYCIAKC 1214
                 P +PI EL +L P++    K + L++G+  +  +E+  K   +    R+Y  AK 
Sbjct: 318  FKNDPPLTPICELHKLIPKDLEVKK-KVLSEGKS-QCIIEIKDKNICEVATARSYKNAKN 375

Query: 1215 TAA 1217
             AA
Sbjct: 376  FAA 378


>gi|218189575|gb|EEC72002.1| hypothetical protein OsI_04862 [Oryza sativa Indica Group]
          Length = 1858

 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 136/429 (31%), Positives = 202/429 (47%), Gaps = 68/429 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDS LKYA             EG+LS +R   + N  L+KLG ++     + 
Sbjct: 1010 SMERLELLGDSVLKYA------------DEGQLSSIRCHMICNATLYKLGIERNVQGYVR 1057

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+PR  WL PG            +     S   C   P   E+  + +  II  K +
Sbjct: 1058 DAAFDPR-RWLAPG------------QLSIRPSPCEC---PVKSEVVTDDI-HIIDDKAI 1100

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             L    D                +  K+IADC EA+IGAY    G R A+  + WLG+  
Sbjct: 1101 VLGKACDKG-----------HRWMCSKTIADCFEAIIGAYYAGGGLRAAMAVLKWLGIGA 1149

Query: 960  IPPVTNPESKHLSDVLLDG-----------FDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                   E   +   +L             F+  E  + Y F  K  L++A+TH S    
Sbjct: 1150 -----EIEEDLIVQAILSASVQTYLPKDNVFEMLEAKLGYSFSVKGLLVEALTHPSQQEL 1204

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CY+RLEFLGDA+LD L+TR+L+   +  + G LTDLRSA VNN  FA +AV+  FH
Sbjct: 1205 GAKYCYERLEFLGDAVLDILLTRYLFNSHKDTNEGELTDLRSASVNNENFAQVAVKHNFH 1264

Query: 1069 HFFKHLSPGLHEVIQRFV-KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            HF +H S  L + I  +V +++     ++++   L +G        + PK LGD+ ES+A
Sbjct: 1265 HFLQHSSGLLLDQITEYVNRLEGS---SMDKVELLSDGL------PKGPKVLGDIVESIA 1315

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
            GAI LD+ + LD VW ++  ++   +   ++ +P  P REL+E   ++  F        G
Sbjct: 1316 GAILLDTKLDLDVVWGIFEPLLSPIVTPENLELP--PYRELIEWCGKHGYFVGINCRDQG 1373

Query: 1188 RRVRVTVEV 1196
              V  T++V
Sbjct: 1374 DTVVATLDV 1382



 Score = 70.1 bits (170), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 106/486 (21%), Positives = 204/486 (41%), Gaps = 63/486 (12%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D++I IV RYC +LP D     +P  T      DD   + C++ LP ++ L+  V G K 
Sbjct: 531 DSSISIVYRYCEKLPQD--KCYSPKPTFEFTHHDDG--YVCTLALPPSAVLQILV-GPKA 585

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
                A ++  ++AC+ L+EL  LD+ L       +++ +    +V K     T   +TK
Sbjct: 586 RNMHKAKQLVCLDACKKLHELGALDDHLC------LSVEDPVPEIVSKNKG--TGIGTTK 637

Query: 122 RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRK--IHPPENSPQGL 179
           R++ +       ++    S  T   L + KM   C   D+  +   +  +      P  +
Sbjct: 638 RKELHGTTRIHAWSGNWVSKKTALKLQSYKMNFVC---DQAGQIYSEFVLLIDATLPDEV 694

Query: 180 AILTTK-YIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
           A L    Y+         + CG +E+  + +++   L +  L N L    +  +KV    
Sbjct: 695 ATLEIDLYLHDKMVKTSVSSCGLLELDAQQMEQ-AKLFQGLLFNGLFGKLFTRSKVPNAP 753

Query: 239 KYLMLFDPNC----SENSYFIVPT-VSDSEQIVIDWKFMTLISEHHNDVIQDIPEKEREN 293
           +  +L   +     + + Y ++PT  S    + I+W  +   +     + +   E +RE 
Sbjct: 754 REFILNKEDTFVWNTASVYLLLPTNPSFDSNVCINWSVIDAAATAVKLMRRIYSENKREL 813

Query: 294 F-VFDESK-----------------FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFP 335
             +FD  +                  +D VV+  +  +      Y A  +T +   S F 
Sbjct: 814 LGIFDSDQNVGDLIHLANKSCKANSLKDMVVLAVHTGKI-----YTALDITELSGDSAFD 868

Query: 336 SRTNT----YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGI--NLA 389
             ++     ++TF EY+  KYG+ +++  QPLL +  +    N L+ ++ +   +  N++
Sbjct: 869 GASDKKECKFRTFAEYFKKKYGIVLRHPSQPLLVLKPSHNPHNLLSSKFRDEGNVVENMS 928

Query: 390 TTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
             +      +      +  + PEL +    P  + R     P+++YR+ +L LA ++R  
Sbjct: 929 NGT-----PVVNKTSNRVHMPPELLIPLDLPVEILRSFYLFPALMYRIESLTLASQLR-- 981

Query: 450 VASEIG 455
             SEIG
Sbjct: 982 --SEIG 985


>gi|359484756|ref|XP_002264486.2| PREDICTED: dicer-like protein 4 [Vitis vinifera]
          Length = 1622

 Score =  177 bits (449), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 193/402 (48%), Gaps = 63/402 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+   L+  Y  + EG+L+  RS  V+N NLFKL  ++     + 
Sbjct: 1028 SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIR 1087

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+P   +   G+  P+  E    E    +    C   P           E+   KC 
Sbjct: 1088 DQSFDP-GQFFALGHRCPRICEKE-TEMAIHS---RCGKTPTT---------EVRCSKC- 1132

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                                 H +  K+IAD VEAL+GA++++ G + A +F+ W+G++V
Sbjct: 1133 --------------------HHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGIQV 1172

Query: 960  ------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  +       + ++           E+ + + F  K  LLQA+ H SY  +    C
Sbjct: 1173 DFEAFQVINACISSTSYMQLASSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHG-GGC 1231

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA+LDYLIT +LY       PG +TDLRS  VNN  FA++AV    H F   
Sbjct: 1232 YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLIC 1291

Query: 1074 LSPGLHEVIQRFVKMQAENDF----TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
             +  L E I+++V      DF    TL+++ +         E  + PKALGDL ES  GA
Sbjct: 1292 DASSLSEAIKKYV------DFIRTPTLDKDLH---------EGPKCPKALGDLVESCMGA 1336

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            I LD G  L+  W +   I+   +    + +  +PIREL EL
Sbjct: 1337 ILLDKGFDLNHAWNIMLSILDRIMSFSDLQL--NPIRELQEL 1376



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H G   +RLE +GD+ L Y IT +LY  YP +  G+++ LRS  V+N +   + 
Sbjct: 1221 HPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVA 1280

Query: 830  KQKVFGESMI 839
              +   E +I
Sbjct: 1281 VSRSLHEFLI 1290



 Score = 47.8 bits (112), Expect = 0.039,   Method: Compositional matrix adjust.
 Identities = 105/481 (21%), Positives = 196/481 (40%), Gaps = 61/481 (12%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I ++++YC++L  D +    P         DDS    C I LP ++P+ + V+  +   
Sbjct: 576  SISLLHQYCSKLLHDEYFNPKPEFYYF----DDSGGTVCQINLPSSAPIHQIVSTPQSSM 631

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
            +  A + A ++A + L+ L  L++ L+P      N +E    V   +   E   D   R 
Sbjct: 632  EA-AKKDACLKAIQDLHVLGALNDYLLPDQG---NAHEELMLVSSDSDSCE---DEDSRE 684

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ--NKRGRKIHPPENSPQGLAI 181
            + +   + +   +   ++   C L +  +K T PIP+++   K G  +  P  +     +
Sbjct: 685  ELHEMLVPAALKDSWSNLEHIC-LNSYYIKFT-PIPEDRIYRKFGLFVKAPLPAEAERMV 742

Query: 182  LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNT---LIFMDYLF-TKVLKL 237
            L                 G  E      D+N +L   N       +I    +F T+++ L
Sbjct: 743  LDLHLSHGRSVMTELVPSGVTE-----FDENEILQAHNFQEMYLQVILNRSIFETEIVHL 797

Query: 238  KKYLMLFDPNCSENSYFIVPTVSDS--EQIVIDWKFM-----TLISEHHNDVIQDIP--- 287
             K    F  + S   Y ++P + +     I +DW+ +     + I  +  D +  +P   
Sbjct: 798  GK--SDFCKSSSSTFYLLLPVILNECENMITVDWQIIRRCLSSPIFRNPADRVDKLPPLN 855

Query: 288  -EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEE 346
                  + V+ ES   +++V   Y+  F    F+V+ I    +  S +   ++      E
Sbjct: 856  DHLRLADGVYRESDVINSLVYAPYKKAF----FFVSRISAGRNGYSPYKDSSHL-----E 906

Query: 347  YYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKK 406
            Y    +G+ ++  +QPLL       RL  L     NRK  + ++ S E      +     
Sbjct: 907  YTWKTFGIHLEFPKQPLLSAK----RLFSLRNLLHNRK--HGSSESHELEEHFMD----- 955

Query: 407  QLLVPELCL--IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEK 464
              + PELC   I  F   +      LPSI++RL  LL+A E++  +++    G  I   +
Sbjct: 956  --IPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELKNMLSASFPEGAEITAHR 1013

Query: 465  V 465
            V
Sbjct: 1014 V 1014


>gi|296084589|emb|CBI25610.3| unnamed protein product [Vitis vinifera]
          Length = 1623

 Score =  177 bits (449), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 131/402 (32%), Positives = 193/402 (48%), Gaps = 63/402 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+   L+  Y  + EG+L+  RS  V+N NLFKL  ++     + 
Sbjct: 1029 SLERLEVLGDAFLKFAVGRRLFLLYDALDEGELTRRRSNVVNNSNLFKLAVRRNLQVYIR 1088

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F+P   +   G+  P+  E    E    +    C   P           E+   KC 
Sbjct: 1089 DQSFDP-GQFFALGHRCPRICEKE-TEMAIHS---RCGKTPTT---------EVRCSKC- 1133

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                                 H +  K+IAD VEAL+GA++++ G + A +F+ W+G++V
Sbjct: 1134 --------------------HHWLHKKTIADVVEALVGAFIVDSGFKAATVFLKWIGIQV 1173

Query: 960  ------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                  +       + ++           E+ + + F  K  LLQA+ H SY  +    C
Sbjct: 1174 DFEAFQVINACISSTSYMQLASSTDVPALEKLLGHEFLHKGLLLQAIVHPSYNKHG-GGC 1232

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGDA+LDYLIT +LY       PG +TDLRS  VNN  FA++AV    H F   
Sbjct: 1233 YQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVAVSRSLHEFLIC 1292

Query: 1074 LSPGLHEVIQRFVKMQAENDF----TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
             +  L E I+++V      DF    TL+++ +         E  + PKALGDL ES  GA
Sbjct: 1293 DASSLSEAIKKYV------DFIRTPTLDKDLH---------EGPKCPKALGDLVESCMGA 1337

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            I LD G  L+  W +   I+   +    + +  +PIREL EL
Sbjct: 1338 ILLDKGFDLNHAWNIMLSILDRIMSFSDLQL--NPIRELQEL 1377



 Score = 50.4 bits (119), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 37/70 (52%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H G   +RLE +GD+ L Y IT +LY  YP +  G+++ LRS  V+N +   + 
Sbjct: 1222 HPSYNKHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQMTDLRSLSVNNKSFANVA 1281

Query: 830  KQKVFGESMI 839
              +   E +I
Sbjct: 1282 VSRSLHEFLI 1291



 Score = 48.9 bits (115), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 106/481 (22%), Positives = 197/481 (40%), Gaps = 60/481 (12%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            +I ++++YC++L  D +    P         DDS    C I LP ++P+ + V+  +   
Sbjct: 576  SISLLHQYCSKLLHDEYFNPKPEFYYF----DDSGGTVCQINLPSSAPIHQIVSTPQSSM 631

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
            +  A + A ++A + L+ L  L++ L+P      N +E    V   +   E   DS  R 
Sbjct: 632  EA-AKKDACLKAIQDLHVLGALNDYLLPDQG---NAHEELMLVSSDSDSCEADEDS--RE 685

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ--NKRGRKIHPPENSPQGLAI 181
            + +   + +   +   ++   C L +  +K T PIP+++   K G  +  P  +     +
Sbjct: 686  ELHEMLVPAALKDSWSNLEHIC-LNSYYIKFT-PIPEDRIYRKFGLFVKAPLPAEAERMV 743

Query: 182  LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNT---LIFMDYLF-TKVLKL 237
            L                 G  E      D+N +L   N       +I    +F T+++ L
Sbjct: 744  LDLHLSHGRSVMTELVPSGVTE-----FDENEILQAHNFQEMYLQVILNRSIFETEIVHL 798

Query: 238  KKYLMLFDPNCSENSYFIVPTVSDS--EQIVIDWKFM-----TLISEHHNDVIQDIP--- 287
             K    F  + S   Y ++P + +     I +DW+ +     + I  +  D +  +P   
Sbjct: 799  GK--SDFCKSSSSTFYLLLPVILNECENMITVDWQIIRRCLSSPIFRNPADRVDKLPPLN 856

Query: 288  -EKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEE 346
                  + V+ ES   +++V   Y+  F    F+V+ I    +  S +   ++      E
Sbjct: 857  DHLRLADGVYRESDVINSLVYAPYKKAF----FFVSRISAGRNGYSPYKDSSHL-----E 907

Query: 347  YYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKK 406
            Y    +G+ ++  +QPLL       RL  L     NRK  + ++ S E      +     
Sbjct: 908  YTWKTFGIHLEFPKQPLLSAK----RLFSLRNLLHNRK--HGSSESHELEEHFMD----- 956

Query: 407  QLLVPELCL--IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEK 464
              + PELC   I  F   +      LPSI++RL  LL+A E++  +++    G  I   +
Sbjct: 957  --IPPELCHLKIIGFSKDIGSSVSLLPSIMHRLENLLVAIELKNMLSASFPEGAEITAHR 1014

Query: 465  V 465
            V
Sbjct: 1015 V 1015


>gi|294884861|gb|ADF47441.1| dicer1-like protein, partial [Dugesia japonica]
          Length = 273

 Score =  176 bits (447), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 86/195 (44%), Positives = 129/195 (66%), Gaps = 6/195 (3%)

Query: 267 IDWKFMTLISEHHNDV--IQDIPEKEREN--FVFDESKFRDAVVMPWYRNQFEPTYFYVA 322
           +DW+F+ L+ + +N V  +  +  + + N  F F+E  +++AVVMP YRN     Y+YVA
Sbjct: 14  VDWEFIDLVIKSYNTVENVCRLETRRKPNGMFDFNELDYQNAVVMPSYRNFDHRQYYYVA 73

Query: 323 EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVN 382
           +I  ++ P + FP     + TF EYY+ KYG +I N +QPLLD D +  RLN   PR+VN
Sbjct: 74  DICWDMRPTTDFPGEH--FATFAEYYTKKYGAKITNYQQPLLDADFSVMRLNLTIPRHVN 131

Query: 383 RKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLL 442
            KG+ L   S   ++  RES  +KQ L+PELC IHPFPA+ W K+ S+P+I++R+N LLL
Sbjct: 132 FKGVPLPVPSAAKKKFFRESNSQKQFLIPELCFIHPFPATFWHKAASMPTIMHRVNQLLL 191

Query: 443 ADEIRTAVASEIGLG 457
           A+E+R+ +A ++GLG
Sbjct: 192 AEELRSQIAYDVGLG 206


>gi|397529815|gb|AFO53518.1| dicer-like protein 4 [Solanum lycopersicum]
          Length = 1620

 Score =  174 bits (440), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 135/404 (33%), Positives = 188/404 (46%), Gaps = 56/404 (13%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            H   S +RLE +GD+FLK+A+   L+  +    EG+L+  RS  V+N NL+ +  +K   
Sbjct: 1015 HESFSLERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRSNAVNNSNLYMVAIKKNLQ 1074

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
              +    FEP D++   G   P                 N  +  N+  L      + IK
Sbjct: 1075 AYIRDQSFEP-DHFYVVGRPCP--------------VTCNKQTEKNIHGLCGSGT-DGIK 1118

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                ++ C+                H +  K+IAD VEAL+GA++++ G + A+ F+ W+
Sbjct: 1119 ---TEVRCSK-------------YHHWLRKKTIADIVEALVGAFVVDSGFKAAIAFLKWI 1162

Query: 956  GLKVIPPVTNPESKHLSDV------LLDGFD--KFEESINYRFKDKSYLLQAMTHASYFL 1007
            G+        P+ K +         L D  D    E  + Y F  K  L+QA  H SY  
Sbjct: 1163 GIHT--DFKEPQLKSICSASKVFMPLADEIDVLGIERLLGYSFIHKGLLIQAFIHPSYNR 1220

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
            +    CYQRLEFLGDA+LDYLIT +LY       PG LTDLRS  VNN  FA +AVR  F
Sbjct: 1221 HG-GGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSISVNNNTFAVVAVRQSF 1279

Query: 1068 HHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            H      S  L E I R+V      D T               +   VPKALGDL ES  
Sbjct: 1280 HSHILCDSSDLRESITRYVNFIGRPDSTRGW-----------VKSHLVPKALGDLVESCM 1328

Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            GAI LD+G  L+  W++    +K  +    + +  +P REL EL
Sbjct: 1329 GAILLDTGFDLNRAWQIILSFLKPVMSFTRLQL--NPTRELYEL 1370



 Score = 50.8 bits (120), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 25/79 (31%), Positives = 41/79 (51%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H G   +RLE +GD+ L Y IT +LY  YP +  G+L+ LRS  V+N     + 
Sbjct: 1215 HPSYNRHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSISVNNNTFAVVA 1274

Query: 830  KQKVFGESMIATKFEPRDN 848
             ++ F   ++    + R++
Sbjct: 1275 VRQSFHSHILCDSSDLRES 1293



 Score = 47.0 bits (110), Expect = 0.075,   Method: Compositional matrix adjust.
 Identities = 45/161 (27%), Positives = 67/161 (41%), Gaps = 31/161 (19%)

Query: 995  YLLQAMT----HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            ++L+A+T    H S+ L       +RLE LGDA L + + RHL+    A   G LT  RS
Sbjct: 1004 HVLEALTTENCHESFSL-------ERLEVLGDAFLKFAVGRHLFLLHDAFDEGQLTRKRS 1056

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLS--PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
              VNN     +A++     + +  S  P    V+ R   +        N     + G C 
Sbjct: 1057 NAVNNSNLYMVAIKKNLQAYIRDQSFEPDHFYVVGRPCPVTCNKQTEKN-----IHGLCG 1111

Query: 1109 EAED---IEV----------PKALGDLFESVAGAIYLDSGM 1136
               D    EV           K + D+ E++ GA  +DSG 
Sbjct: 1112 SGTDGIKTEVRCSKYHHWLRKKTIADIVEALVGAFVVDSGF 1152


>gi|157285013|gb|ABV31246.1| dicer-like 4 [Physcomitrella patens]
          Length = 1445

 Score =  172 bits (437), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 147/462 (31%), Positives = 221/462 (47%), Gaps = 94/462 (20%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GD+FL+ +++  L+  +  + EG+LS  R+  + N  L +LG+++           
Sbjct: 1032 LELLGDAFLEVSVSERLFLLHNRLDEGELSKRRTNLICNKMLERLGRERGIM-------- 1083

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
                N++    F PK   T                        P +V E           
Sbjct: 1084 ----NYIRDTQFSPKEWAT------------------------PGRVRE----------- 1104

Query: 904  TVDMNVQSVVPYNLVTQHSIP---DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV- 959
                           TQ  +P    K+IAD  EALIGA+ I  G   A   M WLG +V 
Sbjct: 1105 ---------------TQCKLPPLQGKTIADVFEALIGAHYIHGGVEAAQAMMGWLGCEVG 1149

Query: 960  IPPVTNPESK---HLSDVLLD--GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            +      E++   H    LL      + E  +NY+F++K  L++A+THAS   ++  DCY
Sbjct: 1150 VSSSIREEARTRVHGQLELLSEAKVSELEILLNYKFQNKGLLVEALTHASCRRHS-GDCY 1208

Query: 1015 QRLEFLGDAILDYLITRHLYEDER--AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            QRL FLGDA+LD+LIT+H Y +       PG LTDLRSA VNN  FA +AVR   H +  
Sbjct: 1209 QRLGFLGDAVLDFLITKHFYANSANLKRDPGLLTDLRSAAVNNECFARVAVRHNLHLYLL 1268

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG-ECDEAEDIEVPKALGDLFESVAGAIY 1131
            H S  L   + ++V     +   L++ + L +   C   +       L DL ES+AGA++
Sbjct: 1269 HNSSDLAARVDKYVHGSTTDVCALSEAFLLSKHLSCSSMQ------VLSDLVESLAGAVF 1322

Query: 1132 LDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKP------EKLA 1185
            LDSG  LDTVW V+ +++K  +   ++ +   PIREL EL  +  +F +P      E + 
Sbjct: 1323 LDSGYKLDTVWNVFKQLLKPLVTPATLRL--EPIRELWEL-CQTEKFGEPNYKKKREAMG 1379

Query: 1186 DGRRVRVTVEVFGKGSYKGIGR--NYCIAKCTAAKCALKHLK 1225
            D   + VTVE+  + +  G+GR  +   A+  AA  AL+ LK
Sbjct: 1380 D-FDMTVTVELKDE-TITGVGRKPDEKSARKVAAIQALETLK 1419



 Score = 60.5 bits (145), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 105/483 (21%), Positives = 204/483 (42%), Gaps = 87/483 (18%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            ++ ++++YCARL  D F    P  + SE    D     C+I+LP ++ L +SV G  + +
Sbjct: 574  SVSLLHQYCARLAHDSFYTPTPQFSYSE----DGSGVKCTIKLPTDA-LVQSVEGRPVSS 628

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
            +  A R+A + AC  LY+   L   L+  +KE  N Y + + + P++       +ST  R
Sbjct: 629  QADAKRVACLIACERLYDAGALTELLLLKSKE--NAY-SLDAIAPES-------NSTTGR 678

Query: 124  QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDE-QNKRGRKIHPPENSPQGLAIL 182
                 R                         +  +PD      G  ++  E     ++ +
Sbjct: 679  DPLPSR-------------------------SIIVPDAFSGTWGSGLNSVELHAYAISFV 713

Query: 183  TTKYIPKVCSFPIFT------RCGEVEVSIELIDKNVVLSEENLSNTLIF---------- 226
             T       +F +F         G +EV ++L ++ +V ++ +   T++F          
Sbjct: 714  ATPNDRAYVNFGLFLEADMGPEAGSIEVELQLSNRRLVNAKCSPCGTILFEPDQSTNAKS 773

Query: 227  MDYLFTKVLKLKKYLMLFDPNCSENS---YFIVPT--VSDSEQIVIDWKFMT-LISE--H 278
               +F+ VL  K  +   + +   NS   Y ++P     D+  + IDW  +  LIS+   
Sbjct: 774  SRAIFSSVLDQKPPVPNIELSGEWNSNRLYLLLPLKEKQDALPLSIDWDCIEDLISDVMK 833

Query: 279  HNDVIQDIP-EKERENFV------FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPR 331
              + ++++P E  R + +      F      ++++   +  +     +   E++ +++ +
Sbjct: 834  GYNTLEEVPSEIPRSSLLRLIDGYFPVEHVTNSLIQTEHTGK--RCLYCARELIPDMNGQ 891

Query: 332  SMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATT 391
            S    + + Y ++ +YY  K+   +  +EQP+L         N LT R          TT
Sbjct: 892  SPMIMKVSKYNSYSDYYLKKHNRTLNFVEQPMLKAKPLIQVNNLLTQR----------TT 941

Query: 392  SEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEIRTA 449
            SE    E +++    +L + ELC  ++     +L      LPS ++RL  LLLA + R +
Sbjct: 942  SERPAAEEQKTESLVELPL-ELCKIMVKGLSCALTNGISLLPSFMHRLEGLLLAVQFRKS 1000

Query: 450  VAS 452
            + S
Sbjct: 1001 LPS 1003


>gi|391345092|ref|XP_003746827.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1446

 Score =  172 bits (435), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 145/505 (28%), Positives = 226/505 (44%), Gaps = 109/505 (21%)

Query: 763  SDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTY 804
            S     F  ++EN  GPSP                  +R E +GDSFLK A+T+ L+   
Sbjct: 988  SSSELKFIKEVENSPGPSPADILTALTPSSAQDVVNSERFEVLGDSFLKIAVTLHLFPRE 1047

Query: 805  PNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETAL 864
                EG L+  R + +SN NL KL                           VPK +  A+
Sbjct: 1048 DLPDEGTLTAERCRLISNMNLLKLA--------------------------VPKKIHEAV 1081

Query: 865  IEAGFPASLWNCLSLPNLKELSPEKV-LEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSI 923
                F A       +P +      K+ L++ K K                          
Sbjct: 1082 ESRIFSAR--ESFRVPGMISREGNKLQLQVYKSKIC------------------------ 1115

Query: 924  PDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP---------------PVTNPES 968
                 AD VEA+IG YL   GP GAL F+ +LGL +                 PV     
Sbjct: 1116 -----ADSVEAMIGVYLERSGPIGALEFLRYLGLSLSDSDSGSFLSRFDLSYDPVVGGNH 1170

Query: 969  KHLS-----DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDA 1023
             ++S     DV+     + E  + YRFK++ YLL+A+TH SY  N +T  Y+RLEFLGDA
Sbjct: 1171 DYISIRRHNDVM----SRVESILGYRFKNRLYLLEAITHQSYN-NRVTHSYERLEFLGDA 1225

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            ++DYL++  ++ ++    PG LT +RSALV N  FA +  + G      H SP L  ++ 
Sbjct: 1226 VIDYLVSCFIFTNDPHLGPGQLTSVRSALVCNNQFAQIVTKAGLSRCLLHRSPLLFRMMT 1285

Query: 1084 RFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
             + +     +     + ++ + E ++A+ ++ PK  GDL ES+ GA+++DS       W 
Sbjct: 1286 SYTEAV---EIGRPCDSFIGDDETEDADLVDAPKPFGDLMESLIGAVFIDSNQDFSRTWD 1342

Query: 1144 VYYEIMKSEI--ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGS 1201
            V+  +M   +  E L  + P++PI  L E+ P    +SK   + + +R+ +T+ V G+ +
Sbjct: 1343 VFRGLMGDRVLLETLKDN-PRNPIAVLEEMFPSGCEYSKA-IIREDKRIEMTLTVAGR-N 1399

Query: 1202 YKGIGRNYCIAKCTAAKCALKHLKS 1226
            +  + R   IAK   AK AL+   +
Sbjct: 1400 FSAVSRKKKIAKLLLAKIALRAFST 1424



 Score = 57.8 bits (138), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 177/474 (37%), Gaps = 85/474 (17%)

Query: 7   IVNRYCARLPSDIFTRLAPIITISE--IKEDDSIMFTCSIRLPINSPL-KRSVTGHKMPT 63
           ++  YC  L +D F  + P+I+      K  + +   CSI LP  S L    V G  +P+
Sbjct: 574 VLQWYCDTLGNDRFQVMRPLISYHSRPSKNQNEVESRCSILLPKASKLYPEEVYGKWLPS 633

Query: 64  KLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRR 123
           K  +   AA+  C+ LYEL EL  +L+P  +    +Y  T+  V  + E+++       +
Sbjct: 634 KPKSRVSAALATCKRLYELDELTENLVPRKRPKPGVYTWTDDQV--SDEVKSLFGGHTIQ 691

Query: 124 QFYHKRMASCFTNCRPSVNTP-----CYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ- 177
           Q    +     +    S   P       +Y  + +L  P+ D+ +   R   P E +   
Sbjct: 692 QKSSIKCERAMSRELDSGKLPPLPAGASIYVFRNRLEIPLNDDHSHM-RTFRPEEEALCF 750

Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
           GL    +     +  FPIFTR G   V I+ I  +V ++ E       F  YL  +V +L
Sbjct: 751 GLLTFASGCAFSLPDFPIFTRNGREIVRIDTI-VDVTVTRELWELCTKFHAYLLKRVCRL 809

Query: 238 KKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFD 297
             +       C  +S    P     +   ID            D+++ I  +E++ F   
Sbjct: 810 SNF------ECDSDS---APAFVPVKHETIDI-----------DLLRSIAFEEKQMFSI- 848

Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
                +AVV      + E   ++V EI+     R                          
Sbjct: 849 -----NAVVSRKRTEESEVCSYFVREILNTEEGRK------------------------- 878

Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVP-ELCLI 416
                 L ++     L+F    Y  +      T+ EE          +    VP E   +
Sbjct: 879 ------LTLEGIPKNLDFCRDVYKVKTKFKEQTSDEE----------RALWAVPLEFFEV 922

Query: 417 HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPF 470
               A  W K+ ++ +  +RLN LL+A+  R  +  E G+G    +    WPP 
Sbjct: 923 EFLSAPQWSKARTILTCTHRLNRLLIAEHYRQKIV-ETGIG---YNPSQRWPPM 972


>gi|379987682|gb|AFD22621.1| dicer-like 4 protein [Nicotiana attenuata]
          Length = 1622

 Score =  171 bits (433), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/403 (33%), Positives = 187/403 (46%), Gaps = 62/403 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GD+FLK+A+   ++ TY    EG+L+  RS  V+N  L+ +  +    ++ I
Sbjct: 1022 SLERLEVLGDAFLKFAVGRHVFLTYNAFDEGQLTRRRSNIVNNSYLYTIAVRNNL-QAFI 1080

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
                  RD    P +F            G P         P +     EK    I  +C 
Sbjct: 1081 ------RDQSFDPYHFYA---------VGRPC--------PVICNKQTEKS---IHGQCG 1114

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
             +       V+    +  + +     K+IAD VEAL+GA++++ G + A+ F+ W+G+  
Sbjct: 1115 SVTDGAKTEVRCSKCHQWLRK-----KTIADIVEALVGAFVVDSGFKAAIAFLKWIGI-- 1167

Query: 960  IPPVTNPESKHLSDV---------LLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLN 1008
                T+ E   +  +         L D  D    E  + Y F  K  L+QA  H SY  N
Sbjct: 1168 ---YTDFEESQVKSICAASKVFMPLADEIDIQAIENLLGYTFVHKGLLIQAFIHPSYN-N 1223

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CYQRLEFLGDA+LDYLIT +LY       PG LTDLRS  VNN  FA +AV   FH
Sbjct: 1224 HGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSVSVNNTTFAVVAVHQSFH 1283

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
                  S GL E I R+V      D                +E+   PKALGDL ES  G
Sbjct: 1284 SHILCDSSGLRESITRYVNFIGRPDSMKRL-----------SEEPSCPKALGDLVESCMG 1332

Query: 1129 AIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AI LD+G  L+  W++    +K  +    + +  +P REL EL
Sbjct: 1333 AILLDTGFDLNXAWRIMLSFLKPVMSFTRLQL--NPKRELHEL 1373



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 25/70 (35%), Positives = 37/70 (52%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P   NH G   +RLE +GD+ L Y IT +LY  YP +  G+L+ LRS  V+N     + 
Sbjct: 1218 HPSYNNHGGGCYQRLEFLGDAVLDYLITSYLYSVYPKLKPGQLTDLRSVSVNNTTFAVVA 1277

Query: 830  KQKVFGESMI 839
              + F   ++
Sbjct: 1278 VHQSFHSHIL 1287



 Score = 49.3 bits (116), Expect = 0.014,   Method: Compositional matrix adjust.
 Identities = 96/477 (20%), Positives = 190/477 (39%), Gaps = 63/477 (13%)

Query: 9    NRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAW 68
            + YC++LP D F    P         DD     C + LP N+P+ + V+  +   +  A 
Sbjct: 578  HHYCSKLPRDEFFCPKPQF----FYFDDIDGTICKLVLPSNAPMHQIVSAPQSSIEA-AK 632

Query: 69   RIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFY 126
            + A + AC+ L+EL  L + L+P    ++ I+++   +  +          D   R + +
Sbjct: 633  KDACLRACKSLHELGALTDYLLPDQADEDLIHVFLTQKAQM----------DEDAREELH 682

Query: 127  HKRMASCFTNCRPSVNTPCYLYAVKMKLT-CPIPDEQNKRGRKIHPPENSPQGLAILTTK 185
               + + F        +P  L +  +  + CPI     K G  +  P   PQ    +   
Sbjct: 683  EMIVPAAFKESWTETESPVCLNSYYINFSPCPIDRVYKKFGLFLKAP--LPQEAERMKLD 740

Query: 186  YIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL-----KLKKY 240
                        R   VE   ELI       E N          +F K++      + ++
Sbjct: 741  LN--------LARGRSVET--ELIPSGATNFENNEVQLAEKFQRMFLKIILDRSEXISEF 790

Query: 241  LMLFDPN---CSENSYFIVPT-VSDSEQIVIDWKFM--TLISEHHNDVI----QDIPEKE 290
            + L   +    +  SY ++P  +    +I +DW+ +   L S      +     +I + +
Sbjct: 791  VSLEKEDYVDSASKSYLLLPVNLCGHNKISVDWELVRRCLSSPIFGTKVYAGNSEISKFD 850

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSL 350
             +  + + SK    V         + T+F++++++   +  S++    N      E+Y  
Sbjct: 851  EQLQLANGSKSVHDVANSLVYVPCKETFFFISDVVKESNAYSIYKDSKNHV----EHYYD 906

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
             +G+++   EQPL+      C  N L      +KG +     EE   E+   + + +++ 
Sbjct: 907  TFGIRLSYPEQPLIKAKQLFCLDNLL-----RKKGYSELRDKEEHFVELPAEICQLKII- 960

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK-VILDEKVE 466
                    F   +      LPSI++RL +LL+A E++  +++    G+ V +D  +E
Sbjct: 961  -------GFSKDIGSSLSLLPSIMHRLESLLVAIELKGCLSASFPEGREVTIDHVLE 1010


>gi|426204654|gb|AFY13245.1| dicer-2, partial [Schistocerca gregaria]
          Length = 357

 Score =  170 bits (431), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 154/269 (57%), Gaps = 31/269 (11%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLK+A+++FL+  Y + HEG LS ++ K VSN++ + + K K  G  +   +F
Sbjct: 102  LETLGDSFLKFAVSLFLFIHYKSHHEGTLSSIKMKVVSNWHFYNVAKGKDIGSKLQIHRF 161

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
             P + W+PPG+ VP+ +    +                LK+L+P ++   + Q  VD+  
Sbjct: 162  VPDETWVPPGFTVPQPVRRKFLSEHIAPEY--------LKKLNPSEIEHSMDQ-LVDMRN 212

Query: 904  TVDMNVQSVVPYN---LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL--- 957
            T ++     +P N    +   ++ DKS+AD +EAL G YL   G  GA+  ++ LG+   
Sbjct: 213  TWNL----AMPNNSELFIGVQTVSDKSLADALEALTGVYLKAYGLSGAIALLNSLGVLPA 268

Query: 958  -KVIP----------PVTNPESKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
             K  P          P+     +H   D  L   ++ EE++NYRFKD+ +LLQA+TH S+
Sbjct: 269  KKASPHILFERPPERPLLQESLRHQYLDFHLGDTEELEETLNYRFKDRGFLLQALTHPSW 328

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
              N +TDCYQRLEFLGDAILD+L+T ++Y
Sbjct: 329  SDNRITDCYQRLEFLGDAILDFLVTSYIY 357


>gi|302772092|ref|XP_002969464.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
 gi|300162940|gb|EFJ29552.1| hypothetical protein SELMODRAFT_91347 [Selaginella moellendorffii]
          Length = 1255

 Score =  167 bits (422), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 190/414 (45%), Gaps = 57/414 (13%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            +  L    G S + LE +GDS LKYA+T  LY  +  +HEG+LS  RS  + N  L KL 
Sbjct: 819  RTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLA 878

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL--KELS- 886
              +     +    F P   W+  G +  +             S   C  L NL  KE S 
Sbjct: 879  VAQDLPMYVRDEPFYP-SYWVGAGMYRQR-------------SRKCCCRLDNLVTKESSK 924

Query: 887  --PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG 944
              P      + + C                        +  K+ +D +EALIGAY +  G
Sbjct: 925  PRPTDATYYVGKTCGQ------------------GHRWMCSKTTSDALEALIGAYTVGGG 966

Query: 945  PRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFD-------KFEESINYRFKDKSYLL 997
              GAL FM  L + V        +     V LD            E+ + Y F++K+ LL
Sbjct: 967  FDGALEFMKALQVDVDFDSGLIAASQHRPVPLDAVQFHMPALLSLEKELCYTFQNKALLL 1026

Query: 998  QAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057
            +A+THAS        CYQRLEF+GDA+LD+L+TRHL+      SPG L+DLRSA VNN  
Sbjct: 1027 EAITHASTPDTVF--CYQRLEFIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDC 1084

Query: 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117
             A +AV+   H + +H S  L   I  F+ +        + E  +M G     + +  PK
Sbjct: 1085 LARVAVKHRLHSYLRHGSAELRAKINSFLDV-----LDRDPECSVMFG----FKALSGPK 1135

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AL D+ ESVAGAI +DSG   + +W V   ++   +   ++S    P+RE  EL
Sbjct: 1136 ALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSF--HPVREFHEL 1187



 Score = 60.5 bits (145), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 33/94 (35%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D A+  + RYC++LP D +    P I +++ + D+  +F+C+I  P N+PL   +TG   
Sbjct: 446 DGAVSFIYRYCSQLPGDRYYNPKPEIEVTKCESDNEELFSCTITFPPNAPL-HVLTGPPK 504

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
             K LA ++A +EACR L  L  L     P  +E
Sbjct: 505 RNKQLAKKVACLEACRQLDALGALGERHPPEVRE 538


>gi|302755618|ref|XP_002961233.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
 gi|300172172|gb|EFJ38772.1| hypothetical protein SELMODRAFT_74321 [Selaginella moellendorffii]
          Length = 1291

 Score =  166 bits (421), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 135/414 (32%), Positives = 190/414 (45%), Gaps = 57/414 (13%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            +  L    G S + LE +GDS LKYA+T  LY  +  +HEG+LS  RS  + N  L KL 
Sbjct: 855  RTSLRCQDGFSYEGLELLGDSVLKYAVTRKLYLLHSTMHEGELSDRRSHAICNSTLRKLA 914

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL--KELS- 886
              +     +    F P   W+  G +  +             S   C  L NL  KE S 
Sbjct: 915  VAQDLPMYVRDEPFYP-SCWVGAGMYRQR-------------SRKCCCRLDNLVTKESSK 960

Query: 887  --PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG 944
              P      + + C                        +  K+ +D +EALIGAY +  G
Sbjct: 961  PRPTDATYYVGKTCGQ------------------GHRWMCSKTTSDALEALIGAYAVGGG 1002

Query: 945  PRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFD-------KFEESINYRFKDKSYLL 997
              GAL FM  L + V        +     V LD            E+ + Y F++K+ LL
Sbjct: 1003 FDGALEFMKALQVDVDFDSGLIAASQHRPVPLDAVQFHMPALLSLEKELCYTFQNKALLL 1062

Query: 998  QAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057
            +A+THAS        CYQRLEF+GDA+LD+L+TRHL+      SPG L+DLRSA VNN  
Sbjct: 1063 EAITHASTPDTVF--CYQRLEFIGDAVLDFLVTRHLFTSHPGLSPGLLSDLRSASVNNDC 1120

Query: 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117
             A +AV+   H + +H S  L   I  F+ +        + E  +M G     + +  PK
Sbjct: 1121 LARVAVKHRLHSYLRHGSAELRAKITSFLDV-----LDRDPECSVMFG----FKALSGPK 1171

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
            AL D+ ESVAGAI +DSG   + +W V   ++   +   ++S    P+RE  EL
Sbjct: 1172 ALADIVESVAGAILVDSGFDFEKLWVVLKRLLSPFVTPATLSF--HPVREFHEL 1223



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 34/94 (36%), Positives = 52/94 (55%), Gaps = 1/94 (1%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           D A+  + RYC++LP D F    P I +++ + D+  +F+C+I  P N+PL   +TG   
Sbjct: 482 DGAVSFIYRYCSQLPGDRFYNPKPEIEVTKCESDNEELFSCTITFPPNAPL-HVLTGLPK 540

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
             K LA ++A +EACR L  L  L     P  +E
Sbjct: 541 RNKQLAKKVACLEACRQLDALGALGERHPPEVRE 574


>gi|379987678|gb|AFD22619.1| dicer-like 2 protein [Nicotiana attenuata]
          Length = 1403

 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 118/316 (37%), Positives = 161/316 (50%), Gaps = 26/316 (8%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKH--LSDVLLD 977
            +  I  K +AD VEALIGA+L   G   AL FM WLG+  I  V  P  +H  ++   L 
Sbjct: 1098 RQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGVD-IDFVDAPTPRHFPMNAEKLV 1156

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
                 E  ++Y+F D S L++A+TH SY L  +  CYQRLEFLGDA+LDY +T HLY   
Sbjct: 1157 NVRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVTAHLYFKY 1216

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE----VIQRFVKMQAEND 1093
               SPG +TDLRSA VNN  +A  AV+ G H    H S  L       +  F K+   + 
Sbjct: 1217 PGLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQIVNTVLNFEKLDPAST 1276

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
            F    E                PK LGD+ ES+AGAI++DSG + D V++    +++  I
Sbjct: 1277 FGWESE-------------TTFPKVLGDVIESLAGAIFVDSGFNKDVVFQSVRTLLEPLI 1323

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVR-VTVEVFGKG---SYKGIGRNY 1209
               +V +   P+REL EL  +     K   ++    V  +TVEV   G    +    R+ 
Sbjct: 1324 TPDTVKL--HPVRELSELCDQKGYIKKKNVVSRENGVAYITVEVEADGVSHKFTCSERDK 1381

Query: 1210 CIAKCTAAKCALKHLK 1225
             +A+  A K  LK LK
Sbjct: 1382 KMAEKVACKNVLKLLK 1397



 Score = 55.1 bits (131), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 100/481 (20%), Positives = 192/481 (39%), Gaps = 101/481 (20%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           + +++ ++  YC+RLPSD + + +P   I +  E      TC++ LP N PL++ V   K
Sbjct: 556 LSSSVSLLYFYCSRLPSDGYYKPSPRCAIEKETE------TCTLYLPKNCPLQK-VISVK 608

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
             TK+L  ++A +EAC+ L+    L ++L+P   E        E  + K    + Y D  
Sbjct: 609 GNTKILK-QLACLEACKELHREGALTDNLVPDIVE--------EEAIIKELGCQIYTD-- 657

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
           +  +++   + S   +C        Y Y V ++                H   +S Q   
Sbjct: 658 EELKYFPPELVS---HCANDTEAVYYCYEVDLQ----------------HDSYSSYQLCG 698

Query: 181 ILTTKYIPKVCSFPIFTRC--GEVEVSIEL-IDKNVVLSEENLSNT--LIFMDYLFTKVL 235
           I+            + TR    +  ++ +L +DK  +L + N S    L   + L  +  
Sbjct: 699 II----------LAVRTRLKFDDERLTFDLDVDKGSLLVQVNYSGVVRLTSEEVLRCQRF 748

Query: 236 KLKKYLMLFDPNCSE----------------NSYFIVPTVSDSEQIVIDWKFMT------ 273
           ++  + +L D + S+                + Y ++P++  ++   I+W+ +       
Sbjct: 749 QVSLFRILLDRDLSKLEDALAAVQLPVGSAVSDYLLLPSLGSTQNPQINWECVNSVLFPS 808

Query: 274 -LISEHHNDVIQDIPEKERENF---VFDESKFRDAVVMPWYRNQFEPTYFY-VAEIMTNV 328
            ++ + H D       K   N    V       +++V   +       Y Y +   + N+
Sbjct: 809 QVLGDKHIDCCSTQGRKRSVNTKTGVVCSCMLENSLVCTPHNG-----YVYCITGFLDNL 863

Query: 329 HPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINL 388
              S+   RT    T+ EYY  ++ + +    + LL   H      F    Y+ R     
Sbjct: 864 DCNSLLEQRTGESITYIEYYKKRHRINLCFDGEQLLRGKHI-----FKVHNYLQRCRSQK 918

Query: 389 ATTSEETRREIRESLGKKQLLVPELC--LIHPFPASLWRKSVSLPSILYRLNALLLADEI 446
           A  S E+  E          L PELC  ++ P   S       LPS+++R+ +L++A  +
Sbjct: 919 AKDSTESSVE----------LPPELCSIIMSPVSISTLFTYSYLPSVMHRVESLIMASNL 968

Query: 447 R 447
           +
Sbjct: 969 K 969



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            +RLE +GD+ L YA+T  LY  YP +  G ++ LRS  V+N
Sbjct: 1194 QRLEFLGDAVLDYAVTAHLYFKYPGLSPGFITDLRSASVNN 1234


>gi|80979107|gb|ABB54756.1| Dicer-2 [Drosophila simulans]
          Length = 1567

 Score =  166 bits (421), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 116/357 (32%), Positives = 175/357 (49%), Gaps = 34/357 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEA-GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
             F PR  W+PP   +P  +     E  GF     N +   NL++L+ +    ++K  C D
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREKPGFA----NMIGPHNLRDLALDDEESLVKGNCSD 1320

Query: 901  LDCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
            +           N QS    +         V   +I +K IAD +EAL+G  +   G + 
Sbjct: 1321 IKYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQH 1380

Query: 948  ALLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFK 991
            A   + +  +      K +  + N E        +++   +DGF       E ++ Y FK
Sbjct: 1381 AFKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFK 1440

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D+ YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSA
Sbjct: 1441 DRRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSA 1500

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            LVNN   A + VR   H F    +  L E I +FV  Q      +    +++  E D
Sbjct: 1501 LVNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEAD 1557



 Score =  132 bits (331), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 229/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGVNAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              + ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SSVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076


>gi|167046024|gb|ABZ10543.1| dicer-like protein C [Trichoplax adhaerens]
          Length = 358

 Score =  166 bits (420), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 186/384 (48%), Gaps = 60/384 (15%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDSFLK+ I   L+ ++P  HEG+L++  +K V N NL KLGK     E +I
Sbjct: 15   SLERLEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYII 74

Query: 840  ATKFEPRDN--WLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
               F    N  W+PPGY                            K LS        K K
Sbjct: 75   GKPFNLLKNEGWIPPGY----------------------------KLLSS-------KVK 99

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL-- 955
             +D   T D++    V     T      KSIAD ++A++ A L+E   R A  F+SWL  
Sbjct: 100  NLDEKVTSDLDGDKAV-----THQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDK 154

Query: 956  ---------GLKVIPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
                        ++P   N  S  ++ +   +  ++ E+ I Y F++K ++++A+TH+SY
Sbjct: 155  DIKFTINASAASLLPDDDNISSNEINKIYETNNLERLEKVIGYSFQNKLFMIRALTHSSY 214

Query: 1006 FLNTLT-DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
              + +  +  Q+LEFLGD IL Y+I RH +       P  L D + A+VNN   A + + 
Sbjct: 215  HHHDIAIESNQKLEFLGDTILQYIIARHFFNSHPDAKPAKLHDFQEAIVNNKCLAVIGIA 274

Query: 1065 LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY-YLMEGEC---DEAEDIEVPKALG 1120
            +G   +    SP L   I +F K+    D+ ++ E  Y    E    +  E++++PK + 
Sbjct: 275  IGVSKYVFQESPDLFRDIDQFAKI-ITCDYMIDDEMNYNDRTEALFENFTEEVKIPKPVS 333

Query: 1121 DLFESVAGAIYLDSGMSLDTVWKV 1144
            D+ E++ GAIY+D+G S+  V K 
Sbjct: 334  DVVEALIGAIYIDTGESIAEVTKA 357


>gi|167046026|gb|ABZ10544.1| dicer-like protein C [Placozoa sp. DMJ-2008]
          Length = 352

 Score =  166 bits (419), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/380 (31%), Positives = 184/380 (48%), Gaps = 60/380 (15%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GDSFLK+ I   L+ ++P  HEG+L++  +K V N NL KLGK     E +I   F
Sbjct: 13   LEFLGDSFLKFIIAANLFISHPKYHEGQLTNELTKIVRNDNLLKLGKSTPICEYIIGKPF 72

Query: 844  EPRDN--WLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                N  W+PPGY                            K LS        K K +D 
Sbjct: 73   NLLKNEGWIPPGY----------------------------KLLSS-------KVKNLDE 97

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL------ 955
              T D++    V     T      KSIAD ++A++ A L+E   R A  F+SWL      
Sbjct: 98   KVTSDLDGDKAV-----THQKFSSKSIADVMKAILAAILLEFDERHAKYFISWLDKDIKF 152

Query: 956  -----GLKVIPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFL-N 1008
                    ++P   +  S  ++++   +  ++ E+ I Y F++K ++++A+TH+SY   N
Sbjct: 153  TINASAASLLPDDDDISSNEINEIYEANNLERLEKVIGYSFQNKLFMIRALTHSSYHHHN 212

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
               +  Q+LEFLGD IL Y+I RH +       P  L D + A+VNN   A + + +G  
Sbjct: 213  IAIESNQKLEFLGDTILQYIIARHFFNSHPDAKPAKLHDFQEAIVNNKCLADIGIAIGVS 272

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY-YLMEGEC---DEAEDIEVPKALGDLFE 1124
             +    SP L   I +FVK+    D+ ++ E  Y    E    +  E++++PK + D+ E
Sbjct: 273  KYIFQESPDLFRDINQFVKI-ITCDYMIDDEMNYNDRTEALFENFTEEVKIPKPMSDVVE 331

Query: 1125 SVAGAIYLDSGMSLDTVWKV 1144
            ++ GAIY+D+G S+  V K 
Sbjct: 332  ALIGAIYIDTGESIAEVTKA 351


>gi|80979111|gb|ABB54758.1| Dicer-2 [Drosophila simulans]
          Length = 1564

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 173/356 (48%), Gaps = 32/356 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  W+PP   +P  +     E        N +   NL++L+ +    ++K  C D+
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREK---PEFANMIGPHNLRDLTLDDEESLVKGNCSDI 1321

Query: 902  DCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                       N QS    +         V   +I +K IAD +EAL+G  +   G + A
Sbjct: 1322 KYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQHA 1381

Query: 949  LLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKD 992
               + +  +      K +  + N E        +++   +DGF       E ++ Y FKD
Sbjct: 1382 FKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKD 1441

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
            + YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSAL
Sbjct: 1442 RRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSAL 1501

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            VNN   A + VR   H F    +  L E I +FV  Q      +    +++  E D
Sbjct: 1502 VNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEAD 1557



 Score =  132 bits (333), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 230/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
             ++ ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SNVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076


>gi|80979113|gb|ABB54759.1| Dicer-2 [Drosophila simulans]
          Length = 1565

 Score =  165 bits (417), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/356 (32%), Positives = 173/356 (48%), Gaps = 32/356 (8%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  W+PP   +P  +     E        N +   NL++L+ +    ++K  C D+
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREK---PEFANMIGPHNLRDLTLDDEESLVKGNCSDI 1321

Query: 902  DCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                       N QS    +         V   +I +K IAD +EAL+G  +   G + A
Sbjct: 1322 KYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQHA 1381

Query: 949  LLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKD 992
               + +  +      K +  + N E        +++   +DGF       E ++ Y FKD
Sbjct: 1382 FKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKD 1441

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
            + YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSAL
Sbjct: 1442 RRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSAL 1501

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            VNN   A + VR   H F    +  L E I +FV  Q      +    +++  E D
Sbjct: 1502 VNNTTLACICVRHRLHFFILAENEKLSETISKFVNFQESQGHRVTNYVHILLEEAD 1557



 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 133/545 (24%), Positives = 229/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP +   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRLGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLRTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLDLLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              + ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SSVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076


>gi|116788280|gb|ABK24820.1| unknown [Picea sitchensis]
          Length = 330

 Score =  164 bits (416), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/309 (37%), Positives = 161/309 (52%), Gaps = 17/309 (5%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFD--KFE 983
            K++AD VEALIGA L   G   AL F+ WLG+ +  P   P ++ L    +   +    E
Sbjct: 27   KNVADVVEALIGACLETGGETVALSFVKWLGMDIDIPQEMPFTRKLDTGFVSNVNVRYLE 86

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
              + Y F+  + +++++THASY   + + CYQRLEFLGDA+LDYLIT + Y+     SPG
Sbjct: 87   SLLKYSFRVHTLVVESVTHASYKEPSFSGCYQRLEFLGDAVLDYLITLYFYKTYPGLSPG 146

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LTDLRSA VNN  +A  AV+   H   +H S  LH  I  F K+ + +  + +  +   
Sbjct: 147  LLTDLRSAAVNNDCYAQAAVKCNLHQQLRHASSELHNQITEFAKLISSSSASGDHFFGWT 206

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV--SVP 1161
              E      + VPK LGDL ES+AGA+ +DS      VW      MK  +E L    ++ 
Sbjct: 207  TTE------VAVPKVLGDLIESIAGAVLVDSEFDTQLVWNA----MKPLLEPLVTPKTIK 256

Query: 1162 KSPIRELLEL-EPENARFSKPEKLADG-RRVRVTVEVFGKGSYKGI-GRNYCIAKCTAAK 1218
              P+REL EL + E       +   +G   V+V V V G    +     N   AK  AA+
Sbjct: 257  YQPVRELQELCQKEFYTCCFDDSQEEGTSTVKVEVRVKGDSYIETCEASNKRTAKKLAAE 316

Query: 1219 CALKHLKSA 1227
              LK LK+A
Sbjct: 317  KVLKSLKAA 325



 Score = 45.1 bits (105), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 20/41 (48%), Positives = 28/41 (68%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
           +RLE +GD+ L Y IT++ Y TYP +  G L+ LRS  V+N
Sbjct: 118 QRLEFLGDAVLDYLITLYFYKTYPGLSPGLLTDLRSAAVNN 158


>gi|413933740|gb|AFW68291.1| hypothetical protein ZEAMMB73_565304 [Zea mays]
          Length = 462

 Score =  164 bits (415), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 152/469 (32%), Positives = 219/469 (46%), Gaps = 93/469 (19%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSF+KY     L+  Y +  E  L+ +R ++VSN  L +L  +      + 
Sbjct: 63   SMESLETLGDSFIKYVTGQNLFNKYKH-REDMLTSMREEKVSNPALCQLACKSEIVGYIR 121

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F P+  W  PG+             G+ +   N             KV         
Sbjct: 122  GELFNPQ-KWTIPGF-------------GYDSRGNN-------------KVF-------- 146

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                T +M       Y+L  + SI  K IAD VEAL GAYL  CG   A+ F+  LG+ V
Sbjct: 147  -FRATNNM-------YSL-KKISIKSKRIADTVEALTGAYLSTCGELAAVHFIKALGMDV 197

Query: 960  -------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                   +      +S+ L D      +  +  + Y F D S L++A+TH+SY +  +T 
Sbjct: 198  ELHSKMQVERTITTKSEELIDA-----ESLQTMLKYVFYDTSLLVEALTHSSYNITGITA 252

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            C +RLEFLGDA+LDY++T + Y      +P  LT+LR A VNN  +A  AV+ G H   K
Sbjct: 253  CNERLEFLGDAVLDYILTYYFYRKYPNCTPALLTNLRKASVNNCCYAHAAVKAGLH---K 309

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H+   LH   ++ V     ND   +   +       EA  I +P+ L DLFE++AGAIY+
Sbjct: 310  HI---LHSSSKQMV-----NDLENSGRSFSGPSHGWEA-GISLPEDLADLFEAIAGAIYV 360

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERL--SVSVPKS----PIRELLELEPENARFSKP----- 1181
            DSG   + VW        S I RL   ++ P +    P+ EL EL  E+  + KP     
Sbjct: 361  DSGNDKEVVW--------SAIRRLLEPLATPGTMEPDPVSELKEL-CEHKHYPKPSYSPT 411

Query: 1182 -EKLADGRRVRVTVEVFGKGSYK--GIGRNYCIAKCTAAKCALKHLKSA 1227
             + +A   RV   V    +  Y   G GRN  +A+  AAK  LK +K+A
Sbjct: 412  RDSVAGVTRVVAQVTA-ARTVYSGTGTGRNQDVAEVLAAKALLKKIKAA 459


>gi|356518185|ref|XP_003527762.1| PREDICTED: endoribonuclease Dicer homolog 3a-like [Glycine max]
          Length = 455

 Score =  163 bits (412), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 116/319 (36%), Positives = 161/319 (50%), Gaps = 26/319 (8%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLL------DGF 979
            K+IADCVEALIGAY ++ G   +L  M WLG+ V   +++ +    +  L          
Sbjct: 126  KTIADCVEALIGAYYVDGGLFASLNVMKWLGIGVELELSSLDEAITAASLSTCVPIESDI 185

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
               E+ I Y F  K  LL+A+TH S     +  CY+RL+FLGD++LD LIT HLY+    
Sbjct: 186  ASLEKKIEYEFSVKGLLLEAITHLSEKELGIGCCYERLKFLGDSVLDLLITWHLYQSHTD 245

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
              PG L DLRSA VNN  FA +AVR   H    H S  L   I  +VK+ +E+D      
Sbjct: 246  IDPGVLADLRSASVNNDNFAQVAVRHNLHQHLLHSSGLLVSQILEYVKVISESD------ 299

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                         I  PKALGD+ ES+ G I + + +SLD VW V+Y ++   +    + 
Sbjct: 300  -------PRSLPSIRAPKALGDVVESIVGPILIGTKLSLDQVWNVFYPLLSPIVTPDKLE 352

Query: 1160 VPKSPIRELLELEPENARFSKP----EKLADGRRVRVTVEVFGKGSYK-GIGRNYCIAKC 1214
            +P  P REL EL      F K     EK+     V V+V++      + G G N   AK 
Sbjct: 353  LP--PFRELNELCDSLGHFVKVKENCEKMGSAMHVEVSVQLPNALLVREGKGPNKKTAKG 410

Query: 1215 TAAKCALKHLKSAKPADVK 1233
             AA   LK L++ K + ++
Sbjct: 411  EAAFHLLKDLENGKISAIQ 429


>gi|167046020|gb|ABZ10541.1| dicer-like protein B [Trichoplax adhaerens]
          Length = 357

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/372 (32%), Positives = 183/372 (49%), Gaps = 51/372 (13%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GDS+LKYA++I  + +Y   HEG+LS L+SK VSN NL+++G +      +I    
Sbjct: 18   LEFLGDSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQIGIKMGLPGYIIGHNV 77

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +  D W+PPG+ + K  ++  +E          LS  NL   S     + +K KC     
Sbjct: 78   DQNDIWVPPGFSIAKKSDSIGLEEQ--------LSTLNLSMTSRVHPTQKLKNKC----- 124

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW-LGLKV--- 959
                                    IAD +EAL+G  L+E G   A  F++  LG+KV   
Sbjct: 125  ------------------------IADVMEALLGGILLELGENSANNFITNNLGIKVGRL 160

Query: 960  ---IPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--- 1012
               I  + +   K +S +         E  + Y FKD+  L+ A+THA+Y  N + +   
Sbjct: 161  SHNIAKLDDDARKEISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVE 220

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGDAIL Y++ RH Y     + P  L D   A + N   A + +  G H +F 
Sbjct: 221  CYQRLEFLGDAILQYIVVRHCYHANNNYKPADLHDFVEASLQNESLAVMTMVYGIHKYFF 280

Query: 1073 HLSPGLHEVIQRFVKMQAEN---DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            + SP L   I + +++   N   +  L+ E   +       + + +PK LGDLFES+ GA
Sbjct: 281  YNSPSLFSQINQLLQIVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGA 340

Query: 1130 IYLDSGMSLDTV 1141
            I++D G S++ V
Sbjct: 341  IFIDCGRSIEVV 352


>gi|167046039|gb|ABZ10551.1| dicer 2 [Nematostella vectensis]
          Length = 1162

 Score =  162 bits (410), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 91/220 (41%), Positives = 132/220 (60%), Gaps = 13/220 (5%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYL 1028
            LS+  L      E S+ Y F+D+  LLQA+TH SY    +++   Y++LEFLGDA+LDYL
Sbjct: 927  LSEHQLGELALVEASLGYTFRDRDILLQALTHTSYPRAYSSVNSSYEQLEFLGDALLDYL 986

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            +TRH+ +     SPG +TDLRSA+VNN   A L ++  FH   + +S  L +V++RFV+ 
Sbjct: 987  VTRHVLQRFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHMRSMSMALFKVVRRFVRR 1046

Query: 1089 QA---ENDFTLNQEYYLM------EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             +   E +   +Q Y  +      +G   EA  IEVPK LGDLFE++ GA+Y+D G   +
Sbjct: 1047 LSEIEEKETRPDQVYSKLLLTTVEDGRGGEA--IEVPKVLGDLFEALLGALYVDCGRDEE 1104

Query: 1140 TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
              W V Y ++   IE  SV +P SP R+L+E+ P  A F+
Sbjct: 1105 LAWSVIYPLLTPIIEHYSVHLPISPTRQLVEMMPGAATFT 1144



 Score =  126 bits (316), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 72/170 (42%), Positives = 101/170 (59%), Gaps = 12/170 (7%)

Query: 301 FRDAVVMPWYRNQFEPTY--FYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQN 358
           FRD+VV   Y     P+   +YVA+I  +    +      +   TF +YY  +YG+ +  
Sbjct: 305 FRDSVVTTAY----APSRLRYYVADIRYD-ESPTSPFPSPSVAPTFGDYYKDRYGVDLSR 359

Query: 359 LEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHP 418
            +QPLLDVDH S RLNFL PRY   KG +LA   E+++R  R  +     LVPE+C IHP
Sbjct: 360 -DQPLLDVDHVSSRLNFLRPRYKTSKGKDLALPDEKSKRSQRSRVS----LVPEMCSIHP 414

Query: 419 FPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP 468
            P SLWR   ++PSILYR++ALL+A+E+R  +A E G+G  +  E  + P
Sbjct: 415 IPGSLWRDITNMPSILYRVDALLIAEELRQKLAVEAGIGMPVWPEGHDLP 464



 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 61/181 (33%), Positives = 96/181 (53%), Gaps = 13/181 (7%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE  GD+F+KYAI+  LY  +PNV+EG+LS LR  +VSN  LF LG+ +     ++  
Sbjct: 600 ERLEIYGDAFIKYAISELLYSDFPNVNEGRLSFLRGLRVSNQQLFYLGRSRGLAPLILTK 659

Query: 842 KFEPRDNWLPPGYFVPKYLET-ALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
            FEP  +W+PPG+           ++      + + L++ +   L   ++ +I   +C  
Sbjct: 660 PFEPVGSWVPPGFSSSSMRNVHETLDVSPQHGVNDVLNIDDEDSLDHSEIQDISGNECRG 719

Query: 901 LDCTVDMNVQSVV--PYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
                  NV+ ++  P+       I DK++AD +EALIGA L+  G   AL  M WL + 
Sbjct: 720 -------NVEPMLLPPHTFTV---ISDKTVADTIEALIGACLMSSGTNAALRLMRWLDMD 769

Query: 959 V 959
           V
Sbjct: 770 V 770



 Score = 80.5 bits (197), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 50/142 (35%), Positives = 78/142 (54%), Gaps = 5/142 (3%)

Query: 119 STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR--GRKIHPPENSP 176
           S +RR+ Y  ++   FTN  P     CY+YAV + LT P   E+  R  G ++  PE  P
Sbjct: 6   SLRRRRAYKCKIPCVFTNSLPDPGQSCYVYAVHLVLTKPDSHERAVRSQGTRLKDPEKRP 65

Query: 177 QGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK 236
             L I+  K +PK+ +F I+ R GE+ VS++    N +L+ + L+    F  Y+FT VL 
Sbjct: 66  LSLGIILNKSLPKLPAFIIYDRAGEMTVSLKHC-YNTMLTSQQLALIQRFHRYVFTDVLN 124

Query: 237 LKK--YLMLFDPNCSENSYFIV 256
           L+K    + F+P  ++N  F+V
Sbjct: 125 LEKGESSLNFEPKENKNGCFLV 146



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 34/57 (59%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838
            ++LE +GD+ L Y +T  +   +P +  G ++ LRS  V+NY+L  L  Q+ F + M
Sbjct: 973  EQLEFLGDALLDYLVTRHVLQRFPRLSPGAITDLRSAVVNNYSLACLTIQRDFHKHM 1029


>gi|449682783|ref|XP_002165718.2| PREDICTED: endoribonuclease Dicer-like [Hydra magnipapillata]
          Length = 1001

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 92/226 (40%), Positives = 132/226 (58%), Gaps = 13/226 (5%)

Query: 989  RFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            +F +KS+L+QA TH SY  N++T CYQ+ EFLGDAILD+LIT H+  + +  SPG LT  
Sbjct: 768  KFLNKSHLIQAFTHLSYLSNSVTGCYQQYEFLGDAILDFLITLHIQSNTQNLSPGQLTYF 827

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY---LMEG 1105
            RSA+VNN  F  LA++  F+ +    S  L      F+++  ++D  L  EY+    +  
Sbjct: 828  RSAVVNNNTFGLLAIKHSFYKYIYSSSNELFSSYNSFIEI-VKDDHGLKDEYFESPFVIC 886

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
                 E  + PK LGDLFESVAGAI+LDSG+ L TVWK+YY ++K  I++  + +P+ P 
Sbjct: 887  PTGSEEGYQAPKVLGDLFESVAGAIFLDSGLDLVTVWKIYYPLLKPVIDKYMIKLPRHPA 946

Query: 1166 RELLELEPENARFSKPEKLADGRRVRVTVEVFGKGS---YKGIGRN 1208
             +  E  P+           +G  V  TV+ FGK +    K  G+N
Sbjct: 947  VDFFEKYPKAKII-----FTNGEVVTCTVK-FGKDNGTEIKACGQN 986



 Score = 45.8 bits (107), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 20/104 (19%)

Query: 724 LENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKR 783
           LEN+ +L  Y  V ++VK+   S  K  E    R  S P D                 +R
Sbjct: 694 LENLLQLKNY--VTENVKSP--SVLKIFEALTTRQASMPFDL----------------ER 733

Query: 784 LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
           LE +GDSFLK A++IF++   P+ HEGKL+  R K ++  +L +
Sbjct: 734 LEVLGDSFLKQAVSIFVFFQNPSFHEGKLTIRRKKFLNKSHLIQ 777



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 65/278 (23%), Positives = 122/278 (43%), Gaps = 31/278 (11%)

Query: 187 IPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIFMDYLFTK----VLKLKKYL 241
           I K+ SF +F+R G++ + +  I   +    E N+ +   F   + T+    ++    Y 
Sbjct: 428 IYKLPSFDLFSRVGKLNIELIKIPSRIRFECEFNIDDVTNFHMNVITESCSNLVDGDIYF 487

Query: 242 MLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKF 301
            + D N ++  +  VP  SD  + V    +  +       ++    EK ++N + +E  +
Sbjct: 488 HINDENATKALF--VPLHSDVFKAVRKNCYEFIFPVIEKRLLNCTKEKPKDN-LGNEEIY 544

Query: 302 RDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQ 361
            + VV   Y       Y+  A  ++ ++  S    +    +TF +YY  KY ++I    +
Sbjct: 545 ENCVVSKNYGESKNRMYYVTA--ISKLNTSSFIEGK----KTFVQYYLEKYNIEISP-NK 597

Query: 362 PLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL-IHPFP 420
           PL+DV   S +++F               T+ E+    ++     + LVPELC  +  FP
Sbjct: 598 PLIDVISCSQQISF---------------TNCESNTNTKKKNVNMEKLVPELCKKVSLFP 642

Query: 421 ASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGK 458
           A L  +   LP I+Y      LA E++  +A +I + K
Sbjct: 643 ADLHFQLPCLPRIIYFYEYYFLALELKDMIAEKIKINK 680


>gi|80979103|gb|ABB54754.1| Dicer-2 [Drosophila simulans]
          Length = 1537

 Score =  161 bits (408), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 111/334 (33%), Positives = 166/334 (49%), Gaps = 32/334 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK + T++L   Y + +EG L+ ++SK VSN NL          + +   
Sbjct: 1205 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTQVKSKLVSNRNLLYCLADTDIPKKLNTI 1264

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F PR  W+PP   +P  +     E        N +   NL++L+ +    ++K  C D+
Sbjct: 1265 LFTPRYTWVPPSISLPHNVLALWREK---PEFANMIGPHNLRDLTLDDEESLVKGNCSDI 1321

Query: 902  DCT-----VDMNVQSVVPYN--------LVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                       N QS    +         V   +I +K IAD +EAL+G  +   G + A
Sbjct: 1322 KYNRFVEGCRANGQSFYAGSDFSSEVNFCVGLVAIANKVIADTLEALLGVIVKNYGLQHA 1381

Query: 949  LLFMSWLGL------KVIPPVTNPE------SKHLSDVLLDGF----DKFEESINYRFKD 992
               + +  +      K +  + N E        +++   +DGF       E ++ Y FKD
Sbjct: 1382 FKMLEYFKICRSDIDKPLTELLNLELGSKNIRANVNTTEIDGFLINHSHLEHNLGYTFKD 1441

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
            + YLLQA+TH SY  N +T  YQ LEF+GDAILD+LI+ +++E+    +PG LTDLRSAL
Sbjct: 1442 RRYLLQALTHPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSAL 1501

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            VNN   A + VR   H F    +  L E I +FV
Sbjct: 1502 VNNTTLACICVRHRLHFFILAENEKLSETISKFV 1535



 Score =  132 bits (332), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 134/545 (24%), Positives = 230/545 (42%), Gaps = 56/545 (10%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKRS 55
            NA+ +++RYC  +P+D F  L P I + E  E + +           SI +P+N  L+ +
Sbjct: 565  NALTLLHRYCQTIPTDAFGFLIPWINLLEEGERNKLFGANAKDKHVVSINMPLNCILRDT 624

Query: 56   VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPE-IE 114
            +    M    +A   AA +AC  LY L EL    +P T     L E    +     E   
Sbjct: 625  IYSDPMDNARIAKISAAFKACLALYSLGELSEKFLPKT-----LKERVAAIADVHFEHWH 679

Query: 115  TYPDST---------KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKR 165
             Y DS           + + Y       F + RP V   CY Y + ++    + +     
Sbjct: 680  NYGDSVTATVNKGEKSKPRTYKTHCPLEFYDARPRVGELCYAYEIFLEPQFKLCEYTEHM 739

Query: 166  GRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTL 224
               +  P N     AIL    +P++   P+F+  G + V +      V + + E L    
Sbjct: 740  YLNLQTPRN----YAILLRNKLPRLAEMPLFSNQGMLHVRVADAPLEVTIQNSEQLELLH 795

Query: 225  IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVI 283
             F   +F  +LK+ +   + D    ENSY +VP + D+ +Q  IDW+ MT   +      
Sbjct: 796  QFHGMVFRDILKIWQPCFVLDRRSKENSYLVVPLILDADQQKCIDWQLMTKFQKLAQGQG 855

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
             ++ ++E++     E  F   +V  WY N        V ++   + P S F       +T
Sbjct: 856  SNVQQREQQPAPRPED-FEGKIVTQWYTNN--DKRMLVTKVHRELTPLS-FMENNQQEKT 911

Query: 344  FEEYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + ++   KYG +I ++   ++ L++V   + +LNF    YV  +G + A +         
Sbjct: 912  YYDFTMSKYGNRIGDVVHKDKFLIEVRDLTEQLNF----YVQNRGKSKAQSKARL----- 962

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVI 460
                 K +L+PELC+   FP  LW K + LPSIL R+  LL A+ +R    + + L  + 
Sbjct: 963  -----KVILIPELCINLEFPGDLWIKLIFLPSILNRMYFLLHAESLRKRFNTYLNLDLLP 1017

Query: 461  LDEKVEWP-PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAK 519
             +     P P    + +++  +  G      N +  +D E   +  +  A   I   +A 
Sbjct: 1018 FNGTDYMPKPLEIDFSLRRNVDPLG------NAIPTEDVEEPKSLLEPMATKSIQAPMAA 1071

Query: 520  VEIVD 524
            +EI +
Sbjct: 1072 LEITE 1076


>gi|167046022|gb|ABZ10542.1| dicer-like protein B [Placozoa sp. DMJ-2008]
          Length = 357

 Score =  160 bits (406), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 120/372 (32%), Positives = 183/372 (49%), Gaps = 51/372 (13%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +G S+LKYA++I  + +Y   HEG+LS L+SK VSN NL+++G +      +I    
Sbjct: 18   LEFLGGSYLKYAVSISFFLSYSKFHEGQLSSLKSKIVSNENLYQIGIKMGLPGYIIGHNV 77

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +  D W+PPG+ + K  ++  +E          LS  NL   S     + +K KC     
Sbjct: 78   DQNDIWVPPGFSIAKKSDSIGLEEQ--------LSTLNLSMTSRVHPTQKLKNKC----- 124

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW-LGLKV--- 959
                                    IAD +EAL+G  L+E G   A  F++  LG+KV   
Sbjct: 125  ------------------------IADVMEALLGGILLELGENSANNFITNNLGIKVGRL 160

Query: 960  ---IPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--- 1012
               I  + +   K +S +         E  + Y FKD+  L+ A+THA+Y  N + +   
Sbjct: 161  SHNIAKLDDDARKEISKIYNAHNLKDLEAVLGYSFKDRKLLISALTHATYNHNRIAEGVE 220

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
            CYQRLEFLGDAIL Y++ RH Y     + P  L D   A + N   A++ +  G H +F 
Sbjct: 221  CYQRLEFLGDAILQYIVVRHCYHANNNYKPADLHDFVEASLQNESLAAMTMVYGIHKYFF 280

Query: 1073 HLSPGLHEVIQRFVKMQAEN---DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            + SP L   I + +++   N   +  L+ E   +       + + +PK LGDLFES+ GA
Sbjct: 281  YNSPSLFSQINQLLQIVDTNEECEQRLSTEEKALVYSNSLKDGVMIPKPLGDLFESLIGA 340

Query: 1130 IYLDSGMSLDTV 1141
            I++D G S++ V
Sbjct: 341  IFIDCGRSIEVV 352


>gi|302764440|ref|XP_002965641.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
 gi|300166455|gb|EFJ33061.1| hypothetical protein SELMODRAFT_84784 [Selaginella moellendorffii]
          Length = 524

 Score =  159 bits (401), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 94/260 (36%), Positives = 143/260 (55%), Gaps = 26/260 (10%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-----------IPPVTNPESKHL 971
            +  K +A+ VEALIGAY +  G +GA   + WLG++               V +PE  + 
Sbjct: 133  LSSKVLANVVEALIGAYYVHHGDKGARHVVEWLGIETGFSDAELQIARAGSVVSPEVLNS 192

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
             D     F+  E ++ Y F+ ++ L QA+TH+S    ++   Y+RLEF+GDA+LD+L+TR
Sbjct: 193  ID-----FEGLENTLGYSFRSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTR 247

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
            H+Y   +   PG LTDLR A +N+  FA   V+   H    H S   H  I+ + K    
Sbjct: 248  HIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAK---- 303

Query: 1092 NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151
                LN E   +      A  ++ PK LGD+F+S+ GA+Y+DSG++LD VWKV+  +++ 
Sbjct: 304  --HALNMEENAIYSYGFGA--VKAPKVLGDVFQSLVGAVYIDSGLNLDQVWKVFEPLLQP 359

Query: 1152 EIERLSVSVPKSPIRELLEL 1171
             +     +VP  P+REL EL
Sbjct: 360  LVT--PEAVPIHPVRELYEL 377



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 981  KFEESINYRFKDKSYLLQAMT----HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            +  ++INY     S +L+A+T    H  Y       CY+R+E LGDA L + ++  LY  
Sbjct: 30   QLRKAINYNIP-ASKILEALTAANCHEPY-------CYERIELLGDAYLKWAVSTRLYLK 81

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
                  G LT  R  +++N     LA+  G   + +
Sbjct: 82   FSDFPEGELTITRGKIISNSALHYLALEKGLETYVR 117


>gi|242033791|ref|XP_002464290.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
 gi|241918144|gb|EER91288.1| hypothetical protein SORBIDRAFT_01g015670 [Sorghum bicolor]
          Length = 1385

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 117/314 (37%), Positives = 162/314 (51%), Gaps = 25/314 (7%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV---IPPVTNPESKHLSDVLLDGF 979
            +  K IAD VEALIGAYL   G + A LF+  LG+ +     PV    + +  + +    
Sbjct: 1075 LKSKRIADSVEALIGAYLSAAGEQAAYLFLKSLGMDIEFHKMPVERKITINAENFI--NL 1132

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
               E  ++Y F D S LL+A+TH SY +   T CYQRLEFLGDA+LD++ T + Y     
Sbjct: 1133 RSLELMLDYNFSDPSLLLEALTHGSYQIAGTTACYQRLEFLGDAVLDHIFTDYFYHQYPE 1192

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             +P  LTDLRSA VNN  +A  AV+ G H    H S  LH+ +  ++  + E  F+    
Sbjct: 1193 CTPELLTDLRSASVNNSCYAHAAVKAGLHKHILHSSSALHKKMADYLD-KFEQSFS-GPS 1250

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV- 1158
            +    G C       +PK LGD+ ES+AGAIY+D+      VW+     MK  +E L+  
Sbjct: 1251 HGWEAGIC-------LPKVLGDVIESIAGAIYIDTKNDKKVVWRK----MKRLLEPLATP 1299

Query: 1159 -SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEVFGKG-SYKG--IGRNYCIAK 1213
             ++   P++EL E  +P+           D R   V VEV  KG +YK    G     AK
Sbjct: 1300 DTLEIDPVKELHEFCDPKTCSIKYTVARED-RVTSVAVEVQTKGTTYKATRTGLTKRDAK 1358

Query: 1214 CTAAKCALKHLKSA 1227
              AAK  LK +K+A
Sbjct: 1359 KLAAKSVLKDMKAA 1372


>gi|302815180|ref|XP_002989272.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
 gi|300143015|gb|EFJ09710.1| hypothetical protein SELMODRAFT_129431 [Selaginella moellendorffii]
          Length = 524

 Score =  157 bits (397), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 110/323 (34%), Positives = 168/323 (52%), Gaps = 35/323 (10%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-----------IPPVTNPESKHL 971
            +  K +A+ VEALIGAY +  G +GA   + WLG++               V +PE  + 
Sbjct: 133  LSSKVLANVVEALIGAYYVHHGDKGARHVVEWLGIETGFSDAELQIARAGSVVSPEVLNS 192

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
             D     F+  E ++ Y F  ++ L QA+TH+S    ++   Y+RLEF+GDA+LD+L+TR
Sbjct: 193  ID-----FEGLENTLGYSFGSRNLLAQALTHSSSRQASMVPIYERLEFIGDAVLDHLLTR 247

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
            H+Y   +   PG LTDLR A +N+  FA   V+   H    H S   H  I+ + K    
Sbjct: 248  HIYFSYKDLHPGRLTDLRCAALNSESFARAMVKHKLHAHILHESNDFHSQIKTYAK---- 303

Query: 1092 NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151
                LN E   +      A  ++ PK LGD+F+S+ GA+Y+DSG++LD VWKV+  +++ 
Sbjct: 304  --HALNMEENAIYSYGFGA--VKAPKVLGDVFQSLVGALYIDSGLNLDQVWKVFEPLLQP 359

Query: 1152 EIERLSVSVPKSPIRELLELEPENARFSKPEKLADG----RRVRVTVEVFGKGSYKGIGR 1207
             +     +VP  P+REL EL  ++ +  + +    G     R  V  +V G+G+      
Sbjct: 360  LVT--PEAVPIHPVRELYELCDKHMKKLEWDYSLSGDLFLARALVGNKVLGRGT----NV 413

Query: 1208 NYCIAKCTAAKCALKHL-KSAKP 1229
               +AK  AA  A+  L KSA P
Sbjct: 414  QKKMAKKLAAINAIAKLDKSASP 436



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 28/96 (29%), Positives = 45/96 (46%), Gaps = 12/96 (12%)

Query: 981  KFEESINYRFKDKSYLLQAMT----HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            +  ++INY     S +L+A+T    H  Y       CY+R+E LGDA L + ++  LY  
Sbjct: 30   QLRKAINYNIP-ASKILEALTAANCHEPY-------CYERIELLGDAYLKWAVSTRLYLK 81

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
                  G LT  R  +++N     LA+  G   + +
Sbjct: 82   FSDFPEGELTITRGKIISNSALHYLALEKGLETYVR 117


>gi|391332351|ref|XP_003740599.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1610

 Score =  157 bits (396), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 127/453 (28%), Positives = 215/453 (47%), Gaps = 54/453 (11%)

Query: 771  PDLENHTGPSPK-------------------RLETIGDSFLKYAITIFLYCTYPNVHEGK 811
            PDL +  GPS                     R   +G+SFL+  I   L+    N+HE +
Sbjct: 1057 PDLNDCEGPSAADFVRILSKPTTSVDELDIGRYRLVGESFLQMVIGFSLHDQRRNLHEKE 1116

Query: 812  LSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV----PKYLETALIEA 867
            L  LRS ++S  NL     ++   E +   KF  ++N+LPPGY       K L+T    A
Sbjct: 1117 LRSLRSYKISTRNLLVRAYERNITEILDNVKFIAKENFLPPGYRTLEKEEKLLDTTFRLA 1176

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD----------CTVDMN-VQSVVPYN 916
             + +  +       L+EL     LE + +   +LD           T++   + S VP  
Sbjct: 1177 VYRSYGFEIDGSLCLRELRHATNLEEVVKAIAELDPEELQHETLQTTLEAGELPSQVPVK 1236

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPE--------- 967
                +    +  AD V+A+ G  + +CGP GAL  M WLGL+    + +P+         
Sbjct: 1237 KFQTYRA--RVAADAVKAITGLAVDKCGPSGALRVMRWLGLEFGRSIDSPDFVDAFALNL 1294

Query: 968  -SKHLSD---VLLDGFDKFE---ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
             S  +SD   V+L+   + E     + YRF+ K+ +L+A+TH SY  ++LT    +L  +
Sbjct: 1295 DSLRVSDSDAVILNRLHQIETVESRLRYRFEHKALVLEAITHHSYRGDSLTQSNVQLCSI 1354

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            G  +++YLI++ +           L +LR+++ + +  A +  + G H    + +  L  
Sbjct: 1355 GAVVIEYLISKFIASLPLDVESYNLFELRASICSAVNHAHIVAKNGLHKNLLYTNQSLFT 1414

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            VI+ ++     +D+       L + E D+ +D  VP AL ++  ++ GA+++DSG +L+ 
Sbjct: 1415 VIRNYI--DCLDDYEPQPSKSLGDWESDDTDDDRVPLALAEMLMALVGAVFIDSGKNLEI 1472

Query: 1141 VWKVYYEIMKSEIERLSVSVPKSPIRELLELEP 1173
            VW VY E+   +I RL+ ++P SPIREL    P
Sbjct: 1473 VWSVYAELCGEQILRLANNIPISPIRELFARFP 1505



 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 131/527 (24%), Positives = 223/527 (42%), Gaps = 105/527 (19%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK- 60
            +A+ I+  YC  +  D ++   P   T+   K D+   FT S+ +P+  P++ S+T    
Sbjct: 549  SAMSILCWYCQTIVHDQYSNSLPEFFTLD--KNDEG--FTMSLTMPLLCPVRESITNEDR 604

Query: 61   -MPTKLLAWRIAAMEACRVLYELKELDNDLMP---VTKEFINLY---ENTEPVVPKTPEI 113
             MPT+  A    A+E CR L+E +EL   L+P    T  + + +   E+   +    P++
Sbjct: 605  PMPTRAKAKAYLALEMCRKLHEKRELTEHLLPRKLTTGRYSSAWMSDEDRTILEEIRPKM 664

Query: 114  ETYPDST-KRRQFYHKRMAS-----CFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGR 167
               PD+  K RQ+ ++R  +        N        C+LY  K      + ++ + R  
Sbjct: 665  TRCPDTRHKTRQYLNRRAIAPPLEILEENRDCGCIDECHLYVFKNS----VFEKSSSRST 720

Query: 168  KIHPPENSPQG---LAILTT---KYIPKVCSFPIFTRCGEVEVSIELID----KNVVLSE 217
                P + PQG   L IL     + +  +  FPIFT     E S +LID      V +S+
Sbjct: 721  GAKSPADGPQGSTYLGILVRNRDEQLENLPRFPIFT-----ESSEQLIDVVYAGTVSMSQ 775

Query: 218  ENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSEN---SYFIVPTVSDSEQIVIDWKFMTL 274
               +    F  Y+F+ VL +          CS     + F VP V   +++  D  F   
Sbjct: 776  SKKATFARFNRYIFSVVLNI---------GCSATKPLTNFAVPCVVPVDELG-DEAFEIN 825

Query: 275  ISEHHNDVIQDIPEKERENFVFDESKFRDAVV-MPWYRNQFEPTYFYVAEIMTNVHPRSM 333
            +    +  +   P+ ER  F+FD+  + DAVV + ++ N+  P    V   +    PR  
Sbjct: 826  LRVAQSVGVATQPDYER--FIFDKELYEDAVVEVLFHENENAPP---VNRNVQGRGPRDY 880

Query: 334  F-------PSRTNTYQ-----------------TFEEYYSLKYGLQIQ-------NLEQP 362
            F       P  T+                     F EY+    G Q++       N +QP
Sbjct: 881  FNRYYVRNPCATDAAGKPLSLTASGYFPFAPDLNFLEYFG---GKQMRCRPNVPTNEDQP 937

Query: 363  LLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPAS 422
            +L+++     L  L P            ++E + R  ++++     +  +  ++H   A+
Sbjct: 938  ILELESVESSLEMLFP------------SAESSDRGSKKAVRSLAYVPAQFVVVHKMKAN 985

Query: 423  LWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPP 469
            LWR++V LPSILYRLN   + + +R  +A   G+G    +E   W P
Sbjct: 986  LWRRAVCLPSILYRLNRFHVCETLRRTIARATGIGPA--NENHRWEP 1030


>gi|379055839|emb|CCD32423.1| dicer-1b, partial [Acyrthosiphon pisum]
          Length = 190

 Score =  155 bits (391), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 88/190 (46%), Positives = 99/190 (52%), Gaps = 65/190 (34%)

Query: 765 FSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPN 806
           FSFDFQPDL  H GPSP                  +RLETIGDSFLKYA+T +LYCT+ N
Sbjct: 48  FSFDFQPDLNYHPGPSPSILLQALTTANAIDGYDLERLETIGDSFLKYAVTAYLYCTHNN 107

Query: 807 VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
           VHEG LS LRS  VSN NL++LGK K+FGE MI+TKFEPR NWLPP Y  P  LE A+I 
Sbjct: 108 VHEGILSDLRSNHVSNLNLYRLGKLKMFGERMISTKFEPRSNWLPPCYIGPHKLEKAVIN 167

Query: 867 AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
           +                                                  +TQH   DK
Sbjct: 168 SNIS-----------------------------------------------ITQHITNDK 180

Query: 927 SIADCVEALI 936
           SIADCVEALI
Sbjct: 181 SIADCVEALI 190



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 33/87 (37%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 979  FDKFEESINYR-FKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYE 1035
            FD F+  +NY      S LLQA+T A+       D Y  +RLE +GD+ L Y +T +LY 
Sbjct: 50   FD-FQPDLNYHPGPSPSILLQALTTANAI-----DGYDLERLETIGDSFLKYAVTAYLYC 103

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLA 1062
                   G L+DLRS  V+N+    L 
Sbjct: 104  THNNVHEGILSDLRSNHVSNLNLYRLG 130


>gi|414453403|gb|AFX00003.1| Dicer [Mnemiopsis leidyi]
          Length = 2002

 Score =  153 bits (386), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 141/479 (29%), Positives = 212/479 (44%), Gaps = 68/479 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL-FKLGKQKVFGESMIA 840
            +RLE +GD FLK+  T++ Y T P+ HEG LS  RS+ +SN NL  +  K+      ++ 
Sbjct: 1480 ERLEFLGDRFLKFVSTLYYYRTMPDKHEGWLSRYRSEMISNQNLAVRSCKEIELPRYILN 1539

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS--------PEKVLE 892
             K +P+ NW+PP  F+  +    + EA       +  +   L+ L         PE  ++
Sbjct: 1540 KKVDPKSNWIPPC-FLSTHTLNKISEAQNTVDSVSKEAREYLELLQNSTEDIEIPEGYID 1598

Query: 893  IIKQ-KCVDLDCTVDMNVQSVVPYNLVTQ--------------HSIPDKSIADCVEALIG 937
             IK  K       V   + S   YN  +                 +  K +AD +EAL+G
Sbjct: 1599 EIKLLKKARPFLEVGHFLMSTSNYNSYSDALEKLCDIIPVGHLQEMGTKDVADSMEALLG 1658

Query: 938  AYLIECGPRGALLFMSWLGL-------------------KVIPPVT----NPESKHLSDV 974
              +   G R  +  +  + +                   K  PP      NP +  L+  
Sbjct: 1659 LCVARYGYRKGVDLLDRIKVTTFQAQSEAEPDDLNNHLYKQTPPSQISNLNPVAIRLARS 1718

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
              D     E++I Y FK+  YLL+A+THAS+    +  CYQRLEFLGDA+LD L+   +Y
Sbjct: 1719 RCDNLRTVEKAIGYEFKEPLYLLEALTHASF--TEIDACYQRLEFLGDAVLDVLMVFRIY 1776

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV----KMQA 1090
            ED   +  G +TDL S+LV N   + +  +L  H    + S  L  V+  F     K Q 
Sbjct: 1777 EDHPEYDQGQMTDLLSSLVCNTTLSKVCTKLQLHKSLLYDSAELFNVLAGFFMNFEKDQL 1836

Query: 1091 EN---DFTLNQEYYLMEGECDEAEDI----------EVPKALGDLFESVAGAIYLDSGMS 1137
            E    D +L +  ++   +CD  + I          + PK LGDL ESV GAIYLD    
Sbjct: 1837 EQWCKDLSL-ERVFVDTVDCDTPDKIPILNLDNKVVQAPKLLGDLVESVIGAIYLDCDED 1895

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
            +  V++V +   +      S +VPK+P   + EL     + S      D  R   TV +
Sbjct: 1896 ILRVYEVIWPWFEPFYTAFSKNVPKNPKAMINELYSGAIKKSIVSYPGDHYRSIATVSI 1954



 Score =  103 bits (256), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 120/476 (25%), Positives = 203/476 (42%), Gaps = 82/476 (17%)

Query: 4    AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
            AI  +N YC++LP D +T + P    S+   +D+  F  +I LP   P+K  + G  M  
Sbjct: 989  AIQRLNFYCSQLPKDDYTDVMP----SDYTIEDARGFKTTITLPKLCPVKIPIEGQYMSN 1044

Query: 64   KLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIE-TYPDST 120
            K LA   AAM+    LY   EL + L+P    KE   L   +E     T + +   P + 
Sbjct: 1045 KKLAKMSAAMKTLEFLYSANELTDTLLPKFRQKEVNPLLIQSESGRSLTVDQKLKIPSAF 1104

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
             RR    K  +  F           YLY++++ L   IP++ N     +   ++      
Sbjct: 1105 WRRDL--KEASGKF-----------YLYSIRLHL---IPNDPNFDEYFVDGKDHKVACFG 1148

Query: 181  ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            IL  + +P+   F ++ R G V V+I+  ++ V +    L +   F + LFT +L L   
Sbjct: 1149 ILCKERLPQFPLFTVYPRFGSVTVNIQF-ERAVTVPIHVLQSYYWFQEALFTHLLDLNHV 1207

Query: 241  LMLFDPNCSENSYFIVPTVSDSEQIV------------IDWKFMTLIS-----EHHNDVI 283
                D      SYFI+P    S+ +             ID +F+  +      E +  + 
Sbjct: 1208 TKSSD--AIFKSYFILPLCWKSKGLQFRSSDKKSCFLDIDSRFIAQLHKQWDYETNRWIF 1265

Query: 284  QDIPEKERENFVFDESKFRDAVVMPWY----RNQFEPT---YFYVAEIMTNVHPRSMFPS 336
             ++P+        D  K  D+V+ P Y    RNQ       YFY     + + P+     
Sbjct: 1266 GNMPD--------DLDKCLDSVIFPAYNKDLRNQCNKNLSGYFYAVIRKSELTPKDKMRG 1317

Query: 337  RTNT------YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
            R+         QT+EEY+  K+ +++ +  + LL+  + +    FLT             
Sbjct: 1318 RSVKNPDDLETQTYEEYHYAKHDIKLVHPTKNLLECRNVTRHYAFLT------------- 1364

Query: 391  TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEI 446
              E   +++         L+ E+  +HP P+SLW ++  LPSIL+R+    L++E+
Sbjct: 1365 --EHASKKLNRP---PMFLIGEIHQVHPMPSSLWSQATCLPSILWRIETFCLSNEL 1415


>gi|76155250|gb|AAX26507.2| SJCHGC08817 protein [Schistosoma japonicum]
          Length = 167

 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 67/116 (57%), Positives = 90/116 (77%), Gaps = 1/116 (0%)

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            ++D+E+PKALGD+FES+AGAI+LDS  SLDTVW+V+Y IMK  IER +  +PKSP+R+LL
Sbjct: 35   SDDVEIPKALGDIFESLAGAIFLDSNFSLDTVWQVFYPIMKERIERYTACIPKSPVRQLL 94

Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
            ELEPE  +F +P ++ DG R+ V   V GKG + G+GRNY +AK  AAK AL+ L+
Sbjct: 95   ELEPEGTKFERPRRMVDG-RISVCAHVLGKGRFYGVGRNYRLAKSLAAKRALRVLR 149


>gi|189441606|gb|AAI67373.1| dicer1 protein [Xenopus (Silurana) tropicalis]
          Length = 811

 Score =  152 bits (383), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 82/190 (43%), Positives = 110/190 (57%), Gaps = 3/190 (1%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           ++ AI  +NRYCARLPSD FT LAP     E  +    ++  ++ LPINSPL+  + G  
Sbjct: 618 INTAIGHINRYCARLPSDPFTHLAPKCKTREFPDG---LYRSTLYLPINSPLRAPIVGPP 674

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
           M    LA R  A+  C+ L+E+ ELD+ LMPV KE +   E  +    +   +   P ST
Sbjct: 675 MNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 734

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
           KRRQ Y K +  C  N  P    PCYLY + M LT P+PDE N R RK++PPE++ +   
Sbjct: 735 KRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 794

Query: 181 ILTTKYIPKV 190
           ILT K IP+V
Sbjct: 795 ILTAKPIPQV 804


>gi|413933739|gb|AFW68290.1| hypothetical protein ZEAMMB73_539070 [Zea mays]
          Length = 707

 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 159/316 (50%), Gaps = 29/316 (9%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV------IPPVTNPESKHLSDVLL 976
            +  K IAD VEALIGAYL   G + A +F+  LG+ +      I  V   +++   +V  
Sbjct: 397  LKSKRIADSVEALIGAYLSTAGEQAAYIFLKSLGMDIEFHKMPIERVITIKAEEFINV-- 454

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
                  E  ++Y F D S L++A+TH SY +   T CYQRLEFLGDA+LD++ T + Y  
Sbjct: 455  ---KSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 511

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                +P  LTDLRSA VNN  +A  AV+ G H    H S  LH+ +  ++  + E  F+ 
Sbjct: 512  YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLD-KFEQSFSG 570

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
                +       EA  I +PK LGD+ ES+AGAIY+D+      VW+     MK  +E L
Sbjct: 571  PSHGW-------EA-GISLPKVLGDVVESIAGAIYIDAKHDKGVVWRS----MKRILEPL 618

Query: 1157 SV--SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG-SYKG--IGRNYCI 1211
                ++   P++EL E         +     D     V  EV  +G +YK    G +   
Sbjct: 619  VTPDTLQNDPVKELQEFCDSKGYTLEYTVTRDNGVSSVVAEVRTEGTTYKATRTGFSKLD 678

Query: 1212 AKCTAAKCALKHLKSA 1227
            AK  AA   L+ LK+A
Sbjct: 679  AKKLAASSVLRDLKAA 694



 Score = 49.7 bits (117), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 26/74 (35%), Positives = 39/74 (52%), Gaps = 1/74 (1%)

Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           S + LET+GDSFLKY  T   +  Y + HEG L+ ++   +SN  L +L         + 
Sbjct: 312 SQESLETLGDSFLKYITTQHFFVKYKHQHEGMLTKMKKNVISNAALCQLACSNNLVGYIR 371

Query: 840 ATKFEPRDNWLPPG 853
           +  F P+  W+ PG
Sbjct: 372 SEAFNPK-TWIVPG 384



 Score = 42.4 bits (98), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 84/211 (39%), Gaps = 35/211 (16%)

Query: 253 YFIVPTVSDSEQIVIDWKFM----------TLISEHHNDVIQDIPEKERENFVFDESKFR 302
           Y ++P VS      IDW+ +          T +   H    +D    + ++  F     R
Sbjct: 98  YLLLPVVSGK----IDWRSIKFSASEMPEATNMDMRHCYPCKDTGIVQTKDGTFCSCMLR 153

Query: 303 DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQP 362
           +++V   +   F     Y      +++  S+      ++ +++ Y+  +Y L ++  +Q 
Sbjct: 154 NSIVCTPHNGMF-----YAVCGFLDLNANSLLHRSDGSFLSYKTYFKERYNLDLRCEDQA 208

Query: 363 LLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLI--HPFP 420
           LL+        NFL          N     E + + + E       L PELC++   P  
Sbjct: 209 LLEARKLVEVRNFL-------HKCNYKKEKERSGKSVVE-------LPPELCIVVMSPMS 254

Query: 421 ASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
           A   R    +PSI+YR+  +LL+  ++  + 
Sbjct: 255 AITLRSFTFIPSIMYRIQCMLLSMNLKMQLG 285


>gi|212723814|ref|NP_001131630.1| uncharacterized protein LOC100192986 [Zea mays]
 gi|194692090|gb|ACF80129.1| unknown [Zea mays]
          Length = 365

 Score =  150 bits (379), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 112/316 (35%), Positives = 159/316 (50%), Gaps = 29/316 (9%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV------IPPVTNPESKHLSDVLL 976
            +  K IAD VEALIGAYL   G + A +F+  LG+ +      I  V   +++   +V  
Sbjct: 55   LKSKRIADSVEALIGAYLSTAGEQAAYIFLKSLGMDIEFHKMPIERVITIKAEEFINV-- 112

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
                  E  ++Y F D S L++A+TH SY +   T CYQRLEFLGDA+LD++ T + Y  
Sbjct: 113  ---KSLELLLDYSFNDPSLLMEALTHGSYQIAGTTPCYQRLEFLGDAVLDHIFTDYFYHQ 169

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                +P  LTDLRSA VNN  +A  AV+ G H    H S  LH+ +  ++  + E  F+ 
Sbjct: 170  YPECTPELLTDLRSASVNNSCYAHAAVKAGLHKHVLHSSSALHKRMADYLD-KFEQSFSG 228

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
                +       EA  I +PK LGD+ ES+AGAIY+D+      VW+     MK  +E L
Sbjct: 229  PSHGW-------EA-GISLPKVLGDVVESIAGAIYIDAKHDKGVVWRS----MKRILEPL 276

Query: 1157 SV--SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG-SYKG--IGRNYCI 1211
                ++   P++EL E         +     D     V  EV  +G +YK    G +   
Sbjct: 277  VTPDTLQNDPVKELQEFCDSKGYTLEYTVTRDNGVSSVVAEVRTEGTTYKATRTGFSKLD 336

Query: 1212 AKCTAAKCALKHLKSA 1227
            AK  AA   L+ LK+A
Sbjct: 337  AKKLAASSVLRDLKAA 352


>gi|391348645|ref|XP_003748555.1| PREDICTED: endoribonuclease Dicer-like [Metaseiulus occidentalis]
          Length = 1461

 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 115/375 (30%), Positives = 170/375 (45%), Gaps = 68/375 (18%)

Query: 770  QPDLENHTGPSP------------------KRLETIGDSFLKYAITIFLYCTYPNVHEGK 811
            QPDLEN  GPSP                  +RLE +GDSFL+   T  +   YP+    +
Sbjct: 1075 QPDLENCLGPSPCDLMKALTTRGCEEIFDLERLELLGDSFLQIVSTFAVMDWYPDKSISE 1134

Query: 812  LSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPA 871
            L+ LR  +V+N +L     +K   + + A  F    N+LP G+    + E  L++  F  
Sbjct: 1135 LNVLRQYEVNNSHLLYRAHEKGLTQVLEAQPFRASYNFLPFGHRTAPF-EQKLLQREFLC 1193

Query: 872  SL---WN---CLSLPNLKELS-----PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQ 920
             L   W      S+P LK+L       E +    +     ++  VD  +      +L  +
Sbjct: 1194 CLVKHWGFEAVSSVPRLKDLRFCKNIQEALNHFAESGEEKINAYVDEKIYD--SEDLPKR 1251

Query: 921  HSIPDKSI--------ADCVEALIGAYLIECGPRGALLFMSWLG---------------- 956
            H IP +S          D VEA+ G YL +CGP GAL F  W+G                
Sbjct: 1252 HEIPVRSFHDFKAKIGGDVVEAMAGVYLEKCGPVGALRFFKWIGKDFGDTETNNFLDAFK 1311

Query: 957  -----LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                  + +PP    +  HL        DK E  + Y+FK +   LQA+TH S   + LT
Sbjct: 1312 LDFSAAQKVPPEQMRQYSHL-------IDKVERQVGYKFKSRGLALQAITHHSCREHLLT 1364

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            D   +L F+G+A++DYL+T ++Y    + +PG LTDLRSAL+N  + A   VR   H   
Sbjct: 1365 DDMDKLAFVGEAVIDYLLTLYIYGLSTSLNPGQLTDLRSALINKQVTAYAVVRAELHTVL 1424

Query: 1072 KHLSPGLHEVIQRFV 1086
             H S  L   I++++
Sbjct: 1425 LHTSNKLFSAIKKYL 1439



 Score =  127 bits (319), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 146/530 (27%), Positives = 238/530 (44%), Gaps = 83/530 (15%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT--GHK 60
            +AI I+  YC R     +  L P   + E  +     F C++ +PI  P+K  ++     
Sbjct: 549  SAISIIYGYCQRFMRLKYPNLFPFFDMEETPDG----FVCTLSMPIVCPVKEKISNRARP 604

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYE-NTEP--VVPKTPE----- 112
             P+K  A    A+E C+ L++  EL ++L+P  + + NLY+ +T P  V PK        
Sbjct: 605  FPSKDKAKSYVALEMCKRLHQCGELADNLLP-RRMYTNLYKLHTRPEDVNPKEDLKKEML 663

Query: 113  IETYPDSTKRRQFYHKRMASCF------TNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRG 166
            +       K+R    ++ AS         +C P ++T  +LY ++ ++      EQN RG
Sbjct: 664  VTRCKAGEKKRYVLPRKRASILELKEEGVDCDP-LDT-YHLYVIRTEVVSWTAKEQNWRG 721

Query: 167  RKIHPPENSPQGLAIL---TTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNT 223
              +  P   P  LAI+    +  +  V  FPIFTR GE  VS E     +   +E  S  
Sbjct: 722  DPVFDPVKYPTWLAIVLRSKSNEMQSVPKFPIFTRSGEECVSFEYAGAQI-FDDELKSLC 780

Query: 224  LIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT--VSDSEQIVIDWKFMTLISEHHND 281
              F  Y+F+ VL +K  L+  +P    N+  +VP   ++ S +  I+            D
Sbjct: 781  ARFNRYVFSIVLDVKDNLL--NPVAGFNTPCLVPVDEINGSGRYSINM-----------D 827

Query: 282  VIQDIPEKER---ENFVFDESKFRDAVVMPWYR---NQFEPTY-------------FYVA 322
            V+ +I   +    +NF F +  + DAVV   Y    NQ E +              FYV 
Sbjct: 828  VLWNIGRLQPPNFDNFEFRDEDYDDAVVELLYHINENQKELSREVHSRTPQDVYSRFYVT 887

Query: 323  EI-MTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ---------IQNLEQPLLDVDHTSCR 372
            +        + + P+ T  YQ  E     +YG +         +    QP+L+V+H   R
Sbjct: 888  KTRAVGEDGQPLTPNSTGYYQFDESLSFAEYGFRRTRRTGPEGLLEAFQPVLEVEHAHKR 947

Query: 373  LNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPS 432
            L  L PR  +++        E+ ++ +++ + K   ++P+   +H   ASLWRK  S+P+
Sbjct: 948  LRMLKPRSSDQQ--------EKKQKYLKDVVMK--YVLPQFVAVHKIKASLWRKLTSIPT 997

Query: 433  ILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK-KLKE 481
            I++RLN LLLA+++R  +A    L K       +WP   F    K KLKE
Sbjct: 998  IVHRLNRLLLAEDVRRDIALACRL-KPASPSGQKWPYMEFVSPTKAKLKE 1046


>gi|242033789|ref|XP_002464289.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
 gi|241918143|gb|EER91287.1| hypothetical protein SORBIDRAFT_01g015666 [Sorghum bicolor]
          Length = 462

 Score =  150 bits (378), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 127/405 (31%), Positives = 188/405 (46%), Gaps = 83/405 (20%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY     L+  Y    E  L+ +R ++VSN  L +L  +      + 
Sbjct: 63   SLESLETLGDSFLKYVTGQDLFSKY-TYREDMLTSMRGEKVSNPALCQLACKSEIVGYIR 121

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
               F P+  W  PG              G+     N             KVL        
Sbjct: 122  GELFSPK-KWTIPGL-------------GYDTRGNN-------------KVL-------- 146

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
                T DM     +P        I  K IAD VEAL GAYL  CG   A+ F+  LG+ V
Sbjct: 147  -FRTTNDMYSLDEIP--------IKSKRIADTVEALTGAYLSACGELAAVHFIKSLGMDV 197

Query: 960  -------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
                   +  + + +S+   DV     +  +  I Y F D S L++A+TH+SY    +T 
Sbjct: 198  ELHSKMQVERIVSTKSEEFIDV-----ESLQTIIGYVFDDSSLLIEALTHSSYNTAGITT 252

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAH-SPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            C +RLEFLGDA+LDY++T + Y       +P  LT+LR A VNN  +A  AV+ G H   
Sbjct: 253  CNERLEFLGDAVLDYILTDYFYRKYYPKCTPALLTNLRKASVNNWCYAHAAVKAGLH--- 309

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
            KH+   LH   ++ +K +++   F+     +           I +P+ L DLFE++AGAI
Sbjct: 310  KHI---LHSSSKQMIKDLESSGPFSGPSHGW--------EPGIGLPEDLADLFEAIAGAI 358

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS----PIRELLEL 1171
            Y+DSG   + VW+    ++      + ++ P++    P+ EL EL
Sbjct: 359  YVDSGNDKEAVWRAMRRLL------VPLATPETILLDPVSELKEL 397


>gi|353236820|emb|CCA68807.1| hypothetical protein PIIN_02669 [Piriformospora indica DSM 11827]
          Length = 1466

 Score =  149 bits (375), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 119/413 (28%), Positives = 187/413 (45%), Gaps = 80/413 (19%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD++LKY  +I+L+ T PN HEG L   R K +SN  L     +    + + + 
Sbjct: 961  ERLELLGDAYLKYLSSIYLFVTNPNKHEGILHLARQKIISNRALLVNADKSGLPQYIQSK 1020

Query: 842  KFEPRDNWLPPGYFV--PKYLETAL---------IEAGFPASLWNCLSLPNLKELSPEKV 890
             F P+  WLP GY V  P+   TA          +E     S  +   LP          
Sbjct: 1021 PFLPK-MWLPRGYTVVRPEPKSTATHKESRGNTNMEIKEERSSPDPNGLPTSANEDKSLT 1079

Query: 891  LEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL 950
            ++  +QK        D + Q            + DK +AD  EA+IGA     GP     
Sbjct: 1080 IKADEQKLKSKKSLYDEDHQW-----------LGDKCVADVAEAIIGAAFQTGGPS---- 1124

Query: 951  FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKF-----------------------EESIN 987
                LGLKV+      +S HL    ++ +D F                       E ++ 
Sbjct: 1125 ----LGLKVV------KSLHLPLPFIESWDDFSLKAKAPPPDLTITLEDNVLETVEATVG 1174

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
             +F     L QA+TH S   N +T CY+RLEFLGDA+LD+L+ +H+++     +PG LT 
Sbjct: 1175 AKFHRPHILAQALTHTSARGNDMT-CYERLEFLGDAVLDFLVIQHIFDLHGRLTPGALTM 1233

Query: 1048 LRSALVNNIIFASLAVRLGFHHFF----KHLSPGLHEVI------QRFVKMQAENDFTLN 1097
            L+ A+V+N   A+++V  G H F     K++   + E +      QR     A+ +  L 
Sbjct: 1234 LKGAMVSNSALAAISVHYGLHKFLVVESKNVKKAIDEYVPAVEEKQRLEYAAADEEGRLK 1293

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
             +Y+L         ++E PK++ D+ ES+ GA+Y+  G  L     +Y  +++
Sbjct: 1294 GQYWL---------EVEPPKSVADVVESILGALYVSDGFKLTGAQAMYDTLLR 1337



 Score = 41.6 bits (96), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 48/188 (25%), Positives = 78/188 (41%), Gaps = 33/188 (17%)

Query: 267 IDWKFMTLISEHH-----NDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYV 321
           I W  MT  ++ H      D I+ +           E   +DAVV  W+  +F   Y  +
Sbjct: 769 IPWDLMTYAADQHLVPLRTDTIEAL-----------EQDIKDAVVQDWW-TEFTKRYDCM 816

Query: 322 AEIMTNVHPRSMFPS-RTNTYQTFEEYYSLKY-GLQ-IQNLEQPLLDVDHTSCRLNFLTP 378
           + +  +++P +     R   +    EY   K  G + + + +QPL++V +         P
Sbjct: 817 S-VRRDLNPVTPLEGMRKQKFSNLVEYCKAKRKGFEGLVDYDQPLIEVSNL--------P 867

Query: 379 RYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLN 438
             VNR    L+ T   +       L   + ++PELC     PAS  R    LPSI+ R+ 
Sbjct: 868 SVVNR----LSPTISSSNTAPGAPLYTAKFVIPELCSKFTIPASTMRTLSLLPSIMKRVE 923

Query: 439 ALLLADEI 446
             LL  E+
Sbjct: 924 DTLLVREL 931


>gi|241896736|emb|CAZ65730.1| dicer-2 protein [Mucor circinelloides f. lusitanicus]
          Length = 1608

 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 118/413 (28%), Positives = 179/413 (43%), Gaps = 84/413 (20%)

Query: 755  IIRNTSTPSDFSFDFQPDLENHTGPSP------KRLETIGDSFLKYAITIFLYCTYPNVH 808
            + R ++   D   D    LE +T PS       +RLET+GDS LK+  TI LY  +P  +
Sbjct: 1133 LCRQSAERYDLPIDDANMLEAYTTPSANMEMNYERLETLGDSLLKFIATIRLYINFPFSN 1192

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EG+L HLR + + N  L++  K+  F   + +  F  R  W PPG               
Sbjct: 1193 EGELHHLRIRVICNRALYRSAKRLKFYRYVTSQAFN-RRYWRPPG--------------- 1236

Query: 869  FPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSI 928
            F +   N  ++  LK                                     H + DK++
Sbjct: 1237 FTSPADNQETIDGLK------------------------------------YHKLSDKTL 1260

Query: 929  ADCVEALIGAYLIECGPRGALL-----------FMSWLGLKVIPPVTNPESKHLSDV-LL 976
            AD VEA +GA  +  G  G L              +W   K     +  +    ++V  L
Sbjct: 1261 ADIVEASLGAAYLSNGLEGGLHAAIQLQIPFDEIKTWDDFKPTFEESRKQVPARAEVRAL 1320

Query: 977  DGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
               D  K  E +   FK    +++A+THAS   N+ + CYQRLEFLGDAILD+++ R+L+
Sbjct: 1321 RSLDLPKVTEIVGREFKTPLLIVEALTHAS-LPNSTSPCYQRLEFLGDAILDFMVIRYLF 1379

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                   PG +TDL+ + VNN I   + +  G +    H S  L   I+ FV    E   
Sbjct: 1380 ARYPDADPGIITDLKDSCVNNHILGIVCIETGLYRHIIHYSGKLIRAIEFFVSEVEETKA 1439

Query: 1095 TLNQ--EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                  EY++         D  +PK L D+ ES+ GA ++D+G  L+ V +++
Sbjct: 1440 RGEAVGEYWV---------DFNIPKVLSDVVESMLGATFVDAGFRLEAVEELF 1483



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 110/272 (40%), Gaps = 34/272 (12%)

Query: 179  LAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
            L +++ K  P +    +F +     V +  I   ++   E +     +M  L T ++   
Sbjct: 888  LCLISKKPFPTLSDLKLFHKSMPFYVHLRNISTEIMFDREKILLLSEYMKKLMTALIN-- 945

Query: 239  KYLMLFDPNCSENSYFIVPTVSDSEQIVIDW----KFMTLISEHHNDVIQDIPEKERENF 294
                +F     E  Y+IVP V   E    +      F TLI       I  I E     F
Sbjct: 946  ---KVFHCPIVEIPYYIVPLVKHCENTAFETLALTDFETLIDWGE---IDRIIESTSRPF 999

Query: 295  VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS----RTNTYQTFEEYYSL 350
              D+    D++V+    N      ++V  + T++ P S  P     R   Y +F +YY+ 
Sbjct: 1000 TLDDYDPTDSIVVDQSDNM---RRYFVTNVRTDMSPLSPVPDGVKIRETGYASFADYYNE 1056

Query: 351  KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLV 410
            K  ++  +  QP+L+V      +NFL P   ++  +    ++                 V
Sbjct: 1057 KKFVEELDTSQPMLEVKRLKKVMNFLYPGKPSQAQMKGPMST---------------WTV 1101

Query: 411  PELCLIHPFPASLWRKSVSLPSILYRLNALLL 442
            P  C      AS+++ ++ +PSI+ R++++LL
Sbjct: 1102 PSFCQRFFMSASVYQATMMIPSIMTRIDSILL 1133



 Score = 53.1 bits (126), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/142 (30%), Positives = 65/142 (45%), Gaps = 15/142 (10%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           NA+ ++++YC+ LPSD F  L PI       E     + C + LP N+P +  +  H   
Sbjct: 626 NAVPLIHKYCSSLPSDSFCVLKPIFENIVTGEG----YICKLILPSNAPFQ-EMESHVCG 680

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYPDST 120
           +K LA    A+ AC  L EL  LD  L+P  + +E +        + P+  E      S 
Sbjct: 681 SKDLARASVALNACIRLRELDALDKHLLPRNLKREILG------DMAPQYDENGYIIGSR 734

Query: 121 KRRQFYHKRMASCFTNCRPSVN 142
           +R   Y KR    +   RP +N
Sbjct: 735 RRHGLYEKRTPKFWE--RPRLN 754


>gi|299754132|ref|XP_002911949.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
 gi|298410618|gb|EFI28455.1| type III restriction enzyme [Coprinopsis cinerea okayama7#130]
          Length = 1457

 Score =  145 bits (366), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 133/459 (28%), Positives = 210/459 (45%), Gaps = 86/459 (18%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLET+GD+ L+   T+ L+  YPN HEG+L+ LR   VSN                 
Sbjct: 973  SNQRLETLGDAVLQLCTTVHLFNQYPNRHEGQLTTLRRATVSN----------------- 1015

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
                              K+L    +E G             L+E    ++  + + + +
Sbjct: 1016 ------------------KFLLQRALEMG-------------LEEYITVEIASVARWRYI 1044

Query: 900  ---DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
               D D     +V+++VP           +S+ DC+EAL+GA  ++ G   AL     LG
Sbjct: 1045 LGEDADTAPPRSVRTLVP----------RRSLQDCMEALLGASFLQGGIPMALQAGPSLG 1094

Query: 957  LKVIPPV---TNPESKHLSDVLLDG-FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            ++   P+      E K  ++V     FD  +E + Y F   S L++A+TH S+   T   
Sbjct: 1095 VEFGGPLPWEMRYERKGPAEVATTHLFDTLQERLGYTFHSNSILVEAVTHPSF--ATDGP 1152

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFF 1071
             YQRLEFLGDAILD ++  +LYE     +   L+ LR+ ++     A LA++ LG H   
Sbjct: 1153 SYQRLEFLGDAILDLVVVHYLYEKFPEANSHQLSLLRAKVICAPTLAYLAIKELGVHKIL 1212

Query: 1072 KHLSPGLHEVIQRFVKMQAE-NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
               + GL+  I+ +V +  +  D  + + YY            + PKA+ D+FES+ GA+
Sbjct: 1213 LINNMGLYRAIEAYVPVFEDITDEEIARSYY----------KFDPPKAISDVFESLVGAV 1262

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA----RFSKPEKLAD 1186
             +DSG + D    V  +IM   +++LS+ + K P+  LLE   ++      FSK  K   
Sbjct: 1263 LVDSGYNYDKTSAVVLDIMSKVLDQLSLDMAKDPVSLLLEWVAQHGCREISFSKNRKF-- 1320

Query: 1187 GRRVRVTVEVFGKGSYKGI-GRNYCIAKCTAAKCALKHL 1224
                 V +EV GK     I   +  +AK  A++ AL  L
Sbjct: 1321 NYDAGVVLEVHGKQVVGPIVASSPGVAKFIASERALSIL 1359



 Score = 42.4 bits (98), Expect = 1.9,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 11/97 (11%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLK-RSVT--G 58
           DNA+ ++N  CA +P D FT       I +        F   +RLP + PL+ R +   G
Sbjct: 569 DNALSLINHLCALIPRDSFTEAYKPQFIGD--------FQSRMRLPASLPLQPRDLVYLG 620

Query: 59  HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
           +   +K  A R  A +A + L +L   D+ L+PV+ E
Sbjct: 621 YPKRSKQEAKRSVAFQAVKRLLKLNVFDDYLLPVSSE 657


>gi|393220706|gb|EJD06192.1| hypothetical protein FOMMEDRAFT_145449 [Fomitiporia mediterranea
            MF3/22]
          Length = 1473

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 110/400 (27%), Positives = 180/400 (45%), Gaps = 66/400 (16%)

Query: 777  TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
             G + +RLET+GDS LK ++ ++++  +PN HEG+L+ L+   VSN  L    K+ V  E
Sbjct: 974  AGFNNQRLETMGDSVLKLSVVVYIFNAFPNRHEGQLTALKENSVSNRLLLARAKE-VHLE 1032

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
              + ++      W                E     SL  C       ++  E++      
Sbjct: 1033 RFLTSENRSMRTWR--------------FERSSVTSLGTC-------KIGSEEIA----- 1066

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
                                 +   + P +S+ DC+EA +GA  +  G   AL   + LG
Sbjct: 1067 ---------------------LAHRTFPRRSLQDCMEASLGAAYVAGGLNFALQTGTALG 1105

Query: 957  LKVIPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            L    P   PE   L++ +     F K +E + Y F++   L++A+ H S+       CY
Sbjct: 1106 LCFGGPTPWPERYPLTEFVPPAALFGKLQEDLQYTFRNGKLLVEAVKHPSFDFLENYPCY 1165

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKH 1073
            QRLEFLGDA+++ ++T +LY      + G ++  R+  + N   A+LAV RL  H +   
Sbjct: 1166 QRLEFLGDAVIELVVTTYLYNKFPGANSGQMSWARARAICNTTLAALAVNRLSLHKYLLA 1225

Query: 1074 LSPGLHEVIQRFVKMQAE---NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
                L E + + V++ +     D +LN   Y            + PK LGD+FESV GA+
Sbjct: 1226 NCVELSEDVAKEVEILSAASYEDVSLNDWRY------------DPPKVLGDIFESVIGAV 1273

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLE 1170
            ++DSG        +  E+MK  +  L   +P  P+  LL+
Sbjct: 1274 FVDSGFDYTITAPIIEELMKDVLVLLHPDIPYDPVSRLLQ 1313



 Score = 46.6 bits (109), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 23/68 (33%), Positives = 40/68 (58%), Gaps = 5/68 (7%)

Query: 766  SFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL 825
            SFDF   LEN+  P  +RLE +GD+ ++  +T +LY  +P  + G++S  R++ + N  L
Sbjct: 1155 SFDF---LENY--PCYQRLEFLGDAVIELVVTTYLYNKFPGANSGQMSWARARAICNTTL 1209

Query: 826  FKLGKQKV 833
              L   ++
Sbjct: 1210 AALAVNRL 1217


>gi|443925066|gb|ELU43989.1| type III restriction enzyme [Rhizoctonia solani AG-1 IA]
          Length = 1442

 Score =  144 bits (364), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 134/527 (25%), Positives = 219/527 (41%), Gaps = 72/527 (13%)

Query: 655  IDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQ---PVHIVRQSFDNAS 711
            +D+   +   E V + + +L  + G   L+K     + T K +Q   P H+ R S     
Sbjct: 883  LDIPEGDHWLELVSISKAQLQSHNGLYGLVKITGSEQPTAKPSQIVTPSHMARIS----P 938

Query: 712  NPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQP 771
             P+    I+T +   + ++     ++   +             I+R    P +   +   
Sbjct: 939  IPADIVRIVTHLPNLLGQMTVLFRIDSAKE-------------ILRTNGVPLELLLEALT 985

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
                  G   +RLETIGDS LK ++   L+  Y   HEG+LS ++   VSN NL ++G+Q
Sbjct: 986  LPSVQAGFDYQRLETIGDSVLKVSMCTHLFIKYQGHHEGQLSAMKDSVVSNANLMRVGRQ 1045

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                  +I      R  W PP                           P + E   +   
Sbjct: 1046 SPLSRFLITGSMPTRRTWSPPAS-------------------------PTISETQDDSGE 1080

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            +    +  D D        S   +   + H+   KS+ADC E+ +GA  +  G   AL  
Sbjct: 1081 QDDSNEQKD-DSNEQKENDSKGEFEKTSFHT---KSLADCTESTLGATYLSRGVEAALEV 1136

Query: 952  MSWLGLKVIPPVTNPESKHLS---DVLLDG------FDKFEESINYRFKDKSYLLQAMTH 1002
               LGL    P+      HL    DV          F   EE + Y+FK+ S + +A TH
Sbjct: 1137 GEALGL----PLGGTTPWHLRREVDVFARKSEITMLFAPVEEKLGYKFKNASLVAEAFTH 1192

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
             +Y L+     Y RLEFLGD++ D  + + +Y      +PG ++  RS LVN   F  LA
Sbjct: 1193 TAYDLSQ-GPSYNRLEFLGDSLFDLYVVKFMYLKFPKMTPGQMSWARSRLVNASTFGKLA 1251

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
            V L  H      S  L + +  F   Q   + +L +   +          I+ PKA+ D+
Sbjct: 1252 VGLELHKHILTSSANLQKAVASFA--QEVEEISLEEILQI-------CWKIDAPKAISDV 1302

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            FE++ GAIY+DS  +L+  ++  + +M + +E ++  +   P  EL+
Sbjct: 1303 FEAIFGAIYVDSSFNLELTFEHIHRVMANIMEYVTPVMQGDPTSELV 1349


>gi|449532911|ref|XP_004173421.1| PREDICTED: endoribonuclease Dicer homolog 2-like, partial [Cucumis
            sativus]
          Length = 307

 Score =  144 bits (363), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 109/326 (33%), Positives = 152/326 (46%), Gaps = 59/326 (18%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDSFLKYA    L+ T+ N HEG L+  + + VSN  L + G +      +    F
Sbjct: 19   LETLGDSFLKYATGQHLFRTFQNDHEGLLTLKKDRIVSNAALRRRGCEHKISGFIRDEAF 78

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE---LSPEKVLEIIKQKCVD 900
            +P+ NW  PG                     +   +  L+E    S  KV    K+K   
Sbjct: 79   DPQ-NWDIPG---------------------DTHEVYQLREEVLFSGRKVYVQRKRK--- 113

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV- 959
                                  I  K IAD VEALIGAYL   G + A+ F++ +G++V 
Sbjct: 114  ----------------------IKSKRIADVVEALIGAYLSTGGEKAAMQFLNRIGIEVN 151

Query: 960  --IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRL 1017
                P   P    +  ++  G    E  + Y F D+S LL+AMTH SY L  +  CYQRL
Sbjct: 152  FDFVPYERPFRVDVHKLINVG--HLESLLKYTFNDRSLLLEAMTHGSYMLPEIPRCYQRL 209

Query: 1018 EFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPG 1077
            EFLGD++LDY IT HLY      +P  LTD+RSA V+N  ++  A++   H    H S  
Sbjct: 210  EFLGDSVLDYAITVHLYNKYPGMTPELLTDMRSASVSNDCYSRTALKAQLHKSILHCSHD 269

Query: 1078 LHE----VIQRFVKMQAENDFTLNQE 1099
            LH+     +Q F  + +E  +    E
Sbjct: 270  LHKHISSAVQNFETLSSEATYGWESE 295



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 21/41 (51%), Positives = 27/41 (65%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
           +RLE +GDS L YAIT+ LY  YP +    L+ +RS  VSN
Sbjct: 207 QRLEFLGDSVLDYAITVHLYNKYPGMTPELLTDMRSASVSN 247


>gi|195996287|ref|XP_002108012.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
 gi|190588788|gb|EDV28810.1| hypothetical protein TRIADDRAFT_52058 [Trichoplax adhaerens]
          Length = 915

 Score =  142 bits (359), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 143/513 (27%), Positives = 220/513 (42%), Gaps = 99/513 (19%)

Query: 745  KSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTY 804
            K PG S    +   TS  +D       D  NH     +RLE +GDS+LK+  T   +   
Sbjct: 462  KRPGPSVSMLLQALTSLSAD-------DFFNH-----ERLEILGDSYLKFITTADYFFRN 509

Query: 805  PNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETAL 864
            PN+ EG +S +R+  VSN +L +  K K        T F+ +  WLPPG+       T +
Sbjct: 510  PNMKEGAMSLMRAINVSNSHLSRTSKLKGLTLYQFNTPFKLKQ-WLPPGF-------TCI 561

Query: 865  IEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIP 924
                      N ++   L + S ++  E  KQ            V SV            
Sbjct: 562  RNNA------NLVANNMLTDGSKQRDSESFKQ------------VMSV------------ 591

Query: 925  DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV-------------TNPESKHL 971
             K+I+D VE L+G Y +  GP  A   + W+GL + P V             T  E   L
Sbjct: 592  -KNISDTVEGLVGVYSLASGPVDAARLLPWIGLDIDPNVLIEKDKSVNFEIPTTDEDIQL 650

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
            S  +L   D       Y+F +  +L  A TH+S      ++ YQRLE+LGDAIL+YL+  
Sbjct: 651  SSCILRNTD-------YQFNNFYWLRIAFTHSS----VASENYQRLEYLGDAILEYLLIE 699

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH-HFFKH--LSPGLHEVIQRFVKM 1088
             +Y  +    PG ++  +S +  N  F+ +A+   F+ H   H  L   + + IQ F ++
Sbjct: 700  FVYCRKPYFGPGKISHFKSVMTRNQTFSLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEI 759

Query: 1089 QAEN---------DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
              +N             N  Y L      +    ++PK   D+FE+   AIYLD G  L 
Sbjct: 760  LLDNHQDDHQPDIGHFANLAYQLYTSNRYQ----KLPKVCADVFEAFIAAIYLDCGKKLR 815

Query: 1140 TVWKVYYEIMKSEIERL--SVSVPKSPIRELLELEPENARFS---KPEKLADGRRVRVTV 1194
            TVWKV Y++++  +  +   V    S I ++    P   R+    +       RR+ +  
Sbjct: 816  TVWKVVYKMVQRILADILNDVGGLTSTIHDMF---PNRIRYQVIKRSNSSKKHRRMFLDH 872

Query: 1195 EVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
               G  + +GIG +   AK  A +  L HL+ +
Sbjct: 873  PKLGMLTSEGIGTSNTSAKDDAIRNMLSHLECS 905



 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 96/354 (27%), Positives = 151/354 (42%), Gaps = 57/354 (16%)

Query: 121 KRRQFYHKR------MASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPEN 174
           KRRQ  HKR      +A   T+       P Y+  +   L  P         +K+     
Sbjct: 13  KRRQQLHKREVFNAKVADVITSNEYKPGEPYYVVEITTLLEHPFQLVNGAIVQKL----- 67

Query: 175 SPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKV 234
                 ILT + +PK+    IFT  G+  V+    +K + L+EE L N   F  +LF  V
Sbjct: 68  --STYGILTKQQLPKLPRIIIFTPMGKAHVNFIAREKPLFLTEEELDNCEKFHRFLFENV 125

Query: 235 LKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMT-----LISEHH------NDVI 283
           +K +K    F  N S   Y +VP   + E   + ++ +T     L +E++       +VI
Sbjct: 126 IKTRKDTR-FIKNESIKYYLVVPLRENGE---LHYELITSCINFLRNENYPNRQVCKEVI 181

Query: 284 QDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343
              P +               VV P Y    +   + +   +++  P S F   T+   T
Sbjct: 182 LQFPHQ--------------VVVKPSYSLNSQSLNWMLIRKVSDATPMSEFHD-TSIAAT 226

Query: 344 FEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL 403
           F +YY  +Y + I + EQ L+ +       N L   +   + + L + S+++        
Sbjct: 227 FYDYYKNQYSIDISDKEQKLVCLRKIPSNNNMLKKFH---RILTLTSKSKQSPH------ 277

Query: 404 GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLG 457
                 VPEL  IHP  AS +  +V LPSIL+R+ +LL  DE+R  +A E GLG
Sbjct: 278 -----FVPELLAIHPLSASRFMTTVCLPSILFRVESLLSVDELRLKIARETGLG 326


>gi|195995859|ref|XP_002107798.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
 gi|190588574|gb|EDV28596.1| hypothetical protein TRIADDRAFT_51673 [Trichoplax adhaerens]
          Length = 1418

 Score =  142 bits (358), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 112/403 (27%), Positives = 183/403 (45%), Gaps = 80/403 (19%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            +++ IG  F+K  + + LY T P+ +   L+  R +Q S + LF L  +      +I+  
Sbjct: 1052 KIKYIGKVFIKLVLAVNLYQTCPDDNSYALTMKRRQQSSEFYLFNLAAKTNIPSYIISKP 1111

Query: 843  FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD 902
            F     W+PPG+                                          +C D D
Sbjct: 1112 FNQLKCWIPPGF--------------------------------------TFSIRCKD-D 1132

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP- 961
             + D  +        +T + +  KSIA+C+ A++GA L        L F+ WLG  + P 
Sbjct: 1133 SSSDSALAERTIIESITDNFLSVKSIAECISAIVGALLFPDNETEGLNFLKWLGFAIEPF 1192

Query: 962  -------PVTNPESKHL-----SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
                    V N +  H+     S   L+   KFEE++ Y+F +  YL+ A TH+S  F +
Sbjct: 1193 SSISNGFDVWNEKITHMIEESNSQSWLEKLHKFEENLGYKFINIDYLILAFTHSSSEFGD 1252

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL-RSAL-----VNNIIFASLA 1062
            +    Y++LEF+GD+IL+YL+ ++L+         T  D+ RS       ++N ++  L+
Sbjct: 1253 SFN--YEKLEFVGDSILNYLVIKYLF-------LATDQDITRSKFFYGIAISNEVYGLLS 1303

Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAE---------NDFTLNQEYYLMEGECDEAEDI 1113
                FHH F + SP + E+I  F K  A+         N    +  Y +     D+  D 
Sbjct: 1304 YAYNFHHLF-YQSPFVKEMILGFEKKTADLLEGGSIPRNGNKHDWVYTIFSKSIDD--DF 1360

Query: 1114 EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
             +PK L D+FES+A AIY DSG +L TVW +Y  ++K  +++L
Sbjct: 1361 SIPKELADVFESLAAAIYFDSGQNLSTVWNIYSNLLKPFLDKL 1403



 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 183/428 (42%), Gaps = 71/428 (16%)

Query: 49   NSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVP 108
            N P K ++ G  M +K +A + +A+EAC+ L+E+ E+ ++L              EP V 
Sbjct: 642  NPPEKTTIEGPMMQSKKIAKKASALEACKFLHEVGEITDNL--------------EPNVG 687

Query: 109  KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPC------YLYAVKMKLTCPIPDEQ 162
            K      Y  S  + Q+  K+    F +   +++ P       YL+ +K++L       +
Sbjct: 688  K------YHQSIDKSQY--KQFPIKFPD---NLSMPIEDGDNFYLHMIKIEL-------K 729

Query: 163  NKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSN 222
            N     I     S     I  TK + ++    + T CG++  S++ +   +  S + LS 
Sbjct: 730  NSTIESIDTVSCSSDFGLICKTK-LHEIEPTYLQTSCGDILFSLQSLAVPMHYSCDELSL 788

Query: 223  TLIFMDYLFTKVLKLKKYL-MLFDPNCSENSYFIVP---TVSDSEQIVIDWKFMTLISEH 278
               F++YLFT +        +++DP  S   Y IVP     S      I+++ M  + + 
Sbjct: 789  ISKFVEYLFTNITPCSTITDLIYDPTNSYAKYMIVPLNYAKSSRSMYSINFELMATLLK- 847

Query: 279  HNDVIQDIPEKE---RENFVFDESKFRDAVVMP----WYRNQFEPTYFYVAEIMTNVHPR 331
                    P K      N         D +++     W  NQ +   + +  I  ++ P 
Sbjct: 848  --------PRKYWPFASNLGDGCKNVNDLLIVKNYGHWVTNQVD--VYALRNICYDLSPL 897

Query: 332  SMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATT 391
            S FP  T+   T++ YY  KY  +I+N  QPL  V      L+      V+   I+    
Sbjct: 898  SRFP--TDKRLTYKAYYHRKYHTRIENSNQPLFAVK----TLHRFPVALVHENCISPCNN 951

Query: 392  SEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
            + E+++    S      LVPELCL+HPF AS+W  S  LP  LY++    LA E+   + 
Sbjct: 952  TTESKK----SNSGFVHLVPELCLVHPFSASMWMLSQFLPLTLYKIEKNCLAYEMIDYIQ 1007

Query: 452  SEIGLGKV 459
                L KV
Sbjct: 1008 CASILKKV 1015


>gi|256600044|gb|ACV04762.1| Dicer [Patiria miniata]
          Length = 663

 Score =  139 bits (350), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 73/149 (48%), Positives = 99/149 (66%), Gaps = 6/149 (4%)

Query: 332 SMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATT 391
           S FPS  + Y+ F +YY  +Y +Q+ N +QPLLDVD  S RLN LTPRY+N KG  L  +
Sbjct: 6   SPFPS--DKYEKFIDYYFERYDIQVSNYQQPLLDVDCMSSRLNLLTPRYLNHKGKALPIS 63

Query: 392 SEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVA 451
             ++++     L KKQ LVPELC I+P PASLWRK+V LPSILYRLN+LL+A+E+R  ++
Sbjct: 64  RMQSKKNY---LQKKQYLVPELCYIYPIPASLWRKAVCLPSILYRLNSLLVAEELRVQIS 120

Query: 452 SEIGLGKVIL-DEKVEWPPFNFGWKMKKL 479
            E G+G   L  +   +    FGW+  +L
Sbjct: 121 QEAGVGMAELPADPYPFANMTFGWEGLEL 149



 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 46/75 (61%), Positives = 58/75 (77%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GDSFLK A+TI+LYCTYP  HEGKLS++RSKQVSN+NL++LGK+K  G  M   
Sbjct: 377 ERLEMLGDSFLKQAVTIYLYCTYPRRHEGKLSYMRSKQVSNFNLYRLGKRKDIGRKMQVA 436

Query: 842 KFEPRDNWLPPGYFV 856
            F+P  NWL   +FV
Sbjct: 437 LFDPAINWLAACFFV 451



 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 36/67 (53%), Positives = 48/67 (71%)

Query: 905 VDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVT 964
           VDM     +PY + TQHS+ DK++AD VEA+IG YLI CG R AL+ MSW GL+V+P + 
Sbjct: 562 VDMGDLPELPYEIHTQHSLSDKNLADSVEAIIGCYLISCGFRSALIVMSWFGLRVLPQIP 621

Query: 965 NPESKHL 971
           + ES+ L
Sbjct: 622 DDESRGL 628


>gi|115292171|emb|CAK32533.1| putative dicer-like protein [Mucor circinelloides]
          Length = 1529

 Score =  139 bits (349), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 111/395 (28%), Positives = 179/395 (45%), Gaps = 89/395 (22%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK+  + +++ T P  +E +L+  R + +SN  LFK   Q    E  I +
Sbjct: 1080 QRLEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYE-YICS 1138

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +  PR  + PP Y                              L  +   E+IK      
Sbjct: 1139 QNLPRRFYRPPNY------------------------------LCKDDSAEMIKS----- 1163

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC-GPRG----ALLFMSWLG 956
                            +T H + DK++AD VE+ +GA  + C G +     AL       
Sbjct: 1164 ----------------LTYHKLSDKTLADVVESTLGASYLSCLGDKKQGDQALNEALHTT 1207

Query: 957  LKVIPPVTNPE--------------SKHLS----DVLLD---GFDKFEESINYRFKDKSY 995
             +++ P+   E              +K L     D L D      K    + Y F++++ 
Sbjct: 1208 QRLLVPMQKMEQWSDFQTIYRDERDNKQLKMAAYDPLFDQRIDIKKVSRILGYEFQNEAL 1267

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            + +A+THAS   N+   CYQRLEFLGDA+LD+ +T +L+E      PGTL DLR + VNN
Sbjct: 1268 IAEALTHAS-VTNSSVPCYQRLEFLGDAVLDFCVTNYLFEKYHTAPPGTLHDLRKSSVNN 1326

Query: 1056 IIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV 1115
             I + L ++LG H   +H S      +++F ++   +      EY+L         +   
Sbjct: 1327 DILSVLCIQLGLHVHIRHFSTTFPSAVKQFQELVVASQ-DEKGEYWL---------NFNP 1376

Query: 1116 PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
            PK L D+ ES+ GA+++D+G +LD V  ++  ++K
Sbjct: 1377 PKVLSDVVESLIGAVFVDAGFNLDPVLGLFDRLLK 1411



 Score = 67.0 bits (162), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 106/501 (21%), Positives = 206/501 (41%), Gaps = 104/501 (20%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPI----------ITISEIKEDD--SI----------MF 40
            NAI ++  YCA LPSD F    P+          +++ EI+  D  SI          +F
Sbjct: 606  NAIALIYHYCATLPSDNFCNFKPVYEYEDLTNYGLSLEEIEALDLPSINPTTVAGKKNIF 665

Query: 41   TCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE----F 96
             C++ LPIN+ +++     +   K  A    +++AC  LY+  ++D+ L+P +K      
Sbjct: 666  GCTLTLPINARIQQFRAYDR--AKDDAKARVSLQACVALYKAGDIDSHLVPKSKTQRRVL 723

Query: 97   INLYENTEPVVPKTPEIETYPDSTKRRQFYHKRM-----ASCFTNCRPSVNTPCYLYAVK 151
            ++L E  +       +      S  R   Y K+           +   +   P ++  + 
Sbjct: 724  MDLAEEKD-------DNGKLIGSRGRENLYKKKQPLFWQGDDLVDGTDARLGPYWISLIG 776

Query: 152  MKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDK 211
            + L+           ++   P   P  + ++T K +P + S  ++      +V +    +
Sbjct: 777  IDLS----------AQQQQLPPYRP--MCLITKKPLPAIPSITLYNNNKPFQVHLTSQSE 824

Query: 212  NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENS--YFIVP-TVSDS---EQI 265
             +  +++   + L+   + F K +  K +       C++N+  Y + P  +SD+   +  
Sbjct: 825  ALSFNKQTQVDDLMEYTFSFLKCITNKTF------TCAKNNIEYLVAPLIISDTAAQQTA 878

Query: 266  VIDWKFMT-LISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEI 324
             IDW  +T  I++ +      +P     N + D        ++    +Q +  YF V  +
Sbjct: 879  KIDWVEITKSIADKY------LPVNLHSNGILD-------TILVDTSDQKKRQYF-VQSV 924

Query: 325  MTNVHPRSMFPS------------RTNTYQTFEEYYSLKYGL--QIQNLEQPLLDVDHTS 370
              ++ P S  P             R + Y TF++YY  +  L  +I ++ QPL+ V    
Sbjct: 925  QHDMTPLSPVPDAVSTSNGLAKKLREHGYATFKDYYEDQEFLSKKITDMAQPLIQVHRVP 984

Query: 371  CRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSL 430
               +F   R            S   ++  RE       LVPELCL +P  AS+++    +
Sbjct: 985  KNQSFRQVR-----------GSSMMKKRDREPESVVHWLVPELCLQYPISASVYQTLQLV 1033

Query: 431  PSILYRLNALLLADEIRTAVA 451
            P I+  ++A+LL  + + A+ 
Sbjct: 1034 PDIMMHIDAVLLMHDAKKALG 1054



 Score = 43.9 bits (102), Expect = 0.59,   Method: Compositional matrix adjust.
 Identities = 32/115 (27%), Positives = 59/115 (51%), Gaps = 8/115 (6%)

Query: 957  LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            L+++P +      H+  VLL    K    ++ R KD  Y+L+A T +S     L   YQR
Sbjct: 1030 LQLVPDIM----MHIDAVLLMHDAKKALGLSGRMKD-PYMLEAFTASS---AGLEKDYQR 1081

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            LEFLGD++L ++ + +++      +   LT+ R  +++N      A++L  + + 
Sbjct: 1082 LEFLGDSVLKFITSTYVFVTLPISNEFELTESRMRMISNTALFKSAIQLRLYEYI 1136


>gi|356571230|ref|XP_003553782.1| PREDICTED: endoribonuclease Dicer homolog 2-like [Glycine max]
          Length = 756

 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 139/465 (29%), Positives = 207/465 (44%), Gaps = 83/465 (17%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GDS+LKY ++  L+ T  N  EG LS  R   +SN  LFK G  +     +   KF
Sbjct: 352  LETLGDSYLKYIVSQQLFKTNQNDREGALSDKRKNIISNDVLFKYGCTRPLPGFIRKDKF 411

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +P+  W  PG                     N + L   K  S    + + K + +DL  
Sbjct: 412  DPK-QWDVPG------------------DKSNSILLLKQKLDSSRTRVYVRKTREIDLGI 452

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV---I 960
                                    IAD VEALIGA++     + AL F++W+G+ V   I
Sbjct: 453  ------------------------IADVVEALIGAFISTEDEKAALSFINWIGINVDTNI 488

Query: 961  PPVTNPESKHLSDVLLDGFDK---FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRL 1017
             P  N   +H+S +  +   K    +  +NY FKD   L++A+TH+S     +  CY+RL
Sbjct: 489  MPYEN--ERHISIIAPEELVKAKLLKSRLNYSFKDPYLLVEALTHSSGKRPEIRTCYERL 546

Query: 1018 EFLGDAILDYLITRHLYED--ERAHSPGTLTDLRSALVNNIIFASLAVRLGF-HHFF--K 1072
            EFLGDA+LDY+IT H Y++      S    T++RS  VNN  +A  A++     H     
Sbjct: 547  EFLGDAVLDYVITMHFYKEYSNDKFSAEFFTNMRSISVNNECYALSAIKAKLDEHILCDS 606

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
             +   + + ++    +  E+ F    E Y  +              L D+ ES+AGAI++
Sbjct: 607  VVKNNIAQTMEGVKNLSLESTFGWELETYFCQ-------------VLADVIESIAGAIFV 653

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLELEPENARFSK--PEKLADGR 1188
            DSG   + V    ++ +K  +E L    +  + PI EL EL  +     K  P    +G 
Sbjct: 654  DSGYKKEVV----FQSIKPLLEPLVTPETARRHPISELHELCQKKGYKMKVYPPVRVNG- 708

Query: 1189 RVRVTVEVFGKG-SYK----GIGRNYCIAKCTAAKCALKHLKSAK 1228
               VT+EV   G +YK        N   A+  AAK  LK +K  K
Sbjct: 709  ETSVTIEVKTNGITYKNNPPAKASNNDTARKLAAKDVLKQIKICK 753


>gi|384500232|gb|EIE90723.1| hypothetical protein RO3G_15434 [Rhizopus delemar RA 99-880]
          Length = 1239

 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 110/393 (27%), Positives = 170/393 (43%), Gaps = 94/393 (23%)

Query: 773  LENHTGPSP------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
            LE +T PS       +RLET+GDS LK+  TI LY  +P  +EG+L HLR + V N  L+
Sbjct: 781  LEAYTMPSASMEMDYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVVCNRALY 840

Query: 827  KLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS 886
            +  K+  F   + +  F  R +W PP                F ++  N  ++ +LK   
Sbjct: 841  RAAKRLKFYRYVTSQAFN-RRHWRPPH---------------FTSTADNADTMESLK--- 881

Query: 887  PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
                                             +H + DK++AD VEA +GA  +  G  
Sbjct: 882  ---------------------------------KHKLSDKTLADIVEASLGAAYLSSGLE 908

Query: 947  GALLFMSWLGL-------------------KVIPPVTNPESKHLSDVLLDGFDKFEESIN 987
            G L     + +                   K +PP    ++  + D+      K +  ++
Sbjct: 909  GCLHTAIQMQIPFDQIEKWSDFNVAFEESRKAVPPRAEVKALRMLDL-----PKIQVLVD 963

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
              F     +++A+THAS   N+ + CYQRLEFLGDAILD+L+ R+LY       PG +T 
Sbjct: 964  REFNKPLLVVEALTHAS-LPNSTSPCYQRLEFLGDAILDFLVIRYLYTKYPDAEPGQITT 1022

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ--EYYLMEG 1105
            L+ + VNN +   + +  G H    H S  L   I    +   E   T     EY+    
Sbjct: 1023 LKDSCVNNHVLGIICLNNGLHKHIIHYSGKLVRAINTLEEEVQELKDTGKAVGEYW---- 1078

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                  D+ +PK L D+ ES+ GA+++D+   L
Sbjct: 1079 -----ADMNIPKVLSDVVESMLGAVFVDAKFDL 1106



 Score = 62.0 bits (149), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 70/280 (25%), Positives = 127/280 (45%), Gaps = 36/280 (12%)

Query: 179 LAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLK 238
           + ++T K   ++    +F +     V++ +I   +VL +E +   L+  DY+    + L 
Sbjct: 516 MCLVTKKPFIELPQLKLFHKNQPFVVNLRVIKTELVLDKECI---LLLSDYM----MSLM 568

Query: 239 KYLMLFDPNCS--ENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVI---QDIPEKEREN 293
           K LM  D +C   +  Y+IVP + + EQ     KF  L ++   +++   Q    KER N
Sbjct: 569 KELMNKDYHCPVVDIPYYIVPLIKNCEQA----KFEDLSADELKNMVDWDQVNAFKERTN 624

Query: 294 FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS----RTNTYQTFEEYY- 348
                S+  D        N      + + ++  +++P+S  PS    R   Y TF +YY 
Sbjct: 625 KPLILSEMSDPSDFIIIDNSDYSLRYLITDVRYDMNPQSAVPSGFDIREAGYPTFIDYYR 684

Query: 349 SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQL 408
            L     I + EQP+++V+     ++FL P      G N+   S+   R           
Sbjct: 685 DLGDKFVIHDYEQPMIEVERLKRGMDFLHP------GGNMPARSKGPAR---------TW 729

Query: 409 LVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRT 448
           +VP+ C  +   AS++   + +PSI+ R+++LLL  + R 
Sbjct: 730 VVPQFCTQYFVNASVYIAMLMIPSIMTRIDSLLLCYDSRA 769



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 13/129 (10%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           NA+ +++RYC+ LPSD F  L PI       E     + C + LP N+ +++ V    + 
Sbjct: 262 NAVPLIHRYCSSLPSDSFCVLKPIFEHIAAGEG----YKCILTLPSNAAIQK-VESPFVR 316

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMP--VTKEFINLYENTEPVVPKTPEIETYPDST 120
           +K LA  + A++AC  L  L  LD  L+P  + KE +        + P+  E      S 
Sbjct: 317 SKDLAKALVALQACSELKRLDALDRHLLPRNIKKEILG------EMAPQYDENGYIIGSR 370

Query: 121 KRRQFYHKR 129
           +R   Y KR
Sbjct: 371 RRHGLYEKR 379



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 48/170 (28%), Positives = 73/170 (42%), Gaps = 27/170 (15%)

Query: 995  YLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVN 1054
            Y+L+A T  S    ++   Y+RLE LGD++L ++ T  LY +    + G L  LR  +V 
Sbjct: 779  YMLEAYTMPS---ASMEMDYERLETLGDSLLKFIATIRLYINFPFSNEGELHHLRIRVVC 835

Query: 1055 NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIE 1114
            N      A RL F+               R+V  QA N       ++      D A+ +E
Sbjct: 836  NRALYRAAKRLKFY---------------RYVTSQAFNRRHWRPPHF--TSTADNADTME 878

Query: 1115 -------VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
                     K L D+ E+  GA YL SG+       +  +I   +IE+ S
Sbjct: 879  SLKKHKLSDKTLADIVEASLGAAYLSSGLEGCLHTAIQMQIPFDQIEKWS 928


>gi|134285026|gb|ABO69574.1| dicer1 [Gobiocypris rarus]
          Length = 184

 Score =  137 bits (344), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 104/179 (58%)

Query: 79  LYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCR 138
           L+++ ELD+ LMPV KE +   E  +    +   +   P STKRRQ Y K +  C   C 
Sbjct: 1   LHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRGCY 60

Query: 139 PSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTR 198
           P    PCYLY + M LT P+PDE N R RK++PPE++ +   ILT K IP++  FP++TR
Sbjct: 61  PVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTR 120

Query: 199 CGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP 257
            GEV +SIEL      L  E L        Y+F+ +L+L+K  + F P  ++++Y ++P
Sbjct: 121 SGEVTISIELQKSGFTLRAEQLELITRLHQYIFSHILRLEKPALEFKPVEADSAYCVLP 179


>gi|222629185|gb|EEE61317.1| hypothetical protein OsJ_15421 [Oryza sativa Japonica Group]
          Length = 1632

 Score =  136 bits (342), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/314 (32%), Positives = 149/314 (47%), Gaps = 43/314 (13%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +R E +GD+FLKY +    + TY  + EG+L+  RS  V+N +L++L  +K     + 
Sbjct: 1009 SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1068

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
              +FEP        +F P      +        L          ++ P+      ++ C 
Sbjct: 1069 DQQFEPTQ------FFAPGRPCKVVCNTDVEVRLHQM-------DIHPDN-----RENC- 1109

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
            +L CT              + H +  K IAD VE+LIGA+L+E G + A  F+ W+G+ V
Sbjct: 1110 NLRCTR-------------SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV 1156

Query: 960  IPPVTNP------ESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                 NP      +S  ++  L+D  D    EE I Y+FK K  LLQA  H S+  ++  
Sbjct: 1157 --DFNNPALYRVLDSSSINLSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-G 1213

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQ+ EFLGDA+L+Y+IT +LY       PG +TDLRS  V N   A  AV    H   
Sbjct: 1214 GCYQKTEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHL 1273

Query: 1072 KHLSPGLHEVIQRF 1085
               S  L   I +F
Sbjct: 1274 IKDSNHLTSAISKF 1287



 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 66/180 (36%), Positives = 89/180 (49%), Gaps = 25/180 (13%)

Query: 978  GFDKFEESIN-YRFKDKSYLLQAMTHASYFL---NTLTD------CYQRLEFLGDAILDY 1027
             +   E+SI+ +  KD ++L  A++    ++   N+  D      C +RLEFLGDA+L+Y
Sbjct: 1261 AYAAVEKSIHKHLIKDSNHLTSAISKFEMYVKLSNSEKDLLEEPACPKRLEFLGDAVLEY 1320

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            +IT +LY       PG +TDLRS  V N   A  AV    H      S  L   I +F  
Sbjct: 1321 VITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKDSNHLTSAISKF-- 1378

Query: 1088 MQAENDFTLNQEYY--LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                       E Y  L   E D  E+   PKALGD+ ES  GA+ LDSG +L+ VWK Y
Sbjct: 1379 -----------EMYVKLSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKNY 1427



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 25/59 (42%), Positives = 38/59 (64%)

Query: 781  PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            PKRLE +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L     +K   + +I
Sbjct: 1307 PKRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLI 1365



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 24/70 (34%), Positives = 40/70 (57%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
             P    H+G   ++ E +GD+ L+Y IT +LY TYP++  G+++ LRS  V N +L    
Sbjct: 1205 HPSFSQHSGGCYQKTEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAA 1264

Query: 830  KQKVFGESMI 839
             +K   + +I
Sbjct: 1265 VEKSIHKHLI 1274


>gi|167046028|gb|ABZ10545.1| dicer-like protein D [Trichoplax adhaerens]
          Length = 351

 Score =  135 bits (339), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 119/404 (29%), Positives = 180/404 (44%), Gaps = 84/404 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D  NH     +RLE +GDS+LK+  T   +   PN+ EG +S +R+  VSN +L +  K 
Sbjct: 4    DFFNH-----ERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKL 58

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            K        T F+ +  WLPPG+       T +          N ++   L + S ++  
Sbjct: 59   KGLTLYQFNTPFKLK-QWLPPGF-------TCIRNNA------NLVANNMLTDGSKQRDS 104

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            E  KQ            V SV             K+I+D VE L+G Y +  GP  A   
Sbjct: 105  ESFKQ------------VMSV-------------KNISDTVEGLVGVYSLASGPVDAARL 139

Query: 952  MSWLGLKVIPPV-------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQ 998
            + W+GL + P V             T  E   LS  +L   D       Y+F +  +L  
Sbjct: 140  LPWIGLDIDPNVLIEKDKSVNFEIPTTDEDIQLSSCILRNTD-------YQFNNFYWLRI 192

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A TH+S      ++ YQRLE+LGDAIL+YL+   +Y  +    PG ++  +S +  N  F
Sbjct: 193  AFTHSS----VASENYQRLEYLGDAILEYLLIEFVYCRKPYFGPGKISHFKSVMTRNQTF 248

Query: 1059 ASLAVRLGFH-HFFKH--LSPGLHEVIQRFVKMQAEN---------DFTLNQEYYLMEGE 1106
            + +A+   F+ H   H  L   + + IQ F ++  +N             N  Y L    
Sbjct: 249  SLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFANLAYQLYTSN 308

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
              +    ++PK   D+FE+   AIYLD G  L TVWKV Y++++
Sbjct: 309  RYQ----KLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348


>gi|167046018|gb|ABZ10540.1| dicer-like protein A [Placozoa sp. DMJ-2008]
          Length = 351

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 173/387 (44%), Gaps = 72/387 (18%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            +++ IG  F+K  + + LY T P+ +   L+  R +Q S + LF L  +      +I+  
Sbjct: 12   KIKYIGKVFIKLVLAVNLYQTCPDDNSYALTMKRRQQSSEFYLFNLAAKTNIPSYIISKP 71

Query: 843  FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD 902
            F     W+PPG+                                          +C D D
Sbjct: 72   FNQLKCWIPPGF--------------------------------------TFSIRCKD-D 92

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP- 961
             + D  +        +T + +  KSIA+C+ A++GA L        L F+ WLG  + P 
Sbjct: 93   SSSDSALAERTIIESITDNFLSVKSIAECISAIVGALLFPDNETEGLNFLKWLGFAIEPF 152

Query: 962  -------PVTNPESKHL-----SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
                    V N +  H+     S   L+   KFEE++ Y+F +  YL+ A TH+S  F +
Sbjct: 153  SSISNGFDVWNEKITHMIQESNSQSWLEKLHKFEENLGYKFINIDYLILAFTHSSSEFGD 212

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLY--EDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
            +    Y++LEF+GD+IL+YL+ ++L+   D+          +    ++N ++  L+    
Sbjct: 213  SFN--YEKLEFVGDSILNYLVIKYLFLATDQDITRSKFFYGIA---ISNEVYGLLSYAYN 267

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAE---------NDFTLNQEYYLMEGECDEAEDIEVPK 1117
            FHH F + SP + E+I  F K  A+         N    +  Y +     D+  D  +PK
Sbjct: 268  FHHLF-YQSPFVKEMILGFEKKTADLLEGGSIPRNGNKHDWVYTIFSKSIDD--DFSIPK 324

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKV 1144
             L D+FES+A AIY DSG +L TVW +
Sbjct: 325  ELADVFESLAAAIYFDSGQNLSTVWNI 351


>gi|167046016|gb|ABZ10539.1| dicer-like protein A [Trichoplax adhaerens]
          Length = 351

 Score =  134 bits (338), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 173/387 (44%), Gaps = 72/387 (18%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            +++ IG  F+K  + + LY T P+ +   L+  R +Q S + LF L  +      +I+  
Sbjct: 12   KIKYIGKVFIKLVLAVNLYQTCPDDNSYALTMKRRQQSSEFYLFNLAAKTNIPSYIISKP 71

Query: 843  FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD 902
            F     W+PPG+                                          +C D D
Sbjct: 72   FNQLKCWIPPGF--------------------------------------TFSIRCKD-D 92

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP- 961
             + D  +        +T + +  KSIA+C+ A++GA L        L F+ WLG  + P 
Sbjct: 93   SSSDSALAERTIIESITDNFLSVKSIAECISAIVGALLFPDNETEGLNFLKWLGFAIEPF 152

Query: 962  -------PVTNPESKHL-----SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
                    V N +  H+     S   L+   KFEE++ Y+F +  YL+ A TH+S  F +
Sbjct: 153  SSISNGFDVWNEKITHMIEESNSQSWLEKLHKFEENLGYKFINIDYLILAFTHSSSEFGD 212

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLY--EDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
            +    Y++LEF+GD+IL+YL+ ++L+   D+          +    ++N ++  L+    
Sbjct: 213  SFN--YEKLEFVGDSILNYLVIKYLFLATDQDITRSKFFYGIA---ISNEVYGLLSYAYN 267

Query: 1067 FHHFFKHLSPGLHEVIQRFVKMQAE---------NDFTLNQEYYLMEGECDEAEDIEVPK 1117
            FHH F + SP + E+I  F K  A+         N    +  Y +     D+  D  +PK
Sbjct: 268  FHHLF-YQSPFVKEMILGFEKKTADLLEGGSIPRNGNKHDWVYTIFSKSIDD--DFSIPK 324

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKV 1144
             L D+FES+A AIY DSG +L TVW +
Sbjct: 325  ELADVFESLAAAIYFDSGQNLSTVWNI 351


>gi|168046558|ref|XP_001775740.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672892|gb|EDQ59423.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 792

 Score =  134 bits (337), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 119/403 (29%), Positives = 173/403 (42%), Gaps = 95/403 (23%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GDS L +   + +Y  +P+     L   R   VSN NL+K G         +A   
Sbjct: 391  LELLGDSVLNFIGGVHMYIDFPSCTSELLHSYRHDLVSNRNLYKCG---------LACGL 441

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
                    PGY   + L T           W          + P   LE + QK  D   
Sbjct: 442  --------PGYIFAELLNT---------KTW----------VPPGPALEDLPQKSPD--- 471

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                               I  K++AD VEALIG   +      A+  M WL + +  P 
Sbjct: 472  ----------------GQVIGLKTLADVVEALIGVTFLHGDLNSAVKTMVWLQVPIPFPE 515

Query: 964  TNPESKHLSDV--LLDGFDKF--------EESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
              PE   ++D+  L++  + F        E+ I Y+FK KS LL A  +      T +  
Sbjct: 516  KIPEVI-IADIQELMEARNTFKDHDIVTLEKKIGYQFKCKSLLLSAFDYGDEVTFTQSGV 574

Query: 1014 ------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
                  +QRLEFLGD++LD+LI RH  +   A +P  L DLR A VN+  FA  A+R GF
Sbjct: 575  PRGSFQFQRLEFLGDSVLDFLIMRHFVQLYSAFNPEQLNDLRQATVNSENFACTAIRHGF 634

Query: 1068 HHFFKHLSPGLHEVIQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFE 1124
            HH+ K +SP L + I+ +   V  +  + F +                   PKA+GDL +
Sbjct: 635  HHYLKRMSPILRDEIELYAASVHREGGSPFGIPSR--------------ASPKAIGDLMQ 680

Query: 1125 SVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRE 1167
            ++AG+I LDS    D VWKV   ++        ++ PK+ +R 
Sbjct: 681  TLAGSILLDSNFDHDLVWKVLKPLLS------PLATPKTVMRH 717



 Score = 42.0 bits (97), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 70/176 (39%), Gaps = 31/176 (17%)

Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQ-TFEEYYSL 350
            N +F E    DAVV     N   P +  V+ I+ ++   S         Q ++ +YY  
Sbjct: 221 RNGIFQEHDLEDAVVT--CANNGLPCF--VSGILHDLSGSSFCSQSAGRKQISYSDYYFH 276

Query: 351 KYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLG------ 404
           +   +++  +QPLL                   KG  L       RR    S G      
Sbjct: 277 ECKYKLEYPDQPLL-------------------KGYRLVRAGNYVRRTSAVSNGDSVKPW 317

Query: 405 KKQLLVPELCLIH-PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           +   L PE+C++H      L R  + LPSIL+ L   L+A E+R  + S +   KV
Sbjct: 318 ETMELPPEVCILHVGLKGKLCRGGMRLPSILHSLEMSLVAAELRNNIGSPLSCFKV 373


>gi|315258243|gb|ADT91700.1| dicer-like protein 2 [Nicotiana attenuata]
          Length = 239

 Score =  134 bits (336), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 76/165 (46%), Positives = 95/165 (57%), Gaps = 3/165 (1%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKH--LSDVLLD 977
            +  I  K +AD VEALIGA+L   G   AL FM WLG+  I  V  P  +H  ++   L 
Sbjct: 63   RQKIKSKRVADVVEALIGAFLSSGGEVAALSFMKWLGVD-IDFVDAPTPRHFPMNAEKLV 121

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
                 E  ++Y+F D S L++A+TH SY L  +  CYQRLEFLGDA+LDY +T HLY   
Sbjct: 122  NVRYLESLLDYKFHDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYAVTAHLYFKY 181

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
               SPG +TDLRSA VNN  +A  AV+ G H    H S  L   I
Sbjct: 182  PGLSPGFITDLRSASVNNECYAQAAVKAGLHKHILHASQDLQRQI 226



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 19/41 (46%), Positives = 27/41 (65%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
           +RLE +GD+ L YA+T  LY  YP +  G ++ LRS  V+N
Sbjct: 159 QRLEFLGDAVLDYAVTAHLYFKYPGLSPGFITDLRSASVNN 199


>gi|167046030|gb|ABZ10546.1| dicer-like protein D [Placozoa sp. DMJ-2008]
          Length = 351

 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 118/404 (29%), Positives = 179/404 (44%), Gaps = 84/404 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D  NH     +RLE +GDS+LK+  T   +   PN+ EG +S +R+  VSN +L +  K 
Sbjct: 4    DFFNH-----ERLEILGDSYLKFITTADYFFRNPNMKEGAMSLMRAINVSNSHLSRTSKL 58

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            K        T F+ +  WLPPG+       T +          N ++   L + S ++  
Sbjct: 59   KGLTLYQFNTPFKLK-QWLPPGF-------TCIRNNA------NLVANNMLTDGSKQRDS 104

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            E  KQ            V SV             K+I+D VE L+G Y +  GP  A   
Sbjct: 105  ESFKQ------------VMSV-------------KNISDTVEGLVGVYSLASGPVDAARL 139

Query: 952  MSWLGLKVIPPV-------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQ 998
            + W+GL + P V             T  E   LS  +L   D       Y+F +  +L  
Sbjct: 140  LPWIGLDIDPNVLIEKDKSVNFEIPTTDEDIQLSSCILRNTD-------YQFNNFYWLRI 192

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A TH+S      ++ YQRLE+LGDA L+YL+   +Y  +    PG ++  +S +  N  F
Sbjct: 193  AFTHSS----VASENYQRLEYLGDATLEYLLIEFVYCRKPYFGPGKISHFKSVMTRNQTF 248

Query: 1059 ASLAVRLGFH-HFFKH--LSPGLHEVIQRFVKMQAEN---------DFTLNQEYYLMEGE 1106
            + +A+   F+ H   H  L   + + IQ F ++  +N             N  Y L    
Sbjct: 249  SLIAIAFQFYTHIRCHSKLKLDIMDSIQNFKEILLDNHQDDHQPDIGHFANLAYQLYTSN 308

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
              +    ++PK   D+FE+   AIYLD G  L TVWKV Y++++
Sbjct: 309  RYQ----KLPKVCADVFEAFIAAIYLDCGKKLRTVWKVVYKMVQ 348


>gi|41394385|gb|AAS02296.1| dicer [Oncorhynchus mykiss]
          Length = 197

 Score =  133 bits (334), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 73/191 (38%), Positives = 109/191 (57%), Gaps = 2/191 (1%)

Query: 84  ELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNT 143
           ELD+ LMPV KE +   E  +    +   +   P STKRRQ Y K +  C  +  P    
Sbjct: 1   ELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAIPECLRDSYPVPEQ 60

Query: 144 PCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVE 203
             YLY + M LT P+PDE N R RK++PPE++ +   ILT K IP++  FP++TR GEV 
Sbjct: 61  SYYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVT 120

Query: 204 VSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP--TVSD 261
           +S+EL      LS   L        Y+F+ +L+L+K  + F+P  ++++Y ++P   V D
Sbjct: 121 ISMELQKAGFTLSAVQLDLITRLHQYIFSHILRLEKPALEFNPTQADSAYCVLPLNVVED 180

Query: 262 SEQIVIDWKFM 272
           S  + +D+KFM
Sbjct: 181 SNTLDLDFKFM 191


>gi|328773741|gb|EGF83778.1| hypothetical protein BATDEDRAFT_85615 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1746

 Score =  130 bits (327), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 124/479 (25%), Positives = 207/479 (43%), Gaps = 88/479 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD  LK+ +  +L+ +Y +   G+LS + S  VSN NLF++ +Q      +   
Sbjct: 1316 ERLETLGDKVLKFGVAHYLHSSYQSYEVGQLSTILSGLVSNKNLFEIAQQHSLTGMLNTA 1375

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F+  ++W PP +      ET +  A  P +  +CL           +V    KQ     
Sbjct: 1376 PFQS-NSWTPPSFC----FETRIFVA--PTASVDCLD---------NRVFCGKKQ----- 1414

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-KVI 960
                                       +D +EAL+GAY +ECG   AL  M    L   I
Sbjct: 1415 ---------------------------SDFIEALLGAYFLECGVEAALHLMRTFRLINEI 1447

Query: 961  PP---------------VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
            PP               +++ ++  LS +  +  D  ++ ++Y F +   LL A+    Y
Sbjct: 1448 PPHCFRHGDTNKLHDHQISSMQNPILSRLDQETVDHVQQKLSYNFHNPELLLIALMTPFY 1507

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
            F+ +    ++RLEFLGDAI+D L+ R+ Y   +   P +L+ +  A V    F  + V L
Sbjct: 1508 FVKSK---FERLEFLGDAIMDILVARYFYRHYKHADPCSLSKMIQATVCKPAFCKILVSL 1564

Query: 1066 GFH-HFFK--HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
              H H  +   LS    E I  +       ++  N        + D+A  I+ PK L D+
Sbjct: 1565 KLHEHLLQSSQLSQHSKEAIVLYA------NYIQNSHSQHAFKQADKA--IDGPKVLCDV 1616

Query: 1123 FESVAGAIYLDSGMSLD----TVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
            FE +  AI++D+G +L+     ++   +  ++S I   +++ P  PIR+L          
Sbjct: 1617 FEVIVAAIFIDTGYNLERTRLVIFPYVHSFIQSNINLETITEP--PIRQLFAFVQSQGFS 1674

Query: 1179 SKPEKLADGRRV----RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
            S+  +L+D        + +V  +G            +AK  A+  AL  LK  K A +K
Sbjct: 1675 SEKLELSDESNADGFHKASVVFYGTVLATSQATTLKLAKQHASIKALNVLKHTKKATLK 1733



 Score = 41.2 bits (95), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 31/116 (26%), Positives = 55/116 (47%), Gaps = 9/116 (7%)

Query: 37  SIMFTCSIRLPINSPLK-RSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMP---- 91
           +I + C +++P    LK  ++ G    T+ LA   +A+EACRVLY + ELD  L P    
Sbjct: 769 NIGYICVVKIPQWLTLKIDTIIGMWQLTEKLACEDSALEACRVLYNMGELDERLQPRTPV 828

Query: 92  --VTKEFINLYENTEP--VVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNT 143
             ++K  I+  +      V+P +   +   + T     +H+ +   F+N    + T
Sbjct: 829 KSLSKSTIDATKTVHSNIVLPDSHSNQLPQNHTNHETGHHRSIPHSFSNFSSKLGT 884


>gi|449493233|ref|XP_004159229.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
          Length = 275

 Score =  129 bits (325), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 89/255 (34%), Positives = 138/255 (54%), Gaps = 24/255 (9%)

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              D  E  +NY F+DK  L +A T ASY     +  ++RLE++GD++L++LITR  Y   
Sbjct: 33   SLDGIEAILNYEFRDKRLLEEAFTDASYSPENCS-SFERLEYVGDSVLNFLITREQYFSN 91

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
               SPG+LT LR+A V+    A +A+  GFH + +H    LH+ I+ F +          
Sbjct: 92   PNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSI-------- 143

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
            +EY L          I+ PK L D+ ES  GA++ DS  S+DTVWK++ E+M+  I    
Sbjct: 144  EEYPLHSNGM-----IKAPKVLADIVESTIGAVFADSN-SIDTVWKIFKELMEPLI--TL 195

Query: 1158 VSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVE--VFGKGSYKGIGRNYCIAKC 1214
             ++ K P+ EL E+ +  + +    ++  + + + V +E  V GKGSY    R   IA+ 
Sbjct: 196  KTMKKHPMTELTEMCQKRSLKLEFRDRWEETKEIEVLIEKQVVGKGSY----RKKLIAQN 251

Query: 1215 TAAKCALKHLKSAKP 1229
             AAK AL++L +  P
Sbjct: 252  RAAKNALENLDTFFP 266


>gi|389749088|gb|EIM90265.1| hypothetical protein STEHIDRAFT_93138 [Stereum hirsutum FP-91666 SS1]
          Length = 1500

 Score =  129 bits (325), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 119/406 (29%), Positives = 183/406 (45%), Gaps = 65/406 (16%)

Query: 777  TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG- 835
            TG + +R ET+GDS LK   ++ ++  YP  HEG+LS LR  QV+  N+  L K K    
Sbjct: 990  TGWNNQRFETLGDSVLKLCTSVHVFNKYPWRHEGQLSVLR--QVAISNMTLLRKAKAVSL 1047

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
            ES + T  E   N     Y +P            PA    C  + +   +         +
Sbjct: 1048 ESFLNT--ESTSNETTWRYCLPS----------GPAPHHPCHPVKDTDRVPLPPPSSRPR 1095

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
            +                           P +S+ DC+EA +GA     G   AL   + L
Sbjct: 1096 RL---------------------VHRRFPRRSLQDCMEATLGAAYATGGIPMALQAGTAL 1134

Query: 956  GLKV---IPPVTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            GL     IP +T    +  S     G  F+  +E + Y F++   L++AMTH S+   T 
Sbjct: 1135 GLNFGGSIPWLTRFGKQCESSAERPGVLFNVLQERLGYTFRNPELLVEAMTHPSF--ATG 1192

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
               YQRLEFLGDA++D  +  +LY    + + G L+  R+  V+  + +S+AV       
Sbjct: 1193 GQSYQRLEFLGDAVIDLTVMSYLYNKFPSATSGKLSTARARAVSAPVLSSIAV------- 1245

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-------EVPKALGDLF 1123
             KHL  GLH+++     +  E + ++    YL   E    ED+       + PKA+ D+ 
Sbjct: 1246 -KHL--GLHKLM-----LVNETNLSIAMGKYLPTLEETSYEDMVLNAWAHDPPKAISDVL 1297

Query: 1124 ESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            ES+ GA+++DSG + D    V   +M   +E LS   PK P+ EL+
Sbjct: 1298 ESLLGAVFVDSGWNWDLAQAVTEGVMNDVLELLSPDTPKDPVSELM 1343



 Score = 45.8 bits (107), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 32/94 (34%), Positives = 45/94 (47%), Gaps = 5/94 (5%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRS---VTG 58
           +NAI +++R CA +P+D FTR      I+ I +     + CS+ LP   PL       TG
Sbjct: 573 NNAIDLLSRLCALIPTDNFTRTYKPTYITNIAQTG--YYVCSLTLPSALPLPHGHLKYTG 630

Query: 59  HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPV 92
               +K  A R  A  A + LY L   D  L+P 
Sbjct: 631 PGKCSKREAKRAVAFLAVKALYGLNVFDEYLLPA 664


>gi|409082707|gb|EKM83065.1| hypothetical protein AGABI1DRAFT_125544 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1430

 Score =  129 bits (325), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 133/499 (26%), Positives = 217/499 (43%), Gaps = 95/499 (19%)

Query: 757  RNTSTPSDFSFDFQPD---LENHTGP------SPKRLETIGDSFLKYAITIFLYCTYPNV 807
            R  ST  +    F PD   +E  T P      S +RLET+GD+ L    T+ L   YP  
Sbjct: 949  RAQSTRLNIGLPFIPDDLLMEALTLPNVDADFSNQRLETLGDAVLDICTTVHLMFKYPRR 1008

Query: 808  HEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
            HEG+LS LR+ +VSN  L    +  V  E  I+++    + W         ++E    + 
Sbjct: 1009 HEGQLSTLRAGRVSNKFLVSCAR-TVELERFISSEKMGVEKW--------PFVE----QK 1055

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
            G+ A                    EI  +K V                    +  IP + 
Sbjct: 1056 GYEAK-------------------EIRDRKSV--------------------KRQIPRRG 1076

Query: 928  IADCVEALIGAYLIECGPRGALLFMSWLGLKV--IPP----VTNPESKHLS-DVLLDGFD 980
            + DCVEAL+GA  +  G   AL      GL    I P        E++ +    L+ G +
Sbjct: 1077 LQDCVEALLGASFLAGGIPMALRTGVCFGLSFGGIQPWGERCRRAEAREIGVPALVAGLE 1136

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            K    I Y F++   L++A+TH S   ++ T  YQRLEFLGD+++  L+T +L+      
Sbjct: 1137 K---EIGYVFENPELLVEAVTHPSLEFSS-TPSYQRLEFLGDSVIKMLVTEYLFHKFPKA 1192

Query: 1041 SPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKM--QAENDFTLN 1097
            +   L   R+  + +   A +A+R +  H +    S  L+  I  +V +   A  D  + 
Sbjct: 1193 TSHQLALPRTKAICSPALAHIAIRKIHIHKYLLQNSIDLNNAINLYVPVLESATADEIVR 1252

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
            + +             + PKA+ D FESV GA+++D G  LD    +   +M+  +E L+
Sbjct: 1253 RGWRY-----------DPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILEVLN 1301

Query: 1158 VSVPKSPIRELLEL-------EPENARFSKPEKLADGRRVRVTVEVFGKGSYKG--IGRN 1208
             S+PK P+ E+LE        +  N +F +  +  +G+ V     VF      G  +  +
Sbjct: 1302 PSIPKDPVSEVLEWLASVGCSKGHNLKFKRSTEERNGQAVESVSAVFHGQIVAGPIVSNS 1361

Query: 1209 YCIAKCTAAKCALKHLKSA 1227
              +++ TAA+ A   L+++
Sbjct: 1362 KAVSRFTAAERAFMALRAS 1380


>gi|403417815|emb|CCM04515.1| predicted protein [Fibroporia radiculosa]
          Length = 1463

 Score =  129 bits (324), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 109/400 (27%), Positives = 176/400 (44%), Gaps = 72/400 (18%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            + G + +RLET+GDS LK A  ++L+  YP+ HEG+L  LR   VSN  L  L + K  G
Sbjct: 962  NAGFNNQRLETLGDSVLKLATVVYLFNKYPHRHEGQLDVLRRNSVSNRTL--LARAKEVG 1019

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
                                    LE  L        LW   +LP+     P + +  + 
Sbjct: 1020 ------------------------LEQYLSSEPQSVRLWRYTALPDRDLFEPYRYVPRV- 1054

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                                        P +S+ DC+EAL+GA  +  G   AL   + L
Sbjct: 1055 ---------------------------FPRRSLQDCMEALLGAAFVAGGIPMALRAGTAL 1087

Query: 956  GLKVIPPVTNPESKHLSDVLLDG-----FDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            GL    P+  P +      + +      F   ++++ YRF+    LL+A+TH S F    
Sbjct: 1088 GLSFGGPL--PWNARYGGQIAESPVTVLFTDLQDTLGYRFRCGKLLLEAVTHPS-FGAAE 1144

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHH 1069
            T  YQRLEFLGDA++D  + R+LY      + G L+  RS  V     AS+AV RLG   
Sbjct: 1145 TSSYQRLEFLGDALIDLTVMRYLYNKFPEATSGQLSWARSRAVCAPALASVAVKRLGLQK 1204

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
                 +  L   + + + +      +L++E  ++ G   +      PKA+ D+ ESV GA
Sbjct: 1205 LLLVNNVELSIAMGKCIPILE----SLSEEEIILSGWKQDP-----PKAMSDVLESVLGA 1255

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            +++D   + +    +  +++   +E L+  +P+ P+  L+
Sbjct: 1256 VFVDLDFNFEKASSIAEQVLNDLLEVLTPELPRDPVSNLM 1295


>gi|336380656|gb|EGO21809.1| hypothetical protein SERLADRAFT_441040 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1460

 Score =  129 bits (323), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 179/420 (42%), Gaps = 78/420 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS LK   T+ +   YP+ HEG+LSHLR   VSN  L    K+ +  E  + +
Sbjct: 988  QRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSHLRQNSVSNRTLLSRAKE-IELERFLNS 1046

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +      W    Y VP+  ++ L           C    + +   P + L+         
Sbjct: 1047 ESHNLHFW---RYTVPEDTDSTL-----------CRIRRSTRREFPRRSLQ--------- 1083

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            DC                            +EA +GA  +  G   AL   + LGL    
Sbjct: 1084 DC----------------------------MEATLGAAFVTGGIDMALQAGTALGLSFGG 1115

Query: 962  PV-------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            P+         PES     +  D     +ES+ Y F     L++A TH S F  + +  Y
Sbjct: 1116 PIPWSLKYSRRPESSPAPHLFAD----LQESLCYEFHRGDLLVEAATHPS-FATSASSSY 1170

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKH 1073
            QRLEFLGDA++D ++  +LY      + G L+  RS  V     AS++V RL  H     
Sbjct: 1171 QRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAARSRAVCGPTLASISVRRLCLHKILLV 1230

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             +  L   I R V +          E   +E   ++    + PKAL D+ ESV GAI++D
Sbjct: 1231 NNVELSSAINRHVPI---------LESTSVEDIINKGWKYDPPKALSDVLESVVGAIFVD 1281

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA----RFSKPEKLADGRR 1189
            S  + + V  V   IM   +E LS ++PK P+ EL+     +      F K +  A+ RR
Sbjct: 1282 SAYNFEKVASVVELIMSDVLELLSPNLPKDPVSELMVWAASSGCRRISFRKTQSHAELRR 1341


>gi|403418950|emb|CCM05650.1| predicted protein [Fibroporia radiculosa]
          Length = 1373

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 126/449 (28%), Positives = 193/449 (42%), Gaps = 81/449 (18%)

Query: 752  EHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGK 811
            EH I   T   +  +FD++            RLE  GD+FLKY  +I+ + T P+V EG 
Sbjct: 872  EHLIAALTPPSASVAFDYE------------RLELFGDAFLKYVASIYCFVTTPHVREGA 919

Query: 812  LSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPA 871
            L   R K +SN  L         G + I          LPP      Y+++      F A
Sbjct: 920  LHMARQKIISNKALLT-------GANRIG---------LPP------YIQSK----PFVA 953

Query: 872  SLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHS--------- 922
              W  ++ P+     P     I  QK V  +  V  +  ++   +  ++           
Sbjct: 954  KTWTPITSPH-SSRDP-----INDQKAVHYNDAVAGDTSAIQTTSKRSKKQKQQDEQNIQ 1007

Query: 923  -IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV-------------TNPES 968
             + DK++AD VEA+IGA  +  G R AL  M  L +  IP V             T+P +
Sbjct: 1008 WLGDKTVADVVEAIIGAAYLSGGQRIALQTMKVLSVN-IPGVEQWSDFSRLFTSQTSPST 1066

Query: 969  KHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYL 1028
              L    +   +    ++   F     L QA+TH S   +     Y RLEF+GDA+LD+L
Sbjct: 1067 VPLPTATVRAVETIVGNV---FARPQLLAQALTHTSIGAHD-DRTYDRLEFVGDAVLDFL 1122

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
            + + +Y+     SP  LT L+SA+V+N   A+  V  G H   +H +P +   +Q +V+ 
Sbjct: 1123 VVQFIYDRNPGLSPNGLTLLKSAMVSNHALAAFCVHSGLHIHLRHAAPEVGTAVQVYVRK 1182

Query: 1089 QA---ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                 E ++ L Q    + G+   A  ++ PK L D+ ESV GA+Y+       +V   +
Sbjct: 1183 LGEVREKEYRLAQSERRLPGQYWLA--LDPPKTLSDVVESVIGALYISDDFQETSVRAFF 1240

Query: 1146 YEIMKSEIE---RLSVSVPKSPIRELLEL 1171
               +K   E   RL    P  P   L EL
Sbjct: 1241 DGTIKPFYEYHIRLQSLCPH-PTTTLFEL 1268



 Score = 46.6 bits (109), Expect = 0.083,   Method: Compositional matrix adjust.
 Identities = 37/132 (28%), Positives = 62/132 (46%), Gaps = 19/132 (14%)

Query: 319 FYVAEIMTNVHP--RSMFPSRTNTYQTFEEY--YSLKYGLQIQNLEQPLLDVDHTSCRLN 374
           FYV  +  ++ P  +++   R   Y +  EY    +K    ++N +QPLL+V      +N
Sbjct: 744 FYVVRVRRDMTPLSKAIDSPREAEYPSLLEYCKTRIKDFQGLKNEKQPLLEVAVAPPAIN 803

Query: 375 FLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSIL 434
           +L P                 R  ++ S    + L+PELC     PAS +R  + +PSIL
Sbjct: 804 YLNPVL---------------RPLLQSSKAPPKYLIPELCAKFTIPASTFRTMLLVPSIL 848

Query: 435 YRLNALLLADEI 446
           +R++  LL  E+
Sbjct: 849 HRIDHQLLVKEL 860


>gi|336367926|gb|EGN96270.1| hypothetical protein SERLA73DRAFT_112480 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1460

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 121/420 (28%), Positives = 179/420 (42%), Gaps = 78/420 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS LK   T+ +   YP+ HEG+LSHLR   VSN  L    K+ +  E  + +
Sbjct: 988  QRLETLGDSVLKLGSTVHIMNKYPHRHEGQLSHLRQNSVSNRTLLSRAKE-IELERFLNS 1046

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +      W    Y VP+  ++ L           C    + +   P + L+         
Sbjct: 1047 ESHNLHFW---RYTVPEDTDSTL-----------CRIRRSTRREFPRRSLQ--------- 1083

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            DC                            +EA +GA  +  G   AL   + LGL    
Sbjct: 1084 DC----------------------------MEATLGAAFVTGGIDMALQAGTALGLSFGG 1115

Query: 962  PV-------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
            P+         PES     +  D     +ES+ Y F     L++A TH S F  + +  Y
Sbjct: 1116 PIPWSLKYSRRPESSPAPHLFAD----LQESLCYEFHRGDLLVEAATHPS-FATSASSSY 1170

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKH 1073
            QRLEFLGDA++D ++  +LY      + G L+  RS  V     AS++V RL  H     
Sbjct: 1171 QRLEFLGDAVIDLVVLNYLYRRFPQANSGQLSAARSRAVCGPTLASISVRRLCLHKILLV 1230

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             +  L   I R V +          E   +E   ++    + PKAL D+ ESV GAI++D
Sbjct: 1231 NNVELSSAINRHVPI---------LESTSVEDIINKGWKYDPPKALSDVLESVVGAIFVD 1281

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA----RFSKPEKLADGRR 1189
            S  + + V  V   IM   +E LS ++PK P+ EL+     +      F K +  A+ RR
Sbjct: 1282 SAYNFEKVASVVELIMSDVLELLSPNLPKDPVSELMVWAASSGCRRISFRKTQSHAELRR 1341


>gi|336386278|gb|EGO27424.1| hypothetical protein SERLADRAFT_446652 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1267

 Score =  128 bits (322), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 127/428 (29%), Positives = 190/428 (44%), Gaps = 53/428 (12%)

Query: 752  EHGIIRNTSTPS-DFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEG 810
            E  ++   STPS  F +D++            RLE +GD+FLKY  +I+++ T P  +EG
Sbjct: 721  EELLLAAISTPSAGFDYDYE------------RLEVLGDAFLKYLSSIYVFVTNPAKNEG 768

Query: 811  KLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY--------FVPKYLET 862
             L   R + +SN  L K     V     I ++      W PP +        F P   +T
Sbjct: 769  ALHVSRQQIISNKALLKTA-CTVGLPPFIQSRPFSYKVWQPPNFSLVSIREDFTPND-DT 826

Query: 863  ALIEAGFPASLWNCLSLPNLKELSPEKVL--EIIKQKCVDLDCTVDMNVQSVVPYNLVTQ 920
              I      S         + E  P+K+   + +K K +                   TQ
Sbjct: 827  KKISKAPSQSPLARKETEAIMEAPPKKIESEDSVKGKALPGSHASSKKENRGQQDTQYTQ 886

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDV------ 974
              + DK+IAD VEA+IGA  I  G   AL     L +    P+ N E  H +D       
Sbjct: 887  W-LGDKAIADVVEAIIGAAYISGGRDLALTTAKTLDI----PIRNIE--HWADFGRKALT 939

Query: 975  --------LLDG-FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
                    L DG  +  E  I ++F     L QA+THAS      + CY+RLEF+GDAIL
Sbjct: 940  PPPRVTAKLRDGSIEAVETIIGHKFAYPHLLAQALTHAS-VQGYQSTCYERLEFIGDAIL 998

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            ++++ RH++  +   SPG LT ++ A+V+N   A++ V  G H    + S  L   IQ +
Sbjct: 999  EFMVIRHIFNRDDKMSPGVLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQGY 1058

Query: 1086 V---KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
            +   K +   ++ L        G+     D+E PKAL D+ ES+ GAIY+  G       
Sbjct: 1059 IDELKKKQTEEYELAAREQRTPGQF--WLDVEPPKALSDVVESIIGAIYISDGFQPIGSE 1116

Query: 1143 KVYYEIMK 1150
             V+  I+K
Sbjct: 1117 LVFNNILK 1124



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 110/468 (23%), Positives = 178/468 (38%), Gaps = 74/468 (15%)

Query: 9   NRYCARLPSDIFTRLAPIITISE-------------IKEDDSIMFTCSIRLPINSPLKRS 55
           NR C R  +    RLA  +   E             + E  S  ++C++ LP + P  R 
Sbjct: 287 NRICLRDATSTVYRLAAAMYDVEKPFDVELFRINKHLDEQGSWTYSCNVMLPAH-PTLRV 345

Query: 56  VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIET 115
            TG   PT   A R A    C  L+    LD  L P  +     +   +   PK   +  
Sbjct: 346 FTGSSCPTPADARRSACYYTCTELFNAGVLDYRLFPQQRLKPARFLEDDFEEPKK-NMSN 404

Query: 116 YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
                     Y +R  + ++N   +V     LY V + L+   PD+        + P   
Sbjct: 405 KNGQATPNHLYPRRKPAFWSNSLTAVFNDT-LYPVMVALSGFSPDQ--------YAP--- 452

Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              + +LT   +P++  F +F     +   + L     +  ++N    L        +++
Sbjct: 453 ---VLLLTRHPLPRMHDFKLF--FSGISAPLHLAWGGPLEVDQNQLALLHQYTLRICRIV 507

Query: 236 KLKKYLMLFDPNCSENSYFIVPTVSD----SEQIVIDW------KFMTLISEHHNDVIQD 285
             K +    +    E +YF  P  SD    S Q+   W      +F+   S         
Sbjct: 508 ANKPFACPLN----EMAYFYAPLKSDCTRTSSQVQSKWNIPDFSEFICWESVRIASRQWA 563

Query: 286 IPEKER--ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS---RTNT 340
            P   R  E+   D +   DAV+   +  +F   Y YV +   ++ P S  P+   R   
Sbjct: 564 TPLNWRNVEDLANDTA---DAVIQDRWV-EFTRRY-YVVKTRPDLSPMSK-PADSPREAA 617

Query: 341 YQTFEEY-YSLKYGLQ-IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
           Y    EY  S + GL  + + EQPL++V  T    N L+P +         TTS +    
Sbjct: 618 YPNLLEYCKSRRKGLDCLVDQEQPLIEVSKTPGLSNHLSPTF------RPLTTSAK---- 667

Query: 399 IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEI 446
                   + L+PELC     PAS  R ++ LPSI  R++ +L+  E+
Sbjct: 668 -----ASAKYLIPELCAKLTIPASTLRTALLLPSISRRIDDILIVKEL 710


>gi|449453708|ref|XP_004144598.1| PREDICTED: ribonuclease 3-like protein 3-like [Cucumis sativus]
          Length = 275

 Score =  128 bits (321), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/257 (34%), Positives = 139/257 (54%), Gaps = 28/257 (10%)

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC--YQRLEFLGDAILDYLITRHLYE 1035
              D  E  +NY F+DK  L +A T ASY   +  +C  ++RLE++GD++L++LITR  Y 
Sbjct: 33   SLDGIEAILNYEFRDKRLLEEAFTDASY---SPENCSSFERLEYVGDSVLNFLITREQYF 89

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 SPG+LT LR+A V+    A +A+  GFH + +H    LH+ I+ F +        
Sbjct: 90   SNPNLSPGSLTRLRAANVDTEKLARVAITHGFHRYLRHNKADLHQKIEEFGRSI------ 143

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
              +EY L          I+ PK L D+ ES  GA++ DS   +DTVWK++ E+M+  I  
Sbjct: 144  --EEYPLHSNGM-----IKAPKVLADIVESTIGAVFADSNF-IDTVWKIFKELMEPLI-- 193

Query: 1156 LSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVE--VFGKGSYKGIGRNYCIA 1212
               ++ K P+ EL E+ +  + +    ++  + + + V +E  V GKGSY    R   IA
Sbjct: 194  TLKTMKKHPMTELTEMCQKRSLKLEFRDRWEETKEIEVLIEKQVVGKGSY----RKKLIA 249

Query: 1213 KCTAAKCALKHLKSAKP 1229
            +  AAK AL++L +  P
Sbjct: 250  QNRAAKNALENLDTFFP 266


>gi|145666650|gb|ABP88781.1| Dicer1 [Ctenopharyngodon idella]
          Length = 183

 Score =  127 bits (319), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 71/179 (39%), Positives = 105/179 (58%), Gaps = 1/179 (0%)

Query: 79  LYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCR 138
           L+++ ELD+ LMPV KE +   E  +    +   +   P STKRRQ Y K ++     C 
Sbjct: 1   LHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGSTKRRQCYPKAVSVVNPKCL 60

Query: 139 PSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTR 198
            S   PCYLY + M LT P+PDE N R RK++PPE++ +   ILT K IP++  FP++TR
Sbjct: 61  FS-EQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFGILTAKPIPRIPHFPVYTR 119

Query: 199 CGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP 257
            GEV +SIEL      LS E L        Y+F+ +L+L+K  + F P  ++++Y ++P
Sbjct: 120 SGEVTISIELQKSGFTLSAEQLELITRLHQYIFSHILRLEKPALEFKPVEADSAYCVLP 178


>gi|392568586|gb|EIW61760.1| ribonuclease III [Trametes versicolor FP-101664 SS1]
          Length = 1232

 Score =  127 bits (318), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 116/417 (27%), Positives = 172/417 (41%), Gaps = 52/417 (12%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD+FLK   + FLY T P   EG L ++R   + N         KV  E  +  
Sbjct: 735  ERLEFLGDAFLKVIASNFLYVTMPTAGEGTLHNVRQSIIGN---------KVLHECAMRV 785

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
               P         FV            F A LW    +P      P + +E+   +    
Sbjct: 786  GICP---------FVQ--------HKRFVAKLWQPPHIPAPTATEPNEDVEMADGEGTGD 828

Query: 902  DCTVDMNVQ-SVVPYNLVTQHSI--PDKSIADCVEALIGAYLIECGPRGALL-------- 950
                  N + S     L  Q+ +   DK +AD VEA++ A  +  G  GAL         
Sbjct: 829  GGEGKGNRKKSKKERQLSAQNRLWMGDKVVADVVEAILAAAFLSGGHEGALQAARRLQIP 888

Query: 951  ---FMSWLGLKVIPPVTNPESKHLSD----VLLDGFDKFEESINYRFKDKSYLLQAMTHA 1003
                  W     I      +          VL D  +  +  +   F     L QA+TH 
Sbjct: 889  LPNIAQWTDFTRIGAQQGEQDAGAGAAGAFVLDDTVEAVQAIVGSVFSKPELLAQALTHG 948

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            S F ++    Y+RLEF+GDAILD+L+ RH+++     SPG LT L+  +V+N   A+  V
Sbjct: 949  SAFGSSEGASYERLEFIGDAILDFLVARHIFQRHPHLSPGGLTLLKGGMVSNRALAAFCV 1008

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQA---ENDFTLNQEYYLMEGECDEAEDIEVPKALG 1120
              G H      S  L + IQR+V       E ++        + G+      +E PK L 
Sbjct: 1009 TTGLHRHLHFASDQLADSIQRYVTSLTELREKEYEAVAREQRLPGQYWLDLPLEPPKCLS 1068

Query: 1121 DLFESVAGAIYLDSGMSLDTVWK----VYYEIMKSEIERLSVSV-PKSPIRELLELE 1172
            DL ES+ GA+Y+  G     V +    V+   M + +   ++S  PK  + ELL+ E
Sbjct: 1069 DLVESILGALYVCDGFFEVGVGRFFDAVFKPFMDAHVRLQTLSTNPKVTLLELLQAE 1125



 Score = 47.4 bits (111), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 22/60 (36%), Positives = 34/60 (56%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+RLEFLGDA L  + +  LY        GTL ++R +++ N +    A+R+G   F +H
Sbjct: 734  YERLEFLGDAFLKVIASNFLYVTMPTAGEGTLHNVRQSIIGNKVLHECAMRVGICPFVQH 793


>gi|426200573|gb|EKV50497.1| hypothetical protein AGABI2DRAFT_64825 [Agaricus bisporus var.
            bisporus H97]
          Length = 1717

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 123/433 (28%), Positives = 191/433 (44%), Gaps = 86/433 (19%)

Query: 757  RNTSTPSDFSFDFQPD---LENHTGP------SPKRLETIGDSFLKYAITIFLYCTYPNV 807
            R  ST  +    F PD   +E  T P      S +RLET+GD+ L    T+ L   YP  
Sbjct: 949  RAQSTRLNIGLPFIPDDLLMEALTLPNVDADFSNQRLETLGDAVLDICTTVHLMFKYPRR 1008

Query: 808  HEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
            HEG+LS LR+ +VSN  L    +  V  E  I+++    + W         ++E    + 
Sbjct: 1009 HEGQLSTLRAGRVSNKFLVSCAR-TVELERFISSEKMGVEKW--------PFVE----QK 1055

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
            G+                   +V EI  +K V                    +  IP + 
Sbjct: 1056 GY-------------------EVKEIRNRKSV--------------------KRQIPRRG 1076

Query: 928  IADCVEALIGAYLIECGPRGALLFMSWLGLKV--IPP----VTNPESKHLS-DVLLDGFD 980
            + DCVEAL+GA  +  G   AL      GL    I P        E++ +    L+ G +
Sbjct: 1077 LQDCVEALLGASFLAGGIPMALRTGVCFGLSFGGIQPWGERCRRAEAREIGVPALVAGLE 1136

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            K    I Y F++   L++A+TH S   ++ T  YQRLEFLGD+++  L+T +LY      
Sbjct: 1137 K---EIGYVFENPELLVEAVTHPSLEFSS-TPSYQRLEFLGDSVIKMLVTEYLYHKFPKA 1192

Query: 1041 SPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKM--QAENDFTLN 1097
            +   L   R+  + +   A +A+R L  H +    S  L+  I  +V +   A  D  + 
Sbjct: 1193 TSHQLALPRTKAICSPALAHIAIRKLHIHKYLLQNSIDLNNAINLYVPVLESATADEIVR 1252

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
            + +             + PKA+ D FESV GA+++D G  LD    +   +M+  +E L+
Sbjct: 1253 RGW-----------RYDPPKAISDAFESVVGAVFVDVGYDLDRTGGIVCRLMEDILEVLN 1301

Query: 1158 VSVPKSPIRELLE 1170
             S+PK P+ E+LE
Sbjct: 1302 PSIPKDPVSEVLE 1314


>gi|299747526|ref|XP_001837094.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
 gi|298407559|gb|EAU84711.2| hypothetical protein CC1G_00230 [Coprinopsis cinerea okayama7#130]
          Length = 1499

 Score =  125 bits (314), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 171/385 (44%), Gaps = 45/385 (11%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD+FLKY  ++ ++   P  +EG L   R + +SN  L     Q      + + 
Sbjct: 990  ERLELLGDAFLKYLASVVVFVMNPTQNEGSLHVARQRLISNKALLACATQVGLPAYICSK 1049

Query: 842  KFEPRDNWLP---------------PGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS 886
             F  R  W P               PG  V +             S     + P+     
Sbjct: 1050 PFLLR-GWRPWPSASFTEISKAPDKPGTGVAEQEVDTCKARAQNESAGESQTPPSADHDK 1108

Query: 887  PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR 946
             +   E+ +    +         +   P N   Q+    K+IAD  EA+IGA  +  G  
Sbjct: 1109 QDSDQEVEEGAKTESSQKKRKRKKWKDPMNQNLQNLGDKKAIADVTEAIIGAAYVSGGRE 1168

Query: 947  GALLFM-----------SW--LGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
             AL              +W  LG++V+ P T        ++     +  E  I +RF+  
Sbjct: 1169 TALDVAKALSIPIPGINTWSDLGMQVVIPFTT----DAIELRPGSIEAVEGIIGHRFQQP 1224

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
              L Q +TH S   + +   Y+RLEF+GDAILD+++ RH+++ ER  SPG LT L+ A+V
Sbjct: 1225 HLLAQILTHTSVHGSKVL-TYERLEFIGDAILDFMVIRHIFDRERTLSPGGLTMLKGAMV 1283

Query: 1054 NNIIFASLAVRLGFHHFFKHLSPG---LHEVIQRFVKM---QAENDFTLNQEYYLMEGEC 1107
             N   A++ +  G    +KHL  G   L   I+ + +    +A+ ++ L ++   M G+ 
Sbjct: 1284 ANSTLATVCILSG---IYKHLVFGSYQLSSAIEDYAEAINERADKEYALAEQENRMPGQF 1340

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYL 1132
                DIE PKAL D+ ES+ GA+Y+
Sbjct: 1341 --WPDIEPPKALSDVIESIIGALYI 1363


>gi|336373452|gb|EGO01790.1| hypothetical protein SERLA73DRAFT_85682 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1354

 Score =  124 bits (312), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 127/429 (29%), Positives = 190/429 (44%), Gaps = 54/429 (12%)

Query: 752  EHGIIRNTSTPS-DFSFDFQPDLENHTGPSPKRLETI-GDSFLKYAITIFLYCTYPNVHE 809
            E  ++   STPS  F +D++            RLE + GD+FLKY  +I+++ T P  +E
Sbjct: 815  EELLLAAISTPSAGFDYDYE------------RLEVLAGDAFLKYLSSIYVFVTNPAKNE 862

Query: 810  GKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGY--------FVPKYLE 861
            G L   R + +SN  L K     V     I ++      W PP +        F P   +
Sbjct: 863  GALHVSRQQIISNKALLKTA-CTVGLPPFIQSRPFSYKVWQPPNFSLVSIREDFTPND-D 920

Query: 862  TALIEAGFPASLWNCLSLPNLKELSPEKVL--EIIKQKCVDLDCTVDMNVQSVVPYNLVT 919
            T  I      S         + E  P+K+   + +K K +                   T
Sbjct: 921  TKKISKAPSQSPLARKETEAIMEAPPKKIESEDSVKGKALPGSHASSKKENRGQQDTQYT 980

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDV----- 974
            Q  + DK+IAD VEA+IGA  I  G   AL     L +    P+ N E  H +D      
Sbjct: 981  QW-LGDKAIADVVEAIIGAAYISGGRDLALTTAKTLDI----PIRNIE--HWADFGRKAL 1033

Query: 975  ---------LLDG-FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAI 1024
                     L DG  +  E  I ++F     L QA+THAS      + CY+RLEF+GDAI
Sbjct: 1034 TPPPRVTAKLRDGSIEAVETIIGHKFAYPHLLAQALTHAS-VQGYQSTCYERLEFIGDAI 1092

Query: 1025 LDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR 1084
            L++++ RH++  +   SPG LT ++ A+V+N   A++ V  G H    + S  L   IQ 
Sbjct: 1093 LEFMVIRHIFNRDDKMSPGVLTLMKGAMVSNSALAAVCVWSGLHEHILYESFPLAGNIQG 1152

Query: 1085 FV---KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            ++   K +   ++ L        G+     D+E PKAL D+ ES+ GAIY+  G      
Sbjct: 1153 YIDELKKKQTEEYELAAREQRTPGQF--WLDVEPPKALSDVVESIIGAIYISDGFQPIGS 1210

Query: 1142 WKVYYEIMK 1150
              V+  I+K
Sbjct: 1211 ELVFNNILK 1219



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 112/469 (23%), Positives = 179/469 (38%), Gaps = 76/469 (16%)

Query: 9   NRYCARLPSDIFTRLAPIITISE-------------IKEDDSIMFTCSIRLPINSPLKRS 55
           NR C R  +    RLA  +   E             + E  S  ++C++ LP + P  R 
Sbjct: 381 NRICLRDATSTVYRLAAAMYDVEKPFDVELFRINKHLDEQGSWTYSCNVMLPAH-PTLRV 439

Query: 56  VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIET 115
            TG   PT   A R A    C  L+    LD  L P  +     +   +   PK      
Sbjct: 440 FTGSSCPTPADARRSACYYTCTELFNAGVLDYRLFPQQRLKPARFLEDDFEEPKKNMSNK 499

Query: 116 YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
              +T     Y +R  + ++N   +V     LY V + L+   PD+        + P   
Sbjct: 500 NGQATPN-HLYPRRKPAFWSNSLTAVFNDT-LYPVMVALSGFSPDQ--------YAP--- 546

Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVL 235
              + +LT   +P++  F +F     +   + L     +  ++N    L        +++
Sbjct: 547 ---VLLLTRHPLPRMHDFKLF--FSGISAPLHLAWGGPLEVDQNQLALLHQYTLRICRIV 601

Query: 236 KLKKYLMLFDPNCSENSYFIVPTVSD----SEQIVIDW------KFMTLISEHHNDVIQD 285
             K +    +    E +YF  P  SD    S Q+   W      +F+   S         
Sbjct: 602 ANKPFACPLN----EMAYFYAPLKSDCTRTSSQVQSKWNIPDFSEFICWESVRIASRQWA 657

Query: 286 IPEKER--ENFVFDESKFRDAVVMP-WYRNQFEPTYFYVAEIMTNVHPRSMFPS---RTN 339
            P   R  E+   D +   DAV+   W   +F   Y YV +   ++ P S  P+   R  
Sbjct: 658 TPLNWRNVEDLANDTA---DAVIQDRWV--EFTRRY-YVVKTRPDLSPMSK-PADSPREA 710

Query: 340 TYQTFEEY-YSLKYGLQ-IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRR 397
            Y    EY  S + GL  + + EQPL++V  T    N L+P +         TTS +   
Sbjct: 711 AYPNLLEYCKSRRKGLDCLVDQEQPLIEVSKTPGLSNHLSPTF------RPLTTSAK--- 761

Query: 398 EIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEI 446
                    + L+PELC     PAS  R ++ LPSI  R++ +L+  E+
Sbjct: 762 ------ASAKYLIPELCAKLTIPASTLRTALLLPSISRRIDDILIVKEL 804


>gi|115478498|ref|NP_001062844.1| Os09g0315100 [Oryza sativa Japonica Group]
 gi|113631077|dbj|BAF24758.1| Os09g0315100, partial [Oryza sativa Japonica Group]
          Length = 245

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/259 (33%), Positives = 117/259 (45%), Gaps = 50/259 (19%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S + LET+GDSFLKY  T  L+  Y   HEG L+ ++   +SN  L +L         + 
Sbjct: 32   SQESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLACSSNLVGYIH 91

Query: 840  ATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCV 899
            A +F PRD W+ P                                             C+
Sbjct: 92   AEEFNPRD-WIIP---------------------------------------------CL 105

Query: 900  DLDCTVDMNVQSVVPYNLVTQH--SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
            D D   +  +  + P  + +Q   SI  K IAD VEALIGAYL   G + A L M  LG+
Sbjct: 106  DYDERGNKKISFLAPNGMYSQRKMSIKSKRIADSVEALIGAYLSTAGEKAAFLLMKSLGM 165

Query: 958  KVIPPVTNPESKHLSDVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             +      P  + +S    +  D    E  + Y+F D   LL+A+TH SY  +  T CYQ
Sbjct: 166  NIEFHTEIPVERKISMKAEEFIDVRSLEGMLGYKFNDSLLLLEALTHGSYQTSGPTSCYQ 225

Query: 1016 RLEFLGDAILDYLITRHLY 1034
            RLEFLGDAILD+L T + Y
Sbjct: 226  RLEFLGDAILDHLFTEYYY 244



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 19/48 (39%), Positives = 28/48 (58%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
            + LE LGD+ L Y+ TRHL+ + R    G LT ++  L++N     LA
Sbjct: 34   ESLETLGDSFLKYVTTRHLFSEYRLQHEGILTKMKKNLISNAALCQLA 81


>gi|384494893|gb|EIE85384.1| hypothetical protein RO3G_10094 [Rhizopus delemar RA 99-880]
          Length = 407

 Score =  124 bits (310), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 106/420 (25%), Positives = 184/420 (43%), Gaps = 83/420 (19%)

Query: 755  IIRNTSTPSDFSF-DFQPDLENHTGPSP------KRLETIGDSFLKYAITIFLYCTYPNV 807
            +I+   T  +  F D +  LE  T PS       +RLE +GD+ LK+ ++ +LY  YP  
Sbjct: 46   LIQQLKTVHNLQFIDDELMLEAFTSPSANRKQDYERLEFLGDAVLKFIVSSYLYAKYPTY 105

Query: 808  HEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
             E +L+ LR    SN +   + K       +I+     R  W PP +             
Sbjct: 106  SEAELTSLRQVMTSNKSFANIAKDLKLHRYIISQS-TVRRFWRPPHF------------- 151

Query: 868  GFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
                                + VL+  K K                  + +T H + D +
Sbjct: 152  --------------------QNVLDSNKIK------------------HWLTHHLVSDNT 173

Query: 928  IADCVEALIGAYLIECGPRGALLFMSWLGLKV--------IPPVTNPESKHLSDVLLDGF 979
            +AD +E+ +GA  +     GA+   + L L +        +  +  P     +  +    
Sbjct: 174  LADIIESTVGAAFLSQSIDGAIYAATQLKLPLGSIKVWSDLRHIWTPSPASATGQINIDV 233

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
             +  E + Y+FK+   + +A+TH S  +++L  CY+RLEFLGDAILD+ +T+++Y+    
Sbjct: 234  VRVGEMLGYQFKNYLLVQEALTHGS-VMDSLVPCYERLEFLGDAILDFFVTQYIYQKHPT 292

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR----FVKMQAENDFT 1095
             +PG L +LR + VN+ I +++ + +G      H+S  +   I +       MQ++   T
Sbjct: 293  AAPGILHNLRKSSVNHHILSAVCLNMGLDKHIIHVSAEIAASILKAEAIHKDMQSKGKDT 352

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
               EY+L          +  PK L D+ ES+ GAI +DSG  ++ V + +    K  +E+
Sbjct: 353  --DEYWL---------HLNPPKVLSDVIESLMGAILVDSGFDINQVEEFFERWFKPILEK 401



 Score = 57.0 bits (136), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 54/181 (29%), Positives = 89/181 (49%), Gaps = 18/181 (9%)

Query: 968  SKHLSDVLL--DGF---DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
            S+ + D+LL  D F    + +   N +F D   +L+A T  S   N   D Y+RLEFLGD
Sbjct: 31   SQLIPDILLQIDAFLLIQQLKTVHNLQFIDDELMLEAFTSPS--ANRKQD-YERLEFLGD 87

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            A+L ++++ +LY     +S   LT LR  + +N  FA++A  L  H +    S      +
Sbjct: 88   AVLKFIVSSYLYAKYPTYSEAELTSLRQVMTSNKSFANIAKDLKLHRYIISQS-----TV 142

Query: 1083 QRFVK-MQAENDFTLNQ-EYYLMEGECDE---AEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            +RF +    +N    N+ +++L      +   A+ IE       L +S+ GAIY  + + 
Sbjct: 143  RRFWRPPHFQNVLDSNKIKHWLTHHLVSDNTLADIIESTVGAAFLSQSIDGAIYAATQLK 202

Query: 1138 L 1138
            L
Sbjct: 203  L 203


>gi|170091728|ref|XP_001877086.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164648579|gb|EDR12822.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1358

 Score =  122 bits (307), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 113/405 (27%), Positives = 177/405 (43%), Gaps = 45/405 (11%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM-IA 840
            +RLE +GD+FLKY  TI+++   P  +EG L   R K +SN +L  L    + G  + I 
Sbjct: 850  ERLELLGDAFLKYLCTIYVFVAEPTQNEGSLHIARQKLISNKSL--LENSNLIGLPVYIQ 907

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC-- 898
             K  P  +W PP + +       +++     +    +    +     E         C  
Sbjct: 908  AKPFPAKSWQPPNFRLTPRTSKMIVDKSDEEAFTPMILGSEMSSDVVEGAFTRTSTACNP 967

Query: 899  ----VDLDC---TVDMNVQSVVPYNLVTQHS----------IPDKSIADCVEALIGAYLI 941
                VDL     T D+N +    Y    +            + DK++AD VEA+IGA  I
Sbjct: 968  HVSGVDLAVINETSDVNERDPPFYGKKNKKKARQDEQSSQWLGDKAVADVVEAIIGAAYI 1027

Query: 942  ECGPRGALLFMSWLGLKVI---------PPVTNPESKHLSDVLLDGFDKFEESINYRFKD 992
              G   AL     L + +            V+ P     + +  +     E  I + F+ 
Sbjct: 1028 SGGRETALQVTKALAIPISNINRWSDFGRNVSTPPPDASAKLRPESTSAIERIIGHNFQR 1087

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
               L QA+TH+S      +  Y RLEF+GDAILD+++ +H++  ++  SPG LT L+ A+
Sbjct: 1088 PHLLAQALTHSS-MQGHESASYGRLEFIGDAILDFMVIQHIFNRDQTLSPGALTLLKGAM 1146

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA-ENDFTLNQ--EYYLMEGECDE 1109
            V+N   A++ V  G     KHL   L E  Q    ++   N+    Q  EY   E E   
Sbjct: 1147 VSNSALAAVCVSSGLR---KHL---LFESYQLAGSIEVYANELKARQQKEYLAAEREGRS 1200

Query: 1110 AED----IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
                   IE PKAL D+ ES+ GAIY+    +     +++  ++K
Sbjct: 1201 PGQYWLGIEPPKALSDVVESIIGAIYISDDFTPIGAERLFNNVLK 1245


>gi|402217569|gb|EJT97649.1| ribonuclease III [Dacryopinax sp. DJM-731 SS1]
          Length = 1400

 Score =  122 bits (305), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 109/392 (27%), Positives = 171/392 (43%), Gaps = 54/392 (13%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL-FKLGKQKVFGESMIA 840
            +RLE +GDSFLKY  +IFL+ T P   EG L   R + +SN  L F   +     + + +
Sbjct: 875  QRLELLGDSFLKYISSIFLFVTCPQDGEGSLHIHRQRIISNSALQFHSDRVGQLPQYIQS 934

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEA------GFPASLWNCLSLPNLKELSPEK-VLEI 893
             +  PR  W PP + +      + ++       G    +      P      PE  V + 
Sbjct: 935  RQHSPR-QWCPPNFLLYHPCMASALDTSEKFIQGMEERIEASNDGPTAGGSPPESGVTKA 993

Query: 894  IKQKCVDLDCTVDMNV--QSVVPYNLVT-------QHS-IPDKSIADCVEALIGAYLIEC 943
            ++    + + + D +   +S +PY+          QH  + DKS+AD  EA++GA  +  
Sbjct: 994  LESHQANAETSPDNSTVSRSPMPYSARERALMREEQHQELGDKSVADVAEAVLGAAWLTG 1053

Query: 944  GPRGALLFMSWLGLKV----------------------IPPVTNPESKHLSDVLLDGFDK 981
                AL     LGL +                      I P++ P+            + 
Sbjct: 1054 QREMALYVCHILGLPMTRMGSWDFLRDHAHIFFHEELDIGPLSQPK-----------VEA 1102

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E  + ++FK+      A+TH+S   +T   CY+RLEF+GDAILD++  R LY       
Sbjct: 1103 VEAILGHKFKNPFLAATALTHSS-MSSTDFPCYERLEFIGDAILDFVTVRLLYMRWGELH 1161

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G LT L+ A+V+N   A+  V LG HH+  H SP L E +  + K   +          
Sbjct: 1162 EGWLTMLKGAIVSNAALAAFCVDLGLHHYIIHDSPHLVETVSSYAKEITKAKEEDLAAAA 1221

Query: 1102 LMEGECDEA-EDIEVPKALGDLFESVAGAIYL 1132
              +    E    +E PK L D+ E++ GAIY+
Sbjct: 1222 AEDRAPGEYWVTLEPPKVLSDIVEALLGAIYV 1253


>gi|392593064|gb|EIW82390.1| ribonuclease III [Coniophora puteana RWD-64-598 SS2]
          Length = 1217

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 122/415 (29%), Positives = 178/415 (42%), Gaps = 83/415 (20%)

Query: 755  IIRNTSTPSD-FSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLS 813
            ++   S PS  ++FD++            RLE +GD+FLKY  +I+++  YP   EG L 
Sbjct: 723  LLSALSAPSALYAFDYE------------RLELLGDAFLKYITSIYVFVIYPAHAEGSLH 770

Query: 814  HLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASL 873
            +LR K  SN  L +     +     I  K      WLP  Y + K               
Sbjct: 771  NLRQKMTSNKALLQ-NALAIELPPYIQGKPLSLKLWLPTNYTLDK--------------- 814

Query: 874  WNCLSLPNLKELSPEKVLEIIKQKCVDL----DCTVDMNVQSVVPYNL--VTQHSIPDKS 927
                  P   +   E     +    VD     D T     + V   N   VTQ  + DK+
Sbjct: 815  ----CPPIAHQRHDEHAASAVDTTVVDTRPHPDTTQARTKKKVRKQNQDQVTQW-LGDKT 869

Query: 928  IADCVEALIGAYLIECGPRGALLFMSWL-------------GLKVIPPVTNPESKHLSDV 974
            IAD VEA+IGA  +  G   AL  M  L             G KV+     P  +  + +
Sbjct: 870  IADVVEAIIGAAYLSGGCDVALRVMKALTIPLNSVEQWSDFGRKVL----TPPPRVSAAL 925

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
                 +  E+ +  + K    L QA+TH S      T  YQRLEFLGDAILD+++ RH+Y
Sbjct: 926  PPRSLEFVEKLVRRKVKYPHLLAQALTHGSIQGYDAT-TYQRLEFLGDAILDFMVVRHIY 984

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF--------- 1085
              + + SPG +T L+SA+V N   A++ V  G +   +HL    +EV + F         
Sbjct: 985  HRDESLSPGVMTILKSAMVANSALAAICVWSGLN---EHLLVDDYEVSESFKKYARDLKA 1041

Query: 1086 ----VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                V+  +  D T   +++L          I  PKAL D+ ES+ GA+Y+  G 
Sbjct: 1042 KEQEVRTASLRDGTPIGQFWL---------HITPPKALSDVVESIIGALYISDGF 1087



 Score = 40.4 bits (93), Expect = 6.3,   Method: Compositional matrix adjust.
 Identities = 36/133 (27%), Positives = 63/133 (47%), Gaps = 22/133 (16%)

Query: 319 FYVAEIMTNVHPRSMFPS---RTNTYQTFEEYYS--LKYGLQIQNLEQPLLDVDHTSCRL 373
           +YV  + T++ P+S  P    R   +++  +Y     K    ++N EQPL+ V       
Sbjct: 594 YYVESVRTDLKPKSK-PDDALREAEFESILDYVKDRRKDFEGLKNYEQPLIQVSKVPNLS 652

Query: 374 NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
           N L P         L T +E  +   R        L+PEL   +  PA+++R ++ LPS+
Sbjct: 653 NLLNP---------LKTAAEVGKPTAR-------YLIPELTAKYTIPANVYRMALLLPSV 696

Query: 434 LYRLNALLLADEI 446
             R++ +L+A E+
Sbjct: 697 TQRIDNILIAKEL 709


>gi|395330621|gb|EJF63004.1| hypothetical protein DICSQDRAFT_83832 [Dichomitus squalens LYAD-421
            SS1]
          Length = 1330

 Score =  122 bits (305), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 132/479 (27%), Positives = 202/479 (42%), Gaps = 70/479 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDSFLK   + F Y T P+VH G L   R   +SN  + + G  +V   S +  
Sbjct: 828  ERLEFLGDSFLKVVASNFCYATMPSVHVGDLHQARQSIISN-KVLQEGATRVGVPSYVQH 886

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNC-LSLPNLKELSPEKVLEIIKQKCVD 900
            K      W PP       L TA +         N  + +        +K     KQ+ +D
Sbjct: 887  KRFVAKLWQPP-------LSTANVAEELKTEGGNGDVEMTGEAPEKKDKGKRSKKQRQLD 939

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
               T+ M                 DK IAD VEA++ A  +  G   AL     L + + 
Sbjct: 940  EQNTLWMG----------------DKIIADVVEAILAASFLSGGHEVALEAARRLQVPI- 982

Query: 961  PPVTNPESKHLSD---------------VLLDGFDK-----FEESINYRFKDKSYLLQAM 1000
                 P     SD               V+     +      E+  N +F     L QA+
Sbjct: 983  -----PNVAQWSDYARLAAHHAAREQTVVMASAPSRMTISVLEKLFNSKFNRLDLLGQAL 1037

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS--ALVNNIIF 1058
            TH S F       Y RLEF+GDAILD+L++R+++E     SPG LT L++  A+V+N   
Sbjct: 1038 THTSAFSGAEGTSYDRLEFIGDAILDFLVSRYIWERHPYLSPGGLTMLKANGAMVSNQTL 1097

Query: 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKM-----QAENDFTLNQEYYLMEGECDEAEDI 1113
            A+  V +G   + +  S  L   IQ+++       + E DF   ++   + G+      +
Sbjct: 1098 AAFCVHVGLQQYLRMESKDLSTAIQKYIDFLEELRKKEYDFASREQR--LPGQYWLDMPM 1155

Query: 1114 EVPKALGDLFESVAGAIYLDS-------GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIR 1166
            E PK L D+ ES+ GA+Y+         G   +TV+K + E     ++ LS + PK  + 
Sbjct: 1156 EPPKCLSDVVESLIGALYVSDNFFEVGVGRFFETVFKPFLE-AHVRLQTLSTN-PKITLL 1213

Query: 1167 ELLELEP-ENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            ELL+ E  +N    K ++      V++ V + GK        +  IA    +  AL  L
Sbjct: 1214 ELLQAEGCQNNAVVKQQQSRQNMPVQMDVVIHGKVIASATDSSAVIATRKVSLTALDTL 1272



 Score = 40.4 bits (93), Expect = 7.2,   Method: Compositional matrix adjust.
 Identities = 103/469 (21%), Positives = 182/469 (38%), Gaps = 84/469 (17%)

Query: 33  KEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPV 92
           + DD+ +    I  P ++ L  +++G    TK  A R A  +AC+ L  +  +D+   P 
Sbjct: 414 RGDDAAVLRYIISFPKSTALA-AISGPYCSTKWEAKREACHQACKELVRVGIMDHRHFPQ 472

Query: 93  TKEFINLYENTEPVVPKTP---EIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYA 149
           ++        +     +TP   +++T  +++ +   Y +++   + N + S   P  LY 
Sbjct: 473 SRRVPAGQSGSTDTNGETPAPRDVKT-ANTSAKTHGYPRKIPDFWPNTQSS--PPTILYP 529

Query: 150 VKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELI 209
                T   PD     G ++H P      + +LT   +P V  F +F       V     
Sbjct: 530 -----TVVAPDNM---GEEVHAP------VLLLTRAPLPHVPDFSLFFSGLRTTVRF-YK 574

Query: 210 DKNVVLSEENLSN----TLIFMDYLFTKVLK--LKKYLMLFDPNCSENSYFIVP------ 257
              + +++  L      TL     L  K L   L   L  F P  S     I P      
Sbjct: 575 AAPITITDAQLKALHGYTLRVTKSLTNKPLDCPLGDLLCYFAPLDSSWHSSISPHWPLLS 634

Query: 258 ----TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQ 313
                + D+ Q+  D+  + L+         ++P  ER          +DA+V+     Q
Sbjct: 635 VEGHVLWDAVQLAADYFAIRLLDS-------NVPIDERA---------KDAIVL---DRQ 675

Query: 314 FEPTY-FYVAEIMTNVHP--RSMFPSRTNTYQTFEEYYSLK----YGLQIQNLEQPLLDV 366
            E T   +V ++  ++ P  ++    R   YQ F EY   +     GL+ +N  QPL++V
Sbjct: 676 VEFTMRHFVIKVRHDLTPLCKADDSPREAGYQNFLEYCKARCKDFQGLEDEN--QPLIEV 733

Query: 367 DHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRK 426
                 +N            NL  TS       +  L   + L+PE+C     PAS +R 
Sbjct: 734 SAVPGVIN------------NLHPTSAPPTPPAKAPL---KYLIPEMCYKFTIPASTFRT 778

Query: 427 SVSLPSILYRLNALLLADEIRTAVASEIGLGK---VILDEKVEWPPFNF 472
              +PSI+ ++ + LL  E+   +     + +   + L     W  FN+
Sbjct: 779 LWLMPSIMNKIESYLLVKELNARLFHNAVIEQQLLIALSTPAAWTEFNY 827


>gi|403171947|ref|XP_003331125.2| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169644|gb|EFP86706.2| hypothetical protein PGTG_13088 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1453

 Score =  121 bits (304), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 116/460 (25%), Positives = 186/460 (40%), Gaps = 99/460 (21%)

Query: 747  PGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPN 806
            P  S  HGI   T       +D+Q             LET+GD+FLK A ++ +Y ++  
Sbjct: 938  PTISLLHGIQALTPPGGGVPWDYQ------------TLETLGDAFLKLATSVHVYLSHLK 985

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
              EG +SH+RS+ V N                                    YL    I+
Sbjct: 986  KGEGDMSHVRSRSVDN-----------------------------------AYLRRKAIQ 1010

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  PAS+ +       ++ +P++                                 IP +
Sbjct: 1011 ANLPASILSQHPSTRRRQGAPQREFS----------------------------RKIPKR 1042

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGL---KVIPPVTNPESKHLSDVLLDGFD--- 980
             ++D VEAL+GA  +  G    L   + L L      P    P +  L  +  D  +   
Sbjct: 1043 VLSDVVEALLGAGFLTGGIELGLKIGTALDLCFGGTTPWSERPVNIGLESITHDALEPSI 1102

Query: 981  -----KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                   E+ I Y FK+K  L+QA+TH S   + +T+CY+R E+LGDA++D  I  H Y+
Sbjct: 1103 LLKCQALEKKIGYVFKEKLLLVQALTHRSAN-SFMTNCYEREEWLGDAVIDMWIVEHAYK 1161

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                 +   LT  R+ +V+N     LA++ LG      H S    +     +  +A   F
Sbjct: 1162 RFDHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAI--EAIKPF 1219

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
               +EY+          D   PK L D+ E++ GA+++DSG +L T ++    I +  I 
Sbjct: 1220 AKIEEYFSTIDNLFVVFD--PPKILNDVLEAIVGAVFIDSGFNLHTAYRTLDIIFEDVIP 1277

Query: 1155 RLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
             LS  V + P+  +L L  +        + A+ RR+  T+
Sbjct: 1278 GLSRLVARDPLSTMLRLRDQY-------QCAELRRISTTI 1310


>gi|443922458|gb|ELU41905.1| dicer-like protein 1 [Rhizoctonia solani AG-1 IA]
          Length = 1426

 Score =  120 bits (302), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 120/412 (29%), Positives = 170/412 (41%), Gaps = 95/412 (23%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            RL   GD+F+KYA + +LY   P    G L   R K V+N +L+ LG Q +     I + 
Sbjct: 939  RLIYAGDTFIKYAASAYLYGVEPTAPSGVLHSKRQKMVNNRSLW-LGAQALGLPPCIQSD 997

Query: 843  -FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F P+  W+ P   + K         GF         L N ++ S               
Sbjct: 998  VFRPK-QWVIPNVLISKKSPIHGENPGFTGQA----QLLNSRQYS--------------- 1037

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG----- 956
                                 IP K+IAD VEA+IGA L+  G   A      LG     
Sbjct: 1038 -------------------RQIPPKTIADVVEAMIGAALLSGGEELAFSVAKTLGFDTLK 1078

Query: 957  ----LKVIP-----PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMT------ 1001
                L VI       +T  ES H  + L DG  K    I     +   LLQAM       
Sbjct: 1079 TCDWLDVISYAPNKSMTMKESDHKGETL-DGLIKI---IGVSLDNPELLLQAMVRIFLSI 1134

Query: 1002 ------------HASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
                        HAS  +   ++ Y+RLEFLGDA+LD L+ +  + DE   SP ++T ++
Sbjct: 1135 IKLEVQLRTVQQHAS--MARSSESYERLEFLGDAVLDMLVVQSFFSDEEEWSPHSMTLIK 1192

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV------KMQAENDFTLNQEYYLM 1103
            S++V+N   A + +  G H +  H    L + I  F+      K  A  D     +Y+  
Sbjct: 1193 SSMVSNRALAIICIESGLHQYLMHDINSLAQSIVTFIDEVQKCKQIARTD-AQRLKYW-- 1249

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                     +  PKALGD+ ES+ GAIY+ SG S+  V  VY  ++K   +R
Sbjct: 1250 -------SKLVAPKALGDVVESLLGAIYISSGFSITRVKTVYDRVLKPFYDR 1294



 Score = 40.0 bits (92), Expect = 9.3,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 42/91 (46%), Gaps = 19/91 (20%)

Query: 356 IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCL 415
           IQNL+QPL++          L P   N+      T  + T             LVPE+C 
Sbjct: 819 IQNLQQPLIEAT--------LLPGLANQLNPQEPTVQKTT-----------NYLVPEICY 859

Query: 416 IHPFPASLWRKSVSLPSILYRLNALLLADEI 446
           +   PA  +R +  LPS+++ +  +L+A E+
Sbjct: 860 VSSIPAPTFRTASLLPSVIWHIENVLIAKEV 890


>gi|339261112|ref|XP_003368069.1| conserved hypothetical protein [Trichinella spiralis]
 gi|316963063|gb|EFV48890.1| conserved hypothetical protein [Trichinella spiralis]
          Length = 654

 Score =  120 bits (302), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 101/377 (26%), Positives = 170/377 (45%), Gaps = 50/377 (13%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
           + +A  ++ RYC +L  D F   +P  ++  I  +D SI +  +++LP  SPLK+ + G 
Sbjct: 315 LSSAHNVIKRYCNKLRKDRFADSSPKFSVQTILNKDLSISYVATVQLPTTSPLKKKIEGK 374

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPD- 118
            M    LA   AA E  ++L+ + EL+  L+P             PV  +  EIE   D 
Sbjct: 375 PMQNAKLAEMAAAFETAKMLHAMGELNEFLIP-------------PVTVRK-EIELKEDE 420

Query: 119 ---STKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
              S   R +Y K +        P  +   YLYA+                  I   E+ 
Sbjct: 421 QFFSISSRSYYLKEVPDALYKAIPRADQKSYLYAI-----------------SISSIESF 463

Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEE----NLSNTLIFMDYLF 231
              L IL +K I  +  F +FT    ++V IE +++    + +       +  IF +YLF
Sbjct: 464 LPRLGILVSKPIGNLPGFSVFTDESYIDVEIEFVEETSYSAHQLDILTSFHCCIFKNYLF 523

Query: 232 TKVLKLKKYLMLFDPNCSENSYFIVPTVSD-SEQIVIDWKFMTLISEHHNDVIQDIPEKE 290
                 ++   +FDP  +  SY IVP   + + +  +D      I     DV   IP++ 
Sbjct: 524 R-----EEEDFIFDPENAACSYLIVPLKCEYNSKCSVDLSTAEKIINWSKDV-SHIPQQR 577

Query: 291 RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNV-HPRSMFPSRTNTYQTFEEYYS 349
            E F+ + S + +AVV PWY+N+ +  ++Y    + N   P S FP +   Y++F EY+ 
Sbjct: 578 SEKFIMNSSSYFNAVVYPWYKNKNDRDFYYFVTAVDNTCSPMSPFPLK--MYRSFAEYFE 635

Query: 350 LKYGLQIQNLEQPLLDV 366
           +   +++ +  QPL+ V
Sbjct: 636 VTKQVKVLDKNQPLISV 652


>gi|403171941|ref|XP_003331118.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169641|gb|EFP86699.2| hypothetical protein PGTG_13081 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1431

 Score =  120 bits (301), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 189/436 (43%), Gaps = 103/436 (23%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GD+FLK A ++ +Y ++    EG +SH+RSK V N                     
Sbjct: 962  LETVGDAFLKLATSVHVYLSHLRKGEGDMSHVRSKSVDN--------------------- 1000

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
                           YL    I+A  P+S+         +    ++  +   +   +L  
Sbjct: 1001 --------------DYLRRKAIQANLPSSILG-------QRFRTDRFRDAQTEDGKELP- 1038

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                        N     ++P + ++D VEAL+GA  +  G          LGLK+   +
Sbjct: 1039 ------------NGNFSRNVPRRVLSDVVEALLGAGFLTGGIE--------LGLKIGTAL 1078

Query: 964  ------TNPESKHLSDVLLDG--FDKF-----------EESINYRFKDKSYLLQAMTHAS 1004
                  T P ++   ++  +G   DK            EE I Y FK+K  L+QA+TH S
Sbjct: 1079 DLCFGGTTPWNERTLNIAFEGTAHDKLASPILLKCQALEEKIGYVFKEKLLLVQALTHRS 1138

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV- 1063
               + +T+CY+R E+LGDA++D  I +H Y+     +   LT  R+ LV+N     LA+ 
Sbjct: 1139 AN-SFMTNCYEREEWLGDAVVDMWIVQHAYKRFDNATAEELTLARAKLVSNGSLGFLAIK 1197

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV----PKAL 1119
            +LG H    H S    +     +K  A   FT  +E++         E++ V    PK L
Sbjct: 1198 KLGLHKMIMHKSESFEQACVEAIK--AIEPFTSIEEFF------SNLENLFVVFDPPKIL 1249

Query: 1120 GDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
             D+ E++ GA+++DS   L TV++   +I +     LS  V + P+  +L L  +     
Sbjct: 1250 NDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIVARDPLSTMLRLRDQY---- 1305

Query: 1180 KPEKLADGRRVRVTVE 1195
               + A+ RRV  T++
Sbjct: 1306 ---QCAELRRVSTTIK 1318


>gi|403179645|ref|XP_003337958.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375165150|gb|EFP93539.2| hypothetical protein PGTG_19535 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1431

 Score =  120 bits (300), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 115/436 (26%), Positives = 189/436 (43%), Gaps = 103/436 (23%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GD+FLK A ++ +Y ++    EG +SH+RSK V N                     
Sbjct: 962  LETVGDAFLKLATSVHVYLSHLRKGEGDMSHVRSKSVDN--------------------- 1000

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
                           YL    I+A  P+S+         +    ++  +   +   +L  
Sbjct: 1001 --------------DYLRRKAIQANLPSSILG-------QRFRTDRFRDAQTEDGKELP- 1038

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV 963
                        N     ++P + ++D VEAL+GA  +  G          LGLK+   +
Sbjct: 1039 ------------NGNFSRNVPRRVLSDVVEALLGAGFLTGGIE--------LGLKIGTAL 1078

Query: 964  ------TNPESKHLSDVLLDG--FDKF-----------EESINYRFKDKSYLLQAMTHAS 1004
                  T P ++   ++  +G   DK            EE I Y FK+K  L+QA+TH S
Sbjct: 1079 DLCFGGTTPWNERTLNIAFEGTAHDKLASSILLKCQALEEKIGYVFKEKLLLVQALTHRS 1138

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV- 1063
               + +T+CY+R E+LGDA++D  I +H Y+     +   LT  R+ LV+N     LA+ 
Sbjct: 1139 AN-SFMTNCYEREEWLGDAVVDMWIVQHAYKRFDNATAEELTLARAKLVSNGSLGFLAIK 1197

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV----PKAL 1119
            +LG H    H S    +     +K  A   FT  +E++         E++ V    PK L
Sbjct: 1198 KLGLHKVIMHKSESFEQACVEAIK--AIEPFTSIEEFF------SNLENLFVVFDPPKIL 1249

Query: 1120 GDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFS 1179
             D+ E++ GA+++DS   L TV++   +I +     LS  V + P+  +L L  +     
Sbjct: 1250 NDVLEAIVGAVFIDSRFDLPTVYRTIDKIFEDVTPGLSRIVARDPLSTMLRLRDQY---- 1305

Query: 1180 KPEKLADGRRVRVTVE 1195
               + A+ RRV  T++
Sbjct: 1306 ---QCAELRRVSTTIK 1318


>gi|358366696|dbj|GAA83316.1| hypothetical protein AKAW_01431 [Aspergillus kawachii IFO 4308]
          Length = 1404

 Score =  119 bits (298), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 109/416 (26%), Positives = 175/416 (42%), Gaps = 93/416 (22%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 947  QIHVQRGMGRNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAA 1006

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   + + +  F  R  W P G                       L L   K+ S + 
Sbjct: 1007 VKKEIYKYIRSRGFS-RHTWYPEG-----------------------LKLLQGKDHSRKA 1042

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              E                          ++H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1043 TTE--------------------------SKHALAEKTIADVCEALIGASLLSGGPEHRF 1076

Query: 950  LFMSWLGLKVIPPVTNPESKHLSD----------------VLLDGFD-----KFEESINY 988
                 + +K +  + N  S H+++                   DG +     K EE ++Y
Sbjct: 1077 D----MAVKAVTTLVNSPS-HMAERWKDYISLYTIPKYQRRAADGAEIHLCRKVEEKLSY 1131

Query: 989  RFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            RF+  + L  A TH SY        CYQRLEFLGD+++D +    L+       P  LT+
Sbjct: 1132 RFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARYPDRDPQWLTE 1191

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
             + A+V+N    +LAV+LG H   K+ S  L   I ++            +E    EGE 
Sbjct: 1192 HKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYA-----------EEIQTAEGES 1240

Query: 1108 DEAEDI-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            + A D      + PK L D+ E+  GA+++DSG + + + + + + +K   E +++
Sbjct: 1241 ESAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSGFNFEVIEEFFRDHIKPFFEDMAI 1296


>gi|357462175|ref|XP_003601369.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355490417|gb|AES71620.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 565

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 81/251 (32%), Positives = 136/251 (54%), Gaps = 24/251 (9%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              + E  + Y FK+K  L +A TH +Y   N L+  Y+RLE++GD++L+ +IT+  ++  
Sbjct: 227  LHEVEAILEYEFKNKLLLEEAFTHGTYGAENGLS--YERLEYVGDSVLNLMITKEQFQAY 284

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
               +PG LT LR+A V+    A +A++ G H + +H  P L + IQ F K  AE     N
Sbjct: 285  PTLAPGHLTRLRAANVDTEKLARVAIKHGLHRYLRHKKPLLGDQIQEFTKGIAEYPLHSN 344

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
                           I+VPK+L D+ ES  GAI++D G S++TVWKV+ ++++  I+   
Sbjct: 345  GL-------------IDVPKSLADIVESTIGAIFVDCGSSVETVWKVFKKLLEPIID--P 389

Query: 1158 VSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTV--EVFGKGSYKGIGRNYCIAKC 1214
             ++ + P+ EL E+ + ++ +    +   +  R+ V +  E  G G Y   G    IA  
Sbjct: 390  NTIQRHPVTELHEVCQKKSLKLQFRDLWKETMRIEVLINEEFVGSGVY---GSKKEIAHN 446

Query: 1215 TAAKCALKHLK 1225
             AAK AL++++
Sbjct: 447  RAAKNALENME 457


>gi|224088236|ref|XP_002308384.1| dicer-like protein [Populus trichocarpa]
 gi|222854360|gb|EEE91907.1| dicer-like protein [Populus trichocarpa]
          Length = 1588

 Score =  119 bits (297), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/302 (33%), Positives = 141/302 (46%), Gaps = 52/302 (17%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV---IPPVTNPESKHLSDVLL 976
             H + +K+++D VEALIGA+L++ G + A+ F+ W+G+KV      V N      +  +L
Sbjct: 1115 HHWLHNKTVSDVVEALIGAFLVDSGFKAAIAFLRWIGIKVDFDDSQVINICQASRTYAML 1174

Query: 977  D---GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLIT--- 1030
            +        E  + ++F  K  LLQA  H S+            EF G  IL + +T   
Sbjct: 1175 NPSMDLATLENLLGHQFLYKGLLLQAFVHPSH--------KNGGEF-GVMILQFAMTLMF 1225

Query: 1031 --------RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
                    R  Y   +   PG LTDLRS LVNN  FAS+AV   FH +    S  L    
Sbjct: 1226 PPEIGVPWRCFYPKMK---PGHLTDLRSVLVNNRAFASVAVDRSFHEYLICDSDALSAAT 1282

Query: 1083 QRFVKMQAENDF--TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            ++FV      DF  T   E  L+EG        + PK LGDL ES  GAI LD+G  L+ 
Sbjct: 1283 KKFV------DFVRTPKSERRLLEGP-------KCPKVLGDLVESSVGAILLDTGFDLNH 1329

Query: 1141 VWKVYYEIMK--SEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEVF 1197
            +WK+    +   S    L +    +P+REL EL +  N  F  P     GR   V V + 
Sbjct: 1330 IWKIMLSFLDPISSFSNLQI----NPVRELKELCQSHNWDFEVPAS-KKGRTFSVDVTLS 1384

Query: 1198 GK 1199
            GK
Sbjct: 1385 GK 1386


>gi|393246311|gb|EJD53820.1| ribonuclease III [Auricularia delicata TFB-10046 SS5]
          Length = 1227

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 101/379 (26%), Positives = 172/379 (45%), Gaps = 37/379 (9%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK+  +  L+   P   E +L   R    SN  L +  ++      ++  
Sbjct: 738  QRLELLGDSVLKFLASAALFVRKPTSSESELHLGRQNIFSNRALTQAARRAGLPPFILTK 797

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL--EIIKQKCV 899
             F  + +W+PP Y   +     L E                  L PEKV   ++ +++  
Sbjct: 798  PFSIK-SWIPPNYDFDRAPAKPLSEE---------------DALIPEKVAAYKLAREREQ 841

Query: 900  DLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV 959
              D    +  Q        ++H I +K+IAD  EA++GA  +  G    L     L +K+
Sbjct: 842  KADAQARVKRQ-----QDASEHWIGEKTIADVTEAILGAAFLTGGKNLVLRAAKRLAVKL 896

Query: 960  IPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
               V    N   +    +  +  +  E  +    +    + QA+TH S   ++L   YQR
Sbjct: 897  QDYVDVKANIPGRSHVQLRCESLEHVERLLGRPIQRPHLVAQALTH-SVIDSSLATSYQR 955

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
            LEFLGDAILD L+ R+++  E+   P  LT L++A+V+N   A++ V+ G H    H SP
Sbjct: 956  LEFLGDAILDLLVVRYIWRYEKL-DPEALTLLKAAMVSNSTLAAVCVQCGLHKHIIHASP 1014

Query: 1077 GLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAE----DIEVPKALGDLFESVAGAIY 1131
             L   I  +VK + +  D    +E  L + E  +      ++E PK L DL ES+ GA++
Sbjct: 1015 SLGVKIDNYVKALHSARD----KERALAQSEVRQPVQYWLELEHPKPLSDLIESLLGALF 1070

Query: 1132 LDSGMSLDTVWKVYYEIMK 1150
            +    ++  +   +  +++
Sbjct: 1071 ISENYAIAPLEAFFENVLR 1089


>gi|403179647|ref|XP_003337961.2| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375165151|gb|EFP93542.2| hypothetical protein PGTG_19538 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1460

 Score =  118 bits (296), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 117/461 (25%), Positives = 190/461 (41%), Gaps = 93/461 (20%)

Query: 747  PGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPN 806
            P  S  HGI   T       +D+Q             LET+GD+FLK A ++ +Y ++  
Sbjct: 938  PTISLLHGIQALTPPGGGVPWDYQ------------TLETLGDAFLKLATSVHVYLSHLK 985

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIE 866
              EG +SH+RS+ V N                                    YL    I+
Sbjct: 986  KGEGDMSHVRSRSVDN-----------------------------------AYLRRKAIQ 1010

Query: 867  AGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDK 926
            A  PAS+ +       +    ++  +   +   +L              N      IP +
Sbjct: 1011 ANLPASILS-------QRFRTDRFRDPQTEDGKELP-------------NGNFSRKIPKR 1050

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGL---KVIPPVTNPESKHLSDVLLDGFD--- 980
             ++D VEAL+GA  +  G    L   + L L      P    P +  L  +  D  +   
Sbjct: 1051 VLSDVVEALLGAGFLTGGIELGLKIGTALDLCFGGTAPWSERPVNIGLESITHDALEPST 1110

Query: 981  -----KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                   EE I Y FK+K  L+QA+TH S   + +T+CY+R E+LGDA++D  I  H Y+
Sbjct: 1111 LLKCQALEEKIGYVFKEKLLLVQALTHRSAN-SFMTNCYEREEWLGDAVIDMWIVEHAYK 1169

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                 +   LT  R+ +V+N     LA++ LG      H S    +     +  +A   F
Sbjct: 1170 RFDHATAEELTLARAKVVSNGSLGFLALKKLGLQEIIMHASENFEQACTEAI--EAIKPF 1227

Query: 1095 TLNQEYYLMEGECDEAEDI-EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
               +EY+      D    + + PK L D+ E++ GA+++DSG +L + ++    I +  I
Sbjct: 1228 AKIEEYF---STIDNLFVVFDPPKILNDVLEAIVGAVFVDSGFNLQSAYRTLDIIFEDVI 1284

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV 1194
              LS  V + P+  +L L  +        + A+ RR+  T+
Sbjct: 1285 PGLSRLVARDPLSTMLRLRDQY-------QCAELRRISTTI 1318


>gi|224064945|ref|XP_002301611.1| predicted protein [Populus trichocarpa]
 gi|222843337|gb|EEE80884.1| predicted protein [Populus trichocarpa]
          Length = 303

 Score =  117 bits (292), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 86/265 (32%), Positives = 140/265 (52%), Gaps = 32/265 (12%)

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
             K  +D + D  D+ EE ++Y+FK K  L +A+THAS+     +  Y+RLE++GD++L+ 
Sbjct: 44   GKQTTDWVTD-LDEVEEILHYKFKSKKLLEEALTHASFSDQCFS--YERLEYVGDSVLNL 100

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            L T+  Y       PG LT LRSA V+    A +A++   H + +H  P L E I+ F  
Sbjct: 101  LFTKEQYFLYPDLPPGPLTRLRSANVDTEKLARVAIKHKLHRYLRHKMPLLEEQIREF-- 158

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
             QA  D+ L+               +E PKAL D+ E+  GA+++DS  S+D VWK++ +
Sbjct: 159  SQAILDYPLHSNGL-----------VETPKALADIVEAAIGAVFIDSNFSIDVVWKIFKD 207

Query: 1148 IMKSEIERLSVSVPKSPIRELLEL-EPENARFSKPEKLADGRRVRVTVEVF------GKG 1200
            +++  I + ++ V   P+ EL E+ +  N +     K  D  +  +  +VF      G+G
Sbjct: 208  LLEPIISQETLKV--HPVTELYEVCQKRNLKV----KFVDLWKENMAFDVFIDDQFVGRG 261

Query: 1201 SYKGIGRNYCIAKCTAAKCALKHLK 1225
            +Y   G    IA   AAK AL +++
Sbjct: 262  TY---GLKKEIAHNRAAKNALNNIR 283


>gi|320037410|gb|EFW19347.1| hypothetical protein CPSG_03731 [Coccidioides posadasii str.
            Silveira]
          Length = 1465

 Score =  116 bits (290), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 195/493 (39%), Gaps = 95/493 (19%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   P+  E      R   V N NLFK  
Sbjct: 1014 QIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTA 1073

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E + +  F  R      G++                               PE 
Sbjct: 1074 VRFKLYEFIRSQSFSRR------GWY-------------------------------PEG 1096

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA----------Y 939
             L +++ K      T +             +H++ DK+IAD  EALIGA          +
Sbjct: 1097 -LTLLQGKGQSKGATEN-------------KHALADKTIADVCEALIGACCLLASKNHRF 1142

Query: 940  LIECGPRGALL------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
             I      AL+       ++W     +  +   ++  +    LD   + ++ + Y FK  
Sbjct: 1143 DIAVKAVTALVSSDDHNVLNWEQYSRLYSLPKYQTAVVDAAELDLAAQVKKKLGYVFKYP 1202

Query: 994  SYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
              L  A TH SY        CYQRLEFLGDA+LD     H+Y       P  LT+ + A+
Sbjct: 1203 KLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAM 1262

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAED 1112
            V+N    S+AVRLG H    H S  L   I  +V           +E    E E  ++ D
Sbjct: 1263 VSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYV-----------EEIEAAELESGDSPD 1311

Query: 1113 I-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV------SVP 1161
                  + PK L D+ E+  GAI++DS  S + V + + + +K   E +++        P
Sbjct: 1312 AWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHP 1371

Query: 1162 KSPIRELLELEPENARF-----SKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
             + +   L ++   + +       P     G RV   V V  +   +G+  +   AK  A
Sbjct: 1372 TTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAKLKA 1431

Query: 1217 AKCALKHLKSAKP 1229
            ++ AL  L+   P
Sbjct: 1432 SEAALSKLEGLPP 1444


>gi|303314275|ref|XP_003067146.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
 gi|240106814|gb|EER25001.1| Type III restriction enzyme, res subunit family protein [Coccidioides
            posadasii C735 delta SOWgp]
          Length = 1487

 Score =  116 bits (290), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 195/493 (39%), Gaps = 95/493 (19%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   P+  E      R   V N NLFK  
Sbjct: 1036 QIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMCLVCNQNLFKTA 1095

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E + +  F  R      G++                               PE 
Sbjct: 1096 VRFKLYEFIRSQSFSRR------GWY-------------------------------PEG 1118

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA----------Y 939
             L +++ K      T +             +H++ DK+IAD  EALIGA          +
Sbjct: 1119 -LTLLQGKGQSKGATEN-------------KHALADKTIADVCEALIGACCLLASKNHRF 1164

Query: 940  LIECGPRGALL------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
             I      AL+       ++W     +  +   ++  +    LD   + ++ + Y FK  
Sbjct: 1165 DIAVKAVTALVSSDDHNVLNWEQYSRLYSLPKYQTAVVDAAELDLAAQVKKKLGYVFKYP 1224

Query: 994  SYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
              L  A TH SY        CYQRLEFLGDA+LD     H+Y       P  LT+ + A+
Sbjct: 1225 KLLRSAFTHPSYPSAWARVPCYQRLEFLGDALLDMACVEHIYHKHPDKDPQWLTEHKMAM 1284

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAED 1112
            V+N    S+AVRLG H    H S  L   I  +V           +E    E E  ++ D
Sbjct: 1285 VSNKFLGSVAVRLGLHSHLNHFSTSLQSQITNYV-----------EEIEAAELESGDSPD 1333

Query: 1113 I-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV------SVP 1161
                  + PK L D+ E+  GAI++DS  S + V + + + +K   E +++        P
Sbjct: 1334 AWTLTSDPPKCLPDMVEAYIGAIFIDSNFSFEVVEEFFQKFLKKHFEDMTIYDTYANKHP 1393

Query: 1162 KSPIRELLELEPENARF-----SKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
             + +   L ++   + +       P     G RV   V V  +   +G+  +   AK  A
Sbjct: 1394 TTYLHNRLAIDFGCSNYCLKAGEVPYVDGPGTRVLAAVIVHDEVVTEGVASSSRYAKLKA 1453

Query: 1217 AKCALKHLKSAKP 1229
            ++ AL  L+   P
Sbjct: 1454 SEAALSKLEGLPP 1466


>gi|409050172|gb|EKM59649.1| hypothetical protein PHACADRAFT_114689 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1230

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 118/438 (26%), Positives = 188/438 (42%), Gaps = 71/438 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD+ LK  ++ + + T P   EG LS  R + VSN         K+  ++ +A 
Sbjct: 775  ERLELLGDALLKDILSTYFFATMPTKREGALSSARGQVVSN---------KMLHQNAMAA 825

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
               P   W+     V K              LW     P L          + +Q   D+
Sbjct: 826  GMPP---WIQSKPLVVK--------------LWT----PYL----------VARQDAGDV 854

Query: 902  DCTVDMNVQSVVPYNLVTQ--HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-- 957
              + D + +      L  Q    + DK++AD VEA++GA   + G    L  M  L    
Sbjct: 855  GTSND-HRRGKRQKQLEEQDVQWLGDKTVADVVEAVVGAAFHQGGTDNVLRTMKILQFNM 913

Query: 958  ----------KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL 1007
                      +V  P   P  K   D+ +   +  E    ++F   + L +A+TH S   
Sbjct: 914  PEIAEHSDFWRVYAP-NAPSHKTFCDLPVGTSEAVEAITGFKFHTPAILAEALTHGSISN 972

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
              +T  Y RLEFLGD ILD  I  ++++     SPG L+ L++A+V+N+  A++AV  G 
Sbjct: 973  QHMTS-YDRLEFLGDGILDSNIVWYIFKAYPKLSPGGLSLLKAAMVSNLTLAAVAVESGL 1031

Query: 1068 HHFFKHLSPGLHEVIQRFVKMQAENDFTL-NQEYYLMEGECDEAE----DIEVPKALGDL 1122
            +   ++ S    + I   VK+  +  FTL +QEY   E E         +++ PK L DL
Sbjct: 1032 YEHVRYCS----KEIMSAVKLYVQKIFTLRDQEYRDAEAESRLPNQFWLEVDAPKPLADL 1087

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE---RLSVSVPKSPIRELLE-LEPENARF 1178
             E++ GAIY+        V   + ++++   +   RL    P  P   L E L+ E  + 
Sbjct: 1088 VEAIVGAIYVSDRFGTQGVKTFFQKVLRPFYDRHIRLHTLAPH-PGTSLFEFLQAEGCQQ 1146

Query: 1179 SKPEKLADGRRVRVTVEV 1196
                K   G+ VR  V +
Sbjct: 1147 HAMRKTNLGKEVRSEVVI 1164



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 47/145 (32%), Positives = 73/145 (50%), Gaps = 25/145 (17%)

Query: 320 YVAEIMTNVHPRSMFPSRTNTYQ--TFEEYYSLKY----GLQIQNLEQPLLDVDHTSCRL 373
           YV ++  ++ PRS     +   +  T+ +Y   +     GL+ +N  QPL++V       
Sbjct: 631 YVLKLRHDLSPRSKMKEGSAEAEPITYLDYCKSRVKEFQGLKDEN--QPLIEVS------ 682

Query: 374 NFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433
             L P   N    NLA  S++T      +    +LLVPELC     PAS+WR  + LPSI
Sbjct: 683 --LVPPVAN----NLAPASKDTSTVKNPA----RLLVPELCYKFVIPASIWRTVLLLPSI 732

Query: 434 LYRLNALLLADEIRTAVASE-IGLG 457
            + ++ +LL  E+R AV ++ IG G
Sbjct: 733 THMIDRMLLVKEMRVAVFNQSIGEG 757


>gi|269115408|gb|ACZ26274.1| dicer-1-like protein [Mayetiola destructor]
          Length = 227

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/253 (29%), Positives = 126/253 (49%), Gaps = 47/253 (18%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            LLDG+++ E+ +NY F+DKS++LQA +H S+  N +   Y  L+F+GD I++YL+ RHL+
Sbjct: 4    LLDGYEQIEKKLNYTFRDKSFMLQAFSHESFTANDICPNYDSLDFVGDGIINYLLCRHLF 63

Query: 1035 EDERAH-SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
             +     S   +    + L +N  FA++++R G H+FF+ +   L+  +  FVK      
Sbjct: 64   REAGGQFSANEIEFFTNTLKSNCCFATVSIRHGIHNFFRLMDTKLNGSLASFVK------ 117

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                   ++ + +C    D+ +                                IM+ +I
Sbjct: 118  -------FVQKNQCQPINDVMI-------------------------------NIMRRDI 139

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGR-RVRVTVEVFGKGSYKGIGRNYCIA 1212
            E +  + PKS I EL  ++ E A FSKPE +  G+  V+V +  +   ++  I R+  +A
Sbjct: 140  EFICETRPKSAIAELSGMDHE-AYFSKPETIGPGKIMVQVILPNYENQTFSSISRDPNLA 198

Query: 1213 KCTAAKCALKHLK 1225
            K  AAK AL  LK
Sbjct: 199  KWGAAKSALLQLK 211


>gi|296424770|ref|XP_002841919.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295638171|emb|CAZ86110.1| unnamed protein product [Tuber melanosporum]
          Length = 1402

 Score =  115 bits (289), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 110/396 (27%), Positives = 165/396 (41%), Gaps = 90/396 (22%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  L+   G + +RLE +GD FLK A ++ LY  Y    E +L   R   + N  LF   
Sbjct: 949  QVSLQRGMGSNYERLEFLGDCFLKLATSLSLYTAYHADDECELHVKRMVLICNRYLFTKA 1008

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
            K+                        +P+Y++TA    GF    W     P +K L  + 
Sbjct: 1009 KEMK----------------------IPEYIQTA----GFSRRTW----YPKMKLLMGKG 1038

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              +    K                       H + DKSI+D  EALIGA LI+ G  GA 
Sbjct: 1039 TTQHNSSK-------------------EEISHRLADKSISDVCEALIGAALIDKGLDGAT 1079

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKF---------------------EESINY 988
              ++ +       +  PE  H   V  D ++ +                     EE + Y
Sbjct: 1080 QIVTAI-------LRTPE--HSQKVWADYYNCYTKPAYQLQEPSPSHIRVAEDIEELVGY 1130

Query: 989  RFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            +FK    L+ A+TH S  F       YQRLEFLGDA+LD +  R++++      P  LT+
Sbjct: 1131 KFKHPRLLISALTHPSLPFTWDRVPSYQRLEFLGDAVLDLVCVRYMFQKYPHADPQWLTE 1190

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF-VKMQAENDFTLNQEYYLMEGE 1106
             + A+V+N     +AV +GFH   + +   L   I+ + V +Q   D   N       G 
Sbjct: 1191 HKMAMVSNKFLGMVAVEMGFHRKLRRMGSVLDHAIREYEVDIQ---DAKANS-----NGA 1242

Query: 1107 CDEAEDIEV-PKALGDLFESVAGAIYLDSGMSLDTV 1141
             D    ++  PKAL D+ E+  GA+++DSG   + V
Sbjct: 1243 VDFWTSLKAPPKALPDVLEAFIGAVFVDSGFQYNIV 1278



 Score = 44.7 bits (104), Expect = 0.34,   Method: Compositional matrix adjust.
 Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 5/91 (5%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
           M++++ I+  Y   LP +    L P+ T+  + E     F   + LP  SP++  + G  
Sbjct: 519 MNSSMLILFHYTQLLPQEDNELLQPLFTVRRVSEG----FISEVTLPTLSPVQH-IEGAP 573

Query: 61  MPTKLLAWRIAAMEACRVLYELKELDNDLMP 91
           MPTK  A + A+   C  L    ELD +LMP
Sbjct: 574 MPTKRAAKQSASFFTCLELRRKGELDENLMP 604


>gi|313212467|emb|CBY36441.1| unnamed protein product [Oikopleura dioica]
          Length = 2196

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 135/500 (27%), Positives = 210/500 (42%), Gaps = 96/500 (19%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            RLE  GDSF+K A T  LY  Y +  +G+L+  R   +SN N  KL K ++   S +   
Sbjct: 1691 RLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYISNANFLKLLKLRLSDGSCLQ-- 1748

Query: 843  FEPRDNWLPPGYFVPKYLE--------TALIEAGFPASLWNCLSLPNLK---ELSPEKVL 891
                         +P+Y+         + +I A      +N    PN +   +L      
Sbjct: 1749 -------------IPRYMNCYDNSRKTSGVIRAPGYVYSYNENFCPNAQPWYKLDDNGDE 1795

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLV---TQHSIPDKSIADCVEALIGAYLIECGPRGA 948
              I     D    V  N +    +N +   ++    DK  AD VE+LIGAYL+  G + A
Sbjct: 1796 TEIFPPMTDCSQFVSENFRDT-HFNYMFFDSKDKRVDKKTADVVESLIGAYLVTGGEKMA 1854

Query: 949  LLFMSWLG-LKVIPPVTNPESKHLSDVLLDG-------FDKFEESINYRFKDKSYLLQAM 1000
              F+  L  L  +   ++PE   L + L++         D+ +  + Y FK       A+
Sbjct: 1855 ARFVIMLNNLYKMTVDSSPE--FLEEDLVEPDPRTQSIIDELQNELEYTFKTPHLCRLAL 1912

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH-SPGTLTDLRSALVNNIIFA 1059
                Y  +   D ++RLEFLGDA+LDYL+   LY    A    G LTDL+ ++ +N +F 
Sbjct: 1913 AKKKYTKDP-KDNFERLEFLGDAVLDYLVVDELYNRRSAALDSGQLTDLKQSITSNNLFG 1971

Query: 1060 SLAVRLG---------------------FHHFFKHLSPGLHEV-----IQRFVKMQAEND 1093
            SLA  +G                        F   L+   H V     ++R ++    N+
Sbjct: 1972 SLAFCMGLPQSTLMKASAAKDHISCMYKLEQFKNLLNKPKHGVPLNPDLKRVLEKANWNN 2031

Query: 1094 FTLNQ----EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE-- 1147
             T N+      YL+          ++PK  GD+FES+ GA++LD    L  +W +Y    
Sbjct: 2032 KTSNRAGPYSSYLL----------DIPKWFGDVFESMFGAVWLDCNQCLSEIWDIYKSKI 2081

Query: 1148 IMKSEIERLSVSVPK-----SPIREL--LELEPENARFSKPEKLADGRRVR-----VTVE 1195
            I    IE      P+     +P RE+   +   E    SKPEKL    ++R       +E
Sbjct: 2082 IPVMGIEGNRAYDPEFINTLNPRREIGKRKYRIEETTSSKPEKLNTKDKIREFLKKKKME 2141

Query: 1196 VFGKGSYKGIGRNYCIAKCT 1215
             F + S +  G  +C A+ +
Sbjct: 2142 EFTEDSLRFTGYYFCFAEIS 2161



 Score = 43.5 bits (101), Expect = 0.69,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 994  SYLLQAMTH--ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            S LL+A+T   A+ F N      +RLEF GD+ +    TR LYE     S G LT  R A
Sbjct: 1672 SLLLRALTQPTANDFFNL-----ERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGA 1726

Query: 1052 LVNNIIFASL 1061
             ++N  F  L
Sbjct: 1727 YISNANFLKL 1736


>gi|357118011|ref|XP_003560753.1| PREDICTED: ribonuclease 3-like protein 3-like [Brachypodium
            distachyon]
          Length = 296

 Score =  115 bits (288), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 124/249 (49%), Gaps = 24/249 (9%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLN--TLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            E  + Y F DKS + +A+TH SY+         Y+RLE+LGD +L  L++R ++   R+ 
Sbjct: 42   ETLLGYEFGDKSLVGEALTHGSYYYPYPPGDSTYERLEYLGDGVLTCLMSREVFLTYRSL 101

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
             PG LT LR+A V+    A +AV  G H F +H +P L   I  F+K        L +  
Sbjct: 102  PPGPLTRLRAANVDKEKLARVAVEHGIHRFLRHKAPQLDGQIDDFIK-------ELCKYK 154

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
            Y   G  D       PK L D+ ES+ GAIYLDS  + + VW+V+  +    I   ++  
Sbjct: 155  YHSNGLLD------APKVLSDIVESLIGAIYLDSNFNQEVVWRVFRNLADPLISLETLG- 207

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTV----EVFGKGSYKGIGRNYCIAKCTA 1216
             K P+ ELLE   +  R  +  K    + ++V V    E+ G  +Y    +   IA+  A
Sbjct: 208  -KHPVSELLEFCQKTRRGLQFVKDGWDKHLKVDVLVDGELLGTATY---AQKKEIAQNRA 263

Query: 1217 AKCALKHLK 1225
            AK AL  LK
Sbjct: 264  AKAALDKLK 272


>gi|158706452|sp|A2RAF3.2|DCL1_ASPNC RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1525

 Score =  115 bits (287), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 172/415 (41%), Gaps = 91/415 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1068 QIHVQRGMGRNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAA 1127

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
              K   + + +  F  R  W P G                       L L   K+ S + 
Sbjct: 1128 VDKEIYKYIRSRGFS-RHTWYPEG-----------------------LKLLQGKDHSRKA 1163

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              E                          ++H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1164 TTE--------------------------SKHALAEKTIADVCEALIGAALLSGGPDHRF 1197

Query: 950  LFMSWLGLKVIPPVTNPES---KHLSDVL------------LDGFD-----KFEESINYR 989
                 + +K +  + N  S   +   D +             DG +     K EE ++YR
Sbjct: 1198 D----MAVKAVTTLVNSPSHKAERWKDYISFYTIPKYQRRAADGAELYLSRKIEEKLSYR 1253

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            F+  + L  A TH SY        CYQRLEFLGD+++D +    L+       P  LT+ 
Sbjct: 1254 FRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEH 1313

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            + A+V+N    +LAV+LG H   K+ S  L   I ++            +E    EGE +
Sbjct: 1314 KMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYA-----------EEIQTAEGESE 1362

Query: 1109 EAEDI-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             A D      + PK L D+ E+  GA+++DS  + + + + + + +K   E +++
Sbjct: 1363 GAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAI 1417


>gi|317037196|ref|XP_001398755.2| dicer-like protein 1 [Aspergillus niger CBS 513.88]
          Length = 1493

 Score =  114 bits (286), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 108/415 (26%), Positives = 172/415 (41%), Gaps = 91/415 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1036 QIHVQRGMGRNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAA 1095

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
              K   + + +  F  R  W P G                       L L   K+ S + 
Sbjct: 1096 VDKEIYKYIRSRGFS-RHTWYPEG-----------------------LKLLQGKDHSRKA 1131

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              E                          ++H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1132 TTE--------------------------SKHALAEKTIADVCEALIGAALLSGGPDHRF 1165

Query: 950  LFMSWLGLKVIPPVTNPES---KHLSDVL------------LDGFD-----KFEESINYR 989
                 + +K +  + N  S   +   D +             DG +     K EE ++YR
Sbjct: 1166 D----MAVKAVTTLVNSPSHKAERWKDYISFYTIPKYQRRAADGAELYLSRKIEEKLSYR 1221

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            F+  + L  A TH SY        CYQRLEFLGD+++D +    L+       P  LT+ 
Sbjct: 1222 FRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEH 1281

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            + A+V+N    +LAV+LG H   K+ S  L   I ++            +E    EGE +
Sbjct: 1282 KMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYA-----------EEIQTAEGESE 1330

Query: 1109 EAEDI-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             A D      + PK L D+ E+  GA+++DS  + + + + + + +K   E +++
Sbjct: 1331 GAVDYWTVTKDPPKCLPDMVEAYVGAVFVDSDFNFEVIERFFRDYIKPFFEDMAI 1385


>gi|221361577|emb|CAX18337.1| dicel-like 2 [Nicotiana benthamiana]
          Length = 224

 Score =  114 bits (285), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 91/249 (36%), Positives = 119/249 (47%), Gaps = 53/249 (21%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-KQKVFGESMIATK 842
            LET+GDSFLKYA +I L+ TY N HEG L+  ++  +SN  L KLG  +K+ G      +
Sbjct: 24   LETLGDSFLKYAASIQLFKTYENHHEGLLTVKKNSIISNAALCKLGCARKIPG----FIR 79

Query: 843  FEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
             EP D   WL PG                                           +  +
Sbjct: 80   NEPFDLKGWLIPG----------------------------------------DNSQVYN 99

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
             D  V M   SV  Y+   Q +   K +AD VEALIGA+L   G   AL FM WLG+  I
Sbjct: 100  FDEEVLM--PSVKMYSRGRQKT-KSKRVADVVEALIGAFLSSGGEVAALSFMKWLGID-I 155

Query: 961  PPVTNPESKH--LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLE 1018
              V  P  +H  ++   L      E  ++Y+F D S L++A+TH SY L  +  CYQRLE
Sbjct: 156  DFVDAPSPRHFPMNAEKLVNVRYLESLLHYKFHDPSLLVEALTHGSYMLPEIPRCYQRLE 215

Query: 1019 FLGDAILDY 1027
            FLGD +LDY
Sbjct: 216  FLGDVVLDY 224


>gi|396465578|ref|XP_003837397.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
 gi|312213955|emb|CBX93957.1| similar to dicer-like protein 1 [Leptosphaeria maculans JN3]
          Length = 1588

 Score =  114 bits (284), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 121/499 (24%), Positives = 201/499 (40%), Gaps = 79/499 (15%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  GP+ +RLE +GD FLK A ++ ++   P  +E +    R   + N NL      
Sbjct: 1089 NFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPEENEFEYHVRRMLMLCNQNLM----- 1143

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E+ I  K   R +       +PKY+ T      F    W            PE  L
Sbjct: 1144 ----ETAIGVKKVARPDGTEINLELPKYVRTE----AFSRRTW-----------YPE-AL 1183

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            ++I+ K ++         +S   + L  +H++ DKS+AD  EA IGA  +E    G  + 
Sbjct: 1184 KLIRGKGIN---------KSEDDW-LKLRHNLGDKSVADVCEAFIGAAFMEHHKHGLWIP 1233

Query: 952  MSW-LGLKVIPPVTNPESKHL--------------------SDVLLDGFDKFEESINYRF 990
              W L +K +    N     +                    +  +LD   + E    Y F
Sbjct: 1234 SQWDLAVKAVKLFANNPDHSMEKWTDYYAAYVKPKYQLDQPTAAMLDAARQIEAVHPYHF 1293

Query: 991  KDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            K    +  A TH SY ++      YQRLEFLGD++LD     HLY       P  LT+ +
Sbjct: 1294 KYPRLVRSAFTHPSYAYMFEHIPNYQRLEFLGDSLLDMAFIMHLYYKYPDKDPQWLTEHK 1353

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE 1109
            + +V+N    ++ V+LG+H   K  +  L   I+ +V    E +   N       G  D 
Sbjct: 1354 TPMVSNKFLGAVCVKLGWHRHLKSNTAILSTQIRDYVLEIDEAEREAN-------GAVDY 1406

Query: 1110 AEDI-EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK--------SEIERLSVSV 1160
              ++ E PK L D+ E+   A+++DS      V   +   +K           E  + + 
Sbjct: 1407 WVNVHEPPKCLADVIEAYVAALFVDSQFDFSVVQSFFDRHLKPFFADMTLDAYENFASNH 1466

Query: 1161 PKSPIRELLELE------PENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKC 1214
            P + +  LL +          AR +       G+ +   V + GK  +  +G+    A+ 
Sbjct: 1467 PTTRLSRLLSISFGCSDWRMGARETDTVIPGKGKAIAAMVMIHGKVWFHSLGQGGRYARL 1526

Query: 1215 TAAKCALKHLKSAKPADVK 1233
             A+  AL+ L    P + +
Sbjct: 1527 RASHAALERLDGLPPYEFR 1545


>gi|258567596|ref|XP_002584542.1| predicted protein [Uncinocarpus reesii 1704]
 gi|237905988|gb|EEP80389.1| predicted protein [Uncinocarpus reesii 1704]
          Length = 1055

 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 122/504 (24%), Positives = 200/504 (39%), Gaps = 90/504 (17%)

Query: 681  LELIKNRIDVENTIKENQ---PVHIVRQSFDNASNPSKNTAILTEILENINKLNTYG-SV 736
            ++L +N +D + T KE Q      I  ++   ++ P+   A+       I++L +Y  ++
Sbjct: 598  IQLRRNLLD-KRTEKEKQNEGECFICLEALTVSAIPASVAALAFAFPAIISRLESYLIAL 656

Query: 737  EKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAI 796
            E   K +   P +     + +++    +     Q   +   G + +RLE +GD FLK A 
Sbjct: 657  EACQKLDLSIPAELALEALTKDSDNTEEHR-AMQVHFQRGMGKNYERLEFLGDCFLKMAT 715

Query: 797  TIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
            +I L+   P+  E      R   V N NLFK        E + +  F  R  W P G   
Sbjct: 716  SISLFTMNPDNDEYDFHVKRMCLVCNQNLFKAALNLKLYEFIRSQSFS-RRGWYPEG--- 771

Query: 857  PKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYN 916
                                              L +++ K                P N
Sbjct: 772  ----------------------------------LTLLQGK----------GQSKTAPEN 787

Query: 917  LVTQHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVI 960
               +H++ DK+IAD  EALIGA  +  G         R   +F++        W     +
Sbjct: 788  ---KHALADKTIADVCEALIGASYLSGGKSHRFDMAVRAVTVFVNSSDHNVSDWQDYSKL 844

Query: 961  PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEF 1019
              +   ++       +D   + +E + Y+FK    L  A TH+SY        CYQRLEF
Sbjct: 845  YALPRYQTAVSDPAEIDLVAQIKEKLGYQFKYPKLLRSAFTHSSYPSAWAAVPCYQRLEF 904

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGD++LD     HLY       P  LT+ + A+V+N     +AV+LG H   +H S  + 
Sbjct: 905  LGDSLLDMACVEHLYHRYPDKDPQWLTEHKMAMVSNKFLGCVAVKLGLHPHLRHFSAPIQ 964

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLDS 1134
              I  +V           +E    E E  ++ D      + PK L D+ E+  GAI++DS
Sbjct: 965  SQIATYV-----------EEIEAAELESGDSPDAWTSTSDPPKCLPDMVEAYIGAIFIDS 1013

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSV 1158
                + V   +   +K   E +++
Sbjct: 1014 DFRYEVVEDFFERFLKRYFEDMTI 1037



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 95/447 (21%), Positives = 178/447 (39%), Gaps = 85/447 (19%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP  SP+ R +TG     KL+A + AA E C +L +   LD+        F++ 
Sbjct: 293 FHCEVVLPEKSPV-RGLTGKPASKKLVAKQSAAFETCLLLRKHGLLDD-------HFVST 344

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
           Y      +P          S K  Q+      + + + R ++  P  L+AV   L     
Sbjct: 345 YHKR---LPAMRNARLAISSKKSNQYDMIVKPNLWQSSRGAI--PTTLHAVAFNL----- 394

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTR--------CGEVEVSIELIDK 211
              NK  R+ +        L ILT + +P+   FP++          C  +E SI++ D+
Sbjct: 395 -RPNKALRREY------HSLVILTREKLPEFPKFPLYLEDDIQCDVICTPIECSIQVSDE 447

Query: 212 NV-VLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP--------TVSDS 262
           ++ VL+   L    IF D +F K+         ++ N    +Y++ P        + + S
Sbjct: 448 DLEVLTTFTLR---IFQD-VFHKI---------YERNIPMMTYWLAPLNLLSDLASANVS 494

Query: 263 EQIVIDWKFMTLISEHHNDVIQDIPEKE---RENFVFDESKFRDAVVMPWYRNQFEPTYF 319
            + ++DW  +  + +   D+   I   +   + +FV+D    R            +P+  
Sbjct: 495 PRSILDWGILKAVFD-EPDISWSIGNSKKFAKNHFVYDRWDGRYRYFTLGVDPNLKPSDP 553

Query: 320 YVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPR 379
             A +    H  ++     + ++      S K  L+  +  QP++  +    R N L  R
Sbjct: 554 PPATVARRRHMGNIMDYCLSLFKN-----SRKKFLETCDWNQPVIRAELIQLRRNLLDKR 608

Query: 380 YVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNA 439
                      T +E + E       +  +  E   +   PAS+   + + P+I+ RL +
Sbjct: 609 -----------TEKEKQNE------GECFICLEALTVSAIPASVAALAFAFPAIISRLES 651

Query: 440 LLLADE----IRTAVASEIGLGKVILD 462
            L+A E    +  ++ +E+ L  +  D
Sbjct: 652 YLIALEACQKLDLSIPAELALEALTKD 678


>gi|392567716|gb|EIW60891.1| hypothetical protein TRAVEDRAFT_146565 [Trametes versicolor FP-101664
            SS1]
          Length = 1459

 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/252 (33%), Positives = 128/252 (50%), Gaps = 18/252 (7%)

Query: 924  PDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDG----- 978
            P KS+ DC+EAL+GA     G   AL   + LG+    P   P +     ++        
Sbjct: 1057 PRKSMQDCMEALLGASFATGGIDMALHAGTVLGVSFGGP--TPWNIRYGLLMPKSEPSPL 1114

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            F   +E++ YRF+    LL+A+TH S F +  +  YQRLEFLGDA++D ++T +LY+   
Sbjct: 1115 FLTLQEALGYRFEHGQLLLEAVTHPS-FGSADSSSYQRLEFLGDALIDMVVTEYLYKKFP 1173

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
              + G L+  RS  V     ASLAV RLG H      +  L   I R+V +  E    + 
Sbjct: 1174 EATSGQLSWARSRAVCGTALASLAVNRLGLHKLLLINNVELSIAIGRYVPILEE----IT 1229

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
             E  +++G   +      PKAL D+FESV GA+++D   + D    V   +M+  I  L 
Sbjct: 1230 NEEIILDGWKHDP-----PKALSDVFESVMGALFVDCDYNYDKAAAVIEMVMEDLIGALR 1284

Query: 1158 VSVPKSPIRELL 1169
              +P+ P+ +L+
Sbjct: 1285 PDLPRDPVSQLM 1296



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 32/51 (62%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
            +RLET+GD+ LK +  + LY  YP+ HEG+L  ++   V+N  L   G ++
Sbjct: 967  QRLETLGDAVLKLSAVVHLYNKYPHRHEGQLDAMKRVSVANRTLLARGVER 1017


>gi|63054443|ref|NP_588215.2| dicer [Schizosaccharomyces pombe 972h-]
 gi|1351642|sp|Q09884.1|DCR1_SCHPO RecName: Full=Protein Dicer; AltName: Full=Cell cycle control protein
            dcr1; AltName: Full=RNA interference pathway protein
            dcr1; Includes: RecName: Full=Endoribonuclease dcr1;
            Includes: RecName: Full=ATP-dependent helicase dcr1
 gi|157310516|emb|CAB41233.2| dicer [Schizosaccharomyces pombe]
          Length = 1374

 Score =  113 bits (283), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 109/401 (27%), Positives = 166/401 (41%), Gaps = 98/401 (24%)

Query: 759  TSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSK 818
            TS  S  +FD+             RLE  GD FLK   +I ++  +P+  E +L   R K
Sbjct: 919  TSAESQLNFDYD------------RLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKK 966

Query: 819  QVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLS 878
             +SN NL+K+       +  ++T  E R +W P G+                        
Sbjct: 967  IISNCNLYKVAIDCELPKYALSTPLEIR-HWCPYGF------------------------ 1001

Query: 879  LPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938
                             QK     C           Y ++ + S+  K IAD VEA IGA
Sbjct: 1002 -----------------QKSTSDKCR----------YAVLQKLSV--KRIADMVEASIGA 1032

Query: 939  YLIECGPRGALLFMSWLGLKVIPPVT----------NPESKHLSDVLLDGFDKFEESINY 988
             L++ G   AL     L + ++              N  +  L +V        EE+I Y
Sbjct: 1033 CLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGY 1092

Query: 989  RFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
             FK+K  L  A  H S      + + YQ+LEFLGDA+LDY+I ++LY+     + G LTD
Sbjct: 1093 SFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTD 1152

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGL-------HEVIQRFVKMQAENDFTLNQEY 1100
             +S  V N   + +   L  H + +H S  +        E+I+ F +  +EN       +
Sbjct: 1153 YKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASEN------PW 1206

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            +  E        I+ PK + D  E++  AI+LDSG SL ++
Sbjct: 1207 FWFE--------IDSPKFISDTLEAMICAIFLDSGFSLQSL 1239


>gi|226294068|gb|EEH49488.1| Dicer [Paracoccidioides brasiliensis Pb18]
          Length = 1423

 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 119/259 (45%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFM-----------SWLGLKVI 960
            +HS+ DKSIAD  EALIGA L+  G         +    F+           S++GL  +
Sbjct: 1065 KHSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSENHQVSDWQSYVGLYSL 1124

Query: 961  PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEF 1019
            P     E+    D  LD   +  + + YRFK    L  A THASY    +   CYQRLEF
Sbjct: 1125 PRYQIAEA---DDTQLDLAQQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEF 1181

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGD++LD +   HLY       P  LT+ + A+V+N    ++AV+LG H    + S  L 
Sbjct: 1182 LGDSLLDMVCVEHLYHKYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALL 1241

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
              I R+ +     +              D       PK L D+ E+  GAI++DS  S +
Sbjct: 1242 GQITRYAEEIEATETESIDSPDFWTTTSDP------PKCLPDMLEAYIGAIFVDSNFSFE 1295

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + +K   E +S+
Sbjct: 1296 VVEDFFQQCLKKYFEDMSI 1314



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 104/425 (24%), Positives = 167/425 (39%), Gaps = 80/425 (18%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP  SP+ R +TG     KL A + AA E C +L +   LD+  +    + + L
Sbjct: 572 FVCEVVLPEKSPV-RGLTGRPAVAKLSAKQSAAFETCLMLRKNGLLDDYFLSKYHKRLPL 630

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N +  + K+ +   Y    K + +   R             TP  ++A  + L     
Sbjct: 631 MRNAKLAI-KSKKTNQYDMMVKPKLWEKSRGM-----------TPYEVHATVLTL----- 673

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
              + + R++H P      L +LT + +PK   FP++      C  V + +      V  
Sbjct: 674 -RPSAKLRRVHQP------LVLLTRESLPKFPVFPLYLETDIECDVVSIPLR-ASMQVSQ 725

Query: 216 SEENLSNTL---IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
           SE +L  T    IF D LF KV   +  +M +        Y  V   S+  Q+ IDWK +
Sbjct: 726 SELDLFTTFTLRIFQD-LFHKVYDHQPAMMPYWLAPISLEYGNVLEDSNLRQL-IDWKII 783

Query: 273 TLISEHHNDV-IQDIPEKEREN-FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
             + E+       D+P    EN F+FD+   R       YR       ++ +E+  N+ P
Sbjct: 784 QHVQENPEICWTSDMPRSSLENIFMFDKWDDR-------YR-------YFTSELELNIRP 829

Query: 331 ----------RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
                     R    S  N   +  +   LK+ L   +  QP++  +    R N L  R 
Sbjct: 830 SDPPPPTMAKRRYMDSIMNYCISLYKKSRLKF-LGTCDWNQPVVRAELVRLRRNLLD-RT 887

Query: 381 VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNAL 440
              KG       EET   I           PE   I   PA +   + + P+++ R+ + 
Sbjct: 888 TEHKG-------EETSYYI----------CPEPLRISALPAPVAVFAFTFPAMISRIESY 930

Query: 441 LLADE 445
           L+A E
Sbjct: 931 LIALE 935


>gi|353227266|emb|CCA77779.1| hypothetical protein PIIN_03414 [Piriformospora indica DSM 11827]
          Length = 1418

 Score =  113 bits (282), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 76/251 (30%), Positives = 120/251 (47%), Gaps = 15/251 (5%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL---KVIPPVTNPESKHLSDVLLDGF 979
            IP +S+ DC+EAL+G   +  G +  L   + LGL     +P         L+      F
Sbjct: 1033 IPRRSVQDCMEALLGVAWLSGGDKAGLRVGTRLGLCFGGTVPWAERYPKVELAFSSSSPF 1092

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
               EE++ Y FKDKS L++A+TH S+   + +  YQRLEFLGDA+LD +   H +     
Sbjct: 1093 PPLEENLGYTFKDKSLLVEALTHPSFVSGSAS--YQRLEFLGDAVLDLVTVEHFFHLYPN 1150

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
             + G LT  R+  V N   ++L  + L  H      +  L     +  +M    DFT   
Sbjct: 1151 ATSGKLTRARARCVCNSTLSALGTKKLEIHKAMFCDAISLVAAANKTARMFNSMDFT--- 1207

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                     D    ++ PKALGD+ E++ GA+++DSG + + V  V   + K  ++ +  
Sbjct: 1208 ------QVIDNIWRLDAPKALGDMVEALIGAVFVDSGWNYNIVKDVVIRLFKEVLDYIHP 1261

Query: 1159 SVPKSPIRELL 1169
             +P  P  E +
Sbjct: 1262 DMPLDPTSEFM 1272



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 24/51 (47%), Positives = 32/51 (62%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
           +RLET+GDSFLK A TI +   +P+ HEG+L+ LR   V N  L   G  +
Sbjct: 947 QRLETLGDSFLKVATTIHVLNKFPHKHEGQLTSLRQNSVCNRYLLGRGHAQ 997



 Score = 43.5 bits (101), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 31/97 (31%), Positives = 48/97 (49%), Gaps = 9/97 (9%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRS----VTG 58
            +I ++N  C+ +P D  TR     ++  + E D + F  + RLP   P+ R     V+ 
Sbjct: 542 GSISLLNNLCSLIPRDDHTR-----SLQPVYETDPVTFRTTNRLPPALPIPREDLLFVSD 596

Query: 59  HKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
               TK  A R AA +A   LYEL   D+ L+P+ +E
Sbjct: 597 PFCRTKKAAKRNAAFKAVLRLYELGVFDDFLLPIRRE 633


>gi|225684422|gb|EEH22706.1| dicer [Paracoccidioides brasiliensis Pb03]
          Length = 1469

 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/259 (31%), Positives = 119/259 (45%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFM-----------SWLGLKVI 960
            +HS+ DKSIAD  EALIGA L+  G         +    F+           S++GL  +
Sbjct: 1126 KHSLADKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSGNHQVSDWQSYVGLYSL 1185

Query: 961  PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEF 1019
            P     E+    D  LD   +  + + YRFK    L  A THASY    +   CYQRLEF
Sbjct: 1186 PRYQIAEA---DDTQLDLAQQIGDRLGYRFKYPRLLSSAFTHASYPTGWSKVPCYQRLEF 1242

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGD++LD +   HLY       P  LT+ + A+V+N    ++AV+LG H    + S  L 
Sbjct: 1243 LGDSLLDMVCVEHLYHKYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLLYFSKALL 1302

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
              I R+ +     +              D       PK L D+ E+  GAI++DS  S +
Sbjct: 1303 GQITRYAEEIEATETESIDSPDFWTTTSDP------PKCLPDMLEAYIGAIFVDSNFSFE 1356

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + +K   E +S+
Sbjct: 1357 VVEDFFQQCLKKYFEDMSI 1375



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 103/425 (24%), Positives = 168/425 (39%), Gaps = 80/425 (18%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP  SP+ R +TG     KL A + AA E C +L +   LD+  +    + + L
Sbjct: 633 FVCEVVLPEKSPV-RGLTGRPAVAKLSAKQSAAFETCLMLRKNGLLDDYFLSKYHKRLPL 691

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N +  + K+ +   Y    K + +   R             TP  ++A  + L     
Sbjct: 692 MRNAKLAI-KSKKTNQYDMMVKPKLWEKSRGM-----------TPYEVHATVLTL----- 734

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
              + + R++H P      L +LT + +PK   FP++      C  V + +      V  
Sbjct: 735 -RPSAKLRRVHQP------LVLLTRESLPKFPVFPLYLETDIECDVVSIPLR-ASMQVSQ 786

Query: 216 SEENLSNTL---IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
           SE +L  T    IF D LF KV   +  +M +        Y  V   S+  Q+ IDWK +
Sbjct: 787 SELDLFTTFTLRIFQD-LFHKVYDHQPAMMPYWLAPISLEYGNVLEDSNLRQL-IDWKII 844

Query: 273 TLISEHHNDV-IQDIPEKEREN-FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
             + E+       D+P    EN F+FD+   R       YR       ++ +E+  N+ P
Sbjct: 845 QHVQENPEICWTSDMPRSSLENIFMFDKWDGR-------YR-------YFTSELELNLRP 890

Query: 331 ----------RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRY 380
                     R    +  N   +  +   LK+ L+  +  QP++  +    R N L  R 
Sbjct: 891 SDPPPPTMAKRRYMDNIMNYCISLYKNSRLKF-LETCDWNQPVVRAELVRLRRNLLD-RT 948

Query: 381 VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNAL 440
              KG       EET   I           PE   I   PA +   + + P+++ R+ + 
Sbjct: 949 TEHKG-------EETAYYI----------CPEPLRISALPAPVAVFAFTFPAMISRIESY 991

Query: 441 LLADE 445
           L+A E
Sbjct: 992 LIALE 996


>gi|256077012|ref|XP_002574802.1| ribonuclease III [Schistosoma mansoni]
          Length = 907

 Score =  112 bits (281), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 164/393 (41%), Gaps = 74/393 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYP-NVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +RLE  GDSFL +  T+ +Y T P +  EG LS  R   VSN +L  +     + E    
Sbjct: 548  ERLEFYGDSFLHFIATLCVYGTNPQDADEGCLSSKRGSLVSNAHLCDIACDLKWYEYCTG 607

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
              F P      P +F+P     A     +   L+  L+                      
Sbjct: 608  QTFSP------PEHFLPPCYSVASEACKYDPRLYTRLT---------------------- 639

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
                                    DKS+AD VEALIG +L+  G   A   + +   ++ 
Sbjct: 640  ------------------------DKSLADMVEALIGCFLLRSGLSAAFNLLHYF--QIC 673

Query: 961  PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL 1020
            P +    ++         F + +E + Y FK    L +AMTH S         YQRLEFL
Sbjct: 674  PEIILELNQR--------FFQLQEKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFL 725

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD+IL ++I+ +L++     SPG LT  RS +V+NI  A++ V    + F    +  L  
Sbjct: 726  GDSILGHIISNYLFQKCPNSSPGALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKA 785

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG----M 1136
             I     +  + D    +   L+  +     +++V   L D+FES+ GAI++DS     +
Sbjct: 786  CIDDIKSIHRQTDSHF-ERIELITKKVSSGLNVKV---LADVFESILGAIFVDSNGNHQV 841

Query: 1137 SLDTVWKVYYEIMKSEIERL---SVSVPKSPIR 1166
            +   + +   + M S I  L    VS+P   IR
Sbjct: 842  ASSIIHRFLGKTMNSVITNLLVQPVSLPYPDIR 874



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 343 TFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL-TPRYVNRKGINLATTSEETRREIRE 401
           T+ +YY +KY    Q ++     +D +      L   R+ N   +N         R+ + 
Sbjct: 347 TYSDYYRIKY----QQMKTISFTIDPSLPLFECLRITRHQNSTQVNAGL------RKNKA 396

Query: 402 SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           S+ K  L + + CL+HP  + +W +   +P+ILY+++  LLA ++ T +  E+
Sbjct: 397 SI-KPSLFLSDACLVHPLSSWIWFQVSLVPTILYQMSRALLASQLFTELNYEL 448


>gi|358332040|dbj|GAA50766.1| dicer-like protein 1 [Clonorchis sinensis]
          Length = 774

 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 127/258 (49%), Gaps = 35/258 (13%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPV------------------- 963
            + DKS+AD +EAL+G +L   G RGA   +   G+  +  +                   
Sbjct: 486  LTDKSLADMIEALLGCFLQCIGIRGACGLLQRFGISFMDCINDTFNSSASMWRCFFQDAV 545

Query: 964  --TNPESK---------HLSDVLLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
              TN  SK           +   LD G    +  + Y FK+++ L +A TH+SY     T
Sbjct: 546  CLTNQLSKLTIGSARGDEATKAELDAGISILQGRLGYVFKNQALLHEARTHSSYSSLKPT 605

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
             CYQRLEFLGDA+L Y+++  L++    + PG LT+ RS +VNN++ A + V L  H   
Sbjct: 606  VCYQRLEFLGDAVLGYVVSNDLFKRFPDYDPGMLTNHRSLIVNNLVLARVLVDLKLHDGI 665

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            +H  P L  ++ +   ++  +  +L++    ++     +      K LGD+FES+ GA++
Sbjct: 666  RHNIPSLPSMVDKLRSVRLADVTSLSELREKIQTNITASP----MKILGDVFESLIGAVF 721

Query: 1132 LDSGMSLDTVWKVYYEIM 1149
            +D+   L  +  + + ++
Sbjct: 722  VDTNGDLQVIQTIVHRLL 739


>gi|395331143|gb|EJF63525.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Dichomitus squalens LYAD-421 SS1]
          Length = 1526

 Score =  112 bits (280), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 116/408 (28%), Positives = 174/408 (42%), Gaps = 85/408 (20%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LK+  +  LY  +P  HEG LS  +   V+N NL +   +K     +I  
Sbjct: 1036 QRLETLGDTVLKFITSNLLYADFPLWHEGYLSRKKDHAVANVNLARWAVKKGLYRWIIRD 1095

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEA---GFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
            +F PR  W P         +  L +    G P +        N KE          K K 
Sbjct: 1096 RFIPR-KWKPHYSSAAGAFDEILDDRSREGTPTASDAAAQNGNSKESR--------KGKA 1146

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL-------LF 951
             DL                        K +AD VE+LIGA   + G   A+       L 
Sbjct: 1147 EDLST----------------------KMLADVVESLIGAAYEDGGFDRAIDCVTAFNLG 1184

Query: 952  MSWLGLKVIPPVTNPESKHLSDVLLDGFDKF---EESINYRFKDKSYLLQAMTHASYFLN 1008
            +SW   K +P      + H  D + D  ++    E+ INYRF  +++L+QA+THASY  +
Sbjct: 1185 LSW---KKLPEYIG--AMHAVDDIDDIPEQLALVEQMINYRFARRTFLVQALTHASYQGD 1239

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDE-RAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
              T   +RLEFLGDA LD ++  +LY  E + +SPG +   + A+VN+ I A   ++   
Sbjct: 1240 FATMSLERLEFLGDAALDMIVVDYLYHAEGKDYSPGYMHIKKMAVVNSHILAYTCLKTAV 1299

Query: 1068 H-----------------------HFFKHLSPGLHEVIQ-------RFVKMQAE-NDFTL 1096
                                    + ++ L    H V++       R+ K  AE  D   
Sbjct: 1300 TVESTMPTWSPEHGLEAVDDSQQVYLWQCLLHSSHRVLEDQNLTFLRYQKHGAEIADALE 1359

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            N   Y   G       ++ PK + D+ ES+ GA+Y+DS   L  V +V
Sbjct: 1360 NDAVYPWAGLT----SLQAPKFISDMVESILGAVYVDSFGDLGKVRQV 1403


>gi|321451362|gb|EFX63042.1| hypothetical protein DAPPUDRAFT_336024 [Daphnia pulex]
          Length = 270

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 70/193 (36%), Positives = 110/193 (56%), Gaps = 7/193 (3%)

Query: 960  IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEF 1019
            +PP  + +SK L+   L     FEE +NY F DK  LL+A+T+ +  + +L   YQRLE 
Sbjct: 82   VPP-KSKKSKPLTCNQLSAVKAFEEILNYSFNDKEVLLEALTYGNS-IRSLN--YQRLEV 137

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            +GDA   +L   + ++    HS G ++ LRSA V N  F  LA +  FH + ++L P L 
Sbjct: 138  IGDAAFGFLAALNFFKQSLYHSAGDISQLRSACVCNDTFGMLAAKRNFHAYIQNLPPNLV 197

Query: 1080 EVIQRFVKM-QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            + ++ F++  ++EN    ++E  L E E   A  + +P  L D+FE+VAGA+  DS +S 
Sbjct: 198  KHLEDFLEFAESENFAPFDRE--LAENEEIIATQVAIPTFLADVFEAVAGAVITDSNLSF 255

Query: 1139 DTVWKVYYEIMKS 1151
            +T+ KV+   M S
Sbjct: 256  ETLEKVFVPFMNS 268


>gi|225460893|ref|XP_002278706.1| PREDICTED: ribonuclease 3-like protein 2-like [Vitis vinifera]
          Length = 364

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/245 (30%), Positives = 125/245 (51%), Gaps = 16/245 (6%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E  INY+F++K  L +A+TH+SY   T +  YQRLEF+GDA L   ++ +++    +  P
Sbjct: 36   ERIINYKFRNKKLLEEALTHSSY---TDSASYQRLEFIGDAALGCALSNYVFLAYPSLDP 92

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF-VKMQAENDFTLNQEYY 1101
            G L+ +R+A ++    A +AVR+G + + +H +  L + ++ F + +Q E D  L     
Sbjct: 93   GQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLY---- 148

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
                       ++ PK L D+ ESVA AIY+D    L  +W ++  +++  +   ++   
Sbjct: 149  --------GGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEALQQQ 200

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCAL 1221
              P+  L EL  ++ +    +    G +   +V V GK    G      IAK  AAK AL
Sbjct: 201  PQPVTLLYELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAKEAL 260

Query: 1222 KHLKS 1226
            + L S
Sbjct: 261  QKLSS 265


>gi|119174400|ref|XP_001239561.1| hypothetical protein CIMG_09182 [Coccidioides immitis RS]
          Length = 1357

 Score =  112 bits (279), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 148/343 (43%), Gaps = 44/343 (12%)

Query: 920  QHSIPDKSIADCVEALIGA----------YLIECGPRGALL------FMSWLGLKVIPPV 963
            +H++ DK+IAD  EALIGA          + I      AL+       ++W     +  +
Sbjct: 1005 KHALADKTIADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWEQYSRLYSI 1064

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGD 1022
               ++  +    LD   + ++ + Y FK    L  A TH SY        CYQRLEFLGD
Sbjct: 1065 PKYQTAVVDAAELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGD 1124

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            A+LD     H+Y       P  LT+ + A+V+N    S+AVRLG H    H S  L   I
Sbjct: 1125 ALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQI 1184

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLDSGMS 1137
              +V           +E    E E  +  D      + PK L D+ E+  GAI++DSG S
Sbjct: 1185 TNYV-----------EEIEAAELESGDPPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFS 1233

Query: 1138 LDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF-----SKPEKLAD 1186
             + V + + + +K   E +++        P + +   L ++   + +       P     
Sbjct: 1234 FEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGP 1293

Query: 1187 GRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G RV   V V  +   +G+  +   AK  A++ AL  L+   P
Sbjct: 1294 GTRVLAAVIVHDEVVAEGVASSSRYAKLKASEAALSKLEGLPP 1336


>gi|393215463|gb|EJD00954.1| ribonuclease III [Fomitiporia mediterranea MF3/22]
          Length = 1411

 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 113/224 (50%), Gaps = 13/224 (5%)

Query: 925  DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN----------PESKHLSDV 974
            DK++AD  EA+IGA  +  G   AL     L + V P +            P  +  + +
Sbjct: 1051 DKAVADVAEAIIGAAYVTGGREIALKVTKALNVPV-PHIDRWSDFGRKALAPPPEVTARL 1109

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
                    E  I ++F     L QA+THAS   N +T  Y+RLEF+GDAILD+L+ RH+Y
Sbjct: 1110 RTGSIQAVEAIIGHQFNHPHLLAQALTHASIHGNEMT-SYERLEFIGDAILDFLVIRHIY 1168

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            + + + SPG LT L+ A+V+N   A++ V  G H      S  L + IQ +     +   
Sbjct: 1169 DRDSSLSPGALTLLKGAMVSNAALAAVCVWSGLHEHLLFESSALEKSIQSYAVELEQRQL 1228

Query: 1095 TLNQEYYLMEGECDEA-EDIEVPKALGDLFESVAGAIYLDSGMS 1137
              +++    + +  +   D+E PKAL D+ ES+ GA+Y+    S
Sbjct: 1229 AEHEQAAREDRQPGQYWVDVEPPKALSDVVESIFGAVYVSDNFS 1272



 Score = 67.4 bits (163), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 109/481 (22%), Positives = 198/481 (41%), Gaps = 69/481 (14%)

Query: 1   MDNAIFIVNRYCARLPS--DIFTRL-APIITISEIKEDDS--IMFTCSIRLPINSPLKRS 55
           + +A+ +V R+ ++LP+  D+  RL  P+    E+++  S   M+ C++ LP  +PL+R 
Sbjct: 392 VQDAMTVVYRFASQLPAAGDVERRLNKPLFEYEELQDGPSSKTMYICTVLLPPGAPLRR- 450

Query: 56  VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDL-----MPVTKEFINLYENTEPVVPKT 110
           V+G   P++  A R+A  + C  LY L  LD  L     +P T+     Y + + +   +
Sbjct: 451 VSGSPSPSRSQARRMACYQTCYELYSLGALDYRLFPRPPLPATRPQRTTYISAQMIEEMS 510

Query: 111 PEIETYPDSTKRRQFYHKRMAS-CFTNCRPS--VNT-PCYLYAVKMKLTCPIPDEQNKRG 166
              E       R Q  ++ M +  +   RP   +NT P     +   +  P+ D      
Sbjct: 511 DREEEEALLPSRLQEQNRAMGTRLYPRKRPDFWMNTLPIMRGCLYPTIIYPVVDPNAIEV 570

Query: 167 RKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIF 226
             +H P      + ILT   +P +  F I+     V   +          ++++   L  
Sbjct: 571 GGVHSP------ILILTRLPLPPLFPFKIYY--SGVAGKVHFKRGEAFEVDDDMLQDLYK 622

Query: 227 MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVID--------WKFMTLISEH 278
                 + +  K Y+   D       YF+ P   D +  V +        W F  ++   
Sbjct: 623 YTIRMIRSITNKPYICALD----SIPYFLAPLYRDFKIDVGEGGPDDGQRWDFPNVVDHI 678

Query: 279 HNDVIQ--------DIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
             D +Q         +  ++    + D     DA++   +  +F   Y Y   +  +++P
Sbjct: 679 PWDKVQLAAAKAAAALNTQDVHTLIADSE---DALIQDRW-AEFTRKY-YCVRMRPDLNP 733

Query: 331 RS--MFPSRTNTYQTFEEY-YSLKYGLQ-IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGI 386
            S      R   +    EY  + + G + +Q+ +QPL++V+  S  ++ L P        
Sbjct: 734 LSKPQDSPREKDFDNLVEYCRARRRGFEGLQDYKQPLIEVEVCSSLVSHLNP-------- 785

Query: 387 NLATTSEETRREIRESLGK-KQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
                   T R+I ES     + L+PELC+    PAS++R    LPSI+ +L   LL  E
Sbjct: 786 --------TARQIAESKHHPAKYLIPELCVKSTIPASVYRTISLLPSIISKLEDFLLIKE 837

Query: 446 I 446
           +
Sbjct: 838 L 838



 Score = 56.6 bits (135), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 25/75 (33%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD++LKY  +++L+ T+P +HEG L   R + +SN +L +   +    + + + 
Sbjct: 868 ERLELLGDAYLKYLSSVYLFVTFPTLHEGALHVSRQRIISNRSLLRNANRCGLPQYIQSK 927

Query: 842 KFEPRDNWLPPGYFV 856
              PR  W PP + V
Sbjct: 928 PLAPR-MWCPPNFIV 941


>gi|390598592|gb|EIN07990.1| hypothetical protein PUNSTDRAFT_144457 [Punctularia strigosozonata
            HHB-11173 SS5]
          Length = 1435

 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 176/400 (44%), Gaps = 67/400 (16%)

Query: 776  HTGP--SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKV 833
            HTG   S +RLET+GDS LK  + + L   +   HEG+L  LR   V+N  L  L +   
Sbjct: 968  HTGAGFSNQRLETLGDSVLKLCVIVHLLNRFRRRHEGQLDALRRNAVANRTL--LARAHA 1025

Query: 834  FGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
             G                    +  YL                +S+   + + PE     
Sbjct: 1026 IG--------------------LGSYLTC------------ETMSVRTWRHVVPE----- 1048

Query: 894  IKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
              ++    D T    V            SIP + + DC+EA +GA  +  G   AL   +
Sbjct: 1049 --EQHTPFDTTSARFVA----------RSIPRRCLQDCMEATLGAAFLGGGIPMALQAGT 1096

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
             LG+ +  PV        K +       F + +E+++Y F +   L++A TH S+   T 
Sbjct: 1097 VLGMSLGGPVPWNLRYGRKPIGKTPAALFHRVQEALHYDFHNGDLLIEASTHPSFESGTF 1156

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHH 1069
               YQRLEFLGDA++D ++ ++LY      +PG L+  RS  V +   A +AV +L  + 
Sbjct: 1157 -GSYQRLEFLGDALIDLVVMQYLYRKFPEGTPGQLSWARSRAVCSQTMAWVAVTQLELNK 1215

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
                 +  L+  + +++ +    DF+        E    ++  ++ PKAL D+ ES+ GA
Sbjct: 1216 IMLVNNSELNIALAKYIPIL--EDFS-------AEDIIAKSWKLDPPKALSDVLESIMGA 1266

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            + LD+    +    V   +M+  ++ L++ +P  PI +L+
Sbjct: 1267 VLLDTAYDYERSEAVVEWVMRDVLDALTLDLPPDPISQLM 1306


>gi|442570277|sp|Q1DKI1.3|DCL1_COCIM RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
 gi|392869759|gb|EJB11896.1| dicer-like protein 1 [Coccidioides immitis RS]
          Length = 1500

 Score =  111 bits (278), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 148/343 (43%), Gaps = 44/343 (12%)

Query: 920  QHSIPDKSIADCVEALIGA----------YLIECGPRGALL------FMSWLGLKVIPPV 963
            +H++ DK+IAD  EALIGA          + I      AL+       ++W     +  +
Sbjct: 1148 KHALADKTIADVCEALIGACCLLASKNHRFDIAVKAVTALVSSDDHNVLNWEQYSRLYSI 1207

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGD 1022
               ++  +    LD   + ++ + Y FK    L  A TH SY        CYQRLEFLGD
Sbjct: 1208 PKYQTAVVDAAELDLAAQVKKKLGYDFKYPKLLRSAFTHPSYPSAWARVPCYQRLEFLGD 1267

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            A+LD     H+Y       P  LT+ + A+V+N    S+AVRLG H    H S  L   I
Sbjct: 1268 ALLDMACVEHIYHKHPDKDPQWLTEHKMAMVSNKFLGSVAVRLGLHSHLNHFSTSLQSQI 1327

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLDSGMS 1137
              +V           +E    E E  +  D      + PK L D+ E+  GAI++DSG S
Sbjct: 1328 TNYV-----------EEIEAAELESGDPPDAWTLTSDPPKCLPDMVEAYIGAIFIDSGFS 1376

Query: 1138 LDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF-----SKPEKLAD 1186
             + V + + + +K   E +++        P + +   L ++   + +       P     
Sbjct: 1377 FEVVEEFFQKFLKKHFEDMTIYDTYANKHPTTYLHNRLAIDFGCSNYCLKAGEVPYVDGP 1436

Query: 1187 GRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
            G RV   V V  +   +G+  +   AK  A++ AL  L+   P
Sbjct: 1437 GTRVLAAVIVHDEVVAEGVASSSRYAKLKASEAALSKLEGLPP 1479


>gi|196123912|gb|ACG70195.1| Dicer-1 [Dermacentor variabilis]
          Length = 138

 Score =  111 bits (278), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 49/74 (66%), Positives = 59/74 (79%)

Query: 348 YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQ 407
           Y  KY +++ +  QPLLDVDHTS RLN LTPRYVNRKG+ L T+SE+T+R  RE L +KQ
Sbjct: 1   YREKYQIRVVDGRQPLLDVDHTSARLNLLTPRYVNRKGVTLPTSSEQTKRAKREGLQQKQ 60

Query: 408 LLVPELCLIHPFPA 421
           +LVPELC IHPFPA
Sbjct: 61  ILVPELCAIHPFPA 74


>gi|409080003|gb|EKM80364.1| hypothetical protein AGABI1DRAFT_128037 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1365

 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 109/407 (26%), Positives = 178/407 (43%), Gaps = 61/407 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA- 840
            +RLE +GD+ LKY  T +++    N  EG+L   R + +SN  L  +    V G  +   
Sbjct: 992  ERLELLGDALLKYLSTTYVFVQNLNGTEGELHTARQRFISNRQLCDI----VSGWGLPGY 1047

Query: 841  TKFEPRD--NWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
             + +P +  +WLPPG  +    + + +  G            N++   P +         
Sbjct: 1048 IQLKPFNIKSWLPPGMIIDDRQKESTVGGGVMDD-----GHLNMRPAQPNE--------- 1093

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK 958
             D               N  T   I +K++AD  EA+IGA  I  G   AL     L + 
Sbjct: 1094 -DRIGASKRPKNKKRRLNKKTSSPIANKTVADVAEAIIGAAYISGGRDSALKATKALMI- 1151

Query: 959  VIPPVTNPE-----SKHLSDVLLDGFDKFEESI--------NYRFKDKSYLLQAMTHASY 1005
               P T+ E      +  S   LD     E S+         +RF+  S L   +T  S 
Sbjct: 1152 ---PFTDVEEWADFGRKASAPRLDTGHAPEPSVMHFIETITGFRFQQPSLLRLTLTQNSM 1208

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
             +      +QRLEFLGDA+LD+L+ R+LY+ +   SPG L+ ++S +V+N I A++ V  
Sbjct: 1209 EMKD----HQRLEFLGDAVLDFLVVRYLYDKDEHASPGELSVMKSLMVSNSILAAICVWS 1264

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKM-----QAENDFTLNQE----YYLMEGECDEAEDIEVP 1116
            G H F  H+     +V+  + K       AE   T  +     Y+ M        D++VP
Sbjct: 1265 GLHRFV-HVRQQQKQVVWDYEKALRGREAAETSSTSKEAARVTYFWM--------DLDVP 1315

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
            K L D+ ES+ GA Y+    S   V  ++ +++    ++   + P++
Sbjct: 1316 KVLSDVIESIIGAAYISDDFSQAGVEVIFDKMLLPFYQKFVFTKPEA 1362


>gi|297737474|emb|CBI26675.3| unnamed protein product [Vitis vinifera]
          Length = 337

 Score =  111 bits (277), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 126/248 (50%), Gaps = 16/248 (6%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            +  E  INY+F++K  L +A+TH+SY   T +  YQRLEF+GDA L   ++ +++    +
Sbjct: 6    EAVERIINYKFRNKKLLEEALTHSSY---TDSASYQRLEFIGDAALGCALSNYVFLAYPS 62

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF-VKMQAENDFTLNQ 1098
              PG L+ +R+A ++    A +AVR+G + + +H +  L + ++ F + +Q E D  L  
Sbjct: 63   LDPGQLSLIRAANISTEKLARVAVRVGLYQYVRHNAAALDDKVREFALAVQEEGDSVLY- 121

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                          ++ PK L D+ ESVA AIY+D    L  +W ++  +++  +   ++
Sbjct: 122  -----------GGSVKAPKFLADIVESVAAAIYVDCNFDLQVLWVIFRGLLEPIVTHEAL 170

Query: 1159 SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAK 1218
                 P+  L EL  ++ +    +    G +   +V V GK    G      IAK  AAK
Sbjct: 171  QQQPQPVTLLYELCQKDGKHVDIKHWRKGSKNIASVYVGGKFIASGSSDEKEIAKLNAAK 230

Query: 1219 CALKHLKS 1226
             AL+ L S
Sbjct: 231  EALQKLSS 238


>gi|317150438|ref|XP_001824024.2| dicer-like protein 1 [Aspergillus oryzae RIB40]
 gi|158706453|sp|Q2U6C4.2|DCL1_ASPOR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1523

 Score =  110 bits (276), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 110/412 (26%), Positives = 169/412 (41%), Gaps = 85/412 (20%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1066 QIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTA 1125

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   +   +  F  R  W                   +P  L       + K++S E 
Sbjct: 1126 LKKELYQYTRSRGFS-RHTW-------------------YPDGLTLLHGRDHRKKISAE- 1164

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
                                         ++H++ +K++AD  EALIGA L+     G L
Sbjct: 1165 -----------------------------SKHALREKTVADVCEALIGASLLS----GGL 1191

Query: 950  LFMSWLGLKVIPPVTN-PESKHL------SDVLL--------DGFD-----KFEESINYR 989
                 + +K +  V + P  K L      S  +L        DG++     K EE + YR
Sbjct: 1192 HNQFDMAVKAVTAVVDSPNHKALCWADYTSSYMLPKYQTQSPDGYELDLGRKVEEKLGYR 1251

Query: 990  FKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            FK    L  A TH SY        CYQRLEFLGD++LD +    L+       P  LT+ 
Sbjct: 1252 FKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKDPQWLTEH 1311

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYYLMEGE 1106
            + A+V+N    +LAV+LG H   +H S  L   I  + +    AEN+     +Y+L+   
Sbjct: 1312 KMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAVDYWLVTK- 1370

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                   + PK L D+ E+  GA ++DS      V   +   +KS    +++
Sbjct: 1371 -------DPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTI 1415



 Score = 45.4 bits (106), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 107/467 (22%), Positives = 173/467 (37%), Gaps = 95/467 (20%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +A+ I+ RY + L  +  T       +  + +++S  F C + LP  SP+ R +TG    
Sbjct: 639  SALAILARYASSLQYEKETSAQATYVV--LPQNNS--FVCEVILPEKSPV-RGLTGVPAS 693

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K  A + AA + C +L + K LD+    V    +    N    +  T       D   +
Sbjct: 694  KKSAAKQSAAFDTCVLLRKHKLLDDHFNSVYHRRLPAMRNARLAI--TSSRTNQYDMLSK 751

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
               + K+  +           P  L+A  +     IP E  +R  +          + +L
Sbjct: 752  PSLWGKQQGTL----------PEKLFATVISF---IPSEPLRRRHR---------SIILL 789

Query: 183  TTKYIPKVCSFPIFTRCG-EVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
            T + +P   SF IF     E  V  E +++ + +S + L     F   +F  V     + 
Sbjct: 790  TRERLPDFPSFTIFLDDDIETIVVTESVEEALHISSQELEYLSTFTFRIFHDV-----FH 844

Query: 242  MLFDPNCSENSYFIVPT-------VSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERE-- 292
              +     +  Y++ P        VSDS+ +  DW+ + L+  H N+ I        E  
Sbjct: 845  KTYAEEPEKLPYWVAPAETKKSKNVSDSKSLT-DWELLHLV--HENEEIPSTLHPSSEAL 901

Query: 293  --NFVFDESKFRDAVVMPW---YRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY 347
               FVFD          PW   YR      YF +A I   +HP    PS     +  E  
Sbjct: 902  INRFVFD----------PWDGRYR------YFTMA-IDNTLHPSDPPPSFLPRRKFMESI 944

Query: 348  YSLKYG---------LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398
             S             L   N +QP+L+V+    R N L       K +       ETR  
Sbjct: 945  MSYTLSGSKNARAGFLSRCNWQQPVLEVELVRLRRNLLDKMTDTEKDV-------ETR-- 995

Query: 399  IRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
                      +  E   I   P  +    ++ P+I+ RL+A L+A E
Sbjct: 996  --------CFVCIEPLRISAIPEEIAASCLAFPAIINRLDAYLIALE 1034


>gi|402225633|gb|EJU05694.1| hypothetical protein DACRYDRAFT_113750 [Dacryopinax sp. DJM-731 SS1]
          Length = 1596

 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 115/453 (25%), Positives = 196/453 (43%), Gaps = 90/453 (19%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL----FKLGKQKVFGESM 838
            RLE +GD+FLK A +I ++  YP+ HEG+LS L+   V N  L    ++LG   ++  ++
Sbjct: 998  RLEFLGDTFLKLATSIHIFNKYPHRHEGQLSVLKDGSVRNTYLRGKAYRLG---IYHYNV 1054

Query: 839  IATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
                  P+  W+PP                                              
Sbjct: 1055 TDKVCGPK-RWMPP---------------------------------------------- 1067

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL- 957
                 T    +  V+PY  V Q S+  + ++DCVE+L+GA  +  G  G L   + +GL 
Sbjct: 1068 ----VTTHTTLDGVIPY--VKQTSL-RRCLSDCVESLLGAGYLCGGLDGLLRTGTAIGLC 1120

Query: 958  -KVIPPVTNPESKHLSDVLLDGFDK----FEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
               + P ++   ++  D    G        ++++ Y F++   LL+A+TH + F ++ T 
Sbjct: 1121 FGGMEPWSH---RYTGDSPSCGASTSLRLLQDTLGYEFRNPLLLLEALTHPT-FPDSQTP 1176

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFF 1071
             YQRLEFLGDA++D  I  +L+    A +   LT ++  +V N +  ++A+R LG +   
Sbjct: 1177 SYQRLEFLGDAVVDVFIVDYLFHKFPACTAHKLTWMKHLIVCNSLLGAVAIRELGLYKHM 1236

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFT-LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
             +++  L   I   V++     +  L ++++          + + PKAL D+ E+V GA+
Sbjct: 1237 LYMARRLDLEITLSVRVLEPLSYQELAEKWW----------EFDPPKALNDVLEAVLGAV 1286

Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENA----RFSKPEKLAD 1186
             +D+   L     V   + K  +      VP  P+ EL            RF K  +  D
Sbjct: 1287 LVDTNYDLQLCRPVLERLFKDILPLAHPDVPLHPVMELYMWAARKGCTRIRFEKSRQ-RD 1345

Query: 1187 GRRVRVTVEVFGKGS--YKGIGRNYCIAKCTAA 1217
                + T  V    +   +  G +  IAKC AA
Sbjct: 1346 ESNSKDTFHVLVHDTEISRSTGDSLSIAKCFAA 1378



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/57 (35%), Positives = 27/57 (47%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            Y RLEFLGD  L    + H++        G L+ L+   V N      A RLG +H+
Sbjct: 996  YDRLEFLGDTFLKLATSIHIFNKYPHRHEGQLSVLKDGSVRNTYLRGKAYRLGIYHY 1052


>gi|385047864|gb|AFI39693.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  110 bits (275), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 95/170 (55%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A  +L+ELKEL DN L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIMLHELKELDDNHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEENSAAPQLNKENIAVYNRRLPGCFSNCRPVPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVITRAGEFLVNL 189


>gi|426194802|gb|EKV44733.1| hypothetical protein AGABI2DRAFT_209093 [Agaricus bisporus var.
            bisporus H97]
          Length = 1524

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 176/405 (43%), Gaps = 81/405 (20%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-----KQKVFGE 836
            +RLET+GD+ LK+ + + +   YP  HEG L+  +   V+N NL K        + +  E
Sbjct: 1031 QRLETLGDTVLKFLVALQVLVEYPLWHEGYLTKKKDHTVANVNLAKENINHRLYRWIIKE 1090

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
             M+  K+ PR                           ++   LP    LS EK++E +  
Sbjct: 1091 IMLGRKWRPR---------------------------YSTKLLPPTTPLSEEKIVEELLM 1123

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG-PRG---ALLFM 952
              VD    +     +        Q  +  K +AD VE+LIGA  I  G P G     LF 
Sbjct: 1124 -VVDEGAELSSKGAAKKKKKSKNQ-GLSTKILADVVESLIGAAYIHGGFPLGYECTKLFG 1181

Query: 953  SWLGLKVIPPVTNPE--SKHLSDVLLD-----GFDKFEESINYRFKDKSYLLQAMTHASY 1005
              LGL+ +PP   PE     L  V  D          E+ + Y FK K  LL+A+THASY
Sbjct: 1182 --LGLRWLPP---PERIKDFLGAVEPDKNIPSALYYVEKMLGYTFKHKVLLLEALTHASY 1236

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNIIFASLAVR 1064
              +  T  Y+R+EFLGD++LD ++T +LY    + +SPG +   RS++VN    A + ++
Sbjct: 1237 QQDARTVSYERMEFLGDSVLDMVVTDYLYHAPGKNYSPGHIHLRRSSVVNTHFLAYICLK 1296

Query: 1065 LGFHHFFKHLSP-----GL------HEVI---------QRFVKMQAENDFTLNQEY-YLM 1103
                  F  L P     G+       EV+          R +  QA       +    + 
Sbjct: 1297 TSVK--FDALMPRADDEGIELLADAQEVMLWQCLLHSSSRIMDDQANTHTRFKKRREEIE 1354

Query: 1104 EGECDEA-------EDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            EG  ++          ++ PK   D+ ESV GA++LDS   +DT 
Sbjct: 1355 EGLMNDTIFPWAALTRLQAPKFFSDIIESVIGAVFLDSNGDIDTA 1399


>gi|395330301|gb|EJF62685.1| hypothetical protein DICSQDRAFT_104190 [Dichomitus squalens LYAD-421
            SS1]
          Length = 1453

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 161/396 (40%), Gaps = 74/396 (18%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET GD+ LK    + LY  YP+ HEG+             L  + +  +   +++A 
Sbjct: 969  QRLETFGDAVLKLCAVVHLYNRYPHRHEGQ-------------LDNMKRTAIANRTLLAR 1015

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
              E               LE  L        LW  +                        
Sbjct: 1016 ALE-------------HGLEEHLTPETQSIRLWRYV------------------------ 1038

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
              T D  + +V P     +   P +S+ DC+EA++GA     G   AL   + LGL    
Sbjct: 1039 -VTGDEALFAVRPCRRALRQ-YPRRSLQDCMEAILGASFATGGIDMALRAGTALGLSFGG 1096

Query: 962  PVTNPESKHLSDVLLDG-----FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC--Y 1014
            P   P     S  L +      F   +E++ Y FK    LL+A+TH S+     TDC  Y
Sbjct: 1097 P--TPWYVRYSGRLKEAPAAPLFAGLQETLGYTFKHGHLLLEAITHPSF---RSTDCSSY 1151

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKH 1073
            QRLEFLGDA +D ++T +LY    + + G L+  RS  V    FAS+AV RL  H     
Sbjct: 1152 QRLEFLGDAFIDMVVTEYLYRKFPSATSGQLSWARSRAVCGPAFASIAVKRLALHKLLLI 1211

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             +  L   I + V +  E                      + PKAL D+ ESV GA+++D
Sbjct: 1212 NNVELSMAISKHVPILEEITDEEIII---------NGWKHDPPKALSDVLESVLGALFVD 1262

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
               + D    +   +++  +  L   +PK P+ EL+
Sbjct: 1263 CDYNYDKAAAITEMVLEDLLAALRPDLPKDPVTELM 1298


>gi|449543396|gb|EMD34372.1| hypothetical protein CERSUDRAFT_55073 [Ceriporiopsis subvermispora B]
          Length = 1702

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 166/396 (41%), Gaps = 78/396 (19%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GD+ LK    + L+  YP+ HEG+L  LR   V N              +++A   
Sbjct: 976  LETLGDAVLKLGAAVHLFNKYPHRHEGQLDMLRRTCVCN-------------RTLLARGL 1022

Query: 844  EPRDNWLPPGYFVPKYL--ETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            E         + + +YL  ET  I A      W  ++        P              
Sbjct: 1023 E---------HGLEQYLTSETQHIRA------WRYIAPEGHDPSDPR------------- 1054

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                        PY    + S P +SI DC+EA +GA     G + AL   + LGL    
Sbjct: 1055 ------------PYRHAAR-SFPRRSIQDCMEATLGAAFATGGIQMALRAGTALGLSFGG 1101

Query: 962  PVTNPESKHLSDVLLDG-----FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            P+  P +      L        F + +E + ++FK    LL+A+TH S F +  T  YQR
Sbjct: 1102 PL--PWTARYGGRLPAKDASPLFTELQEVLGHQFKHGQLLLEAVTHPS-FGSYETTSYQR 1158

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLS 1075
            LEFLGDA++D ++ R+LY      + G L+  RS  V     A +AV  L  H      +
Sbjct: 1159 LEFLGDALIDLVVMRYLYFKYPRATSGQLSWARSRAVCASALAWVAVNCLELHKMMLVNN 1218

Query: 1076 PGLHEVIQRFVKMQAE--NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             GL   I ++V +  E  N   +N  +             + PKA+ D+ ESV GA+ +D
Sbjct: 1219 VGLSVAIGKYVPILKEISNIDIINNGW-----------KQDPPKAISDVLESVLGAVLVD 1267

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
             G   +    V    M   +  L+  +P+ PI EL+
Sbjct: 1268 CGYDFEKAAAVVELTMADLLAVLTPDLPRDPISELM 1303


>gi|121713724|ref|XP_001274473.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
 gi|119402626|gb|EAW13047.1| RNase3 domain protein [Aspergillus clavatus NRRL 1]
          Length = 1552

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 170/420 (40%), Gaps = 100/420 (23%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1093 QIHFQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTA 1152

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
            K++     + +  F  R  W P G                                    
Sbjct: 1153 KKRQIYRYIRSRSFS-RHVWYPDG------------------------------------ 1175

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP---- 945
             L +++ K    D +  M  Q+        +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1176 -LTLLQGK----DHSKKMLSQA--------KHALGEKTIADVCEALIGACLLSGGPEHRF 1222

Query: 946  ----RGALLFMS-----------WLGLKVIP--PVTNPESKHLSDVLLDGFDKFEESINY 988
                +   +F+            ++GL   P   V   E    +  L     + EE + Y
Sbjct: 1223 DMGVKAVSVFVDSPSHAVSRWKEYIGLYKPPNYQVRKAEGAETNLAL-----QVEEKLGY 1277

Query: 989  RFKDKSYLLQAMTHAS-----YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
             F+    L  A+TH S     YF      CYQRLEFLGD++LD +    L+       P 
Sbjct: 1278 HFRYPRLLCSAVTHPSTPSTWYFR---VPCYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQ 1334

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LT+ + A+V+N    +LAV+LGFH   K  S  L   I  +V           +E    
Sbjct: 1335 WLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYV-----------EEIETA 1383

Query: 1104 EGECDEAEDIEV-----PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            E E + A D  V     PK L D+ E+  GAI++DS  S + +   +   +K   + +S+
Sbjct: 1384 EAESEGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSI 1443



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 99/446 (22%), Positives = 169/446 (37%), Gaps = 84/446 (18%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            + C + LP  SP+ R +TG     K +A + AA + C +L   K LD+        F ++
Sbjct: 698  YVCEVILPEKSPI-RGLTGSPAIRKSIAKQSAAFDTCLLLRRHKLLDD-------FFKSI 749

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    P +       T   S K  Q+      S +   R     P  LY   + L   +P
Sbjct: 750  YHKRLPAMRNAKLAIT---SKKTNQYDMLLKPSIWR--RHQGILPSKLYGTILSL---LP 801

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCG-EVEVSIELIDKNVVLSEE 218
             E         P     Q + +LT + +P   +FPI+     E +V    +D  + LS E
Sbjct: 802  SE---------PLSREHQPILVLTREKLPDFPAFPIYLDEDIETKVVPRSLDTGMELSAE 852

Query: 219  NLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT-------VSDSEQIVIDWKF 271
             L     F   +F  V     +  +++    +  Y++ P             + +IDWK 
Sbjct: 853  ELRALTTFTLRIFRDV-----FHKVYEQESEKLPYWLAPAEPLDANGREPGPRGIIDWKT 907

Query: 272  MTLISEHHNDVI-QDI-PEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVH 329
            +T + E+   V  +D+ PE     F+FD+   R              + F+  ++M  + 
Sbjct: 908  VTFVQENDEIVFSRDLAPESLVNRFMFDKWDGR--------------SRFFTIKVMEGLR 953

Query: 330  ----PRSMFPSRTNTYQTFEEYYSLKYGLQIQNL-----EQPLLDVDHTSCRLNFLTPRY 380
                P S  P R +         SL    + + L     +QP+L  +    R N L    
Sbjct: 954  AADPPPSSVPRRRHMDNIMSYCLSLSKNSRARFLAGCHWDQPVLQAELVRLRRNLLD--- 1010

Query: 381  VNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNAL 440
                      T+EE +      +  +  +  E   I   P S+    ++ P+I+ RL++ 
Sbjct: 1011 --------KLTTEEKK------IQTECFICAEPLKISAIPPSIASTCLAFPAIITRLDSY 1056

Query: 441  LLA----DEIRTAVASEIGLGKVILD 462
            L++    DE+   + S+  L  V  D
Sbjct: 1057 LISIEACDELDLVIRSDYALEAVTKD 1082


>gi|158706457|sp|A1CBC9.2|DCL1_ASPCL RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1534

 Score =  110 bits (274), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 113/420 (26%), Positives = 170/420 (40%), Gaps = 100/420 (23%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1075 QIHFQRGMGKNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNTA 1134

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
            K++     + +  F  R  W P G                                    
Sbjct: 1135 KKRQIYRYIRSRSFS-RHVWYPDG------------------------------------ 1157

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP---- 945
             L +++ K    D +  M  Q+        +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1158 -LTLLQGK----DHSKKMLSQA--------KHALGEKTIADVCEALIGACLLSGGPEHRF 1204

Query: 946  ----RGALLFMS-----------WLGLKVIP--PVTNPESKHLSDVLLDGFDKFEESINY 988
                +   +F+            ++GL   P   V   E    +  L     + EE + Y
Sbjct: 1205 DMGVKAVSVFVDSPSHAVSRWKEYIGLYKPPNYQVRKAEGAETNLAL-----QVEEKLGY 1259

Query: 989  RFKDKSYLLQAMTHAS-----YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
             F+    L  A+TH S     YF      CYQRLEFLGD++LD +    L+       P 
Sbjct: 1260 HFRYPRLLCSAVTHPSTPSTWYFR---VPCYQRLEFLGDSLLDMVCVEDLFHRFPDRDPQ 1316

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LT+ + A+V+N    +LAV+LGFH   K  S  L   I  +V           +E    
Sbjct: 1317 WLTEHKMAMVSNKFLGALAVKLGFHKHIKAFSNPLQAQITYYV-----------EEIETA 1365

Query: 1104 EGECDEAEDIEV-----PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            E E + A D  V     PK L D+ E+  GAI++DS  S + +   +   +K   + +S+
Sbjct: 1366 EAESEGAVDYWVVAKDPPKCLPDMVEAYLGAIFVDSDFSFEVIEAFFQAQIKPYFQDMSI 1425



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 106/483 (21%), Positives = 182/483 (37%), Gaps = 88/483 (18%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +AI I+ RY + L  +  T       +  +       + C + LP  SP+ R +TG    
Sbjct: 647  SAIAILARYASSLQYEKETTPQATYVVQSVGN----TYVCEVILPEKSPI-RGLTGSPAI 701

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K +A + AA + C +L   K LD+        F ++Y    P +       T   S K 
Sbjct: 702  RKSIAKQSAAFDTCLLLRRHKLLDD-------FFKSIYHKRLPAMRNAKLAIT---SKKT 751

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
             Q+      S +   R     P  LY   + L   +P E         P     Q + +L
Sbjct: 752  NQYDMLLKPSIWR--RHQGILPSKLYGTILSL---LPSE---------PLSREHQPILVL 797

Query: 183  TTKYIPKVCSFPIFTRCG-EVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
            T + +P   +FPI+     E +V    +D  + LS E L     F   +F  V     + 
Sbjct: 798  TREKLPDFPAFPIYLDEDIETKVVPRSLDTGMELSAEELRALTTFTLRIFRDV-----FH 852

Query: 242  MLFDPNCSENSYFIVPT-------VSDSEQIVIDWKFMTLISEHHNDVI-QDI-PEKERE 292
             +++    +  Y++ P             + +IDWK +T + E+   V  +D+ PE    
Sbjct: 853  KVYEQESEKLPYWLAPAEPLDANGREPGPRGIIDWKTVTFVQENDEIVFSRDLAPESLVN 912

Query: 293  NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVH----PRSMFPSRTNTYQTFEEYY 348
             F+FD+   R              + F+  ++M  +     P S  P R +         
Sbjct: 913  RFMFDKWDGR--------------SRFFTIKVMEGLRAADPPPSSVPRRRHMDNIMSYCL 958

Query: 349  SLKYGLQIQNL-----EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL 403
            SL    + + L     +QP+L  +    R N L              T+EE +      +
Sbjct: 959  SLSKNSRARFLAGCHWDQPVLQAELVRLRRNLLD-----------KLTTEEKK------I 1001

Query: 404  GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA----DEIRTAVASEIGLGKV 459
              +  +  E   I   P S+    ++ P+I+ RL++ L++    DE+   + S+  L  V
Sbjct: 1002 QTECFICAEPLKISAIPPSIASTCLAFPAIITRLDSYLISIEACDELDLVIRSDYALEAV 1061

Query: 460  ILD 462
              D
Sbjct: 1062 TKD 1064


>gi|336365445|gb|EGN93795.1| hypothetical protein SERLA73DRAFT_115225 [Serpula lacrymans var.
            lacrymans S7.3]
          Length = 1493

 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 177/406 (43%), Gaps = 98/406 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD  LK+ ++I L   +P+ HEG L+  +   VSN  L K    K     +I  
Sbjct: 1040 ERLETLGDGVLKFIVSIHLMAAFPHWHEGYLTRRKDHGVSNAQLAKNAVLKKLYRWIIRD 1099

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F PR        + P+Y                C         +P +  + IK++ V++
Sbjct: 1100 RFTPRK-------WTPRY----------------C---------TPPQNEDQIKEE-VEV 1126

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYL--------IECGPRGALLFMS 953
            + +     ++V+         +  K +AD VE+LIGA          IEC     L  + 
Sbjct: 1127 EGSDSRKSRAVI-------EELSTKMLADVVESLIGAAYEHGGFDLGIECAKFFGL-GLE 1178

Query: 954  WLGLK-------VIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF 1006
            W GL         +   T+     ++DV        E  + Y F  K  L++A+THAS+ 
Sbjct: 1179 WWGLAKCVETALSVVETTDDFPAQVTDV--------ELMLGYNFTRKLLLIEALTHASHQ 1230

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYE-DERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
             +T T  Y+R+EFLGD+ILD +IT +LY    + +SPG +   +S++VN    A + +R 
Sbjct: 1231 FDTRTVSYERMEFLGDSILDMIITDYLYHVPGKGYSPGHMHMRKSSVVNTHFLAFICLRN 1290

Query: 1066 GFH-----------------------HFFKHLSPGLHEVIQ-------RFVKMQAENDFT 1095
                                      + ++ L    H +++       R+ K++A+ +  
Sbjct: 1291 SLKVDTSMPGPNHEGRITLNTQSQEIYLWQCLLHSSHTILEDQKTTFSRYNKVKAQIEDA 1350

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            L  +         +   ++ PK   D+ ES+ GA YLDSG +++ V
Sbjct: 1351 LQNDSIFPWAALTK---LQAPKFFSDMIESLIGAAYLDSGGNINVV 1393


>gi|336378007|gb|EGO19166.1| hypothetical protein SERLADRAFT_443209 [Serpula lacrymans var.
            lacrymans S7.9]
          Length = 1489

 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 105/406 (25%), Positives = 177/406 (43%), Gaps = 98/406 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD  LK+ ++I L   +P+ HEG L+  +   VSN  L K    K     +I  
Sbjct: 1036 ERLETLGDGVLKFIVSIHLMAAFPHWHEGYLTRRKDHGVSNAQLAKNAVLKKLYRWIIRD 1095

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F PR        + P+Y                C         +P +  + IK++ V++
Sbjct: 1096 RFTPRK-------WTPRY----------------C---------TPPQNEDQIKEE-VEV 1122

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYL--------IECGPRGALLFMS 953
            + +     ++V+         +  K +AD VE+LIGA          IEC     L  + 
Sbjct: 1123 EGSDSRKSRAVI-------EELSTKMLADVVESLIGAAYEHGGFDLGIECAKFFGL-GLE 1174

Query: 954  WLGLK-------VIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF 1006
            W GL         +   T+     ++DV        E  + Y F  K  L++A+THAS+ 
Sbjct: 1175 WWGLAKCVETALSVVETTDDFPAQVTDV--------ELMLGYNFTRKLLLIEALTHASHQ 1226

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYE-DERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
             +T T  Y+R+EFLGD+ILD +IT +LY    + +SPG +   +S++VN    A + +R 
Sbjct: 1227 FDTRTVSYERMEFLGDSILDMIITDYLYHVPGKGYSPGHMHMRKSSVVNTHFLAFICLRN 1286

Query: 1066 GFH-----------------------HFFKHLSPGLHEVIQ-------RFVKMQAENDFT 1095
                                      + ++ L    H +++       R+ K++A+ +  
Sbjct: 1287 SLKVDTSMPGPNHEGRITLNTQSQEIYLWQCLLHSSHTILEDQKTTFSRYNKVKAQIEDA 1346

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            L  +         +   ++ PK   D+ ES+ GA YLDSG +++ V
Sbjct: 1347 LQNDSIFPWAALTK---LQAPKFFSDMIESLIGAAYLDSGGNINVV 1389


>gi|358332039|dbj|GAA50765.1| endoribonuclease Dicer homolog 4 [Clonorchis sinensis]
          Length = 1042

 Score =  109 bits (273), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 68/229 (29%), Positives = 119/229 (51%), Gaps = 6/229 (2%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             +  + Y+FKD S L++A+TH S    +L   YQRLEFLGDA+L Y+IT +LYE      
Sbjct: 796  LQNILGYQFKDISLLIRALTHQSSPQTSLFGSYQRLEFLGDAVLGYVITIYLYEKHVEFD 855

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            PG LT+ RS +V+N   A   V    H +  H  P     +  F++   +   +++ +  
Sbjct: 856  PGQLTESRSNIVSNNSLACAIVEHQLHPYIIHNQPAFDTAVT-FIQFILDTTTSVSDQLE 914

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
            L+  E  +   +++   L D+FE++ GAI++D+  SL TV ++ + ++   I+   +  P
Sbjct: 915  LLNQEVLKGLRVKI---LADVFEAIVGAIFVDTKGSLSTVSQLIHRLLDPRIDDYLLRNP 971

Query: 1162 KSPIRELLELEPE-NARFSKPEKLADGRRVRVTVEVFGKGSYK-GIGRN 1208
             +P++ +  L P       + E+   G++ ++   V G   +  G  RN
Sbjct: 972  MNPLKSMHILHPRLKYTEGQIEEAEAGKKYKLCAMVSGGQVFTYGATRN 1020


>gi|440468299|gb|ELQ37466.1| RNase3 domain-containing protein [Magnaporthe oryzae Y34]
 gi|440485699|gb|ELQ65629.1| RNase3 domain-containing protein [Magnaporthe oryzae P131]
          Length = 1658

 Score =  109 bits (273), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 172/416 (41%), Gaps = 88/416 (21%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  G + +RLE +GD FLK A +I LY T     E +    R   + N NL     +
Sbjct: 1073 NFQSGMGQNYERLEFLGDCFLKMATSIALY-TLVEGDEFEYHVERMLDICNKNLLNWALE 1131

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W PPG                                     L
Sbjct: 1132 SNLQEHIRSKSFN-RRTWYPPG-------------------------------------L 1153

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            +++K K  ++D                 +H++ DKSIAD  EALIGA  +    + +  F
Sbjct: 1154 KLLKGKKTEVD----------------DEHALGDKSIADVCEALIGAAYLTAQAQSSPNF 1197

Query: 952  MSWLGLKVIPPVTNPESKHL--------------------SDVLLDGFDKFEESINYRFK 991
               L +K +  +T+ ++  +                    S   L+   + +  + YRFK
Sbjct: 1198 D--LAVKAVTVMTHSKTHTMQAWSDYYASYQCPEWLSTPPSQTQLELCSQIKNKMGYRFK 1255

Query: 992  DKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            +   L  A  H SY   + N  +  YQRLEFLGD++LD +   +L++      P  LT+ 
Sbjct: 1256 NPRLLRCAFMHPSYPRQYENIPS--YQRLEFLGDSLLDMVCVDYLFKKHPDKDPQWLTEH 1313

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ-EYYLMEGEC 1107
            + A+V+N  F  +AV LGFH    H+ P L   I  + ++  +      Q      + E 
Sbjct: 1314 KMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRGQREE 1373

Query: 1108 DEAED--IEV---PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            D A D  IEV   PK L D+ E+  GA+++D+G     V   +   +K     +S+
Sbjct: 1374 DYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSI 1429



 Score = 40.0 bits (92), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 91/430 (21%), Positives = 154/430 (35%), Gaps = 85/430 (19%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F   + LP +SPL RS  G    +K LA   AA   C  LY    LD+ L     + +  
Sbjct: 671  FQGEVYLPASSPL-RSAMGGVYRSKQLAKCAAAYAMCIQLYNSNYLDDHLKSTLAKVLPA 729

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    V           S+K+R+ Y+ R      +    V     LYA+ + L  P  
Sbjct: 730  MRNARLAV-----------SSKKRKSYNMRTKPVLWS---EVGPLTELYAMVLSLAQPGA 775

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVS-IELI------DKN 212
               + R             + +LT K +P++  FP+F   G    S +  I         
Sbjct: 776  AYYHSRP------------ILLLTRKPLPEIAQFPLFFGKGSSRRSNVRCIPLAHPWSPT 823

Query: 213  VVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-----SDSEQIVI 267
                E   + TL     +F+K          F  + ++  YF+ P+      +D   +V 
Sbjct: 824  TTQVEGICAFTLCIFRDIFSKD---------FQASGTDMPYFLAPSTGIEHGTDLSSLVN 874

Query: 268  DWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTN 327
              + +   + H       +P     NF   +  F+D  V   +    +   F++ ++  +
Sbjct: 875  PERIIDWATVHRTTTTDRVPY----NFNEPDEFFQDKYVSDPFDGSRK---FFMRKVRRD 927

Query: 328  VHPRSMFPSRTNTYQTFE--EYYSLKYGLQI---------QNLEQPLLDVDHTSCRLNFL 376
            + P+   P        +   E+  L Y + +            +QP+++ +    R N L
Sbjct: 928  LKPQDKVPEGVPAPSKWRAVEHTILNYSVSLWKKSRAGHNSRQDQPVVEAELAPLRRNLL 987

Query: 377  TPRYVNRKGINLATTSEETRREIRESLGKKQL-LVPELCLIHPFPASLWRKSVSLPSILY 435
                            +ET  E   S G +   LV E  LI   P      + + P+I+Y
Sbjct: 988  ----------------DETDGE--NSTGPQTCYLVLETLLISQIPVDTVVMAYTFPAIIY 1029

Query: 436  RLNALLLADE 445
            RL   L++ E
Sbjct: 1030 RLENSLISLE 1039


>gi|154283385|ref|XP_001542488.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150410668|gb|EDN06056.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1359

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 187/485 (38%), Gaps = 105/485 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 923  QIHFQRGMGKNYERLEFLGDCFLKMATSISLFAMNPDNDEFDFHVKRMCLICNQNLFNTA 982

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E  + T+   R NW P G                                   K
Sbjct: 983  VRLKLYE-FVRTQGFSRRNWYPEGI----------------------------------K 1007

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP---- 945
            +L+   Q                 P +   + ++ DK+IAD  EALIGA L+  G     
Sbjct: 1008 LLQGKAQ-----------------PESAQNKQALGDKTIADICEALIGASLLSGGKACRF 1050

Query: 946  ----RGALLFM-----------SWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
                +   +F+           S++ L  +P     ++       LD   +    + Y F
Sbjct: 1051 DTAVKAVTVFVDSDNHRVSDWNSYIDLYSLPSYQIAQADAGQ---LDLAKQIGNRLGYHF 1107

Query: 991  KDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
                 L  A THASY    +   CYQRLEFLGD++LD +   +LY       P  LT+ +
Sbjct: 1108 TYPRLLRSAFTHASYPSAWSTVPCYQRLEFLGDSLLDMVCVEYLYHHYPDRDPQWLTEHK 1167

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE 1109
             A+V+N    ++ V+LG H    ++S  L   I R+            +E  +   E  +
Sbjct: 1168 MAMVSNKFLGAVTVKLGLHKHLLYISNALFGQITRYA-----------EEIEVAVAESAD 1216

Query: 1110 AEDI-----EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS---VP 1161
            + D      + PK L D+ E+  GAI++DS  S + V   +   +K   E +S+      
Sbjct: 1217 SPDAWTTTSDPPKCLPDMLEAYIGAIFVDSNFSFEVVEDFFQRYLKQYFEDMSIYDAFAN 1276

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCAL 1221
            K P       E +    ++P       R+   V V  K   +GI  +   AK  A+  AL
Sbjct: 1277 KHPTAG----EVQMVDSTEP-------RIYAAVIVHDKFVAQGIASSVRYAKTKASDAAL 1325

Query: 1222 KHLKS 1226
              L+ 
Sbjct: 1326 AKLEG 1330


>gi|326472405|gb|EGD96414.1| dicer [Trichophyton tonsurans CBS 112818]
          Length = 1519

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 122/259 (47%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWADYSRLYSL 1219

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             N ++   S   +D  ++ +  + Y FK    L  A  H SY   + N    CYQRLEFL
Sbjct: 1220 PNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1277

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1278 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQG 1337

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GAI++DS  + D
Sbjct: 1338 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFD 1390

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V + + + ++   E +SV
Sbjct: 1391 VVDEFFRKFIQHYFEDMSV 1409



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 92/404 (22%), Positives = 160/404 (39%), Gaps = 67/404 (16%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L + + LD       + FI+ 
Sbjct: 666  FICETILPEKSPI-RGCMGKSASRKLLAKQSAAFETCLLLRKNRLLD-------EYFIST 717

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    P + +   +      + +     K  A   +       +P  LYA  + L+    
Sbjct: 718  YHKRLPAM-RNARLAITSKKSNKYSMISKPAAWELSRG----ESPTVLYATVLSLS---- 768

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
             +  K  +  HP       + +LT   +P   SFP++     +C    + +E   K +  
Sbjct: 769  -DCQKLQKSYHP-------IVLLTRVPMPDFPSFPLYLEHNKKCSSCSIRVEEGLKVIPP 820

Query: 216  SEENLSN-TLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----VSDSEQI----V 266
              E L+  T   ++ +F K+         ++   S  SY I P     V+D ++     +
Sbjct: 821  ELELLTKFTFRVLEDVFHKI---------YEETSSLVSYLIAPAKLDGVTDIKKSNPVEL 871

Query: 267  IDWKFMTLISEHHNDVIQ-DIPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVA 322
            IDW+ +  I E+   +   D+P +  EN F+ D  + ++R      ++  + +PT     
Sbjct: 872  IDWQMLQYIQENEELLWSPDMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQD 925

Query: 323  EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVN 382
             +  NV  R    +  N   +  +    ++ ++  N +QP+L  +    R NFL      
Sbjct: 926  PVPENVARRRYMDNIMNYCLSLFKNSRARF-MERCNWDQPVLRSELIQLRRNFL------ 978

Query: 383  RKGINLATTSEETRREI-RESLGKKQLLVPELCLIHPFPASLWR 425
               I+    S      +  E+L    + VP    I  FPA +WR
Sbjct: 979  --DIDENQKSPPVDYYVCAEALKISAISVPLATQIFVFPAIIWR 1020


>gi|425772078|gb|EKV10503.1| RNA helicase/RNAse III, putative [Penicillium digitatum Pd1]
 gi|425777255|gb|EKV15436.1| RNA helicase/RNAse III, putative [Penicillium digitatum PHI26]
          Length = 1372

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/397 (27%), Positives = 159/397 (40%), Gaps = 87/397 (21%)

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
             Q  ++   G + +RLE +GDS LK A +I L+   P+  E      R   + N NLFK 
Sbjct: 1011 LQIHVQRGMGKNYERLELLGDSVLKMATSISLFVQNPDDDEYDYHVNRMCLICNKNLFKN 1070

Query: 829  GKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPE 888
              +    E + +  F  R  W PPG                       LSL   ++    
Sbjct: 1071 ATELKLYEFIRSRGFS-RHMWYPPG-----------------------LSLEYGRD---- 1102

Query: 889  KVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA 948
                    K VD +                 +HS+ +K+IAD  EALIGA L+  G    
Sbjct: 1103 ------HAKFVDSE----------------GKHSLSEKTIADVCEALIGASLLSGGDDHR 1140

Query: 949  LLFMSWLGLKVIPPVTNPESKHLSDVLLD-------------GFDKFE--------ESIN 987
                  + +K +    N + KH +    D               D FE        E + 
Sbjct: 1141 YD----MAVKAVTVFVNSQ-KHTATSWKDYISAYSIPLYQKKAADGFEMNLAQQIFEKVG 1195

Query: 988  YRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
            Y FK    L  A TH SY L      CYQRLE+LGDA+LD +   HL+       P  LT
Sbjct: 1196 YEFKYPRLLRSAFTHPSYPLTWAKVPCYQRLEYLGDALLDMVCVEHLFHRFPTRDPQWLT 1255

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYYLME 1104
            + + A+V+N    +LAV+LG H   +H S  L     ++ +    AE++      Y+L  
Sbjct: 1256 EHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEELQLAESESNGEVNYWLST 1315

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
             +         PK L D+ E+  GAI++DS      +
Sbjct: 1316 SDS--------PKCLPDMLEAYLGAIFVDSSFDFTVI 1344



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 108/488 (22%), Positives = 195/488 (39%), Gaps = 98/488 (20%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +AI ++ R+ + L  +    ++  +T   + E++S  F+C + +P  SP++R V G    
Sbjct: 583 HAIGVLARFASSLQYE--NEISAKVTYVVMSENES--FSCEVIMPEKSPVRR-VLGCCES 637

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
            K LA + AA +AC +L +   LD     V  + +    N +  +           ++KR
Sbjct: 638 KKSLAKQSAAFDACLLLRKRNLLDEHFNSVYHKRLPAMRNAKLAI-----------TSKR 686

Query: 123 RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
              Y  R        R     P  LYA+ ++L   IP E         P   +   + +L
Sbjct: 687 TDQYKMRTKPSIW-ARQQGTIPIRLYAILIRL---IPSE---------PLTRAHGSIVLL 733

Query: 183 TTKYIPKVCSFPIFTRCGEVEVSIE--LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
           + + I  + +FP+F    ++E +++   ID  + ++ E L     F   +F  V   K Y
Sbjct: 734 SREQITAIPTFPVFLD-DDIETTVQSLCIDGCLEVASEELEIVTAFTLAVFHDVFH-KTY 791

Query: 241 LMLFDPNCSEN-SYFIVPT-------VSDSEQIVIDWKFMTLISEHHNDVIQ-DI-PEKE 290
                 + SE   Y++VP        +S S   +IDW  +  + ++   V   D+ PE  
Sbjct: 792 -----KHVSEQFPYWLVPAREDIDVGMSTSLFDIIDWTALKYVQDNPKLVWSTDMEPESL 846

Query: 291 RENFVFDE--SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYY 348
              F++D+   K+R               YF +A +  N+ P    PS     +  ++  
Sbjct: 847 LNRFIYDDWNGKYR---------------YFPLA-VDPNLRPSDPPPSYAPCRKWSDDIM 890

Query: 349 SLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEE---TRREIRESLGK 405
           +    L   +                   P++ NR          E    RR   + +  
Sbjct: 891 NWSLSLSKNS------------------RPKFFNRCIWTQPVLQAELVCLRRNFLDKMAD 932

Query: 406 KQLLVPELCLIHPFP--ASLWRKSVS-----LPSILYRLNALLLADEIRTAVASEIGLGK 458
           ++ L    C+I P P   S   KSV+      P+I+ R+ + L+A+E        +GLG 
Sbjct: 933 EEKLSNSRCVICPQPLVLSTISKSVAATCFVFPAIITRMESYLIAEE----GCKLLGLGG 988

Query: 459 VILDEKVE 466
           + L+  +E
Sbjct: 989 IKLEFALE 996


>gi|358058780|dbj|GAA95743.1| hypothetical protein E5Q_02400 [Mixia osmundae IAM 14324]
          Length = 1610

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 170/402 (42%), Gaps = 69/402 (17%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G S + +ET+GDS LK   ++ LY  YP   EG L+ LR+  V N  L     +   G  
Sbjct: 1085 GRSYESIETLGDSVLKVLTSVHLYLAYPLKSEGALTCLRTNSVENVYLHHKAVESSLG-- 1142

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
                                KYL    I      + W    LP   E S +         
Sbjct: 1143 --------------------KYL----IHERMRLNTW----LPRDAEHSAD--------- 1165

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMS 953
             +   C  +  +Q               ++++DC+E+++GA  +  G   A+     F  
Sbjct: 1166 -MGDGCEFERKIQR--------------RALSDCIESILGAAYLTGGLSMAMDTARAFNL 1210

Query: 954  WLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
             LG        + E++     +     + E+ + Y F +   L+QA+TH SY L+  T  
Sbjct: 1211 PLGDGASWRSRSIEARRRERSVSPRIGELEDLVGYSFSNNDCLIQALTHRSY-LSPTTPS 1269

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA-VRLGFHHFFK 1072
            Y+R EFLGDA+LD+     LY      +P  L+ LR+ LV N     +A +RL    +  
Sbjct: 1270 YEREEFLGDAMLDFWAITRLYARFDGITPQQLSRLRALLVCNGTLGYVAMLRLRLGEYVL 1329

Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYL 1132
            H      E   +    Q + +     E+      C++    + PK LGD  E++AGAI++
Sbjct: 1330 H---NADEFTDQLEIAQQQAEAMPPAEF------CEQVWFWDPPKVLGDCVEAIAGAIFV 1380

Query: 1133 DSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            DSG   + V+K +  I+   ++ +S ++P  P+  L  L+ E
Sbjct: 1381 DSGGDPELVFKYFDRILGPLMQYISPNMPADPVSRLAHLKQE 1422


>gi|389633725|ref|XP_003714515.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
 gi|158706447|sp|A4RKC3.2|DCL1_MAGO7 RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
 gi|351646848|gb|EHA54708.1| dicer-like protein 1 [Magnaporthe oryzae 70-15]
          Length = 1591

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 172/416 (41%), Gaps = 88/416 (21%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  G + +RLE +GD FLK A +I LY T     E +    R   + N NL     +
Sbjct: 1073 NFQSGMGQNYERLEFLGDCFLKMATSIALY-TLVEGDEFEYHVERMLDICNKNLLNWALE 1131

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W PPG                                     L
Sbjct: 1132 SNLQEHIRSKSFN-RRTWYPPG-------------------------------------L 1153

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            +++K K  ++D                 +H++ DKSIAD  EALIGA  +    + +  F
Sbjct: 1154 KLLKGKKTEVD----------------DEHALGDKSIADVCEALIGAAYLTAQAQSSPNF 1197

Query: 952  MSWLGLKVIPPVTNPESKHL--------------------SDVLLDGFDKFEESINYRFK 991
               L +K +  +T+ ++  +                    S   L+   + +  + YRFK
Sbjct: 1198 D--LAVKAVTVMTHSKTHTMQAWSDYYASYQCPEWLSTPPSQTQLELCSQIKNKMGYRFK 1255

Query: 992  DKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            +   L  A  H SY   + N  +  YQRLEFLGD++LD +   +L++      P  LT+ 
Sbjct: 1256 NPRLLRCAFMHPSYPRQYENIPS--YQRLEFLGDSLLDMVCVDYLFKKHPDKDPQWLTEH 1313

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ-EYYLMEGEC 1107
            + A+V+N  F  +AV LGFH    H+ P L   I  + ++  +      Q      + E 
Sbjct: 1314 KMAMVSNQFFGCVAVGLGFHRHLIHMQPALGGSITEWAELVTKKREEARQLAVRRGQREE 1373

Query: 1108 DEAED--IEV---PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            D A D  IEV   PK L D+ E+  GA+++D+G     V   +   +K     +S+
Sbjct: 1374 DYARDFWIEVHHPPKCLPDILEAYVGALFVDTGYDYSAVVGFFDRHIKPYFADMSI 1429


>gi|326481629|gb|EGE05639.1| hypothetical protein TEQG_04648 [Trichophyton equinum CBS 127.97]
          Length = 1519

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 122/259 (47%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWADYSRLYSL 1219

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             N ++   S   +D  ++ +  + Y FK    L  A  H SY   + N    CYQRLEFL
Sbjct: 1220 PNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1277

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1278 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVNLNLHVHLIHISNTLQG 1337

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GAI++DS  + D
Sbjct: 1338 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFD 1390

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V + + + ++   E +SV
Sbjct: 1391 VVDEFFRKFIQHYFEDMSV 1409



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 160/403 (39%), Gaps = 65/403 (16%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L + + LD       + FI+ 
Sbjct: 666  FICETILPEKSPI-RGCMGKSASRKLLAKQSAAFETCLLLRKNRLLD-------EYFIST 717

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    P + +   +      + +     K  A   +       +P  LYA  + L+    
Sbjct: 718  YHKRLPAM-RNARLAITSKKSNKYSMISKPAAWELSRG----ESPTVLYATVLSLS---- 768

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
             +  K  +  HP       + +LT   +P   SFP++     +C    + +E   K V+ 
Sbjct: 769  -DCQKLQKSYHP-------IVLLTRVPMPDFPSFPLYLEHNKKCSSCSIRVEEGLK-VIP 819

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----VSDSEQI----VI 267
             E  L     F   +F  V     +  +++ N S  SY I P     V+D ++     +I
Sbjct: 820  PELELLTKFTFR--VFEDV-----FHKIYEENSSLVSYLIAPAKLDGVTDIKKSNPVELI 872

Query: 268  DWKFMTLISEHHNDVIQ-DIPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVAE 323
            DW+ +  I E+   +   D+P +  EN F+ D  + ++R      ++  + +PT      
Sbjct: 873  DWQMLQYIQENEELLWSPDMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQDP 926

Query: 324  IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR 383
            +  NV  R    +  N   +  +    ++ ++  N +QP+L  +    R NFL       
Sbjct: 927  VPENVARRRYMDNIMNYCLSLFKNSRARF-MERCNWDQPVLRSELIQLRRNFL------- 978

Query: 384  KGINLATTSEETRREI-RESLGKKQLLVPELCLIHPFPASLWR 425
              I+    S      +  E+L    + VP    I  FPA +WR
Sbjct: 979  -DIDENQKSPPVDYYVCAEALKISAISVPLATQIFVFPAIIWR 1020


>gi|226528435|ref|NP_001141713.1| uncharacterized protein LOC100273842 [Zea mays]
 gi|194705648|gb|ACF86908.1| unknown [Zea mays]
 gi|414870636|tpg|DAA49193.1| TPA: endoribonuclease Dicer [Zea mays]
          Length = 329

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/249 (34%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 982  FEESINYRFKDKSYLLQAMTHAS-YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
             E  + Y F DKS +  A+TH S Y+ N   D Y+RLE+LGD +L  L++R ++   R  
Sbjct: 51   IEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTL 110

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
             PG LT LR+A V+    A +AV  G H F +H +P L + I  F++   +     N   
Sbjct: 111  QPGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQDQICFFIEEMRKYPVHSNGL- 169

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                        ++ PK L D+ ES+ GAIYLDS    + VW+V+  +    I   ++  
Sbjct: 170  ------------LDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLG- 216

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTV----EVFGKGSYKGIGRNYCIAKCTA 1216
             K P+ EL E   +  R  K  K    + ++V V    EV G   Y   G    IA+  A
Sbjct: 217  -KHPVSELFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIY---GPKKEIAQNRA 272

Query: 1217 AKCALKHLK 1225
            AK AL  LK
Sbjct: 273  AKDALDKLK 281


>gi|238499729|ref|XP_002381099.1| dicer-1, putative [Aspergillus flavus NRRL3357]
 gi|220692852|gb|EED49198.1| dicer-1, putative [Aspergillus flavus NRRL3357]
          Length = 605

 Score =  109 bits (272), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 169/412 (41%), Gaps = 85/412 (20%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 148  QIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTA 207

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   + + +  F  R  W                   +P  L       + K++S E 
Sbjct: 208  LKKELYQYIRSRGFS-RHTW-------------------YPDGLTLLHGRDHRKKVSAE- 246

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
                                         ++H++ +K++AD  EALIGA L+     G L
Sbjct: 247  -----------------------------SKHALREKTVADVCEALIGASLLS----GGL 273

Query: 950  LFMSWLGLKVIPPVTN-PESKHL------SDVLL--------DGFD-----KFEESINYR 989
                 + +K +  V + P  K L      S  +L        DG++     K EE + YR
Sbjct: 274  HNQFDMAVKAVTAVVDSPNHKALCWADYTSSYMLPKYQTQSPDGYELDLGRKVEEKLGYR 333

Query: 990  FKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            FK    L  A TH SY        CYQRLEFLGD++LD +    L+       P  LT+ 
Sbjct: 334  FKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKDPQWLTEH 393

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYYLMEGE 1106
            + A+ +N    +LAV+LG H   +H S  L   I  + +    AEN+     +Y+L+   
Sbjct: 394  KMAMASNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQAAENESQGAVDYWLVTK- 452

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                   + PK L D+ E+  GA ++DS      V   +   +KS    +++
Sbjct: 453  -------DPPKCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRHVKSYFHDMTI 497


>gi|389747383|gb|EIM88562.1| hypothetical protein STEHIDRAFT_155914 [Stereum hirsutum FP-91666
            SS1]
          Length = 1722

 Score =  108 bits (271), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 74/247 (29%), Positives = 121/247 (48%), Gaps = 25/247 (10%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL-------------GLKVIPPVTNPE 967
            H + DK++AD  EA++GA  +  G   AL     L             G K + P  +  
Sbjct: 1318 HWLGDKTVADVAEAIVGAAYVTGGREAALKASKALCIAVPRVDRWSDFGRKALAPPPDVT 1377

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            ++    +     +  E  + ++F+    L QA+TH S     +T  Y+RLEF+GDAILD+
Sbjct: 1378 AR----LRAGSIEAVEAILGHKFERPHLLAQALTHGSIQGYEIT-SYERLEFIGDAILDF 1432

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            ++ RH+Y+ +   SPG +T L+ A+V+N   A++ +  G   +    +P L   I+ + +
Sbjct: 1433 MVIRHVYDRDTKLSPGAMTLLKGAMVSNSALAAVCIWAGLDEYLMFEAPVLAHNIRAYAQ 1492

Query: 1088 MQAENDFTLNQEYYLMEGECDEAE----DIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
               E      +EY L + E         + E PKAL D+ ES+ GA Y+    S   V K
Sbjct: 1493 KLREKQ---KEEYALAQQEGRSPGQYWLETEPPKALSDVVESIIGATYISDNFSPVGVEK 1549

Query: 1144 VYYEIMK 1150
            V+ +I+K
Sbjct: 1550 VFDKILK 1556



 Score = 46.6 bits (109), Expect = 0.078,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 39/74 (52%), Gaps = 2/74 (2%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD++LKY  +I+L+ T P+ HEG L   R + +SN  L            + A 
Sbjct: 1115 ERLELLGDAYLKYLSSIYLFVTNPSQHEGALHSARLRIISNKALLHNADAAGLPPFVQAK 1174

Query: 842  KFEPRDNWLPPGYF 855
             F  +  W PP YF
Sbjct: 1175 TFVAK-FWQPP-YF 1186



 Score = 45.1 bits (105), Expect = 0.28,   Method: Compositional matrix adjust.
 Identities = 90/443 (20%), Positives = 163/443 (36%), Gaps = 57/443 (12%)

Query: 25   PIITISEIKEDDSI-MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELK 83
            P+    E+  + +     C++ LP   P  R+  G    +   A R A  E C  L+   
Sbjct: 679  PLFGFEEVATNSAYPRVVCTVTLP-EGPAIRTFRGGPSSSFSQARRTACFETCSGLFHAG 737

Query: 84   ELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNT 143
             LD    P      + Y    P    T E++    ++              T C P    
Sbjct: 738  LLDYHFFPQPPRTSSPYRR-RPDESDTLELDEVGSASSLPPKGSAHNKQNGTRCYPRKRP 796

Query: 144  PCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKY-IPKVCSFPIFTRCGEV 202
              +  +++  LT   P   +              G  +L T+  +P V SF +F+  G  
Sbjct: 797  DFWTNSLQAGLTRLYPTIISVEISSSSSSAAGAHGPIVLLTRLPLPSVASFKLFS-SGVP 855

Query: 203  EVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLK------LKKYLMLFDP---------N 247
             ++       + + +  L +  ++   +   +L       L+K    F P          
Sbjct: 856  AIAHLRRGAAMEVDDAKLQDLHLYTIRICRAILNKHFVAPLEKMPYFFAPIRPSWPGFSG 915

Query: 248  CSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVM 307
              +N ++    V +     IDW  +++ +      IQ + +  ++  + D          
Sbjct: 916  SVDNRWYRAEVVKE-----IDWTQVSIAARDWVVPIQTLSDDLQDAIIQDR--------- 961

Query: 308  PWYRNQFEPTYFYVAEIMTNVHPRS--MFPSRTNTYQTFEEYYS--LKYGLQIQNLEQPL 363
             W   +F   +F V  I  ++ P S  +   R   Y  F EY     K    ++N +QPL
Sbjct: 962  -WV--EFTRRHF-VVRIRPDLTPMSKPVDSPREEGYDNFVEYCKEHRKNFQGLRNYDQPL 1017

Query: 364  LDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASL 423
            ++V      +N L P  V ++      ++  T+ +++        L+PELC      AS 
Sbjct: 1018 IEVGRVGVVMNVLNP--VTKQ------STPPTKPDVK-------YLIPELCCKFTIAAST 1062

Query: 424  WRKSVSLPSILYRLNALLLADEI 446
            +R ++ LPSI  R+  LLL  E+
Sbjct: 1063 FRTALLLPSITRRIEDLLLVKEL 1085


>gi|296809942|ref|XP_002845309.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
 gi|238842697|gb|EEQ32359.1| dicer-like protein 1 [Arthroderma otae CBS 113480]
          Length = 1521

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 133/525 (25%), Positives = 216/525 (41%), Gaps = 92/525 (17%)

Query: 661  NSKAEFV-KVIQDKLTFYEGQLELIKNRIDVENTIKENQPV--HIVRQSFDNASNPSKNT 717
            NS+A F+ K   D+       ++L +N +D++   K+  PV  +I  ++   +S P    
Sbjct: 952  NSRARFLAKCNWDQPVLRAELIQLRRNFLDIDEN-KKGPPVDYYICAEALKISSIPMPVA 1010

Query: 718  AILTEILENINKLNTYG-SVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENH 776
             ++      I+++ +Y  ++E   K + K   +     + +++    +   + Q   ++ 
Sbjct: 1011 TLIFVFPAMISRMESYLIALEACEKLQLKISPELALEALTKDSENTEEHGLE-QIRFQSG 1069

Query: 777  TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
             G + +RLE +GD FLK A +I L+   P+  E      R   + N NL        F  
Sbjct: 1070 MGKNYERLEFLGDCFLKMATSISLFAMNPDNDEYDFHVKRMLLICNQNL--------FNN 1121

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
            ++I   F              KY+ +      F    W            PE  L ++K 
Sbjct: 1122 AIILEVF--------------KYIRSK----SFSRRGW-----------YPEG-LTLLKG 1151

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP--------RGA 948
            K        D       P      H++ DKSIAD  EALIGA L+  GP        +  
Sbjct: 1152 K--------DKKENPGGP-----THALADKSIADVCEALIGASLLAGGPDHKFDMATKAV 1198

Query: 949  LLFMS--------WLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAM 1000
             +F++        W     +  +T  ++   +    D  ++ EE + YRFK    L  A 
Sbjct: 1199 TIFVNSDDHRVERWADYSTLYSLTTYQTAAATASEADVANQIEEKLGYRFKYPKLLRSAF 1258

Query: 1001 THASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057
             H SY   + N    CYQRLEFLGD++LD     HL+       P  LT+ + A+V+N  
Sbjct: 1259 MHPSYPSQWANV--PCYQRLEFLGDSLLDMACVNHLFTKYPDKDPQWLTEHKMAMVSNKF 1316

Query: 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVK----MQAENDFTLNQEYYLMEGECDEAEDI 1113
              SLAV L  H    H+S  L   I  + +    M+ E    L    Y  E         
Sbjct: 1317 LGSLAVGLNLHVHLIHISNVLQGQITCYTEELQAMKMEMGGNLEAWTYTNEP-------- 1368

Query: 1114 EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
              PK L D+ E+  GAI++DS  + D +   +   ++   E ++V
Sbjct: 1369 --PKCLPDIVEAYLGAIFVDSNFNFDVIDDFFKRFIQHYFEDMTV 1411



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 108/454 (23%), Positives = 182/454 (40%), Gaps = 100/454 (22%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L +   LDN        FI+ 
Sbjct: 668  FICEAILPEKSPV-RGCMGKPASRKLLAKQSAAFETCLILRKNGLLDN-------YFIST 719

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    P +       T   S K  Q+      + +   R   ++P  LYA  + L+    
Sbjct: 720  YHKRLPAMRNARLAIT---SKKSNQYRMISKPAAWEYARG--DSPTVLYATILSLS---- 770

Query: 160  DEQNKRG--RKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNV 213
               N  G  +K HP       L +LT   +P   SFP++    T+C    + ++   K +
Sbjct: 771  ---NSEGLRKKYHP-------LVLLTRVPMPDFPSFPLYLENNTKCSSCSIRVDKALKVL 820

Query: 214  VLSEENLSN-TLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFI-------VPTVSDSEQI 265
             +  + L+N T    + +F K+         ++ + S  SY+I       +P +  S  +
Sbjct: 821  PVELDLLTNFTFRVFEDVFHKI---------YEEDSSLVSYWIAPAKLDDIPDIKKSNPV 871

Query: 266  -VIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPW---YRNQFEPTYFYV 321
             +I+W+ +  I +   + +   PE   +   F E++F   +V  W   YR      YF +
Sbjct: 872  EIINWQMLQYIRD--TEELHWSPEMPTD---FLENRF---LVDRWDGRYR------YFSI 917

Query: 322  AEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI-----------QNLEQPLLDVDHTS 370
             E+    HP+   P      +  +    + YGL +            N +QP+L  +   
Sbjct: 918  -EVDPARHPKDPVPENVARRRYMDNI--MNYGLSLFKNSRARFLAKCNWDQPVLRAELIQ 974

Query: 371  CRLNFLTPRYVNRKG--INLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSV 428
             R NFL     N+KG  ++    +        E+L    + +P   LI  FPA + R   
Sbjct: 975  LRRNFLDIDE-NKKGPPVDYYICA--------EALKISSIPMPVATLIFVFPAMISR--- 1022

Query: 429  SLPSILYRLNALLLADEIRTAVASEIGLGKVILD 462
             + S L  L A    ++++  ++ E+ L  +  D
Sbjct: 1023 -MESYLIALEA---CEKLQLKISPELALEALTKD 1052


>gi|313224452|emb|CBY20242.1| unnamed protein product [Oikopleura dioica]
          Length = 2082

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 176/414 (42%), Gaps = 88/414 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE  GDSF+K A T  LY  Y +  +G+L+  R   +SN N  KL K ++   S +  
Sbjct: 1690 ERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGAYISNANFLKLLKLRLSDGSCLQ- 1748

Query: 842  KFEPRDNWLPPGYFVPKYLE--------TALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
                          +P+Y+         + +I A  P  L++     N  E         
Sbjct: 1749 --------------IPRYMNCYDNSRKTSGVIRA--PGYLYSYKLDDNGDETD------- 1785

Query: 894  IKQKCVDLDCTVDMNVQSVVPYNLV---TQHSIPDKSIADCVEALIGAYLIECGPRGALL 950
            I     D    V    +    +N +   ++    DK  AD VE+LIGAYL+  G + A  
Sbjct: 1786 IFPPVTDCSQFVSETFRDT-HFNYMFFDSKDKRVDKKTADVVESLIGAYLVTGGEKMAAR 1844

Query: 951  FMSWLG-LKVIPPVTNPESKHLSDVLLDG-------FDKFEESINYRFKDKSYLLQAMTH 1002
            F+  L  L  +   ++PE   L + L++         D+ +  + Y FK       A+  
Sbjct: 1845 FVIMLNNLYTMTVDSSPE--FLEEDLVEPDPRTQSIIDELQNELEYTFKTPHLCRLALAK 1902

Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH-SPGTLTDLRSALVNNIIFASL 1061
              Y  +   D ++RLEFLGDA+LDYL+   LY    A    G LTDL+ ++ +N +F SL
Sbjct: 1903 KKYTKDP-KDNFERLEFLGDAVLDYLVVDELYNRRSAALDSGQLTDLKQSITSNNLFGSL 1961

Query: 1062 AVRLG---------------------FHHFFKHLSPGLHEV-----IQRFVKMQAENDFT 1095
            A  +G                        F   L+   H V     ++R ++    N+ T
Sbjct: 1962 AFCMGLPQSTLMKASAAKDHISCMYKLEQFKNLLNKPKHGVPLNPDLKRVLEKANWNNKT 2021

Query: 1096 LNQ----EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
             N+      YL+          ++PK  GD+FES+ GA++LD    L  +W +Y
Sbjct: 2022 SNRAGPYSSYLL----------DIPKWFGDVFESMFGAVWLDCNQCLPEIWDIY 2065



 Score = 43.5 bits (101), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 28/70 (40%), Positives = 36/70 (51%), Gaps = 7/70 (10%)

Query: 994  SYLLQAMTH--ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            S LL+A+T   A+ F N      +RLEF GD+ +    TR LYE     S G LT  R A
Sbjct: 1672 SLLLRALTQPTANDFFNL-----ERLEFFGDSFIKIACTRMLYEKYAHFSDGELTSARGA 1726

Query: 1052 LVNNIIFASL 1061
             ++N  F  L
Sbjct: 1727 YISNANFLKL 1736


>gi|357462157|ref|XP_003601360.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355490408|gb|AES71611.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 783

 Score =  108 bits (271), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 77/245 (31%), Positives = 126/245 (51%), Gaps = 20/245 (8%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
            E  + Y FK+   L +A TH +Y   N L+  Y+RLE++GD++L+ +IT   +      +
Sbjct: 448  EAILEYEFKNILLLEEAFTHCTYGAENGLS--YERLEYIGDSVLNLMITTEQFHAYPTLA 505

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            PG LT LR+A V+    A +A++ G H + +H  P L + IQ F+K   E     N    
Sbjct: 506  PGHLTRLRAANVDTEKLARVAIKYGLHRYVRHKKPLLGDEIQAFIKEVVEYPLHSNGL-- 563

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV- 1160
                       I+VPK L D+ ES  GAI++D G S++TVWK + +++   I+  ++   
Sbjct: 564  -----------IDVPKILADIVESTIGAIFVDCGSSIETVWKFFKKLLVPVIDPHTIQRH 612

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
            P + + E  +      +F    K+++   V ++ E+ G G     G    IA   AAK A
Sbjct: 613  PSAELNEFCQKRGLKLQFRDLWKVSEIVEVLISEELVGSGK---CGSKKEIAHNRAAKNA 669

Query: 1221 LKHLK 1225
            L+++K
Sbjct: 670  LEYMK 674


>gi|302662009|ref|XP_003022664.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
 gi|291186623|gb|EFE42046.1| hypothetical protein TRV_03185 [Trichophyton verrucosum HKI 0517]
          Length = 1510

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWADYSRLYSL 1210

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             N ++   S   +D  ++ +  + Y FK    L  A  H SY   + N    CYQRLEFL
Sbjct: 1211 PNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1268

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1269 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQG 1328

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GAI++DS  + D
Sbjct: 1329 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFD 1381

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + ++   E +SV
Sbjct: 1382 VVDDFFRKFIQHYFEDMSV 1400



 Score = 47.0 bits (110), Expect = 0.074,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 161/403 (39%), Gaps = 65/403 (16%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L + + LD       + FI+ 
Sbjct: 657  FICETILPEKSPI-RGCMGKSASRKLLAKQSAAFETCLLLRKNRLLD-------EYFIST 708

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    PV+ +   +      + +     K  A   +       +P  LYA  + L+    
Sbjct: 709  YHKRLPVM-RNARLAITSKKSNKYSMISKPAAWELSRG----ESPTVLYATVLSLS---- 759

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
             +  K  +  HP       + +LT   +P   +FP++     +C    + +E   K V+ 
Sbjct: 760  -DCEKLQKSYHP-------IVLLTRVPMPDFPAFPLYLEHNKKCSSCSIRVEEGLK-VIP 810

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----VSDSEQI----VI 267
             E  L     F   +F  V     +  +++ N S  SY I P     V+D ++     +I
Sbjct: 811  PELELLTKFTFR--VFEDV-----FHKIYEENSSLVSYLIAPAKLDGVTDIKKSNPVELI 863

Query: 268  DWKFMTLISEHHNDVIQ-DIPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVAE 323
            DW+ +  I E+   +   D+P +  EN F+ D  + ++R      ++  + +PT      
Sbjct: 864  DWQMLQYIQENEELLWSPDMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQDP 917

Query: 324  IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR 383
            +  NV  R    +  N   +  +    ++ ++  N +QP+L  +    R NFL       
Sbjct: 918  VPENVARRRYMDNIMNYCLSLFKNSRARF-MKRCNWDQPVLRSELIQLRRNFL------- 969

Query: 384  KGINLATTSEETRREI-RESLGKKQLLVPELCLIHPFPASLWR 425
              I+    S      +  E+L    + VP    I  FPA +WR
Sbjct: 970  -DIDENQKSPPVDYYVCAEALKISAISVPLATQIFVFPAMIWR 1011


>gi|409076508|gb|EKM76879.1| hypothetical protein AGABI1DRAFT_77978 [Agaricus bisporus var.
            burnettii JB137-S8]
          Length = 1528

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 117/405 (28%), Positives = 177/405 (43%), Gaps = 81/405 (20%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-----KQKVFGE 836
            +RLET+GD+ LK+ + + +   YP  HEG L+  +   V+N +L K        + +  E
Sbjct: 1031 QRLETLGDTVLKFLVALQVLVEYPLWHEGYLTKKKDHTVANVSLAKENINHRLYRWIIKE 1090

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
             M+  K+ PR                           ++   LP    LS EK++E +  
Sbjct: 1091 IMLGRKWRPR---------------------------YSTKLLPPTTPLSEEKIVEELLM 1123

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG-PRG---ALLFM 952
              VD    +     +    N   Q  +  K +AD VE+LIGA  I  G P G     LF 
Sbjct: 1124 -VVDEGAELSSKGAARKKKNSKNQ-GLSTKILADVVESLIGAAYIHGGFPLGYECTKLFG 1181

Query: 953  SWLGLKVIPPVTNPE--SKHLSDVLLD-----GFDKFEESINYRFKDKSYLLQAMTHASY 1005
              LGL+ +PP   PE     L  V  D          E+ + Y FK K  LL+A+THASY
Sbjct: 1182 --LGLRWLPP---PERIKDFLGAVEPDKNIPSALYYVEKMLGYTFKHKVLLLEALTHASY 1236

Query: 1006 FLNTLTDCYQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNIIFASLAVR 1064
              +  T  Y+R+EFLGD++LD ++T +LY   ++ +SPG +   RS++VN    A + ++
Sbjct: 1237 QQDARTVSYERMEFLGDSVLDMVVTDYLYHAPDKNYSPGHIHLRRSSVVNTHFLAYICLK 1296

Query: 1065 LGFHHFFKHLSP-----GL------HEVI---------QRFVKMQAENDFTLNQEY-YLM 1103
                  F  L P     G+       EV+          R +  QA       +    + 
Sbjct: 1297 TSVK--FDALMPRADDEGIELLADAQEVMLWQCLLHSSSRIMDDQANTHTRFKKRREEIE 1354

Query: 1104 EGECDEA-------EDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            EG  ++          ++ PK   D+ ESV GA+YLDS   + T 
Sbjct: 1355 EGLMNDTIFPWAALTRLQAPKFFSDIIESVLGAVYLDSNGDIGTA 1399


>gi|302511053|ref|XP_003017478.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
 gi|291181049|gb|EFE36833.1| hypothetical protein ARB_04359 [Arthroderma benhamiae CBS 112371]
          Length = 1510

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1151 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVEKWADYSRLYSL 1210

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             N ++   S   +D  ++ +  + Y FK    L  A  H SY   + N    CYQRLEFL
Sbjct: 1211 PNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1268

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1269 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQG 1328

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GAI++DS  + D
Sbjct: 1329 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFD 1381

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + ++   E +SV
Sbjct: 1382 VVDDFFRKFIQHYFEDMSV 1400



 Score = 47.0 bits (110), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 94/403 (23%), Positives = 161/403 (39%), Gaps = 65/403 (16%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L + + LD       + FI+ 
Sbjct: 657  FICETILPEKSPI-RGCMGKSASRKLLAKQSAAFETCLLLRKNRLLD-------EYFIST 708

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    PV+ +   +      + +     K  A   +       +P  LYA  + L+    
Sbjct: 709  YHKRLPVM-RNARLAITSKKSNKYSMISKPAAWELSRG----ESPTVLYATVLSLS---- 759

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
             +  K  +  HP       + +LT   +P   +FP++     +C    + +E   K V+ 
Sbjct: 760  -DCEKLQKSYHP-------IVLLTRVPMPDFPAFPLYLEHNKKCSSCSIRVEEGLK-VIP 810

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----VSDSEQI----VI 267
             E  L     F   +F  V     +  +++ N S  SY I P     V+D ++     +I
Sbjct: 811  PELELLTKFTFR--VFEDV-----FHKIYEENSSLVSYLIAPAKLDGVTDIKKSNPVELI 863

Query: 268  DWKFMTLISEHHNDVIQ-DIPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVAE 323
            DW+ +  I E+   +   D+P +  EN F+ D  + ++R      ++  + +PT      
Sbjct: 864  DWQMLQYIQENEELLWSPDMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQDP 917

Query: 324  IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR 383
            +  NV  R    +  N   +  +    ++ ++  N +QP+L  +    R NFL       
Sbjct: 918  VPENVARRRYMDNIMNYCLSLFKNSRARF-MKRCNWDQPVLRSELIQLRRNFL------- 969

Query: 384  KGINLATTSEETRREI-RESLGKKQLLVPELCLIHPFPASLWR 425
              I+    S      +  E+L    + VP    I  FPA +WR
Sbjct: 970  -DIDENQKSPPVDYYVCAEALKISAISVPLATQIFVFPAMIWR 1011


>gi|327297344|ref|XP_003233366.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
 gi|326464672|gb|EGD90125.1| dicer-like protein 1 [Trichophyton rubrum CBS 118892]
          Length = 1519

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/259 (30%), Positives = 121/259 (46%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVERWADYSRLYSL 1219

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             N ++   S   +D  ++ +  + Y FK    L  A  H SY   + N    CYQRLEFL
Sbjct: 1220 PNYQTASASASEIDVANQIQSKLGYCFKYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1277

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1278 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQG 1337

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GAI++DS  + D
Sbjct: 1338 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAIFVDSNFNFD 1390

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + ++   E +SV
Sbjct: 1391 VVDDFFRKFIQHYFEDMSV 1409



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 98/412 (23%), Positives = 163/412 (39%), Gaps = 83/412 (20%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KLLA + AA E C +L + + LD       + FI+ 
Sbjct: 666  FICETILPEKSPI-RGCMGKSASRKLLAKQSAAFETCLLLRKNRLLD-------EYFIST 717

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    PV+ +   +      + +     K  A   +       +P  LYA  + L+    
Sbjct: 718  YHKRLPVM-RNARLAITSKKSNKYSMISKPAAWELSRG----ESPTILYATVLSLS---- 768

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
             +  K  R  HP       + +LT   +P   SFP++     +CG   + +E   K V+ 
Sbjct: 769  -DCQKLQRSYHP-------IVLLTRVPMPDFPSFPLYLEHNKKCGSCSIRVEEGLK-VIP 819

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----VSDSEQI----VI 267
             E  L     F   +F  V     +  +++ N S  SY I P     V+D ++     +I
Sbjct: 820  PELELLTKFTFR--VFEDV-----FHKIYEENSSLVSYLIAPAKLDGVTDIKKSNPVELI 872

Query: 268  DWKFMTLISEHHNDVIQ-DIPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVAE 323
            DW+ +  I E+   +   D+P +  EN F+ D  + ++R      ++  + +PT      
Sbjct: 873  DWQMLQYIQENEELLWSPDMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQDP 926

Query: 324  IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL----TPR 379
            +  NV  R    +  N   +  +    ++ +Q  N +QP+L  +    R NFL     P+
Sbjct: 927  VPENVARRRYMDNIMNYCLSLFKNSRARF-MQRCNWDQPVLRSELIQLRRNFLDIDENPK 985

Query: 380  ------YVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWR 425
                  YV  + + ++  S                 VP    I  FPA +WR
Sbjct: 986  SPPVDYYVCAEALKISAIS-----------------VPLATQIFVFPAMIWR 1020


>gi|357462179|ref|XP_003601371.1| Ribonuclease 3-like protein [Medicago truncatula]
 gi|355490419|gb|AES71622.1| Ribonuclease 3-like protein [Medicago truncatula]
          Length = 322

 Score =  108 bits (270), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 79/246 (32%), Positives = 126/246 (51%), Gaps = 15/246 (6%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            EE + Y FK+K  L +A+TH +Y      + Y+RLE++GDA+L+ L+ R  +       P
Sbjct: 73   EEILGYEFKNKQLLEEALTHTTY---GAENDYERLEYVGDAVLNLLMAREQFVSYPNLKP 129

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G LT LRS  V++   A +A+  G   + +H  P L E +   + +     FT   E Y 
Sbjct: 130  GILTQLRSKNVDSEKLARVAINHGLDRYLRHKKPQLGEQVSLGIGIGQIEAFTKAIEDYP 189

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPK 1162
            +         I VPK L D+ ES  GA+++D   SL+ VWKV+ ++++  IE    +V K
Sbjct: 190  IHSNG----HIHVPKDLADMVESTIGALFIDCDSSLEIVWKVFRKLLEPIIE--PNTVEK 243

Query: 1163 SPIRELLEL---EPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKC 1219
             P+ EL E+   +  N +F    + +    V +  +  G+G+Y   G    IA   AAK 
Sbjct: 244  HPVSELQEVCQKKKLNLQFVDLWEKSMNIDVFINEKFVGRGTY---GSKKDIAHYRAAKN 300

Query: 1220 ALKHLK 1225
            AL +++
Sbjct: 301  ALDNIE 306


>gi|340514590|gb|EGR44851.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1416

 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 110/426 (25%), Positives = 166/426 (38%), Gaps = 90/426 (21%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRS 817
            NT    +   DFQP +    G + +RLE +GD+FLK A TI ++  +P   E +    R 
Sbjct: 947  NTEEHGEHQVDFQPGM----GRNYERLEFLGDTFLKMATTISVFTLFPTADEFEYHVTRM 1002

Query: 818  KQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCL 877
              + N NLFK   +K                       +P Y+ T      F    W   
Sbjct: 1003 VMLCNQNLFKHAVEKG----------------------MPAYIRTK----AFDRRTW--- 1033

Query: 878  SLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937
              P+                        +M ++        ++H +  KSIAD  EALIG
Sbjct: 1034 -YPS------------------------NMTLKRGKAAKTESKHCLSHKSIADVCEALIG 1068

Query: 938  AYLIECGPRGALLFMSWLGLKV-------------IPPVTNPE--SKHLSDVLLDGFDKF 982
            A  +   P    + +  +   V                 T P+  S+  +       DK 
Sbjct: 1069 AAYMSSSPGDMDMAVKAVAAMVCSINHTMTSYKDYFATFTAPKWYSQQATAAQRLTVDKV 1128

Query: 983  EESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E   YRFK       A  H SY F N + D YQRLEFLGD +LD  I   L++      
Sbjct: 1129 AEITGYRFKAAPLARSAFRHPSYVFENNIRD-YQRLEFLGDGLLDMAIVDFLFKRFPEAD 1187

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            P  LT+ ++A+V+N     L V+LG H      +  L   I R+     + + T  Q   
Sbjct: 1188 PKWLTEHKTAMVSNQFLGCLCVKLGLHKHILLATSSLLGDIGRYAAQLEQAEETARQTLR 1247

Query: 1102 LMEGECDEAEDI---------EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
                   EAE I         + PK L D+ E++ GA+++DS  S   V   + + ++  
Sbjct: 1248 A------EAESIPQNFWVDVPQPPKVLADVVEALVGAMFVDSEYSFSVVLDFFTKFIQPY 1301

Query: 1153 IERLSV 1158
             E +++
Sbjct: 1302 FEDMAL 1307



 Score = 58.9 bits (141), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 105/451 (23%), Positives = 180/451 (39%), Gaps = 97/451 (21%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F   + LP  SP+K ++TG    +K LA   AA EAC  L + K +  +L P        
Sbjct: 563 FIARVVLPEGSPIK-TITGEAQQSKQLARCSAAFEACVRLIQKKYITGNLQPA------- 614

Query: 100 YENTEPVVPKTPEIET--YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCP 157
                    K PE+       S+ ++  Y  R+   F +       P  LY   + L   
Sbjct: 615 ------FAKKLPEMRNARLALSSDKKSEYDMRIKPDFWSSCLGPEPPTSLYQTVITL--- 665

Query: 158 IPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF--------TRCGEVEVSIELI 209
             D+ +  GR   P       L +LT K +P + S P++         R    + S E++
Sbjct: 666 --DQPDALGRASRP-------LILLTRKPLPDIPSAPLYFGSGRTSNVRLSNSQTSFEVL 716

Query: 210 DKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVID 268
              +   E   S TL     +F+K  + K +         E  YF+ P + +D E + ID
Sbjct: 717 PHQI---EALASFTLRLFADVFSKEYEAKTH---------ELPYFVAPGLPNDDEVVEID 764

Query: 269 WKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNV 328
           WK +  + E+ N   +D PEK      F E K     + PW  ++     + +  I  ++
Sbjct: 765 WKAVQFVHENENLEWKDAPEK------FFEDKL---AIDPWDGSR----KYILHGINPDM 811

Query: 329 HPRSMFPS-----RTNTYQTFE----EYY-SLKYGLQIQ---NLEQPLLDVDHTSCRLNF 375
            P    P      ++  Y+  E    EY  SL +  + +     +QP+++ +    R NF
Sbjct: 812 KPSDPTPEGVPQPKSLAYKRVEHNIKEYSNSLSFNSRKRINWTDDQPVVNAELLPIRRNF 871

Query: 376 LTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILY 435
           L   +V   G       + T   I E L    + +  + +           ++ LP ++Y
Sbjct: 872 LDEFFVTDDG-------DGTCYIILEPLRVSPIYIDAVAM-----------ALVLPVVMY 913

Query: 436 RLNALLLADE----IRTAVASEIGLGKVILD 462
           R++++L+A E    +   + S++ L  V  D
Sbjct: 914 RVDSVLIAQEACSLVGLTIRSDLALEAVTKD 944


>gi|385047858|gb|AFI39690.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  108 bits (269), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDN-DLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A   L+ELKELD+  L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIXLHELKELDDXHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEENSAAPQLNKENIAVYNRRLPGCFSNCRPLPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVITRAGEFXVNL 189


>gi|242078881|ref|XP_002444209.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
 gi|241940559|gb|EES13704.1| hypothetical protein SORBIDRAFT_07g015020 [Sorghum bicolor]
          Length = 291

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 82/249 (32%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 982  FEESINYRFKDKSYLLQAMTHAS-YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
             E  + Y F DKS +  A+TH S YF     D Y+RLE+LGD +L  L++R ++ + R  
Sbjct: 30   IEAVLGYEFADKSLVELALTHGSFYFPYRPGDTYERLEYLGDGVLTCLMSREVFRNYRTL 89

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
             PG LT LR+A V+    A +AV  G H F +H +P L + I  F++   +     N   
Sbjct: 90   PPGPLTRLRAANVDTEKLARVAVDRGLHRFLRHKAPKLQDQICLFIEEMRKYPVHSNGL- 148

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                        ++ PK L D+ ES+ GAIY DS  + + VW+V+  +    I   ++  
Sbjct: 149  ------------LDPPKVLCDIVESLIGAIYWDSDFNQEEVWRVFRTLADPLIGLETLG- 195

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTV----EVFGKGSYKGIGRNYCIAKCTA 1216
             K P+ EL E   +  R  K  K    + ++V V    E+    +Y   G    IA+  A
Sbjct: 196  -KHPVTELFEFCQKTRRGVKFVKDEWDKSLKVEVLIDGELVASATY---GPKKEIAQNRA 251

Query: 1217 AKCALKHLK 1225
            AK AL  LK
Sbjct: 252  AKAALDKLK 260


>gi|385047852|gb|AFI39687.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/170 (39%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A  +L+ELKEL DN L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIMLHELKELDDNHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEENSAAPQLNKENIAVYNRRLPXCFSNCRPLPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K+  P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLXFPFAVDTKLAILTSKVIPAICPFPVXTRAGEFLVNL 189


>gi|255953957|ref|XP_002567731.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211589442|emb|CAP95586.1| Pc21g06890 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1495

 Score =  108 bits (269), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 166/406 (40%), Gaps = 94/406 (23%)

Query: 769  FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
             Q  ++   G + +RLE +GDS LK A +I L+   P+  E      R   + N NLFK 
Sbjct: 1036 LQIHVQRGMGKNYERLELLGDSVLKMATSISLFAQNPDDDEYDYHVNRMCLICNKNLFK- 1094

Query: 829  GKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPE 888
                    + I  K               +Y+ +     GF   +W            P 
Sbjct: 1095 --------NAIELKLY-------------EYIRSR----GFSRHMW----------YPPG 1119

Query: 889  KVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP--- 945
              LE  +     +D                 +HS+ +K+IAD  EALIGA L+  G    
Sbjct: 1120 LSLEYGRDHAKFIDSE--------------GKHSLAEKTIADVCEALIGASLLSGGDDNR 1165

Query: 946  -----RGALLFM--------SW---LGLKVIPPVTNPESKHLSDVLLDGFDK-----FEE 984
                 +   +F+        SW   +    IP   N           DGF+K       E
Sbjct: 1166 YDMAIKAVTIFVNSQNHTATSWKDYISAYSIPLYQNRAP--------DGFEKNLARQIFE 1217

Query: 985  SINYRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
             + Y FK    L  A TH SY L      CYQRLEFLGDA+LD +   HL+       P 
Sbjct: 1218 KVGYDFKYPRLLRSAFTHPSYPLAWAKVPCYQRLEFLGDALLDMVCVEHLFHRFPNRDPQ 1277

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYY 1101
             LT+ + A+V+N    +LAV+LG H   +H S  L     ++ +    AE++     +Y+
Sbjct: 1278 WLTEHKMAMVSNKFLGALAVKLGLHLHLQHFSNPLMIQNSKYAEEIQLAESESNGEVDYW 1337

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
            L   +         PK L D+ E+  GAI++DSG    TV + +++
Sbjct: 1338 LSTSDS--------PKCLPDMLEAYLGAIFVDSGFDF-TVIEAFFQ 1374



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 103/441 (23%), Positives = 178/441 (40%), Gaps = 88/441 (19%)

Query: 27   ITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELD 86
            +T   + E++S  F+C I +P  SP++R V G   P K LA + AA +AC +L +   LD
Sbjct: 630  VTYIVMSENES--FSCEIIMPEKSPVRR-VLGCSEPKKSLAKQSAAFDACLLLRKRNLLD 686

Query: 87   NDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCY 146
                   + F ++Y    P +       T   S K  Q+  +   S +   R     P  
Sbjct: 687  -------EHFNSVYHKRLPAMRNAKLAIT---SKKTDQYRMRTKPSIWA--RQQGTIPTR 734

Query: 147  LYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
            LYA+ ++L   IP E         P   +   + +LT + I  + +FP+F    ++E ++
Sbjct: 735  LYAIVIRL---IPSE---------PLTRAHGSIVLLTRERIAAIPTFPVFLD-DDIETTV 781

Query: 207  E--LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSD--- 261
            +   ID  + ++ E L     F   +F  V   K Y  + +    +  Y++ P   D   
Sbjct: 782  QSLCIDGCLEVASEELETLTAFTLAVFHDVFH-KTYKHVTE----QFPYWLAPARGDVDI 836

Query: 262  ----SEQIVIDWKFMTLISEHHNDVIQ-DI-PEKERENFVFDE--SKFRDAVVMPWYRNQ 313
                S   +IDW  +  + ++   +   D+ PE     F++D+   K+R           
Sbjct: 837  RTSTSSFDMIDWDALQYVQDNPKLMWSTDMEPELLLTKFIYDDWNGKYR----------- 885

Query: 314  FEPTYFYVAEIMTNVHPR----SMFPSRTNTYQTFEEYYSLKYGLQIQNLE-----QPLL 364
                YF +A I  N+ P     S  PSR  +        SL    + +  +     QP+L
Sbjct: 886  ----YFPLA-IDPNLRPSDPPPSYAPSRKWSNDIMNWSLSLSKNSRPKFFDRCIWTQPVL 940

Query: 365  DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLW 424
              +    R NFL               +EE R     +   + ++ P+   I   P S+ 
Sbjct: 941  QAELICLRRNFLD------------KAAEEER-----ASNTRCVICPQPLAISAIPMSVA 983

Query: 425  RKSVSLPSILYRLNALLLADE 445
               +  P+I+ R+ + L+A E
Sbjct: 984  ATCLVFPAIISRMESYLIAQE 1004


>gi|212529276|ref|XP_002144795.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
 gi|210074193|gb|EEA28280.1| RNA helicase/RNAse III, putative [Talaromyces marneffei ATCC 18224]
          Length = 1497

 Score =  107 bits (268), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/256 (31%), Positives = 122/256 (47%), Gaps = 26/256 (10%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFM----------------SWLGLKVIPPVT 964
            H + +K+IAD  EALIGA L+  GP                       SW G      + 
Sbjct: 1137 HGLGEKTIADVCEALIGASLLSGGPVNRFDMAVKAVTRLVNSDLHNVESWAGYSSHYSLP 1196

Query: 965  NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDA 1023
            + + K  +    D  ++ ++ + YRFK    L  A TH SY    ++  CYQRLEFLGD+
Sbjct: 1197 SYQIKEANGFEKDLANQIDKKLGYRFKYPRLLRSAFTHPSYPTAWSIVPCYQRLEFLGDS 1256

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            +LD +   +LYE      P  LT+ + A+V+N    SLAVRL  H   ++ S  L   I 
Sbjct: 1257 LLDMVCIENLYERFPDRDPQWLTEHKMAMVSNKFLGSLAVRLDLHTHLQYFSNPLQGRIA 1316

Query: 1084 RFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
            + V+  Q   +   + ++++M       ED   PK L D+ E+  GAI++DSG     + 
Sbjct: 1317 QAVEDAQLAYESHQSVDFWIM------IED--PPKCLSDMVEAYLGAIFVDSGFDFGVIE 1368

Query: 1143 KVYYEIMKSEIERLSV 1158
              Y + +K   E +S+
Sbjct: 1369 SFYAKHIKPYFEDMSL 1384



 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 120/486 (24%), Positives = 195/486 (40%), Gaps = 101/486 (20%)

Query: 3    NAIFIVNRYCARLP-SDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            +AI ++ RY + L   +  T   P    ++IK     M+ C + LP  SP+ R + G   
Sbjct: 608  SAIMVLARYASSLQYENNETGSHPHYVTTQIKG----MYECEVILPKGSPI-RGLMGKPE 662

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            P K LA + AA E C +L     LDN+       F++ Y+   P +       T   S K
Sbjct: 663  PRKSLAKQSAAFETCILLRNNGLLDNN-------FVSTYQRRLPAMRNAKLSIT---SKK 712

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAI 181
              Q+      S +T     V  PC LY   + L    P E         P +N  + + +
Sbjct: 713  TTQYSMIVKPSFWTQACDGV--PCQLY---LTLIMFSPAE---------PLQNERRSMVL 758

Query: 182  LTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLS-----EENLSN-TLIFMDYLFTKVL 235
            LT K +P+   FPI+    +VE ++  I  +  LS      E +SN TL     L+ K+ 
Sbjct: 759  LTRKRLPQCPEFPIYLE-EDVETTVRTISVSKALSISPDDLELMSNFTLRIFQDLYNKIY 817

Query: 236  KLKKYLMLFDPNCSENSYFIVPTVSD----SEQI----VIDWKFMTLISEHHN-DVIQDI 286
            ++ + +M          Y+++PT SD     E I     IDW  +  + +H   D     
Sbjct: 818  EMNQEVM---------PYWLIPTASDIGEYGEGINPSDAIDWDVLQFVKDHERLDRNSVS 868

Query: 287  PEKERENFVFDESKFRDAVVMPW---YRNQFEPTYFYVAEIMTNVHPRSM----FPSRTN 339
            P+     FV+D          PW   YR       +++  I T++ P  +     P R  
Sbjct: 869  PQGLNGRFVYD----------PWDGKYR-------YFLRGINTSLRPSDLPPYFLPHRRY 911

Query: 340  TYQTFEEYYSLKYGLQIQNLE-----QPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEE 394
                 E   SL    +I  L      Q + D +    R N L           L+ + ++
Sbjct: 912  MENIMEYGLSLYKRSRIPFLAACDWGQDVYDAELIPLRRNLLD---------RLSNSEKQ 962

Query: 395  TRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
              R        + +L  E  +I   PA++     + P+I+ R+++ L+A E  + +  EI
Sbjct: 963  VER--------RMVLCLETQVISAIPATVAASCFAFPAIITRIDSYLVAHECASLLGLEI 1014

Query: 455  GLGKVI 460
             LG  +
Sbjct: 1015 QLGYAL 1020



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 1/84 (1%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   PN  E  L   R   + N NLF   
Sbjct: 1037 QIQFQRGMGKNYERLEFLGDCFLKMATSISLFVGSPNDQEFDLHVNRMTLICNRNLFNTA 1096

Query: 830  KQKVFGESMIATKFEPRDNWLPPG 853
            K++   E + +  F  R NW P G
Sbjct: 1097 KERKIYEYIRSKGFS-RRNWYPEG 1119


>gi|125555283|gb|EAZ00889.1| hypothetical protein OsI_22916 [Oryza sativa Indica Group]
          Length = 276

 Score =  107 bits (267), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/247 (33%), Positives = 121/247 (48%), Gaps = 21/247 (8%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDC-YQRLEFLGDAILDYLITRHLYEDERAHS 1041
            E  + Y F+DK+ + QA+TH S++        Y+RLE+LGDA+L  +++R ++       
Sbjct: 43   ESLLGYEFRDKALVEQALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQ 102

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            PG LT LR+A V+    A +AV  G HHF +H +P L   I  F++  +      N    
Sbjct: 103  PGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSN---- 158

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
               G  D       PK L D+ ES+ GAIY DS  + + VW+V+ ++    I   ++   
Sbjct: 159  ---GLLDP------PKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLG-- 207

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG---IGRNYCIAKCTAAK 1218
            K P+ EL E   +  R  K  K  D     +TVEV   G   G     +   IA+  AAK
Sbjct: 208  KHPVSELFEFCQKTRRGVKIVK--DEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAK 265

Query: 1219 CALKHLK 1225
             AL  LK
Sbjct: 266  AALDKLK 272


>gi|242215871|ref|XP_002473747.1| predicted protein [Postia placenta Mad-698-R]
 gi|220727142|gb|EED81071.1| predicted protein [Postia placenta Mad-698-R]
          Length = 1725

 Score =  107 bits (267), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 86/258 (33%), Positives = 125/258 (48%), Gaps = 30/258 (11%)

Query: 924  PDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDG----- 978
            P +S+ DC+EA +GA     G   AL   + LGL +  P+         D+   G     
Sbjct: 1058 PRRSLQDCMEATLGAAFTTGGMGMALRAGTALGLSLGGPLP-------WDIRYGGCIPKS 1110

Query: 979  -----FDKFEESINYRFKDKSYLLQAMTHASYFLNTL-TDCYQRLEFLGDAILDYLITRH 1032
                 F   +ES+ YRF+    LL+AMTH S+  N+  T  YQRLEFLGDA++D  + R+
Sbjct: 1111 PVSALFTLLQESLGYRFRSGRLLLEAMTHPSF--NSFETSSYQRLEFLGDAVVDLAVMRY 1168

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
            LY      + G L+  RS  V     AS+AV RLG H      +  L   I  +V +  E
Sbjct: 1169 LYNKFPQATSGQLSWARSRAVCAPSLASVAVKRLGLHKLLLVNNVELSIAINNYVPILEE 1228

Query: 1092 NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151
                L+ E  +       A   + PKA+ D+ ESV GA+ +DS  + +    V   +M  
Sbjct: 1229 ----LSNEELI-----HNAWKQDPPKAISDVMESVLGAVLVDSDYNWEIACSVSEMVMGD 1279

Query: 1152 EIERLSVSVPKSPIRELL 1169
             +  LS ++P+ PI EL+
Sbjct: 1280 LLVVLSPNLPRDPISELM 1297



 Score = 47.4 bits (111), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 23/56 (41%), Positives = 32/56 (57%)

Query: 776  HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + G + +RLET+GDS LK    + L+  +P  HEG+L  LR   VSN  L    K+
Sbjct: 961  NAGFNNQRLETLGDSVLKLTTVVHLFNRFPFRHEGQLDTLRRNSVSNRTLLARAKE 1016


>gi|385047862|gb|AFI39692.1| dicer 2, partial [Daphnia parvula]
          Length = 200

 Score =  107 bits (266), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 66/170 (38%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A   L+E KEL DN L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIXLHEXKELDDNHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEENSAAPQLNKENXAXYNRRLPGCFSNCRPLPGQPCFVYAIDFTLXK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVXTRAGEFXVNL 189


>gi|350630584|gb|EHA18956.1| hypothetical protein ASPNIDRAFT_42773 [Aspergillus niger ATCC 1015]
          Length = 1498

 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 108/431 (25%), Positives = 172/431 (39%), Gaps = 107/431 (24%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1025 QIHVQRGMGRNYERLEFLGDCFLKMATSISLFTQNPDDDEFDYHVNRMCLICNKNLFNAA 1084

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
              K   + + +  F  R  W P G                       L L   K+ S + 
Sbjct: 1085 VDKEIYKYIRSRGFS-RHTWYPEG-----------------------LKLLQGKDHSRKA 1120

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              E                          ++H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1121 TTE--------------------------SKHALAEKTIADVCEALIGAALLSGGPDHRF 1154

Query: 950  LFMSWLGLKVIPPVTNPES---KHLSDVL------------LDGFD-----KFEESINYR 989
                 + +K +  + N  S   +   D +             DG +     K EE ++YR
Sbjct: 1155 D----MAVKAVTTLVNSPSHKAERWKDYISFYTIPKYQRRAADGAELYLSRKLEEKLSYR 1210

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            F+  + L  A TH SY        CYQRLEFLGD+++D +    L+       P  LT+ 
Sbjct: 1211 FRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRDPQWLTEH 1270

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            + A+V+N    +LAV+LG H   K+ S  L   I ++            +E    EGE +
Sbjct: 1271 KMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYA-----------EEIQTAEGESE 1319

Query: 1109 EAED----------IEVPKALG-----------DLFESVAGAIYLDSGMSLDTVWKVYYE 1147
             A D          +  P AL            D+ E+  GA+++DS  + + + + + +
Sbjct: 1320 GAVDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIERFFRD 1379

Query: 1148 IMKSEIERLSV 1158
             +K   E +++
Sbjct: 1380 YIKPFFEDMAI 1390


>gi|195624966|gb|ACG34313.1| endoribonuclease Dicer [Zea mays]
          Length = 329

 Score =  107 bits (266), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/249 (33%), Positives = 121/249 (48%), Gaps = 23/249 (9%)

Query: 982  FEESINYRFKDKSYLLQAMTHAS-YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
             E  + Y F DKS +  A+TH S Y+ N   D Y+RLE+LGD +L  L++R ++   R  
Sbjct: 51   IEALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTL 110

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
             PG LT LR+A V+    A +AV  G + F +H +P L + I  F++   +     N   
Sbjct: 111  QPGPLTRLRAANVDTEKLARVAVHRGLYRFLRHKAPKLQDQICFFIEEMRKYPVHSNGL- 169

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                        ++ PK L D+ ES+ GAIYLDS    + VW+V+  +    I   ++  
Sbjct: 170  ------------LDPPKVLCDIVESLIGAIYLDSNFDQEEVWRVFRTLADPLIGLETLG- 216

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTV----EVFGKGSYKGIGRNYCIAKCTA 1216
             K P+ EL E   +  R  K  K    + ++V V    EV G   Y   G    IA+  A
Sbjct: 217  -KHPVSELFEFCQKTHRGVKFLKDEWDKSLKVQVLIDGEVVGSAIY---GPKKEIAQNRA 272

Query: 1217 AKCALKHLK 1225
            AK AL  LK
Sbjct: 273  AKDALDKLK 281


>gi|356552945|ref|XP_003544820.1| PREDICTED: ribonuclease 3-like protein 2-like [Glycine max]
          Length = 345

 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 76/254 (29%), Positives = 126/254 (49%), Gaps = 18/254 (7%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             ++ E  + YRF++K  L +A+TH+S FL+ ++  Y+RLEF+GD +L   I+ +L+    
Sbjct: 6    LEEVENILRYRFRNKKLLEEALTHSS-FLDGVS--YERLEFVGDPVLSLAISNYLFLAYP 62

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
               PG L+ LR+A V+    A +AVR+G H F +H +P L + ++RFV            
Sbjct: 63   DLDPGQLSALRAANVSTEKLARVAVRIGLHRFVRHSAPPLVDKVERFV-----------D 111

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
               L          ++ PK L D+ ESVA AIY+D    L T+W +   +++  +   ++
Sbjct: 112  AVKLEINPVAHGGSVKAPKVLADVVESVAAAIYVDVNFDLQTLWVIMRGVLEPIVTPDAL 171

Query: 1159 SVPKSPIRELLELEPENARFS--KPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
                 P+  L E+  +  +    KP +  D    +V V+     S     +++  AK  A
Sbjct: 172  EKQPQPVTMLYEMCQKKGKQVDIKPSREGDLSVAKVFVDGEFVASASSSQKDH--AKLEA 229

Query: 1217 AKCALKHLKSAKPA 1230
            AK AL  L    P+
Sbjct: 230  AKIALGKLAHLVPS 243



 Score = 44.7 bits (104), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 21/52 (40%), Positives = 32/52 (61%)

Query: 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           G S +RLE +GD  L  AI+ +L+  YP++  G+LS LR+  VS   L ++ 
Sbjct: 35  GVSYERLEFVGDPVLSLAISNYLFLAYPDLDPGQLSALRAANVSTEKLARVA 86


>gi|385047856|gb|AFI39689.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 94/170 (55%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDN-DLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A  +L+ELKELD+  L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIMLHELKELDDXHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +       P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEXNSAAPQLNKENIAVYNRRLPGCFSNCRPLPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVITRAGEFXVNL 189


>gi|115468004|ref|NP_001057601.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|75254269|sp|Q69KJ0.1|RTL3_ORYSJ RecName: Full=Ribonuclease 3-like protein 3; AltName:
            Full=Ribonuclease III-like protein 3; Short=RNase
            III-like protein 3
 gi|51091751|dbj|BAD36550.1| CAF protein-like [Oryza sativa Japonica Group]
 gi|113595641|dbj|BAF19515.1| Os06g0358800 [Oryza sativa Japonica Group]
 gi|125597181|gb|EAZ36961.1| hypothetical protein OsJ_21299 [Oryza sativa Japonica Group]
          Length = 299

 Score =  106 bits (265), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/247 (33%), Positives = 121/247 (48%), Gaps = 21/247 (8%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDC-YQRLEFLGDAILDYLITRHLYEDERAHS 1041
            E  + Y F+DK+ + +A+TH S++        Y+RLE+LGDA+L  +++R ++       
Sbjct: 43   ESLLGYEFRDKALVEEALTHGSFYYPYRPGVTYERLEYLGDAVLTCVVSREVFLTYGQLQ 102

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
            PG LT LR+A V+    A +AV  G HHF +H +P L   I  F++  +      N    
Sbjct: 103  PGPLTRLRAANVDKEKLARVAVVHGLHHFLRHKAPNLDGQITDFIEELSMYPIHSN---- 158

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
               G  D       PK L D+ ES+ GAIY DS  + + VW+V+ ++    I   ++   
Sbjct: 159  ---GLLDP------PKVLCDVVESLIGAIYCDSNFNQEIVWQVFQKLADPLISLETLG-- 207

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG---IGRNYCIAKCTAAK 1218
            K P+ EL E   +  R  K  K  D     +TVEV   G   G     +   IA+  AAK
Sbjct: 208  KHPVSELFEFCQKTRRGVKIVK--DEWDKNLTVEVLIDGEMVGRATYAQKKEIAQNRAAK 265

Query: 1219 CALKHLK 1225
             AL  LK
Sbjct: 266  AALDKLK 272


>gi|449550119|gb|EMD41084.1| hypothetical protein CERSUDRAFT_131598, partial [Ceriporiopsis
            subvermispora B]
          Length = 1587

 Score =  106 bits (265), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 88/270 (32%), Positives = 126/270 (46%), Gaps = 26/270 (9%)

Query: 925  DKSIADCVEALIGAYLIECGPRGALLFMSWL--GLKVIPPVTN-----------PESKHL 971
            DK  AD VEA+IGA  +  G   AL     L  G+  I   ++           P S   
Sbjct: 1225 DKVCADVVEAIIGAAYLSGGQEVALRAAKVLNVGMTDIEQWSDFARRATFITDPPASTRT 1284

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
                L+     E  +  RF+    LLQA+THAS     + + Y RLEFLGDAILD+L+ R
Sbjct: 1285 HRGFLEMLRAVEGIVGCRFEKPHLLLQALTHASIRGYEVLN-YDRLEFLGDAILDFLVIR 1343

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
            ++YE     S G LT L+ A+V+N + A+  V  G   +  H SP     IQ + + +  
Sbjct: 1344 YVYERHHNLSSGGLTLLKVAMVSNHVLAAFCVYCGLWQYALHASPDYAIAIQAYYE-RIN 1402

Query: 1092 NDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAIYLDSGMS-------LDTVW 1142
            N     +     EG        D E PK L D+ E+V GA+Y+  G S        D V+
Sbjct: 1403 NSRAQEERLAASEGRLPGQYWHDTEPPKILSDVVEAVLGALYVSDGFSEANIVNFFDNVF 1462

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLELE 1172
            + +Y+     ++ LS   PK  + EL++ E
Sbjct: 1463 RPFYD-RHIRLQTLSQH-PKKTLFELMQAE 1490



 Score = 43.1 bits (100), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 29/101 (28%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 752  EHGIIRNTSTPS-DFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEG 810
            EH ++     PS D  FD++            RLE +GD++LKY  + + + T P  +EG
Sbjct: 965  EHHLLPALFPPSADAEFDYE------------RLEFLGDAYLKYLSSTYCFVTMPRKNEG 1012

Query: 811  KLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLP 851
             L + R + +SN  L + G  ++   S + +K      W P
Sbjct: 1013 ALHYARQRYISNKAL-RTGSVRLGLPSYVQSKAFVAKLWTP 1052



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 117/490 (23%), Positives = 190/490 (38%), Gaps = 109/490 (22%)

Query: 3   NAIFIVNRYCARL-------PSDIFTRLAPIITI-SEIKEDDSIMFTCSIRLPINSPLKR 54
           +A+ +V R  A L       P  +F     ++T+ SE+  D S +F C++ LP +  L  
Sbjct: 528 DAMSVVYRLAASLQKTEEFVPRPLFA----LVTLQSEL--DGSPLFRCTVHLPESPSLPL 581

Query: 55  S-VTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMP-------------VTKEFINLY 100
           + VTG    T   A + A    C+ L +   LD  L P             ++ +  N  
Sbjct: 582 APVTGPPCTTVSEARKAACFCLCKELADKGVLDYHLYPQSPFPETTDSNSLLSGDTANTD 641

Query: 101 E--NTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPI 158
           E   TE     +P    YP   KR  F+            P++  P  L           
Sbjct: 642 EATKTEAAAVASPATHCYP--RKRPDFWVNSSPVFHGRLYPTIVAPGTLL---------- 689

Query: 159 PDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI---------FTRCGEVEVSIELI 209
                    + H P      + ++T   +P++ SF +         F R   VEV  E +
Sbjct: 690 --------DQYHAP------MLVMTRLPLPELSSFNVWSLHSAPVHFKRAAPVEVDEEKL 735

Query: 210 DK----NVVL----SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSD 261
           D      + L    + +  + T   M Y +  + K       +D    ++ +F  P+V++
Sbjct: 736 DALRGYTIRLCRLHTNKPFTCTAESMPYFYAPLAKT------WDQAEHQHEHF--PSVAE 787

Query: 262 SEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYV 321
                I W  + L +E H   +  IPEK  E  + +     DAV+      +F   YF V
Sbjct: 788 H----IPWDDVRLAAERHITPLL-IPEKPVEQCLAE--GVPDAVIQDRMV-EFTLRYFTV 839

Query: 322 AEIMTNVHPRSMFPS--RTNTYQTFEEY-YSLKYGLQ--IQNLEQPLLDVDHTSCRLNFL 376
           A I  ++ P S      R   Y +F EY  + K+G +  + + + P++ V      +N L
Sbjct: 840 A-IRPDLTPLSEKHDSLREQPYGSFFEYCKARKHGFEGWLAHPDAPMVQVTPAPPLVNNL 898

Query: 377 TPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYR 436
            P  V      LA T               + L+PELC     PAS +R ++ LP I+ R
Sbjct: 899 NP-VVKPPTYPLAKT-------------PAKYLIPELCHRLTIPASSYRTTLLLPCIMRR 944

Query: 437 LNALLLADEI 446
           ++  LL  E+
Sbjct: 945 IDDQLLIKEL 954


>gi|195996297|ref|XP_002108017.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
 gi|190588793|gb|EDV28815.1| hypothetical protein TRIADDRAFT_52064 [Trichoplax adhaerens]
          Length = 707

 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 64/378 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD +L Y IT+     +P+    ++ +       N  LF+LG  +     ++  
Sbjct: 285  ERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKLFRLGAGRRIPYYIVGC 344

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F    +W+PPG+                                      +I Q   +L
Sbjct: 345  PFNQNKSWVPPGF--------------------------------------VINQTVSEL 366

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                     S+      T   +  K+IADCVE LIG   + CG    L FM WLG ++  
Sbjct: 367  ---------SIAMSREYTHQPLTKKAIADCVEGLIGYLCLVCGRNSVLRFMRWLGFEISE 417

Query: 962  PVTN-----PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF-LNTLTDCYQ 1015
             +       P     +++  +  +  E  +NY F+++S L+ A+TH SY  L +++  Y+
Sbjct: 418  CLDGIQELIPSIDFRTNLYSETANSVETILNYSFRNRSLLMLALTHKSYSGLESIS--YE 475

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            +L FLGD +L Y I   LY     + P     L   L  N ++  +A+      F  H S
Sbjct: 476  KLAFLGDTLLIYQICLFLYTQYTDYQPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKS 535

Query: 1076 PGLH-EVIQRFVKMQAENDFTLNQ------EYYLMEGECDEAEDIE--VPKALGDLFESV 1126
              L  ++ + +  ++A++  + +        Y +      E   IE  VPK LGD F +V
Sbjct: 536  RELTLQIDEIYQALEADDVQSFSSTVQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAV 595

Query: 1127 AGAIYLDSGMSLDTVWKV 1144
              A++LD+    DT  ++
Sbjct: 596  VAAVFLDNYPDEDTAGRI 613



 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 57/216 (26%), Positives = 104/216 (48%), Gaps = 13/216 (6%)

Query: 244 FDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRD 303
           FD       Y +VP +    +  +D++ + L  +  + +   +     +  +    ++ +
Sbjct: 50  FDALNGLKKYLLVPILRSDSRYDLDFEVLNLFCKEEHKLY--VTPASHDYII----QYEN 103

Query: 304 AVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPL 363
           A+V   YR      +F+V+ + +++ P S F +  +   T+ EYY +KY + IQ+  QPL
Sbjct: 104 AMVARNYRGLDTLEWFFVSNVCSDMSPSSKF-TNPDVASTYSEYYKIKYDIDIQDANQPL 162

Query: 364 LDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASL 423
           L+V     R   +    +N K     + + + R     S     +L+PELCLIH  PA L
Sbjct: 163 LEV----ARFKKMHITLLNAK--QSGSITHDIRTLSVNSNSNSIVLIPELCLIHVIPAEL 216

Query: 424 WRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV 459
           W  S  L  +LYR+ ++LLA E+R  + S+  +  +
Sbjct: 217 WFLSQYLALVLYRVESILLAFELRELLRSQANICDI 252


>gi|261198280|ref|XP_002625542.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
 gi|239595505|gb|EEQ78086.1| dicer-like protein [Ajellomyces dermatitidis SLH14081]
          Length = 1522

 Score =  106 bits (264), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 52/347 (14%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            +HS+ DK+IAD  EALIGA L+  G   A  F S   +K +    N +    S+      
Sbjct: 1160 KHSLGDKTIADICEALIGASLLSGGK--AHRFDS--AVKAVTTFVNSDDHRASEWNCYVN 1215

Query: 974  --------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLE 1018
                            LD   +  + + Y+F+    L  A THAS+    +   CYQRLE
Sbjct: 1216 LYSLPDYQIAQADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLE 1275

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
            FLGD++LD +   +LY       P  LT+ + A+V+N    ++AV+LG H    + S  L
Sbjct: 1276 FLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNAL 1335

Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLD 1133
               I R+V           +E  L E + + + D      + PK L D+ E+  GAI++D
Sbjct: 1336 LGQITRYV-----------EEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1384

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF---SKPEKL 1184
            S    + V   + + +K   E +S+        P +     L ++     +   +   ++
Sbjct: 1385 SNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTYFHNRLTIDFGCTSYCLKAGEVQM 1444

Query: 1185 ADGRRVRVTVEVFGKGSY--KGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             DG   RV   V     +  +GI  +   AK  A++ AL  L+   P
Sbjct: 1445 VDGTEPRVYAAVIVHDEFVAEGIASSVRYAKIKASEAALAKLEGLAP 1491


>gi|327355811|gb|EGE84668.1| hypothetical protein BDDG_07613 [Ajellomyces dermatitidis ATCC 18188]
          Length = 1509

 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 52/347 (14%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            +HS+ DK+IAD  EALIGA L+  G   A  F S   +K +    N +    S+      
Sbjct: 1147 KHSLGDKTIADICEALIGASLLSGGK--AHRFDS--AVKAVTTFVNSDDHRASEWNCYVN 1202

Query: 974  --------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLE 1018
                            LD   +  + + Y+F+    L  A THAS+    +   CYQRLE
Sbjct: 1203 LYSLPDYQIAQADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLE 1262

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
            FLGD++LD +   +LY       P  LT+ + A+V+N    ++AV+LG H    + S  L
Sbjct: 1263 FLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNAL 1322

Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLD 1133
               I R+V           +E  L E + + + D      + PK L D+ E+  GAI++D
Sbjct: 1323 LGQITRYV-----------EEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1371

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF---SKPEKL 1184
            S    + V   + + +K   E +S+        P +     L ++     +   +   ++
Sbjct: 1372 SNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTYFHNRLTIDFGCTSYCLKAGEVQM 1431

Query: 1185 ADGRRVRVTVEVFGKGSY--KGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             DG   RV   V     +  +GI  +   AK  A++ AL  L+   P
Sbjct: 1432 VDGTEPRVYAAVIVHDEFVAEGIASSVRYAKIKASEAALAKLEGLAP 1478


>gi|426198231|gb|EKV48157.1| hypothetical protein AGABI2DRAFT_202619 [Agaricus bisporus var.
            bisporus H97]
          Length = 1179

 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 107/409 (26%), Positives = 177/409 (43%), Gaps = 65/409 (15%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA- 840
            +RLE +GD+ LKY  T +++    N  EG+L   R + +SN  L  +    V G  +   
Sbjct: 806  ERLELLGDALLKYLSTTYVFVQNLNGTEGELHTARQRFISNRQLCDI----VSGWGLPGY 861

Query: 841  TKFEPRD--NWLPPGYFVPKYLETALIEAGF--PASLWNCLSLPNLKELSPEKVLEIIKQ 896
             + +P +  +WLPPG  +    + + +  G      L    + PN   +   K       
Sbjct: 862  IQLKPFNIKSWLPPGMTIDDRQKESTVGGGVVDDGHLDMRPAQPNEDRIGASK------- 914

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL- 955
                               N  T   I +K++AD  EA+IGA  I  G   AL     L 
Sbjct: 915  ----------RPKNKKRRLNKKTLSPIANKTVADVAEAIIGAAYISGGRDSALKATKALM 964

Query: 956  ------------GLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHA 1003
                        G K   P    ++ H  +  +  F   E    +RF+  S L   +T  
Sbjct: 965  IPFADVEEWADFGRKASAP--RHDTGHAPEPSVMHF--IETITGFRFQQPSLLRLTLTQN 1020

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            S  +      +QRLEFLGDA+LD+L+ R+LY+ +   SPG L+ ++S +V+N I A++ V
Sbjct: 1021 SMEMKD----HQRLEFLGDAVLDFLVVRYLYDKDEHASPGELSVMKSLMVSNSILAAICV 1076

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKM----QAENDFTLNQE-----YYLMEGECDEAEDIE 1114
              G H F  H+     +V+  + K     +A    + ++E     Y+ M        D++
Sbjct: 1077 WSGLHRFV-HVRQQQKQVVWDYEKALRGREAAETASTSKEAARVTYFWM--------DLD 1127

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
            VPK L D+ ES+ GA Y+    S   V  ++ +++    ++   + P +
Sbjct: 1128 VPKVLSDVIESIIGAAYISDDFSQAGVEVIFDQMLLPFYQKFVFTKPDA 1176


>gi|239607869|gb|EEQ84856.1| dicer-like protein [Ajellomyces dermatitidis ER-3]
          Length = 1522

 Score =  106 bits (264), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 151/347 (43%), Gaps = 52/347 (14%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            +HS+ DK+IAD  EALIGA L+  G   A  F S   +K +    N +    S+      
Sbjct: 1160 KHSLGDKTIADICEALIGASLLSGGK--AHRFDS--AVKAVTTFVNSDDHRASEWNCYVN 1215

Query: 974  --------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLE 1018
                            LD   +  + + Y+F+    L  A THAS+    +   CYQRLE
Sbjct: 1216 LYSLPDYQIAQADAGQLDLAKQIGDRLGYQFRYPRLLRSAFTHASFPSAWSRVPCYQRLE 1275

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
            FLGD++LD +   +LY       P  LT+ + A+V+N    ++AV+LG H    + S  L
Sbjct: 1276 FLGDSLLDMVCVEYLYHRYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHRHLIYFSNAL 1335

Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLD 1133
               I R+V           +E  L E + + + D      + PK L D+ E+  GAI++D
Sbjct: 1336 LGQITRYV-----------EEIELAEADSNNSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1384

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF---SKPEKL 1184
            S    + V   + + +K   E +S+        P +     L ++     +   +   ++
Sbjct: 1385 SNFKFEVVEDFFQQHLKQYFEDMSIYDTFANKHPTTYFHNRLTIDFGCTSYCLKAGEVQM 1444

Query: 1185 ADGRRVRVTVEVFGKGSY--KGIGRNYCIAKCTAAKCALKHLKSAKP 1229
             DG   RV   V     +  +GI  +   AK  A++ AL  L+   P
Sbjct: 1445 VDGTEPRVYAAVIVHDEFVAEGIASSVRYAKIKASEAALAKLEGLAP 1491


>gi|328849595|gb|EGF98772.1| hypothetical protein MELLADRAFT_79606 [Melampsora larici-populina
            98AG31]
          Length = 1540

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 175/404 (43%), Gaps = 85/404 (21%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GD+FLK A ++ +Y ++    EG +S LRSK V                       
Sbjct: 957  LETVGDAFLKLATSVHVYLSHTKKGEGDMSALRSKSV----------------------- 993

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
               DN         +YL +  ++AG  + +           LS     +  +        
Sbjct: 994  ---DN---------EYLRSKSLQAGLGSYV-----------LSSRYRTDTFR-------- 1022

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL--KVIP 961
               ++   ++P   V Q  IP + ++D VEAL+GA L+  G + AL   + L L    + 
Sbjct: 1023 AAHLDDGPLLPTGEV-QRKIPRRVLSDIVEALLGAGLLSGGIQTALKIGTELDLCFGGVT 1081

Query: 962  PVTNPESKHLSDVLLDGFDK--------FEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            P T    K L +   D             +  I Y FK    L+QA+TH S   + LT+C
Sbjct: 1082 PWTERPCKALDEPYPDAASSQWTKSHTALQHKIGYEFKQPLLLMQALTHRSAD-SFLTNC 1140

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFK 1072
            Y+R E+LGDAI+D  IT H Y      +   LT  R++LV N     L++ +LG H   +
Sbjct: 1141 YEREEWLGDAIVDLWITEHCYRRFSDSTAAQLTFTRASLVTNASLGYLSLKKLGLHKMIQ 1200

Query: 1073 HLSPGLHEV-------IQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFES 1125
            H S    +        I+ F+++ +  D  L   + + +           PK LGD  E+
Sbjct: 1201 HDSRHFEKACDDALRDIESFIEVGSFYD-NLTNSFIVFDP----------PKILGDALEA 1249

Query: 1126 VAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            + GAI++D G+ L   ++   +I +  + RL    P+ PI  LL
Sbjct: 1250 IVGAIFIDCGLHLSVAYRSLDKIFEDVLPRLKQDEPRDPISLLL 1293


>gi|358383044|gb|EHK20713.1| hypothetical protein TRIVIDRAFT_171147, partial [Trichoderma virens
            Gv29-8]
          Length = 1373

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 166/435 (38%), Gaps = 95/435 (21%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRS 817
            NT    +   DFQP +    G + +RLE +GD+FLK A TI +Y   P+  E      R 
Sbjct: 896  NTEEHGEHQIDFQPGM----GKNYERLEFLGDTFLKMATTISVYTIAPDADEFHYHVGRM 951

Query: 818  KQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCL 877
              + N NLF+   +K                       +P Y+ T      F    W   
Sbjct: 952  MMLCNKNLFEHAVEKG----------------------MPAYIRTK----AFDRRTW--- 982

Query: 878  SLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937
              P+                        +M ++        T+H +  KSIAD  EALIG
Sbjct: 983  -YPS------------------------NMTLKRGKAARTETKHCLSHKSIADVCEALIG 1017

Query: 938  AYLIE-----------------CGPRGALL-FMSWLGLKVIPPVTNPESKHLSDVLLDGF 979
            A  +                  C     +L +  +     +P        H+S       
Sbjct: 1018 AAYMTSTTENMDMAVKAVTAMVCSEHHTMLEYKDYFATFQVP---KWHGNHVSAAQRLTV 1074

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            DK  E   YRF+       A  H SY   T    YQ+LEFLGD +LD  +   L++    
Sbjct: 1075 DKVAEITGYRFQCAPLARSAFRHPSYVFETNIPDYQQLEFLGDGLLDMAVVDFLFKRFPE 1134

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM--QAE---NDF 1094
              P  LT+ ++A+V+N     L V+LG H      +  L   I R+     QAE      
Sbjct: 1135 ADPKWLTEHKTAMVSNQFLGCLCVKLGLHKHILLATSALLGDIGRYATQLEQAEEIARQK 1194

Query: 1095 TLNQEYYLMEGECDEAED--------IEV---PKALGDLFESVAGAIYLDSGMSLDTVWK 1143
            +   +     G C +A          IEV   PKAL D+ E++ GA+++DSG S   V  
Sbjct: 1195 SQGGDLGYTSGGCFQAGAQPTPQDFWIEVPQPPKALADVVEALVGAMFVDSGYSFSVVLN 1254

Query: 1144 VYYEIMKSEIERLSV 1158
             + + ++   E +++
Sbjct: 1255 FFTKFIQPFFEDMAL 1269



 Score = 43.9 bits (102), Expect = 0.62,   Method: Compositional matrix adjust.
 Identities = 98/482 (20%), Positives = 187/482 (38%), Gaps = 94/482 (19%)

Query: 7   IVNRYCARLPSDIFTRLAPI-ITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKL 65
           ++ +Y +  P++    L P+   ++ I +     F   + LP  SP+K    G    +K 
Sbjct: 480 VLAKYASSFPNNAIDGLLPLEYIVTSIGKK----FVARVILPDASPIKM-FPGEVQKSKQ 534

Query: 66  LAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQF 125
           LA   AA EAC  L   K ++ +L P   + +    N    +           S+ ++  
Sbjct: 535 LARCSAAFEACVHLIGKKYINGNLQPAFTKKLPDMRNARLAL-----------SSDKKSE 583

Query: 126 YHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTK 185
           Y  R+   F +   +   P  LY   + L     D+    GR   P       L +LT K
Sbjct: 584 YDMRIKPDFWSSCLAPEPPTSLYQTIIAL-----DQPEALGRASRP-------LILLTRK 631

Query: 186 YIPKVCSFPIFTRCGEVEV--------SIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
            +P + S P+F   G+  +        S E++   +   E   S TL     +F+K    
Sbjct: 632 PLPDIPSTPLFFGGGQTSIMRLSNSQTSFEVLPHEI---EALASFTLRLFADVFSKE--- 685

Query: 238 KKYLMLFDPNCSENSYFIVPTV---SDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENF 294
                 +D    E  YF+ P+    S  +   IDW+ +    ++     ++ P +     
Sbjct: 686 ------YDAKSHEIPYFVAPSKLSPSRGDDAEIDWEAVQYAHDNEQLRWENAPSE----- 734

Query: 295 VFDESKFRDAVVM-PWYRNQFEPTYFYVAEIM-TNVHPRSMFPSRTNTYQTFEEY---YS 349
                 F+D +   PW  ++    +   AE+  ++  P+ +   ++  Y+  E+    YS
Sbjct: 735 -----FFKDKLATDPWDGSRKFILHGINAELKPSDPTPKGVPQPKSLGYRKVEQNIKEYS 789

Query: 350 LKYGLQIQNL-----EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLG 404
               ++ +       +QP+++ +    R NFL   +V+ +         E  R       
Sbjct: 790 NSLSIKSRQRRNWRNDQPVVNAELLPIRRNFLDEFFVDDECDGTCYVILEPLR------- 842

Query: 405 KKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRT----AVASEIGLGKVI 460
                      + P P  +   ++ LP ++YR++++L+A E  +    A+ S++ L  V 
Sbjct: 843 -----------VSPIPVDVVSIALVLPVVIYRVDSVLIALETCSLFDLAICSDLALEAVT 891

Query: 461 LD 462
            D
Sbjct: 892 KD 893


>gi|385047854|gb|AFI39688.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 93/170 (54%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDND-LMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A   L+ELKELD+  L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIXLHELKELDDKHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +       P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEXNSAAPQLNKENIAVYNRRLPGCFSNCRPLPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAILT+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAICPFPVITRAGEFXVNL 189


>gi|328772805|gb|EGF82843.1| hypothetical protein BATDEDRAFT_23044 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1492

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 78/239 (32%), Positives = 124/239 (51%), Gaps = 21/239 (8%)

Query: 919  TQHSIPDKSIADCVEALIGAYLIECGPRGA------LL---FMSWLGLKVIPPVT--NPE 967
            +  S+P K +AD  EA+IG  LI+ G  GA      LL   + S  GL         N  
Sbjct: 1145 SMQSMPKKILADVTEAIIGGCLIDGGIVGASEAVRSLLNRDYQSEWGLYFTQYQLHRNVT 1204

Query: 968  SKHLSDVLLDGFD-----KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGD 1022
              HL   + D  D     + E  +NY F+DKS L +A+TH+S   +     YQRLEFLGD
Sbjct: 1205 PSHLVRFIGD-IDSLVTLRIEAVLNYTFQDKSILWEALTHSSSSFSICGLNYQRLEFLGD 1263

Query: 1023 AILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVI 1082
            A+L ++IT++LY    + SPG ++ L+S +V N   A +++RLG   + +        ++
Sbjct: 1264 AVLSFIITKYLYTQLGSSSPGVISHLKSEMVCNQFLACVSIRLGLIDWLRVKKSDTVWIV 1323

Query: 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
              + +   E+   L+Q    ++ +   A     PK  GD++E++ GAI++DS  S++ V
Sbjct: 1324 DAYAQQVIEH---LSQPADSIQ-KIFWAHMTTAPKICGDVYEAILGAIFVDSKFSIEKV 1378



 Score = 41.6 bits (96), Expect = 3.0,   Method: Compositional matrix adjust.
 Identities = 24/74 (32%), Positives = 37/74 (50%), Gaps = 1/74 (1%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLE +GDSFLK   ++ L+   P+  EG L+  R     N  L +   +      ++
Sbjct: 1068 SYERLEILGDSFLKIHQSLHLFALNPSQDEGWLTTSRMVAEQNLELCRRATEVGLQGLIL 1127

Query: 840  ATKFEPRDNWLPPG 853
             T+F  R  W+PP 
Sbjct: 1128 TTRFS-RKQWVPPA 1140


>gi|171690380|ref|XP_001910115.1| hypothetical protein [Podospora anserina S mat+]
 gi|170945138|emb|CAP71249.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1568

 Score =  105 bits (263), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 155/396 (39%), Gaps = 79/396 (19%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GD+FLK A TI +Y   P+  E +    R   + N NLF   
Sbjct: 1086 QVNFQRGMGNNYERLEFLGDAFLKMATTIAIYTLIPDKDEFEYHVERMVLICNRNLFNNA 1145

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E + +  F  R  W                   +P  L                
Sbjct: 1146 LEVKLEEYIRSMAFN-RRTW-------------------YPEGL---------------- 1169

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
             L+  K+K                  ++  +H + DKSIAD  EA+IGA  +     G  
Sbjct: 1170 TLKRGKRK------------------DIRKKHVLADKSIADVCEAIIGAAYLTAQEAGNF 1211

Query: 950  ----------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
                               +W     +      ++   + V  D  +KF + + YRF+  
Sbjct: 1212 DMAIQAVTRMVNDKNHTMQTWSDYYAVYKKPAWQTMPTNSVQEDMAEKFHKRMGYRFQYP 1271

Query: 994  SYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
              L  A  H +Y  +      YQRLEFLGDA+LD     HL+       P  LT+ + A+
Sbjct: 1272 RLLRSAFQHPTYPTSWEKLPSYQRLEFLGDALLDMACIDHLFHRFPGADPQWLTEHKMAM 1331

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG--ECDEA 1110
            V+N     LAV +GFH   +H SP +   I  +V  + E      +   + EG  E + A
Sbjct: 1332 VSNQFLGCLAVYIGFHRSLQHSSPAVQSEIASYV-TEIEEALAAAKAAAVQEGKSESNFA 1390

Query: 1111 EDIEV-----PKALGDLFESVAGAIYLDSGMSLDTV 1141
             D  V     PK L D  E+  GAI++DS     TV
Sbjct: 1391 RDFWVDCSRPPKCLPDTIEAYVGAIFVDSSYDYQTV 1426



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 66/284 (23%), Positives = 109/284 (38%), Gaps = 41/284 (14%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            ++  +  + + LP    T L P  T++  +      F C + LP  SP+ RS  G    
Sbjct: 653 QSLICLANFVSSLPHPPETNLTPEYTVNTTEGG----FQCEVILPAISPI-RSAIGKVHG 707

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
           +K +A   AA E C  L     LD  L P   + +    N    +           S+K+
Sbjct: 708 SKAVAKCSAAFEMCLQLVRGNYLDTHLRPTLTKQLPAMRNARLAI-----------SSKK 756

Query: 123 RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
           ++ Y  RM         ++  P  L+A  + L  P                     L +L
Sbjct: 757 KEEYGMRMKP---EVWSTLGEPTELFATALTLESP------------ESLGRPSLPLLLL 801

Query: 183 TTKYIPKVCSFPI-FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
           T + IP+V SFPI F +     V+  L D+ + + E  L++   F   +F  V   +   
Sbjct: 802 TRRRIPQVASFPIYFGKSRSSIVNFVLADEPIEVDEAELTSLTAFTLSIFKDVFSKEYEA 861

Query: 242 MLFD------PNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHH 279
             +D      P C ++S       SD    +IDW  +  + E++
Sbjct: 862 TFYDLPYFLAPTCKDHSSDFSAPASDE---LIDWDTVKYVQENN 902


>gi|322702026|gb|EFY93774.1| Dicer-like protein 1 [Metarhizium acridum CQMa 102]
          Length = 1524

 Score =  105 bits (262), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 116/435 (26%), Positives = 171/435 (39%), Gaps = 110/435 (25%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D++  +  + +RLE +GD+FLK A TI L+   PN +E +    R   + N NLF     
Sbjct: 1078 DVDVQSNKNYERLEFLGDAFLKMATTISLFTLIPNKNEFEYHVERMILICNKNLFN---- 1133

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                                  + V + L+  +   GF    W            P+ VL
Sbjct: 1134 ----------------------HAVDRGLQEYVRSRGFDRRSWY-----------PDLVL 1160

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALL 950
               K+                 P  L   H + DKSIAD  EALIGA Y+ E  P G   
Sbjct: 1161 RKGKKH---------------KPVALT--HRLADKSIADVCEALIGAAYMTE--PEGM-- 1199

Query: 951  FMSWLGLKVIPPVTNPESKHLSDV--LLDGF------------------DKFEESINYRF 990
                L +K +  +    +  ++      +G+                  DK E SI Y+F
Sbjct: 1200 ---NLAVKAVTKMVQSRNHRMTKYSDYYEGYVQQAWQTIPPRPIEVLAADKVEGSIGYKF 1256

Query: 991  KDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
            +    L  A  H SY        YQRLEFLGDA+LD  I   L+       P  LT+ + 
Sbjct: 1257 RSPKLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFRRYPLADPQWLTEHKM 1316

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV------KMQAEN-----DFTLNQE 1099
            A+ +N  F+ L V LG H         +   I  FV      K+Q E+     DF LN E
Sbjct: 1317 AMASNHFFSFLCVELGLHRHILSTGSSMMGHIAGFVEQIEKAKLQTEDGVLQLDFWLNTE 1376

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV- 1158
            +               PKAL D+ E+V GA+Y DS    ++V   + + +    + +++ 
Sbjct: 1377 H--------------PPKALSDILEAVVGAMYEDSKYDYNSVRDFFTKFIAPHFQDMTLY 1422

Query: 1159 --SVPKSPIRELLEL 1171
                   P+ +L +L
Sbjct: 1423 DTYAAGHPVTQLTKL 1437


>gi|321468043|gb|EFX79030.1| hypothetical protein DAPPUDRAFT_319984 [Daphnia pulex]
          Length = 488

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 93/175 (53%), Gaps = 4/175 (2%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            L+   KFE  ++Y   DK  LL+A TH +   +  +  YQRLE +GDA L +L   + ++
Sbjct: 81   LNSLAKFENILHYTSNDKEVLLEAFTHGN---SMKSQNYQRLELIGDAALGFLSALNFFK 137

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                H+ G +T LRSA V N  F   A + GFH   ++L P L + +  F+++    +FT
Sbjct: 138  KSLTHTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFT 197

Query: 1096 LNQ-EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                E  L       A  + +P  L D+FE+V GAI +D+ +S +T+ +VY   M
Sbjct: 198  FAPFERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFM 252



 Score = 43.5 bits (101), Expect = 0.77,   Method: Compositional matrix adjust.
 Identities = 40/127 (31%), Positives = 60/127 (47%), Gaps = 16/127 (12%)

Query: 960  IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEF 1019
            +PP +  +SK L+   L     FEE +NY F  K  LL+A+T+ +  + +L   YQRLE 
Sbjct: 312  VPPKSK-KSKPLTSNQLSAVKAFEEILNYSFNYKEVLLEALTYGNS-IRSLN--YQRLEV 367

Query: 1020 LGDAILDYLITRHLYEDE-----RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +GDA  +    R L E+E     +   P   TD+  A+    I  S    L F       
Sbjct: 368  IGDAPFE----RELAENEEIIATQVAIPSFQTDVFEAVSGAFIIDS---DLSFETLENFF 420

Query: 1075 SPGLHEV 1081
            +P ++ V
Sbjct: 421  APFMNSV 427



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 9/110 (8%)

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            E  L E E   A  + +P    D+FE+V+GA  +DS +S +T+   +   M S  +    
Sbjct: 374  ERELAENEEIIATQVAIPSFQTDVFEAVSGAFIIDSDLSFETLENFFAPFMNSVYD---- 429

Query: 1159 SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            S P SP  + LE  P    F K +   DGR    T  V+  G+    G N
Sbjct: 430  SPPVSPFNQ-LEKTP-GITFQKGKARPDGRP---TFSVYRNGALLATGNN 474


>gi|167046032|gb|ABZ10547.1| dicer-like protein E [Trichoplax adhaerens]
          Length = 359

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 64/378 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD +L Y IT+     +P+    ++ +       N  LF+LG  +     ++  
Sbjct: 15   ERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKLFRLGAGRRIPYYIVGC 74

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F    +W+PPG+                                      +I Q   +L
Sbjct: 75   PFNQNKSWVPPGF--------------------------------------VINQTVSEL 96

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                     S+      T   +  K+IADCVE LIG   + CG    L FM WLG ++  
Sbjct: 97   ---------SIAMSREYTHQPLTKKAIADCVEGLIGYLCLVCGRNSVLRFMRWLGFEISE 147

Query: 962  PVTN-----PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQ 1015
             +       P     +++  +  +  E  +NY F+++S L+ A+TH SY  L +++  Y+
Sbjct: 148  CLDGIQELIPSIDFRTNLYSETANSVETILNYSFRNRSLLMLALTHKSYSGLESIS--YE 205

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            +L FLGD +L Y I   LY     + P     L   L  N ++  +A+      F  H S
Sbjct: 206  KLAFLGDTLLIYQICLFLYTQYTDYQPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKS 265

Query: 1076 PGLH-EVIQRFVKMQAENDFTLNQ------EYYLMEGECDEAEDIE--VPKALGDLFESV 1126
              L  ++ + +  ++A++  + +        Y +      E   IE  VPK LGD F +V
Sbjct: 266  RELTLQIDEIYQALEADDVQSFSSTVQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAV 325

Query: 1127 AGAIYLDSGMSLDTVWKV 1144
              A++LD+    DT  ++
Sbjct: 326  VAAVFLDNYPDEDTAGRI 343


>gi|302693114|ref|XP_003036236.1| hypothetical protein SCHCODRAFT_31237 [Schizophyllum commune H4-8]
 gi|300109932|gb|EFJ01334.1| hypothetical protein SCHCODRAFT_31237, partial [Schizophyllum commune
            H4-8]
          Length = 1342

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 166/395 (42%), Gaps = 78/395 (19%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ L+ + T+ L+  YP+ HEG+L+ LR   +SN  L    ++          
Sbjct: 945  QRLETLGDAVLELSTTVHLFNKYPHRHEGQLTPLRQICISNKCLLTRARE---------- 994

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                              LE  L       S+W                           
Sbjct: 995  ----------------VQLERFLTSETHSLSIW--------------------------- 1011

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
            D   D  V +     L  + S+ D     C+EA++GA  +  G   AL   + LGL    
Sbjct: 1012 DYVEDSEVPARCARRLFPRRSLQD-----CMEAILGASYLTGGIDTALHAGTALGLAFGG 1066

Query: 962  PV--TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEF 1019
             V       +       D F + +  + Y F+D   L +A+TH+S+        Y+RLEF
Sbjct: 1067 SVPWPRRYPRRRRVPTPDLFSELQAKLGYTFRDGGLLCEALTHSSFASLDSYGSYERLEF 1126

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGDA+++  +  +LY      +   L+  R+  V N   ++L+V        KHL   LH
Sbjct: 1127 LGDAVINLAVVDYLYRKFPDANSDQLSLPRARAVCNQALSALSV--------KHLQ--LH 1176

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGE-----CDEAEDIEVPKALGDLFESVAGAIYLDS 1134
            + +   +    E    +N+   ++E +       +   ++ PK L D+FES+ GA+++D+
Sbjct: 1177 KSV---LVNNVELSIAINKHAPILEDKPYPEILVKGWKLDPPKVLSDIFESIVGAVFVDT 1233

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
            G   +    V  + M+  +  LS ++P+ P+ EL+
Sbjct: 1234 GYDYEITAAVVEQAMEGLLVHLSPAMPRDPVSELI 1268


>gi|134084339|emb|CAK48679.1| unnamed protein product [Aspergillus niger]
          Length = 1531

 Score =  105 bits (262), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 108/436 (24%), Positives = 172/436 (39%), Gaps = 111/436 (25%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 1052 QIHVQRGMGRNYERLEFLGDCFLKMATSIALFTQNPDDDEFDYHVNRMCLICNKNLFNAA 1111

Query: 830  KQKVFGESMIATKFE-----PRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKE 884
              K   + + +  F       R  W P G                       L L   K+
Sbjct: 1112 VDKEIYKYIRSRGFSRLTDAARHTWYPEG-----------------------LKLLQGKD 1148

Query: 885  LSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG 944
             S +   E                          ++H++ +K+IAD  EALIGA L+  G
Sbjct: 1149 HSRKATTE--------------------------SKHALAEKTIADVCEALIGAALLSGG 1182

Query: 945  PRGALLFMSWLGLKVIPPVTNPES---KHLSDVL------------LDGFD-----KFEE 984
            P         + +K +  + N  S   +   D +             DG +     K EE
Sbjct: 1183 PDHRFD----MAVKAVTTLVNSPSHKAERWKDYISFYTIPKYQRRAADGAELYLSRKIEE 1238

Query: 985  SINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
             ++YRF+  + L  A TH SY        CYQRLEFLGD+++D +    L+       P 
Sbjct: 1239 KLSYRFRYPTLLGSAFTHPSYPSAWAKVPCYQRLEFLGDSLIDMVCVEDLFARFPDRDPQ 1298

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LT+ + A+V+N    +LAV+LG H   K+ S  L   I ++            +E    
Sbjct: 1299 WLTEHKMAMVSNKFLGALAVKLGLHTHLKYFSAPLQSQITQYA-----------EEIQTA 1347

Query: 1104 EGECDEAED----------IEVPKALG-----------DLFESVAGAIYLDSGMSLDTVW 1142
            EGE + A D          +  P AL            D+ E+  GA+++DS  + + + 
Sbjct: 1348 EGESEGAVDYWTVTKDPPKVMTPSALRNTANVDGQCLPDMVEAYVGAVFVDSDFNFEVIE 1407

Query: 1143 KVYYEIMKSEIERLSV 1158
            + + + +K   E +++
Sbjct: 1408 RFFRDYIKPFFEDMAI 1423


>gi|389740167|gb|EIM81358.1| P-loop containing nucleoside triphosphate hydrolase protein [Stereum
            hirsutum FP-91666 SS1]
          Length = 1537

 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 121/454 (26%), Positives = 186/454 (40%), Gaps = 96/454 (21%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLET+GD+ LK+  ++ L   YP  HEG L+  +   VSN  L K   +K   + 
Sbjct: 1027 GMNYQRLETLGDTVLKFVTSLNLLSEYPFWHEGYLARRKDHAVSNAQLAKAAYEKKLFKY 1086

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
            +I   F PR        + P Y+  A +E   P S        + K   PE +   + ++
Sbjct: 1087 IIRDMFAPRK-------WRPTYIGGAKVE---PPS--------DAKAEDPEDMAPTVVKR 1128

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
                        ++        Q  I  K +AD VEALIGA  I      A+  +   GL
Sbjct: 1129 PQKGPSEAKKKQRAK------AQGEISTKVLADVVEALIGAAYIHGSFDLAVECIKVFGL 1182

Query: 958  KV---IPPVTNPESKHLSDVL-LDGF----DKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             +     P+       LS V+ L+ F       E  + Y F+ K+ L++A+THASY  + 
Sbjct: 1183 GLSCEWLPIAARIEPMLSRVIELEFFPTQLSAVENILGYTFERKALLVEALTHASYQTDL 1242

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
             T  Y+R+EFLGDA+LD L+T +LY    + + P  L   ++A+VN      + +R    
Sbjct: 1243 GTISYERMEFLGDAVLDMLVTDYLYHAPGKDYKPAELHLRKTAVVNGHFLGFICLRAS-- 1300

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTL---NQEYYLMEGEC------------------ 1107
                 +S  +   +      +  N F +    Q+  L   +C                  
Sbjct: 1301 ---TFISTEMPTKVNNPNSRRRGNAFLIQLEQQQERLYLSKCLLHSNSKVLELQSNAFAR 1357

Query: 1108 ----DEAEDIE------------------VPKALGDLFESVAGAIYLDSGMSLDTV---- 1141
                D  E IE                   PK L D+ ES+ GAI+LDS  + D V    
Sbjct: 1358 FEKTDGGEHIERSLLEDPIFPWAALTWLEAPKFLSDMVESLIGAIFLDSKGNWDVVRDVL 1417

Query: 1142 -----WKVYYEIMKSEIERLSVSVPKSPIRELLE 1170
                 W+V   I++ ++E       K P+  L E
Sbjct: 1418 RLLGIWEVLERIVRDDVE------VKHPVSRLAE 1445


>gi|321452752|gb|EFX64071.1| hypothetical protein DAPPUDRAFT_118569 [Daphnia pulex]
          Length = 344

 Score =  105 bits (261), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/248 (33%), Positives = 122/248 (49%), Gaps = 22/248 (8%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR----LEFLGDAILDYLITRHLYEDE 1037
             EE I Y FKDK+ L +A+TH+S     +T C  R    LE LGDA LD L  R+     
Sbjct: 68   LEEKIGYEFKDKTLLGRALTHSSA---NVTKCPSRDGENLEVLGDASLD-LNPRY----- 118

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH-EVIQRFVKMQAENDFTL 1096
               + G L+ L+SA+  N   A +AVR G H   +H  P    E ++ FV  Q +N    
Sbjct: 119  ---NQGQLSVLKSAITCNDTLAVIAVRSGLHLLLQHRLPEKQIEELRSFVDHQNKNQHLF 175

Query: 1097 NQEYYLM---EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
            + E  L+     E D A DI+ PK   D FES+ GA+ +D       + KV   +M   I
Sbjct: 176  SHEKELVIISSSEGDRAFDIDYPKVYADAFESLIGALRIDCEREDKVIRKVVLNLMGDVI 235

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK 1213
             +   ++P  P++ + + +     F + + L DG  V V +EV    S+ G G++   AK
Sbjct: 236  AKFHTNIPVCPLQRVNQNKIR-TEFKEEKNLPDG-TVNVILEVKNFQSFHGSGQSLKSAK 293

Query: 1214 CTAAKCAL 1221
              AA+ A+
Sbjct: 294  TAAARLAI 301


>gi|343791208|gb|AEM61141.1| RNase III dicer-like protein [Puccinia striiformis f. sp. tritici]
          Length = 1386

 Score =  104 bits (260), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/405 (24%), Positives = 178/405 (43%), Gaps = 82/405 (20%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LET+GD+FLK A ++ +Y ++    EG +SH+RSK V N  L +   Q      +++ +F
Sbjct: 944  LETVGDTFLKLATSVHVYLSHLKKGEGDMSHVRSKSVDNAYLRRKAVQANLPSFILSQRF 1003

Query: 844  EP---RDNW------LPPGYF---VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                 RD        L  G F   +P+ + + ++EA   A       L    EL      
Sbjct: 1004 RTDRFRDAQTEDGKELANGSFSRTIPRRVLSDVVEALLGAGF-----LTGGIELG----- 1053

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
                   + +   +D+     VP+N   Q ++     +  +  L  + L++C        
Sbjct: 1054 -------LKVGTALDLCFGGTVPWN---QRTLNLSFESAALSRLDPSILLKC-------- 1095

Query: 952  MSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                                        +  ++ I Y FK++  L+QA+TH S   + +T
Sbjct: 1096 ----------------------------ETLQQKIGYVFKEQLLLVQALTHRSAN-SFMT 1126

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHF 1070
            +CY+R E+LGDA++D  I  H ++     +   LT  R+ +V+N     LA+ +LG    
Sbjct: 1127 NCYEREEWLGDAVIDMWIVEHAFKRFANATAEELTLARARVVSNGSLGFLAIKKLGLQEI 1186

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV----PKALGDLFESV 1126
              H S    +  +  +  +A   FT  +E++       + +++ V    PK L D+ E++
Sbjct: 1187 IMHKSENFDQACREAI--EAIEPFTKIEEFF------SKMDNLFVVFDPPKILNDVLEAI 1238

Query: 1127 AGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
             G++++DSG  L TV++    I +  I  +S  V + P+  +L L
Sbjct: 1239 VGSVFIDSGFDLQTVYRTLDIIFEDVIPGMSRLVNRDPLSTMLRL 1283



 Score = 43.5 bits (101), Expect = 0.80,   Method: Compositional matrix adjust.
 Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 13/120 (10%)

Query: 4   AIFIVNRYCARLPSDIFTRL-APIITISEIKEDDSIMFTCSIRLPINS---PLKRSVTGH 59
           A  ++N  C  +P D F  + AP   ++ + ++    F C + LP  +   P +R+  G 
Sbjct: 525 ATSLLNDVCQLIPPDEFLPIVAPEYEMTCLGDN----FICQVTLPPMAALDPSQRTFKGL 580

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
           +M TK  A R AA EACRVL E   L+   +P  ++     +  +P      E+ET P S
Sbjct: 581 EMTTKKEAKRSAAFEACRVLRERGVLNEHFLPQRED-----KTGKPCDADGRELETAPLS 635


>gi|359485630|ref|XP_002270948.2| PREDICTED: ribonuclease 3-like protein 3-like [Vitis vinifera]
 gi|297739192|emb|CBI28843.3| unnamed protein product [Vitis vinifera]
          Length = 287

 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 70/191 (36%), Positives = 102/191 (53%), Gaps = 23/191 (12%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH---LYEDERA 1039
            E+ + Y F +K  L +A THAS   N  +  Y+RLEF+GD++L  LIT+    LY D + 
Sbjct: 34   EQILGYSFTNKRLLEEAYTHASCQKNQFS--YERLEFMGDSVLSLLITKEQFFLYPDLQ- 90

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
              PG LT LRSA V+    A +A++ G H F +H  P + + I  F +   E     N +
Sbjct: 91   --PGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                         IEVPK L D+ ES  GA+++D   S+DTVWKV+  +++  I   ++ 
Sbjct: 149  -------------IEVPKVLADVVESTIGAVFVDCNCSVDTVWKVFKGLLEPMIVPETLK 195

Query: 1160 VPKSPIRELLE 1170
            V   P+ EL E
Sbjct: 196  V--HPVTELNE 204


>gi|385047860|gb|AFI39691.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  104 bits (260), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 65/170 (38%), Positives = 91/170 (53%), Gaps = 11/170 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVTKEFI 97
           +F C + LP+NSPL+  V G  MPTK LA R  A++A   L+E KEL DN L PV +  +
Sbjct: 29  LFQCHLFLPLNSPLRDEVIGDVMPTKRLAKRAVALKASIXLHEXKELDDNHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R   CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESSTXDE--ENSAAPQLNKENIAVYNRRXPXCFSNCRPLPGQPCFVYAIDFTLXK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSI 206
           P  D       K++ P      LAI T+K IP +C FP+ TR GE  V++
Sbjct: 145 PCLDXT-----KLYFPFXVDTKLAIXTSKVIPAICPFPVXTRAGEFXVNL 189


>gi|380481939|emb|CCF41547.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
          Length = 1588

 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 113/408 (27%), Positives = 173/408 (42%), Gaps = 104/408 (25%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  G + +RLE +GD FLK A TI ++   P+ +E      R   + N NLF     
Sbjct: 1125 NFQSGMGKNYERLEFLGDCFLKMATTIAIFTENPDSNEFGYHVDRMLLICNQNLFNKAVD 1184

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            +   E + +  F+ R +W P G                                     L
Sbjct: 1185 RNLPEYVRSKSFD-RRSWYPSG-------------------------------------L 1206

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YL-------IEC 943
             +I+ K    + +V++            +H++ DKS+AD  EALIGA YL        + 
Sbjct: 1207 RLIRGK----EGSVNL------------RHALADKSVADVCEALIGAAYLTYADSSDFDM 1250

Query: 944  GPRGAL--------LFMSW--LGLKVIPPV-----TNPESKHLSDVLLDGFDKFEESINY 988
              R           L  SW        PP        P  K L+        + ++ + Y
Sbjct: 1251 AIRAVTAVVKSKNHLMTSWGDYYAAYTPPAWQFADPTPMQKELAR-------QIKDKLGY 1303

Query: 989  RFKDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             FK  + L  A  H SY      L D YQRLEFLGDA+LD +    L+       P  LT
Sbjct: 1304 EFKSPALLRSAFKHPSYPRAYENLPD-YQRLEFLGDALLDMVCVDFLFHKFPDADPQWLT 1362

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            + ++A+V+N   ASL V+LG H   KH+  G   ++ +       +DF ++ E    +GE
Sbjct: 1363 EHKTAMVSNQFLASLCVKLGLH---KHVLSGHASLLNQ------THDFVVSLESAKKDGE 1413

Query: 1107 CD----EAEDIEV---PKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
             D    +A  I V   PK L D+ E+  GAI++DSG   + V +V+++
Sbjct: 1414 ADGTFTQAYWINVQHAPKYLSDVVEAYIGAIFIDSGYDYNHV-RVFFD 1460


>gi|167046034|gb|ABZ10548.1| dicer-like protein E [Placozoa sp. DMJ-2008]
          Length = 359

 Score =  104 bits (259), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 94/378 (24%), Positives = 158/378 (41%), Gaps = 64/378 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD +L Y IT+     +P+    ++ +       N  LF+LG  +     ++  
Sbjct: 15   ERLEFLGDRYLNYKITLTTLLEHPSWSINEVINRMRFLTKNKKLFRLGAGRRIPYYIVGC 74

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F    +W+PPG+                                      +I Q   +L
Sbjct: 75   PFNQNKSWVPPGF--------------------------------------VINQTVSEL 96

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                     S+      T   +  K+IADCVE LIG   + CG    L FM WLG ++  
Sbjct: 97   ---------SIAMSREYTHQPLTKKAIADCVEGLIGYLCLVCGRNSVLRFMRWLGFEISE 147

Query: 962  PVTN-----PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQ 1015
             +       P     +++  +  +  E  +NY F+++S L+ A+TH SY  L +++  Y+
Sbjct: 148  CLDGIQELIPSIDFRANLYSETANSVETILNYSFRNRSLLMLALTHKSYSGLESIS--YE 205

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            +L FLGD +L Y I   LY     + P     L   L  N ++  +A+      F  H S
Sbjct: 206  KLAFLGDTLLIYQIYLFLYTQYTDYQPKDYHLLLEYLTCNRMYGIVAIASDLCKFLLHKS 265

Query: 1076 PGLH-EVIQRFVKMQAENDFTLNQ------EYYLMEGECDEAEDIE--VPKALGDLFESV 1126
              L  ++ + +  ++A++  + +        Y +      E   IE  VPK LGD F +V
Sbjct: 266  RELTLQIDEIYQALEADDVQSFSSTVQSGCSYKMKTTLLLEKLSIEQFVPKELGDTFAAV 325

Query: 1127 AGAIYLDSGMSLDTVWKV 1144
              A++LD+    DT  ++
Sbjct: 326  VAAVFLDNYPHEDTAGRI 343


>gi|453081348|gb|EMF09397.1| dicer-like protein 1 [Mycosphaerella populorum SO2202]
          Length = 1541

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 164/411 (39%), Gaps = 77/411 (18%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + +RLE IGD+FLK A TI  +   PN +E      R + + N NLF +  +
Sbjct: 1060 NFQRGMGENYERLEFIGDTFLKTATTISTFIQNPNENEFAFHVRRMQMLCNKNLFGVALK 1119

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W P G                            LK LS   V+
Sbjct: 1120 LKLYEYIRSIAFN-RRYWYPEG----------------------------LKLLSGTGVI 1150

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
            +                 Q    ++    H + +K+IAD  EALIGA  +     GA   
Sbjct: 1151 K----------------GQEKENFHEPRNHDLGEKTIADVCEALIGAAYLTWDQPGAWQA 1194

Query: 952  MSWL-GLKVIPPVTNPESKHL--------------------SDVLLDGFDKFEESINYRF 990
              W   +K +  + + +   +                    + V  D   K E    YRF
Sbjct: 1195 EHWTNAVKAVTTLVDSDDHRMLTWDDYRTAYSKPHYQTAEATAVQRDLAQKVEREHAYRF 1254

Query: 991  KDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            K    L  A  H S  ++N     YQRLEFLGDA+LD      L+       P  LT+ +
Sbjct: 1255 KYPRLLYSAFMHPSVPYINEKVPNYQRLEFLGDALLDQASITWLFNKYPDKDPQWLTEHK 1314

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYYLMEGEC 1107
             A+V+N    ++ V +GFH   +H    L   I  +    M+A+     +++Y+    + 
Sbjct: 1315 MAMVSNKFLGAVCVNIGFHKHLRHYHAVLQSQITAYAADLMEAKRIAGDSRDYWTTVSDP 1374

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                    PK L D+ E+  GA+++DS  +   V + ++E ++   E ++V
Sbjct: 1375 --------PKCLPDIVEAYIGALFIDSDFNYGEVQRFFHEHVQWYFEDMTV 1417


>gi|242763899|ref|XP_002340666.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
 gi|218723862|gb|EED23279.1| RNA helicase/RNAse III, putative [Talaromyces stipitatus ATCC 10500]
          Length = 1494

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 79/260 (30%), Positives = 120/260 (46%), Gaps = 34/260 (13%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVL----- 975
            H++ +K+IAD  EALIGA L+  GP         + +K +  + N +  ++ +       
Sbjct: 1132 HALGEKTIADVCEALIGASLLSGGPVNRFD----MAVKAVTALVNSDHHNVDNWAEYSSR 1187

Query: 976  ----------LDGFDK-----FEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEF 1019
                       DGF+K      E  + Y F+    L  A TH SY    +   CYQRLEF
Sbjct: 1188 YSLPPYQIKEADGFEKDLARQVEMKLGYCFQYPKLLRSAFTHPSYPSAWSTVPCYQRLEF 1247

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGD++LD +    LYE      P  LT+ + A+V+N    SLAVRL  H   ++ S  L 
Sbjct: 1248 LGDSLLDMVCVEDLYERFPDRDPQWLTEHKMAMVSNKFLGSLAVRLSLHTHLQYFSNPLQ 1307

Query: 1080 EVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
              I R V+  Q   D     +++L           + PK L D+ E+  GAI++DSG   
Sbjct: 1308 AQIARAVQDSQLAYDSHQTVDFWLHTD--------DPPKCLSDMVEAYLGAIFVDSGFDF 1359

Query: 1139 DTVWKVYYEIMKSEIERLSV 1158
              +   Y + +K   E +++
Sbjct: 1360 GVIESFYAKHIKPYFEDMAL 1379



 Score = 66.6 bits (161), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 101/474 (21%), Positives = 189/474 (39%), Gaps = 86/474 (18%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            +A+ ++ RY + L ++  + L P    ++ K     ++ C + LP  SP+ R + G   P
Sbjct: 606  SAMTVLARYASSLINEAHSSLHPCYVTTQTKG----LYECEVILPEASPI-RGLIGKPEP 660

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K LA + AA E C +L     L ND       F++ Y+   P + +  ++     ++K+
Sbjct: 661  RKSLAKQSAAFETC-ILLRRHGLLND------HFVSTYQRRLPAM-RNAKLSI---TSKK 709

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
               Y   +   F   +   + PC LY   +  +   P ++ +R             L +L
Sbjct: 710  TSQYSMIVKPAFWK-KGCDHVPCELYLTVIMFSPAEPLQKERRN------------LVLL 756

Query: 183  TTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLM 242
            T + +P+   FPI+    +VE +I  I     LS   LS + + +   FT  +    Y  
Sbjct: 757  TRERLPQFPEFPIYLD-DDVETTIRTISMYKALS---LSASELELLTTFTLRIFQDLYNK 812

Query: 243  LFDPNCSENSYFIVPTVSDSEQI--------VIDWKFMTLISEHHN-DVIQDIPEKEREN 293
            +++ N     Y++VPT S   +         VIDW  +  + ++   D     PE     
Sbjct: 813  VYEMNQEAMPYWLVPTASGIGEYGEDANPSEVIDWDTLQFVMDNERLDRNSASPEDFVGR 872

Query: 294  FVFD--ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPR----SMFPSRTNTYQTFEEY 347
            FV+D    K+R                +++  + T+ HP     S  P R       E  
Sbjct: 873  FVYDTWNGKYR----------------YFLTGVNTSFHPSDPPPSFVPHRRYMENIMEYG 916

Query: 348  YSLKYGLQIQNL-----EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
             SL    +++ L      QP+ D +    R N L                 +   +  + 
Sbjct: 917  LSLYKNSRVRFLAECDWNQPVYDAELIPLRRNLL-----------------DKMSDAEKD 959

Query: 403  LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGL 456
            + K+ ++  E  +I   PA +    ++ P+++ R ++ L+A E    +  ++ L
Sbjct: 960  VEKRVVVCLETQVISAIPAMVATSCLAFPAVITRFDSYLVARECTDTLGLKVQL 1013



 Score = 47.4 bits (111), Expect = 0.054,   Method: Compositional matrix adjust.
 Identities = 29/84 (34%), Positives = 39/84 (46%), Gaps = 1/84 (1%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   PN  E      R   + N NLF   
Sbjct: 1034 QIHFQRGMGKNYERLEFLGDCFLKMATSISLFVESPNDQEYDFHVNRMTLICNRNLFNTA 1093

Query: 830  KQKVFGESMIATKFEPRDNWLPPG 853
             Q+   E + +  F  R NW P G
Sbjct: 1094 IQRKIYEHIRSKGFS-RRNWYPDG 1116


>gi|429848709|gb|ELA24159.1| RNase3 domain protein [Colletotrichum gloeosporioides Nara gc5]
          Length = 1561

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 166/398 (41%), Gaps = 84/398 (21%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  G + +RLE +GD FLK A TI ++ + P+  E +    R   + N NLF     
Sbjct: 1095 NFQSGMGKNYERLEFLGDCFLKMATTIAIFTSKPDDDEFQYHVQRMLLICNQNLFNKAVD 1154

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            +   E + +  F+ R +W P G                       L L   K+  P    
Sbjct: 1155 RGLQEYVRSQSFD-RRSWYPQG-----------------------LKLMRGKQGQP---- 1186

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA----------YLI 941
                                        +H++ DKSIAD  EALIGA          Y +
Sbjct: 1187 --------------------------ANKHALADKSIADVCEALIGAAYLSYADSDNYDM 1220

Query: 942  ECGPRGALL------FMSWLGLKVIPPVTNPE--SKHLSDVLLDGFDKFEESINYRFKDK 993
                  A++        SW     +    +PE   +  + +  D   + EES+ Y+FK  
Sbjct: 1221 AIRAVTAMVKEKTHRMTSWG--DYVAGYRHPEWQFRKPTPIQRDMAQQVEESMGYKFKSP 1278

Query: 994  SYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            + L  A  H SY     +L D YQRLEFLGDA+LD +    L+       P  LT+ + A
Sbjct: 1279 ALLRSAFHHPSYPRAYESLPD-YQRLEFLGDALLDMVCVDFLFNKFPNADPQWLTEHKMA 1337

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVI-QRFVKMQAENDFTLNQEYYLMEGECDEA 1110
            +V+N   ASL+V+LG H   KH+  G   ++ Q+   + + N      E     G   + 
Sbjct: 1338 MVSNQFLASLSVKLGLH---KHILVGTSAMLSQKEEYVSSLNLAMAEAESGAESGMFSQD 1394

Query: 1111 EDIEV---PKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
              I V   PK L D+ E+  GA+++DSG   + V K +
Sbjct: 1395 YWINVKHSPKYLSDVLEAYVGAVFVDSGYDYNEVRKFF 1432


>gi|350646449|emb|CCD58848.1| ribonuclease III, putative [Schistosoma mansoni]
          Length = 928

 Score =  104 bits (259), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 158/391 (40%), Gaps = 94/391 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYP-NVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +RLE  GDSFL +  T+ +Y T P +  EG LS  R   VSN +L  +     + E    
Sbjct: 548  ERLEFYGDSFLHFIATLCVYGTNPQDADEGCLSSKRGSLVSNAHLCDIACDLKWYEYCTG 607

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
              F P      P +F+P     A     +   L+  L+                      
Sbjct: 608  QTFSP------PEHFLPPCYSVASEACKYDPRLYTRLT---------------------- 639

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM-------- 952
                                    DKS+AD VEALIG +L+  G   A   +        
Sbjct: 640  ------------------------DKSLADMVEALIGCFLLRSGLSAAFNLLHYFQICPV 675

Query: 953  SWLGLK-------------VIPPVTNPE------------SKHLS-DVLLD---GFDKFE 983
            SW  LK              + P    E            S H+S +++L+    F + +
Sbjct: 676  SWSTLKNDKHYKVEAPWHFFLQPKLYSELNCGNALNASCRSLHISKEIILELNQRFFQLQ 735

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPG 1043
            E + Y FK    L +AMTH S         YQRLEFLGD+IL ++I+ +L++     SPG
Sbjct: 736  EKLGYYFKGIELLAEAMTHQSSINKQYWGNYQRLEFLGDSILGHIISNYLFQKCPNSSPG 795

Query: 1044 TLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
             LT  RS +V+NI  A++ V    + F    +  L   I     +  + D    +   L+
Sbjct: 796  ALTTARSTVVSNINLANVVVEHDIYPFIDFGNCSLKACIDDIKSIHRQTDSHF-ERIELI 854

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
              +     +++V   L D+FES+ GAI++DS
Sbjct: 855  TKKVSSGLNVKV---LADVFESILGAIFVDS 882



 Score = 40.0 bits (92), Expect = 7.6,   Method: Compositional matrix adjust.
 Identities = 29/113 (25%), Positives = 56/113 (49%), Gaps = 12/113 (10%)

Query: 343 TFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL-TPRYVNRKGINLATTSEETRREIRE 401
           T+ +YY +KY    Q ++     +D +      L   R+ N   +N         R+ + 
Sbjct: 347 TYSDYYRIKY----QQMKTISFTIDPSLPLFECLRITRHQNSTQVNAGL------RKNKA 396

Query: 402 SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
           S+ K  L + + CL+HP  + +W +   +P+ILY+++  LLA ++ T +  E+
Sbjct: 397 SI-KPSLFLSDACLVHPLSSWIWFQVSLVPTILYQMSRALLASQLFTELNYEL 448


>gi|345571082|gb|EGX53897.1| hypothetical protein AOL_s00004g556 [Arthrobotrys oligospora ATCC
            24927]
          Length = 1587

 Score =  103 bits (258), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 95/336 (28%), Positives = 150/336 (44%), Gaps = 31/336 (9%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGF- 979
            H + DKS+AD  EALIGA L   G   A   ++ L  K I  V N    + S   L  + 
Sbjct: 1228 HRLSDKSMADVCEALIGASLCGGGLDMAARMVTTLVNKSIHKV-NSFKDYYSLYTLPEYQ 1286

Query: 980  ------------DKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILD 1026
                        DK E  + Y+FK    L  A TH S+  +     CY+RLEFLGDA++D
Sbjct: 1287 IGPVNASQQELADKIERDMGYKFKYPRLLRSAFTHPSFPTMWEKIPCYERLEFLGDALID 1346

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
                  L+E      P  LT+ + +++NN    +L+V+L FH   + +   ++  +Q +V
Sbjct: 1347 MACVEDLWERFPGKDPQWLTEHKMSMINNRFQGALSVKLKFHTHLRAMGAHINSAVQEYV 1406

Query: 1087 KMQAENDFTLNQEY-YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
            ++  E     N    Y ++ +       + PK L D+ E+  GAI++DSG + D V   +
Sbjct: 1407 QLIEEARIASNDSVDYWIDAK-------QPPKVLPDILEAYVGAIFVDSGFNYDVVTSFF 1459

Query: 1146 YEIMKSEIERLSV---SVPKSPIREL----LELEPENAR-FSKPEKLADGRRVRVTVEVF 1197
               ++     +S+        P+  L     EL   + R FSK  K  D   V   V   
Sbjct: 1460 RTHVRPFFTDMSIFDSFAGNHPVTHLTTRMTELGCSDFRIFSKEYKDRDKSYVLSVVIFH 1519

Query: 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
             K   +G   +   ++  AAK +L+ L +   A+ +
Sbjct: 1520 DKILAEGKASSKKNSRTNAAKHSLEKLATMSAAEFR 1555



 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 107/428 (25%), Positives = 168/428 (39%), Gaps = 82/428 (19%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPV-TKEFIN 98
            F C +++P  SP+ RSV G    +K  A R AA EAC+ L+  K LD+ LMP+ TK    
Sbjct: 728  FKCEVKMPEISPI-RSVLGDTARSKGAAKRHAAFEACKKLHHGKYLDDYLMPIYTKRLRP 786

Query: 99   LYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPI 158
            +  N    V  + ++ +YP   K          S +    P V  P  L+A  + L  P 
Sbjct: 787  MMANAHLAV-DSHKLSSYPSQIK---------PSFWDRKEPPV--PTRLWATCLTLRHP- 833

Query: 159  PDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI-FTRCGEVEVSIELIDKNVVLSE 217
                       +  E   QG+ + T    PK  SF + F R G+  V    +D  ++  E
Sbjct: 834  -----------NQLEKPSQGICLATRDKPPKFPSFTLYFDRGGQSLVDCVTMDDPIICDE 882

Query: 218  ENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP-----TVSDSEQI--VIDWK 270
              +     F    F  +   +     FD    +  Y+++P     TV+ +  I  +IDW+
Sbjct: 883  NKIKQFNEFTSRFFIDIFNKE-----FDIQTEKLPYWVLPIKLNKTVTSASSIDDMIDWE 937

Query: 271  FMTLI---SEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTN 327
             +  +    E + D+    PE     FV D  +                  FY+ +    
Sbjct: 938  LVMNVFKNPEENFDLATTPPEFYFGKFVIDRRQ--------------GSRRFYILDHEPK 983

Query: 328  VHPRSMFP-SRTNTYQTFE----EYYSLKYGLQ--IQNL--EQPLLDVDHTSCRLNFLTP 378
             HP    P   +N   T       Y + K G Q  + +L  +QP+L  D    RLNFL  
Sbjct: 984  YHPYDPIPEGASNAPHTVSIIDYSYSAGKKGWQRWVGDLPPDQPVLIADRVLHRLNFL-- 1041

Query: 379  RYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLN 438
                       T  E+T+  +         +VP    + P PA      +  P+I+ R++
Sbjct: 1042 --------ERPTEREKTQNTM-------AYVVPSPFRVSPLPAKFCTMGLLFPAIITRID 1086

Query: 439  ALLLADEI 446
            A L A ++
Sbjct: 1087 AYLQAYDV 1094


>gi|321457594|gb|EFX68677.1| hypothetical protein DAPPUDRAFT_329838 [Daphnia pulex]
          Length = 291

 Score =  102 bits (255), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 60/175 (34%), Positives = 92/175 (52%), Gaps = 4/175 (2%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            L+   KFE  ++Y   DK  LL+A TH +   +  +  YQRLE +GDA L +L   + + 
Sbjct: 81   LNSLAKFENILHYTSNDKEVLLEAFTHGN---SMKSQNYQRLELIGDAALGFLSALNFFI 137

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                H+ G +T LRSA V N  F   A + GFH   ++L P L + +  F+++    +FT
Sbjct: 138  KSLTHTSGDITKLRSACVCNDTFGVWAAKYGFHEHVQNLPPILLKQLNDFLEVVERENFT 197

Query: 1096 LNQ-EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                E  L       A  + +P  L D+FE+V GAI +D+ +S +T+ +VY   M
Sbjct: 198  FAPFERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFM 252


>gi|158706522|sp|Q4WVE3.3|DCL1_ASPFU RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1537

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/414 (26%), Positives = 168/414 (40%), Gaps = 88/414 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   PN  E      R   + N NLF   
Sbjct: 1078 QIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTA 1137

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K     + +  F  R  W P G                       L+L + K+ S + 
Sbjct: 1138 IKKQIYRYIRSRGFS-RHIWYPDG-----------------------LTLLHGKDHSTKL 1173

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR--- 946
            + E                           +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1174 LSE--------------------------GKHALGEKTIADVCEALIGASLLSGGPEHRF 1207

Query: 947  -------GALL---------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
                    AL+         +  ++ L  +P     + +   D   D     EE + Y F
Sbjct: 1208 DMATKAVSALVDSPSHRVSCWKEYITLYTLPKYQTEKHRGSED---DLARHVEEELGYHF 1264

Query: 991  KDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
                 L  A+TH S          CYQRLEFLGD++LD +    L+       P  L++ 
Sbjct: 1265 TYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEH 1324

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK----MQAENDFTLNQEYYLME 1104
            + A+V+N    +L+V+LGFH      S  L   I  +V+     QAE+   +  +Y+++ 
Sbjct: 1325 KMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAESQGAV--DYWVV- 1381

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                 A+D   PK L D+ E+  GAI++DS      +   +   +K   E +S+
Sbjct: 1382 -----AKD--PPKCLPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSI 1428


>gi|322704697|gb|EFY96289.1| Dicer-like protein 1 [Metarhizium anisopliae ARSEF 23]
          Length = 1476

 Score =  102 bits (255), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 115/399 (28%), Positives = 156/399 (39%), Gaps = 101/399 (25%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            D++  T  + +RLE +GD+FLK A TI L+   PN +E +    R   + N NLF     
Sbjct: 1030 DVDVQTSKNYERLEFLGDAFLKMATTISLFTLIPNRNEFEYHVERMILICNKNLFN---- 1085

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                                  + V + L+  +   GF    W            P+ VL
Sbjct: 1086 ----------------------HAVDRGLQEYVRSRGFDRRSWY-----------PDLVL 1112

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALL 950
               K+                 P  L  +  + DKSIAD  EALIGA Y+ E  P G  L
Sbjct: 1113 RKGKKH---------------KPVGLTQR--LADKSIADVCEALIGAAYMTE--PEGMDL 1153

Query: 951  FMSWLGLKVIPPVTNPESKHLSD-----------------VLLDGFDKFEESINYRFKDK 993
             +    + V+    N   K  SD                 + L    K + SI Y F+  
Sbjct: 1154 AVK--AVTVMVQSKNHRMKKYSDYYEKYVQPAWQTIPSRPIELLAVGKVKASIGYNFRSP 1211

Query: 994  SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
              L  A  H SY        YQRLEFLGDA+LD  I   L++      P  LT+ + A+ 
Sbjct: 1212 KLLRSAFKHPSYPYEPELPNYQRLEFLGDALLDVAIVDFLFQRYPLADPQWLTEHKMAMA 1271

Query: 1054 NNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV------KMQAEN-----DFTLNQEYYL 1102
            +N  F+ L V LG H         +   I  FV      K Q E+     DF LN E+  
Sbjct: 1272 SNHFFSFLCVELGLHRHILSTGSSIMGHIAGFVEQIEKAKSQTEDGVLQLDFWLNTEH-- 1329

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
                         PKAL D+ E+V GA+Y DS    ++V
Sbjct: 1330 ------------PPKALSDILEAVVGAMYEDSKYDYNSV 1356


>gi|449549195|gb|EMD40161.1| hypothetical protein CERSUDRAFT_112373 [Ceriporiopsis subvermispora
            B]
          Length = 1511

 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 167/402 (41%), Gaps = 67/402 (16%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LK+  ++ L+  YP  HEG L+  +   VSN  L +    K     +I  
Sbjct: 1027 QRLETLGDTVLKFLASLQLFAQYPLWHEGYLARRKDHAVSNARLAREALGKCLYRWIIRE 1086

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F PR  W P   +  +   T +  A    S             S +  + +  ++ VD 
Sbjct: 1087 RFVPR-KWKP--LYRVQEPSTIITNAEHSIS-------------SEQDSIPVEAEQEVDT 1130

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG----PRGALLFMSWLGL 957
            +    +  +               K +AD VEALIGA     G       A LF   L  
Sbjct: 1131 ELQKKLKKKKQSQQLST-------KVLADVVEALIGASYEHGGFDLAADCAALFGMGLTW 1183

Query: 958  KVIP-------PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            K +P         T P  +  + + L      E  +NY FK K  L++A+THASY     
Sbjct: 1184 KKVPDRISEILARTEPLEEPPTQLYL-----VERILNYTFKRKELLVEALTHASYHGEHA 1238

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNIIFASLAVRL---- 1065
               Y+RLEFLGD  LD ++T +LY    + ++PG +   + +LVN+   A + +R     
Sbjct: 1239 AMSYERLEFLGDCALDMVVTDYLYHAPGKEYTPGHMHLRKESLVNSHFLAFICLRAFTTT 1298

Query: 1066 -----------GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY---------YLMEG 1105
                       G     +H    LH+ +    +   E+       +          L+ G
Sbjct: 1299 EATSAHWTPKKGTSTTTEHQQIHLHQCLMHSSRRVLEDQHIAFSRFEKSGRKIEEMLLRG 1358

Query: 1106 EC---DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                      ++ PK L D+ ES+ GA+YLD+  SL+ V +V
Sbjct: 1359 TMYPWAALTSLQAPKFLSDMLESLLGAVYLDTEGSLEAVREV 1400


>gi|315044595|ref|XP_003171673.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
 gi|311344016|gb|EFR03219.1| hypothetical protein MGYG_06219 [Arthroderma gypseum CBS 118893]
          Length = 1518

 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 77/259 (29%), Positives = 121/259 (46%), Gaps = 29/259 (11%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFMS--------WLGLKVIPPV 963
            +H++ DK+IAD  EALIGA L+  GP        +   +F++        W     +  +
Sbjct: 1160 EHALADKTIADVCEALIGASLLAGGPDHKFDMATKAVTVFVNSDDHRVERWADYSKLYSL 1219

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFL 1020
             + ++   S   +D  ++ +  + Y F+    L  A  H SY   + N    CYQRLEFL
Sbjct: 1220 PSYQTAVASASEIDVANQIKSKLGYCFRYPKLLRSAFMHPSYPSQWANV--PCYQRLEFL 1277

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GD++LD +   HL+E      P  LT+ + A+V+N    SLAV L  H    H+S  L  
Sbjct: 1278 GDSLLDMVCVNHLFERYPDKDPQWLTEHKMAMVSNKFLGSLAVSLNLHVHLIHISNTLQG 1337

Query: 1081 VIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
             I  + +        L      MEG  +      E PK L D+ E+  GA+++DS  + D
Sbjct: 1338 QITSYTE-------ELQAMKIKMEGNLEAWTYTNEPPKCLPDIVEAYLGAMFVDSNFNFD 1390

Query: 1140 TVWKVYYEIMKSEIERLSV 1158
             V   + + ++   E +SV
Sbjct: 1391 VVDDFFRKFIQHYFEDMSV 1409



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 164/404 (40%), Gaps = 67/404 (16%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  SP+ R   G     KL A + AA E C +L + K LD       + FI+ 
Sbjct: 666  FICETILPEKSPI-RGCMGKSASRKLFAKQSAAFETCLLLRKNKLLD-------EYFIST 717

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
            Y    PV+       T   S K  ++      + + + R    +P  LYA  + L+    
Sbjct: 718  YHKRLPVMRNARLAIT---SKKSNKYSMISKPAAWEHSRG--ESPTLLYATVLSLS---- 768

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
            D QN + +  HP       + +LT   +P   SFP++     +C    + ++   K  VL
Sbjct: 769  DCQNLQ-KTYHP-------IVLLTRVPMPDFPSFPLYLEHNKKCSSFSIRVDQGFK--VL 818

Query: 216  SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV--------I 267
            S E L     F   +F  V     +  +++ N S  SY I P   D    +        I
Sbjct: 819  SPE-LDLLTKFTFRVFEDV-----FHKIYEENSSLVSYLIAPAKLDGVADIMKANPVELI 872

Query: 268  DWKFMTLISEHHNDVIQD--IPEKEREN-FVFD--ESKFRDAVVMPWYRNQFEPTYFYVA 322
            DW+ +  I +H+ +++    +P +  EN F+ D  + ++R      ++  + +PT     
Sbjct: 873  DWQMLQYI-QHNQELLWSPGMPNEFLENRFLVDKWDGRYR------YFSIKVDPTRRPQD 925

Query: 323  EIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG-LQIQNLEQPLLDVDHTSCRLNFLTPRYV 381
             +  NV  R  +     +Y     + + + G +   N +QP+L  +    R NFL     
Sbjct: 926  PVPENV-ARRRYMDNIMSY-CLSLFKNSRAGFMNSCNWDQPVLRSELIQLRRNFLDIDE- 982

Query: 382  NRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWR 425
            N+K    AT          E+L    + VP    I  FPA +WR
Sbjct: 983  NQKS---ATVDYYV---CVEALKISSISVPLATQIFVFPAMIWR 1020


>gi|158706448|sp|Q0UI93.2|DCL1_PHANO RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1522

 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 117/502 (23%), Positives = 199/502 (39%), Gaps = 97/502 (19%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LG 829
            + ++  GP+ +RLE +GD FLK A ++ ++   P  +E +    R   + N NL +  +G
Sbjct: 1041 NFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVG 1100

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
            K+K++    + T    R NW P G                                    
Sbjct: 1101 KKKLY--KYVRTDAFSRRNWYPEG------------------------------------ 1122

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
             L++++ K +       +NV           H++ DKS+AD  EA IGA  ++    G  
Sbjct: 1123 -LKLLRGKGLKKTEEDWLNVT----------HNLGDKSVADVCEAFIGAAFMQHHKGGQW 1171

Query: 950  LFMSW-LGLKVIPPVTNPESKHL---------------------SDVLLDGFDKFEESIN 987
                W   +K +    N +  HL                     +   LD   K E    
Sbjct: 1172 TPNDWDEAVKAVKLFANSDD-HLMEKWTDYYAAYTKPKYQTAGATATQLDLAHKIEMKHP 1230

Query: 988  YRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
            YRF+    L  A  H S  F+      YQRLEFLGD++LD     HL+       P  LT
Sbjct: 1231 YRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYKYPDKDPQWLT 1290

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            + ++ +V+N    ++ V+LG+H   K  +  L   I+ +V    E +   N       G 
Sbjct: 1291 EHKTPMVSNKFLGAVCVKLGWHTHMKQNTAILSSQIRDYVYEVEEAEREAN-------GA 1343

Query: 1107 CDEAEDI-EVPKALGDLFESVAGAIYLDSGMSLDTVWK--------VYYEIMKSEIERLS 1157
             D    + E PK L D+ E+   AI++DS    + V K         + ++     E  +
Sbjct: 1344 VDYWVSVSEPPKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDMTLDAYENFA 1403

Query: 1158 VSVPKSPIRELLELEPENARFS----KPEKL--ADGRRVRVTVEVFGKGSYKGIGRNYCI 1211
             + P + +  LL +    + +     + E L    G+ +   V +  K  +  +G++   
Sbjct: 1404 SNHPTTRLSRLLSINFGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHFHSLGQSGRY 1463

Query: 1212 AKCTAAKCALKHLKSAKPADVK 1233
            A+  A+  AL+ L+   P + +
Sbjct: 1464 ARVRASHAALEKLEGLPPYEFR 1485


>gi|392585234|gb|EIW74574.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1534

 Score =  102 bits (254), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 170/416 (40%), Gaps = 89/416 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE++GD+ LK  +  +LY  +P  HEG L+  R   VSN  L K   QK     ++  
Sbjct: 1054 QRLESLGDAVLKLVVGAYLYSEHPLWHEGYLTQRRDHAVSNVRLAKSAIQKKLYRWIVRD 1113

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F P+        F+P+YL              +     N +E S E             
Sbjct: 1114 HFAPKR-------FMPRYLT-------------DNRGATNEEENSDEN------------ 1141

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-I 960
                          N   +  +  K +AD VE+LIGA  +  G   A+  +  + + + +
Sbjct: 1142 -------------GNGKGKEDLSTKVLADVVESLIGAAYVHGGFELAISLIRTIDVHLAL 1188

Query: 961  PPVTNP--ESKHLSDVLLDG---FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             P++     +   +D  L+        +  I Y F     L++A+THAS+  +  T  Y+
Sbjct: 1189 SPLSASIEAAYAAADPSLEAPPQVAHVQNMIGYTFTKPLLLVEALTHASHQTDLRTVSYE 1248

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA------------- 1062
            RLEFLGDA+LD LI  +LY+  +  SPG +T LR   + N +F S A             
Sbjct: 1249 RLEFLGDAVLDMLIADYLYKHPKNFSPGEIT-LRKHAIGNALFLSYACLSSCTPVDASVP 1307

Query: 1063 -----------VRLGFHHFF-----KHLSPGLHE----VIQRFVKMQAENDFTLNQEYYL 1102
                       +R    H +      H S  L +       RF  +      +L+     
Sbjct: 1308 APDPLRHGKITLRAKTEHIYLYQCMLHSSSALLDEQKGAFARFASVGGPLARSLSHSSVF 1367

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-MKSEIERLS 1157
               E      ++ PK L D+ ESV GA+Y+D+   +  V  V   + M + +ER+S
Sbjct: 1368 PWAELTR---LQAPKILSDIVESVIGAVYIDARGDVVAVRGVLGRMGMWTMLERVS 1420



 Score = 53.9 bits (128), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 47/161 (29%), Positives = 74/161 (45%), Gaps = 21/161 (13%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF-- 1071
            YQRLE LGDA+L  ++  +LY +      G LT  R   V+N+  A  A++   + +   
Sbjct: 1053 YQRLESLGDAVLKLVVGAYLYSEHPLWHEGYLTQRRDHAVSNVRLAKSAIQKKLYRWIVR 1112

Query: 1072 KHLSPGLHEVIQRFV-KMQAENDFTLNQEYYLME-GECDEAEDIEVPKALGDLFESVAGA 1129
             H +P      +RF+ +   +N    N+E    E G     ED+   K L D+ ES+ GA
Sbjct: 1113 DHFAP------KRFMPRYLTDNRGATNEEENSDENGNGKGKEDLST-KVLADVVESLIGA 1165

Query: 1130 IYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLE 1170
             Y+  G          +E+  S I  + V +  SP+   +E
Sbjct: 1166 AYVHGG----------FELAISLIRTIDVHLALSPLSASIE 1196


>gi|402079303|gb|EJT74568.1| dicer-like protein 1 [Gaeumannomyces graminis var. tritici R3-111a-1]
          Length = 1607

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 167/426 (39%), Gaps = 102/426 (23%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPN----VHEGKLS 813
            N+  P +   +FQ  +    G + +RLE +GD FLK A TI L+          H  +++
Sbjct: 1125 NSDEPDEAPVNFQGGM----GKNYERLEFLGDCFLKMATTIALFTLMAGDEFEYHVERMT 1180

Query: 814  HLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASL 873
             + +K + N  L  +G QK      I +K   R  W P G                    
Sbjct: 1181 DICNKNLLNVAL-DMGLQK-----YIRSKSFNRRTWYPSG-------------------- 1214

Query: 874  WNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVE 933
                             L ++K K ++ D T                HS+ DKSIAD  E
Sbjct: 1215 -----------------LTLLKGKRLEADAT----------------HSLGDKSIADVCE 1241

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHL--------------------SD 973
            ALIGA  +    R +      + +K +  +T  ++  +                    S 
Sbjct: 1242 ALIGAAYLTGRERNSFD----MAVKAVTLLTRSQTHTMKSFAEYRAAYVKPEWQTVPASR 1297

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLIT 1030
            + L+   + +E + Y FKD   L  A  H SY   + N  +  YQRLEFLGDA+LD    
Sbjct: 1298 LQLELARRIKEKMGYEFKDARLLRSAFMHPSYPRVYENIPS--YQRLEFLGDALLDMTCI 1355

Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090
             HL+       P  LT+ + A+V+N  +  LAV LGFH     L   L   I  +V    
Sbjct: 1356 DHLFGRFPDRDPQWLTEHKMAMVSNQFYGCLAVELGFHRHVVCLKTQLQGQIADWVDRLG 1415

Query: 1091 ENDFTLNQEYY-LMEGECDEAEDIEV-----PKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            E      Q          D A +  V     PK L D+ E+  GA+++D+G     V   
Sbjct: 1416 ERRRRAEQAAVDAGRPAADFARNFWVDMEHPPKCLPDVLEAYVGALFVDAGYDYGAVEAF 1475

Query: 1145 YYEIMK 1150
            + E ++
Sbjct: 1476 WAEHVR 1481



 Score = 42.7 bits (99), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 108/482 (22%), Positives = 182/482 (37%), Gaps = 107/482 (22%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F   + LP +SPL RS TG    +K +A   AA   C  L E   LD  L    ++ + L
Sbjct: 733  FQGEVLLPESSPL-RSATGSIQRSKAVAKCSAAYAMCISLIEAGYLDAYLKSTFRKVLPL 791

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    V           S K+ Q+  +     +++    + T   L+A  + LT P  
Sbjct: 792  MRNARLAV----------SSKKKAQYDMQTKPDMWSD----LGTASRLFATALVLTNPEA 837

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFT---RCGEVEVSIELIDKNVVLS 216
              Q+ R             L +LT K IP+V S P+F    R  +V+  I L    +  +
Sbjct: 838  LLQDSRP------------LLLLTRKPIPQVASIPLFIAKRRRSDVQC-IPL--PPMETT 882

Query: 217  EENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSE---------QIVI 267
            E  L     F   +F  V         FD   ++  YF+ P +   E           ++
Sbjct: 883  EAGLLGLSSFTFCIFRDVFSKD-----FDGTAADLPYFLAPVMKGHEHAFSETVDSHALV 937

Query: 268  DWKFMTLISEHHNDVIQD---IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEI 324
            DW  +        D IQ    +P+   E   F + KF   V  P+  ++     F+++ +
Sbjct: 938  DWPAI--------DAIQTPNAMPDSNSEPDEFFQHKF---VADPFDGSR----KFFMSRV 982

Query: 325  MTNVHPRSMFPSRT-----NTYQTFEEYYSLKYGLQIQNLEQ-----------PLLDVDH 368
              ++ P+   P         +++T  E+  L Y + + +  +           P+++ + 
Sbjct: 983  RRDLTPQDKVPEDVPAPAHRSWRT-AEHTILNYSVSLWSKSRDAIIPRLRKDAPVVEAEL 1041

Query: 369  TSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSV 428
             S R N L          N A T+   R            LV E   I   P  +   + 
Sbjct: 1042 VSLRRNLLDQ--------NDAETAVPQR---------TCFLVLETLQISRLPVEVVSMAY 1084

Query: 429  SLPSILYRLNALLLA----DEIRTAVASEIGLGKVILD----EKVEWPPFNFGWKMKKLK 480
            + P+I+YRL   L+A    + +  ++  ++ L  V  D    ++ +  P NF   M K  
Sbjct: 1085 NFPAIIYRLENNLIALNCCNLLGLSIRPDLALEAVTKDSDNSDEPDEAPVNFQGGMGKNY 1144

Query: 481  EK 482
            E+
Sbjct: 1145 ER 1146


>gi|255589974|ref|XP_002535144.1| dicer-1, putative [Ricinus communis]
 gi|223523936|gb|EEF27239.1| dicer-1, putative [Ricinus communis]
          Length = 259

 Score =  102 bits (253), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/165 (37%), Positives = 92/165 (55%), Gaps = 15/165 (9%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             D  EE + Y+FK++S L +A T +S+     +  Y+RLE +GD++L+ L T+  Y    
Sbjct: 32   LDGVEEILKYKFKNRSLLEEAFTDSSFPGKCFS--YERLEHVGDSVLNLLFTKEHYFKYP 89

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
               PG LT LR+A V+    A +AV+ GFH F +H  P L E I+ F   QA  ++ L+ 
Sbjct: 90   NLPPGALTRLRAANVDTEKLARVAVKHGFHRFLRHKKPLLEEQIREF--SQAILEYPLHS 147

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
                          ++VPK L D+ ES  GA+++DS  S+DTVWK
Sbjct: 148  NGL-----------VDVPKVLADIVESAIGAVFIDSNSSVDTVWK 181


>gi|119478976|ref|XP_001259517.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
 gi|158706438|sp|A1DE13.1|DCL1_NEOFI RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
 gi|119407671|gb|EAW17620.1| RNase3 domain protein [Neosartorya fischeri NRRL 181]
          Length = 1538

 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 109/414 (26%), Positives = 168/414 (40%), Gaps = 88/414 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I LY   P+  E      R   + N NLF   
Sbjct: 1079 QIHFQRGMGKNYERLEFLGDCFLKMATSIALYTQNPDDDEFDYHVNRMCLICNKNLFNTA 1138

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K     + +  F  R  W P G                       L+L + K+ S + 
Sbjct: 1139 IKKQIYRYIRSRGFS-RHIWYPDG-----------------------LTLLHGKDHSKKL 1174

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG-- 947
            + E                           +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1175 LSE--------------------------GKHALGEKTIADVCEALIGASLLSGGPENRF 1208

Query: 948  --------ALL---------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
                    AL+         +  ++ L  +P     + +   D   D     EE + Y F
Sbjct: 1209 DMATKAVTALVDSPSHRVSCWKEYITLYTMPKYQTEKPRGSED---DLARHVEEELGYHF 1265

Query: 991  KDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
                 L  A+TH S          CYQRLEFLGD++LD +    L+       P  LT+ 
Sbjct: 1266 TYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLTEH 1325

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK----MQAENDFTLNQEYYLME 1104
            + A+V+N    +L+V+LGFH      S  L   I  +V+     QAE+   +  +Y+++ 
Sbjct: 1326 KMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIESAQAESRGAV--DYWVV- 1382

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                 A+D   PK L D+ E+  GAI++DS      +   +   +K   E +S+
Sbjct: 1383 -----AKD--PPKCLPDMVEAYLGAIFVDSKFDFQVIEVFFERQIKPFFEDMSI 1429


>gi|121807817|sp|Q2VF19.1|DCL1_CRYPA RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL-1; Includes: RecName:
            Full=ATP-dependent helicase DCL-1
 gi|77632774|gb|ABB00356.1| dicer-like protein 1 [Cryphonectria parasitica]
          Length = 1548

 Score =  101 bits (252), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 108/406 (26%), Positives = 161/406 (39%), Gaps = 84/406 (20%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            +FQP +    G + +RLE +GDSFLK A TI ++   PN  E      R   + N NLF 
Sbjct: 1074 NFQPGM----GANYERLELLGDSFLKMATTIAVFTLIPNKDEFDYHCERMVMICNQNLFG 1129

Query: 828  LGKQK--VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKEL 885
            + K       E + +  FE R  W P            +++  F  +      L  LK++
Sbjct: 1130 VAKSDDLKLHEYIRSKSFE-RGTWYP------------VLKLEFGKT-----HLKTLKQM 1171

Query: 886  SPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP 945
                                              +H + DKSIAD  EALIGA  +    
Sbjct: 1172 D---------------------------------EHRLADKSIADVCEALIGAAYMTTRK 1198

Query: 946  RG----ALLFMSWLGLKVIPPVTNPESKHLSDVL------------LDGFDKFEESINYR 989
                  A+  ++ L      P+T  +  H + V+            LD   K  E+  Y+
Sbjct: 1199 HDDYDLAVRAVTRLVNHKQHPMTKWDDYHAAYVMPGWQTMPANAAELDMAQKIHEATGYQ 1258

Query: 990  FKDKSYLLQAMTHAS--YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            FK    L  A  H S  Y  + +   YQRLEFLGDA+ D     +L+       P  LT+
Sbjct: 1259 FKHPRVLRSAFRHPSRPYVFDKVPH-YQRLEFLGDALFDMACVDYLFHIAPDEGPQWLTE 1317

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
             + A+V+N     LAV LGFH F  H    +   I  +V  +        ++     G+ 
Sbjct: 1318 HKMAMVSNQFLGCLAVSLGFHKFILHHHASIGSQIHEYV-TEITEARRAAEDAAEAAGKP 1376

Query: 1108 DEA-------EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
              A       E  + PK + D+ E+  GAI++DS      V + ++
Sbjct: 1377 RSAYSRDYWVEAPQPPKCIPDVLEAYVGAIFVDSKYDYSVVQQFFH 1422


>gi|300709179|ref|XP_002996756.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
 gi|239606080|gb|EEQ83085.1| hypothetical protein NCER_100079 [Nosema ceranae BRL01]
          Length = 1131

 Score =  101 bits (252), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 177/411 (43%), Gaps = 93/411 (22%)

Query: 766  SFDFQPDLENHTGP-SPKRLETIGDSFLKYAITIFLY--CTYPNVHEGKLSHLRSKQVSN 822
            SF  Q  L         +R E IGDS LKY+++ FL+  C Y   +  KL   +   V N
Sbjct: 779  SFTLQDSLNGQQNDLGYERFEFIGDSVLKYSVSKFLFTECGY---NLNKLVSTKDSLVCN 835

Query: 823  YNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL 882
             +L+++G+Q    +     ++     + PP          A+++  F  SL   L+L NL
Sbjct: 836  DHLYRVGRQINLQKYFSLNRYTEHL-FQPP----------AILDLEFDKSLIESLNLKNL 884

Query: 883  KELSPE-KVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLI 941
             + + +   +++  +K      + D N++               K  AD VE+LIG + I
Sbjct: 885  FQNNNQYNFVKLYSRKQ-----SQDTNLEK------------GKKVYADIVESLIGVHYI 927

Query: 942  ECGPRGALLFMSWLGLKVIPPVTNPESKHLSD---------VLLDGFD---------KFE 983
            E G + A     W  +K I  + N  SK  S+         +LL  ++         K E
Sbjct: 928  EQGFQKA-----WNFIKSIGILENHGSKRHSNNFMTKTPNIILLCEYEGILPLANILKVE 982

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTL-TDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            + INY FK+K Y+ +AM H SY  N   ++ +Q+LE +GD  LD  ++ +++       P
Sbjct: 983  KIINYTFKNKGYIEKAMIHPSYKDNIFGSERFQKLELVGDCFLDLKVSDYIFFKYTDADP 1042

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
             TL   R +LVNN  FA +  + G + F                       FT       
Sbjct: 1043 ETLHTHRKSLVNNHTFAMILFKSGLYDF----------------------SFT------- 1073

Query: 1103 MEGECDEAEDI---EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
              G  D+  D    +V K  GD+FE++AGA+ LDS    +     +  ++K
Sbjct: 1074 --GLSDQTRDFNNNKVSKCYGDIFEALAGAVILDSEFDFEMTDMFFKTVLK 1122


>gi|385047866|gb|AFI39694.1| dicer 2, partial [Daphnia pulex]
          Length = 200

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/181 (37%), Positives = 97/181 (53%), Gaps = 12/181 (6%)

Query: 39  MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKEL-DNDLMPVTKEFI 97
           +F C + LP NS L+  V G  MPTK LA R  A++A   L+ELKEL DN L PV +  +
Sbjct: 29  LFQCHLFLPXNSXLRDEVIGDVMPTKRLAKRAVALKASIKLHELKELDDNHLFPVPR--L 86

Query: 98  NLYENTEPVVPKTPEIETYPDSTKRR-QFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTC 156
           N+ ++      +  E    P   K     Y++R+  CF+NCRP    PC++YA+   L  
Sbjct: 87  NVIDDESST--EDEENSAAPQLNKENIAVYNRRLPGCFSNCRPLPGQPCFVYAIDFTLIK 144

Query: 157 PIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLS 216
           P  D       K++ P      LAILT+K IP +  FP+ TR GE  V++   D +V+L 
Sbjct: 145 PCLDIT-----KLYFPFAVDTKLAILTSKVIPAIXPFPVITRAGEFXVNLCXXD-SVILB 198

Query: 217 E 217
           +
Sbjct: 199 Q 199


>gi|310798327|gb|EFQ33220.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1532

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 105/397 (26%), Positives = 158/397 (39%), Gaps = 93/397 (23%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + ++LE +GD FLK A TI L+   P  +E      R   + N NLF     
Sbjct: 1069 NFQGGMGKNYEQLEFLGDCFLKMATTIALFTQNPEDNEFAYHVERMLLICNQNLFNKAVD 1128

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
            +   E + +  F+ R +W P G                                     L
Sbjct: 1129 RSLPEYVRSKSFD-RRSWYPSG-------------------------------------L 1150

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL-- 949
             +I+ K   L+                 +H++ DKSIAD  EALIGA  +          
Sbjct: 1151 RLIRGKEGSLN----------------HRHALADKSIADVCEALIGAAYLSYAETNNFDM 1194

Query: 950  --------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSY 995
                          L  SW         +  +S H + +  +   + +E++ Y FK  + 
Sbjct: 1195 AIRAVTAMVKNKNHLMTSWGDYYTAYTPSAWQSGHSTAMQKELARQIKENLGYEFKYPAL 1254

Query: 996  LLQAMTHASYFLNTLTDC--YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
            L  A  H SY      D   YQRLEFLGDA+LD +    L++      P  LT+ ++A+V
Sbjct: 1255 LRSAFKHPSY-PRAYEDLPNYQRLEFLGDALLDMVCVDFLFKKFPDADPQWLTEHKTAMV 1313

Query: 1054 NNIIFASLAVRLGFHHFFKHLSPGLHEVI---QRFV------KMQAENDFTLNQEYYLME 1104
            +N   A L V+LG H   KH+  G   ++   Q FV      K  A  D T +Q Y++  
Sbjct: 1314 SNQFLACLCVQLGLH---KHVLSGHASLLNQTQDFVGVLECAKQDAAADGTFSQCYWIHV 1370

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
             +         PK L D+ E+  GA+++DSG     V
Sbjct: 1371 KQA--------PKFLSDVVEAYIGALFVDSGYDYGQV 1399


>gi|83772763|dbj|BAE62891.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391869364|gb|EIT78563.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1374

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 170/430 (39%), Gaps = 97/430 (22%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+   P+  E      R   + N NLF   
Sbjct: 978  QIHVQRGMGKNYERLEFLGDCFLKMATSISLFVQNPDDDEFDFHVNRMCLICNKNLFNTA 1037

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   +   +  F  R  W                   +P  L       + K++S E 
Sbjct: 1038 LKKELYQYTRSRGFS-RHTW-------------------YPDGLTLLHGRDHRKKISAE- 1076

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
                                         ++H++ +K++AD  EALIGA L+     G L
Sbjct: 1077 -----------------------------SKHALREKTVADVCEALIGASLLS----GGL 1103

Query: 950  LFMSWLGLKVIPPVTN-PESKHL------SDVLL--------DGFD-----KFEESINYR 989
                 + +K +  V + P  K L      S  +L        DG++     K EE + YR
Sbjct: 1104 HNQFDMAVKAVTAVVDSPNHKALCWADYTSSYMLPKYQTQSPDGYELDLGRKVEEKLGYR 1163

Query: 990  FKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD- 1047
            FK    L  A TH SY        CYQRLEFLGD++LD +    L+       P  LT+ 
Sbjct: 1164 FKYPRLLHSAFTHPSYPSTWAKVPCYQRLEFLGDSLLDMVCVDDLFYRYPDKDPQWLTEH 1223

Query: 1048 -----------------LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--M 1088
                             L+ A+V+N    +LAV+LG H   +H S  L   I  + +   
Sbjct: 1224 KVSVRLFVSTKHLLTITLQMAMVSNKFLGALAVKLGLHTHLRHFSNPLQSQITHYAEEIQ 1283

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI 1148
             AEN+     +Y+L+    D  +    P  L D+ E+  GA ++DS      V   +   
Sbjct: 1284 AAENESQGAVDYWLVTK--DPPKVRRCPGCLPDMVEAYLGAAFVDSDFQFRVVEDFFQRH 1341

Query: 1149 MKSEIERLSV 1158
            +KS    +++
Sbjct: 1342 VKSYFHDMTI 1351



 Score = 43.1 bits (100), Expect = 0.94,   Method: Compositional matrix adjust.
 Identities = 100/430 (23%), Positives = 156/430 (36%), Gaps = 91/430 (21%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP  SP+ R +TG     K  A + AA + C +L + K LD+    V    +  
Sbjct: 584 FVCEVILPEKSPV-RGLTGVPASKKSAAKQSAAFDTCVLLRKHKLLDDHFNSVYHRRLPA 642

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N    +  T       D   +   + K+  +           P  L+A  +     IP
Sbjct: 643 MRNARLAI--TSSRTNQYDMLSKPSLWGKQQGTL----------PEKLFATVISF---IP 687

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCG-EVEVSIELIDKNVVLSEE 218
            E  +R  +          + +LT + +P   SF IF     E  V  E +++ + +S +
Sbjct: 688 SEPLRRRHR---------SIILLTRERLPDFPSFTIFLDDDIETIVVTESVEEALHISSQ 738

Query: 219 NLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT-------VSDSEQIVIDWKF 271
            L     F   +F  V     +   +     +  Y++ P        VSDS+ +  DW+ 
Sbjct: 739 ELEYLSTFTFRIFHDV-----FHKTYAEEPEKLPYWVAPAETKKSKNVSDSKSLT-DWEL 792

Query: 272 MTLISEHHNDVIQDIPEKERE----NFVFDESKFRDAVVMPW---YRNQFEPTYFYVAEI 324
           + L+  H N+ I        E     FVFD          PW   YR      YF +A I
Sbjct: 793 LHLV--HENEEIPSTLHPSSEALINRFVFD----------PWDGRYR------YFTMA-I 833

Query: 325 MTNVHPRSMFPSRTNTYQTFEEYYSLKYG---------LQIQNLEQPLLDVDHTSCRLNF 375
              +HP    PS     +  E   S             L   N +QP+L+V+    R N 
Sbjct: 834 DNTLHPSDPPPSFLPRRKFMESIMSYTLSGSKNARAGFLSRCNWQQPVLEVELVRLRRNL 893

Query: 376 LTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILY 435
           L       K +       ETR            +  E   I   P  +    ++ P+I+ 
Sbjct: 894 LDKMTDTEKDV-------ETR----------CFVCIEPLRISAIPEEIAASCLAFPAIIN 936

Query: 436 RLNALLLADE 445
           RL+A L+A E
Sbjct: 937 RLDAYLIALE 946


>gi|328770756|gb|EGF80797.1| hypothetical protein BATDEDRAFT_24696 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 1641

 Score =  101 bits (251), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 122/258 (47%), Gaps = 33/258 (12%)

Query: 916  NLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL------------------GL 957
            N+     I +K++A  +EA+IGA + E G   A L +S L                   +
Sbjct: 1209 NIRLNQEISNKTLAGSIEAVIGACVEEGGVEQAALAVSRLLSDEYETDWSNYHHDLYTSI 1268

Query: 958  KVIPPVTNPESKHLSDVLLD--GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
            +  P  T+    + S V +D     + EE I Y F+DK+ L +A+TH+      L   +Q
Sbjct: 1269 QASPSSTD---YYESVVHVDPIATKQIEEQIGYTFRDKTLLWEALTHSG--TGKLGSMFQ 1323

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDA+L YL  +HLY+     +PG L+ LR+ LV N   A +++++G   + +H  
Sbjct: 1324 RLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVKYIRHTD 1383

Query: 1076 PGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
              +   I RF       + +E+   L        +        +    PK  GD++ES+ 
Sbjct: 1384 MTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAPKTAGDVYESML 1443

Query: 1128 GAIYLDSGMSLDTVWKVY 1145
            GA+++DS   +  V  ++
Sbjct: 1444 GAVFVDSQFDIHCVQSMF 1461



 Score = 46.6 bits (109), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 30/80 (37%), Positives = 41/80 (51%), Gaps = 9/80 (11%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSK----QVSNYNLFKLGKQKV 833
            G S +RLET+GDSFLK   ++ L+C  P  +EG ++  R K    QV +      G Q  
Sbjct: 1133 GYSYERLETLGDSFLKIHQSLHLFCRNPFKNEGWMTQQRIKIEKNQVLHQKALDAGLQH- 1191

Query: 834  FGESMIATKFEPRDNWLPPG 853
                 I TK   + NW+PP 
Sbjct: 1192 ----FILTKPLTKRNWVPPA 1207


>gi|409046535|gb|EKM56015.1| hypothetical protein PHACADRAFT_122116 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1496

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 169/392 (43%), Gaps = 67/392 (17%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GDS LK    + L+  +P+ HEG+L  LR   VSN  L    K+ +  + + + 
Sbjct: 962  QRLETLGDSVLKLCTVVHLFNRFPHRHEGQLDILRRNSVSNRTLLARAKEVMLEQYLTS- 1020

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
              EP+                          +W          LS E          VDL
Sbjct: 1021 --EPQT-----------------------MRIWRF-------ALSGE----------VDL 1038

Query: 902  -DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
             D   D  V   +P           +S+ DC+EA +GA     G   AL   + LGL   
Sbjct: 1039 SDPMPDRFVSRRIP----------KRSLQDCMEASLGAGFATGGIMMALHVGTALGLGFG 1088

Query: 961  PPVTNPES-KHLSDVLLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLE 1018
              +  P     L +  +   F + +E + Y FK    L++A+TH S F +     YQRLE
Sbjct: 1089 GTLLWPARYDRLPETPVPVMFHEVQEILGYEFKSGHLLIEAVTHPS-FRSPTNSSYQRLE 1147

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPG 1077
            F+GDA++D ++ R+LY      + G L+  RS  V     A +AV  LG H      +  
Sbjct: 1148 FMGDALIDLVVMRYLYNKFPTATSGQLSWARSRAVCAPALAHIAVNVLGLHRPLLINNIE 1207

Query: 1078 LHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            L   I ++V +  E     ++E  +  G   +      PKA+ D+ ES+ GA+ +D+  +
Sbjct: 1208 LSMAISKYVPILQET----SEEEIIHSGWKHDP-----PKAISDVLESILGAVLVDTHYN 1258

Query: 1138 LDTVWKVYYEIMKSEIERLSVSVPKSPIRELL 1169
             +    +    ++  +  LS  +P+ P+ EL+
Sbjct: 1259 FEKTAVIAENALRGLLRVLSPDMPRDPVSELM 1290


>gi|298711900|emb|CBJ48587.1| dicer-like 3 [Ectocarpus siliculosus]
          Length = 1557

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 74/244 (30%), Positives = 113/244 (46%), Gaps = 53/244 (21%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKV------------------IPPV---T 964
            K+IAD VEAL+GA L+  G R A   M WLGL                    +P V   T
Sbjct: 1252 KTIADVVEALLGAALVAGGNRSAAYIMEWLGLAAASAAATAAAAGEDPAAPPLPEVYVAT 1311

Query: 965  NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL------TDCYQRLE 1018
             P ++ + ++ L      E+ + Y F+     +QA+TH S+ +N +         YQRLE
Sbjct: 1312 KPSARLMGNIRL-----LEKRLGYTFRYPWLCMQAITHPSWTINDIPPGTVPAQDYQRLE 1366

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLR--SALVNNIIFASLAVRLGFHHFFKHLSP 1076
            FLGDA+L +++T HLY    A +P  LT ++  S+ V N     +A+RL  HH  +  SP
Sbjct: 1367 FLGDAVLGWMVTAHLYFASSAFTPAELTRIKVTSSCVCNASLWVIALRLDVHHVLR-ASP 1425

Query: 1077 GLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
             +   I  F+    EN+                      PK   D+ E++ GA+++DS  
Sbjct: 1426 KILGHIHAFI----ENNGVSGTG--------------TAPKHPADVLEALIGAVFIDSSC 1467

Query: 1137 SLDT 1140
             ++ 
Sbjct: 1468 CMNA 1471


>gi|392596196|gb|EIW85519.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Coniophora puteana RWD-64-598 SS2]
          Length = 1520

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 83/265 (31%), Positives = 122/265 (46%), Gaps = 34/265 (12%)

Query: 919  TQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL-------------KVIPPVTN 965
             +   P +S+ DC+EA +GA     G   AL   + LGL             +V  P   
Sbjct: 1121 AKREFPRRSLQDCMEATLGAAFYHGGMDMALRAGTALGLSFGGELPWCARYGRVPDPSPA 1180

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            P            F++ +  + Y F     L++A TH S F  +    YQRLEFLGDA+L
Sbjct: 1181 PPL----------FEELQSGLGYEFHRGDLLVEAATHPS-FATSAGASYQRLEFLGDALL 1229

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKHLSPGLHEVIQR 1084
            D ++ R+L+      + G L+  RS  V     AS+AV RL  H      +  L   I R
Sbjct: 1230 DVVVMRYLFHKYPRATSGQLSVARSRAVCGPTLASVAVKRLNLHQILLINNVELSIAISR 1289

Query: 1085 FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
             V +  +N  T  QE  L      +A   + PKAL D+ ESV GA+ +DS  + +    V
Sbjct: 1290 HVPL-LQNLPT--QEIVL------KAWKYDPPKALSDIMESVFGAVLVDSAYNYEKAAAV 1340

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELL 1169
              E+M   +E +S SV + P+ +L+
Sbjct: 1341 VEEVMSEVLELISPSVARDPVTDLM 1365



 Score = 52.4 bits (124), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 23/50 (46%), Positives = 31/50 (62%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R ET+GDS LK  +T+ +   YP+ HEG+LS LR   VSN  L    K+
Sbjct: 1022 QRFETLGDSVLKLGVTVHIMNKYPHRHEGQLSKLRQSSVSNRTLLARAKE 1071


>gi|297834980|ref|XP_002885372.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297331212|gb|EFH61631.1| hypothetical protein ARALYDRAFT_479566 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 391

 Score =  100 bits (250), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 72/260 (27%), Positives = 127/260 (48%), Gaps = 19/260 (7%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--CYQRLEFLGDAILDYLITRHL 1033
            ++  +  E+ +NY+FK+KS L +A+TH S      TD   Y+RLEF+GD+ +   I+ +L
Sbjct: 57   MESMEALEKILNYKFKNKSLLKEAITHTS-----CTDFPSYERLEFVGDSAIGLAISNYL 111

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-KMQAEN 1092
            Y    +  P  L+ LR+A V+    A + +  G + F +  +P L E ++ F   +  E+
Sbjct: 112  YLTYPSLEPHQLSLLRAANVSTEKLARVTLNHGLYQFLRRNAPSLDEKVKEFSDAVGKED 171

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
            DF++                ++ PK L DLFESVAGA+Y+D    L  +W ++  +++  
Sbjct: 172  DFSVAY-----------GGLVKAPKVLADLFESVAGAVYVDVNFDLQRLWVIFRGLLEPI 220

Query: 1153 IERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            +    +     P+  L +L  ++ +    +   DG      + +  +    G   N  IA
Sbjct: 221  VTLDDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGNISIADIYLDDEFLASGRAENKDIA 280

Query: 1213 KCTAAKCALKHLKSAKPADV 1232
            +  AAK AL+ L    P ++
Sbjct: 281  RLIAAKEALRKLSEVFPVEM 300



 Score = 44.3 bits (103), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 22/50 (44%), Positives = 33/50 (66%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
           PS +RLE +GDS +  AI+ +LY TYP++   +LS LR+  VS   L ++
Sbjct: 90  PSYERLEFVGDSAIGLAISNYLYLTYPSLEPHQLSLLRAANVSTEKLARV 139


>gi|403419584|emb|CCM06284.1| predicted protein [Fibroporia radiculosa]
          Length = 1482

 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 106/406 (26%), Positives = 168/406 (41%), Gaps = 102/406 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LKY  TI L+  +P  HEG L+  +   VSN  L K    K   + +I  
Sbjct: 1023 QRLETLGDTVLKYVTTIQLFADHPLWHEGYLARRKDHAVSNIQLAKQAISKRLYQWIIRD 1082

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F PR  W P                       + ++  +++ +S E+ + +  +K    
Sbjct: 1083 RFVPR-KWRP-----------------------HYITDVDVQNVSTEETIPLDDKKK--- 1115

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMSWLGL 957
                                ++  K +AD VE+LIGA     G   A+    +F   L  
Sbjct: 1116 -----------------KTQALSTKVLADVVESLIGAAYEHGGFDLAVDCTSIFGMGLTW 1158

Query: 958  KVIPPVTNPESKHLSDVLL---------DGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
            K IP        H+ ++L                E  I Y+F  K+ L+QA+THASY  +
Sbjct: 1159 KKIP-------VHIENILAITEELENPPPQLALVERMIGYQFSRKALLVQALTHASYHGD 1211

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNIIFASLAVRL-- 1065
            T +  Y+RLEFLGD+ LD ++T  LY    + + PG +   + ALVN+   A + +R   
Sbjct: 1212 TASMSYERLEFLGDSALDMIVTDFLYHAPGKNYKPGHMHIRKEALVNSHFLAFICLRTHT 1271

Query: 1066 ---GFHHFFK--------------HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE-C 1107
               G  H +               HL   L     R +     +D  +    Y   G+  
Sbjct: 1272 DVDGISHRWTPAEGVTTTPDRQTIHLYQCLLHSSHRVL-----DDQNVAFGRYKRGGQDI 1326

Query: 1108 DEAED------------IEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
             +A D            ++ PK + D+ ES+ GA+++D+   L  V
Sbjct: 1327 QDALDRDAIYPWAALTSLQSPKFVSDMVESLLGAVFVDAAGDLGAV 1372


>gi|302901921|ref|XP_003048541.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
 gi|256729474|gb|EEU42828.1| hypothetical protein NECHADRAFT_95770 [Nectria haematococca mpVI
            77-13-4]
          Length = 1381

 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 160/388 (41%), Gaps = 87/388 (22%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LKY   I  Y  +P   EG L   + + VSN  L +   +    + +++ 
Sbjct: 937  ERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFKDQLVSNKRLHRACLESGLSKFILSK 996

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F  R                      +    W  L L    +  PE             
Sbjct: 997  AFTGR---------------------SYSGKKWKPLYL---DDFLPE------------- 1019

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS-WLGLKVI 960
                    +SV P + +T H    K++AD VEALIGA   + G   AL  +S +LG K  
Sbjct: 1020 --------ESVEPLDRITGH----KNLADVVEALIGASFQDGGMDKALKCISVFLGDKCH 1067

Query: 961  PPVTNPESKHLSDVLLDG------FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
                      L +  LDG       +  EE I Y F+ KS L++A+TH SY  +T    Y
Sbjct: 1068 WHEAGRGRDILFNSALDGVPLPPTLEPLEELIGYSFRKKSLLIEAVTHGSYAGDTHQRSY 1127

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN--IIFASLAVR-------- 1064
            ++LEFLGDA+LDY+I   ++  +       L  +++A+VN   + F +L  R        
Sbjct: 1128 EQLEFLGDAVLDYIIVTKVFNVKPPLPHSDLHLIKTAMVNGEFLAFVNLEHRLRRVETDV 1187

Query: 1065 ------------LGFHHFFKHLSPGLH----EVIQRFVKMQAE-NDFTLNQEYYLMEGEC 1107
                        L    F ++ SP +       ++RF  ++ E  D   N  +Y      
Sbjct: 1188 NADGVTEDTIKTLALWQFMRYTSPAIGNEQVRTVERFETLRREIVDAIENGTHY----PW 1243

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                  +  K   DLFE++ GA+++DSG
Sbjct: 1244 TLLARFQPKKFYSDLFEALIGAVWVDSG 1271



 Score = 40.4 bits (93), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 50/123 (40%), Gaps = 7/123 (5%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+RLEFLGD+IL Y      Y +      G L   +  LV+N       +  G   F   
Sbjct: 936  YERLEFLGDSILKYCTVIQAYAEHPLWPEGLLVPFKDQLVSNKRLHRACLESGLSKFI-- 993

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
            LS        R    +      L+   +L E   +  + I   K L D+ E++ GA + D
Sbjct: 994  LSKAF---TGRSYSGKKWKPLYLDD--FLPEESVEPLDRITGHKNLADVVEALIGASFQD 1048

Query: 1134 SGM 1136
             GM
Sbjct: 1049 GGM 1051


>gi|255577153|ref|XP_002529460.1| ribonuclease III, putative [Ricinus communis]
 gi|223531076|gb|EEF32926.1| ribonuclease III, putative [Ricinus communis]
          Length = 342

 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 70/250 (28%), Positives = 120/250 (48%), Gaps = 13/250 (5%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E+ +NY FK+K  + +A+TH+SY   T +  YQRLEF+GDA L   ++ H++       P
Sbjct: 11   EKILNYTFKNKQLVEEALTHSSY---TASPNYQRLEFIGDAALGLALSNHVFLAYPDLDP 67

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G L+ LR+A ++    A +AV+ G   F +H +  L + ++ F      +D  L +E   
Sbjct: 68   GHLSLLRAANISTEKLARVAVKHGLFRFLRHNATALDDKVKEF------SDAVLREE--- 118

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPK 1162
             +        ++ PK L D+ ESVA A+Y+D    L  +W ++  +++  +    +    
Sbjct: 119  -DEAVAHGGTVKAPKVLADIVESVAAAVYVDVNFDLQRLWVIFRGLLEPIVTPEDLQQQP 177

Query: 1163 SPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALK 1222
             P+  L EL  +  +         G +   ++ V G     G       AK  AAK AL+
Sbjct: 178  QPMTMLFELCQKKGKEVDIVHWKSGTKNIASIYVDGGFVASGSSEQKETAKLNAAKGALQ 237

Query: 1223 HLKSAKPADV 1232
             L    P+++
Sbjct: 238  KLSHLMPSNL 247


>gi|321463655|gb|EFX74669.1| hypothetical protein DAPPUDRAFT_251524 [Daphnia pulex]
          Length = 244

 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/174 (36%), Positives = 87/174 (50%), Gaps = 6/174 (3%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            L +G +K EE +NY F+ K+ LLQA+ + S  +     CY+RL  LGDA L  L     +
Sbjct: 36   LFEGLEKLEEILNYEFRYKNLLLQALIY-SRKIAVFRPCYERLH-LGDAFLGGLAAEMCF 93

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            +    + P  L++L+S LV N     L V+  FH F K L   +  +I  F K Q  N  
Sbjct: 94   DALPFYPPSVLSELKSVLVCNNSLGVLVVKFKFHKFLKRLPREIQTLIDTFAKKQKANGH 153

Query: 1095 TLNQEYYLMEGECDEAEDIEV----PKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                 YY +    +  ED       P  LGD+FES+AGA+Y DS  S+ T   V
Sbjct: 154  KFPSAYYEIVKLGNPPEDYAATNVPPDVLGDIFESIAGAVYKDSNYSMKTFRTV 207


>gi|294463153|gb|ADE77113.1| unknown [Picea sitchensis]
          Length = 173

 Score =  100 bits (249), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 58/157 (36%), Positives = 89/157 (56%), Gaps = 15/157 (9%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D   + E+ + Y+FK KS L +A+TH+S   N  T+ Y++LEF+GD++L YL+T+HLY  
Sbjct: 17   DSLSELEDILKYKFKSKSLLKEAITHSS---NNNTESYEKLEFVGDSVLGYLVTKHLYCA 73

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                  GTLT LRS  V+   FA + V+  FH +    +P L ++I+ FVK   +     
Sbjct: 74   YPKLYQGTLTLLRSRNVDTEKFARVCVKHKFHQYLLLNAPALQQIIEDFVKDIED----- 128

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   E +     D + PK L D+ ES+AGA+++D
Sbjct: 129  -------ESKSFRCGDFKPPKVLADIVESIAGAVFVD 158



 Score = 48.5 bits (114), Expect = 0.025,   Method: Compositional matrix adjust.
 Identities = 21/46 (45%), Positives = 31/46 (67%)

Query: 775 NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQV 820
           N+   S ++LE +GDS L Y +T  LYC YP +++G L+ LRS+ V
Sbjct: 45  NNNTESYEKLEFVGDSVLGYLVTKHLYCAYPKLYQGTLTLLRSRNV 90


>gi|302694007|ref|XP_003036682.1| hypothetical protein SCHCODRAFT_102832 [Schizophyllum commune H4-8]
 gi|300110379|gb|EFJ01780.1| hypothetical protein SCHCODRAFT_102832, partial [Schizophyllum
            commune H4-8]
          Length = 1489

 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 106/411 (25%), Positives = 171/411 (41%), Gaps = 43/411 (10%)

Query: 782  KRLETIGDSFLKYAITIFLYC-TYPNVHEGKLSHLRSKQVSNYNLFK----LGKQK-VFG 835
            +RLE  GD+FLKY  ++ L+  ++ N  EGKL   R   +SN  L +    LG    V G
Sbjct: 1013 ERLELYGDAFLKYLASLHLFVMSHHNDSEGKLHAARRPLISNQKLMECSLALGLPSFVIG 1072

Query: 836  ESMIATKFEPRDNWL-PPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEII 894
            +  +   + P +  + PPG    K  E    E G             + E  P     + 
Sbjct: 1073 KPFVIRFWGPANFRMNPPGGSAEKGKEK---EQG------------KVAETPPPASDAVG 1117

Query: 895  KQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW 954
              +            +   P +   Q  + DK++AD VEA++GA  +  G  G L     
Sbjct: 1118 ANQGEGGGGKKRRKKKKGEPNDGQIQQMLSDKALADVVEAILGAAHLSAGRDGGLQVAKA 1177

Query: 955  LGLKVI----------PPVTNPESKHLSDVLLDG-FDKFEESINYRFKDKSYLLQAMTHA 1003
            LGL V             V+   +      L  G  D  +  I  +      L  A+THA
Sbjct: 1178 LGLPVAKNADIWDDFKAQVSMHATPSAVSFLRPGTIDGVQSVIGQKLNKPELLALALTHA 1237

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            +   ++    Y+R+EFLGDA+LD+ +  ++Y       P  LT L+SA+V N   A++  
Sbjct: 1238 NN--SSPLGNYERIEFLGDALLDFQVVEYVYRKYTQQPPSVLTLLKSAMVGNSPLAAICA 1295

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLF 1123
              G    ++HL    H++ Q              +EY   + +  E        AL D+ 
Sbjct: 1296 ESG---LYRHLHQKSHQIQQSINTYLTALQKAKQKEYAAADDDLRERGQYWF-DALSDIV 1351

Query: 1124 ESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE---RLSVSVPKSPIRELLEL 1171
            ES+ GAIY+   +    V +++   ++   E   R++ ++   P + LLEL
Sbjct: 1352 ESIVGAIYISDDLEWTGVQQLFKHFLQPFYEKHIRMN-TLAVHPTKILLEL 1401


>gi|330913942|ref|XP_003296428.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
 gi|311331414|gb|EFQ95479.1| hypothetical protein PTT_06534 [Pyrenophora teres f. teres 0-1]
          Length = 1572

 Score =  100 bits (249), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 118/512 (23%), Positives = 204/512 (39%), Gaps = 105/512 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LG 829
            + ++  GP+ +RLE +GD FLK A ++ ++   P+ +E +    R + + N NL +  +G
Sbjct: 1088 NFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLLETAIG 1147

Query: 830  KQKVFGE----------SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSL 879
            K+KV             + I T    R  W P G                          
Sbjct: 1148 KKKVTSADGTERDIQLYNYIRTDSFSRRTWYPEG-------------------------- 1181

Query: 880  PNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
                       +++++ K V+         +S   +  +T H++ DKSIAD  EA IGA 
Sbjct: 1182 -----------MKLLRGKGVN---------KSEDDWLKLT-HNLGDKSIADVCEAFIGAA 1220

Query: 940  LIECGPRGALLFMSW-LGLKVIPPVTNPESKHLSD--------------------VLLDG 978
              E    G      W   +K +    N     +S+                     +LD 
Sbjct: 1221 FQEHYKGGRWNAADWDETVKAVKLFANSPDHEMSNWADYYAAYQMPKYQIADATAAMLDM 1280

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              K E    Y FK    L  A  H SY ++      YQRLEFLGD++LD     HLY   
Sbjct: 1281 ARKIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKY 1340

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFT 1095
                P  LT+ ++ +V+N    ++ V+LG+H + K  +  L   I+ +V    +AE +  
Sbjct: 1341 PDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAERESG 1400

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV-------WKVYYEI 1148
               +Y++           E PK L D+ E+   A+++D+      V        K ++E 
Sbjct: 1401 GAVDYWVTIS--------EPPKCLADVIEAYTAALFVDAEFDFSVVQDFFNLHLKPFFED 1452

Query: 1149 MKSEI-ERLSVSVPKSPIRELLELE--PENARFSKPEKLA----DGRRVRVTVEVFGKGS 1201
            M  +  E  + + P + +  +L +     + R    E        G+ +   + + GK  
Sbjct: 1453 MTLDAYENFASNHPTTRLSRILSINFGCNDWRMGALETETIIPDKGKAIAAMIMIHGKVH 1512

Query: 1202 YKGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
            +  +G++   A+  A+  AL+ L    P + +
Sbjct: 1513 FYSLGQSGRYARVRASHAALEKLDGLPPFEFR 1544



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 69/269 (25%), Positives = 111/269 (41%), Gaps = 47/269 (17%)

Query: 3   NAIFIVNRYCARLPS-DIFTRLAPIITISEIKEDDSI-----MFTCSIRLPINSPLKRSV 56
           +++ I+N + A LP  D  T L P   IS   + ++I      F C + LP  SP+  S+
Sbjct: 646 SSLSILNHFVATLPGPDRQTLLQPTYVISSEFQHNAIDPQRRGFVCEVILPEYSPVT-SI 704

Query: 57  TGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY 116
            G     K +A   AA + C  LY+   LD++L+P T  F NL      ++         
Sbjct: 705 IGDIQGKKTIAKCSAAFKTCLQLYKKGYLDDNLLPTT--FRNLPAGRNALLAL------- 755

Query: 117 PDSTKRRQFYHKRMASCFTNC-RPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
             S K++  Y   +   F    R +V T  YL  V +      P          H P   
Sbjct: 756 --SEKKKGMYSMLIKPNFWKLGRGTVPTHLYLTVVDLDSGLDRP----------HQP--- 800

Query: 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEEN----LSNTLIFMDYLF 231
              L +LT    P++ +FPI+   G           N+V    +    +S T++ +   F
Sbjct: 801 ---LGLLTRNPFPQLPNFPIYLTDGR--------PSNIVSQPSDTPLPVSETMLDVLTEF 849

Query: 232 TKVLKLKKYLMLFDPNCSENSYFIVPTVS 260
           T  +    Y   ++ +  + SY++VP VS
Sbjct: 850 TLRIYQDIYNKEYEKDVQKMSYWVVPVVS 878


>gi|213408108|ref|XP_002174825.1| dicer [Schizosaccharomyces japonicus yFS275]
 gi|212002872|gb|EEB08532.1| dicer [Schizosaccharomyces japonicus yFS275]
          Length = 1384

 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/247 (30%), Positives = 117/247 (47%), Gaps = 45/247 (18%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLK------------------VIPPVT 964
            + +K++AD VE+ +GA L + G   AL   + LGL                   ++P   
Sbjct: 1038 LANKTVADIVESSLGACLYDSGVDEALALGTRLGLNFYKTTKWDEWNSVFNVENLVPSAE 1097

Query: 965  NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC-YQRLEFLGDA 1023
            N   KH S +        E  + Y FK    L  A THASY   T T   YQ+LEFLGDA
Sbjct: 1098 NDCFKHASGL--------ESLVGYTFKHPGLLKIAFTHASYVKTTQTAVNYQQLEFLGDA 1149

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            +LD+++ R+L++  +  +   LTD +S  V N   A ++ +LG + F    +  +    +
Sbjct: 1150 VLDFIVVRYLFKKYQNKTAAELTDTKSFYVCNKSLAYVSFKLGLYDFMLQDNEDIRNAYK 1209

Query: 1084 RFV----KMQAE-----NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             +     K+Q +     N  T +++++L+         IE PK L D+FES   A+YLDS
Sbjct: 1210 EYKSVIDKLQQDTKIDSNHPTPSEKFWLL---------IEPPKFLSDIFESFVCAVYLDS 1260

Query: 1135 GMSLDTV 1141
            G     +
Sbjct: 1261 GFQFSAL 1267


>gi|225561826|gb|EEH10106.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1502

 Score =  100 bits (248), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 92/335 (27%), Positives = 144/335 (42%), Gaps = 53/335 (15%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGP--------RGALLFM-----------SWLGLKVI 960
            + ++ DK+IAD  EALIGA L+  G         +   +F+           S++ L  +
Sbjct: 1164 KQALGDKTIADICEALIGASLLSGGKACRFDTAVKAVTVFVDSDNHRVSDWNSYIDLYSL 1223

Query: 961  PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEF 1019
            P     ++       LD   +    + Y F     L  A THASY    +   CYQRLEF
Sbjct: 1224 PSYQIAQADAGQ---LDLAKQIGNRLGYYFTYPRLLRSAFTHASYPSAWSTVPCYQRLEF 1280

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGD++LD +   HLY       P  LT+ + A+V+N    ++AV+LG H    ++S  L 
Sbjct: 1281 LGDSLLDMVCVEHLYHHYPDRDPQWLTEHKMAMVSNKFLGAVAVKLGLHKHLLYISNALF 1340

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLDS 1134
              I R+            +E  +   E  ++ D      + PK L D+ E+  GAI++DS
Sbjct: 1341 GQITRYA-----------EEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVDS 1389

Query: 1135 GMSLDTVWKVYYEIMKSEIERLSVS---VPKSPIRELLELEPENARFSKPEKLADGRRVR 1191
              S + V   +   +K   E +S+      K P       E +    ++P       R+ 
Sbjct: 1390 NFSFEVVEDFFQRYLKQYFEDMSIYDAFANKHPTAG----EVQMVDSTEP-------RIY 1438

Query: 1192 VTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
              V V  K   +GI  +   AK  A++ AL  L+ 
Sbjct: 1439 AAVIVHDKFVAQGIASSVRYAKTKASEAALAKLEG 1473


>gi|398392319|ref|XP_003849619.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
 gi|339469496|gb|EGP84595.1| dsRNA-specific nuclease [Zymoseptoria tritici IPO323]
          Length = 1537

 Score =  100 bits (248), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 171/393 (43%), Gaps = 39/393 (9%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + +RLE IGD+FLK A TI  +   PN +E +    R + + N NLF+   +
Sbjct: 1065 NFQRGMGENYERLEFIGDTFLKTATTISTFIQNPNDNEFEFHVRRMQMLCNKNLFEHALE 1124

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W P G  +     T +I+                KE+   ++ 
Sbjct: 1125 YKLYEYIRSMAFN-RRTWYPEG--MKLMAGTGVIKG-------------QEKEMYHSEMT 1168

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY--LIECGPRGAL 949
             ++ +K +   C      ++++    +T +   +K      E  I A   L++      L
Sbjct: 1169 HVLGKKTIADVC------EALIGAAFLTHNQPDEKWQPHHWEPAIQAVTKLVKSDDHTML 1222

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
                +    ++P   + ++ H++ V  D  +K +    Y F     L  A +H S  +++
Sbjct: 1223 TMDDYKAAYLLP---DYQTAHVTAVQRDLAEKIQLEHAYSFNYPRLLYSAFSHPSNPYMH 1279

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                 YQRLEFLGDA+LD     +L+    A  P  LT+ + A+V+N    +L V +GFH
Sbjct: 1280 AQVPNYQRLEFLGDALLDQASISYLFYKFPAADPQWLTEHKMAMVSNKFLGALCVNIGFH 1339

Query: 1069 HFFKHLSPGLHEVIQRFVKMQAENDFTLN---QEYYLMEGECDEAEDIEVPKALGDLFES 1125
               +H    L + I  +V    E   +     ++Y+            + PK L D+ ES
Sbjct: 1340 KHLRHSHSSLGKQIHAYVDELVEARTSSGPDCRDYWTTVS--------DPPKCLPDVIES 1391

Query: 1126 VAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
              GA+++DS  +   V + + E +K   E +S+
Sbjct: 1392 FVGAMFIDSNFNFAEVQRFFEEHVKWYFEDMSI 1424



 Score = 45.1 bits (105), Expect = 0.25,   Method: Compositional matrix adjust.
 Identities = 108/490 (22%), Positives = 183/490 (37%), Gaps = 122/490 (24%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            NA+ I+  + + +PSD      P   IS   +     F   + LP NSP+ RSV G    
Sbjct: 628  NALSILAHFVSAVPSDSDEPQHPTCVISVTGQK----FLAEVLLPGNSPI-RSVLGRPEQ 682

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K LA   AA  AC  L + + LD  LMP+       Y+   P + +   + T  D TK 
Sbjct: 683  RKQLAKCSAAFNACLELRKKEYLDAHLMPI-------YQKKLPAM-RNALLATGMDKTK- 733

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPE------NSP 176
                                         M++   I  EQ    R I P +      + P
Sbjct: 734  --------------------------GFAMQVKPKIWAEQ----RGIVPSQLWITLVDFP 763

Query: 177  QGL-------AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDY 229
            QGL       A+LT   I ++  FP+F   G          K+  +   +LS  L     
Sbjct: 764  QGLDRPHRSFAMLTRSSILQLPKFPVFPSIG----------KSSDVVSASLSRPLEVTSQ 813

Query: 230  LFTKV--LKLKKYLMLFDPNCSEN----SYFIVPTV-------SDSEQI-------VIDW 269
            L  K+    L+ +L +F     E+    SY++VPT        +  ++I       VIDW
Sbjct: 814  LLAKLTAFTLRIFLDVFSKTYEEDDAKLSYWLVPTTIALHGDEASKDRIRSIDPREVIDW 873

Query: 270  KFM-TLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPW------YRNQFEPTYFYVA 322
              + ++     +     +P        F  +KF   +  PW      Y    + +     
Sbjct: 874  NLVESVFDNKEHKWTPGMPND------FLANKF---ITDPWDGSRKFYSKAVDGSLRQTD 924

Query: 323  EIMTN-VHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYV 381
            ++ ++ V PR+ +  +T    +   + +     Q  +  QP+++ +    R N L     
Sbjct: 925  DLPSDVVPPRAKWTGKTIMDYSVRLWKNADKKSQWHD-NQPVIEAEKVLLRRNML----- 978

Query: 382  NRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALL 441
                      +   ++E+  S+  K  + PE   I   P  L    +  P++++R+ A L
Sbjct: 979  ----------ASPDQQEV--SVSTKAYICPEPLRISAIPPELATSLLFWPAVIHRIEAYL 1026

Query: 442  LADEIRTAVA 451
            ++ E   +V 
Sbjct: 1027 ISIEGSASVG 1036


>gi|322801554|gb|EFZ22213.1| hypothetical protein SINV_16430 [Solenopsis invicta]
          Length = 209

 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 61/188 (32%), Positives = 100/188 (53%), Gaps = 15/188 (7%)

Query: 294 FVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353
           F F  S +  A+V P YR       + V ++  ++ P+S FP+    + T++ YY+ K+G
Sbjct: 21  FHFKSSDYELALVTPTYRGS---AVYVVTQVCDDLTPKSYFPNED--FDTYQHYYNEKHG 75

Query: 354 LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPEL 413
           L I NL Q +L+V     ++N++ PR +    +    T ++T  +++E L      VPEL
Sbjct: 76  LTIDNLRQSMLEVKPIPVKINYIKPRKLPEGPVKYKKT-DDTVEDLQEHL------VPEL 128

Query: 414 CLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFG 473
           C+   FP   W K+ +LPSIL+R+   L+A+++R  +A E  LG + L    E  P N  
Sbjct: 129 CMRINFPVVYWLKATTLPSILHRICQFLIAEDLRVTIARETKLGALTLK---ELSPLNIE 185

Query: 474 WKMKKLKE 481
              +KL E
Sbjct: 186 EDDEKLNE 193


>gi|340960215|gb|EGS21396.1| hypothetical protein CTHT_0032530 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1596

 Score = 99.8 bits (247), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 111/418 (26%), Positives = 160/418 (38%), Gaps = 95/418 (22%)

Query: 758  NTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRS 817
            NT         FQP + N+     +RLE +GD FLK A TI ++   P+  E +    R 
Sbjct: 1095 NTGEHDAEQISFQPGMGNNY----ERLEFLGDCFLKMATTIAIFTLIPDKEEFEYHVERM 1150

Query: 818  KQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCL 877
              + N NLF    +    E + +  F  R +W P                       N L
Sbjct: 1151 LLICNRNLFNNALEFKLEEYIRSMAFN-RHSWYP-----------------------NNL 1186

Query: 878  SLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937
            +L + K + P +                               H + DKSIAD  EALIG
Sbjct: 1187 TLKSGKTIQPRRT------------------------------HLLADKSIADVCEALIG 1216

Query: 938  AYLI-----------ECG---------------PRGALLFMSWLGLKVIPPVTNPESKHL 971
            A L+           E G               PR ++   S       PP    ++   
Sbjct: 1217 AALLTGQDRAGSTAPEQGAFDLAIRAVSTLVKSPRHSMSSYSEYYSLYTPPAW--QTAPC 1274

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLIT 1030
            S   +D   +F   + Y F+    L  A  H +Y  +      YQRLEFLGDA+LD  I 
Sbjct: 1275 SSAQVDMAARFACRLGYTFRHPRLLRSAFQHPTYPSVYEHLPSYQRLEFLGDALLDMAIV 1334

Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090
              L+       P  LT+ + A+V+N     L   LGFH      SP + + + R+V  + 
Sbjct: 1335 EWLFARFPGADPQWLTEHKMAMVSNQFLGCLGFMLGFHKNIACCSPQVGKDLARYVA-EM 1393

Query: 1091 ENDFTLNQEYYLMEG--ECDEAEDIEV-----PKALGDLFESVAGAIYLDSGMSLDTV 1141
            E      +E  +  G  E D A D  +     PK L D+ E+  GA+++DSG +   V
Sbjct: 1394 EEALLAAKEDAVRAGKTEDDWARDFWLNCSRPPKCLPDVVEAYVGAVFVDSGYNFGEV 1451



 Score = 55.8 bits (133), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 107/468 (22%), Positives = 167/468 (35%), Gaps = 88/468 (18%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
             A+ I+  + + LP    T LAP   I  +       F C + LP  SP+ RS TG   P
Sbjct: 663  QALVILANFVSSLPHPPETVLAPEYVICAVPGG----FQCEVMLPPQSPV-RSATGKVHP 717

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K +A   AA E C  L + K LD  L PV  + +    N    V           S K+
Sbjct: 718  RKAMAKCSAAFELCLKLIKGKYLDAHLRPVFTKQLPAMRNARLAV-----------SAKK 766

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
            +  Y  R+       R     P  LY   + L  P        GR+  P       L +L
Sbjct: 767  KAEYQMRIKPEMWARR---GEPKELYVTVLALENP-----GAVGRETMP-------LLLL 811

Query: 183  TTKYIPKVCSFPIFTRCG---EVEVSIELIDKNVVLSEENLSNTLI--FMDYLFTKVLKL 237
            T + +PK+  F +F   G     +V    +   +VL EE      +  F   +F  V   
Sbjct: 812  TREPLPKLAKFTLFYGQGPDRTSQVRCVPVPGRIVLDEEGREAKALAGFTLRVFHDVFSK 871

Query: 238  KKYLMLFDPNCSENSYFIVPT---------VSDSEQIVIDWKFMTLISEHHNDVIQDIPE 288
                  F+    +  YFI P          + +  + ++DW+ +  + E        IP 
Sbjct: 872  D-----FEARVGDLPYFIAPATKGHGEGFEIEEDVRGLVDWEVVFRVQEGDR-----IPY 921

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEI----MTNVHPRSMFPSRTNTYQTF 344
                   + +  F+   V+  Y    +  YF          T+  P  + P   + ++  
Sbjct: 922  DVDAAGEYADEFFKGHFVVDPYDGSRK--YFLRGRRHDMKATDTVPEGIVPP-GHAWRGV 978

Query: 345  EEYYSLKYGL---------QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEET 395
                 L Y L            N +QP+++ +    R N L          N+     E 
Sbjct: 979  STRDILNYSLTKWKRSREKTTLNPQQPVVEAELMPLRRNLLDD--------NIGEDDLEP 1030

Query: 396  RREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
                     K+  LV E   I P PA     + S P+I++R+ + L+A
Sbjct: 1031 ---------KQCFLVLEPLRISPLPAKTAMMAYSFPAIIHRIESNLIA 1069


>gi|147770295|emb|CAN62473.1| hypothetical protein VITISV_005321 [Vitis vinifera]
          Length = 287

 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 69/191 (36%), Positives = 101/191 (52%), Gaps = 23/191 (12%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH---LYEDERA 1039
            E+ + Y F +K  L +A THAS   N  +  Y+RLEF+GD++L  LIT+    LY D + 
Sbjct: 34   EQILGYSFTNKRLLEEAYTHASCQKNQFS--YERLEFMGDSVLSLLITKEQFFLYPDLQ- 90

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
              PG LT LRSA V+    A +A++ G H F +H  P + + I  F +   E     N +
Sbjct: 91   --PGRLTRLRSANVDKEKLARVALKHGLHRFLRHKKPKIEQQIYEFAEAIKEYPLHSNGQ 148

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                         IEVPK L D+ ES  GA+++D   S+DTV KV+  +++  I   ++ 
Sbjct: 149  -------------IEVPKVLADVVESTIGAVFVDCNCSVDTVXKVFKGLLEPMIVPETLK 195

Query: 1160 VPKSPIRELLE 1170
            V   P+ EL E
Sbjct: 196  V--HPVTELNE 204


>gi|189205613|ref|XP_001939141.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
 gi|187975234|gb|EDU41860.1| endoribonuclease dcr-1 [Pyrenophora tritici-repentis Pt-1C-BFP]
          Length = 1572

 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 119/512 (23%), Positives = 203/512 (39%), Gaps = 105/512 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LG 829
            + ++  GP+ +RLE +GD FLK A ++ ++   P+ +E +    R + + N NL +  +G
Sbjct: 1088 NFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLLETAIG 1147

Query: 830  KQKVFG----------ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSL 879
            K+KV             + I T    R  W P G                          
Sbjct: 1148 KKKVTSVDGTERDIKLYNYIRTDSFSRRTWYPDG-------------------------- 1181

Query: 880  PNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
                       +++++ K V+         +S   +  +T H++ DKSIAD  EA IGA 
Sbjct: 1182 -----------MKLLRGKGVN---------KSEDDWLKLT-HNLGDKSIADVCEAFIGAA 1220

Query: 940  LIECGPRGALLFMSW-LGLKVIPPVTNPESKHLSD--------------------VLLDG 978
              E    G      W   +K +    N     +S                      +LD 
Sbjct: 1221 FQEHYKGGRWNAADWDETVKAVKLFANSPDHEMSKWTDYYAAYQMPKYQIADATAAMLDM 1280

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              K E    Y FK    L  A  H SY ++      YQRLEFLGD++LD     HLY   
Sbjct: 1281 ACKIEAKHPYHFKYPRLLRSAFAHPSYPYIYENIPNYQRLEFLGDSLLDMAFITHLYYKY 1340

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFT 1095
                P  LT+ ++ +V+N    ++ V+LG+H + K  +  L   I+ +V    +AE + +
Sbjct: 1341 PDKDPQWLTEHKTPMVSNKFLGAVCVKLGWHVYIKQNTAILTSQIRDYVLEAQEAEREAS 1400

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV-------WKVYYEI 1148
               +Y++           E PK L D+ E+   AI++D+      V        K ++E 
Sbjct: 1401 SAVDYWVTIS--------EPPKCLADVIEAYTAAIFVDAEFDFSVVQDFFNMHLKPFFED 1452

Query: 1149 MKSEI-ERLSVSVPKSPIRELLELE--PENARFSKPEKL----ADGRRVRVTVEVFGKGS 1201
            M  E  E  + + P + +  +L +     + R    E        G+ +   + + GK  
Sbjct: 1453 MTLEAYENFASNHPTTRLSRILSINFGCNDWRMGALEMETLIPGKGKAIAAMIMIHGKVH 1512

Query: 1202 YKGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
            +  +G++   A+   +  AL+ L    P + +
Sbjct: 1513 FYSLGQSGRYARVRVSHAALEKLDGLPPFEFR 1544



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 105/462 (22%), Positives = 179/462 (38%), Gaps = 76/462 (16%)

Query: 3    NAIFIVNRYCARLPS-DIFTRLAPIITISE-----IKEDDSIMFTCSIRLPINSPLKRSV 56
            +++ I+N + A LP  D  T L P   IS      + +     F C + LP  SP+  S+
Sbjct: 646  SSLSILNHFVATLPGPDRQTMLQPTYVISSEVQRNVLDPQRRGFVCEVILPEYSPVT-SI 704

Query: 57   TGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETY 116
             G     K +A   AA + C  LY+   LD++L+P T   +    N    +         
Sbjct: 705  IGDVQGKKTIAKCSAAFKTCLQLYKKGYLDDNLLPTTFRSLPAGRNALLAL--------- 755

Query: 117  PDSTKRRQFYHKRMASCFTNC-RPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENS 175
              S K++  Y   +   F    R +V T  YL  V +      P          H P   
Sbjct: 756  --SEKKKGMYSMLIKPNFWKLGRGTVPTHLYLTVVDLDSGLDRP----------HQP--- 800

Query: 176  PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEEN----LSNTLIFMDYLF 231
               L +LT    P++ +FPI+   G           N+V    +    LS T++ +   F
Sbjct: 801  ---LGLLTRHPFPQLPNFPIYLTDGR--------PSNIVSQPSDTPLPLSETMLDVLTEF 849

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHN-DVIQDIPEKE 290
            T  +    Y   ++ +  + SY++VP VS     +    F+T I++  + D I  +  K 
Sbjct: 850  TLRIYQDIYNKEYEKDVQKMSYWVVPVVSSQ---MASLPFVTTINQILDMDQISRVYSKP 906

Query: 291  RENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS---RTNT--YQTFE 345
               +  D +K  D +   +         +YV  +  ++ P+   P    R N     +  
Sbjct: 907  TWKWTID-TKPEDLIDQYFVDPMNGGRRYYVNRLAPHLKPQDPVPKGIPRQNHKFMDSIL 965

Query: 346  EYYSLKY----GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRE 401
            +Y   K+     +   N  QP+L+V+    R N            +LA   ++ + E+ +
Sbjct: 966  DYSDSKWLKTRDISKWNPSQPVLEVEKIPFRRN------------HLARVEDKEKGELDD 1013

Query: 402  SLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
                K  + PE  LI             LP+I++R  + L+A
Sbjct: 1014 L---KTYVCPEPLLISNLATPFVVMCYVLPAIIHRFESYLIA 1052


>gi|393238576|gb|EJD46112.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Auricularia delicata TFB-10046 SS5]
          Length = 1427

 Score = 99.8 bits (247), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 105/440 (23%), Positives = 176/440 (40%), Gaps = 115/440 (26%)

Query: 747  PGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPN 806
            PG      I   T  P+   FD Q            RLET+GD+FLK  ++++ +  +P 
Sbjct: 951  PGIELNALIEATTLPPAMMGFDNQ------------RLETLGDAFLKLGVSVYAFHAFPF 998

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFG-ESMIATKFEPRDNWLPPGYFVPKYLETALI 865
             HEG+L+++R   +SN +L  L + + F  +  ++ +   R  W P              
Sbjct: 999  KHEGQLTNVRIPSISNKSL--LARARAFNLQRYLSVEVSSRRKWSP-------------- 1042

Query: 866  EAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPD 925
                         L N K   P + +    Q+CV+                         
Sbjct: 1043 ------------RLTNGKVEMPRRSM----QECVE------------------------- 1061

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGL-----------KVIPPVTNPESKHLSDV 974
                    AL+GA     G   AL     LGL           + + PV +P  + L   
Sbjct: 1062 --------ALLGAAFASGGVPCALAVGGKLGLCFGPPDKLWTERYVKPVPSPLRRPL--- 1110

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
                  + ++ + + F +++ LL+A+TH S   ++ T  Y+RLEFLGDA+LD  + ++L+
Sbjct: 1111 ----LHELQQRLGHEFANETLLLEAVTHRS-MQSSETPSYERLEFLGDALLDMAVMQYLF 1165

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAV-RLGFHHFFKHLSPGLHEVI----QRFVKMQ 1089
            +     + G L+  R   V N   A +A  RL  H         L +VI    Q  ++M 
Sbjct: 1166 KKYPQATCGQLSWARQRAVCNSTLAWIAATRLHVHECLLQNHIELAKVIDAARQELIEMS 1225

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
            AE                 +   +++PK  GDL E+V  A+++D G   +        ++
Sbjct: 1226 AEQVIR-------------DGWKMDMPKPPGDLVEAVFAAMFIDMGHDYERAAARICAVI 1272

Query: 1150 KSEIERLSVSVPKSPIRELL 1169
            +  +  LS  +P+ P  EL+
Sbjct: 1273 RDVLVLLSPDMPRDPSTELM 1292


>gi|46117132|ref|XP_384584.1| hypothetical protein FG04408.1 [Gibberella zeae PH-1]
          Length = 1451

 Score = 99.4 bits (246), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 162/390 (41%), Gaps = 96/390 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+E +GDS LKY   I  Y  +P   EG L+H + + VSN  L ++             
Sbjct: 1004 ERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRM------------- 1050

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                              LET L +  F                   K    IK + +  
Sbjct: 1051 -----------------CLETGLSKFIF------------------SKTFTGIKWRPLYR 1075

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMS---- 953
            D  +D       P + V++   P K++AD VEAL+GA   + G   AL    +F+     
Sbjct: 1076 DEFLDKK-----PVDGVSRFVGP-KTLADVVEALVGASYQDGGISKALECIKVFLGTKCN 1129

Query: 954  WLGLKVIPPVTNPESKHLSDVLLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            W   KV   +    +  +SDV L    +  EE I Y F+ KS L++AMTH SY  +    
Sbjct: 1130 WHDDKVARDILFRAA--ISDVPLPPTMEPLEELIGYTFQKKSLLIEAMTHGSYAADGQQR 1187

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH--- 1069
             Y++LEFLGDA+LDY++   +++ +     G L  +++A+ N    A   ++ G      
Sbjct: 1188 SYEQLEFLGDAVLDYIVVTRMFQSDPPVPNGRLHMVKTAMANADFLAFTNMQHGLRRPEV 1247

Query: 1070 -------------------FFKHLSPGLHEVIQ----RFVKMQAE-NDFTLNQEYYLMEG 1105
                               F +H SP +  ++     RF  +Q E N+   N ++Y    
Sbjct: 1248 EINENGEPVPTEVSLPIWKFMRHSSPEMGRIMNETQARFESLQEEINEARTNGKHY---- 1303

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                   +   K   D+FE+  GAI++DSG
Sbjct: 1304 PWTLLARLHPKKFYSDIFEATLGAIWVDSG 1333



 Score = 47.4 bits (111), Expect = 0.047,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+R+EFLGD++L Y      Y +      G L   +  LV+N     + +  G   F   
Sbjct: 1003 YERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRMCLETGLSKFI-- 1060

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S     +  R           L ++ +L +   D       PK L D+ E++ GA Y D
Sbjct: 1061 FSKTFTGIKWR----------PLYRDEFLDKKPVDGVSRFVGPKTLADVVEALVGASYQD 1110

Query: 1134 SGMS 1137
             G+S
Sbjct: 1111 GGIS 1114


>gi|322707759|gb|EFY99337.1| Dicer-like protein 2 [Metarhizium anisopliae ARSEF 23]
          Length = 1442

 Score = 99.0 bits (245), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 153/392 (39%), Gaps = 101/392 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LKY   I +   +P   EG LS  + + VSN  L +              
Sbjct: 1007 ERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVSNSRLSRAA------------ 1054

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          +   L   ++   F    W  L L N                    
Sbjct: 1055 --------------IDVGLAKFILTKTFTGQKWRPLYLENYTG----------------- 1083

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMS---W 954
                  N   V P  L T      K++AD VEALIGA  +  G   AL    LF++   W
Sbjct: 1084 ------NPGKVSPRKLST------KTLADVVEALIGASYVNGGITKALSCISLFVNEIQW 1131

Query: 955  LGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
              +     +    ++   D L       E  + Y+F  KS L++AMTH S   +     Y
Sbjct: 1132 QDVSANRALFFKMARD-QDKLPAELKPLEHLVGYQFNKKSLLIEAMTHQSCMFDYQRRSY 1190

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR---------- 1064
            + LEF+GDAILD++I R +Y  E   +P  +  L++A+VN    A L++           
Sbjct: 1191 EHLEFIGDAILDFIIVRKMYTAEPLLAPHQMHSLKTAMVNADFLAFLSLDHQMRRTETAV 1250

Query: 1065 -------------LGFHHFFKHLSPGL----HEVIQRFVKMQAENDFTLNQE----YYLM 1103
                         L    F +H S  +       ++R+  ++ E   TL Q     + L+
Sbjct: 1251 TSDLQIVDKETTPLALWTFMRHSSEAIGIEQATTLKRYEALRGEILATLRQGSHYPWALL 1310

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
             G       ++  K   D+FES+ GA+++DSG
Sbjct: 1311 AG-------LQAKKFYSDIFESLLGAVWVDSG 1335


>gi|403171531|ref|XP_003330752.2| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
 gi|375169221|gb|EFP86333.2| hypothetical protein PGTG_12289 [Puccinia graminis f. sp. tritici CRL
            75-36-700-3]
          Length = 1403

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 119/439 (27%), Positives = 183/439 (41%), Gaps = 88/439 (20%)

Query: 747  PGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPN 806
            P  S  HGI   T       +D+Q             LET+GD+FLK A ++ +Y     
Sbjct: 933  PAISLPHGIHALTPPGVGVPWDYQT------------LETVGDAFLKLATSVHVY----- 975

Query: 807  VHEGKLSHLRSKQVSNYNLFKLGKQKVFGES-MIATKFEPRDNWLPPGYFVPKYLETALI 865
                 +SHLR                  GE  M   +    DN          YL    +
Sbjct: 976  -----ISHLRK-----------------GEGDMSHVRARSIDN---------AYLRRKAV 1004

Query: 866  EAGFPAS-LWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIP 924
            +A  P S L         ++   E+  E+                      N      IP
Sbjct: 1005 QANLPGSILSQRFRTGKFRDAQTEEGKELA---------------------NGNFSRKIP 1043

Query: 925  DKSIADCVEALIGAYL----IECGPR-GALLFMSWLGL----KVIPPVTNPESKH--LSD 973
             + ++D VEAL+GA L    IE G + G  L + + G+    +    ++  +  H  L  
Sbjct: 1044 RRVLSDVVEALLGAGLLTGGIELGLKVGTALDLCFGGISPWSQRTLTISFGKDAHDKLDP 1103

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
             +L   ++ E  INY FK+K +L+QA+TH S   + LT+CY+R E+LGDA++D  I  H 
Sbjct: 1104 SMLLTCEQIERKINYVFKEKLFLVQALTHRSAN-SFLTNCYEREEWLGDAVIDMWIVEHA 1162

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVR-LGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            Y+     +   L+  R+ +  N     LA++ LG H F  H S   H+     +  +A  
Sbjct: 1163 YKRFDNATADELSLARAKVACNGSLGFLAIKKLGLHEFIMHKSDNFHQACAEAI--EAIE 1220

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
             FT   E++          D   PK L D  E++ GA+++DSG++L T ++V   I +  
Sbjct: 1221 PFTKISEFFSNINNLFVVFD--PPKILNDALEAIVGAVFVDSGLNLPTAYRVLDVIFEDV 1278

Query: 1153 IERLSVSVPKSPIRELLEL 1171
               LS    + P+  LL L
Sbjct: 1279 TPSLSRLAARDPVSTLLRL 1297


>gi|357118476|ref|XP_003560980.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
            distachyon]
          Length = 360

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 75/250 (30%), Positives = 122/250 (48%), Gaps = 22/250 (8%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + E  + YRF D++ L  A+TH S+     +  YQRLEFLGDA LD   +  LY      
Sbjct: 25   RVERLLQYRFHDRALLELALTHQSFSGGAAS--YQRLEFLGDAALDLAFSDFLYRANPTL 82

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF---VKMQAENDFTLN 1097
             PG LT LR+A ++    A +AVR   +   +   P L  ++ +F   VK + E+DF+  
Sbjct: 83   GPGELTTLRAANISTEKLARVAVRHDLYPLLRRACPPLDLLVGQFIELVKQELEDDFS-T 141

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
              Y    G C     ++ PK L D+ E++A A+Y+D    ++  WKV   + +  I   +
Sbjct: 142  APY----GGC----VVKAPKVLADIVEAIAAAVYMDCKSDIEKFWKVTRRLFEPLITVET 193

Query: 1158 V-SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKC 1214
            +   P S + EL +      +F + +K          +++F  G+  G+G +    IAK 
Sbjct: 194  MHEQPMSMLNELCQKHGMVPQFKESKKGE-----MTVIKIFVGGALVGMGSSEQRAIAKL 248

Query: 1215 TAAKCALKHL 1224
             A++ A+  L
Sbjct: 249  NASRDAVSKL 258


>gi|409042283|gb|EKM51767.1| hypothetical protein PHACADRAFT_150441 [Phanerochaete carnosa
            HHB-10118-sp]
          Length = 1556

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 176/428 (41%), Gaps = 74/428 (17%)

Query: 780  SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
            S +RLET+GD+ LKY +++ L+  YP  HEG L+  +   V+N  L K   +      +I
Sbjct: 1026 SYQRLETLGDTVLKYIVSVLLHAQYPLWHEGYLARRKDHAVNNNRLAKEALRLGLQTWII 1085

Query: 840  ATKFEPRDNWLPPGYFVPKYL----------------ETALIEAGF---PASLWNCLS-- 878
              +F  +        + P+Y+                E A  + G    PA   N  +  
Sbjct: 1086 RDRFAAKK-------WRPRYIGDAASAPASPVAENKNEGAAADIGKGDDPAGDDNVEAED 1138

Query: 879  LPNLKELS----PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEA 934
            + N K+       E   E+ + +  + +   D + +        TQ  +  K +AD VE+
Sbjct: 1139 VGNAKKAGEGNDKENGKEVAQGETTNGNKAADADKKKKKKKKAKTQ-ELSTKMLADVVES 1197

Query: 935  LIGAYLIECGPRGALLFMSWLGLKV-----IPPVTNPESKHLSDV--LLDGFDKFEESIN 987
            LIGA     G   A   M    L +     +P        H+ ++  L    +  E  + 
Sbjct: 1198 LIGAAYEHGGFDLATECMQLFHLGIDTWETVPACVEKSLGHIEELGELPPALELVERMVG 1257

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE-DERAHSPGTLT 1046
            Y+F  +  L++A+THASY     T  Y+RLEF+GDA+LD ++T  LY    + ++PG + 
Sbjct: 1258 YKFSKRVLLVEALTHASYTGVIETQSYERLEFIGDAVLDMIVTDFLYHVPGKNYTPGHMH 1317

Query: 1047 DLRSALVNN--------------------------IIFASLAVRLGFHHFFKHLSP---- 1076
              + ALVN+                          I+  +   R+       H SP    
Sbjct: 1318 LRKEALVNSHLLAFACMNTHVDVDASMPAWNAQDGIVLDTATQRIPLCRCLLHSSPRVLD 1377

Query: 1077 GLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
             L+    R+ K  A     L  +             ++ PK + D+FESV GAI+LDS  
Sbjct: 1378 DLNLTYARWEKHGAGIRRALEHDVIYPWAAL---TSLQAPKFVSDMFESVLGAIFLDSHG 1434

Query: 1137 SLDTVWKV 1144
             L TV  V
Sbjct: 1435 DLGTVRAV 1442


>gi|251765118|sp|Q6ATG6.2|RTL2_ORYSJ RecName: Full=Ribonuclease 3-like protein 2; AltName:
            Full=Ribonuclease III-like protein 2; Short=RNase
            III-like protein 2
          Length = 317

 Score = 98.6 bits (244), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 132/272 (48%), Gaps = 21/272 (7%)

Query: 962  PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
            PV  P    ++D   +   + E  + Y+F+D   L +A+TH S+  + ++  YQRLEF+G
Sbjct: 21   PVELPPPGFVAD-RAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVS--YQRLEFVG 77

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            D+ L    +  LY       PG L+ LR+A ++    A +AVR   +   +   P L  +
Sbjct: 78   DSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLL 137

Query: 1082 IQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            + +F   VK + E+D  L+   Y           ++ PK L D+ E++A A+Y+D    L
Sbjct: 138  VGQFIETVKQEPEDD--LSTVPY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDL 188

Query: 1139 DTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFG 1198
            + +WKV   + +  I   + ++ + P+  L EL  ++ + ++ +    G      V VF 
Sbjct: 189  EKLWKVTRWLFEPIIT--AETIDEQPVTMLHELCQKHGKMAQFKTWQKGG--MTVVNVFV 244

Query: 1199 KGSYKGIGRN--YCIAKCTAAKCALKHLKSAK 1228
             G   GIG +    IAK  AA+ A + L  AK
Sbjct: 245  AGELVGIGSSEQKVIAKLNAARDATRKLAGAK 276


>gi|367022572|ref|XP_003660571.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
            42464]
 gi|347007838|gb|AEO55326.1| hypothetical protein MYCTH_2299034 [Myceliophthora thermophila ATCC
            42464]
          Length = 1604

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 108/425 (25%), Positives = 161/425 (37%), Gaps = 101/425 (23%)

Query: 773  LENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
             +   G + +RLE +GD FLK A TI ++   P+  E +    R   V N NLF    + 
Sbjct: 1098 FQGGMGSNYERLEFLGDCFLKMATTISIFTLLPDKDESEYHIERMLLVCNRNLFNKALEV 1157

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
               E + +T F+ R +W P G                                     L 
Sbjct: 1158 KLEEYIRSTAFD-RRSWYPEG-------------------------------------LT 1179

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
            + + K  D+D                 +H + DK+IAD  EALIGA  +    R    F 
Sbjct: 1180 LKRGKRRDVD----------------GKHQLADKTIADVCEALIGAAYLTAQDRSPSDFD 1223

Query: 953  SWLGLKVIPPVTNPESKHLSD--------------------VLLDGFDKFEESINYRFKD 992
              L ++ +  +    +  +S                       +D   +F E + Y F+ 
Sbjct: 1224 --LAVRAVTVMVRDRNHAMSSYGDYYAAYRPAKWQTVPCSPAQIDMAARFRERMGYAFRH 1281

Query: 993  KSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
               L  A  H +Y  F   L   YQRLEFLGDA+LD      L+       P  LT+ + 
Sbjct: 1282 PRLLRSAFQHPAYPTFYEGLPS-YQRLEFLGDALLDMACVEFLFRRFPGADPQWLTEHKM 1340

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE- 1109
            A+V+N   A LAV LGFH    H S  +   +  FV  + E +    +E      E +E 
Sbjct: 1341 AMVSNQFLACLAVYLGFHKSIVHCSSQVQSEVAGFVA-EVEGELRAAKEGTEEGEEGEEE 1399

Query: 1110 --------------AEDIEV------PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                          A D  V      PK L D+ E+  GA+++DSG     V + + + +
Sbjct: 1400 EEEKKERGGEEEAFARDFWVRCARRPPKCLADVVEAYVGAVFVDSGYDFGEVRRFFADHV 1459

Query: 1150 KSEIE 1154
            +   E
Sbjct: 1460 RPFFE 1464



 Score = 65.1 bits (157), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 95/426 (22%), Positives = 164/426 (38%), Gaps = 76/426 (17%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C + LP +SP+ R+ TG    +K +A   AA E C  L +   LD  L P   + ++ 
Sbjct: 694  FQCEVTLPDSSPI-RNATGKVHESKAVAKCSAAYEMCLKLIKANYLDQHLRPTFTKQLHA 752

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    V           S K++  Y+ R+     +   +V  P  LYA+ + L+ P  
Sbjct: 753  MRNARLAV-----------SAKKKGRYNMRVKPEIWS---AVGEPVELYALALTLSDP-- 796

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDK 211
                  GR   P       L +LT + + ++ SFP++         RC  V  S+EL D+
Sbjct: 797  ---TVLGRPSSP-------LLLLTRQPVQEIPSFPLYFGSNRFSAVRCVPVPGSLELDDR 846

Query: 212  NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP---------TVSDS 262
             +   +   + TL     +F+K          ++   ++  YFI P         T +D 
Sbjct: 847  QI---QGLAAFTLAVFKDVFSKE---------YEATVAQLPYFIAPTKLEHSSGFTAADG 894

Query: 263  EQIVIDWKFMTLI--SEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFY 320
               V+DW  ++ +  +EH      ++ +  R+ +V D         +   R+   PT   
Sbjct: 895  PSCVVDWATISFVRENEHIRYTFDELDDFFRDKYVCDPYDGSRKFFLRRRRHDLRPTDPV 954

Query: 321  VAEIMTNVHPRSMFPSRTNTYQTFE-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPR 379
               ++   H     P        +    +    G      +QP+++ +    R NFL   
Sbjct: 955  PEGVVAPGHRAWRVPGGNRDILNYSLSAWRRSRGSMTLREDQPVVEAELLPIRRNFL--- 1011

Query: 380  YVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNA 439
                         +  R +  E   K   LV E   I P P  +     + PSI++R+++
Sbjct: 1012 ------------DDNIRDDDLEP--KPCFLVLEPLRISPLPVDVVAMVYTFPSIMHRIDS 1057

Query: 440  LLLADE 445
             L+A E
Sbjct: 1058 NLVALE 1063


>gi|169868762|ref|XP_001840952.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
 gi|116498110|gb|EAU81005.1| hypothetical protein CC1G_03181 [Coprinopsis cinerea okayama7#130]
          Length = 2074

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 184/455 (40%), Gaps = 108/455 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LK+   I ++  YP  HEG L+  +   V+N  L K   ++     +I  
Sbjct: 1509 QRLETLGDTVLKFLAGIQIFAEYPMWHEGYLTKRKDHAVANVRLAKECVKRGVVRWII-- 1566

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL-----------KELSPEKV 890
                RD  L   +  P+Y+  A    G P    +   +P++           KE+  ++ 
Sbjct: 1567 ----RDRLLGKKW-KPRYITKADPSRGEPM---DVDPIPDVVKRDKPKDTGAKEIGAKET 1618

Query: 891  ------LEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHS------------IPDKSIADCV 932
                  +++ K +  + +  +D + + +     V                +  K +AD +
Sbjct: 1619 SVSDAEMKVDKGEESNAEAKIDDDGKGLKAETKVQGEKKKKKKNKQANKQLSTKVLADVI 1678

Query: 933  EALIGAYLIECG-PRG---ALLFMSWLGLKVIPPVTN--------------PESKHLSDV 974
            E+LIGA  I  G P G   A  F   LGLK  P  T               P    L+DV
Sbjct: 1679 ESLIGAAYISGGFPLGYECAKFFD--LGLKWAPLPTRVDQILSRVQPEDDIPIPPQLADV 1736

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
                    E  + Y FK K  L++A+THASY  +  T  Y+R+EF+GD+ILD ++T  LY
Sbjct: 1737 --------EHMLGYTFKRKILLIEALTHASYREHINTISYERMEFIGDSILDMVVTDMLY 1788

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFA-----------------SLAVRLGFHHFFKHLSPG 1077
               R +SPG +   RSA+VN    A                 S +   G   +  +L+P 
Sbjct: 1789 RAPREYSPGHIHLRRSAVVNGHFLAYICLGMWRELEGVMPQPSASSNAGKDDWNPYLNPP 1848

Query: 1078 LHE---VIQRF--------VKMQAENDFTLNQEYYLMEGE--CDEAED-----------I 1113
              E      R            Q  +D     E Y +  E   D  E            +
Sbjct: 1849 TFEEGTTAHRIHLSQCLLHSSQQVLDDLRNTVERYELRREEIADALEHGSIFPWSSLTRL 1908

Query: 1114 EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI 1148
            + PK L D+ ES  GA ++DSG S+  V  +   I
Sbjct: 1909 QAPKFLSDIVESTIGAAFIDSGFSIPVVTSIIRRI 1943


>gi|145540581|ref|XP_001455980.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
 gi|74834199|emb|CAI44479.1| Dicer-like ribonuclease with helicase and Rnase III domains
            [Paramecium tetraurelia]
 gi|124423789|emb|CAK88583.1| unnamed protein product [Paramecium tetraurelia]
          Length = 1797

 Score = 98.2 bits (243), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 112/424 (26%), Positives = 174/424 (41%), Gaps = 97/424 (22%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKF 843
            LE +GD+ LK   +I ++  +P  +E  L   R++ VSN NL K      F   +  T F
Sbjct: 1327 LEFLGDANLKLLSSIEVFVQFPFANEHLLHLERARIVSNENLRKFSIIHRFFNCIKCTNF 1386

Query: 844  EPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDC 903
            +    + PP + + K                   +   L E+ PEK  E   ++      
Sbjct: 1387 D----YSPPEFLLDK-------------------NTQELSEIQPEKQKE--NKENTKYQY 1421

Query: 904  TVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGP--RGALLFMSWLGLKVIP 961
            T +  V + +P N      IP+K  +D VEAL GA+LI+          F+  +G+   P
Sbjct: 1422 TQNGEVITELPKNY---QPIPEKVHSDVVEALNGAFLIQYDEDINACQFFLHRIGVLKYP 1478

Query: 962  ----PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY------------ 1005
                 + N  +     +L    +  E  I Y+F D+S L+QA+TH S+            
Sbjct: 1479 LAQVKLKNSTTLQAKGLLQKNLNSLENIIGYKFNDQSILIQAITHQSFLSVLDFYNYRKC 1538

Query: 1006 ------FLNT------------------LTD----------CYQRLEFLGDAILDYLITR 1031
                  F NT                  LT            Y+RLEFLGD++LD ++  
Sbjct: 1539 KCNFVEFQNTKNILQISNLNQNDINESLLTQLNQQQNRIDMSYERLEFLGDSVLDSVVVE 1598

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAE 1091
             L ++        L   +  +V N   A + +      F  H  P LH+V         E
Sbjct: 1599 WLVKEFNKEKVEDLALKKQCVVCNKALALVTLHYKLDQFLLH--PTLHKVAH-------E 1649

Query: 1092 NDFTLNQ------EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
            N  TLN+      EYY    +   +E I   K LGD+FES+ GAI++DS  + D   +V 
Sbjct: 1650 NHQTLNKIKQMYNEYYDDISKMYTSEPI--IKILGDVFESIVGAIFVDSSFNYDLTKQVV 1707

Query: 1146 YEIM 1149
            ++++
Sbjct: 1708 FKLL 1711


>gi|408394282|gb|EKJ73491.1| hypothetical protein FPSE_06330 [Fusarium pseudograminearum CS3096]
          Length = 1451

 Score = 97.8 bits (242), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 158/390 (40%), Gaps = 96/390 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL----GKQK-VFGE 836
            +R+E +GDS LKY   I  Y  +P   EG L+H + + VSN  L ++    G  K +F +
Sbjct: 1004 ERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRMCLETGLSKFIFSK 1063

Query: 837  SMIATKFEP--RDNWL--PPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            +    K+ P  RD +L   P   V +++    +     A +   L   + ++    K LE
Sbjct: 1064 TFTGIKWRPLYRDEFLDKKPVDGVSRFIGPKTL-----ADVVEALVGASYQDGGISKALE 1118

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
             IK                     L T+ +  D  +A C+                 LF 
Sbjct: 1119 CIK-------------------IFLGTKCNWHDDKVARCI-----------------LFR 1142

Query: 953  SWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            +      +PP   P                EE I Y F+ KS L++AMTH SY  +    
Sbjct: 1143 AATSDVPLPPTMEP---------------LEELIGYTFEKKSLLIEAMTHGSYAADGQQR 1187

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA------------- 1059
             Y++LEFLGDA+LDY++   +++ +     G L  +++A+ N    A             
Sbjct: 1188 SYEQLEFLGDAVLDYIVVTRMFQSDPPVPNGRLHMVKTAMANADFLAFTNMQHGLRRPEV 1247

Query: 1060 ---------SLAVRLGFHHFFKHLSPGLHEVIQ----RFVKMQAE-NDFTLNQEYYLMEG 1105
                     S  V L    F +H SP +  ++     RF  +Q E N+   N ++Y    
Sbjct: 1248 AINDDGEPVSTEVSLPIWKFMRHSSPEMGRIMNETQARFESLQGEINEARTNGKHY---- 1303

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                   +   K   D+FE+  GAI++DSG
Sbjct: 1304 PWTLLARLHPKKFYSDIFEATLGAIWVDSG 1333



 Score = 47.0 bits (110), Expect = 0.062,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 51/124 (41%), Gaps = 12/124 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+R+EFLGD++L Y      Y +      G L   +  LV+N     + +  G   F   
Sbjct: 1003 YERIEFLGDSVLKYCTVIQAYSEHPFWPEGLLNHFKDRLVSNTRLTRMCLETGLSKFI-- 1060

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             S     +  R           L ++ +L +   D       PK L D+ E++ GA Y D
Sbjct: 1061 FSKTFTGIKWR----------PLYRDEFLDKKPVDGVSRFIGPKTLADVVEALVGASYQD 1110

Query: 1134 SGMS 1137
             G+S
Sbjct: 1111 GGIS 1114


>gi|18402610|ref|NP_566661.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
 gi|75274109|sp|Q9LTQ0.1|RTL2_ARATH RecName: Full=Ribonuclease 3-like protein 2; AltName:
            Full=Ribonuclease III-like protein 2; Short=RNase
            III-like protein 2; AltName: Full=Ribonuclease three-like
            protein 2
 gi|9294562|dbj|BAB02825.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642855|gb|AEE76376.1| RNAse THREE-like protein 2 [Arabidopsis thaliana]
          Length = 391

 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 17/259 (6%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--CYQRLEFLGDAILDYLITRHL 1033
            ++  +  E+ +NY+F +KS L +A+TH S      TD   Y+RLEF+GD+ +   I+ +L
Sbjct: 57   MESMEAVEKILNYKFSNKSLLKEAITHTS-----CTDFPSYERLEFIGDSAIGLAISNYL 111

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            Y    +  P  L+ LR+A V+    A +++  G + F +  +P L E ++ F +   + D
Sbjct: 112  YLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKED 171

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
              L+  Y  +         ++ PK L DLFES+AGA+Y+D    L  +W ++  +++  +
Sbjct: 172  -DLSVSYGGL---------VKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIV 221

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK 1213
                +     P+  L +L  ++ +    +   DG      + +  +    G   N  IA+
Sbjct: 222  TLDDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIAR 281

Query: 1214 CTAAKCALKHLKSAKPADV 1232
              AAK AL+ L    P ++
Sbjct: 282  LIAAKEALRKLSEVFPVEM 300



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           PS +RLE IGDS +  AI+ +LY TYP++    LS LR+  VS   L ++ 
Sbjct: 90  PSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVS 140


>gi|346970337|gb|EGY13789.1| RNase3 domain-containing protein [Verticillium dahliae VdLs.17]
          Length = 1563

 Score = 97.8 bits (242), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 106/409 (25%), Positives = 167/409 (40%), Gaps = 98/409 (23%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            DFQ  + N+     +RLE +GD FLK A TI L+   P+ +E +    R   + N NLF 
Sbjct: 1103 DFQAGMGNNY----ERLEFLGDCFLKMATTIALFTRIPDSNEFECHVERMLLICNQNLFN 1158

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
            +  +K   E + + +F+ R +W                   +P  L              
Sbjct: 1159 VALKKNLQEYIRSKQFD-RRSW-------------------YPQGL-------------- 1184

Query: 888  EKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
                   KQK        +              HS+ DKSIAD  EA+IGA  +     G
Sbjct: 1185 -------KQKAGKAQGAQN-------------SHSLADKSIADVCEAIIGASYLSYTDEG 1224

Query: 948  ALLFMSWLGLKVIPPVTNPESKHLSD-----------------VLLDGFDKFEESINYRF 990
                M+   +  +    N + K   D                 V ++   + +E + Y F
Sbjct: 1225 NF-DMAVRAVTAVVRNKNHDMKSYEDYYKAFKMPIWQAAEPSAVQMEASLQIKEQMGYEF 1283

Query: 991  KDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            K  + L  A  H SY     ++ + YQRLEFLGDA+LD +    L+       P  LT+ 
Sbjct: 1284 KSPALLRSAFKHPSYPRQFESVPN-YQRLEFLGDALLDMVCVDFLFRKFPDADPQWLTEH 1342

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV----------KMQAENDFTLNQ 1098
            + A+V+N    SL+V LGF+    H +  +   I+ +V          +  A+   T+++
Sbjct: 1343 KMAMVSNHFLGSLSVELGFYRRVLHFNSIMANQIKDYVDALTHARQEAEAVAQISGTVSR 1402

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
            +Y+L             PK L D+ E+  GAI++DSG     V + ++E
Sbjct: 1403 DYWLNVK--------HPPKFLSDVVEAYIGAIFVDSGYDYGQV-QAFFE 1442



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 72/323 (22%), Positives = 129/323 (39%), Gaps = 58/323 (17%)

Query: 23  LAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYEL 82
           L+P   +S I  +    + C ++LP  SP+  SV+G     K  A   AA E C  L + 
Sbjct: 687 LSPSYMVSLIGSE----YICEVQLPSKSPI-LSVSGTLQKNKAEARCSAAFEMCMKLIKG 741

Query: 83  KELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVN 142
             + + L P     +    N    +           S+K+R+ Y+ R+     + R   +
Sbjct: 742 GFISSHLQPTFTRKLPAMRNARLAI-----------SSKKRERYNMRVKPEVWSRRGPAS 790

Query: 143 TPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI-FTRCGE 201
           +   L+   +KL  P        G    P     Q LA+LT + +P++   P+ F  CG 
Sbjct: 791 S---LFLTVLKLRTP--------GALNRPS----QPLALLTREALPELPGVPLFFGNCGR 835

Query: 202 VEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSD 261
               +  + K + L E  L +  +F   +F  V     +  ++D   ++  YF+ P   D
Sbjct: 836 SIAEVVSVAKPMHLDEVRLDSLRVFTLRIFKDV-----FSKVYDSQVADLPYFLAPAAHD 890

Query: 262 SEQ---------IVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRN 312
                        +IDW  +    E     ++ +P  E  +  F +SKF   V+ P+  +
Sbjct: 891 HSHEFSPNEDPGSLIDWSHLLSTKE-----VEYLPWDEDHSPSFYQSKF---VIDPYTGS 942

Query: 313 QFEPTYFYVAEIMTNVHPRSMFP 335
           +      ++  I T++ P  + P
Sbjct: 943 R----KLFLRGIRTDLKPTDLVP 961


>gi|403361874|gb|EJY80651.1| Dicer-2 protein [Oxytricha trifallax]
          Length = 1140

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 124/453 (27%), Positives = 194/453 (42%), Gaps = 101/453 (22%)

Query: 784  LETIGDSFLKYAITIFLYCTYPN---VHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            LET GD+ LK A T+  Y    N     EG++ + +   V+N+++F++G   +  + M  
Sbjct: 646  LETYGDTILKLAATMLAYYQKRNDKKAGEGEIENSKVCFVTNFHIFRVGNNLMLQKYMKT 705

Query: 841  TKFEPRDNWLPP------GYFVPKYLET--------ALIEAGFPASLWNCLSLPNLKELS 886
             +      W+PP        FVP             +LI A + +S  NCL    L+ +S
Sbjct: 706  KRDSEYKQWVPPMSTDKDQQFVPNQCVGKNVADCVESLICALYLSS--NCLHTV-LRWIS 762

Query: 887  PEKVLEIIKQKCVDL-----DCT-----------VDMNVQSVVPYN---LVTQHSIPD-- 925
              K++ + K   +D      DCT           + +  QS   +N   +V + ++P   
Sbjct: 763  EIKLVPLDKSTMLDYIEKGTDCTFRLYSPLHDYKLQIQDQSKDLFNKFFMVEKENVPSNF 822

Query: 926  KSIADC------VEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGF 979
            K +         V+ L  AY +    +G  L    L                  VLL+  
Sbjct: 823  KDMLQLRFETLEVDELGSAYDLCRYLKGEYLIKKAL------------------VLLE-- 862

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNT-LTDCYQRLEFLGDAILDYLITRHL----- 1033
            D  E  +NY+FK+   L++A+TH S      +  CY++LE LGD+ILDYL    L     
Sbjct: 863  DLQENVLNYKFKNPLLLIEALTHKSAKDQLEINLCYEKLEVLGDSILDYLCNYSLIYYTM 922

Query: 1034 -----------YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF-FKHLSPGLHEV 1081
                       Y+ E   +P      +S LV N + A + V LG H + F   + GL + 
Sbjct: 923  FERYIEKDPVQYQIEEHFTPSDAHQSKSLLVKNELLAKITVLLGIHKYIFYQDTLGLFDK 982

Query: 1082 --IQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
              +  ++K     +F LNQ          E E  E PK LGD+FES+ GAI++D GM  +
Sbjct: 983  KEVSDYLKYSFRPNFRLNQR---------EVELFECPKLLGDVFESLMGAIFIDGGM--N 1031

Query: 1140 TVWKVYYEIMKS---EIERLSVSVPKSPIRELL 1169
             V +V+  ++      I + S  + K P  E L
Sbjct: 1032 AVIQVFRNLVGPFVLFIAQFSKKLYKEPKEEFL 1064


>gi|146324173|ref|XP_753471.2| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|129558032|gb|EAL91433.2| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1546

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 160/414 (38%), Gaps = 100/414 (24%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   PN  E      R   + N NLF   
Sbjct: 1099 QIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTA 1158

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K     + +  F  R  W P G                       L+L + K+ S + 
Sbjct: 1159 IKKQIYRYIRSRGFS-RHIWYPDG-----------------------LTLLHGKDHSTKL 1194

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR--- 946
            + E                           +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1195 LSE--------------------------GKHALGEKTIADVCEALIGASLLSGGPEHRF 1228

Query: 947  -------GALL---------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
                    AL+         +  ++ L  +P     + +   D   D     EE + Y F
Sbjct: 1229 DMATKAVSALVDSPSHRVSCWKEYITLYTLPKYQTEKHRGSED---DLARHVEEELGYHF 1285

Query: 991  KDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
                 L  A+TH S          CYQRLEFLGD++LD +    L+       P  L++ 
Sbjct: 1286 TYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEH 1345

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK----MQAENDFTLNQEYYLME 1104
            + A+V+N    +L+V+LGFH      S  L   I  +V+     QAE+           +
Sbjct: 1346 KMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAES-----------Q 1394

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            G C           L D+ E+  GAI++DS      +   +   +K   E +S+
Sbjct: 1395 GAC-----------LPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSI 1437


>gi|159126799|gb|EDP51915.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1546

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 105/414 (25%), Positives = 160/414 (38%), Gaps = 100/414 (24%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   +   G + +RLE +GD FLK A +I L+   PN  E      R   + N NLF   
Sbjct: 1099 QIHFQRGMGKNYERLEFLGDCFLKMATSIALFSQNPNDDEFDYHVNRMCLICNKNLFNTA 1158

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K     + +  F  R  W P G                       L+L + K+ S + 
Sbjct: 1159 IKKQIYRYIRSRGFS-RHIWYPDG-----------------------LTLLHGKDHSTKL 1194

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR--- 946
            + E                           +H++ +K+IAD  EALIGA L+  GP    
Sbjct: 1195 LSE--------------------------GKHALGEKTIADVCEALIGASLLSGGPEHRF 1228

Query: 947  -------GALL---------FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
                    AL+         +  ++ L  +P     + +   D   D     EE + Y F
Sbjct: 1229 DMATKAVSALVDSPSHRVSCWKEYITLYTLPKYQTEKHRGSED---DLARHVEEELGYHF 1285

Query: 991  KDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
                 L  A+TH S          CYQRLEFLGD++LD +    L+       P  L++ 
Sbjct: 1286 TYPRLLASAITHPSLPSTWGYRVPCYQRLEFLGDSLLDMVCVEDLFRRFPDRDPQWLSEH 1345

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK----MQAENDFTLNQEYYLME 1104
            + A+V+N    +L+V+LGFH      S  L   I  +V+     QAE+           +
Sbjct: 1346 KMAMVSNKFLGALSVKLGFHRRIMAFSNPLQAQITHYVEEIETAQAES-----------Q 1394

Query: 1105 GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            G C           L D+ E+  GAI++DS      +   +   +K   E +S+
Sbjct: 1395 GAC-----------LPDMVEAYLGAIFVDSKFDFQVIEAFFERQIKPFFEDMSI 1437


>gi|451856503|gb|EMD69794.1| hypothetical protein COCSADRAFT_341850 [Cochliobolus sativus ND90Pr]
          Length = 1575

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 202/498 (40%), Gaps = 85/498 (17%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LG 829
            + ++  GP+ +RLE +GD FLK A ++ ++   P+ +E +    R + + N NL +  +G
Sbjct: 1087 NFKSGMGPNYERLEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLMETAVG 1146

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
            K+KV          +           + KY+ T      F    W            PE 
Sbjct: 1147 KKKVVSAEGTEQDLQ-----------LYKYIRTE----SFSRRTW-----------YPEG 1180

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
             L+++K K  +         +S   +  +T H++ DKSIAD  EA IGA L E    G  
Sbjct: 1181 -LKLLKGKGAN---------KSQDDWLKLT-HNLGDKSIADVCEAFIGAALQEHYTGGLW 1229

Query: 950  LFMSW-LGLKVIPPVTNP--------------------ESKHLSDVLLDGFDKFEESINY 988
                W   +K +    N                     ++   S  +LD   K E    Y
Sbjct: 1230 KPTDWDEAVKAVKLFANSPDHTMSKWSDYYEAYQKPKYQTADASAAMLDMAQKIEMKHPY 1289

Query: 989  RFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
             FK    L  A  H SY ++      YQRLEF GDA+LD     HLY       P  LT+
Sbjct: 1290 HFKYPRLLRSAFAHPSYPYMYENIPSYQRLEFAGDALLDMAFITHLYFKYPDKDPHWLTE 1349

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFTLNQEYYLMEG 1105
             ++ +V+N    ++ V+LG+H   K  +  L   I+ +V    +AE +     +Y++   
Sbjct: 1350 HKTPMVSNKFLGAVCVKLGWHVHIKQNTATLTNQIRDYVLEAEEAEREAGGAVDYWVTIS 1409

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK--------SEIERLS 1157
                    + PK L D+ E+   +I++DS      V   +   +K           E  +
Sbjct: 1410 --------DPPKCLADVIEAYVASIFVDSEFDFGVVQTFFEMHLKPFFLDMTLDSYENFA 1461

Query: 1158 VSVPKSPIRELLELE--PENARFSKPEKL----ADGRRVRVTVEVFGKGSYKGIGRNYCI 1211
             + P + +  LL +     + R    E        G+ +   V + GK  +  +G++   
Sbjct: 1462 SNHPTTRLSRLLTINFGCNDWRMGALETETVIPGKGKAIAAMVLIHGKVHFYSLGQSGRY 1521

Query: 1212 AKCTAAKCALKHLKSAKP 1229
            A+  A++ AL+ L+   P
Sbjct: 1522 ARVRASQAALEKLEGLPP 1539


>gi|336270596|ref|XP_003350057.1| hypothetical protein SMAC_00946 [Sordaria macrospora k-hell]
 gi|380095449|emb|CCC06922.1| unnamed protein product [Sordaria macrospora k-hell]
          Length = 1586

 Score = 97.4 bits (241), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 158/402 (39%), Gaps = 80/402 (19%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GDSFLK A T+ +Y   P+  E +    R   + N NL    
Sbjct: 1087 QVNFQTGMGDNYERLEFLGDSFLKMATTMSIYTLIPDKGEFEYHVERMLLICNKNLLNNA 1146

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E + +  F  R  W                   +P  L                
Sbjct: 1147 LEVGLEEYIRSMSFN-RRQW-------------------YPEGL---------------- 1170

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
            VL+  K K                  +  T+H + DKSIAD  EALIGA  +    +G+ 
Sbjct: 1171 VLKKGKNK------------------DARTRHVLADKSIADVCEALIGAAYLTGQEKGSF 1212

Query: 950  ----------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDK 993
                              M++     +    + ++   +    D  DKF E + Y+FK  
Sbjct: 1213 DMAIKAVTAMVRDKKHRMMNYGDYYAVYQKPSWQTAPANSAQRDMADKFSERMGYKFKHP 1272

Query: 994  SYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
              L  A  H +Y  L      YQRLEFLGDA+ D +   +L+    A  P  LT+ + A+
Sbjct: 1273 RLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQWLTEHKMAM 1332

Query: 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-----KMQAENDFTLNQ----EYYLM 1103
            V+N     L+  LGF+     +SP + + I  +V      ++A     +NQ    E Y  
Sbjct: 1333 VSNQFLCCLSYHLGFYKCVATMSPSILKDIAEYVTEIEEALEAAKQEAVNQGKAPEEYSR 1392

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
            +          +PK L D+ E+  GAI++DS      V + +
Sbjct: 1393 DYWVHITHVSRLPKCLSDVVEAYIGAIFVDSEYDYSVVQQFF 1434



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 180/474 (37%), Gaps = 103/474 (21%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M + I + N + A LP    T L+P   I+ +       F C + +P  SP+K +V G  
Sbjct: 652  MQSLICLAN-FTATLPHPPETSLSPEYYITTVPGG----FQCEVVMPDASPIKSAV-GKI 705

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
              +K  A   AA E C  L +   LDN L  V  + +    N    V           S+
Sbjct: 706  HVSKGAAKCAAAFELCLALLKAGHLDNHLQSVFTKQLPEMRNARLAV-----------SS 754

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            K++  Y  R+     + R  V     LYA    L  P     + RGR   P       L 
Sbjct: 755  KKKTEYAMRLKPELWSVRGEVTQ---LYATAFFLENP-----DARGRSSRP-------LL 799

Query: 181  ILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDKNVVLSEENLSNTL-IFMDYLF 231
            +L+   +P+V SFP+F         RC  ++ S+E  D    L E+    T+  FMD +F
Sbjct: 800  LLSRSGLPEVASFPLFFGTKRFSKVRCVPIQGSVEAED---TLVEQLTRFTMKAFMD-VF 855

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPT---------VSDSEQIVIDWKFMTLISEHHNDV 282
            +K          ++   ++  YF+ P          ++ S   +ID K +  +S +    
Sbjct: 856  SKE---------YEATAADLPYFLSPMDGGHGFDFRLAKSPADLIDRKTLAYVSGN---- 902

Query: 283  IQDIPEKERENFVFDESKFRDAVVMPWY-----------RNQFEPTYFYVAEIMTNVHPR 331
                 EK    F+  +  F+D  ++  Y           R+  +PT      I+   H  
Sbjct: 903  -----EKVPYTFLEPDEFFQDKFIVDPYDGARKFFTRHRRHDMKPTDPVPDGIVQPNHRA 957

Query: 332  SMFPSRTNTYQTFE-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
                  T+    +    ++   G  +   +QP+++    S R +FL    ++        
Sbjct: 958  WKGLGTTHDILNYSNSLWAKSRGFMVFQADQPVVEARLISTRRDFLDDAILD-------- 1009

Query: 391  TSEETRREIRESLGKKQ-LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
                      E L  +   L  E   I P PA +    +  PSI++R+ + L+A
Sbjct: 1010 ----------EDLEPQPCFLALEPLRISPIPADVAAMLLCFPSIIHRVESNLVA 1053


>gi|17511264|gb|AAK68755.2| Unknown protein [Arabidopsis thaliana]
 gi|20148705|gb|AAM10243.1| unknown protein [Arabidopsis thaliana]
          Length = 391

 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 127/259 (49%), Gaps = 17/259 (6%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--CYQRLEFLGDAILDYLITRHL 1033
            ++  +  E+ +NY+F +KS L +A+TH S      TD   Y+RLEF+GD+ +   I+ +L
Sbjct: 57   MESMEAVEKILNYKFSNKSLLKEAVTHTS-----CTDFPSYERLEFIGDSAIGLAISNYL 111

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            Y    +  P  L+ LR+A V+    A +++  G + F +  +P L E ++ F +   + D
Sbjct: 112  YLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKED 171

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
              L+  Y  +         ++ PK L DLFES+AGA+Y+D    L  +W ++  +++  +
Sbjct: 172  -DLSVSYGGL---------VKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIV 221

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK 1213
                +     P+  L +L  ++ +    +   DG      + +  +    G   N  IA+
Sbjct: 222  TLDDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGNVSIAVIYLDDELLASGRAENKDIAR 281

Query: 1214 CTAAKCALKHLKSAKPADV 1232
              AAK AL+ L    P ++
Sbjct: 282  LIAAKEALRKLSEVFPVEM 300



 Score = 43.9 bits (102), Expect = 0.52,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 32/51 (62%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           PS +RLE IGDS +  AI+ +LY TYP++    LS LR+  VS   L ++ 
Sbjct: 90  PSYERLEFIGDSAIGLAISNYLYLTYPSLEPHDLSLLRAANVSTEKLARVS 140


>gi|325185579|emb|CCA20062.1| Dicerlike 1 (DCL1) putative [Albugo laibachii Nc14]
          Length = 1609

 Score = 97.4 bits (241), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 97/415 (23%), Positives = 169/415 (40%), Gaps = 104/415 (25%)

Query: 777  TGPSPKRLETIGDSFLKYAITIFLYCTYPNV-HEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
            + P+ +R E +GD+FLK   + ++Y    ++  EG LS LR   + N  L +    K   
Sbjct: 1209 SKPAYERCEVLGDTFLKLETSWYMYQMRRDIPDEGTLSMLRRDIIRNDRLCQFSLLKELH 1268

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
              ++                 P  LE        P S W     P+    +P+ +     
Sbjct: 1269 HYIV----------------YPAELEQ------HPFSCWK----PSCMGKTPQSI----- 1297

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
                                      + P K IAD +EA+ GAY+I  G +GA  F++W+
Sbjct: 1298 --------------------------NAPSKWIADVLEAICGAYIIGHGEKGARYFLNWV 1331

Query: 956  GLKVI---------------PPVTNPES-KHLS---------DVLLDGFDKFEESINYRF 990
            G+ V+               P    PE+ KH+          + L+      E+ + YRF
Sbjct: 1332 GIHVLDDSFEFSKRFYPDCYPKTLFPEAFKHVGKWKFSILHHETLVKKMRLLEQRLCYRF 1391

Query: 991  KDKSYLLQAMTHASY-FLNTLTD---------CYQRLEFLGDAILDYLITRHLYEDERAH 1040
            ++K  LL+A+TH S   L  + D          Y+RLE+LGDA+++YL   + +      
Sbjct: 1392 RNKLLLLEAITHPSVRRLEIVMDNEKRVSWQGNYERLEYLGDALIEYLTVSYAFLAHDTW 1451

Query: 1041 SPGTLTDLRSALVNNIIFASLAVR---------LGFHHFFKHLSPGLHEVIQRF-VKMQA 1090
             PG+L++ ++A V+N      A+          LG   F + +   +  + +++ V    
Sbjct: 1452 LPGSLSNWKAATVSNDALGKTAIACFGVDEAICLGHVQFDREIMNKIKTIPRKYAVDYNV 1511

Query: 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
            +     +      +  C     + +PK L D+ E++  A++LDSG  L  +  V+
Sbjct: 1512 DTIQPGHSRNSTTKSNCT-TNLLALPKILADVMEALVAAVFLDSGKDLGIIRDVF 1565


>gi|240275432|gb|EER38946.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H143]
          Length = 495

 Score = 97.1 bits (240), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 147/344 (42%), Gaps = 52/344 (15%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            + ++ DK+IAD  EALIGA L+  G   A  F +   +K +    + ++  +SD      
Sbjct: 75   KQALGDKTIADICEALIGASLLSGGK--ACRFDT--AVKAVTVFVDSDNHRVSDWNSYID 130

Query: 974  --------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLE 1018
                            LD   +    + Y F     L  A THASY    +   CYQRLE
Sbjct: 131  LYSLPSYQIVQADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLE 190

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
            FLGD++LD +   +LY       P  LT+ + A+V+N    ++ V+LG H    ++S  L
Sbjct: 191  FLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNAL 250

Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLD 1133
               I R+            +E  +   E  ++ D      + PK L D+ E+  GAI++D
Sbjct: 251  FGQITRYA-----------EEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 299

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSV------SVPKSPIRELLELEPENARF---SKPEKL 1184
            S  S + V   +   +K   E +SV        P +     L ++   A +   +   ++
Sbjct: 300  SNFSFEVVEDFFQRYLKQYFEDMSVYDAFANKHPTTYFHNRLTIDFGCANYCLKAGEVQM 359

Query: 1185 ADGR--RVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
             D    R+   V V  K   +GI  +   AK  A++ AL  L+ 
Sbjct: 360  VDSTEPRIYAAVIVHDKFVAQGIASSVRYAKTKASEAALAKLEG 403


>gi|347440705|emb|CCD33626.1| hypothetical protein [Botryotinia fuckeliana]
          Length = 984

 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 193/480 (40%), Gaps = 66/480 (13%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GD FLK   +I LY   P+  E +    R   + N NLF   
Sbjct: 507  QTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSDEFRYHVDRMCLICNKNLFNTA 566

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    + + +  F  R  W P G   P+ L      A            PN  +L  + 
Sbjct: 567  LKLELYKYIRSAAFN-RRAWYPEG---PELLRGKTATA------------PNTHKLGDKS 610

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
            V ++                ++++   L++ H    KS+ + V A+    ++      A+
Sbjct: 611  VADV---------------CEAMIGAALLSHHE--SKSMDNAVRAV--TEVVNSDNHNAV 651

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
            ++  +  L   P     ++   +   +D   + E    Y FK    L  A  H +Y F+ 
Sbjct: 652  VWSDYYKLYEKPKW---QTATATAAQIDMARQVEMKHPYHFKHPRLLRSAFIHPAYLFIY 708

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CYQRLEFLGD++LD      L+ +     P  LT+ + A+V+N    +L V+LGFH
Sbjct: 709  EQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLTEHKMAIVSNQFLGALCVKLGFH 768

Query: 1069 HFFKHLSPGLHEVIQRFVK------MQAENDFTLNQEYYLMEGECDEAEDIEV-----PK 1117
                 L   + ++I  +        +QA+ D        + + E D A D  +     PK
Sbjct: 769  KHLLTLDSQVQKMIADYSSDINEALIQAKTDAK-----RVGKVEDDYARDYWIAVRQPPK 823

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV---SVPKSPIRELLELEPE 1174
             L D+ E+  GAI++DS      V K +   ++   E + +      K P   L     +
Sbjct: 824  CLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYDTYANKHPTTFLTNFLQK 883

Query: 1175 N------ARFSKPEKLADGRR--VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            N      A  SK     DGR+  V   V +  K        +   A+  AA+ AL+ L+ 
Sbjct: 884  NMGCEDWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAESMRYARVGAARNALRKLEG 943



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 168/441 (38%), Gaps = 102/441 (23%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C   LP  +P+ R   G    TK +A   AA E C +L++   +++ L+   K   ++
Sbjct: 102 FICEAILPEEAPI-RGAIGRPATTKQVAKCSAAFETCVILHQKGYINDYLLSTFKRSAHM 160

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N    V    + E Y   TK   +  K     F           Y+  + +K     P
Sbjct: 161 MRNALLAVDGKKQ-EAYDMQTKPTLWSSKGKQGIF-----------YMTVLSLK----SP 204

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDK 211
           D  ++          + Q L +LT   +P +  F +         T C  +  SI L +K
Sbjct: 205 DNLDR----------ASQPLGLLTRSPLPDLPEFVLHFGAGRNSPTSCVPLASSITL-EK 253

Query: 212 NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKF 271
           N  L + N+    +F D +F+K  K        DP+     YF+VP   +    ++DWK 
Sbjct: 254 NK-LDQVNMFTLCLFQD-VFSKAYKS-------DPDSM--PYFLVPI--NCLNAIVDWKS 300

Query: 272 ---MTLISEHHNDVIQDIPEKE------------------RENFV---FDESKFRDAVVM 307
              M++I     + +QD   K+                  ++ F+   FD S+   +V +
Sbjct: 301 QNPMSIIDWETVEYVQDFENKQADKPWEHKPWLGKPDDYFKDKFITDPFDGSRKLWSVGI 360

Query: 308 PWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNL---EQPLL 364
                  +P       +  N  PR    +R N     E   SL    + +     EQP++
Sbjct: 361 TKEYRPLDP-------VPPNTAPRK--GARKNNSNIMEYSCSLWAKARAKRTFDEEQPVI 411

Query: 365 DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLW 424
           +  + S R N L        G  L T+             KK  ++ E   + P P ++ 
Sbjct: 412 EATYISLRRNLLD----EFDGGELETS-------------KKCFIILEPLKVSPLPTTVV 454

Query: 425 RKSVSLPSILYRLNALLLADE 445
             +  LP+I++R+ + L+A E
Sbjct: 455 AMAYLLPAIIHRVESYLIALE 475


>gi|158706454|sp|Q0CW42.2|DCL1_ASPTN RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl1; Includes: RecName:
            Full=ATP-dependent helicase dcl1
          Length = 1519

 Score = 96.7 bits (239), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 102/421 (24%), Positives = 164/421 (38%), Gaps = 102/421 (24%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+  +P+ +E      R   + N NLF   
Sbjct: 1060 QVHMQRGMGKNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSA 1119

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   + + +  F  RD W                   +P  L       + K++  E 
Sbjct: 1120 VKKELYQFIRSRGFS-RDTW-------------------YPEGLTLLQGRDHSKKIGSE- 1158

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR--- 946
                                         ++H++ +K+IAD  EALIGA L+  GP+   
Sbjct: 1159 -----------------------------SKHALAEKTIADVCEALIGAALLTPGPQHRF 1189

Query: 947  ----------------GALLFMSWLGLKVIPPVTN--PESKHLSDVLLDGFDKFEESINY 988
                             A  +  ++ L  IP      P+   +     D   + EE + Y
Sbjct: 1190 DMGVRAVSAVVDSNEHNAASWRDYISLYSIPKYQEQAPDGSEI-----DLCRRVEEKLGY 1244

Query: 989  RFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
             F+    L  A TH SY        CYQ LEFLGDA+LD +    L+       P  LT+
Sbjct: 1245 HFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDRDPQWLTE 1304

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ---------AENDFTLNQ 1098
             + A+V+N    +LAV+LG H    + S  L   I  + +           A + +TL Q
Sbjct: 1305 HKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHYAEEAQAAASQSDVAVDYWTLTQ 1364

Query: 1099 EYYLMEGECDEAEDIEVPKA-LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
                           + PK  L D+ E+  GA+++DS    + V   + + +K     ++
Sbjct: 1365 ---------------DPPKVCLPDMVEAYLGAVFVDSNFRFEEVEVFFQQHIKPYFHDMA 1409

Query: 1158 V 1158
            +
Sbjct: 1410 I 1410



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 162/397 (40%), Gaps = 76/397 (19%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +AI ++ RY + L  +  T  +  +T   +  +D+  + C + LP  SP+ R  TG    
Sbjct: 633 SAITVLARYASSLQYENDT--SAQVTYVVLPVNDA--YVCEVILPEKSPI-RGATGMPAM 687

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVP--KTPEIETYPDST 120
            K  A R AA EACR+L + + LD  L  V    +    N    +   +T E +  P S+
Sbjct: 688 KKSTAKRYAAFEACRLLRKHRLLDEYLNSVYHRRLPAMRNARLAITSHRTNEYKILPKSS 747

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
                ++K++             P  LY   + L            + + P       + 
Sbjct: 748 ----LWNKQIGVI----------PGKLYGTVISL------------KPLTPLAREHGSMI 781

Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK- 239
           + T   +P+  +FPIF   GE    +E I   V ++ E L  +   +DY+ T  L++ + 
Sbjct: 782 LFTRDRLPQFPTFPIF--LGE---DVETIVLTVPVNME-LQPSADELDYMTTFTLRIFRD 835

Query: 240 -YLMLFDPNCSENSYFIVPTVS------DSEQIVIDWKFMTLISEHHNDVIQ---DI-PE 288
            +   +D    +  Y+++P +S         + V++W+ ++  S H  D I+   D+ PE
Sbjct: 836 VFRKTYDKEPEKLPYWLLPAISFPCNQEADPRDVVNWEILS--SVHERDDIEYQADMPPE 893

Query: 289 KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY- 347
              + FV+D    R       YR      YF +A +  N+ P S  PS     +  +   
Sbjct: 894 MLVDRFVYDHWDGR-------YR------YFTLA-VDENLQPSSPPPSHVARRRHMDTIM 939

Query: 348 -YSLKYG-------LQIQNLEQPLLDVDHTSCRLNFL 376
            YS+          L   N  QP+L  +    R N L
Sbjct: 940 NYSISLSKNSRAKFLSRCNWNQPVLHAELVRLRRNLL 976


>gi|85105148|ref|XP_961898.1| hypothetical protein NCU08270 [Neurospora crassa OR74A]
 gi|74616659|sp|Q7S8J7.1|DCL1_NEUCR RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease dcl-1; Includes: RecName:
            Full=ATP-dependent helicase dcl-1
 gi|28923482|gb|EAA32662.1| predicted protein [Neurospora crassa OR74A]
          Length = 1584

 Score = 96.7 bits (239), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 153/389 (39%), Gaps = 80/389 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + +RLE +GDSFLK A TI +Y   P+  E +    R   + N NLF     
Sbjct: 1089 NFQTGMGDNYERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLLICNKNLF----- 1143

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                           +N L  G      LE  +    F           N ++  PE ++
Sbjct: 1144 ---------------NNALEIG------LEEYIRSMSF-----------NRRQWYPEGLI 1171

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL-- 949
             + K K  D                   +H + DKSIAD  EALIGA  +    +G+   
Sbjct: 1172 -LKKGKSKDAR----------------QRHVLADKSIADVCEALIGAAYLTGQEKGSFDM 1214

Query: 950  --------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSY 995
                            +S+     +      +++  +    D   KF E + Y+FK    
Sbjct: 1215 AIKAVTAMVKDKKHRMISYGDYYAVYQKPTWQTESANSAQRDMAKKFSERMGYKFKHPRL 1274

Query: 996  LLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVN 1054
            L  A  H +Y  L      YQRLEFLGDA+ D +   +L+    A  P  LT+ + A+V+
Sbjct: 1275 LRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADPQWLTEHKMAMVS 1334

Query: 1055 NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE----- 1109
            N     L+  LGF+     +SP + + I  +V    E   T  QE        DE     
Sbjct: 1335 NQFLCCLSFHLGFNKCIATMSPSILKDIAEYVTEIEEALETAKQEAINAGKTADEYSRDY 1394

Query: 1110 ----AEDIEVPKALGDLFESVAGAIYLDS 1134
                     +PK L D+ E+  GAI++DS
Sbjct: 1395 WVHITHASRLPKCLSDVVEAYIGAIFVDS 1423



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 183/474 (38%), Gaps = 103/474 (21%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M + + + N + A LP    T L+P   I+ +       F C + +P  SP+K +V G  
Sbjct: 652  MQSLVCLAN-FTATLPHPPETSLSPEYYITTVPGG----FQCEVVMPDASPIKSAV-GKV 705

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
              +K +A   AA E C  L +   LDN L  V  + +    N    V           S+
Sbjct: 706  HLSKGVAKCAAAFELCLALLKAGHLDNHLQSVFTKQLPEMRNARLAV-----------SS 754

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            K++  Y  R+     + R  V     L+A    L  P     +  GR   P       L 
Sbjct: 755  KKKTEYAMRLKPELWSVRGVVTQ---LFATAFVLENP-----DTLGRSSRP-------LL 799

Query: 181  ILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDKNVVLSEENLSNTL-IFMDYLF 231
            +L+   +P+V SFP+F         RC  +  S++  D    L E+    TL  FMD +F
Sbjct: 800  LLSRSALPEVASFPLFFGTKRFSKVRCVPIPGSVQADD---TLVEQLTRFTLKAFMD-VF 855

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPT---------VSDSEQIVIDWKFMTLISEHHNDV 282
            +K          ++       YF+ P          ++ S   +ID K +  +SE+    
Sbjct: 856  SKE---------YEATAVNLPYFLSPMDGGHGFDFRLAKSPAHLIDRKALAYVSEN---- 902

Query: 283  IQDIPEKERENFVFDESKFRDAVVMPWY-----------RNQFEPTYFYVAEIMTNVHPR 331
                 EK    F+  +  F+D  V+  Y           R+  +PT      I+   H  
Sbjct: 903  -----EKVPYTFLEPDDFFQDKFVVDPYDGARKFFTHHRRHDMKPTDPVPDGIVAPNHRA 957

Query: 332  SMFPSRTNTYQTFE-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
                  T+    +    +S   G  I   +QP+++    S R +FL              
Sbjct: 958  WRGLGTTHDILNYSNSLWSKSRGFMIFQADQPVVEAALISTRRDFL-------------- 1003

Query: 391  TSEETRREIRESLGKKQ-LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
              ++T R+  E +  +Q  L+ E   I P PA +    +  PSI++R+ + L+A
Sbjct: 1004 --DDTLRD--EDVEPQQCFLILEPMRISPIPADVVAMLLCFPSIIHRVESNLVA 1053


>gi|302896162|ref|XP_003046961.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
 gi|256727889|gb|EEU41248.1| hypothetical protein NECHADRAFT_95309 [Nectria haematococca mpVI
            77-13-4]
          Length = 1452

 Score = 96.3 bits (238), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 172/420 (40%), Gaps = 100/420 (23%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            +FQP +    G + +RLE +GDSFLK A TI L+   P   E      R   + N NLF 
Sbjct: 987  NFQPGM----GSNYERLEFLGDSFLKMATTISLFTLIPESDECGYHVERMILICNQNLFN 1042

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
                +   E + +  F+ R +W P                           LP  K  +P
Sbjct: 1043 HAVDRKLHEYIRSKAFD-RRSWYP--------------------------DLPLKKGKAP 1075

Query: 888  EKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
            +  +                            +H++ DKSIAD  EALIGA  +  G  G
Sbjct: 1076 KTEM----------------------------RHNLADKSIADVCEALIGAAYLS-GKGG 1106

Query: 948  ALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFE---------------------ESI 986
            ++     L +K +  +   ++ H  +   D F  F+                     +++
Sbjct: 1107 SMD----LAVKAVTRMVKSKN-HKMEKFEDYFAAFKMPAWQQAEANVNQRRLVDCVADAV 1161

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
             YRFK  + L  A  H S+  + + + YQRLEFLGDA+LD  I  +L++      P  LT
Sbjct: 1162 GYRFKWPALLRSAFKHPSWPYDPVPN-YQRLEFLGDALLDMAIVDNLFQRFPQADPQWLT 1220

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            + + A+ +N     L V+L  H   KHL+     +I +     +E    L +E    E +
Sbjct: 1221 EHKMAMASNQFLGCLCVKLDLH---KHLTSTTSSLIGQISSYASE--LELAEEDARQEAK 1275

Query: 1107 CDEA---EDIEV-----PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             ++    +D  +     PKA  D+ E++ GA+++D+      V   +   ++   E +++
Sbjct: 1276 ANKTAMRKDFWLRASAPPKAFADVMEALVGAMFVDAKYDYTVVRNFFTRFIEPYFEDMAL 1335


>gi|325091272|gb|EGC44582.1| ATP-dependent helicase DCL1 [Ajellomyces capsulatus H88]
          Length = 1432

 Score = 96.3 bits (238), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 89/336 (26%), Positives = 141/336 (41%), Gaps = 55/336 (16%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            + ++ DK+IAD  EALIGA L+  G   A  F +   +K +    + ++  +SD      
Sbjct: 1094 KQALGDKTIADICEALIGASLLSGGK--ACRFDT--AVKAVTVFVDSDNHRVSDWNSYID 1149

Query: 974  --------------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLE 1018
                            LD   +    + Y F     L  A THASY    +   CYQRLE
Sbjct: 1150 LYSLPSYQIVQADAGQLDLAKQIGNRLGYHFTYPRLLRSAFTHASYPSAWSTVPCYQRLE 1209

Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
            FLGD++LD +   +LY       P  LT+ + A+V+N    ++ V+LG H    ++S  L
Sbjct: 1210 FLGDSLLDMVCVEYLYHHYPDRDPQWLTEHKMAMVSNKFLGAVTVKLGLHKHLLYISNAL 1269

Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLD 1133
               I R+            +E  +   E  ++ D      + PK L D+ E+  GAI++D
Sbjct: 1270 FGQITRYA-----------EEIEVAVAESADSPDAWTTTSDPPKCLPDMLEAYIGAIFVD 1318

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVS---VPKSPIRELLELEPENARFSKPEKLADGRRV 1190
            S  S + V   +   +K   E +S+      K P    +++                 R+
Sbjct: 1319 SNFSFEVVEDFFQRYLKQYFEDMSIYDAFANKHPTAGEVQMVDSTE-----------TRI 1367

Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
               V V  K   +GI  +   AK  A++ AL  L+ 
Sbjct: 1368 YAAVIVHDKFVAQGIASSVRYAKTKASEAALAKLEG 1403


>gi|226510363|ref|NP_001140816.1| uncharacterized protein LOC100272891 [Zea mays]
 gi|194701228|gb|ACF84698.1| unknown [Zea mays]
 gi|413948833|gb|AFW81482.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
          Length = 376

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 74/248 (29%), Positives = 122/248 (49%), Gaps = 18/248 (7%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + E  + Y+F D++ L +A+TH S+    L+  YQRLEF+GDA L    +  LY      
Sbjct: 43   RVERLLRYQFCDRALLEEALTHQSFSDGALS--YQRLEFVGDAALGLAFSNFLYLTNPTL 100

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK-MQAENDFTLNQE 1099
             PG L+ LR+A ++    A +AVR   +   +   P L  ++ +F++ ++ E    L   
Sbjct: 101  GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIESVKQELMHDLATA 160

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV- 1158
             Y           ++ PK L D+ E++A A+Y+D    L+ +WKV   + +  I   ++ 
Sbjct: 161  PY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAETID 213

Query: 1159 SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTA 1216
              P + + EL +   + A+F   +K  DG    + V VF  G   G+G +    IAK  A
Sbjct: 214  EQPVTTLHELCQKHGKVAQFKTWQK--DG---MIVVNVFVGGEMVGLGSSEQKVIAKLNA 268

Query: 1217 AKCALKHL 1224
            A+ AL  L
Sbjct: 269  ARDALGKL 276


>gi|367045744|ref|XP_003653252.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
 gi|347000514|gb|AEO66916.1| hypothetical protein THITE_2048914 [Thielavia terrestris NRRL 8126]
          Length = 1591

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 148/392 (37%), Gaps = 83/392 (21%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GD FLK A TI ++   P+  E      R   V N NLF   
Sbjct: 1102 QVNFQGGMGNNYERLEFLGDCFLKMATTISIFTLIPDKAEFDYHVERMLMVCNRNLFNNA 1161

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
                  E + +  F+ R +W P G                                    
Sbjct: 1162 LNVKLEEYIRSMAFD-RRSWYPEGL----------------------------------- 1185

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
            VL   K+K                  ++  QH + DK+IAD  EALIGA  +    +   
Sbjct: 1186 VLRKGKRK------------------DITRQHMLADKTIADVCEALIGAAYLTAQEKDPN 1227

Query: 950  LFMSWLGLKVIPPVTNPESKHLSD--------------------VLLDGFDKFEESINYR 989
             F   L ++ +  +   ++  ++                       LD   +F   + Y 
Sbjct: 1228 NFD--LAVQAVTALVKDKNHTMTSYRDYYAAYVKPDWQTAPANSTQLDMAARFHARMGYA 1285

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            FK    L  A  H +Y  +      YQRLEFLGDA+LD      L+       P  LT+ 
Sbjct: 1286 FKHPRLLRSAFQHPTYPSMYERLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQWLTEH 1345

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            + A+V+N     LAV LGFH    + SP L   I  +V    E   +  ++        D
Sbjct: 1346 KMAMVSNQFLGCLAVELGFHRALTYCSPALQREIGEYVAEMEEALQSAREDAARHGRRED 1405

Query: 1109 E-AEDIEV-----PKALGDLFESVAGAIYLDS 1134
            E + D  V     PK L D  E+  GA+++DS
Sbjct: 1406 EYSRDYWVDCSRPPKCLPDTVEAYVGAVFVDS 1437



 Score = 48.1 bits (113), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 58/225 (25%), Positives = 93/225 (41%), Gaps = 36/225 (16%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP +SP+ RSVTG    +K++A   AA E C +L + K LD  L PV  + +  
Sbjct: 700 FQCEVTLPESSPI-RSVTGRVHLSKVVAKCSAAFEMCLLLIKGKYLDQHLRPVFTKQLPA 758

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N    V           S+K+++ Y  R+     +    +  P  L+ + + L  P  
Sbjct: 759 MRNARLAV-----------SSKKKEQYKMRIKPEIWS---HLGEPTELHVMALTLADPA- 803

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF---TRCGEVEVSIELIDKNVVLS 216
                 G    P       L +L+ + IP+V  F +F    R   V     L    V  +
Sbjct: 804 ----ALGHASSP-------LLLLSRQPIPRVAPFALFFGPDRSSAVSCVPAL--GTVKFN 850

Query: 217 EENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSD 261
           +++L   L     +  K +  K+Y    +   S+  YF+ PT  D
Sbjct: 851 DDSLIQGLAAFTLMIFKDVFSKEY----EATASQLPYFLAPTRKD 891


>gi|134081603|emb|CAK46537.1| unnamed protein product [Aspergillus niger]
          Length = 1352

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 160/389 (41%), Gaps = 90/389 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+  +PN HEG LS  R + V N  L +              
Sbjct: 915  QRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLAR-------------- 960

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                                 A ++AG  A + N +  P  K  +P     +I +K    
Sbjct: 961  ---------------------AALDAGLDAFIMNKMFTPR-KWSAP-----LISEKI--- 990

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                     S+ P     Q ++  K +AD VEALIGA  I+ G   A      F+  + L
Sbjct: 991  ---------SLTP----KQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFLPEVNL 1037

Query: 958  KVIPPVTNPESK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            + I   T P  K  +++  L+  D     I Y F +KS L++++TH S   +T T  YQR
Sbjct: 1038 ENIDRTTAPMPKDGVTNHTLND-DHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQR 1096

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--- 1073
            LEFLGDA+LD  I   L    R    G +T ++ A+VN  + A   +         +   
Sbjct: 1097 LEFLGDAVLDMAIMSTLLSHPREIPQGLMTKIKHAVVNANLLAFFCMEFALTEKRTNVQV 1156

Query: 1074 -------LSPGLHEV-IQRFVK-----MQAENDFTLNQEYYL----MEG-------ECDE 1109
                   L+P    + + RF++     +Q   D  L++   L    + G           
Sbjct: 1157 TPTGTVTLNPSTEHIELWRFMRYQGAHLQTARDLALSRHSSLRGSIIHGLKHSPSYPWKS 1216

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
               +   K   D+ ES+ GAI++DS  +L
Sbjct: 1217 LSQLNADKFFSDIIESILGAIFIDSHGNL 1245


>gi|350639413|gb|EHA27767.1| hypothetical protein ASPNIDRAFT_211065 [Aspergillus niger ATCC 1015]
          Length = 1372

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 160/389 (41%), Gaps = 90/389 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+  +PN HEG LS  R + V N  L +              
Sbjct: 935  QRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLAR-------------- 980

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                                 A ++AG  A + N +  P  K  +P     +I +K    
Sbjct: 981  ---------------------AALDAGLDAFIMNKMFTPR-KWSAP-----LISEKI--- 1010

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                     S+ P     Q ++  K +AD VEALIGA  I+ G   A      F+  + L
Sbjct: 1011 ---------SLTP----KQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFLPEVNL 1057

Query: 958  KVIPPVTNPESK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            + I   T P  K  +++  L+  D     I Y F +KS L++++TH S   +T T  YQR
Sbjct: 1058 ENIDRTTAPMPKDGVTNHTLND-DHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQR 1116

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--- 1073
            LEFLGDA+LD  I   L    R    G +T ++ A+VN  + A   +         +   
Sbjct: 1117 LEFLGDAVLDMAIMSTLLSHPREIPQGLMTKIKHAVVNANLLAFFCMEFALTEKRTNVQV 1176

Query: 1074 -------LSPGLHEV-IQRFVK-----MQAENDFTLNQEYYL----MEG-------ECDE 1109
                   L+P    + + RF++     +Q   D  L++   L    + G           
Sbjct: 1177 TPTGTVTLNPSTEHIELWRFMRYQGAHLQTARDLALSRHSSLRGSIIHGLKHSPSYPWKS 1236

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
               +   K   D+ ES+ GAI++DS  +L
Sbjct: 1237 LSQLNADKFFSDIIESILGAIFIDSHGNL 1265


>gi|154301554|ref|XP_001551189.1| hypothetical protein BC1G_10104 [Botryotinia fuckeliana B05.10]
          Length = 1842

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 117/480 (24%), Positives = 193/480 (40%), Gaps = 66/480 (13%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GD FLK   +I LY   P+  E +    R   + N NLF   
Sbjct: 1365 QTNFQRGMGNNYERLEFLGDCFLKMGTSISLYGLNPDSDEFRYHVDRMCLICNKNLFNTA 1424

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    + + +  F  R  W P G   P+ L      A            PN  +L  + 
Sbjct: 1425 LKLELYKYIRSAAFN-RRAWYPEG---PELLRGKTATA------------PNTHKLGDKS 1468

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
            V ++                ++++   L++ H    KS+ + V A+    ++      A+
Sbjct: 1469 VADV---------------CEAMIGAALLSHHE--SKSMDNAVRAV--TEVVNSDNHNAV 1509

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLN 1008
            ++  +  L   P     ++   +   +D   + E    Y FK    L  A  H +Y F+ 
Sbjct: 1510 VWSDYYKLYEKPKW---QTATATAAQIDMARQVEMKHPYHFKHPRLLRSAFIHPAYLFIY 1566

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH 1068
                CYQRLEFLGD++LD      L+ +     P  LT+ + A+V+N    +L V+LGFH
Sbjct: 1567 EQIPCYQRLEFLGDSLLDMACVNFLFHNHPTKDPQWLTEHKMAIVSNQFLGALCVKLGFH 1626

Query: 1069 HFFKHLSPGLHEVIQRFVK------MQAENDFTLNQEYYLMEGECDEAEDIEV-----PK 1117
                 L   + ++I  +        +QA+ D        + + E D A D  +     PK
Sbjct: 1627 KHLLTLDSQVQKMIADYSSDINEALIQAKTD-----AKRVGKVEDDYARDYWIAVRQPPK 1681

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV---SVPKSPIRELLELEPE 1174
             L D+ E+  GAI++DS      V K +   ++   E + +      K P   L     +
Sbjct: 1682 CLPDIVEAFIGAIFVDSEYDYGEVEKFFEMHIRWYFEDMGIYDTYANKHPTTFLTNFLQK 1741

Query: 1175 N------ARFSKPEKLADGRR--VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
            N      A  SK     DGR+  V   V +  K        +   A+  AA+ AL+ L+ 
Sbjct: 1742 NMGCEDWAPVSKEVPGEDGRKNVVVCGVIIHNKVVSTATAESMRYARVGAARNALRKLEG 1801



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 99/441 (22%), Positives = 168/441 (38%), Gaps = 102/441 (23%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F C   LP  +P+ R   G    TK +A   AA E C +L++   +++ L+   K   ++
Sbjct: 960  FICEAILPEEAPI-RGAIGRPATTKQVAKCSAAFETCVILHQKGYINDYLLSTFKRSAHM 1018

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    V    + E Y   TK   +  K     F           Y+  + +K     P
Sbjct: 1019 MRNALLAVDGKKQ-EAYDMQTKPTLWSSKGKQGIF-----------YMTVLSLK----SP 1062

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDK 211
            D  ++          + Q L +LT   +P +  F +         T C  +  SI L +K
Sbjct: 1063 DNLDR----------ASQPLGLLTRSPLPDLPEFVLHFGAGRNSPTSCVPLASSITL-EK 1111

Query: 212  NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKF 271
            N  L + N+    +F D +F+K  K        DP+     YF+VP   +    ++DWK 
Sbjct: 1112 NK-LDQVNMFTLCLFQD-VFSKAYK-------SDPDSM--PYFLVPI--NCLNAIVDWKS 1158

Query: 272  ---MTLISEHHNDVIQDIPEKE------------------RENFV---FDESKFRDAVVM 307
               M++I     + +QD   K+                  ++ F+   FD S+   +V +
Sbjct: 1159 QNPMSIIDWETVEYVQDFENKQADKPWEHKPWLGKPDDYFKDKFITDPFDGSRKLWSVGI 1218

Query: 308  PWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNL---EQPLL 364
                   +P       +  N  PR    +R N     E   SL    + +     EQP++
Sbjct: 1219 TKEYRPLDP-------VPPNTAPRK--GARKNNSNIMEYSCSLWAKARAKRTFDEEQPVI 1269

Query: 365  DVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLW 424
            +  + S R N L        G  L T+             KK  ++ E   + P P ++ 
Sbjct: 1270 EATYISLRRNLLD----EFDGGELETS-------------KKSFIILEPLKVSPLPTTVG 1312

Query: 425  RKSVSLPSILYRLNALLLADE 445
              +  LP+I++R+ + L+A E
Sbjct: 1313 AMAYLLPAIIHRVESYLIALE 1333


>gi|440632208|gb|ELR02127.1| hypothetical protein GMDG_05286 [Geomyces destructans 20631-21]
          Length = 1377

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 113/470 (24%), Positives = 186/470 (39%), Gaps = 117/470 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE IGDS LKY + + LY + P+  EG LS  + + V+N +L +          ++  
Sbjct: 948  QRLEFIGDSVLKYLVCVNLYASQPSWPEGYLSRAKDQAVANSHLSRAALAVGLDRYIVTK 1007

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F  R  W PP      Y++  L  A                  SPEK            
Sbjct: 1008 TFTAR-KWSPP------YIQDILDAAS-----------------SPEK------------ 1031

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL--GLKV 959
                                ++  K +AD VEALIG   ++ G   A   +S     +++
Sbjct: 1032 -------------------RTLSTKVLADVVEALIGGAFLDRGYEAAATCISRFLPEMRI 1072

Query: 960  IPPV---------------TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHAS 1004
              P+               T+  + HL+DV        E  I Y+FK++ YLL+A+TH S
Sbjct: 1073 TAPLDIFARGIHTESVFAPTSLANGHLADV--------ERLIGYQFKNRGYLLEAITHPS 1124

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
               ++ T  YQRLEF+GDA LD ++   + ++    S G +   ++A+VN    A L + 
Sbjct: 1125 CEHDSHTSSYQRLEFIGDATLDMIVVSFMIDNAPELSHGRMHLTKTAVVNAGFLAYLCMD 1184

Query: 1065 LGFHHFF-------KHLSPGLHEV----IQRFVKMQAENDFTLN-------QEYYLMEGE 1106
                           H S G  EV    +    ++       +N       + Y+ ++  
Sbjct: 1185 ASLEQVVTDVALSPNHYSTGFTEVHSSKLVHLCQLMRHQHPEINTAMSSCLERYHKLQPA 1244

Query: 1107 CDEA------------EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-MKSEI 1153
               A              +   K L D+ ES+ GA+ +D+   L    KV   + + + +
Sbjct: 1245 IASAIAHGNEYPWVLLTSLAPAKFLSDIVESIIGAVLIDAAGDLSACKKVAENLGLIAYL 1304

Query: 1154 ERL---SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG 1200
             R+    V++P  P  +L E+   + R  + +   +G+    TVEV G  
Sbjct: 1305 RRILDEDVNIPH-PKNKLGEM--SSGRTVEYKLGKEGQEYTCTVEVGGTA 1351



 Score = 44.3 bits (103), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 29/122 (23%), Positives = 54/122 (44%), Gaps = 13/122 (10%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEF+GD++L YL+  +LY  + +   G L+  +   V N   +  A+ +G   +   
Sbjct: 947  YQRLEFIGDSVLKYLVCVNLYASQPSWPEGYLSRAKDQAVANSHLSRAALAVGLDRYI-- 1004

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   V + F   +    +  +    +++      +     K L D+ E++ G  +LD
Sbjct: 1005 -------VTKTFTARKWSPPYIQD----ILDAASSPEKRTLSTKVLADVVEALIGGAFLD 1053

Query: 1134 SG 1135
             G
Sbjct: 1054 RG 1055


>gi|317035030|ref|XP_001400925.2| ATP-dependent helicase dcl2 [Aspergillus niger CBS 513.88]
          Length = 1407

 Score = 95.9 bits (237), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 160/389 (41%), Gaps = 90/389 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+  +PN HEG LS  R + V N  L +              
Sbjct: 950  QRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLAR-------------- 995

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                                 A ++AG  A + N +  P  K  +P     +I +K    
Sbjct: 996  ---------------------AALDAGLDAFIMNKMFTPR-KWSAP-----LISEKI--- 1025

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                     S+ P     Q ++  K +AD VEALIGA  I+ G   A      F+  + L
Sbjct: 1026 ---------SLTP----KQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFLPEVNL 1072

Query: 958  KVIPPVTNPESK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            + I   T P  K  +++  L+  D     I Y F +KS L++++TH S   +T T  YQR
Sbjct: 1073 ENIDRTTAPMPKDGVTNHTLND-DHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQR 1131

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--- 1073
            LEFLGDA+LD  I   L    R    G +T ++ A+VN  + A   +         +   
Sbjct: 1132 LEFLGDAVLDMAIMSTLLSHPREIPQGLMTKIKHAVVNANLLAFFCMEFALTEKRTNVQV 1191

Query: 1074 -------LSPGLHEV-IQRFVK-----MQAENDFTLNQEYYL----MEG-------ECDE 1109
                   L+P    + + RF++     +Q   D  L++   L    + G           
Sbjct: 1192 TPTGTVTLNPSTEHIELWRFMRYQGAHLQTARDLALSRHSSLRGSIIHGLKHSPSYPWKS 1251

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
               +   K   D+ ES+ GAI++DS  +L
Sbjct: 1252 LSQLNADKFFSDIIESILGAIFIDSHGNL 1280


>gi|390601319|gb|EIN10713.1| ribonuclease III [Punctularia strigosozonata HHB-11173 SS5]
          Length = 704

 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 123/469 (26%), Positives = 197/469 (42%), Gaps = 67/469 (14%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF----KLGKQKVFGES 837
            +RLE +GD+FLKY  ++++Y T     EG L + R K ++N  L     ++G       +
Sbjct: 216  ERLELLGDAFLKYLASVYVYVTRQG-GEGALHNARQKLIANDYLMDCAVRVGLPPYIQSA 274

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
              A K+     W P    V             P     C   P+ ++ + EK +E  K++
Sbjct: 275  AFAYKY-----WAPHNVRV----------LARPTDDMTCG--PS-QDANGEKSIEEPKKE 316

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL 957
                D  +    ++    N  T   +  K+IAD VEA+IGA  +  G   AL  +  LG+
Sbjct: 317  ----DAGIPSKRKAKFDPN--TSQWLGHKAIADVVEAIIGAAYLNGGSDNALQTVLDLGI 370

Query: 958  KVIPPVTNPESKHLS-------DVLLDGFDKFEES--INYRFKDKSYLLQAMTHASYFLN 1008
             +    +  + + LS        ++L      E S  +     D+  L  A+        
Sbjct: 371  DLSGISSWTDFRRLSASDPGHPQLVLPSQSVVELSRILGRPVNDRQLLAHALACGG-LTG 429

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG-F 1067
             +    QRLEFLGDAIL+YL+ R+LY   ++ SPG L+   + +V+N   A+L V  G +
Sbjct: 430  AVPILRQRLEFLGDAILEYLLIRYLYSKNQSSSPGILS---AGMVSNDALAALCVTSGIY 486

Query: 1068 HHFFKHLSPGLHEVIQRFVKM-----QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
             H        L+   Q + K+     QAEN     +    +        D+  PK L D 
Sbjct: 487  EHLLVDRRSELYRTTQNYRKLILQRQQAENAAARAE----LRSPGQFWHDVPAPKVLSDA 542

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV------PKSPIRELLELEP-EN 1175
             E+  GA+Y+  G + D    V+  + K   +R  V++      P   + ELL+ +  ++
Sbjct: 543  MEATLGALYVSDGFTADGTQIVFERLFKPFYDR-HVTLQTLSHHPNKILAELLQKQGCQD 601

Query: 1176 ARFSKPEK-----LADGR--RVRVTVEVFGKGSYKGIGRNYCIAKCTAA 1217
              F K ++     LA GR         V   G    +G    IA  T A
Sbjct: 602  FEFRKADEHEATLLAHGRSDNAIAVCTVIVHGVILAVGEGESIAAATRA 650



 Score = 49.7 bits (117), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 51/182 (28%), Positives = 77/182 (42%), Gaps = 35/182 (19%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF--- 1070
            Y+RLE LGDA L YL + ++Y   R    G L + R  L+ N      AVR+G   +   
Sbjct: 215  YERLELLGDAFLKYLASVYVYV-TRQGGEGALHNARQKLIANDYLMDCAVRVGLPPYIQS 273

Query: 1071 ----FKHLSPGLHEVIQRFV-KMQAENDFTLNQEYYLMEGECDEAEDIEVP--------- 1116
                +K+ +P    V+ R    M        N E  + E    + ED  +P         
Sbjct: 274  AAFAYKYWAPHNVRVLARPTDDMTCGPSQDANGEKSIEE---PKKEDAGIPSKRKAKFDP 330

Query: 1117 --------KALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMK----SEIERLSVSVPK 1162
                    KA+ D+ E++ GA YL+ G   +L TV  +  ++      ++  RLS S P 
Sbjct: 331  NTSQWLGHKAIADVVEAIIGAAYLNGGSDNALQTVLDLGIDLSGISSWTDFRRLSASDPG 390

Query: 1163 SP 1164
             P
Sbjct: 391  HP 392



 Score = 47.8 bits (112), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 36/147 (24%), Positives = 69/147 (46%), Gaps = 19/147 (12%)

Query: 337 RTNTYQTFEEY---YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSE 393
           R   + +F EY    S +    I +  QPLL V      +NFL P         L +  +
Sbjct: 89  REAGFASFLEYCKVQSTRAAESITDYNQPLLQVTRLGGSVNFLNP---------LLSGPD 139

Query: 394 ETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASE 453
           E+ +         + L+P+LC     PAS+++  + LPS+  R++ +LL  E+   +  +
Sbjct: 140 ESHK------ADAKYLIPQLCPKFSIPASIFKTGLYLPSLARRIDEMLLVKELNAEILHD 193

Query: 454 IGLGKVILDEKVEWPPFNFGWKMKKLK 480
           + +G+ +L E +  P  +  +  ++L+
Sbjct: 194 L-VGEQLLLEAITPPSASAEFNYERLE 219


>gi|321456672|gb|EFX67773.1| hypothetical protein DAPPUDRAFT_115150 [Daphnia pulex]
          Length = 228

 Score = 95.5 bits (236), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 65/210 (30%), Positives = 107/210 (50%), Gaps = 14/210 (6%)

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            + K + + L +G ++ E++I Y FK+K  L+QAMTH+SY  N LT+ Y   E++GD +L 
Sbjct: 14   DGKAMVEFLFNGLEEVEKTIGYIFKNKLLLIQAMTHSSYKNNCLTESYNEQEWIGDRVLG 73

Query: 1027 YLITRHLY---EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            + + + +    +D       T   L S    N  +A L VR G H   K     L   I 
Sbjct: 74   FEMAKFVSLNCQDTVDAKSATFATLTS----NEFWAVLTVRHGIHKHIKLCDNNLTAKID 129

Query: 1084 RFVKMQAENDFTLNQEYYLMEGECDEAEDI-----EVPKALGDLFESVAGAIYLDSGMSL 1138
             F + Q  N      +++ +    D+ E +     E PK L D++E++AGAI+ DSG S 
Sbjct: 130  AFAEQQTRNGHQHMHKFFEIVESVDDPELLFATFTEPPKELADVWEALAGAIFQDSGFSN 189

Query: 1139 DTVWKVYYEIMKSEIERLSVSVPKSPIREL 1168
            D  W V   ++  +  ++S   PK+P++ +
Sbjct: 190  DITWAVIAPLLVPD-GKISYW-PKNPVQTI 217


>gi|158706449|sp|A2R345.2|DCL21_ASPNC RecName: Full=Dicer-like protein 2-1; Includes: RecName:
            Full=Endoribonuclease dcl2-1; Includes: RecName:
            Full=ATP-dependent helicase dcl2-1
          Length = 1387

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 160/389 (41%), Gaps = 90/389 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+  +PN HEG LS  R + V N  L +              
Sbjct: 950  QRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSEGRDEIVQNSRLAR-------------- 995

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                                 A ++AG  A + N +  P  K  +P     +I +K    
Sbjct: 996  ---------------------AALDAGLDAFIMNKMFTPR-KWSAP-----LISEKI--- 1025

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                     S+ P     Q ++  K +AD VEALIGA  I+ G   A      F+  + L
Sbjct: 1026 ---------SLTP----KQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFLPEVNL 1072

Query: 958  KVIPPVTNPESK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
            + I   T P  K  +++  L+  D     I Y F +KS L++++TH S   +T T  YQR
Sbjct: 1073 ENIDRTTAPMPKDGVTNHTLND-DHLMAHIGYTFTNKSLLVESLTHPSCQFDTTTQSYQR 1131

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH--- 1073
            LEFLGDA+LD  I   L    R    G +T ++ A+VN  + A   +         +   
Sbjct: 1132 LEFLGDAVLDMAIMSTLLSHPREIPQGLMTKIKHAVVNANLLAFFCMEFALTEKRTNVQV 1191

Query: 1074 -------LSPGLHEV-IQRFVK-----MQAENDFTLNQEYYL----MEG-------ECDE 1109
                   L+P    + + RF++     +Q   D  L++   L    + G           
Sbjct: 1192 TPTGTVTLNPSTEHIELWRFMRYQGAHLQTARDLALSRHSSLRGSIIHGLKHSPSYPWKS 1251

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
               +   K   D+ ES+ GAI++DS  +L
Sbjct: 1252 LSQLNADKFFSDIIESILGAIFIDSHGNL 1280


>gi|321463684|gb|EFX74698.1| hypothetical protein DAPPUDRAFT_251621 [Daphnia pulex]
          Length = 308

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 65/219 (29%), Positives = 107/219 (48%), Gaps = 6/219 (2%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E+ + YRF D+S+L  A+   +  +        +LE +GD  LD +I       +  + 
Sbjct: 16   IEKMLGYRFTDESWLHMAIQQPTANVRNAAKEAGKLELIGDRALDLIIVDECESRKPEYG 75

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKH-LSPGLHEVIQRFVKMQAEND--FTLNQ 1098
             G LT ++SAL  N   A +A++   H   +  L+     ++Q FV  Q EN   FT  +
Sbjct: 76   AGQLTTVKSALTCNNTLAVIAIKKNLHLVMQQKLTSSQETILQAFVDQQIENRHIFTHQK 135

Query: 1099 EYYLMEG-ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
            +  ++   + D   +++ PK   DLFE++ GA+Y DSG  L+   KV  + M+  I    
Sbjct: 136  DVRMIPSPKGDLPWEMDYPKIFADLFEAILGAVYKDSGKDLEKTRKVVLDAMEETISNFL 195

Query: 1158 VSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
             + P  P+R + ++ P+ A F     L DG    VT+EV
Sbjct: 196  QNTPICPLRRVTDINPQ-AVFRNNLHLPDG-SAHVTLEV 232


>gi|342872111|gb|EGU74508.1| hypothetical protein FOXB_14953 [Fusarium oxysporum Fo5176]
          Length = 1500

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 98/404 (24%), Positives = 155/404 (38%), Gaps = 102/404 (25%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GD FLK A TI +Y   P+ +E K    R   + N NLF   
Sbjct: 1034 QINFQTGMGDNYERLEFLGDCFLKMATTISIYTLMPDGNECKYHVERMLLICNQNLFNHA 1093

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
              +   E + +  F+ R  W P                           LP  K  +P+ 
Sbjct: 1094 VDRKLQEFVRSKAFD-RRTWYP--------------------------DLPLKKGKAPKT 1126

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
             +                            +H++ DK+IAD  EALIGA  +        
Sbjct: 1127 SM----------------------------KHNLADKTIADVCEALIGAAYLTSKASNMD 1158

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGF---------------------DKFEESINY 988
            L      +K +  +T  ++ H      D +                      K  ++  Y
Sbjct: 1159 L-----AVKAVTRMTKSKN-HRMKAFKDYYKAYKVPEWQEGNASASQRSLVQKVAQATGY 1212

Query: 989  RFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            RFK    +  A  H S+   ++ D YQRLEFLGD++LD  I  +LY++     P  LT+ 
Sbjct: 1213 RFKSAQLVQSAFKHPSWPYESVPD-YQRLEFLGDSLLDMAIVDYLYQNFPRADPQWLTEH 1271

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-----------KMQAENDFTLN 1097
            + A+V+N     L V+LG H      +  L   I+ +V           K   E    + 
Sbjct: 1272 KMAMVSNQFLECLCVKLGLHQHLLSSTSSLLSQIRDYVVELEVAEENAHKEAKEVGTPMR 1331

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            ++++L  G          PK   D+ E++ GA+++DS      V
Sbjct: 1332 KDFWLKVGSA--------PKVYADVIEALVGAMFVDSKYKFSVV 1367


>gi|357129531|ref|XP_003566415.1| PREDICTED: ribonuclease 3-like protein 2-like [Brachypodium
            distachyon]
          Length = 366

 Score = 95.5 bits (236), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/262 (29%), Positives = 123/262 (46%), Gaps = 24/262 (9%)

Query: 974  VLLDGF--------DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
            +LL GF         + E  + Y+F D+  L +A+TH S+   +++  YQRLEF+GDA L
Sbjct: 18   LLLPGFVADRSEAAARVERLLCYQFHDRGLLEEALTHQSFGDGSVS--YQRLEFVGDAAL 75

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
                +  LY       PG L+ LRSA ++    A +AVR   +   +   P L  ++ +F
Sbjct: 76   GNAFSNFLYLTNPTIGPGALSTLRSANISTEKLARVAVRHDLYPLLRRACPRLDLLVGQF 135

Query: 1086 ---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
               VK + E+D  L    Y           ++ PK L D+ E++A A+Y+D    L+ +W
Sbjct: 136  IESVKQELEDD--LGAAPY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLW 186

Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
            KV   + +  I   + ++ + P+  L EL  ++ +  +      G      V V G+   
Sbjct: 187  KVTRWLFEPIIT--AETIDEQPVSTLHELCQKHGKIPQFNIWQKGGTTVANVFVSGELVG 244

Query: 1203 KGIGRNYCIAKCTAAKCALKHL 1224
             G      IAK  AA+ AL +L
Sbjct: 245  MGSSEQRTIAKLNAARNALGNL 266


>gi|326533632|dbj|BAK05347.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 381

 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 76/273 (27%), Positives = 124/273 (45%), Gaps = 22/273 (8%)

Query: 962  PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC-YQRLEFL 1020
            PVT P    ++D   +   + E  + YRF+D+S L +A+TH S+         YQRLEF+
Sbjct: 27   PVTLPPPGFVAD-RAEAAARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFV 85

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDA L    +  LY       PG L+ LR+A ++    A +AVR   +   +   P L  
Sbjct: 86   GDAALGLAFSNFLYLTNPTVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDL 145

Query: 1081 VIQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            ++ +F   VK + E+D  +                 + PK L D+ E++A A+Y+D   +
Sbjct: 146  LVGQFIESVKQELEDDLGITPY---------GGSVFKAPKVLADIVEAIAAAVYVDCKFN 196

Query: 1138 LDTVWKVYYEIMKSEIERLSV-SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
            ++ +WKV   + +  +   ++   P S + EL +   ++ +F   +K          V V
Sbjct: 197  IEELWKVTRFLFEPIVTAETIDEQPVSTLHELCQKHGKDIKFKSWQKGGT-----TVVNV 251

Query: 1197 FGKGSYKGIGRN--YCIAKCTAAKCALKHLKSA 1227
            F  G   G G +    IAK  A + AL  L   
Sbjct: 252  FVGGVLVGTGSSEQMGIAKLNATRDALSKLHGG 284


>gi|224116530|ref|XP_002317324.1| predicted protein [Populus trichocarpa]
 gi|222860389|gb|EEE97936.1| predicted protein [Populus trichocarpa]
          Length = 217

 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 58/188 (30%), Positives = 100/188 (53%), Gaps = 12/188 (6%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E+ +NY+FK+K +L +A+TH+SY   T +  YQR+EFLGDA L   ++ ++Y       P
Sbjct: 9    EKILNYKFKNKRHLEEALTHSSY---TDSASYQRMEFLGDAALGLALSNYVYLAYPQLDP 65

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G L+ LR+A ++    A +A++ G + F +H +  L + ++ F    +  D   + +  +
Sbjct: 66   GHLSLLRAANISTEKLARVAIKHGLYRFVRHNATALDDKVKEFSDAVSGED---DDDALV 122

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPK 1162
              G       I+ PK L D+ ESVA A+Y+D    L T W ++  I++  +    +    
Sbjct: 123  YGGS------IKAPKILADIVESVAAAVYVDVDFDLQTFWVIFRGILEPIVTLEDLQQQP 176

Query: 1163 SPIRELLE 1170
             P+  L E
Sbjct: 177  QPVTMLFE 184


>gi|320590575|gb|EFX03018.1| rnase3 domain containing protein [Grosmannia clavigera kw1407]
          Length = 1246

 Score = 95.1 bits (235), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 110/380 (28%), Positives = 156/380 (41%), Gaps = 53/380 (13%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLE +GDSFLK A +I L+   P+  E +    R   + N NLF         E 
Sbjct: 756  GRNYERLELLGDSFLKLATSIALFTLVPDKDEFEYHVQRMCMICNRNLFNNALDMKLEEY 815

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
            + + +F+    W PP           + EAG   S  N     N      +  L + K K
Sbjct: 816  IRSREFD--RTWYPP----------TIEEAG--KSTDNDNYSDNTPAPPSQNGLVLQKGK 861

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRG---ALLFMS 953
                               L T H + DK+IAD  EA+IGA YL     R    A+  +S
Sbjct: 862  RT----------------QLPTHHPLGDKTIADVCEAMIGAAYLTTYEERNFDLAVQAVS 905

Query: 954  WLGLKVIPPVTN---------PESKHL---SDVLLDGFDKFEESINYRFKDKSYLLQAMT 1001
             +    + P+ +         P    L   +   L       + + Y+F+    L  A T
Sbjct: 906  AVVKSKLHPMQSYAEYYTAYKPPGWQLCPSTAAQLHMAVSIAKDLGYQFRFPRLLRSAFT 965

Query: 1002 HASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            H SY  +      YQRLEFLGDA+LD  I  +L+       P  LT+ + A+V+N   A 
Sbjct: 966  HPSYPRIYENLPSYQRLEFLGDALLDMAIVDYLFHKFSNKDPQWLTEHKMAMVSNQFLAF 1025

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE-AEDIEV---- 1115
            L+V LGFH      S  + + I  +V    E       E         E A D  V    
Sbjct: 1026 LSVSLGFHRHILSFSGEMRKQILEYVTKVEEERVRAESEAVEAGRPASEFARDYWVHVTH 1085

Query: 1116 -PKALGDLFESVAGAIYLDS 1134
             PKAL D+ E+  GA+++DS
Sbjct: 1086 PPKALADVLEAYVGALFVDS 1105


>gi|440632076|gb|ELR01995.1| hypothetical protein GMDG_05164 [Geomyces destructans 20631-21]
          Length = 1634

 Score = 94.4 bits (233), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 110/437 (25%), Positives = 169/437 (38%), Gaps = 105/437 (24%)

Query: 757  RNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLR 816
            RNT    +   +FQ  + N+     +RLE +GD FLK A +I LY  +P+ +E      R
Sbjct: 1122 RNTDEHGEEQVEFQRGMGNNY----ERLEFLGDCFLKMATSISLYTLHPDSNEFDFHVKR 1177

Query: 817  SKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNC 876
               + N NL  +  Q    E + +  F  R  W P         E  +++ G  A     
Sbjct: 1178 MLMICNKNLMDVALQLKLYEFIRSQAFN-RRAWYP---------EGLVLKKGKAAQ---- 1223

Query: 877  LSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALI 936
                     +P+K                               H + DK+IAD  EALI
Sbjct: 1224 ---------APKK-------------------------------HKLGDKTIADVSEALI 1243

Query: 937  GAYLIECGPRGAL-----------------------LFMSWLGLKVIPPVTNPESKHLSD 973
            GA L+      A+                        F  +   K     +    +++++
Sbjct: 1244 GAALLTPSNGHAMDHAVRAVTELVYSTDHAIEKWEDYFKGYTKPKYQIAASTASQRNVAE 1303

Query: 974  VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRH 1032
                   + E + NY F     L  A TH SY F       YQRLEFLGD++LD      
Sbjct: 1304 -------QIEITHNYHFHYPRLLRSAFTHPSYPFAYERVPNYQRLEFLGDSLLDMACVNF 1356

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV------ 1086
            L+       P  LT+ + A+V+N    ++ V LGFH      +P +   I  +V      
Sbjct: 1357 LFHRFPTKDPQWLTEHKMAMVSNQFLGAVCVALGFHTQLLQFNPIIQGSITEYVCEITEA 1416

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEV-----PKALGDLFESVAGAIYLDSGMSLDTV 1141
            + QAE D   + +   +  EC  A D  +     PK L D+ E+  GAI++DS  +   V
Sbjct: 1417 REQAEQDAIRHGK---LASEC--ARDYWLHTKLPPKCLPDIIEAYIGAIFVDSSFNYGEV 1471

Query: 1142 WKVYYEIMKSEIERLSV 1158
             + +   MK   E +++
Sbjct: 1472 ERFFDLHMKWYFEDITL 1488


>gi|326497771|dbj|BAK05975.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 379

 Score = 94.0 bits (232), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 77/271 (28%), Positives = 124/271 (45%), Gaps = 24/271 (8%)

Query: 962  PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL-TDCYQRLEFL 1020
            PVT P    ++D   +   + E  + YRF+D+S L +A+TH S+         YQRLEF+
Sbjct: 25   PVTLPPPGFVAD-RAEAAARVERLLQYRFRDRSLLDEALTHQSFSGGAGGAASYQRLEFV 83

Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            GDA L    +  LY       PG L+ LR+A ++    A +AVR   +   +   P L  
Sbjct: 84   GDAALGLAFSNFLYLTNPTVGPGALSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDL 143

Query: 1081 VIQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            ++ +F   VK + E+D  +                 + PK L D+ E++A A+Y+D   +
Sbjct: 144  LVGQFIESVKQELEDDLGITPY---------GGSVFKAPKVLADIVEAIAAAVYVDCKFN 194

Query: 1138 LDTVWKV----YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVT 1193
            ++ +WKV    +  I+ +E      ++ + P+  L EL  ++ +  K +    G    V 
Sbjct: 195  IEELWKVTRFLFEPIVTAE------TIDEQPVSTLHELCQKHGKDIKFKSWQKGGTTVVN 248

Query: 1194 VEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            V V G     G      IAK  A + AL  L
Sbjct: 249  VFVGGVLVGTGSSEQMGIAKLNATRDALSKL 279


>gi|291278588|ref|YP_003495423.1| ribonuclease III [Deferribacter desulfuricans SSM1]
 gi|290753290|dbj|BAI79667.1| ribonuclease III [Deferribacter desulfuricans SSM1]
          Length = 231

 Score = 94.0 bits (232), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 79/268 (29%), Positives = 125/268 (46%), Gaps = 60/268 (22%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            +   ++ EE I YRFK+KS LL+A+TH+SY +   L   Y+RLEFLGD++L  ++T +L 
Sbjct: 1    MSNIEELEELIGYRFKNKSLLLEALTHSSYAYEKKLKRNYERLEFLGDSVLQLIVTEYLV 60

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
               +    G L+  RS  V+  I + +A+++  + F   L  G  E++           +
Sbjct: 61   IKYKEFKEGVLSKYRSFFVSEDIISEIALKIRLNDF---LMLGKGEIVS--------GGY 109

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKSE 1152
            T                    P  L D+FES+ GA+YLD G   +   V  +  E+M   
Sbjct: 110  T-------------------KPSILADIFESLLGAVYLDGGYNEARRIVLMLMSELMDEY 150

Query: 1153 IERLSVSVPKSPIRE--------------LLELEPENAR-FSKPEKLADGRRVRVTVEVF 1197
            IE+  +  PK+ +++              L E  PE+ + F+   KLADG +        
Sbjct: 151  IEKGIIIDPKTELQKITQQKFGYIPEYKVLKEEGPEHDKVFTVELKLADGNK-------- 202

Query: 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
                + G+GRN   A+  AA  AL  L+
Sbjct: 203  ----FIGVGRNKKKAEIDAASKALTFLQ 226


>gi|342879789|gb|EGU81025.1| hypothetical protein FOXB_08500 [Fusarium oxysporum Fo5176]
          Length = 580

 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 162/387 (41%), Gaps = 90/387 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK+      Y  +P+  EG L+H + + VSN  L ++  +K   + +++ 
Sbjct: 26   QRLEFLGDSILKFCTVTQAYSEHPSWPEGLLNHFKDRLVSNERLQRVCLEKGLSKFILSK 85

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P      +YL+                              +I+K+K    
Sbjct: 86   PFTAL-KWRP------RYLD------------------------------DILKEKSAPR 108

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS-------- 953
               VD +                 K++AD VEALIGA   + G   AL  +S        
Sbjct: 109  PAPVDGS-----------------KTLADVVEALIGASYQDGGLTKALKCISVFLGDSCN 151

Query: 954  WLGLKVIPPVTNPESKHLSDVLL-DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
            W    V   +    +   SDV L    +  E+ I Y+FK KS L++A+TH SY       
Sbjct: 152  WHQEGVARDILFAAAP--SDVQLPSNLEPLEDLIKYKFKKKSLLIEAVTHGSYAAAMQEK 209

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA-----------LVNNIIFASL 1061
             Y++LEFLGDAILDY++   +++ +     G L  +++A           LVN+I    L
Sbjct: 210  SYEQLEFLGDAILDYIVVTKMFQHDPPIPTGRLHMIKTAIVNGEFLSLVNLVNSIQRKDL 269

Query: 1062 AVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY-LMEGECDEA--EDIEVPKA 1118
             VR       K  +  L + + RF   +  N     +E +  M  E   A   D   P A
Sbjct: 270  EVRPDGELVTKTTALPLWKFM-RFNSSEMANVMVETEEKFESMRRELVIALWGDGHYPWA 328

Query: 1119 L----------GDLFESVAGAIYLDSG 1135
            L           D+FE++ GA+++DSG
Sbjct: 329  LLARLHPQKFYSDMFEALLGAVWVDSG 355



 Score = 44.3 bits (103), Expect = 0.45,   Method: Compositional matrix adjust.
 Identities = 31/124 (25%), Positives = 52/124 (41%), Gaps = 12/124 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD+IL +      Y +  +   G L   +  LV+N     + +  G   F   
Sbjct: 25   YQRLEFLGDSILKFCTVTQAYSEHPSWPEGLLNHFKDRLVSNERLQRVCLEKGLSKFI-- 82

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   + + F  ++    +    +  L E        ++  K L D+ E++ GA Y D
Sbjct: 83   -------LSKPFTALKWRPRYL---DDILKEKSAPRPAPVDGSKTLADVVEALIGASYQD 132

Query: 1134 SGMS 1137
             G++
Sbjct: 133  GGLT 136


>gi|170099920|ref|XP_001881178.1| predicted protein [Laccaria bicolor S238N-H82]
 gi|164643857|gb|EDR08108.1| predicted protein [Laccaria bicolor S238N-H82]
          Length = 1469

 Score = 93.6 bits (231), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 127/486 (26%), Positives = 193/486 (39%), Gaps = 130/486 (26%)

Query: 719  ILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGI--IRNTSTPSDFSFDFQPDLENH 776
            +L  +L +I  L T  S++K V T P SP  S    +  +  T+  S+   ++Q      
Sbjct: 935  LLPALLRSIGMLTTTHSLQKAVFT-PASPISSIPMQLLMVAITAPSSNERKNYQ------ 987

Query: 777  TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK---- 832
                  RLET+GD+ LK+   I L   YP  HEG L+  +   VSN  L K    +    
Sbjct: 988  ------RLETLGDTVLKFVCGIQLLSEYPLWHEGYLTRKKDHAVSNVRLAKENVARELYR 1041

Query: 833  -VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
             +  + ++  K++P        Y   K  ET                 P   +++ E+V 
Sbjct: 1042 WIIRDMLLGKKWKPH-------YLSKKDAETT----------------PEPDKMTVEEV- 1077

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLF 951
                               +          S+  K +AD VE++IGA  +  G       
Sbjct: 1078 ------------------NTKKKKKKGKSQSLSTKVLADVVESIIGAAYLHGGFDLGYEC 1119

Query: 952  MSW--LGLKVIPPVT--------------NPESKHLSDVLLDGFDKFEESINYRFKDKSY 995
            + +  LGLK  P  T               P    L DV        E  + Y F  K  
Sbjct: 1120 IKFFDLGLKWQPLPTRIEQLLSRARDSEETPYPHQLVDV--------ESMLGYTFNHKLL 1171

Query: 996  LLQAMTHASYFLNTLTDC-YQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALV 1053
            L++A+THASY  +  T   Y+R+EFLGD+ILD ++T +LY    + +SPG +   +SA+V
Sbjct: 1172 LIEALTHASYQQDQYTSSSYERMEFLGDSILDMIVTDYLYRAPGKEYSPGHMHLRKSAVV 1231

Query: 1054 NNIIFASLAVR--LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLME------- 1104
            N    A + +R  L F       SP   +  Q  VK++   D   +QE YL +       
Sbjct: 1232 NAHFLAFICLRTCLHFDASMPRPSPD-SQGDQGPVKIELAPD---SQEIYLWQCLLHSSP 1287

Query: 1105 -------------GECDEAED----------------IEVPKALGDLFESVAGAIYLDSG 1135
                          +C    +                ++ PK L D+ ES+ GAI+LDS 
Sbjct: 1288 RVLDDQSNTFIRFRKCKAVIEKALEKGIIFPWAALTRLQAPKFLSDMVESLIGAIFLDSN 1347

Query: 1136 MSLDTV 1141
              +D V
Sbjct: 1348 GDMDCV 1353


>gi|242090101|ref|XP_002440883.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
 gi|241946168|gb|EES19313.1| hypothetical protein SORBIDRAFT_09g013160 [Sorghum bicolor]
          Length = 377

 Score = 93.2 bits (230), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 70/245 (28%), Positives = 117/245 (47%), Gaps = 12/245 (4%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + E  + Y+F D++ L +A+TH S+     +  YQRLEF+GDA L    +  LY      
Sbjct: 44   RVERLLRYQFCDRALLEEALTHQSFSDGAFS--YQRLEFVGDAALGLAFSNFLYLTNPTL 101

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK-MQAENDFTLNQE 1099
             PG L+ LR+A ++    A +AVR   +   +     L  ++ +F++ ++ E    L   
Sbjct: 102  GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCARLDLLVGQFIESVKQEVMHDLATA 161

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
             Y           ++ PK L D+ E++A A+Y+D    L+ +WKV   + +  I   + +
Sbjct: 162  PY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPVIT--AET 212

Query: 1160 VPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKC 1219
            V + P+  L EL  ++ + ++ E    G    V V V G+    G      IAK  AA+ 
Sbjct: 213  VDEQPVTTLHELCQKHGKVAQFETWQKGGMTMVNVFVGGEMVGLGSSEQKVIAKLNAARD 272

Query: 1220 ALKHL 1224
            AL  L
Sbjct: 273  ALGKL 277


>gi|115387529|ref|XP_001211270.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114195354|gb|EAU37054.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1344

 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 133/338 (39%), Gaps = 77/338 (22%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q  ++   G + +RLE +GD FLK A +I L+  +P+ +E      R   + N NLF   
Sbjct: 1034 QVHMQRGMGKNYERLEFLGDCFLKMATSISLFNQHPDDNEFDYHVNRMCLICNRNLFNSA 1093

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +K   + + +  F  RD W                   +P  L       + K++  E 
Sbjct: 1094 VKKELYQFIRSRGFS-RDTW-------------------YPEGLTLLQGRDHSKKIGSE- 1132

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPR--- 946
                                         ++H++ +K+IAD  EALIGA L+  GP+   
Sbjct: 1133 -----------------------------SKHALAEKTIADVCEALIGAALLTPGPQHRF 1163

Query: 947  ----------------GALLFMSWLGLKVIPPVTN--PESKHLSDVLLDGFDKFEESINY 988
                             A  +  ++ L  IP      P+   +     D   + EE + Y
Sbjct: 1164 DMGVRAVSAVVDSNEHNAASWRDYISLYSIPKYQEQAPDGSEI-----DLCRRVEEKLGY 1218

Query: 989  RFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
             F+    L  A TH SY        CYQ LEFLGDA+LD +    L+       P  LT+
Sbjct: 1219 HFRYPRLLHSAFTHPSYPSAWARVPCYQSLEFLGDALLDMVCVEDLFRRFPDRDPQWLTE 1278

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
             + A+V+N    +LAV+LG H    + S  L   I  +
Sbjct: 1279 HKMAMVSNKFLGALAVKLGLHTHLSYFSSALQSQITHY 1316



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 162/397 (40%), Gaps = 76/397 (19%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +AI ++ RY + L  +  T  +  +T   +  +D+  + C + LP  SP+ R  TG    
Sbjct: 607 SAITVLARYASSLQYENDT--SAQVTYVVLPVNDA--YVCEVILPEKSPI-RGATGMPAM 661

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVP--KTPEIETYPDST 120
            K  A R AA EACR+L + + LD  L  V    +    N    +   +T E +  P S+
Sbjct: 662 KKSTAKRYAAFEACRLLRKHRLLDEYLNSVYHRRLPAMRNARLAITSHRTNEYKILPKSS 721

Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
                ++K++             P  LY   + L            + + P       + 
Sbjct: 722 ----LWNKQIGVI----------PGKLYGTVISL------------KPLTPLAREHGSMI 755

Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK- 239
           + T   +P+  +FPIF   GE    +E I   V ++ E L  +   +DY+ T  L++ + 
Sbjct: 756 LFTRDRLPQFPTFPIF--LGE---DVETIVLTVPVNME-LQPSADELDYMTTFTLRIFRD 809

Query: 240 -YLMLFDPNCSENSYFIVPTVS------DSEQIVIDWKFMTLISEHHNDVIQ---DI-PE 288
            +   +D    +  Y+++P +S         + V++W+ ++  S H  D I+   D+ PE
Sbjct: 810 VFRKTYDKEPEKLPYWLLPAISFPCNQEADPRDVVNWEILS--SVHERDDIEYQADMPPE 867

Query: 289 KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEY- 347
              + FV+D    R       YR      YF +A +  N+ P S  PS     +  +   
Sbjct: 868 MLVDRFVYDHWDGR-------YR------YFTLA-VDENLQPSSPPPSHVARRRHMDTIM 913

Query: 348 -YSLKYG-------LQIQNLEQPLLDVDHTSCRLNFL 376
            YS+          L   N  QP+L  +    R N L
Sbjct: 914 NYSISLSKNSRAKFLSRCNWNQPVLHAELVRLRRNLL 950


>gi|390603552|gb|EIN12944.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Punctularia strigosozonata HHB-11173 SS5]
          Length = 1524

 Score = 93.2 bits (230), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 201/501 (40%), Gaps = 108/501 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LK+  +I L   YP  HEG LS  +   V+N  L K+   K     MI  
Sbjct: 1031 QRLETLGDTALKFMASISLLTDYPLWHEGYLSKKKDHAVANVRLAKIALSKELYRWMIRD 1090

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F  +  W P    + ++ +++  E   P S                             
Sbjct: 1091 RFIVK-KWRPK---LAEWQKSSGDEKKMPES----------------------------- 1117

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMSWLGL 957
               VD N +         Q  +  K +AD VEA+IGA  +      A+    LF   +G+
Sbjct: 1118 --EVDTNAEKGR-----GQPQLSMKMLADIVEAIIGAAYLHGSFDLAVEVTRLFD--IGI 1168

Query: 958  KVIPPVTNPE------SKHLSDV--LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             +  P T  E         + D+  +    D  E  + Y F +K  L++A+THAS     
Sbjct: 1169 DIKTPPTCIERILVRAQASVDDLREIPSQIDVVERMLGYSFNNKVLLVEALTHASLQGTE 1228

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLY-EDERAHSPGTLTDLRSALVNNIIFA--------S 1060
             T  Y+R+EFLGDA+LD ++T +LY   ++ + PG +   + A+VN    A         
Sbjct: 1229 GTISYERMEFLGDAVLDMVVTDYLYRRSDKNYGPGHMHLRKQAVVNMHFLAYVCFGISTE 1288

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQA------------ENDFT---LNQEYYLMEG 1105
            L   +G      + S  +    QR    Q              N FT    N++ +    
Sbjct: 1289 LEAAMGSSDGVGNTS--IRNSSQRVYLWQCLLHSSHRILDDQSNAFTRYQRNRKAFDRAF 1346

Query: 1106 ECD------EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY--YEIM-------- 1149
            + D          ++ PKAL D+ ES  GA++LDSG S + +  +   Y I+        
Sbjct: 1347 QHDTLFPWTALTQLQAPKALSDVVESTIGAVFLDSGGSFEVIQNLLRRYRILPTLERIVD 1406

Query: 1150 -----KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
                 +  + RLS+   K   +   + +  + R S    + +   VRVT    G+ S   
Sbjct: 1407 CDVDVQHPVSRLSIWAAKEKKKVKYDFDKADGRISCAIYIDEQEEVRVTEPYRGRISQAE 1466

Query: 1205 IGRNYCIAKCTAAKCALKHLK 1225
            +       K  AA+ A++  +
Sbjct: 1467 V-------KFMAAEQAIRKFR 1480


>gi|156044530|ref|XP_001588821.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980]
 gi|154694757|gb|EDN94495.1| hypothetical protein SS1G_10369 [Sclerotinia sclerotiorum 1980 UF-70]
          Length = 1515

 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 116/445 (26%), Positives = 176/445 (39%), Gaps = 126/445 (28%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   YP   EG LS ++ + VSN    +   +    E +I  
Sbjct: 1035 QRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKDRIVSNSRSSRAAVELGLDEYIITK 1094

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            KF     W P   +V  Y                               L+  +QK    
Sbjct: 1095 KFTG-SKWRP--MYVEDY-------------------------------LKTTEQKS--- 1117

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LF---MSW 954
                                 +  K ++D VEALIGA +++ G   AL    LF   ++W
Sbjct: 1118 -------------------RQMSSKVLSDVVEALIGACMVDGGIPKALKSLQLFFPELNW 1158

Query: 955  LGLKVIPPVTNPESKHLSDVLLDGFD--------KFEESINYRFKDKSYLLQAMTHASYF 1006
            L L         E++ +S   L   D          E+ + Y F  KS L++AMTH SY 
Sbjct: 1159 LPL---------ETRQMSLYQLAADDLHLPIALQPIEQILAYTFTKKSLLVEAMTHPSYI 1209

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
              T     +RLEFLGDAILD +I   ++  E   S   +  LRSALVN    A L + + 
Sbjct: 1210 NGT--QSLERLEFLGDAILDNIIVTAMWSYETELSHFQMHLLRSALVNADFLAFLCMEMS 1267

Query: 1067 FHHFFKHLSPG----LHEVIQR-------FVKMQAENDFTLNQEYYLMEGECDEAEDIEV 1115
               +   L+ G    +HE   R       F++  +   F++ Q+  L   +    E + V
Sbjct: 1268 IEQYVTDLTEGKDHQIHETHTRRRFSLVNFLR-HSSATFSIYQKQALARHQELREEILAV 1326

Query: 1116 PKA-----------------LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             K                    D+ ES+ GAI++DSG S+D   +V        +ER+ +
Sbjct: 1327 IKTGDKFPWTLLSRLDARKFFSDMIESLLGAIWIDSG-SIDVCTRV--------VERMGI 1377

Query: 1159 SVPKSPIRELLELEPENARFSKPEK 1183
                  +R +  +  E  R   P++
Sbjct: 1378 ------LRYMRRILREGVRIMHPKE 1396



 Score = 52.0 bits (123), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/145 (28%), Positives = 67/145 (46%), Gaps = 17/145 (11%)

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D+  +  A+THASY   +LT  YQRLEFLGD+IL    +  L  +      G L+ ++  
Sbjct: 1015 DRGLVQTAITHASY---SLTSNYQRLEFLGDSILKLCTSVQLISEYPLWPEGYLSAMKDR 1071

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V+N   +  AV LG   +          + ++F   +    +    E YL   E    +
Sbjct: 1072 IVSNSRSSRAAVELGLDEYI---------ITKKFTGSKWRPMYV---EDYLKTTEQKSRQ 1119

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGM 1136
                 K L D+ E++ GA  +D G+
Sbjct: 1120 --MSSKVLSDVVEALIGACMVDGGI 1142


>gi|322700444|gb|EFY92199.1| Dicer-like protein 2 [Metarhizium acridum CQMa 102]
          Length = 1441

 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 98/392 (25%), Positives = 154/392 (39%), Gaps = 101/392 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LKY   I +   +P   EG LS  + + V N  L +        + ++  
Sbjct: 1006 ERLEFLGDSILKYCTAIQVSAIHPEWPEGYLSFFKDRLVGNSRLSRAAIDVGLAKFILTK 1065

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F  +  W P   ++  Y        G P             ++SP K            
Sbjct: 1066 SFTGQ-KWRP--LYLDNY-------TGNPG------------KVSPRK------------ 1091

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFMS---W 954
                                 I  K++AD VEALIGA  I  G   A     LF++   W
Sbjct: 1092 ---------------------ISTKTLADVVEALIGASYINGGITKAQNCISLFVNEIQW 1130

Query: 955  LGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
              +     +    ++   DVL       E  + Y+FK KS L++AMTH S   +     Y
Sbjct: 1131 QDVSANRALFFKMARD-QDVLPAELKPLEHLVGYQFKKKSLLIEAMTHQSCMFDYNRRSY 1189

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR---------- 1064
            + LEF+GDAILD++I R +Y      +P  +  L++A+VN    A L++           
Sbjct: 1190 EHLEFIGDAILDFIIVRKMYTAGPLLAPYQMHSLKTAMVNGDFLAFLSLDHQMRRTETAV 1249

Query: 1065 -------------LGFHHFFKHLSPGL----HEVIQRFVKMQAENDFTLNQE----YYLM 1103
                         L    F +H S  +       ++R+  ++ E    L Q     + L+
Sbjct: 1250 TSSLQIIDKETTPLALWTFMRHSSEAIGIEQAATLKRYEALRGEILAALRQGSRYPWALL 1309

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
                     ++  K   D+FES+ GA+++DSG
Sbjct: 1310 -------ARLQAKKFYSDIFESLLGAVWVDSG 1334


>gi|125586950|gb|EAZ27614.1| hypothetical protein OsJ_11558 [Oryza sativa Japonica Group]
          Length = 258

 Score = 92.8 bits (229), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 74/214 (34%), Positives = 106/214 (49%), Gaps = 18/214 (8%)

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
            RLEFLGDAILD+L T + Y      +P  LTDLRSA VNN  +A  AV+ G +    H S
Sbjct: 46   RLEFLGDAILDHLFTEYYYSKYPDCTPELLTDLRSASVNNNCYAHAAVKSGLNKHILHSS 105

Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
              LH  +  +++ +    FT    Y    G       I +PK LGD+ ES+AGAIYLDS 
Sbjct: 106  SELHRKMSYYLE-EFGQSFT-GPSYGWEAG-------IGLPKVLGDVIESIAGAIYLDSK 156

Query: 1136 MSLDTVWKVYYEIMKSEIERLSV--SVPKSPIRELLEL-EPENARFSKPEKLADGRRVRV 1192
               + VW+     MK  +E L+   ++   P++ L E  +  + + +  +   DG    +
Sbjct: 157  CDKEVVWRS----MKRLLEPLATPETIEPDPVKGLQEFCDRRSFKITYEKNHVDGVSSVI 212

Query: 1193 TVEVFGKGSYKGIGRNYC--IAKCTAAKCALKHL 1224
                 G+ +Y       C  +AK  A+K  LK L
Sbjct: 213  ARVKAGETTYSATKSGPCKLVAKKLASKAVLKDL 246


>gi|255933596|ref|XP_002558177.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
 gi|211582796|emb|CAP80997.1| Pc12g13700 [Penicillium chrysogenum Wisconsin 54-1255]
          Length = 1393

 Score = 92.4 bits (228), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 101/395 (25%), Positives = 155/395 (39%), Gaps = 94/395 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+    N HEG LS  R K + N  L +              
Sbjct: 962  QRYEFFGDSVLKFTVSCQLFFRNGNWHEGYLSESRDKLIQNSRLARAALDLGI------- 1014

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                 D+++    F P+   T LI                  +L P              
Sbjct: 1015 -----DSFVLTSRFTPRKWTTPLIR----------------NKLEPS------------- 1040

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                              + +I  K +AD VE+LIGA  ++ G R A      F+  + L
Sbjct: 1041 ----------------TAKRNISTKVLADVVESLIGAAYVDGGIREAQACLHRFLPEINL 1084

Query: 958  KV--IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
                I P+  P+ K +S+++     +    I Y F D + L +A+THAS   +T T  YQ
Sbjct: 1085 FTNDISPLILPQGKGVSNLI--NHHRLAGLIGYTFNDPALLTEALTHASCEYDTSTQSYQ 1142

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF----HHFF 1071
            RLEFLGDA+LD ++   +         G +T L+ ++VN  + A   + L       H  
Sbjct: 1143 RLEFLGDAVLDMVVMAVIAGHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPSHVT 1202

Query: 1072 KHLSPGLHEV-------IQRFVKMQAENDFTLNQEYYLMEGECDEAE------------- 1111
            +  + G++ V       + RF++    N     QE  L   +   AE             
Sbjct: 1203 QFTNGGINLVPRYDQIHLWRFLRSHGPN-IKSAQEACLERHQGLRAEIRDALENGTQYPW 1261

Query: 1112 ----DIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
                 +   K L D+ ESV GAI++D G  LD  +
Sbjct: 1262 ELFARLRADKFLSDIIESVLGAIFIDCGGDLDVCY 1296



 Score = 45.1 bits (105), Expect = 0.24,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 70/169 (41%), Gaps = 27/169 (15%)

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDY 1027
            +  L+D +L G            KD ++++ A+   S  +   +  YQR EF GD++L +
Sbjct: 927  AHRLNDTILKGVG---------IKDIAHVITAI---SAPIAQASTNYQRYEFFGDSVLKF 974

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
             ++  L+        G L++ R  L+ N   A  A+ LG   F          +  RF  
Sbjct: 975  TVSCQLFFRNGNWHEGYLSESRDKLIQNSRLARAALDLGIDSFV---------LTSRFTP 1025

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
             +       N+       E   A+     K L D+ ES+ GA Y+D G+
Sbjct: 1026 RKWTTPLIRNKL------EPSTAKRNISTKVLADVVESLIGAAYVDGGI 1068


>gi|380492403|emb|CCF34628.1| RNase3 domain-containing protein [Colletotrichum higginsianum]
          Length = 1362

 Score = 92.4 bits (228), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/394 (24%), Positives = 157/394 (39%), Gaps = 101/394 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+E +GDS LK++ TI +    P+  E  LS  +   V+N  L K              
Sbjct: 906  ERIEFLGDSILKFSTTINVAALNPDWPERLLSFKKDGIVANSTLCKAA------------ 953

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          +   L+  ++   F    W  + + ++     EK            
Sbjct: 954  --------------IKHGLDRFILTKPFTGQKWRPIYVDDVLHRGDEK------------ 987

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                             +   I  K++AD VEALIGA +I+ G   AL  MS    ++  
Sbjct: 988  -----------------STRRISTKTLADIVEALIGASMIDGGLEKALKCMSIFLQQIKW 1030

Query: 962  PVTNPESKHLSDV------LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
               +   + L D       L    +  E+ + + FK K+ L+Q+MTHAS+ L     C +
Sbjct: 1031 RTLDDCRQALYDAAPPDVELPSTLEPLEQLVGHEFKKKALLVQSMTHASFTLGNTLGCLE 1090

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR----------- 1064
            RLEF+GD++LDY+I   L+      S  T+  L++A+VN      L++            
Sbjct: 1091 RLEFIGDSVLDYVIVSRLFAVTPPLSHQTMHLLKTAMVNGDFLGFLSLEQSVSQDEVVIG 1150

Query: 1065 ----------------LGFHHFFKHLSP--GLHE--VIQRFVKM--QAENDFTLNQEY-Y 1101
                            L    F +H SP  GL E  V +R+  +  Q  +     Q Y +
Sbjct: 1151 GDPTGKEPILRHSRFSLPLWKFMRHQSPAIGLEEVKVSKRYAGLRDQIIDSMERGQTYPW 1210

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
             +         +++ K   D+FES+ GA+Y+DSG
Sbjct: 1211 ALLAR------MQLRKFYSDIFESLLGAVYVDSG 1238


>gi|169608916|ref|XP_001797877.1| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
 gi|160701743|gb|EAT85008.2| hypothetical protein SNOG_07542 [Phaeosphaeria nodorum SN15]
          Length = 1017

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 157/393 (39%), Gaps = 110/393 (27%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD  LK+  T+ L    P   E  L+  + + VSN  L +          MI  
Sbjct: 565  QRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFMITK 624

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F           + P+Y    L E G           P +KE    K+           
Sbjct: 625  SF-------TGAKWAPRYAGDLLAETG-----------PAVKEERSSKL----------- 655

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                      IAD +E+LIGA     G   A+L +  L L + P
Sbjct: 656  --------------------------IADIIESLIGACYTVGGFEKAVLCVQTL-LPLEP 688

Query: 962  PVTNPESKHL------SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             ++ P +  +      ++  L G D  E  I Y FK K  LL+A+THAS+    +   Y+
Sbjct: 689  WISVPAANSILHEAAPAEADLMGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYE 748

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSP----GTLTDLRSALVNNIIFASLAVRL------ 1065
            RLEFLGDA+LDY+I++ L+    AHSP      +  +R+A VN    + LA RL      
Sbjct: 749  RLEFLGDAVLDYIISKRLH----AHSPELSHQKMHAIRTATVNA---SFLAFRLFETTID 801

Query: 1066 ----------------GFHHFFKHLSPGLH----EVIQRFVKMQAENDFTLNQE----YY 1101
                                F +  SP L+      +++  +++ E    LN+     ++
Sbjct: 802  EETINKTSMRPESQKRAIWQFLRSGSPSLNANRDNALRQHEQVRDEIIIGLNEAARFPWH 861

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
            L           + PK L D+ ESV GA+Y+DS
Sbjct: 862  LFAL-------TDPPKFLSDMVESVIGAVYIDS 887



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            D YQRLEFLGD IL ++ T HL           LT  +  +V+N   A   +  G   F 
Sbjct: 562  DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFM 621

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
               S    +   R+   + AE    + +E                 K + D+ ES+ GA 
Sbjct: 622  ITKSFTGAKWAPRYAGDLLAETGPAVKEE--------------RSSKLIADIIESLIGAC 667

Query: 1131 YLDSG 1135
            Y   G
Sbjct: 668  YTVGG 672


>gi|336470988|gb|EGO59149.1| hypothetical protein NEUTE1DRAFT_60268 [Neurospora tetrasperma FGSC
            2508]
 gi|350292065|gb|EGZ73260.1| hypothetical protein NEUTE2DRAFT_107618 [Neurospora tetrasperma FGSC
            2509]
          Length = 1583

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 107/401 (26%), Positives = 157/401 (39%), Gaps = 83/401 (20%)

Query: 763  SDFSFDFQPDLENH---TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQ 819
            SD S +   + EN+    G + +RLE +GDSFLK A TI +Y   P+  E +    R   
Sbjct: 1076 SDNSDEHDAEKENYQTGMGDNYERLEFLGDSFLKMATTIAIYTLIPDKGEFEYHVERMLL 1135

Query: 820  VSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSL 879
            + N NLF                    +N L  G      LE  +    F          
Sbjct: 1136 ICNKNLF--------------------NNALEIG------LEEYIRSMSF---------- 1159

Query: 880  PNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
             N ++  PE ++ + K K  D                   +H + DKSIAD  EALIGA 
Sbjct: 1160 -NRRQWYPEGLI-LKKGKSKDAR----------------QRHVLADKSIADVCEALIGAA 1201

Query: 940  LIECGPRGAL----------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFE 983
             +    +G+                   +S+     +    N ++   +    D   KF 
Sbjct: 1202 YLTGQEKGSFDLAIKAVTAMVKDKKHRMISYGDYYAVYQKPNWQTDPANSAQRDMAKKFS 1261

Query: 984  ESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E + Y FK    L  A  H +Y  L      YQRLEFLGDA+ D +   +L+    A  P
Sbjct: 1262 ERLGYSFKHPRLLRAAFQHPTYPSLYERLPSYQRLEFLGDALFDMVAVDYLFRKFPAADP 1321

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
              LT+ + A+V+N     L+  LGF+     +SP + + I  +V    E      +E   
Sbjct: 1322 QWLTEHKMAMVSNQFLCCLSFHLGFNKCIATMSPSILKDIAEYVAEIEEALEAAKEEAIK 1381

Query: 1103 MEGECDE---------AEDIEVPKALGDLFESVAGAIYLDS 1134
                 DE              +PK L D+ E+  GAI++DS
Sbjct: 1382 AGTTADEYSRDYWVHITHASRLPKCLSDVVEAYIGAIFVDS 1422



 Score = 51.2 bits (121), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 108/474 (22%), Positives = 183/474 (38%), Gaps = 103/474 (21%)

Query: 1    MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
            M + + + N + A LP    T L+P   I+ +       F C + +P  SP+K +V G  
Sbjct: 651  MQSLVCLAN-FTATLPHPPETSLSPEYYITTVPGG----FQCEVVMPDASPIKSAV-GKV 704

Query: 61   MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
              +K +A   AA E C  L +   LDN L  V  + +    N    V           S+
Sbjct: 705  HLSKGVAKCAAAFELCLALLKAGHLDNHLQSVFTKQLPEMRNARLAV-----------SS 753

Query: 121  KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
            K++  Y  R+     + R  V         ++  T  + +  +  GR   P       L 
Sbjct: 754  KKKTEYAMRLKPELWSVRGVVT--------QLSATAFVLENPDTLGRSSRP-------LL 798

Query: 181  ILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDKNVVLSEENLSNTL-IFMDYLF 231
            +L+   +P+V SFP+F         RC  +  S++    +  L E+    TL  FMD +F
Sbjct: 799  LLSRSALPEVASFPLFFGTKRFSRVRCVPIPGSVQ---ADETLVEQLTCFTLKAFMD-VF 854

Query: 232  TKVLKLKKYLMLFDPNCSENSYFIVPT---------VSDSEQIVIDWKFMTLISEHHNDV 282
            +K          ++       YF+ P          ++ S   +ID K +  +SE+    
Sbjct: 855  SKE---------YEATAVNLPYFLSPMDGGHGFDFRLAKSPAHLIDRKTLAYVSEN---- 901

Query: 283  IQDIPEKERENFVFDESKFRDAVVMPWY-----------RNQFEPTYFYVAEIMTNVHPR 331
                 EK    F+  +  F+D  V+  Y           R+  +PT      I+   H  
Sbjct: 902  -----EKVPYTFLEPDDFFQDKFVVDPYDGARKFFTHHRRHDMKPTDPVPDGIVAPNHRA 956

Query: 332  SMFPSRTNTYQTFE-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
                  T+    +    +S   G  I   +QP+++    S R +FL              
Sbjct: 957  WRGLGTTHDILNYSNSLWSKSRGFMIFQADQPVVEAALISTRRDFL-------------- 1002

Query: 391  TSEETRREIRESLGKKQ-LLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
              ++T R+  E +  +Q  L+ E   I P PA +    +  PSI++R+ + L+A
Sbjct: 1003 --DDTLRD--EDVEPQQCFLILEPMRISPIPADVVAMLLCFPSIIHRVESNLVA 1052


>gi|158705946|sp|Q0UL22.2|DCL2_PHANO RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL2; Includes: RecName:
            Full=ATP-dependent helicase DCL2
          Length = 1399

 Score = 92.0 bits (227), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 157/393 (39%), Gaps = 110/393 (27%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD  LK+  T+ L    P   E  L+  + + VSN  L +          MI  
Sbjct: 947  QRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFMITK 1006

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F           + P+Y    L E G           P +KE    K+           
Sbjct: 1007 SFT-------GAKWAPRYAGDLLAETG-----------PAVKEERSSKL----------- 1037

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                      IAD +E+LIGA     G   A+L +  L L + P
Sbjct: 1038 --------------------------IADIIESLIGACYTVGGFEKAVLCVQTL-LPLEP 1070

Query: 962  PVTNPESKHL------SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ 1015
             ++ P +  +      ++  L G D  E  I Y FK K  LL+A+THAS+    +   Y+
Sbjct: 1071 WISVPAANSILHEAAPAEADLMGLDVLETLIGYTFKKKPLLLEALTHASFSGPHVHCSYE 1130

Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSP----GTLTDLRSALVNNIIFASLAVRL------ 1065
            RLEFLGDA+LDY+I++ L+    AHSP      +  +R+A VN    + LA RL      
Sbjct: 1131 RLEFLGDAVLDYIISKRLH----AHSPELSHQKMHAIRTATVNA---SFLAFRLFETTID 1183

Query: 1066 ----------------GFHHFFKHLSPGLH----EVIQRFVKMQAENDFTLNQE----YY 1101
                                F +  SP L+      +++  +++ E    LN+     ++
Sbjct: 1184 EETINKTSMRPESQKRAIWQFLRSGSPSLNANRDNALRQHEQVRDEIIIGLNEAARFPWH 1243

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
            L           + PK L D+ ESV GA+Y+DS
Sbjct: 1244 LFAL-------TDPPKFLSDMVESVIGAVYIDS 1269



 Score = 41.6 bits (96), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 35/125 (28%), Positives = 49/125 (39%), Gaps = 15/125 (12%)

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071
            D YQRLEFLGD IL ++ T HL           LT  +  +V+N   A   +  G   F 
Sbjct: 944  DNYQRLEFLGDCILKFIATVHLMAANPKWPESHLTAKKGRIVSNGFLARATIAAGLDRFM 1003

Query: 1072 KHLSPGLHEVIQRFVK-MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130
               S    +   R+   + AE    + +E                 K + D+ ES+ GA 
Sbjct: 1004 ITKSFTGAKWAPRYAGDLLAETGPAVKEE--------------RSSKLIADIIESLIGAC 1049

Query: 1131 YLDSG 1135
            Y   G
Sbjct: 1050 YTVGG 1054


>gi|449526603|ref|XP_004170303.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like protein 2-like
            [Cucumis sativus]
          Length = 338

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 16/253 (6%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E  ++Y F +KS L +A+TH SY   + +  Y+RLEF+GD+ +   IT + +       
Sbjct: 8    LERILSYNFNNKSLLEEALTHXSY---SASASYERLEFVGDSAIGLAITNYFFLASPHLH 64

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G L+ LR+A V+    A +AV  G +++ +  SP +   ++ FV   A           
Sbjct: 65   QGHLSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDVKVKEFVDSVA----------- 113

Query: 1102 LMEGE-CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
             +EG        ++ PK L D+ ESVAGA+Y+D    L  +W +   +++       + V
Sbjct: 114  -LEGSSVHYGRLMKAPKVLADIVESVAGAVYVDVNFDLQKLWVIIRGLLEPIYTLEELQV 172

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
               P+  L ++   N +    +   +G     +V V GK    G      IA+  AA+ A
Sbjct: 173  EPQPVTVLFQVGQRNGKQVDIKHWKNGSNSIASVHVDGKFVASGSSMQKEIARLNAAREA 232

Query: 1221 LKHLKSAKPADVK 1233
            L  L  +   ++K
Sbjct: 233  LIKLSDSMDTELK 245



 Score = 42.7 bits (99), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 31/51 (60%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            S +RLE +GDS +  AIT + +   P++H+G LS LR+  VS   L ++ 
Sbjct: 35  ASYERLEFVGDSAIGLAITNYFFLASPHLHQGHLSLLRAANVSTEKLARVA 85


>gi|378727578|gb|EHY54037.1| RNA helicase/RNAse III [Exophiala dermatitidis NIH/UT8656]
          Length = 1629

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 118/461 (25%), Positives = 175/461 (37%), Gaps = 93/461 (20%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE IGDS LK   TI ++       EG +   R + +SN  L  +             
Sbjct: 1080 ERLEFIGDSLLKMMTTITVFNRTTCNEEG-MHCKRMEMISNKRLCSVASS---------- 1128

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN-LKELSPEKVLEIIKQKCVD 900
                      P Y + +Y     I AG     W     P  L++L   +V+++  +    
Sbjct: 1129 ----------PEYELYRY-----IRAG-TGDRWRDTWYPEFLRQLKKGRVIKLTDKH--- 1169

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI 960
                                H++  K+IAD  EA IGA ++             LG+K I
Sbjct: 1170 ------------------RTHALGKKTIADVCEATIGACIMTTQDLPTSTRFD-LGIKAI 1210

Query: 961  PPVTNPESKHLSD--------------------VLLDGFDKFEESINYRFKDKSYLLQAM 1000
              +   E   ++                     V  D   K      YRFK+   L  A 
Sbjct: 1211 TKLVGHEDHAITSWREILPMYKAPRWSLAMNDPVANDLARKVYHVTGYRFKNPCLLRSAF 1270

Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
            TH+S   + + D  QRLEFLGDA LD++    L+ +     P  LT+ + A+V+N   A+
Sbjct: 1271 THSSDQNSPVPDL-QRLEFLGDACLDWVCIWWLFRNNPTRGPQWLTEHKMAMVSNRFLAA 1329

Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRF----VKMQAENDFTLNQEYYLMEGECDEAEDIEVP 1116
            LAV LGF+      SP L+  I  +    +++  + D   +    +  G          P
Sbjct: 1330 LAVILGFNRLISASSPALYAEIGTYAAKVLELYEQEDVKPDFWTRVTSGSAP-------P 1382

Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVY---YEIMKSEIERLSVSVPKSPIRELLELEP 1173
            KAL DL ES  GA+ +DSG     + K +    E    +IE       + P   L  L  
Sbjct: 1383 KALADLVESYLGAVLVDSGFDFAEIEKFFDTHVEWFFRDIEAYDTFANRHPTTHLFRLLT 1442

Query: 1174 E--NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212
            E    R S+PE +         VE     + KG  RN  + 
Sbjct: 1443 EEFRCRKSRPEVIVQ------PVEPTTANTAKGGARNDAVG 1477


>gi|113200881|gb|ABI32401.1| dicer [Gallus gallus]
          Length = 73

 Score = 91.7 bits (226), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 44/73 (60%), Positives = 58/73 (79%), Gaps = 1/73 (1%)

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
            S +VP+SP+RELLE+EPE A+FS  E+  DG+ VRVTVEV GKG +KG+GR+Y IAK  A
Sbjct: 1    SANVPRSPVRELLEMEPETAKFSPAERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAA 59

Query: 1217 AKCALKHLKSAKP 1229
            A+ AL+ LK+ +P
Sbjct: 60   ARRALRSLKANQP 72


>gi|452839019|gb|EME40959.1| hypothetical protein DOTSEDRAFT_56023 [Dothistroma septosporum NZE10]
          Length = 1549

 Score = 91.3 bits (225), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 98/398 (24%), Positives = 152/398 (38%), Gaps = 77/398 (19%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + +R E IGD+FLK A T+  +   PN +E +    R   + N NLF+    
Sbjct: 1068 NFQRGMGENYERFEFIGDTFLKTATTLSTFILNPNENEFEFHVRRMLMLCNKNLFQTAMG 1127

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W P G    K L    +  G    +W+           P    
Sbjct: 1128 LKLYEYIRSLPFN-RRLWYPEGM---KLLAGTGVVKGEEKVMWH----------QPR--- 1170

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLI---------- 941
                                         H + +K+IAD  EALIGA  I          
Sbjct: 1171 ----------------------------DHPLGEKTIADVCEALIGAAFIAHDCPGDWKP 1202

Query: 942  ---ECGPRGALLFM--------SWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRF 990
               E   R     +        +W   K        + +  + V  D  DK E    YRF
Sbjct: 1203 EHWESAIRAVTKLVNNDDHKMQTWEDYKAAYAKPAYQMQEATAVQKDLADKVELEHLYRF 1262

Query: 991  KDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            +    L  A  H S  F+      YQRLEFLGDA+LD     +L+       P  LT+ +
Sbjct: 1263 QYPRLLYSAFVHPSLPFMYEKVPNYQRLEFLGDALLDMASISYLFYKYPDKDPQWLTEHK 1322

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFTLNQEYYLMEGEC 1107
             A+V+N    +L V +GFH   +H    L   ++ +    ++A+     +++Y+      
Sbjct: 1323 MAMVSNKFLGALCVNIGFHKHLRHHHAKLEHQVREYAIELLEAKRVAGDSRDYWTTVS-- 1380

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                  + PK L D+ ES  GA+++DS  +   V + +
Sbjct: 1381 ------DPPKCLPDIIESYVGALFIDSDFNYAEVQRFF 1412


>gi|449459642|ref|XP_004147555.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
          Length = 338

 Score = 90.9 bits (224), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 69/253 (27%), Positives = 117/253 (46%), Gaps = 16/253 (6%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E  ++Y F +KS L +A+TH SY   + +  Y+RLEF+GD+ +   +T + +       
Sbjct: 8    LERILSYNFNNKSLLEEALTHPSY---SASASYERLEFVGDSAIGLAVTNYFFLASPHLH 64

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G L+ LR+A V+    A +AV  G +++ +  SP + + ++ FV   A           
Sbjct: 65   QGHLSLLRAANVSTEKLARVAVTHGLYNYVRRDSPAMDDKVKEFVDSVA----------- 113

Query: 1102 LMEGE-CDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
             +EG        ++ PK L D+ ESVAGAIY+D    L  +W +   +++       + V
Sbjct: 114  -LEGSSVPYGGMMKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIRGLLEPIYTLEELQV 172

Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCA 1220
               P+  L ++   N +    +   +G     +V V GK    G      IA+  AA+ A
Sbjct: 173  EPQPVTVLFQVCQRNGKQVDIKHWKNGSNSIASVHVDGKFVASGSSMQKEIARLNAAREA 232

Query: 1221 LKHLKSAKPADVK 1233
            L  L  +    +K
Sbjct: 233  LIKLSDSMDTRIK 245


>gi|240255863|ref|NP_680697.4| protein RNAse II-like 1 [Arabidopsis thaliana]
 gi|332658200|gb|AEE83600.1| protein RNAse II-like 1 [Arabidopsis thaliana]
          Length = 264

 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 61/166 (36%), Positives = 89/166 (53%), Gaps = 15/166 (9%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             +  E+ +NY+FKDKS LL+A T ASY ++  ++ Y+ LE LGD+IL+  I     +   
Sbjct: 29   IESLEKILNYKFKDKSLLLKAFTDASY-VDDKSESYELLELLGDSILNMGIIYDFIKLYP 87

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              +PG LT LR+  V+    A +AV    + + +H  P L E I  FV  +A   + L+ 
Sbjct: 88   KEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFV--EAMEKYPLHS 145

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
               L           +VPK L D+ ES  GAI++D   S +TVWKV
Sbjct: 146  NGLL-----------KVPKVLADIVESTIGAIFMDCN-STETVWKV 179


>gi|2244899|emb|CAB10321.1| UFD1 like protein [Arabidopsis thaliana]
 gi|7268289|emb|CAB78584.1| UFD1 like protein [Arabidopsis thaliana]
          Length = 778

 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 72/222 (32%), Positives = 109/222 (49%), Gaps = 24/222 (10%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             +  E+ +NY+FKDKS LL+A T ASY ++  ++ Y+ LE LGD+IL+  I     +   
Sbjct: 54   IESLEKILNYKFKDKSLLLKAFTDASY-VDDKSESYELLELLGDSILNMGIIYDFIKLYP 112

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              +PG LT LR+  V+    A +AV    + + +H  P L E I  FV  +A   + L+ 
Sbjct: 113  KEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFV--EAMEKYPLHS 170

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-----MKSEI 1153
               L           +VPK L D+ ES  GAI++D   S +TVWK+         ++S  
Sbjct: 171  NGLL-----------KVPKVLADIVESTIGAIFMDCN-STETVWKISNHQKMDFELRSAK 218

Query: 1154 ERLSVSVPKSPIRELLELEPEN----ARFSKPEKLADGRRVR 1191
            E+L     +   R  L+LE E     A   + E +   +R R
Sbjct: 219  EKLEREQRERKQRAKLKLEREKKSKEAAIKQREAIEAAQRAR 260


>gi|393246694|gb|EJD54202.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Auricularia delicata TFB-10046 SS5]
          Length = 1453

 Score = 90.5 bits (223), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 107/429 (24%), Positives = 170/429 (39%), Gaps = 112/429 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK-----VFGE 836
            +R+ET+GD  LK+  ++ L   +P  HEG L+  +   VSN NL +  K+      +  +
Sbjct: 991  QRVETLGDCVLKFLTSVQLLDMHPEWHEGYLTMKKDHIVSNSNLAREAKRNKLALWIIRD 1050

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
             M+A K++P            +YL                 +LP                
Sbjct: 1051 RMVAKKWQP------------QYLT----------------ALP---------------- 1066

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIP---DKSIADCVEALIGAYLIECGPRGALLFMS 953
                 D ++D++  +  P       ++P    K +AD VE+LIG      G   A+  + 
Sbjct: 1067 -----DTSMDVDPPTEDPPAKEKDENVPRLSTKVLADVVESLIGVAHENGGYDAAVDMLR 1121

Query: 954  WLGLKVIPPVTNPESKHLSDVLL---------------DGFDKFEESINYRFKDKSYLLQ 998
             LG   I      E K ++D +                D     E+ + +RF+  S L +
Sbjct: 1122 RLG---IGQSMELEWKTVADRVHSIVNRIEPLPHGYPEDYVRTLEQMLGHRFEHPSLLFE 1178

Query: 999  AMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058
            A+THA+Y  +  T  Y+RLEFLGD++LD ++T  +Y   R   P  +T  R A VN  + 
Sbjct: 1179 ALTHANYTGDVHTVSYERLEFLGDSLLDNVVTEQVYHSPRRLPPVLMTRCRIATVNTEML 1238

Query: 1059 ASLAVRLGF--HHFFKHLSPGLHE-----------VIQRFVKMQAENDFTLNQEYYLMEG 1105
            A     L     H     +P   E            +  F++M       + ++Y     
Sbjct: 1239 AYCCANLSTEQQHMTVQRAPDRPEGATFVPTSRTVRLPTFIRMSNVAMVGVVRDYIAGYE 1298

Query: 1106 ECDE--AE--------------DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
               E  AE              ++  PK LGD+ ES+  AIYLD+  S+  V +      
Sbjct: 1299 RVHERIAERFAHGREFPWTDLFELRAPKFLGDIVESLIAAIYLDTRGSMAAVERF----- 1353

Query: 1150 KSEIERLSV 1158
               IERL +
Sbjct: 1354 ---IERLGI 1359



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/110 (26%), Positives = 54/110 (49%), Gaps = 19/110 (17%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITI----------------SEIKEDDSIMFTCSI 44
           +DNA   ++ +C +LP   + R+ PI  I                  +KE +S +F C++
Sbjct: 568 LDNATAHISHFCDKLPHSAYARMVPIYDIFPPDGFMEPLAPGQALPALKE-ESKLFGCTL 626

Query: 45  RLP--INSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPV 92
            LP  ++  L++ VT    P++  A R  A EA + L+    ++ +L+P+
Sbjct: 627 TLPNVVSPALRKHVTPMVHPSEKAAKRQVAFEAYQKLFNAGLVNPNLLPL 676


>gi|443893959|dbj|GAC71147.1| dsRNA-specific nuclease Dicer and related ribonucleases [Pseudozyma
            antarctica T-34]
          Length = 1764

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 113/425 (26%), Positives = 165/425 (38%), Gaps = 113/425 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQV-SNYNLFK------LGKQKVF 834
            +RLE +GD+FLK   T   + T     E +L HL +K + +N  L +      LG+  +F
Sbjct: 1304 ERLEFLGDTFLKLVATCHTFTTQLGRTEAEL-HLANKGILTNVRLLREARRLQLGRWALF 1362

Query: 835  GESMIATK--FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
              +    K    P   W+            AL++AG P             E+ P +  +
Sbjct: 1363 ASADFRAKRCTAPMSGWM----------GGALLQAG-PV------------EVGPGET-D 1398

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
            +I++K                             ++ D VEALIGA L+  G   AL   
Sbjct: 1399 VIREK-----------------------------TLPDVVEALIGAALLGGGTDAALHVC 1429

Query: 953  SWLGLKVIPPVTNPES-KHLSD--------------------VLLDGFDKFEESINYRFK 991
              L L        PES + L D                    V   G D  +    + ++
Sbjct: 1430 RVLTLI-------PESIRRLDDFNTLLQELKLTSVTQGWERRVDRSGLDHLQSLFGHVYR 1482

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                 L+A TH S  L ++   YQRLEFLGDA LD  I R+++      SPG LT L+  
Sbjct: 1483 YPHLGLEAFTHPS-LLASVLPSYQRLEFLGDAWLDLYIVRYIFSAHPDLSPGELTALKGM 1541

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            L +N   A+L  RLG H +    S    EV+            TL+     MEG  +   
Sbjct: 1542 LASNSTLAALGHRLGLHRYVASNS----EVLVS----------TLSAYSTAMEGAGEGTA 1587

Query: 1112 -----DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV--SVPKSP 1164
                 D+ VPKAL D  E+   +I +DS         V+  +      R     S+P + 
Sbjct: 1588 YWHKVDVGVPKALADAVEASFASIVVDSSFDPSMAQGVFDRLFVPFYNRFCPWDSIPLTD 1647

Query: 1165 IRELL 1169
            ++ LL
Sbjct: 1648 VKRLL 1652


>gi|357631088|gb|EHJ78790.1| putative dicer 1 [Danaus plexippus]
          Length = 457

 Score = 90.5 bits (223), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 46/87 (52%), Positives = 52/87 (59%), Gaps = 18/87 (20%)

Query: 758 NTSTPSDFSFDFQPDLENHTGPSP------------------KRLETIGDSFLKYAITIF 799
           N     +F FD QPDLE H GPSP                  +RLETIGDSFLK+AIT +
Sbjct: 246 NGINGKEFDFDSQPDLEGHPGPSPSVILQALTMSNANDGINLERLETIGDSFLKFAITAY 305

Query: 800 LYCTYPNVHEGKLSHLRSKQVSNYNLF 826
           LYC  P VHEGKLSH+RSKQV    +F
Sbjct: 306 LYCALPAVHEGKLSHMRSKQVLESKIF 332



 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 34/42 (80%), Positives = 38/42 (90%)

Query: 925 DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNP 966
           +KSIADCVEALIGAYL+ECGPRGALLFMSWLG+ V+P  T P
Sbjct: 334 NKSIADCVEALIGAYLLECGPRGALLFMSWLGITVLPTHTVP 375


>gi|407923675|gb|EKG16741.1| Ribonuclease III [Macrophomina phaseolina MS6]
          Length = 1533

 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 93/381 (24%), Positives = 149/381 (39%), Gaps = 82/381 (21%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
            G + +RLE +GD FLK   +I L+   P+ +E      R   + N NLF   K+    + 
Sbjct: 1052 GNNYERLEFMGDCFLKMGTSIALFSQNPDDNEFDFHVKRMCLICNQNLFDTAKRIELTKY 1111

Query: 838  MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
            + +  F  R  W P G                                   K+LE    K
Sbjct: 1112 VRSMAFS-RRTWYPEGL----------------------------------KMLEGKGHK 1136

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSW-LG 956
                              + V +HS+ DK++AD  EALIGA  +     G  L  +W   
Sbjct: 1137 KTG---------------DEVMKHSLSDKTVADVCEALIGAAYLTHNTPGKWLPENWDNA 1181

Query: 957  LKVIPPVTNPESKHLSD--------------------VLLDGFDKFEESINYRFKDKSYL 996
            ++ +  + + E+  ++                       +D   + E+   YRF+    L
Sbjct: 1182 VRAVAALVSSENHAMASWSEYFSAYKKPSYLDAEATAAQIDLVKQAEKEHPYRFRSAKLL 1241

Query: 997  LQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
              A  H SY  N      YQRLEFLGD+++D      L        P  LT+ + A+V+N
Sbjct: 1242 RSAFMHPSYPFNYEKVPSYQRLEFLGDSLIDTACITWLIYKFPDKDPQWLTEHKMAMVSN 1301

Query: 1056 IIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK--MQAENDFTLNQEYYLMEGECDEAEDI 1113
                ++ V+LGFH   K+    +   I+ +V    +AE +    ++Y+            
Sbjct: 1302 KFLGAVCVKLGFHKHLKYSYSQMEYQIRDYVTELREAERESKGARDYWTTVK-------- 1353

Query: 1114 EVPKALGDLFESVAGAIYLDS 1134
              PK L D+ E+  GA+++DS
Sbjct: 1354 SPPKCLPDIVEAYVGALFVDS 1374



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 79/200 (39%), Gaps = 31/200 (15%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
           DN++ I+  + A LP        P+  +S  + +    F C + LP NSP+  S  G   
Sbjct: 612 DNSLVILAHFTAALPCKGDVSSDPLYIMSSERGE----FLCEVILPENSPVP-SARGRPA 666

Query: 62  PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
            +K +A R AA E C  L E   LD +L+P+  + +    N   +     +   Y   TK
Sbjct: 667 SSKAVAKRSAAFELCIRLREKDYLDENLLPIFTKQLPAMRNAR-LALNCQKTNMYDMMTK 725

Query: 122 RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAI 181
                     + +   R +V    Y+   +      +P+                Q LAI
Sbjct: 726 ---------PNLWAETRGTVPETLYITVTEFPDGLEMPN----------------QPLAI 760

Query: 182 LTTKYIPKVCSFPIFTRCGE 201
           LT   +PK+  F IF   G+
Sbjct: 761 LTRTALPKLPEFLIFLNSGK 780


>gi|358397707|gb|EHK47075.1| hypothetical protein TRIATDRAFT_291296 [Trichoderma atroviride IMI
            206040]
          Length = 1507

 Score = 90.1 bits (222), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 105/392 (26%), Positives = 164/392 (41%), Gaps = 96/392 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK    I    T P+  EG LS+ R + +SN  L++            A 
Sbjct: 1058 ERLEFLGDSILKLCTCIQAAVTKPDWPEGYLSYWRDRLISNVRLYQ-----------AAV 1106

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F            +P++L T      F    W  L L        E VL+         
Sbjct: 1107 DFR-----------LPRFLVTK----PFTGHKWRPLYL--------EDVLQ--------- 1134

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA----LLFMS---W 954
                D+N  +       T+  +  K++AD VEALIGA   E G   A     +F+S   W
Sbjct: 1135 ---EDVNAPT-------TERRLSTKTLADVVEALIGASYCEGGIAMAEKCIAMFLSEIDW 1184

Query: 955  LGL---KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
             G+   + I     P ++ L  +L    +  E  + Y F+ K+ L +A+THAS+  + + 
Sbjct: 1185 DGIDKGREILFNRVPPNERLPPIL----EPLERLLGYTFQRKALLTEALTHASFMADGVM 1240

Query: 1012 D----CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
            D      +R+EFLGDA+LD++I   ++E        T+  L++ LVN    A + +  G 
Sbjct: 1241 DHGKRSLERMEFLGDAVLDHVIVTRIFEVRPELPHYTMHTLKTGLVNGDFLAFMTMEHGL 1300

Query: 1068 HHFFKHLS-------PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV----- 1115
                  ++          H  + +F++  A N   + Q           AE ++V     
Sbjct: 1301 KSMETVVTEEGSVENQETHTYLWQFMR-HAANSIGIEQLATATRHAALRAEILDVMENGA 1359

Query: 1116 --PKAL----------GDLFESVAGAIYLDSG 1135
              P AL           DLFE+V GA+++DSG
Sbjct: 1360 HYPWALLAALNPKKFYSDLFEAVLGAVWVDSG 1391


>gi|413948832|gb|AFW81481.1| hypothetical protein ZEAMMB73_371069 [Zea mays]
          Length = 285

 Score = 90.1 bits (222), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 20/230 (8%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + E  + Y+F D++ L +A+TH S+    L+  YQRLEF+GDA L    +  LY      
Sbjct: 43   RVERLLRYQFCDRALLEEALTHQSFSDGALS--YQRLEFVGDAALGLAFSNFLYLTNPTL 100

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
             PG L+ LR+A ++    A +AVR   +   +   P L  ++ +F++       ++ QE 
Sbjct: 101  GPGALSTLRAANISTEKLARVAVRHDLYPLLRRKCPRLDLLVGQFIE-------SVKQE- 152

Query: 1101 YLMEGECDE---AEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
             LM            ++ PK L D+ E++A A+Y+D    L+ +WKV   + +  I   +
Sbjct: 153  -LMHDLATAPYGGSVVKAPKVLADIVEAIAAAVYVDCKFDLEKLWKVTRWLFEPIITAET 211

Query: 1158 V-SVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
            +   P + + EL +   + A+F   +K  DG    + V VF  G   G+G
Sbjct: 212  IDEQPVTTLHELCQKHGKVAQFKTWQK--DG---MIVVNVFVGGEMVGLG 256


>gi|310794641|gb|EFQ30102.1| RNase3 domain-containing protein [Glomerella graminicola M1.001]
          Length = 1447

 Score = 89.7 bits (221), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 77/247 (31%), Positives = 111/247 (44%), Gaps = 41/247 (16%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMS-------WLGLKVIPPVT---NPESKHLSDVL 975
            K++AD VEALIGA +I+ G   AL  MS       W  L          +P    L   L
Sbjct: 1080 KTLADIVEALIGASMIDGGLDKALKCMSIFLQQINWRTLDACRLALYNFSPPDVELPSTL 1139

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                +  E  I Y+F  K+ L+QAMTHAS+ L     C +RLEF+GD++LDY++   L+ 
Sbjct: 1140 ----EPLEHLIGYKFDRKTLLIQAMTHASFNLGNPFGCLERLEFMGDSVLDYVVVNRLFA 1195

Query: 1036 DERAHSPGTLTDLRSALVNN--IIFASLAVRLG---------------FHH--------- 1069
             E      T+  L++A+VN   + F SL   +G                 H         
Sbjct: 1196 VEPPLPHQTMHLLKTAMVNGDFLGFLSLEQSIGQDEVVLGENTGKEPNLQHSRFSLPLWK 1255

Query: 1070 FFKHLSPGLH-EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAG 1128
            F +H SP +  E I    +  A  D  ++               I++ K   D+FES+ G
Sbjct: 1256 FMRHQSPAIGLEQINVHKRYTALRDQIIDSMERGKTYPWALLARIQLRKFYSDIFESLLG 1315

Query: 1129 AIYLDSG 1135
            A+Y+DSG
Sbjct: 1316 AVYVDSG 1322


>gi|296417821|ref|XP_002838549.1| hypothetical protein [Tuber melanosporum Mel28]
 gi|295634492|emb|CAZ82740.1| unnamed protein product [Tuber melanosporum]
          Length = 1490

 Score = 89.7 bits (221), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 100/404 (24%), Positives = 161/404 (39%), Gaps = 99/404 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GDS LK+  ++ L   +P  HEG L+  + + V+N  L +              
Sbjct: 953  QRFEFLGDSVLKFLTSVNLLDEHPFWHEGYLTRKKEQMVANSRLARAA------------ 1000

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          +   L   +I   F  S W    + + +E  PEK     K+K    
Sbjct: 1001 --------------IDNRLAKWIITDIFTGSKWRPRYVISEEEEFPEK-----KRKG--- 1038

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-- 959
                        P  L T      K +AD VEALIGA  +E     AL  +   GL +  
Sbjct: 1039 ------------PKQLST------KILADVVEALIGAAYLEGNYPKALKVIRAFGLNINW 1080

Query: 960  ------IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
                     + N  S++  +V L      E  I Y F  K+ LL+A+TH S+  +  +  
Sbjct: 1081 KSLEERTTSLLNRASRY-PEVHLSHLKGLESLIGYHFTHKALLLEAITHPSWESDMTSLS 1139

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQR+EFLGDA+LD ++  HL+   R  S   +   +S++VN    A L++R      +  
Sbjct: 1140 YQRMEFLGDALLDMVVVNHLFFSPRNLSHIDMHLYKSSVVNGNFLAYLSLRCAVDAKYYG 1199

Query: 1074 LSPGLHEV------------IQRFVK------------------------MQAENDFTLN 1097
            +S                  + +F++                        +QA  D+   
Sbjct: 1200 ISQRAQSTEVEIVNKSRKVELWKFIRHQHQQIQHAQKICSKRYEEDLRDSVQAALDY--G 1257

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
            ++Y   E    E++     K L D+ E++ GA+++DSG   +TV
Sbjct: 1258 KDYPWTELSPLESDKSGRNKFLSDVVEAIIGAVFIDSGGDFETV 1301


>gi|154282055|ref|XP_001541840.1| predicted protein [Ajellomyces capsulatus NAm1]
 gi|150412019|gb|EDN07407.1| predicted protein [Ajellomyces capsulatus NAm1]
          Length = 1437

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 104/404 (25%), Positives = 155/404 (38%), Gaps = 109/404 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+E +GDS LK+  T+ L  T    HEG LS  +   VSN                   
Sbjct: 946  QRIEFLGDSILKFQTTLQLTATNLIWHEGLLSRAKDTVVSN------------------- 986

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                            K L  A IEAG                            K + L
Sbjct: 987  ----------------KRLSYAAIEAGL--------------------------DKFILL 1004

Query: 902  DCTVDMNVQSVVPYNL---------VTQHSIPDKSIADCVEALIGAYLIECGPRGA---- 948
            D  V    +   PYN          V Q  +  K++AD VEAL+ A  ++ G R A    
Sbjct: 1005 D--VFTGAKWRPPYNKDHLESEEQGVAQREMSTKTLADVVEALLAAATLDGGQRKAEKCL 1062

Query: 949  ---LLFMSWLGLK-VIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHAS 1004
               L  + W+ L+  +  + +   +   + L   F + E  + Y F  K +L+QA TH S
Sbjct: 1063 EIFLPEIQWMPLEDRVNALYSSVPEAYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPS 1122

Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
                + T  YQRLEF+GDAILD++I  HL+   RA     +  +R+AL N    A L + 
Sbjct: 1123 N-PGSKTSSYQRLEFVGDAILDHIIVHHLFNAPRALPHFDMHLMRTALANADFLAFLCIG 1181

Query: 1065 LGFHHFFKHLSPGLHE-----------VIQRFVKMQAENDFTLNQ-----EYYLMEGECD 1108
            +        ++    E            + ++++     + T  Q     +Y  ++ +  
Sbjct: 1182 MSTERVRGEIAECSKENTSTKLTTRKVSLWQYMRHGTSWELTAAQQQTANQYQTLQADIS 1241

Query: 1109 EAED------------IEVPKALGDLFESVAGAIYLDSGMSLDT 1140
            EA +                K   DL ESV GAI++DS  SLD 
Sbjct: 1242 EALEKSHTYPWTLLSRFHPQKFFSDLIESVLGAIFIDSHGSLDA 1285


>gi|67525463|ref|XP_660793.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
 gi|40743766|gb|EAA62953.1| hypothetical protein AN3189.2 [Aspergillus nidulans FGSC A4]
          Length = 1726

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/291 (27%), Positives = 117/291 (40%), Gaps = 64/291 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ +   L+   PN HEG L+      V N  L +    +     +I+ 
Sbjct: 1206 QRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISN 1265

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +            F P+     LI                      EK+           
Sbjct: 1266 R------------FTPRKWSAPLIS---------------------EKL----------- 1281

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA----LLFMSWLGL 957
                         Y   +  S+  K +AD VEALIGA  I+ G   A    + F+  + L
Sbjct: 1282 -------------YASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIEL 1328

Query: 958  ---KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
               K+  P + P SK      L   +  E  I Y FKDK+ L++A+TH S   +T    Y
Sbjct: 1329 PETKLPRPESMPMSKDHKKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSY 1388

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
            QRLEFLGDA+LD LI   +         G +T ++ A+VN  + A L ++ 
Sbjct: 1389 QRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVNGHLLAFLCMQF 1439



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 18/150 (12%)

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
            + +F+D  +++ A+T         TD YQR EF GD++L + +   L+ +      G LT
Sbjct: 1181 DIQFQDLRHVITAITMP--LAQAPTD-YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLT 1237

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            +   ALV N      A+  G   +          +  RF   +        + Y      
Sbjct: 1238 ETLHALVQNARLTRAALDQGLDAYI---------ISNRFTPRKWSAPLISEKLYASASTR 1288

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
               A      K L D+ E++ GA Y+D G+
Sbjct: 1289 SMSA------KVLADVVEALIGAAYIDGGL 1312


>gi|70981901|ref|XP_746479.1| RNA helicase/RNAse III [Aspergillus fumigatus Af293]
 gi|66844102|gb|EAL84441.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus Af293]
          Length = 1384

 Score = 89.7 bits (221), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 172/428 (40%), Gaps = 114/428 (26%)

Query: 749  KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVH 808
            KS +H II   STP          L N+     +R E +GDS LK++++  L+  +PN H
Sbjct: 929  KSTDH-IITAISTP------LAHRLTNY-----QRYEFLGDSILKFSVSCQLFFQHPNWH 976

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EG LS                     G  MI     PR             L  A ++ G
Sbjct: 977  EGYLSE--------------------GRDMIVQN--PR-------------LAKAALDTG 1001

Query: 869  FPASLWNCLSLPNLKELSPEK-VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
              A +         K L+  K    +I +K               VP     +  +  K 
Sbjct: 1002 LDAYIVT-------KRLASRKWSAPLISEKL------------GRVP----AKRQMSTKV 1038

Query: 928  IADCVEALIGAYLIECGPRGALL----FMSWLGLKVIPPVTN-----PES-KHLSDVLLD 977
            +AD VEALIGA  ++ G   A      F+  + L  +   T      PES +H+ +    
Sbjct: 1039 LADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTRTAARSVAPESARHMMN---- 1094

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              D+ ++ I Y F+D+S L++A+TH S   ++ T  YQRLE+LGDA+LD +I   ++   
Sbjct: 1095 --DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHR 1152

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHH-----------FFKHLSPGLHEVIQRFV 1086
                 G +T ++ A+VN  + A L +                  F   S      + RF+
Sbjct: 1153 IQRPQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFM 1212

Query: 1087 K-----MQAENDFTLNQEYYLMEGECDE-----------AEDIEVPKALGDLFESVAGAI 1130
            +     ++A  D +L +   L +                   +   K   D+ ESV GAI
Sbjct: 1213 RYRGQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAI 1272

Query: 1131 YLDSGMSL 1138
            ++DSG +L
Sbjct: 1273 FVDSGGNL 1280


>gi|159122296|gb|EDP47418.1| RNA helicase/RNAse III, putative [Aspergillus fumigatus A1163]
          Length = 1384

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 110/428 (25%), Positives = 171/428 (39%), Gaps = 114/428 (26%)

Query: 749  KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVH 808
            KS +H II   STP          L N+     +R E +GDS LK++++  L+  +PN H
Sbjct: 929  KSTDH-IITAISTP------LAHRLTNY-----QRYEFLGDSILKFSVSCQLFFQHPNWH 976

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EG LS                     G  MI     PR             L  A ++ G
Sbjct: 977  EGYLSE--------------------GRDMIVQN--PR-------------LAKAALDTG 1001

Query: 869  FPASLWNCLSLPNLKELSPEK-VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
              A +         K L+  K    +I +K   +     M+                 K 
Sbjct: 1002 LDAYIVT-------KRLASRKWSAPLISEKLERVPAKRQMST----------------KV 1038

Query: 928  IADCVEALIGAYLIECGPRGALL----FMSWLGLKVIPPVTN-----PES-KHLSDVLLD 977
            +AD VEALIGA  ++ G   A      F+  + L  +   T      PES +H+ +    
Sbjct: 1039 LADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTRTAARSVAPESARHMMN---- 1094

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              D+ ++ I Y F+D+S L++A+TH S   ++ T  YQRLE+LGDA+LD +I   ++   
Sbjct: 1095 --DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHR 1152

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHH-----------FFKHLSPGLHEVIQRFV 1086
                 G +T ++ A+VN  + A L +                  F   S      + RF+
Sbjct: 1153 IQRPQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFM 1212

Query: 1087 K-----MQAENDFTLNQEYYLMEGECDE-----------AEDIEVPKALGDLFESVAGAI 1130
            +     ++A  D +L +   L +                   +   K   D+ ESV GAI
Sbjct: 1213 RYRGQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAI 1272

Query: 1131 YLDSGMSL 1138
            ++DSG +L
Sbjct: 1273 FVDSGGNL 1280


>gi|158706443|sp|Q0CEI2.2|DCL2_ASPTN RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1377

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 109/471 (23%), Positives = 183/471 (38%), Gaps = 118/471 (25%)

Query: 777  TGPSP---KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKV 833
            T  SP   +R E  GDS LK+ ++  LY  +PN  EG LS  R + V N  L +      
Sbjct: 943  TAQSPTDYQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVG 1002

Query: 834  FGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
                ++  +F PR  W  P                                L  EK +E+
Sbjct: 1003 LDAFILTRRFTPR-KWTAP--------------------------------LISEKAVEV 1029

Query: 894  IKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
              ++                         +  K +AD VE+LIGA  ++ G   A   + 
Sbjct: 1030 AGKR------------------------PLSSKVLADVVESLIGAAYMDGGQAKAHTCIR 1065

Query: 954  WLGLKV-IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
             L  ++ I P+T P     +  +++  D  ++ + Y F +++ L++A+TH S   +  T 
Sbjct: 1066 RLLPEIEICPITPPPVHESAPHVMN--DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQ 1123

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL------- 1065
             YQRLEFLGDA+LD ++   +         G +T ++ AL N  + A   +         
Sbjct: 1124 SYQRLEFLGDAVLDMVVVHAMAHHAVECPQGEMTMIKHALTNANLLAFFCMEFVVAQEHT 1183

Query: 1066 ---------GFH-----------HFFKH----LSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
                     GF             F +     L+     V+ R  +++AE    ++  ++
Sbjct: 1184 DVDAVPAAGGFALRSEQKPIELWRFMRSEALDLNNARETVLHRHSQLRAE---IVHALHH 1240

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE-------IMKSEIE 1154
              +        +   K   D+ ES+ GAI++DS   LD V  ++ E       + +   +
Sbjct: 1241 GAQYPWQALSQLNADKFFSDIVESILGAIFVDSRGDLD-VCAMFVERIGLLPYLRRILAD 1299

Query: 1155 RLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            R+ V  P+   +          R SK E L   +RV   V+  G  SY+ +
Sbjct: 1300 RVDVMHPRHTAQ----------RLSKGEALFTAKRV---VDGSGNASYRCV 1337


>gi|158706446|sp|Q4WA22.2|DCL2_ASPFU RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1388

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 111/428 (25%), Positives = 172/428 (40%), Gaps = 114/428 (26%)

Query: 749  KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVH 808
            KS +H II   STP          L N+     +R E +GDS LK++++  L+  +PN H
Sbjct: 933  KSTDH-IITAISTP------LAHRLTNY-----QRYEFLGDSILKFSVSCQLFFQHPNWH 980

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EG LS                     G  MI     PR             L  A ++ G
Sbjct: 981  EGYLSE--------------------GRDMIVQN--PR-------------LAKAALDTG 1005

Query: 869  FPASLWNCLSLPNLKELSPEK-VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKS 927
              A +         K L+  K    +I +K               VP     +  +  K 
Sbjct: 1006 LDAYIVT-------KRLASRKWSAPLISEKL------------GRVP----AKRQMSTKV 1042

Query: 928  IADCVEALIGAYLIECGPRGALL----FMSWLGLKVIPPVTN-----PES-KHLSDVLLD 977
            +AD VEALIGA  ++ G   A      F+  + L  +   T      PES +H+ +    
Sbjct: 1043 LADVVEALIGAAYVDGGHSTAQACIRRFLPEINLHAVDTRTAARSVAPESARHMMN---- 1098

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
              D+ ++ I Y F+D+S L++A+TH S   ++ T  YQRLE+LGDA+LD +I   ++   
Sbjct: 1099 --DRLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHR 1156

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHH-----------FFKHLSPGLHEVIQRFV 1086
                 G +T ++ A+VN  + A L +                  F   S      + RF+
Sbjct: 1157 IQRPQGDMTKIKHAVVNANLLAFLCMEFAISEEKLDVAQTSKDSFAVTSSQESVELWRFM 1216

Query: 1087 K-----MQAENDFTLNQEYYLMEGECDE-----------AEDIEVPKALGDLFESVAGAI 1130
            +     ++A  D +L +   L +                   +   K   D+ ESV GAI
Sbjct: 1217 RYRGQGLKAARDASLARHRALRDEIASSLLQAPHYPWHALSRLNADKFFSDIIESVLGAI 1276

Query: 1131 YLDSGMSL 1138
            ++DSG +L
Sbjct: 1277 FVDSGGNL 1284


>gi|408399323|gb|EKJ78431.1| hypothetical protein FPSE_01388 [Fusarium pseudograminearum CS3096]
          Length = 1860

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 147/397 (37%), Gaps = 102/397 (25%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            +FQP +    G + +RLE +GDSFLK A TI L+   P  +E      R   + N NLF 
Sbjct: 1394 NFQPGM----GDNYERLEFLGDSFLKMATTISLFTLIPESNECGYHAERVLLICNQNLFN 1449

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
             G +    + + +  F+ R  W P                                    
Sbjct: 1450 HGVEHNLHQYIRSKSFD-RRAWYPD----------------------------------- 1473

Query: 888  EKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRG 947
               L + K K      T D+  +++                AD  EALIGA  +  G  G
Sbjct: 1474 ---LPLKKGKVTKTTMTHDLADKTI----------------ADVCEALIGAAYLS-GEEG 1513

Query: 948  AL-------------------LFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINY 988
             +                    F  +     +PP    +S  L   L+D   K      Y
Sbjct: 1514 NMDMGVKAVTRMVKSKNHEMEFFRDYFAAFKVPPWHTAKSTTLQRRLVDCVAKV---TGY 1570

Query: 989  RFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            RF   + L     H S+    + D YQRLEFLGDA+LD ++   LY+  +   P  LT+ 
Sbjct: 1571 RFNSSALLQSVFKHPSWPYEAVPD-YQRLEFLGDALLDMVVVDFLYKRFKLADPQWLTEH 1629

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-----------KMQAENDFTLN 1097
            + A+V+N     L V+L  H      +  L   I  +V           K+   N     
Sbjct: 1630 KMAMVSNQFLGCLCVQLNLHKHLLFTTSSLTGQISEYVAELELAKEDAHKVAKANRTPTR 1689

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             +++L             PK L D+ E++ GA+++D+
Sbjct: 1690 MDFWLHAS--------LPPKVLADVAEALIGAMFVDA 1718



 Score = 47.4 bits (111), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 90/419 (21%), Positives = 166/419 (39%), Gaps = 73/419 (17%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            F   + LP +SPL RS++G    +K LA   AA EAC +L + K +D    PV  + + +
Sbjct: 998  FIADVILPDSSPL-RSMSGIPQRSKALAKCSAAFEACVLLIDKKYIDEHFQPVFVKALPV 1056

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N               DS K+   Y+ R+     + R +  T   L+A  + L  P  
Sbjct: 1057 LRNARLAA----------DSGKKAD-YNMRLRPEAWSVRGACKT---LFATMIILENPGA 1102

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV-LSEE 218
              +N+  R           L +L+   +PK+   P+F   G   V   +  +N + LS  
Sbjct: 1103 LGENRPSRP----------LMLLSRNKLPKLPEIPLFFGNGCSSVVKLIASENPLELSPC 1152

Query: 219  NLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIV----IDWKFMTL 274
             +   L F   +F  V   +     F+    +  YF+ P  S     +    IDW+ + +
Sbjct: 1153 EIQGILRFTLRIFGDVFSKE-----FNAGTDQMPYFLAPCTSIQSSTLIRARIDWQIVEI 1207

Query: 275  ISEHHNDVIQDIPEK-ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSM 333
            + E  +      P++   + FV D       +++       +P         ++  P  +
Sbjct: 1208 VKEFESLSWWGAPDEFFVDKFVTDPLDRGRKLIIRGIDKSKKP---------SDSTPVGV 1258

Query: 334  FPSRTNTYQ----TFEEY-----YSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRK 384
               R+ +Y+    T +EY      + +   Q Q+ +QP++  +  S R N L     +  
Sbjct: 1259 PEPRSRSYKSVQPTIKEYSNSLFLNSRRKAQWQD-DQPVVKAELLSLRRNLLDEFQTD-- 1315

Query: 385  GINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLA 443
                            E+L K   ++ E   + P P  +   +++ P+I+ R+ ++L+A
Sbjct: 1316 ----------------ENLNKDCFVILEPLRVSPIPIDVVFMTMTFPAIINRIESILIA 1358


>gi|406863987|gb|EKD17033.1| RNase3 domain-containing protein [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1477

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 128/512 (25%), Positives = 196/512 (38%), Gaps = 132/512 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD+ LK   +I L   YP  HEG L+ L+ + VSN  L+               
Sbjct: 1013 QRLEFLGDTILKMCTSIQLMAQYPLWHEGYLTELKGRIVSNSCLYAAA------------ 1060

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          +   L+  +I   F    W            P  V +++      +
Sbjct: 1061 --------------IENGLDRFIITKKFSGHKWR-----------PTYVDDLLAMGTDHV 1095

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG-LKVI 960
            D    M+  S +P              AD VEALIGA    C   G + F   L  LK+ 
Sbjct: 1096 DKPRTMS--SKIP--------------ADVVEALIGA----CYEDGEMGFEKPLQCLKIF 1135

Query: 961  PPVTNPESKHLSDVLL----------DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
             P  + +    S  LL                E+ + Y F +K  L++A+THASY L + 
Sbjct: 1136 IPRIDWQPLAQSQSLLFQRAPNVELPQTLRILEDMLGYEFNNKGLLVEAVTHASYNLGSA 1195

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAH--SPGTLTDLRSALVNNIIFASLAVR---- 1064
            +   +RLEFLGDAILDYL+   L + E     S   +  +R+ALVN  I A L +     
Sbjct: 1196 S--LERLEFLGDAILDYLVVERLMQTEDGTFISHVKMHLIRTALVNADILAFLCMEFHTT 1253

Query: 1065 -----------------------LGFHHFFKHLSPG----------LHEVIQRFVKMQAE 1091
                                   L    F +H S            LH+++    K++  
Sbjct: 1254 QEVIDLEIQPDGGSPQERPKMATLPLWKFMRHTSSAIAAEQQVAAELHDLLA--PKIRDV 1311

Query: 1092 NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL-------DTVWKV 1144
             D   N  + L+  +       + PK   DL ES+ GA+Y+DSG+           +W +
Sbjct: 1312 FDSGKNYPWALLARQ-------QAPKFFSDLVESLIGALYVDSGLDACRQFLERLKIWSI 1364

Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTV-EVF-GKGSY 1202
            Y  +    +E   V  PK  +  L   E    + S      +G   R  V  VF G+   
Sbjct: 1365 YRRLRFGAME---VYNPKEELGILAAAERVEYKLSTAPDTPEGEESRGLVCRVFVGEREI 1421

Query: 1203 KGI--GRNYCIAKCTAAKCALKHLKSAKPADV 1232
              +  G +    +   A+ A++ L++ +P D+
Sbjct: 1422 ACVQDGVSRIEIETRGAEEAVRILRAERPGDI 1453


>gi|242221926|ref|XP_002476701.1| predicted protein [Postia placenta Mad-698-R]
 gi|220724029|gb|EED78105.1| predicted protein [Postia placenta Mad-698-R]
          Length = 232

 Score = 89.4 bits (220), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 78/262 (29%), Positives = 112/262 (42%), Gaps = 52/262 (19%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LKY  +I L+  YP  HEG L+  +   VSN  L K    K   + +I  
Sbjct: 14   QRLETLGDTVLKYITSIKLFADYPLWHEGYLARRKDHAVSNVQLAKCAISKGLYQWIIRD 73

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F PR        + P Y+                          PE +           
Sbjct: 74   RFVPRK-------WRPHYMS------------------------GPEDIGS--------- 93

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
              T   N  +           +  K +AD VE+LIGA     G   A+  +S  GL +  
Sbjct: 94   -RTEGANGNNDDKKKKTKTQELSTKVLADVVESLIGAAYEHGGFDLAVNCISIFGLGLPS 152

Query: 962  PVTNPESKHLSDVL-----LD----GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
              T P+  H+ +++     LD         E  + Y F  K+ L+QA+THASY  +  T 
Sbjct: 153  WQTIPQ--HIDNIMTKIEELDYPPPQLSLVETMLGYEFTHKALLVQALTHASYHGDLTTM 210

Query: 1013 CYQRLEFLGDAILDYLITRHLY 1034
             Y+RLEFLGD+ LD ++T  LY
Sbjct: 211  SYERLEFLGDSALDMVVTDWLY 232


>gi|118370147|ref|XP_001018276.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila]
 gi|89300043|gb|EAR98031.1| Dicer-related RNase III protein Dcr1p, putative [Tetrahymena
            thermophila SB210]
          Length = 1903

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 29/266 (10%)

Query: 973  DVLLDGFDKFEESINYRFKDKSYLLQAMT-HASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
            D+ + GF+K    +NY FKDKS L++A+  H++         YQ LEFLGDA+++ L+  
Sbjct: 1636 DIAISGFEKI---LNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVS 1692

Query: 1032 HLYE-----DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            H Y       ++ +SP    +++S L++N   + +A+   FH++  ++S    + I +F+
Sbjct: 1693 HGYHISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFI 1752

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +     D  LN ++   E    +A     PK LGDL+ESVAGAI +DS +S  T   +Y 
Sbjct: 1753 E-----DCNLNTKF--KESVSHQANS---PKVLGDLWESVAGAIIMDSDIS--TFVSIYG 1800

Query: 1147 EIMKSEIERLSVSVPK--SPIRELLELEPEN-----ARFSKPEKLADGR-RVRVTVEVFG 1198
            ++    I        K    ++E ++L  +       + ++  K  DG+ +V+VT+ +  
Sbjct: 1801 KLYAPYIIHFVTFYQKIIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQ 1860

Query: 1199 KGSYKGIGRNYCIAKCTAAKCALKHL 1224
                 GI  +  +A+  A + A  H+
Sbjct: 1861 IKVGTGIDYSETLAEKKAFQDAYDHI 1886



 Score = 47.4 bits (111), Expect = 0.058,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D   L+++ +  SY   + T   + LE +GD ++ Y+ + +LY      S   LT +R+ 
Sbjct: 1360 DLELLIESFSQISY---SKTKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTI 1416

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
             +NN      A R G   + +   P  ++   RF      N F LN      E   D+ +
Sbjct: 1417 FINNKYLGISAFRNGLQFYVQTKRPSSYDW--RF------NLFNLNS---FTEAPQDQKQ 1465

Query: 1112 DIEVPKA-LGDLFESVAGAIYLDSGMSLDT 1140
              ++  + L D  ESV G  Y  +  +L+T
Sbjct: 1466 SFQLSYSNLSDTLESVVGCFYASNQFTLNT 1495


>gi|392566224|gb|EIW59400.1| P-loop containing nucleoside triphosphate hydrolase protein [Trametes
            versicolor FP-101664 SS1]
          Length = 1508

 Score = 89.0 bits (219), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 127/270 (47%), Gaps = 40/270 (14%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDV-----LLDGFD 980
            K +AD VE+LIGA     G   A+  ++  GL +     +   K + +V     L D   
Sbjct: 1143 KMLADVVESLIGAAYEHGGFDLAIDCVARFGLGISWKKLSERIKEMHEVEDLVDLPDQLA 1202

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE-RA 1039
              E+ +NY+FK +++L+QA+THASY  ++     +RLEFLGD+ LD ++T +LY  E + 
Sbjct: 1203 LVEQMLNYQFKRRTFLVQALTHASYQGDSAVMSLERLEFLGDSALDMVVTDYLYHAEGKN 1262

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVR-------------LGFH----------HFFKHLSP 1076
            +SPG +   + A VN+ I A + +              LG            H ++ L  
Sbjct: 1263 YSPGYMHIKKEAAVNSHILAYVCLSTSVTVESVMPTWTLGGGLATTDDSQKVHLWQCLLH 1322

Query: 1077 GLHEVIQ-------RFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
              H V++       RF K        L ++             ++ PK + D+ ES+ GA
Sbjct: 1323 SSHRVLEDQNLTFARFEKHGPAIAQALREDRIYPWAAL---TSLQAPKFISDMVESILGA 1379

Query: 1130 IYLDSGMSLDTVWKVYYEI-MKSEIERLSV 1158
            +Y+DS  SLD V  V   + +   IER+ +
Sbjct: 1380 VYVDSMGSLDAVRGVMRSLGLMQVIERVVI 1409



 Score = 49.7 bits (117), Expect = 0.011,   Method: Compositional matrix adjust.
 Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 1/70 (1%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLET+GD+ LK+  +  LY  +P  HEG LS  +   V+N +L K   +K   + +I  
Sbjct: 1031 QRLETLGDTVLKFTSSNQLYAEFPLWHEGYLSRKKDHAVANSSLAKEAVKKGLYQWIIRD 1090

Query: 842  KFEPRDNWLP 851
            +F PR  W P
Sbjct: 1091 RFVPR-KWKP 1099


>gi|408393408|gb|EKJ72672.1| hypothetical protein FPSE_07072 [Fusarium pseudograminearum CS3096]
          Length = 1510

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 104/419 (24%), Positives = 157/419 (37%), Gaps = 97/419 (23%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q + +   G + +RLE +GDSFLK A TI ++   P  +E      R   + N NLF   
Sbjct: 1042 QINFQAGMGSNYERLEFLGDSFLKMATTISIFVLKPKSNECLYHVERMLLICNNNLFN-- 1099

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
                   + +  K             +P+Y+ +      F    W     PNL  L   K
Sbjct: 1100 -------TAVDCK-------------LPEYIRSL----AFDRRTW----YPNLT-LRKGK 1130

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
              +   ++C                        + DKSIAD  EALIGA  +        
Sbjct: 1131 AFKTTTRQC------------------------LADKSIADVCEALIGAAYLSSKDDN-- 1164

Query: 950  LFMSWLGLKVIPPVTNPESKHLSDVLLDGF----------------------DKFEESIN 987
                 L + V       ++K+ + +  D +                       K  ++I 
Sbjct: 1165 -----LNMAVKAVSQMCKAKYHTMMAYDEYYASFKVPDWQKASPNANQRRLVQKVADAIG 1219

Query: 988  YRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
            Y FK    L  A TH SY  +     YQRLEFLGDA++D  I  +LY +     P  LT+
Sbjct: 1220 YHFKSAPLLQSAFTHPSYTYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLTE 1279

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
             + A+ +N     L V+L  HH   HL     + I +     AE    L +E    E + 
Sbjct: 1280 HKMAMASNQFLGCLCVKLNLHH---HLLFNTSQFISKIRDYVAE--LELAEETARQEAKE 1334

Query: 1108 DEA--------EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            D               PKA  D  E++ GA+++DS      V   + + +    E +S+
Sbjct: 1335 DGTPMRMDFWLNATTPPKAYADSIEALIGAMFVDSEFDYSVVEDFFTKFIFPYFEDMSL 1393



 Score = 52.8 bits (125), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 96/425 (22%), Positives = 166/425 (39%), Gaps = 90/425 (21%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            FT ++ LP +SP+  S  G+   +KLLA   AA E C+ L   K +D+ L P  K+  + 
Sbjct: 653  FTAAVNLPSSSPIV-SQAGYPQRSKLLAKCSAAFEVCKKLINGKHIDDHLQPTFKKHFHK 711

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    +           S  ++  +  R+       RP+V      ++++ + T   P
Sbjct: 712  MRNARVGI-----------SPNKKGEHDMRL-------RPNV------WSIRGEWTHFFP 747

Query: 160  DE---QNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLS 216
                     G K  P       L +L+   +P + S P+F   G   +        V  S
Sbjct: 748  TRITLDRDDGEKNRP-------LILLSRSPLPGLPSIPLFFGNGRSAIV------EVTCS 794

Query: 217  EENLSNTLIFMDYLFTKVLKL--KKYLMLFDPNCSENSYFIVPTVSDS---EQIVIDWKF 271
            +E L  T    D L    LK+    +   F+  C +  Y + P   D+   E   IDW  
Sbjct: 795  QEPLPITTEEADGLTAFTLKIFADVFSKEFEATCDQFPYLLAPLAKDTNLNEISRIDWDT 854

Query: 272  MTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPR 331
            + L+ +H +   ++ P    ++F FD+      VV P+   +       +  I  +  P 
Sbjct: 855  VNLVRDHDSLEWENAP----DDFFFDK-----LVVDPYDGGR----KLIIKGIDKSKKPS 901

Query: 332  SMFP-----SRTNTYQTFEE---YYS----LKYGLQIQ-NLEQPLLDVDHTSCRLNFLTP 378
               P     SR+  Y++ E+    YS     K  L  Q   +QP++  +  S R N L  
Sbjct: 902  DPTPEGVPESRSRAYRSAEQNIKQYSNSLFSKSRLTAQWRDDQPVVKAELLSLRRNLLDE 961

Query: 379  RYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLN 438
              VN                  E +     ++ E   + P P  +   ++  P+I++R++
Sbjct: 962  FQVN------------------EEINNDCFVILEPLNVSPLPIDVVSMALKFPAIIHRID 1003

Query: 439  ALLLA 443
            + L+A
Sbjct: 1004 SALIA 1008


>gi|321457596|gb|EFX68679.1| hypothetical protein DAPPUDRAFT_259733 [Daphnia pulex]
          Length = 402

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 63/194 (32%), Positives = 92/194 (47%), Gaps = 25/194 (12%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            L+   KFE  ++Y   DK  LL+A TH +   +  +  YQRLE +GDA L          
Sbjct: 81   LNSLAKFENILHYTSNDKEVLLEAFTHGN---SMKSQNYQRLELIGDAAL---------- 127

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G +T LRSA V N IF   A + GFH   ++L P L +    F+++    + T
Sbjct: 128  -------GDITKLRSACVCNDIFGVWAAKYGFHEHVQNLPPILLKQFNDFLEVVERENIT 180

Query: 1096 LNQ-EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
                E  L       A  + +P  L D+FE+V GAI +D+ +S +T+ +VY   M    +
Sbjct: 181  FAPFERELAANGQIMATQVAIPSFLADVFEAVEGAIIIDANLSFETLERVYARFMTPVYD 240

Query: 1155 RLSVSVPKSPIREL 1168
                S P SP  +L
Sbjct: 241  ----SPPLSPFLQL 250



 Score = 48.1 bits (113), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 29/69 (42%), Positives = 40/69 (57%), Gaps = 6/69 (8%)

Query: 960  IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC-YQRLE 1018
            +PP +  +SK L+   L     FEE +NY F  K  LL+A+T+     N++    YQRLE
Sbjct: 297  VPPKSK-KSKPLTSNQLSAVKAFEEILNYSFNYKEVLLEALTYG----NSIRSLNYQRLE 351

Query: 1019 FLGDAILDY 1027
             +GDA LDY
Sbjct: 352  VIGDAALDY 360


>gi|259485853|tpe|CBF83228.1| TPA: Dicer-like protein 2 [Includes Endoribonuclease dcl2(EC
            3.1.26.-);ATP-dependent helicase dcl2(EC 3.6.1.-)]
            [Source:UniProtKB/Swiss-Prot;Acc:P0C5H7] [Aspergillus
            nidulans FGSC A4]
          Length = 1269

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 115/291 (39%), Gaps = 64/291 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ +   L+   PN HEG L+      V N  L +    +     +I+ 
Sbjct: 749  QRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISN 808

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +            F P+     LI     AS                             
Sbjct: 809  R------------FTPRKWSAPLISEKLYAS----------------------------- 827

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA----LLFMSWLGL 957
                             +  S+  K +AD VEALIGA  I+ G   A    + F+  + L
Sbjct: 828  ----------------ASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIEL 871

Query: 958  ---KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
               K+  P + P SK      L   +  E  I Y FKDK+ L++A+TH S   +T    Y
Sbjct: 872  PETKLPRPESMPMSKDHKKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSY 931

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
            QRLEFLGDA+LD LI   +         G +T ++ A+VN  + A L ++ 
Sbjct: 932  QRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVNGHLLAFLCMQF 982



 Score = 44.3 bits (103), Expect = 0.41,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 18/150 (12%)

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
            + +F+D  +++ A+T         TD YQR EF GD++L + +   L+ +      G LT
Sbjct: 724  DIQFQDLRHVITAITMP--LAQAPTD-YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLT 780

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            +   ALV N      A+  G   +          +  RF   +        + Y      
Sbjct: 781  ETLHALVQNARLTRAALDQGLDAYI---------ISNRFTPRKWSAPLISEKLYASASTR 831

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
               A      K L D+ E++ GA Y+D G+
Sbjct: 832  SMSA------KVLADVVEALIGAAYIDGGL 855


>gi|295094866|emb|CBK83957.1| RNAse III [Coprococcus sp. ART55/1]
          Length = 229

 Score = 88.6 bits (218), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 123/257 (47%), Gaps = 40/257 (15%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTL----TDCYQRLEFLGDAILDYLITRHLY 1034
            + + E+ I Y FKD   L+ A+TH S F N L    T+ Y+RLEFLGDAIL+Y+++ +L+
Sbjct: 5    YGELEKRIGYEFKDIRLLITALTHTS-FANELKVNKTESYERLEFLGDAILEYIVSDYLF 63

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
              +R +  G LT LR++LV     + ++  LG+  F   LS G  +   R  K       
Sbjct: 64   RKKREYEEGKLTKLRASLVCEFTLSQISESLGYGKFVL-LSKGEAQTGGRTRK------- 115

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
                                    L DLFESV GA+YLD GM  D   K  ++ +  ++E
Sbjct: 116  ----------------------SILCDLFESVLGAMYLDGGM--DVAKKFVHQFLLDDVE 151

Query: 1155 RLSVSV-PKSPIRELLELEPENARFSK-PEKLADGRRVRVTVEVF-GKGSYKGIGRNYCI 1211
              S+    KS ++E  +   +  ++    EK  +  ++ V+  +  G+ + +G G N   
Sbjct: 152  TKSLFYDAKSTLQEFCQKNGKELKYELIEEKGPEHNKIFVSDALIDGQATARGEGSNRKN 211

Query: 1212 AKCTAAKCALKHLKSAK 1228
            ++  AA   L  L+  +
Sbjct: 212  SEQMAAYKTLLQLRKKQ 228



 Score = 41.2 bits (95), Expect = 3.3,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 45/78 (57%)

Query: 769 FQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
           F  +L+ +   S +RLE +GD+ L+Y ++ +L+       EGKL+ LR+  V  + L ++
Sbjct: 31  FANELKVNKTESYERLEFLGDAILEYIVSDYLFRKKREYEEGKLTKLRASLVCEFTLSQI 90

Query: 829 GKQKVFGESMIATKFEPR 846
            +   +G+ ++ +K E +
Sbjct: 91  SESLGYGKFVLLSKGEAQ 108


>gi|343428057|emb|CBQ71581.1| related to cell cycle control protein dicer [Sporisorium reilianum
            SRZ2]
          Length = 1683

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 56/172 (32%), Positives = 83/172 (48%), Gaps = 9/172 (5%)

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            G D  +   ++ ++     L+A TH S  L ++   YQRLEFLGDA LD+ I R ++ + 
Sbjct: 1330 GLDHLQSLFDHTYRYPHLGLEAFTHPS-LLASVLPSYQRLEFLGDAWLDFCIVRMIFAEG 1388

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
               SPG +T  +  L +N    +L VRLG H F    S  L + I R+       D    
Sbjct: 1389 EERSPGEMTAHKGVLASNGALGALGVRLGLHAFVASDSAVLGDSIARYAAALGSVDEKGQ 1448

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                L  G       + VPKA+ D+ E+   +I +DSG     V +V +E+M
Sbjct: 1449 YWTRLARG-------VVVPKAVADVVEASFASIVVDSGFDARVVQRV-FELM 1492



 Score = 40.4 bits (93), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 47/92 (51%), Gaps = 3/92 (3%)

Query: 2   DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSI--MFTCSIRLPINSPLKRSVTGH 59
           ++A  +V+ Y A L S+          +  I     +   F+C++ LP  S + RSV   
Sbjct: 704 EDAPSLVSHYAATLHSEYLKDAVLAYKLDSIPHGFGVPSTFSCTLELPSTSAV-RSVESG 762

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMP 91
           +  +K  A R+ A +AC+ L ++ ELD+ LMP
Sbjct: 763 EYRSKKQAKRMVAFKACQQLRDMGELDDYLMP 794


>gi|158706440|sp|P0C5H7.1|DCL2_EMENI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
          Length = 1429

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 115/291 (39%), Gaps = 64/291 (21%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ +   L+   PN HEG L+      V N  L +    +     +I+ 
Sbjct: 909  QRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISN 968

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +            F P+     LI     AS                             
Sbjct: 969  R------------FTPRKWSAPLISEKLYAS----------------------------- 987

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA----LLFMSWLGL 957
                             +  S+  K +AD VEALIGA  I+ G   A    + F+  + L
Sbjct: 988  ----------------ASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIEL 1031

Query: 958  ---KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
               K+  P + P SK      L   +  E  I Y FKDK+ L++A+TH S   +T    Y
Sbjct: 1032 PETKLPRPESMPMSKDHKKPHLIQQENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSY 1091

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
            QRLEFLGDA+LD LI   +         G +T ++ A+VN  + A L ++ 
Sbjct: 1092 QRLEFLGDAVLDMLIVDLIRAHHVECQQGEMTKIKHAIVNGHLLAFLCMQF 1142



 Score = 44.3 bits (103), Expect = 0.44,   Method: Compositional matrix adjust.
 Identities = 37/150 (24%), Positives = 61/150 (40%), Gaps = 18/150 (12%)

Query: 987  NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLT 1046
            + +F+D  +++ A+T         TD YQR EF GD++L + +   L+ +      G LT
Sbjct: 884  DIQFQDLRHVITAITMP--LAQAPTD-YQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLT 940

Query: 1047 DLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
            +   ALV N      A+  G   +          +  RF   +        + Y      
Sbjct: 941  ETLHALVQNARLTRAALDQGLDAYI---------ISNRFTPRKWSAPLISEKLYASASTR 991

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
               A      K L D+ E++ GA Y+D G+
Sbjct: 992  SMSA------KVLADVVEALIGAAYIDGGL 1015


>gi|358380675|gb|EHK18352.1| hypothetical protein TRIVIDRAFT_47151 [Trichoderma virens Gv29-8]
          Length = 1386

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 163/397 (41%), Gaps = 106/397 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+E +GDS LK+   I +   YP+  EG LSH R + +SN  L K            A 
Sbjct: 942  ERVELLGDSILKFFTCIRVAAEYPDYPEGYLSHKRDRLISNARLHK-----------TAL 990

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F+           +P++L T      F    W  L L        + VL+ ++Q+ ++ 
Sbjct: 991  EFK-----------LPRFLNTK----PFTGQKWRPLYL--------DAVLDEVRQEGLE- 1026

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                        P +   +  I  K++AD VEALIG   ++     A+  +S     +  
Sbjct: 1027 ------------PTS--QKRKISTKTLADMVEALIGVSYVDGHLDKAVKCIS-----LFL 1067

Query: 962  PVTNPESKHLSDVLLDGFDK-------------FEESINYRFKDKSYLLQAMTHASYFLN 1008
            P TN  S  + +   + FDK              E  I Y F+ K+ L++A+THASY   
Sbjct: 1068 PETNWTS--VENDRRNIFDKVPADEPLPPTLEPLEGLIGYSFQKKALLIEALTHASYAAE 1125

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF- 1067
            T     +RLEF+GDA+LD +I   L+  +       +  L++ LVN    A + +  G  
Sbjct: 1126 TGKRSLERLEFIGDAVLDNIIVTKLFNVKPELPHFRMHTLKTGLVNGDFIAFMTMERGLK 1185

Query: 1068 -------------------------HHFFKHLSPGLHEVIQRFVKMQAEN-DFTLNQEYY 1101
                                      H   H+   + E ++R   ++ E  D   N  +Y
Sbjct: 1186 LTEKIVTEDGTLKSEEMMSYLWTFMRHNSMHIGIEMKETMKRHAALRGEILDEMENGTHY 1245

Query: 1102 ---LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
               L+         +   K   D+FE++ GA+++DSG
Sbjct: 1246 PWALLAA-------LNPKKFFSDVFEAILGAVWVDSG 1275


>gi|50897087|dbj|BAD34724.1| Dicer-related RNase III protein Dcl1p [Tetrahymena thermophila]
          Length = 1275

 Score = 88.2 bits (217), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 76/266 (28%), Positives = 135/266 (50%), Gaps = 29/266 (10%)

Query: 973  DVLLDGFDKFEESINYRFKDKSYLLQAMT-HASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
            D+ + GF+K    +NY FKDKS L++A+  H++         YQ LEFLGDA+++ L+  
Sbjct: 1008 DIAISGFEKI---LNYTFKDKSLLIKALNCHSNSNFEHYFQDYQILEFLGDALIEILVVS 1064

Query: 1032 HLYE-----DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            H Y       ++ +SP    +++S L++N   + +A+   FH++  ++S    + I +F+
Sbjct: 1065 HGYHISRNRQKKINSPYFFCEMKSLLLSNDFMSRMAILNKFHYYALNISKYQQDEIIQFI 1124

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
            +     D  LN ++   E    +A     PK LGDL+ESVAGAI +DS +S  T   +Y 
Sbjct: 1125 E-----DCNLNTKF--KESVSHQANS---PKVLGDLWESVAGAIIMDSDIS--TFVSIYG 1172

Query: 1147 EIMKSEIERLSVSVPK--SPIRELLELEPEN-----ARFSKPEKLADGR-RVRVTVEVFG 1198
            ++    I        K    ++E ++L  +       + ++  K  DG+ +V+VT+ +  
Sbjct: 1173 KLYAPYIIHFVTFYQKIIFNVKEKVQLVAQQTYEQLGKITEVVKDTDGQYKVKVTILIKQ 1232

Query: 1199 KGSYKGIGRNYCIAKCTAAKCALKHL 1224
                 GI  +  +A+  A + A  H+
Sbjct: 1233 IKVGTGIDYSETLAEKKAFQDAYDHI 1258



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 39/150 (26%), Positives = 66/150 (44%), Gaps = 15/150 (10%)

Query: 992  DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
            D   L+++ +  SY   + T   + LE +GD ++ Y+ + +LY      S   LT +R+ 
Sbjct: 732  DLELLIESFSQISY---SKTKNLELLEVIGDVVIKYISSLYLYLHLPNQSENALTMIRTI 788

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
             +NN      A R G   + +   P  ++   RF      N F LN      E   D+ +
Sbjct: 789  FINNKYLGISAFRNGLQFYVQTKRPSSYDW--RF------NLFNLNS---FTEAPQDQKQ 837

Query: 1112 DIEVPKA-LGDLFESVAGAIYLDSGMSLDT 1140
              ++  + L D  ESV G  Y  +  +L+T
Sbjct: 838  SFQLSYSNLSDTLESVVGCFYASNQFTLNT 867


>gi|358370394|dbj|GAA87005.1| dicer-like protein 2-1 [Aspergillus kawachii IFO 4308]
          Length = 1396

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 87/290 (30%), Positives = 123/290 (42%), Gaps = 75/290 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E  GDS LK+ ++  L+  +PN HEG LS  R + V N  L +              
Sbjct: 950  QRYEFFGDSVLKFTVSCQLFFQHPNWHEGYLSQGRDEIVQNSRLAR-------------- 995

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                                 A ++AG  A + N +  P  K  +P     +I +K    
Sbjct: 996  ---------------------AALDAGLDAFIMNKMFTPR-KWTAP-----LISEKI--- 1025

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGL 957
                     S+ P     Q ++  K +AD VEALIGA  I+ G   A      F+  + L
Sbjct: 1026 ---------SLTP----KQRTMSTKVLADVVEALIGASYIDGGFAAAHACIHRFLPEVNL 1072

Query: 958  KVIPPVTN-----PE--SKH-LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
            + I   T      PE  +KH L+D      D     I Y F  KS L++++TH S   +T
Sbjct: 1073 EHIDRTTTTAPSTPEGTTKHTLND------DHLMTHIGYTFTHKSLLVESLTHPSCQFDT 1126

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA 1059
             T  YQRLEFLGDA+LD  I   L         G +T ++ A+VN  + A
Sbjct: 1127 TTQSYQRLEFLGDAVLDMAIMSTLLSHPHEIPQGQMTKIKHAVVNANLLA 1176


>gi|119487463|ref|XP_001262524.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
 gi|158705692|sp|A1D9Z6.1|DCL2_NEOFI RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119410681|gb|EAW20627.1| RNA helicase/RNAse III, putative [Neosartorya fischeri NRRL 181]
          Length = 1388

 Score = 87.8 bits (216), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 112/427 (26%), Positives = 175/427 (40%), Gaps = 112/427 (26%)

Query: 749  KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVH 808
            KS +H II   STP      F   L N+     +R E +GDS LK++++  L+  +PN H
Sbjct: 933  KSTDH-IITAISTP------FAHALTNY-----QRYEFLGDSILKFSVSCQLFFQHPNWH 980

Query: 809  EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAG 868
            EG LS  R+  V N  L K        ++ I TK      W  P   + + LE       
Sbjct: 981  EGYLSEGRAMIVQNPRLAKAALDTGL-DAYIVTKRIASRKWSAP--LISEKLE------- 1030

Query: 869  FPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSI 928
                      +P  +++S  KVL                                     
Sbjct: 1031 ---------RVPAKRQMS-TKVL------------------------------------- 1043

Query: 929  ADCVEALIGAYLIECGPRGALLFMSWL----GLKVIPPVT-----NPES-KHLSDVLLDG 978
            AD VEALIGA  ++ G   A   +  L     L  +   T      PES +H+ +     
Sbjct: 1044 ADVVEALIGAAYMDGGHATAQACIRRLLPEINLHAVDTRTATRSVAPESARHMMN----- 1098

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             ++ ++ I Y F+D+S L++A+TH S   ++ T  YQRLE+LGDA+LD +I   ++    
Sbjct: 1099 -ERLKDHIGYTFEDESLLVEALTHPSCDYDSTTQSYQRLEYLGDAVLDMVIVSAIFNHPI 1157

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAV-------RLGFHHFFK---HLSPGLHEV-IQRFVK 1087
                G +T ++ A+VN  + A L +       +L      K    ++     V + RF++
Sbjct: 1158 QRPQGDMTKIKHAVVNANLLAFLCMESATSEEKLDVAQTSKDSFAVTTSQESVELWRFMR 1217

Query: 1088 MQAEN-----DFTLNQEYYLMEGECDE-----------AEDIEVPKALGDLFESVAGAIY 1131
             + +N     D +L +   L +                   +   K   D+ ESV GAI+
Sbjct: 1218 YRGQNLNAARDASLARHRALRDEIASSLLHAPHYPWHALSRLNADKFFSDIVESVLGAIF 1277

Query: 1132 LDSGMSL 1138
            +DSG  L
Sbjct: 1278 VDSGGDL 1284


>gi|115401870|ref|XP_001216523.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
 gi|114190464|gb|EAU32164.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
          Length = 1635

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 110/471 (23%), Positives = 186/471 (39%), Gaps = 118/471 (25%)

Query: 777  TGPSP---KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKV 833
            T  SP   +R E  GDS LK+ ++  LY  +PN  EG LS  R + V N  L +      
Sbjct: 917  TAQSPTDYQRYEFFGDSVLKFTVSCQLYMQHPNWPEGYLSEGRDEIVQNNRLARAALDVG 976

Query: 834  FGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEI 893
                ++  +F PR  W  P                                L  EK +E+
Sbjct: 977  LDAFILTRRFTPR-KWTAP--------------------------------LISEKAVEV 1003

Query: 894  IKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS 953
              ++                         +  K +AD VE+LIGA  ++ G   A   + 
Sbjct: 1004 AGKR------------------------PLSSKVLADVVESLIGAAYMDGGQAKAHTCIR 1039

Query: 954  WLGLKV-IPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
             L  ++ I P+T P     +  +++  D  ++ + Y F +++ L++A+TH S   +  T 
Sbjct: 1040 RLLPEIEICPITPPPVHESAPHVMN--DSLKQHLGYTFVNEALLVEALTHPSCRSDASTQ 1097

Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA------------- 1059
             YQRLEFLGDA+LD ++   +         G +T ++ AL N  + A             
Sbjct: 1098 SYQRLEFLGDAVLDMVVVHAMAHHAVECPQGEMTMIKHALTNANLLAFFCMEFVVAQEHT 1157

Query: 1060 ---------SLAVR-----LGFHHFFKH----LSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
                       A+R     +    F +     L+     V+ R  +++AE    ++  ++
Sbjct: 1158 DVDAVPAAGGFALRSEQKPIELWRFMRSEALDLNNARETVLHRHSQLRAE---IVHALHH 1214

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
              +        +   K   D+ ES+ GAI++DS   LD        +    +ER+ + +P
Sbjct: 1215 GAQYPWQALSQLNADKFFSDIVESILGAIFVDSRGDLD--------VCAMFVERIGL-LP 1265

Query: 1162 KSPIRELLE-----LEPENA--RFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
               +R +L      + P +   R SK E L   +RV   V+  G  SY+ +
Sbjct: 1266 Y--LRRILADRVDVMHPRHTAQRLSKGEALFTAKRV---VDGSGNASYRCV 1311


>gi|425768112|gb|EKV06652.1| Dicer-like protein 2 [Penicillium digitatum Pd1]
 gi|425769791|gb|EKV08273.1| Dicer-like protein 2 [Penicillium digitatum PHI26]
          Length = 796

 Score = 87.4 bits (215), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 79/257 (30%), Positives = 118/257 (45%), Gaps = 41/257 (15%)

Query: 919  TQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGLKV--IPPVTNPESKHLS 972
             + SI  K +AD VE+LIGA  ++ G R A      F+  + L    I P+T P SK  S
Sbjct: 445  AKRSISTKVLADVVESLIGAAYVDGGIRKAQACLHRFLPEIDLFTTEISPLTLPPSKGAS 504

Query: 973  DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH 1032
             ++     +    I Y FKD + L +A+THAS   +T T  YQRLEFLGDA+LD ++   
Sbjct: 505  SLI--NHHRLAGLIGYTFKDPALLTEALTHASCEYDTSTQSYQRLEFLGDAVLDMVVMAV 562

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRL--------------GFHHFFKHLSPGL 1078
            +         G +T L+ ++VN  + A   + L              G  +F  H    +
Sbjct: 563  IAAHPVEMDQGPMTLLKHSVVNANLLAFFCMELCAPDEPTHVPQFANGEINFVPHQGQ-I 621

Query: 1079 HEVIQRFVKMQAEN-----DFTLNQEYYLMEGECDEAED-----------IEVPKALGDL 1122
            H  + RF++    N     +  L + + L +   D  E            +   K L D+
Sbjct: 622  H--LWRFLRSHGPNVKSAREACLERHHGLRDEIRDALEHGSQYPWELFARLRADKFLSDI 679

Query: 1123 FESVAGAIYLDSGMSLD 1139
             ESV GAI++D G +LD
Sbjct: 680  VESVLGAIFIDCGGNLD 696



 Score = 48.1 bits (113), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 68/166 (40%), Gaps = 23/166 (13%)

Query: 979  FDKFEES-INYRFKD---KSYLLQAMTHA----SYFLNTLTDCYQRLEFLGDAILDYLIT 1030
             D+ E S + +R  D   K   +Q + H     S  +   +  YQR EF GD++L + ++
Sbjct: 321  LDRLEASLVAHRLNDTILKGVGIQNIDHVITAISAPIAQASTNYQRFEFFGDSVLKFTVS 380

Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090
              L+        G L++ R  LV N   A  A+ +G   F          +  RF   + 
Sbjct: 381  CQLFFRNTNWHEGYLSESRDKLVQNTRLAHAALDIGIDCFI---------LTSRFTPRKW 431

Query: 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                  N+       E   A+     K L D+ ES+ GA Y+D G+
Sbjct: 432  AAPLIRNKL------EASTAKRSISTKVLADVVESLIGAAYVDGGI 471


>gi|358348326|ref|XP_003638198.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
 gi|355504133|gb|AES85336.1| Endoribonuclease Dicer-like protein, partial [Medicago truncatula]
          Length = 472

 Score = 87.4 bits (215), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 73/263 (27%), Positives = 121/263 (46%), Gaps = 12/263 (4%)

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            E+K++   + D     E+ I Y F++K+ L +A+TH+SY  +     Y+RLEF+GDA+L 
Sbjct: 102  ETKNMKMKMEDSVAAVEKIIGYTFRNKNLLEEALTHSSYPESV---SYERLEFIGDAVLG 158

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
            + I+ HL+          L+ LRSA V+    A  AV    H + +  +  L E I+ F 
Sbjct: 159  HAISNHLFLVYTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFA 218

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYY 1146
                +      +   L  G       ++ PK L D+ ESVA A+Y+D    L  +W V  
Sbjct: 219  AAVEQEK---GRAIVLYGGA------VKAPKVLADVVESVAAAVYVDLDFDLKKLWVVIR 269

Query: 1147 EIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIG 1206
             +++  +    +     P+  L E+  +N +        +G +   +V V G+       
Sbjct: 270  GLLEPIVTLNDLEQKPQPVTMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASS 329

Query: 1207 RNYCIAKCTAAKCALKHLKSAKP 1229
                IAK  AAK A++ L+   P
Sbjct: 330  DQKDIAKLDAAKSAVQKLERVLP 352


>gi|297804712|ref|XP_002870240.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
 gi|297316076|gb|EFH46499.1| ribonuclease III family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 214

 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 62/171 (36%), Positives = 90/171 (52%), Gaps = 16/171 (9%)

Query: 973  DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH 1032
            D LL+  +  E+ +NY+FKDK  L+QA T ASY ++   D Y+ LE LGD+IL+  I   
Sbjct: 25   DQLLE-IESLEKILNYKFKDKRLLVQAFTDASY-VDDKCDSYEILELLGDSILNMSIIDE 82

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
              +     SPG LT LR+  V+    A +AV+   + + +H  P L E I  FV  +A  
Sbjct: 83   FIKLYPKESPGPLTKLRAVNVDTEKLARVAVKHQLYRYLRHKKPLLEEQILEFV--EAME 140

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
             + L+    L           +VPK L D+ ES  GA++ D   S +TVW+
Sbjct: 141  KYPLHSNGLL-----------KVPKVLADIVESTIGALFRDCN-STETVWE 179


>gi|163814044|ref|ZP_02205436.1| hypothetical protein COPEUT_00197 [Coprococcus eutactus ATCC 27759]
 gi|158450493|gb|EDP27488.1| ribonuclease III [Coprococcus eutactus ATCC 27759]
          Length = 232

 Score = 86.7 bits (213), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 57/162 (35%), Positives = 84/162 (51%), Gaps = 35/162 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTL----TDCYQRLEFLGDAILDYLITRHLY 1034
            +D+ E+ I Y+FKD + L+ A+TH S F N L    TD Y+RLEFLGDAIL+Y+++ +L+
Sbjct: 8    YDELEKKIGYQFKDINLLITALTHTS-FANELKVNKTDSYERLEFLGDAILEYIVSEYLF 66

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
              ++ +  G LT LR++LV     + ++  LG+  + + LS G      R  K       
Sbjct: 67   LKKKEYEEGRLTKLRASLVCEFTLSQISESLGYGDYVR-LSKGEELTGGRKRK------- 118

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                                    L DLFESV GA+YLD G+
Sbjct: 119  ----------------------SILCDLFESVLGAMYLDGGI 138


>gi|218196456|gb|EEC78883.1| hypothetical protein OsI_19246 [Oryza sativa Indica Group]
 gi|222630918|gb|EEE63050.1| hypothetical protein OsJ_17858 [Oryza sativa Japonica Group]
          Length = 350

 Score = 86.7 bits (213), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 50/303 (16%)

Query: 962  PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
            PV  P    ++D   +   + E  + Y+F+D   L +A+TH S+  + ++  YQRLEF+G
Sbjct: 21   PVELPPPGFVAD-RAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVS--YQRLEFVG 77

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            D+ L    +  LY       PG L+ LR+A ++    A +AVR   +   +   P L  +
Sbjct: 78   DSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLL 137

Query: 1082 IQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            + +F   VK + E+D  L+   Y           ++ PK L D+ E++A A+Y+D    L
Sbjct: 138  VGQFIETVKQEPEDD--LSTVPY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDL 188

Query: 1139 DTVWKVYYEIMKSEIERLSV-------------------------------SVPKSPIRE 1167
            + +WK    +   +  R +V                               ++ + P+  
Sbjct: 189  EKLWKRLTWLHGLQEIRWTVNTNNIKDWINNFIYGKRLVTRWLFEPIITAETIDEQPVTM 248

Query: 1168 LLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLK 1225
            L EL  ++ + ++ +    G      V VF  G   GIG +    IAK  AA+ A + L 
Sbjct: 249  LHELCQKHGKMAQFKTWQKGG--MTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLA 306

Query: 1226 SAK 1228
             AK
Sbjct: 307  GAK 309


>gi|449295521|gb|EMC91542.1| hypothetical protein BAUCODRAFT_570103 [Baudoinia compniacensis UAMH
            10762]
          Length = 1569

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 151/387 (39%), Gaps = 80/387 (20%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + ++  G + +RLE IGD+FLK A +I  +   PN +E +    R   + N NLF + K+
Sbjct: 1075 NFQHGMGENYERLEFIGDTFLKTATSISTFIQNPNDNEFEFHVKRMLMLCNQNLFNVAKE 1134

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W P G                       L L   K  + ++  
Sbjct: 1135 LKLYEYVRSIAFS-RRLWYPEG-----------------------LKLLEGKGANKQEET 1170

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALL 950
             +IK                         HS+ +K+IAD  EALIGA Y+    P     
Sbjct: 1171 SVIK-------------------------HSLGEKTIADVCEALIGAAYVTHDRPGDQWQ 1205

Query: 951  FMSWL-GLKVIPPVTNP--------------------ESKHLSDVLLDGFDKFEESINYR 989
               W   ++ +  + N                     ++  +S    D  +K E    Y 
Sbjct: 1206 PSHWENAVRAVTRLVNSADHTMLTWSDYIAAYEKPSYQTGEVSASQRDLAEKVEREHPYH 1265

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            FK    L  A  H S   +      YQRLEFLGDA+LD     +L+       P  LT+ 
Sbjct: 1266 FKYPRLLRSAFIHPSQPVMYEKVPNYQRLEFLGDALLDMASIAYLFHRYPDRDPQWLTEH 1325

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGL-HEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
            + A+V+N    ++ V +GFH   +H S  L H++    +++        + + Y      
Sbjct: 1326 KMAMVSNKFLGAVCVNVGFHLHLRHSSAILQHQIADYAIELLETKRVAGDAKDYWTTVS- 1384

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDS 1134
                  + PK L D+ E+  GA ++DS
Sbjct: 1385 ------DPPKCLPDIVEAYVGAAFIDS 1405



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 109/469 (23%), Positives = 179/469 (38%), Gaps = 94/469 (20%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            NA+  +  + + +P+D    L P   ++   E     F   + LP N+P+ RS  G    
Sbjct: 640  NALVCLANFISSIPTDTDDMLQPTYIVNSHGEK----FVAEVLLPGNAPI-RSAIGKVCT 694

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             KLLA   AA EACR L   + LD  LMP+ ++ +    N    V          +    
Sbjct: 695  KKLLAKCSAAWEACRELRRKEYLDEHLMPIYQKKLPAMRNALLAV----------NMKTT 744

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
              +  K   S +   R ++ +  Y+  +        PD         HP  N P  LA+L
Sbjct: 745  NMYVMKTKPSMWEQTRGTLPSKLYVSMID------FPDGLE------HP--NRP--LALL 788

Query: 183  TTKYIPKVCSFPIFTRCGE-VEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
            T   +P   +FP+F   G    V   + D+ + ++E+ L     F   +F  V     + 
Sbjct: 789  TRPPMPHFPAFPVFLTDGRPSSVRSSVFDQPIGVNEQQLDKLSAFTYRIFKDV-----FS 843

Query: 242  MLFDPNCSENSYFIVPTVSDSE-------------QIVIDWKFMTLISEHHNDVIQDIPE 288
              +D   +  SY++ P  +  E                IDW  +  +  H     +  P 
Sbjct: 844  KTYDYQPAHLSYWLGPAKAGLELSKMSGNAQNFEASNAIDWALVDEVFTHEE--YKWTPG 901

Query: 289  KERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN--------- 339
             +  NF+ D  KF   VV  W  ++     F+   +  ++ P    P  T          
Sbjct: 902  AD-SNFLVD--KF---VVDSWDGSR----KFFSIAVCRDMKPLDPVPPDTAKAKWDANIL 951

Query: 340  --TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL-TPRYVNRKGINLATTSEETR 396
              +   F++  + + G    NL+QP+L+      R N L TP    +K + L T      
Sbjct: 952  EYSNSLFKQARARREG--TWNLDQPVLEAVKILLRRNMLATP---EKKELTLRT------ 1000

Query: 397  REIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
                     K  L PE   I   P ++     + P+I++RL + L+A E
Sbjct: 1001 ---------KAFLCPEPLRISALPPAVATSCFAWPAIIHRLESYLIALE 1040


>gi|388857965|emb|CCF48410.1| related to cell cycle control protein dicer [Ustilago hordei]
          Length = 1752

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 106/414 (25%), Positives = 162/414 (39%), Gaps = 115/414 (27%)

Query: 773  LENHTGPSP------KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
            LE  T PS       +RLE +GD+FLK   T   + T+    E +L       V+N  L 
Sbjct: 1168 LEALTSPSAGSAFDYERLEFLGDTFLKLIATCHTFTTHLGRTEAELHMANKGIVTNVRLL 1227

Query: 827  KLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELS 886
            K  K+    +  I          LP    +P+   TA +      +L N  S+       
Sbjct: 1228 KEAKRLGLEKYAI----------LPSCNLLPRRF-TAPVICNVGGALTNDPSM------- 1269

Query: 887  PEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYL------ 940
                         D D  VD+               + +K+++D VE+LIGA L      
Sbjct: 1270 -------------DHDGQVDV---------------VKEKTLSDIVESLIGAALLSPSSS 1301

Query: 941  ------------------IECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKF 982
                              + C       F      ++ PP      +HL  +        
Sbjct: 1302 SPSSSSPFFLLPFLSFLHVYCA------FQRNWSSRLNPPSL----RHLQSLF------- 1344

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH-- 1040
              S  YR+   +  L++ TH S  L ++   YQRLEFLGDA +D+ I   +Y +      
Sbjct: 1345 --SHTYRYPHLA--LESFTHPS-LLASILPSYQRLEFLGDAWIDFFIVSRIYTEGGGLVV 1399

Query: 1041 -SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
              PG +T L+  L +N   ++L V+LG H F    S  L E I ++ K           E
Sbjct: 1400 LDPGEMTALKGVLASNAALSALGVKLGLHKFIASNSAVLVESIAKYGK---------GLE 1450

Query: 1100 YYLMEGECD-----EAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI 1148
              L +G  +     +A  ++VPKA+ D+ E+   +I +DSG   DT  +V+  I
Sbjct: 1451 KVLRKGGGEGQYWTKAGMVQVPKAVADVVEASFASIVVDSGFDQDTAQRVFGRI 1504


>gi|115462923|ref|NP_001055061.1| Os05g0271300 [Oryza sativa Japonica Group]
 gi|50878449|gb|AAT85223.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|55908895|gb|AAV67838.1| unknown protein [Oryza sativa Japonica Group]
 gi|113578612|dbj|BAF16975.1| Os05g0271300 [Oryza sativa Japonica Group]
          Length = 344

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/303 (25%), Positives = 132/303 (43%), Gaps = 50/303 (16%)

Query: 962  PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLG 1021
            PV  P    ++D   +   + E  + Y+F+D   L +A+TH S+  + ++  YQRLEF+G
Sbjct: 15   PVELPPPGFVAD-RAEAAARVERLLRYQFRDGRLLEEALTHQSFADDAVS--YQRLEFVG 71

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            D+ L    +  LY       PG L+ LR+A ++    A +AVR   +   +   P L  +
Sbjct: 72   DSALGLAFSNFLYLTNPTLGPGPLSTLRAANISTEKLARVAVRHDLYPLLRRNCPRLDLL 131

Query: 1082 IQRF---VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            + +F   VK + E+D  L+   Y           ++ PK L D+ E++A A+Y+D    L
Sbjct: 132  VGQFIETVKQEPEDD--LSTVPY-------GGSVVKAPKVLADIVEAIAAAVYVDCKFDL 182

Query: 1139 DTVWKVYYEIMKSEIERLSV-------------------------------SVPKSPIRE 1167
            + +WK    +   +  R +V                               ++ + P+  
Sbjct: 183  EKLWKRLTWLHGLQEIRWTVNTNNIKDWINNFIYGKRLVTRWLFEPIITAETIDEQPVTM 242

Query: 1168 LLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN--YCIAKCTAAKCALKHLK 1225
            L EL  ++ + ++ +    G      V VF  G   GIG +    IAK  AA+ A + L 
Sbjct: 243  LHELCQKHGKMAQFKTWQKGG--MTVVNVFVAGELVGIGSSEQKVIAKLNAARDATRKLA 300

Query: 1226 SAK 1228
             AK
Sbjct: 301  GAK 303


>gi|367055364|ref|XP_003658060.1| hypothetical protein THITE_2033760, partial [Thielavia terrestris
            NRRL 8126]
 gi|347005326|gb|AEO71724.1| hypothetical protein THITE_2033760, partial [Thielavia terrestris
            NRRL 8126]
          Length = 1118

 Score = 86.3 bits (212), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/295 (30%), Positives = 119/295 (40%), Gaps = 65/295 (22%)

Query: 778  GPSP-KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG- 835
            GP+  +R+E +GDS LK+  TI     Y    EG LS L+ K VSN  LF+   +  FG 
Sbjct: 870  GPTDYERIEFLGDSILKFCTTINCAAKYLKYPEGCLSPLKDKIVSNSRLFRAAVE--FGL 927

Query: 836  ESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIK 895
            +  I  K      W P       Y+E  L+E   PA+    LS                 
Sbjct: 928  DRYIVHKTLTLHKWRP------TYVED-LLENPPPATRTRMLS----------------- 963

Query: 896  QKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS-- 953
                                          K++AD VEALI A  I  G   AL  MS  
Sbjct: 964  -----------------------------TKTLADVVEALIAASYISGGIPKALACMSLF 994

Query: 954  -----WLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
                 W  ++    +   E+ H  + L       E  I Y F  K+ L++AMTH S    
Sbjct: 995  LPEFEWKSIEQGREILYNEAPH-DEPLPVTMRPLESLIGYTFTKKALLVEAMTHPSCTGP 1053

Query: 1009 TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
             +     RLEFLGDAILDY++   L+ D       TL  LR+ALVN  I   L +
Sbjct: 1054 GIRASLDRLEFLGDAILDYIVVNRLFSDPAGLDNSTLHLLRTALVNADILGFLVM 1108



 Score = 43.9 bits (102), Expect = 0.55,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 53/123 (43%), Gaps = 12/123 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+R+EFLGD+IL +  T +       +  G L+ L+  +V+N      AV  G   +  H
Sbjct: 874  YERIEFLGDSILKFCTTINCAAKYLKYPEGCLSPLKDKIVSNSRLFRAAVEFGLDRYIVH 933

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
             +  LH+    +V+   EN     +   L              K L D+ E++  A Y+ 
Sbjct: 934  KTLTLHKWRPTYVEDLLENPPPATRTRMLST------------KTLADVVEALIAASYIS 981

Query: 1134 SGM 1136
             G+
Sbjct: 982  GGI 984


>gi|452003006|gb|EMD95463.1| hypothetical protein COCHEDRAFT_1026333 [Cochliobolus heterostrophus
            C5]
          Length = 1592

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 117/486 (24%), Positives = 194/486 (39%), Gaps = 85/486 (17%)

Query: 784  LETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LGKQKVFGESMIAT 841
            LE +GD FLK A ++ ++   P+ +E +    R + + N NL +  +G +KV        
Sbjct: 1116 LEFLGDCFLKMATSLSVFVQQPDENEFEFHVRRMEMLCNKNLMETAVGNKKVVSPEGTEK 1175

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
              +           + KY+ T      F    W            PE  L ++K K  + 
Sbjct: 1176 DLQ-----------LYKYIRTE----SFSRRTW-----------YPEG-LRLLKGKGAN- 1207

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIE--CGPR-----------GA 948
                    +S   +  +T H++ DKSIAD  EA IGA L E   G R             
Sbjct: 1208 --------KSQDDWLKLT-HNLGDKSIADVCEAFIGATLQEHYTGDRWRPNDWDEAVKAV 1258

Query: 949  LLFMS--------WLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAM 1000
             LF +        W            ++   S  +LD   K E    Y FK    L  A 
Sbjct: 1259 KLFANSPDHTMSKWSDYYEAYQKPKYQTAEASAAMLDMARKIEMKHPYHFKYPRLLRSAF 1318

Query: 1001 THASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA 1059
             H SY ++      YQRLEF GDA+LD     HLY       P  LT+ ++ +V+N    
Sbjct: 1319 AHPSYPYMYENIPNYQRLEFAGDALLDMAFITHLYFKYPDKDPHWLTEHKTPMVSNKFLG 1378

Query: 1060 SLAVRLGFHHFFKHLSPGLHEVIQRFV--KMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117
            ++ V+LG+H + K  +  L   I+ +V    +AE +     +Y++           E PK
Sbjct: 1379 AVCVKLGWHVYIKQNTATLTNQIRDYVLEAEEAEREAGGAVDYWVTIS--------EPPK 1430

Query: 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK--------SEIERLSVSVPKSPIRELL 1169
             L D+ E+   +I++D+      V   +   +K           E+ + + P + +  LL
Sbjct: 1431 CLADVIEAYVASIFVDAEFDFGVVQTFFEMHLKPFFLDMTLDSYEKFASNHPTTRLSRLL 1490

Query: 1170 ELE------PENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKH 1223
             +          A  ++      G+ +   V + GK  +  +G++   A+  A++ AL+ 
Sbjct: 1491 TINFGCIDWRMGALETETVIPGKGKAIAAMVLIHGKVHFYSLGQSGRYARVRASQAALEK 1550

Query: 1224 LKSAKP 1229
            L+   P
Sbjct: 1551 LEGLPP 1556


>gi|340516882|gb|EGR47129.1| predicted protein [Trichoderma reesei QM6a]
          Length = 1376

 Score = 85.9 bits (211), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 159/388 (40%), Gaps = 91/388 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK+   +      P+  EG LS+ R + VSN  L+K   +  FG      
Sbjct: 934  ERLEFLGDSILKFCACMRAAAEKPDYPEGYLSYWRDRLVSNSRLYKAALE--FG------ 985

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          +P+++ T      F    W  L L            E+++Q  V  
Sbjct: 986  --------------LPRFILTK----PFTGQKWRPLYLD-----------EVLQQGDV-- 1014

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                        P     +  +  K++AD VEALIGA  ++ G   A+  +S    K +P
Sbjct: 1015 ----------ATP----EKRKLSTKTLADVVEALIGASYVDGGLSKAVTCIS----KFVP 1056

Query: 962  PVT----NPESKHLSDVLLDGFDKFEES------INYRFKDKSYLLQAMTHASYFLNTLT 1011
              +    + + + L   + DG             I Y F+ K+ L++A+THASY  +  T
Sbjct: 1057 EGSWTSVDADRESLFARVPDGEPLPPPLEPLEKLIGYTFQKKALLMEALTHASYAADFGT 1116

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH-- 1069
               +RLEF+GDA+LD +I   L+  + A     +  L++ LVN    A + +  G     
Sbjct: 1117 RSLERLEFIGDAVLDNIIVTKLFRLKPALPHFRMHTLKTGLVNGDFLAFMTMEHGVQLAA 1176

Query: 1070 ---FFKHLSPGLHEVIQRFVKMQAENDFTL-------NQEYYLMEGECDEA--EDIEVPK 1117
                 +  +  + E I        +  F +       N+ +  +  +  EA   D   P 
Sbjct: 1177 DPVVTEEATVEVPETISYLWSFLRQASFPIAIELKETNKRHAALREQIHEAMDNDDHYPW 1236

Query: 1118 AL----------GDLFESVAGAIYLDSG 1135
            AL           DLFE+V GA+++DSG
Sbjct: 1237 ALLAALSPKKFYSDLFEAVLGAVWIDSG 1264



 Score = 43.9 bits (102), Expect = 0.53,   Method: Compositional matrix adjust.
 Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 13/125 (10%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y+RLEFLGD+IL +        ++  +  G L+  R  LV+N      A+  G   F   
Sbjct: 933  YERLEFLGDSILKFCACMRAAAEKPDYPEGYLSYWRDRLVSNSRLYKAALEFGLPRF--- 989

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVP-KALGDLFESVAGAIYL 1132
                   ++ +    Q      L++   L +G+    E  ++  K L D+ E++ GA Y+
Sbjct: 990  -------ILTKPFTGQKWRPLYLDE--VLQQGDVATPEKRKLSTKTLADVVEALIGASYV 1040

Query: 1133 DSGMS 1137
            D G+S
Sbjct: 1041 DGGLS 1045


>gi|357464753|ref|XP_003602658.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
 gi|355491706|gb|AES72909.1| Endoribonuclease Dicer-like protein [Medicago truncatula]
          Length = 344

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 12/253 (4%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D     E+ I Y F++K+ L +A+TH+SY  +     Y+RLEF+GDA+L + I+ HL+  
Sbjct: 7    DSVAAVEKIIGYTFRNKNLLEEALTHSSYPESV---SYERLEFIGDAVLGHAISNHLFLV 63

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                    L+ LRSA V+    A  AV    H + +  +  L E I+ F     +     
Sbjct: 64   YTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEK--- 120

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
             +   L  G       ++ PK L D+ ESVA A+Y+D    L  +W V   +++  +   
Sbjct: 121  GRAIVLYGGA------VKAPKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLN 174

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
             +     P+  L E+  +N +        +G +   +V V G+           IAK  A
Sbjct: 175  DLEQKPQPVTMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASSDQKDIAKLDA 234

Query: 1217 AKCALKHLKSAKP 1229
            AK A++ L+   P
Sbjct: 235  AKSAVQKLERVLP 247


>gi|269123548|ref|YP_003306125.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
 gi|268314874|gb|ACZ01248.1| ribonuclease III [Streptobacillus moniliformis DSM 12112]
          Length = 233

 Score = 85.5 bits (210), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 130/269 (48%), Gaps = 68/269 (25%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY-----FLNTLTDCYQRLEFLGDAILDYLITRHL 1033
             +K    INY FK+K  LL+A+TH+SY     F N   +  +RLEFLGD+++D + T ++
Sbjct: 6    LEKLMSKINYTFKNKKLLLEALTHSSYVNEHNFPNIKDN--ERLEFLGDSVMDLITTEYI 63

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            Y++    + G L+ ++S +++  +F++++                              D
Sbjct: 64   YKNNLKSNEGELSKIKSQIISETVFSTIS-----------------------------RD 94

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
              L    +L  GE + +   E    LGD+FE++ GAIYLDS  +  T   V  ++++S+I
Sbjct: 95   LNLGNYIFLSNGE-NMSGGRERNSVLGDVFEAMVGAIYLDSDYA--TTRDVVLKLLESKI 151

Query: 1154 ERLS----VSVPKSPIRELLELE--------------PENARFSKPEKLADGRRVRVTVE 1195
              L     VS  KS ++E+ +L+              P++ +  + E       VRV   
Sbjct: 152  NNLDKIEWVSDYKSALQEITQLKYKVTPIYTVLSEIGPDHDKTFEIE-------VRVEER 204

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
            ++G    KG+ ++  +A+  AAK A++ L
Sbjct: 205  LYG----KGVAKSKKMAEKIAAKQAIEKL 229


>gi|296812107|ref|XP_002846391.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
 gi|238841647|gb|EEQ31309.1| dicer-like protein 2 [Arthroderma otae CBS 113480]
          Length = 1437

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 162/395 (41%), Gaps = 90/395 (22%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LSH +   +SN  L+K         + I T
Sbjct: 1002 QRLEFLGDSALKLHTSMQLLVDHPFWHEGLLSHKKGFIISNSRLWK---------ATIET 1052

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
              +             +++ TA         L+N     N   +      EI        
Sbjct: 1053 GLD-------------RFILTACFTGAKWRPLYNSTYTANAGRVGKNSTREI-------- 1091

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW 954
                                    K++AD VEALIGA +++ G   AL    +F+   +W
Sbjct: 1092 ----------------------STKTLADVVEALIGAAIVDGGEDKALHCLQVFLPEINW 1129

Query: 955  LGL-KVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L   K I  + +   +   +   D   K E  I+Y F  K+ L  +++H S  ++ +T  
Sbjct: 1130 LSYEKRIEMLYDASPEFHDNAPHDILSKIEPLIDYSFTKKALLATSLSHPSNPISGMT-- 1187

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD+ILD ++TR L+   +      +  +R+ALVN    A L +        + 
Sbjct: 1188 YQRLEFLGDSILDSIVTRALFRSNKEIPHQDMHLMRTALVNADYLAFLCMNTSTDEQRED 1247

Query: 1074 LSP---GLHEV--------IQRFVKMQAENDFTLNQ-----EYYLMEGECDEA------- 1110
            +S    G  E+        + +++   A  D    Q     ++  +  + DEA       
Sbjct: 1248 VSASSIGKVEITSSTRRVSLWQYMSHSAALDIANAQLATVRKFEELREKIDEALRSGTRY 1307

Query: 1111 -----EDIEVPKALGDLFESVAGAIYLDSGMSLDT 1140
                   +  PK   D+ ES+ GAI++DS  S++ 
Sbjct: 1308 PWTLLLTLNAPKFFSDIIESILGAIFIDSRGSVEA 1342


>gi|189199432|ref|XP_001936053.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
 gi|187983152|gb|EDU48640.1| conserved hypothetical protein [Pyrenophora tritici-repentis
            Pt-1C-BFP]
          Length = 1439

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 131/521 (25%), Positives = 209/521 (40%), Gaps = 145/521 (27%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-----KQK 832
            G   +RLE +GD  LK+  ++ L      + EG L+  + K VSN  L +        Q 
Sbjct: 972  GNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSNGYLARATLAAGLDQY 1031

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            +F +     K+ PR            Y+   L E+          +LP  +E S      
Sbjct: 1032 IFHKRFTGAKWRPR------------YISQVLAES----------TLPEKQEKS------ 1063

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALLF 951
                                             K IAD +E+LIGA Y+I   P+     
Sbjct: 1064 --------------------------------SKLIADVIESLIGASYIIGGFPKAFACV 1091

Query: 952  MSWLGLKVIPPVTNPE------SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
             + L L+   P++  +      + H   V+  G    E+ + Y+F +K+ LL+A+TH + 
Sbjct: 1092 QTLLPLERWTPLSEAKDILYDAAPHQDTVMSLGL--VEKLLGYKFTNKALLLEALTHVT- 1148

Query: 1006 FLNTLTDC-YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
            F    T+C Y+R EFLGDA+LDY+++R L+  +   S   +  +R+A+VN       A  
Sbjct: 1149 FRGLNTNCSYERHEFLGDAVLDYIVSRRLFAHKPELSHRKMHGIRTAMVN-------ASF 1201

Query: 1065 LGFHHFFKHLSPGL-----------HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDI 1113
            L +  F   ++  L           H  + +F++  +     L     +   +  EA +I
Sbjct: 1202 LAYSMFETTVTDELTNKDTLEPEVHHRALWQFLRSTSN---ALVASRIVATQQHAEAREI 1258

Query: 1114 -------------------EVPKALGDLFESVAGAIYLDSGMSLDT---------VWKVY 1145
                               + PK L D+ ESV GA+Y+DS  S+           +    
Sbjct: 1259 IATGLKHDSRFPWHALSLTDPPKYLSDIVESVIGALYIDSHGSIAICEEFVRRLGIISCL 1318

Query: 1146 YEIMKSEI------ERLSV-SVPKSP--IRELLELEPENARFSK-PEKLADGRRVRVTVE 1195
              I++  +      ERL + +V KS    R    L+ E AR S  PEK       +V V+
Sbjct: 1319 ERILRDGVDCLHPKERLGILAVDKSVKYARVTSNLKSEGARDSGVPEK-----GYKVQVK 1373

Query: 1196 VFGK---GSYKGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
            + GK   G  +G+ R    A+  AA  A+  L+     DVK
Sbjct: 1374 IGGKDVGGVVEGVKR--LQAETIAAWKAIGVLEGRDTEDVK 1412



 Score = 47.8 bits (112), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 41/140 (29%), Positives = 62/140 (44%), Gaps = 16/140 (11%)

Query: 996  LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            L+ A+T ++  LN   D YQRLEFLGD IL ++ + HL         G LT  +  LV+N
Sbjct: 960  LVTALTSSA--LNEGND-YQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSN 1016

Query: 1056 IIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV 1115
               A   +  G   +  H         +RF   +    +       L E    E ++ + 
Sbjct: 1017 GYLARATLAAGLDQYIFH---------KRFTGAKWRPRYI---SQVLAESTLPEKQE-KS 1063

Query: 1116 PKALGDLFESVAGAIYLDSG 1135
             K + D+ ES+ GA Y+  G
Sbjct: 1064 SKLIADVIESLIGASYIIGG 1083


>gi|452979125|gb|EME78888.1| hypothetical protein MYCFIDRAFT_43585 [Pseudocercospora fijiensis
            CIRAD86]
          Length = 1516

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 156/403 (38%), Gaps = 75/403 (18%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            + +   G + +RLE IGD+FLK A TI  +   PN +E +    R   + N NL++   Q
Sbjct: 1030 NFQRGMGENYERLEFIGDTFLKTATTISTFIMNPNENEFEFHVRRMLMLCNKNLYQTALQ 1089

Query: 832  KVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVL 891
                E + +  F  R  W P G    K L    +  G    +++           P +V 
Sbjct: 1090 LKLYEYIRSLAFN-RRYWYPEGL---KLLVGTGVVKGQEKEMYH----------EPREV- 1134

Query: 892  EIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALL 950
                                           + +K+IAD  EALIGA YL    P  A  
Sbjct: 1135 ------------------------------GLGEKTIADVCEALIGAAYLSHDKPGEAWE 1164

Query: 951  FMSWL-GLKVIPPVTNPESKHLS--DVLLDGFDK------------------FEESINYR 989
               W   ++ +  +   +   +      +D +DK                   E+   Y 
Sbjct: 1165 PEHWRDAVRAVTKLVKSDDHKMQTWQDYIDAYDKPAYQTGESTAVQKDLALRVEKEHAYT 1224

Query: 990  FKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDL 1048
            F     L  A  H S  ++      YQRLEFLGDA+LD     +L+       P  LT+ 
Sbjct: 1225 FTYPRLLYSAFMHPSVPYMYEKVPSYQRLEFLGDALLDMASITYLFYKYPDKDPQWLTEH 1284

Query: 1049 RSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD 1108
            + A+V+N    +L V +GFH   +H    L   ++ +          L  +    +G  D
Sbjct: 1285 KMAMVSNKFLGALCVDIGFHKHLRHHHATLEHQVRDYATE------LLEAKRIAGKGCVD 1338

Query: 1109 EAEDI-EVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
                + + PK L D+ E+  GA+++DS    + V + + E +K
Sbjct: 1339 YWTTVSDPPKCLPDIVEAYIGAMFIDSNFDYNQVQRFFEEHVK 1381



 Score = 53.5 bits (127), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 96/475 (20%), Positives = 178/475 (37%), Gaps = 87/475 (18%)

Query: 3    NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
            NA+ I+  + + +P+D      P   +S   +     F C + LP NSPL RS+ G    
Sbjct: 596  NALNILATFVSAIPTDGHEMQHPTYVVSSRGQK----FVCEVVLPGNSPL-RSMIGKVHQ 650

Query: 63   TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
             K LA R AA EA   L +   ++ +LMPV +  +    N    V          D  K 
Sbjct: 651  KKTLAKRSAAFEAVIELRKKSWINENLMPVYQRKLPAMRNALLAV----------DMKKT 700

Query: 123  RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
             Q+  +     +   R ++    ++  +        P++ +    ++H P      +A L
Sbjct: 701  NQYAMRIKPKIWAEQRGTLPVQLWITVID------FPEKLD----RVHQP------IAFL 744

Query: 183  TTKYIPKVCSFPIFTRCGEV-EVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
            T   +P+  SFPI+   G    V    +   +++ +E L     F   +F  V     + 
Sbjct: 745  TRTQMPQFPSFPIYLNDGRATTVKSADLGAPLLVDQERLKKLTAFTFRVFRDV-----FS 799

Query: 242  MLFDPNCSENSYFIVPT--------VSDSEQI----VIDWKFMTLISEHHNDVIQDIPEK 289
              ++ + ++ SY++ P          S +  I     IDW+ +  + +  ND  +  P  
Sbjct: 800  KTYEEDAAKLSYWLAPATLLLSTDQASSAHNIDPMTAIDWRLLEDVLD--NDEYKWTPST 857

Query: 290  ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYS 349
              + FV       D  ++  +    +   FY   + +++H     P   +  +       
Sbjct: 858  PHDRFV-------DKFIVDMFDGSRK---FYSIGVDSSLHQDDPIPEHASKGKGNRGGSI 907

Query: 350  LKYGL---------QIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
            + Y +         ++ +  QP+++ D    R N L P    +K +   T          
Sbjct: 908  MNYSVSLWKKSRQARVWSQNQPVVEADIVLQRRNMLAP--PEQKELAPVT---------- 955

Query: 401  ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIG 455
                 K  +VPE   I     ++       P+I +R  + L++ E   AV    G
Sbjct: 956  -----KAYIVPEPLRISAITPNVAASCFVWPAIAHRFESCLISIEGCEAVGVTCG 1005


>gi|225563402|gb|EEH11681.1| dicer-like protein [Ajellomyces capsulatus G186AR]
          Length = 1436

 Score = 85.1 bits (209), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 72/259 (27%), Positives = 117/259 (45%), Gaps = 37/259 (14%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            V Q  +  K++AD VEAL+ A  ++ G R A       L  + W+ L+  +  + +   +
Sbjct: 1028 VPQREMSTKTLADVVEALLAAATLDGGQRKAEKCLEIFLPELQWMPLEDRVNALYSSVPE 1087

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               + L   F + E  + Y F  K +L+QA TH S    + T  YQRLEF+GDAILD++I
Sbjct: 1088 AYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPSN-PGSKTSSYQRLEFVGDAILDHII 1146

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP----------GLH 1079
              HL+   R      +  +R+AL N    A L + +        ++             H
Sbjct: 1147 VYHLFNAPRTFPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTTLTTH 1206

Query: 1080 EV-IQRFVKMQAENDFTLNQ-----EYYLMEGECDEAED------------IEVPKALGD 1121
            +V + ++++     + T  Q     +Y  ++ +  EA +            +   K   D
Sbjct: 1207 KVSLWQYMRHGTSWELTAAQQQTANQYETLQADISEALEGSHTYPWTLLSRLHAQKFFSD 1266

Query: 1122 LFESVAGAIYLDSGMSLDT 1140
            L ESV GAI++DS  SLD 
Sbjct: 1267 LIESVLGAIFIDSHGSLDA 1285


>gi|371496114|gb|AEX31636.1| Dicer 2 [Aedes albopictus]
          Length = 821

 Score = 84.7 bits (208), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 72/271 (26%), Positives = 118/271 (43%), Gaps = 33/271 (12%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +A+ ++NRYC  +P D FT         ++K    ++    + LP+ S ++  + G+ M 
Sbjct: 566 SAVQLLNRYCMGMPRDAFTNTNVTWERVDLKNGQIVV---EVMLPLQSTVREKILGNPMR 622

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVT-------------KEFINLYENTEPVVPK 109
              LA R AA  ACR LYE KEL   L+P+              + + +  E++  +   
Sbjct: 623 NIKLAKRSAAFNACRKLYENKELSEHLIPIDCRNQLNNLKDVYFRHWADFDEDSGKLAGT 682

Query: 110 TPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKI 169
              I T+         Y K+   CF    P    PCY+Y +++       D  N+     
Sbjct: 683 QKCIRTHAIE------YPKQTTGCF----PEPGKPCYIYVLRIGAGFE-QDPSNENVNIF 731

Query: 170 HPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL----SEENLSNTLI 225
           H   NS     I+TTK +P +     F   G + V   L++  +VL    SE  L+    
Sbjct: 732 HSLYNSENNFGIMTTKPLPVLAKMKFFVTLGLINV--HLVETPIVLPNAGSEVELALLRQ 789

Query: 226 FMDYLFTKVLKLKKYLMLFDPNCSENSYFIV 256
           F   +F  VL+L K  +++D +   NS+ +V
Sbjct: 790 FHITVFRDVLRLWKDFLVYDYDNGINSFMVV 820


>gi|350631467|gb|EHA19838.1| hypothetical protein ASPNIDRAFT_119009 [Aspergillus niger ATCC 1015]
          Length = 1232

 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 107/400 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + L  IGD+F+KY   + L+  +   HEG LS L+ + +S+  L     Q   G+ +I+ 
Sbjct: 861  RSLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISK 920

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                +  W+PP           L+    PAS                             
Sbjct: 921  HLNGK-RWVPP-----------LVSGIEPAS----------------------------- 939

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA-----LLF---MS 953
                          N   Q SI   ++AD  +A++GA   + G   A     ++F    S
Sbjct: 940  --------------NEARQRSIGAATLADMTKAVVGAAFTDGGLNQAAACASVMFPKLKS 985

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W    +       T PE+   S  ++D     EE + Y F DKS  +++MTH S      
Sbjct: 986  WNASSLHDGTYSKTRPENAVASTAIVD----MEELLGYTFTDKSLAVESMTHPSCTGLVQ 1041

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH- 1069
            T  Y+RL FLG ++L++++  +L+   +  +P  +  L+SA  NN     +A+   FH  
Sbjct: 1042 TTSYRRLSFLGASVLEWIVVSYLHRHAQVMNPQRMQSLKSAFTNNTFLTFIAI--TFHQV 1099

Query: 1070 ---------------------------FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
                                       F +  S  L   +  FV+  +E    +  E + 
Sbjct: 1100 REQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSDALSTELSDFVQKSSEKADAIKHELWE 1159

Query: 1103 ME----GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                         D+ V   L D+ +S+ GA+++DS  +L
Sbjct: 1160 QRFYPWVRLRALGDMRV---LSDIIQSIFGAVFIDSQATL 1196


>gi|256544903|ref|ZP_05472274.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
 gi|256399402|gb|EEU13008.1| ribonuclease III [Anaerococcus vaginalis ATCC 51170]
          Length = 238

 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 39/191 (20%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD----CYQRLEFLGDAILD 1026
            LS   L+  +K EESI Y FK+K+ +  A+TH+SY +N   D      +RLEFLGD+ILD
Sbjct: 3    LSKERLEEIEKLEESIGYTFKNKNLIDVALTHSSY-INESKDENKSSNERLEFLGDSILD 61

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
             +++  LY++ + +  G LT +RS +V    F+                           
Sbjct: 62   LIVSEELYKNHKTYPEGKLTKIRSRIVCTSSFS--------------------------- 94

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKAL-GDLFESVAGAIYLDSGMSL--DTVWK 1143
              +A   F L+   YL+ G+ +E+ +    K++  D FE+   AIYLD+G     D + K
Sbjct: 95   --KASEKFNLSS--YLLFGKGEESHNGREKKSVKADTFEAFCAAIYLDAGYDFLKDFLMK 150

Query: 1144 VYYEIMKSEIE 1154
             YYEI+K  +E
Sbjct: 151  NYYEIVKELLE 161


>gi|400595165|gb|EJP62972.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
          Length = 1465

 Score = 84.3 bits (207), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 99/410 (24%), Positives = 155/410 (37%), Gaps = 97/410 (23%)

Query: 774  ENHTGP-SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
            + H G  + +RLE +GDSFLK A TI LY       E +    R   + N NLF      
Sbjct: 1011 QQHGGQRNYERLEFLGDSFLKMATTIALYTRNSEATEFEHHVERMLLLCNKNLFNTALDL 1070

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
                 + + +F+ R  W P                          +LP ++  S +    
Sbjct: 1071 GLQSYIRSDRFD-RRTWYP--------------------------NLPLVRGKSAKAT-- 1101

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFM 952
            +++Q                          + DK+IAD  EA+IGA  +    +G  +  
Sbjct: 1102 VVQQ--------------------------LGDKTIADVCEAIIGAAYMSGVQQGGNMDE 1135

Query: 953  SWLGLKVIPPVTNPESK-----------------HLSD---VLLDGFDKFEESINYRFKD 992
            +   +K +  + N ++                  HLS     +    D+    I YRF+ 
Sbjct: 1136 A---VKAVTKMVNNDNHKMTSFSDYYAAFSVPAWHLSPGSVSVRATVDRVAAIIGYRFRS 1192

Query: 993  KSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052
               L  A THASY    +   YQ LEFLGDA+LD +I  HL+       P  LT+ + ++
Sbjct: 1193 PLLLRSAFTHASYKAEEIPS-YQTLEFLGDALLDMVIVDHLFRTRPHAGPQALTESKMSV 1251

Query: 1053 VNNIIFASLAVRLGFHHFF---KHLSPGLHEVIQRFVKMQAEN------DFTLNQEYYLM 1103
             +N     L V LG H          PG  +  +  V    E           N+ Y+ +
Sbjct: 1252 CSNQFLGCLCVELGLHRELLTADAAVPGHVKAFEEKVAYLREQAAGTGASAATNKAYWTL 1311

Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                        PKAL D+ E++ GA+++D+   L  V   +   ++  I
Sbjct: 1312 A--------TRPPKALADVVEALIGAMFVDARYDLSVVANFFQRFVQPHI 1353



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 97/425 (22%), Positives = 170/425 (40%), Gaps = 81/425 (19%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           FTC + LP ++P   S TG    +K+ A   AA EAC  L E+  ++ +L P  K+ +  
Sbjct: 612 FTCWVILPDSAPFN-STTGILERSKVRARCAAAYEACTRLIEMGSINKNLQPTFKKNLPR 670

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N    +           S+K+++ Y   +        P+   P  L+   +++   +P
Sbjct: 671 MRNARLAL-----------SSKKQKVYTMLVKPKMWTSLPA-GIPAVLFQTFVQV---LP 715

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV-LSEE 218
           D        + P       +A+LT + +P +    +F    +V +S +LI    V +S E
Sbjct: 716 DSA-----AVTP-------IALLTREELPDIGPIKLFV-SADVIMSAKLIPGGAVQVSPE 762

Query: 219 NLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVP---TVSDSEQIVIDWKFM--T 273
            +     F   LF  V   K     F+    E  ++  P    + + E+  IDW+ +   
Sbjct: 763 QVQKLAAFTLCLFDDVFSKK-----FEAKDEEIPFYFAPASMALYEDEKGAIDWQELEHV 817

Query: 274 LISEHHNDVIQDIPEKERENFVFD-ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
           ++S H + V+ D     R  FV D  S  R  ++     ++ E      A   T+  P  
Sbjct: 818 VLSMHQSPVV-DPGNIARHYFVVDPHSGARKFII-----HEIEH-----ALRATDQTPAG 866

Query: 333 MFPSRTNTYQTFEEYYSLKYGLQIQ---------NLEQPLLDVDHTSCRLNFLTPRYVNR 383
           +   + + YQT +    ++Y    +         + EQP+      S R NFL       
Sbjct: 867 VPEHKNSGYQTSDRSI-MQYSCSTRRAQRSSIVFDTEQPVYKAWLLSLRRNFLDD----- 920

Query: 384 KGINLATTSEETRREIRESLGKKQLLVPELCL-IHPFPASLWRKSVSLPSILYRLNALLL 442
                         ++    G ++  +   CL +   PA + R ++ LPSIL+RL+  L+
Sbjct: 921 -------------DDMETVKGDQRCYITLQCLKVSAIPADVARAALLLPSILHRLDTALI 967

Query: 443 ADEIR 447
             E R
Sbjct: 968 VTEAR 972


>gi|158706450|sp|A2QX45.2|DCL22_ASPNC RecName: Full=Dicer-like protein 2-2; Includes: RecName:
            Full=Endoribonuclease dcl2-2; Includes: RecName:
            Full=ATP-dependent helicase dcl2-2
          Length = 1362

 Score = 84.0 bits (206), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 107/400 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + L  IGD+F+KY   + L+  +   HEG LS L+ + +S+  L     Q   G+ +I+ 
Sbjct: 926  RLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISK 985

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                +  W+PP           L+    PAS                             
Sbjct: 986  HLNGK-RWVPP-----------LVSGIEPAS----------------------------- 1004

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA-----LLF---MS 953
                          N   Q SI   ++AD  +A++GA   + G   A     ++F    S
Sbjct: 1005 --------------NEARQRSIGAATLADMTKAVVGAAFTDGGLNQAAACASVMFPKLKS 1050

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W    +       T PE+   S  ++D     EE + Y F DKS  +++MTH S      
Sbjct: 1051 WNASSLHDGTYSKTRPENAVASTAIVD----MEELLGYTFTDKSLAVESMTHPSCTGLVQ 1106

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH- 1069
            T  Y+RL FLG ++L++++  +L+   +  +P  +  L+SA  NN     +A+   FH  
Sbjct: 1107 TTSYRRLSFLGASVLEWIVVSYLHRHAQVMNPQRMQSLKSAFTNNTFLTFIAI--TFHQV 1164

Query: 1070 ---------------------------FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
                                       F +  S  L   +  FV+  +E    +  E + 
Sbjct: 1165 REQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSDALSTELSDFVQKSSEKADAIKHELWE 1224

Query: 1103 ME----GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                         D+ V   L D+ +S+ GA+++DS  +L
Sbjct: 1225 QRFYPWVRLRALGDMRV---LSDIIQSIFGAVFIDSQATL 1261


>gi|171689324|ref|XP_001909602.1| hypothetical protein [Podospora anserina S mat+]
 gi|170944624|emb|CAP70735.1| unnamed protein product [Podospora anserina S mat+]
          Length = 1406

 Score = 84.0 bits (206), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 111/420 (26%), Positives = 154/420 (36%), Gaps = 129/420 (30%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R+E +GDS LK+  TI   C+     +  LS  + K VSNY L K          +I T
Sbjct: 930  ERIEFLGDSILKFCTTI--NCSA----QCFLSASKDKIVSNYRLCKAAIDFGLARYIINT 983

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             +   D W P   FV  YLE        P+S       P  +E+S               
Sbjct: 984  AYTT-DKWRP--VFVEDYLE----RTDNPSS-----DGPKTREMS--------------- 1016

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                    K++AD VEALIGA  I  G   AL  +S      +P
Sbjct: 1017 -----------------------TKTLADVVEALIGASHISGGINKALACISLF----LP 1049

Query: 962  PVTNPESKHLSDVLLD----------GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
                    H   VL D               E+ I Y FK KS L++AMTH S+ +    
Sbjct: 1050 EAKWQSIDHGRQVLYDEAPDDEPLPPNMHLLEKLIGYTFKKKSLLIEAMTHPSFNVQDTR 1109

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD-----LRSALVNNIIFA------- 1059
                RLEFLGDAILDYL+   L+      +   L +     LR+ALVN  I         
Sbjct: 1110 ASLDRLEFLGDAILDYLVVESLFSLREPLTGLPLENSKLHLLRTALVNADILGFLVMEWA 1169

Query: 1060 ----------------------------------------SLAVRLGFHHFFKHLSPGLH 1079
                                                    S   +     F ++ SP + 
Sbjct: 1170 IEEERYNAEVILPDPTSNPYLSPSRRTSSSSTTPPEINLISTTAKFPLWSFLRYTSPEMG 1229

Query: 1080 EVIQRFVKMQAENDFTLNQ-EYYLMEGE---CDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
            E I   +  Q+ + F  ++  + L  GE         ++  K  GD+FES+ GA+++DSG
Sbjct: 1230 EHI---LSTQSRHSFLRDEIRHALDRGEKYPWPALTRLQAQKFYGDVFESLMGAVWVDSG 1286


>gi|134079420|emb|CAK40801.1| unnamed protein product [Aspergillus niger]
          Length = 1379

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 107/400 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + L  IGD+F+KY   + L+  +   HEG LS L+ + +S+  L     Q   G+ +I+ 
Sbjct: 943  RLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISK 1002

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                +  W+PP           L+    PAS                             
Sbjct: 1003 HLNGK-RWVPP-----------LVSGIEPAS----------------------------- 1021

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA-----LLF---MS 953
                          N   Q SI   ++AD  +A++GA   + G   A     ++F    S
Sbjct: 1022 --------------NEARQRSIGAATLADMTKAVVGAAFTDGGLNQAAACASVMFPKLKS 1067

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W    +       T PE+   S  ++D     EE + Y F DKS  +++MTH S      
Sbjct: 1068 WNASSLHDGTYSKTRPENAVASTAIVD----MEELLGYTFTDKSLAVESMTHPSCTGLVQ 1123

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH- 1069
            T  Y+RL FLG ++L++++  +L+   +  +P  +  L+SA  NN     +A+   FH  
Sbjct: 1124 TTSYRRLSFLGASVLEWIVVSYLHRHAQVMNPQRMQSLKSAFTNNTFLTFIAI--TFHQV 1181

Query: 1070 ---------------------------FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
                                       F +  S  L   +  FV+  +E    +  E + 
Sbjct: 1182 REQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSDALSTELSDFVQKSSEKADAIKHELWE 1241

Query: 1103 ME----GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                         D+ V   L D+ +S+ GA+++DS  +L
Sbjct: 1242 QRFYPWVRLRALGDMRV---LSDIIQSIFGAVFIDSQATL 1278


>gi|169768544|ref|XP_001818742.1| ATP-dependent helicase dcl2 [Aspergillus oryzae RIB40]
 gi|121804870|sp|Q2UNX5.1|DCL2_ASPOR RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|83766600|dbj|BAE56740.1| unnamed protein product [Aspergillus oryzae RIB40]
 gi|391868391|gb|EIT77606.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1377

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 108/449 (24%), Positives = 177/449 (39%), Gaps = 109/449 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GDS LKY ++  L+    N  EG L+  R+  V N                   
Sbjct: 947  QRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQN------------------- 987

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
               PR             L  A ++AG  + +         K L+P + +  +    V  
Sbjct: 988  ---PR-------------LTRAALDAGLDSFIIT-------KALTPRRWIAPLISTRV-- 1022

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLG- 956
                        P     +  +  K +AD +EALIGA  ++ G   A +    F+  +  
Sbjct: 1023 ---------GAAP----VKRQMSAKVLADVIEALIGAAYLDGGHSKAQICTHCFLPEVNR 1069

Query: 957  --LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY 1014
              L +   +T  E    +  ++DG    +  + Y FK++  L++A+TH S   +  T  Y
Sbjct: 1070 QPLDIPSLITQTEHGRTARHIIDG--DLQRHLGYTFKNEDLLIEALTHPSCQHDQTTQSY 1127

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH----- 1069
            QRLEFLGDAILD +I   +++     SPG +T ++ A+VN  +     +           
Sbjct: 1128 QRLEFLGDAILDMVIVPIIFQYSNKISPGDMTLIKHAVVNANLLGFFCMEFSIEQDKTKV 1187

Query: 1070 ------FFKHLSPGLHEVIQRFVK-----MQAENDFTLNQE-----------YYLMEGEC 1107
                   F   S   H  + RF++     +Q   D  L++            Y+      
Sbjct: 1188 EKTPDGRFAVKSETQHVELWRFMRFNSLDLQTSRDAALDRHRRLRNKILTSLYHGPSYPW 1247

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-MKSEIER-----LSVSVP 1161
                 +   K   D+ ESV GAIY+DSG  L    +   +I + S + R     ++V+ P
Sbjct: 1248 QSLSQLYADKFFSDIVESVLGAIYVDSGGDLSACERFLEQIGLLSYVRRVLLDGINVTHP 1307

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRV 1190
            ++  +          R SK + L + RRV
Sbjct: 1308 RNIAQ----------RLSKGDALFNLRRV 1326



 Score = 47.0 bits (110), Expect = 0.076,   Method: Compositional matrix adjust.
 Identities = 37/126 (29%), Positives = 53/126 (42%), Gaps = 19/126 (15%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF-- 1071
            YQR EFLGD+IL Y+++  L+        G LT+ R+ +V N      A+  G   F   
Sbjct: 946  YQRYEFLGDSILKYIVSCQLFFQNLNWPEGFLTEGRTTIVQNPRLTRAALDAGLDSFIIT 1005

Query: 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
            K L+P      +R++                M             K L D+ E++ GA Y
Sbjct: 1006 KALTP------RRWIAPLISTRVGAAPVKRQMSA-----------KVLADVIEALIGAAY 1048

Query: 1132 LDSGMS 1137
            LD G S
Sbjct: 1049 LDGGHS 1054


>gi|407917735|gb|EKG11039.1| Ribonuclease III [Macrophomina phaseolina MS6]
          Length = 1216

 Score = 83.6 bits (205), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/303 (28%), Positives = 126/303 (41%), Gaps = 83/303 (27%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD  LK+   + L     +  E  L+  + + VSN +L K  ++      +I  
Sbjct: 683  QRLEFLGDCILKFNTAVQLMAGNLHWPESYLTEKKDRVVSNGSLAKASRRAGLDRFIITR 742

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P   +V   L  A IE            LP  ++LS               
Sbjct: 743  AFTGA-KWRP--RYVNDVLALAAIE------------LPEKRDLS--------------- 772

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG-PRGALLFMSWLGLKVI 960
                                    K++AD VE+LIGA  IE G P+  L   + L     
Sbjct: 773  -----------------------SKTLADVVESLIGAAYIEGGMPKANLCIATLLPKLSW 809

Query: 961  PPVTNPE---SKHLSDVLLDG----FDKFEESINYRFKDKSYLLQAMTHASY--FLNTLT 1011
             P+       +KH ++  +       ++ EE I Y FK+K  LL+A+TH S+  + +  T
Sbjct: 810  CPLDESRHILAKHAAEDHISAPPIHLERAEELIGYTFKNKYLLLEALTHPSFTSYRDATT 869

Query: 1012 DCYQRLEFLGDAILDYLITRHLYEDE---------------RAHSP-----GTLTDLRSA 1051
              YQRLEFLGDA+LDYLI+R L+                  R ++P     G++   R+A
Sbjct: 870  SSYQRLEFLGDAVLDYLISRRLHAYRKPLSADSTSQKNPPPRGYAPDELPHGSMHATRAA 929

Query: 1052 LVN 1054
            LVN
Sbjct: 930  LVN 932



 Score = 47.4 bits (111), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 43/147 (29%), Positives = 63/147 (42%), Gaps = 15/147 (10%)

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            F++   +L+A+T +S    T  + YQRLEFLGD IL +     L           LT+ +
Sbjct: 662  FENYEMVLRAITASS----TNENDYQRLEFLGDCILKFNTAVQLMAGNLHWPESYLTEKK 717

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE 1109
              +V+N   A  + R G   F          +I R           +N    L   E  E
Sbjct: 718  DRVVSNGSLAKASRRAGLDRF----------IITRAFTGAKWRPRYVNDVLALAAIELPE 767

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSGM 1136
              D+   K L D+ ES+ GA Y++ GM
Sbjct: 768  KRDLS-SKTLADVVESLIGAAYIEGGM 793


>gi|37223480|gb|AAQ90278.1| dicer [Danio rerio]
          Length = 53

 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 36/53 (67%), Positives = 47/53 (88%)

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPEN 1175
            FES+AGAIY+DSGMSL+TVW+VYY +M+  IE+ S +VP+SP+RELLE+EPE 
Sbjct: 1    FESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPET 53


>gi|326485005|gb|EGE09015.1| dicer-like protein 2 [Trichophyton equinum CBS 127.97]
          Length = 1417

 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 95/398 (23%), Positives = 149/398 (37%), Gaps = 101/398 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K        + ++ T
Sbjct: 982  QRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILTT 1041

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P                     L+N     N  ++  +   E+        
Sbjct: 1042 CFTGA-KWRP---------------------LYNSTYADNAGKIGEKSTREL-------- 1071

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                    K++AD VE+LIGA +I+ G    L  +       +P
Sbjct: 1072 ----------------------STKTLADVVESLIGAAIIDGGENKVLRCLELF----LP 1105

Query: 962  PVTNPESKHLSDVLLDG------------FDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             +    S    ++L D               K E  I+Y F  K+ L  +++H S  ++ 
Sbjct: 1106 EINWQPSGERIEILFDSAPDFNDDCPRDIMSKIEPLIDYSFTKKALLATSLSHPSNLISR 1165

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------ 1063
            +T  YQRLEFLGD+ILD ++TR L+  ++      +  +R+ALVN    A L +      
Sbjct: 1166 MT--YQRLEFLGDSILDNIVTRALFRCKKEIPHQDMHLIRTALVNADFLAFLCMNTSTDV 1223

Query: 1064 --------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
                                ++    +  H S  + E  Q   +   E       E  L 
Sbjct: 1224 TREDVCVSPTGEVEVTSSTHQVSLWQYMSHSSTDIVETQQAIARTFEE--LRDQIEKALR 1281

Query: 1104 EGEC---DEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
             G          +  PK   D+ ES+ GAI++DS  S+
Sbjct: 1282 SGASYPWTLLSTLNAPKFFSDIIESILGAIFIDSRGSI 1319


>gi|358396694|gb|EHK46075.1| hypothetical protein TRIATDRAFT_292263 [Trichoderma atroviride IMI
            206040]
          Length = 1456

 Score = 83.6 bits (205), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 92/368 (25%), Positives = 150/368 (40%), Gaps = 58/368 (15%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSD------ 973
            +H +  KSIAD  EALIGA  +  G     + M+   +  +    N    + SD      
Sbjct: 1071 RHCLSHKSIADVCEALIGAAYL-TGKSNNSMDMAVKAVTAMVSSENHTMINFSDYRARYT 1129

Query: 974  -----------VLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLG 1021
                          +  ++  E I YRF+    L  A  H+SY +   +   YQ+LEFLG
Sbjct: 1130 TPEWHTYEPNAAQRNMVERIAEIIGYRFQCAPLLRSAFKHSSYVYEEKIRRDYQQLEFLG 1189

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            DA++D ++   LY       P  LT+ + A+V+N     L V+LG        +  LH +
Sbjct: 1190 DALIDMVVVDFLYTRFPEADPKWLTEHKMAMVSNQFLGFLCVKLGLSKHLMLATSSLHSL 1249

Query: 1082 IQRFV-------------------KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDL 1122
            I+ +                    K  A +D   + E   +  +   AE  + PKAL D+
Sbjct: 1250 IREYTAEAKEAEEKAKGCRKPHGNKAAAGSDKGASAEAPSVTLDF-WAEIQQPPKALADV 1308

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV---SVPKSPIRELLELEPENARFS 1179
             E++ GA+++DSG S   V   + + ++   E +S+        P+  L+    E+ R +
Sbjct: 1309 VEALVGAMFVDSGYSFSVVQDFFAKFIQPYFEDMSLLSSFASNHPVTVLIHALQEDYRCT 1368

Query: 1180 K---------PEKLADGRRVRVTVEVFGKGSYKG-------IGRNYCIAKCTAAKCALKH 1223
            +         P     G  +    E+       G         ++   AK T AK ALK 
Sbjct: 1369 QWKLHMASVPPSTDDAGVAILAESELLCALMIHGNVIAHATSTKSGVTAKLTVAKLALKK 1428

Query: 1224 LKSAKPAD 1231
            L+S + A+
Sbjct: 1429 LESIQDAN 1436



 Score = 65.9 bits (159), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 105/484 (21%), Positives = 192/484 (39%), Gaps = 91/484 (18%)

Query: 3   NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
           +++  + +Y + L  D   ++  ++      + D   F  S+ LP  SP+K ++ G    
Sbjct: 547 DSLACLAKYTSSLSRDGLQKIEYVV------KSDKKQFIASVVLPDGSPIK-TIQGISQR 599

Query: 63  TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKR 122
           TK LA   AA EACR+L E   +D  L P   + + +  N    +           S  +
Sbjct: 600 TKQLARCSAAFEACRILIEKGYIDKHLRPAFAKKLPVIRNARLAL-----------SADK 648

Query: 123 RQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAIL 182
              Y   +   F +       P  LY   + L+     +Q   G    P       L +L
Sbjct: 649 MSEYEMLVKPRFWSLCLGPEIPTALYQTTISLS-----QQAALGYPSRP-------LILL 696

Query: 183 TTKYIPKVCSFPIFTRCGEVE-VSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYL 241
           T   +P + S P+F   G+   V +     ++ ++ E +     F   LF  V   K+Y 
Sbjct: 697 TRNPLPDIPSAPLFFDSGQTSTVRLSHSKPSLEVTAEEIRALSRFTLRLFAHVFS-KQY- 754

Query: 242 MLFDPNCSENSYFIVP-TVSDSEQIV----IDWKFMTLISEHHNDVIQDIPEKERENFVF 296
              +    E  YFI P +VS S+ I     IDW           +V++ +   ER  +  
Sbjct: 755 ---EAEPRELPYFIAPCSVSGSQNIEDGSNIDW-----------EVVKHVAATERLEWSN 800

Query: 297 DESK-FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS-----RTNTYQTFEEY--- 347
              + F+D + +  +    +   F +A I   + P    P+     ++  Y+  E+    
Sbjct: 801 APKEFFKDKLAIDAWDGSRK---FILAGINEQLKPSDPTPAGVPQPKSQAYKKVEQNIKE 857

Query: 348 YSLKYGLQIQNL-----EQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRES 402
           YS    LQ +       EQP+++ +  S R NFL   ++  +  N               
Sbjct: 858 YSTSLSLQSRKRRNWSDEQPVVNAELLSIRRNFLDEYFIGDEADNTC------------- 904

Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRT----AVASEIGLGK 458
                 ++ E  ++ P P  +   ++ LP ++YR++++L+A E+ +    A+  E+ L  
Sbjct: 905 -----YVILEPLVVSPLPIDIVFMALLLPVVMYRIDSVLIASEVCSLVDLAIRPELALEA 959

Query: 459 VILD 462
           +  D
Sbjct: 960 ITKD 963


>gi|315051166|ref|XP_003174957.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
 gi|311340272|gb|EFQ99474.1| hypothetical protein MGYG_02485 [Arthroderma gypseum CBS 118893]
          Length = 1425

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 154/393 (39%), Gaps = 90/393 (22%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K          ++ T
Sbjct: 989  QRLEFLGDSALKLHASMQLLADHPIWHEGILSKKKDSIVSNSRLWKAAVDTGLDRFILTT 1048

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P                     L+N     N+     E+  E+        
Sbjct: 1049 CFTGA-KWRP---------------------LYNSTYRHNVGTARREQTREL-------- 1078

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW 954
                                    K++AD VE+LIGA +++ G    L    LF+   +W
Sbjct: 1079 ----------------------STKTLADVVESLIGAAIVDGGENKVLRCLELFLPEINW 1116

Query: 955  LGLKVIPPVTNPESKHLSDVL-LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L       +    +   SD    D   K E  I+Y F  ++ L  +++H S  ++ +T  
Sbjct: 1117 LPSGERVEILYDSAPDFSDDFPRDILSKIEPLIDYSFTKRALLAASLSHPSNLISGMT-- 1174

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF--- 1070
            YQRLEFLGD+ILD ++TR L+  ++      +  +R+ALVN    A L ++         
Sbjct: 1175 YQRLEFLGDSILDNVVTRALFRCDKEIPHQDMHLIRTALVNADFLAFLCMKTSTDERRED 1234

Query: 1071 --------FKHLSPGLHEVIQRFVKMQAENDFTLNQE-----YYLMEGECDEA------- 1110
                     K  S      + +++   A  D    Q+     +  +  E D+A       
Sbjct: 1235 VCASPTGNVKVTSSTRRVSLWQYMAHSASLDILETQQAMACTFEKLRDEIDDALRSGTRY 1294

Query: 1111 -----EDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                   +  PK   D+ ES+ GAI++DS  S+
Sbjct: 1295 PWTLLSTLNAPKFFSDIVESILGAIFIDSRGSI 1327



 Score = 45.1 bits (105), Expect = 0.29,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 60/146 (41%), Gaps = 13/146 (8%)

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD   +L A+T  S   NT    YQRLEFLGD+ L    +  L  D      G L+  +
Sbjct: 967  FKDIKLVLTAITATSARENT---NYQRLEFLGDSALKLHASMQLLADHPIWHEGILSKKK 1023

Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE 1109
             ++V+N      AV  G   F          +   F   +    +     + +     ++
Sbjct: 1024 DSIVSNSRLWKAAVDTGLDRFI---------LTTCFTGAKWRPLYNSTYRHNVGTARREQ 1074

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDSG 1135
              ++   K L D+ ES+ GA  +D G
Sbjct: 1075 TRELST-KTLADVVESLIGAAIVDGG 1099


>gi|317033008|ref|XP_001394728.2| hypothetical protein ANI_1_2258094 [Aspergillus niger CBS 513.88]
          Length = 889

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 152/400 (38%), Gaps = 107/400 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + L  IGD+F+KY   + L+  +   HEG LS L+ + +S+  L     Q   G+ +I+ 
Sbjct: 453  RLLAFIGDAFMKYLFAMQLFLHHHLWHEGLLSSLKQRNLSDAGLAHAIHQSGLGKFLISK 512

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                +  W+PP           L+    PAS                             
Sbjct: 513  HLNGK-RWVPP-----------LVSGIEPAS----------------------------- 531

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA-----LLF---MS 953
                          N   Q SI   ++AD  +A++GA   + G   A     ++F    S
Sbjct: 532  --------------NEARQRSIGAATLADMTKAVVGAAFTDGGLNQAAACASVMFPKLKS 577

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W    +       T PE+   S  ++D     EE + Y F DKS  +++MTH S      
Sbjct: 578  WNASSLHDGTYSKTRPENAVASTAIVD----MEELLGYTFTDKSLAVESMTHPSCTGLVQ 633

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH- 1069
            T  Y+RL FLG ++L++++  +L+   +  +P  +  L+SA  NN     +A+   FH  
Sbjct: 634  TTSYRRLSFLGASVLEWIVVSYLHRHAQVMNPQRMQSLKSAFTNNTFLTFIAI--TFHQV 691

Query: 1070 ---------------------------FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
                                       F +  S  L   +  FV+  +E    +  E + 
Sbjct: 692  REQNHIDVDDEHNVHKNVTTCSIRLWDFLRLHSDALSTELSDFVQKSSEKADAIKHELWE 751

Query: 1103 ME----GECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                         D+ V   L D+ +S+ GA+++DS  +L
Sbjct: 752  QRFYPWVRLRALGDMRV---LSDIIQSIFGAVFIDSQATL 788


>gi|240276002|gb|EER39515.1| dicer-like protein [Ajellomyces capsulatus H143]
          Length = 800

 Score = 83.2 bits (204), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 71/259 (27%), Positives = 115/259 (44%), Gaps = 37/259 (14%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            V Q  +  K++AD VEAL+ A  ++ G R A       L  + W+ L+  +  + +   +
Sbjct: 392  VPQREMSTKTLADVVEALLAAATLDGGQRKAEKCLEIFLPELQWMPLEDRVNALYSSVPE 451

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               + L   F + E  + Y F  K +L+QA TH S    + T  YQRLEF+GDAILD++I
Sbjct: 452  AYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPSN-PGSKTSSYQRLEFVGDAILDHII 510

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE--------- 1080
              HL+   R      +  +R+AL N    A L + +        ++    E         
Sbjct: 511  VYHLFNAPRILPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTR 570

Query: 1081 --VIQRFVKMQAENDFTLNQ-----EYYLMEGECDEAED------------IEVPKALGD 1121
               + ++++     + T  Q     +Y  ++ +  EA +            +   K   D
Sbjct: 571  KVSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSD 630

Query: 1122 LFESVAGAIYLDSGMSLDT 1140
            L ESV GAI++DS  SLD 
Sbjct: 631  LIESVLGAIFIDSHGSLDA 649


>gi|367035818|ref|XP_003667191.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
            42464]
 gi|347014464|gb|AEO61946.1| hypothetical protein MYCTH_2312762 [Myceliophthora thermophila ATCC
            42464]
          Length = 1475

 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 191/539 (35%), Gaps = 166/539 (30%)

Query: 778  GPSP-KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
            GP+  +R+E +GD+ LK+   +     YP   EG LS L+ K VSN  LF       FG 
Sbjct: 1013 GPTDYERVEFLGDAILKFCTAVNCSANYPIHPEGFLSRLKDKIVSNSRLFHAAVD--FG- 1069

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
                                   L+  +I   F    W    + +L E  P +       
Sbjct: 1070 -----------------------LDRYIIHKTFTMHKWRPAYVEDLLENPPSET------ 1100

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
                                      +  K++AD VEALIGA  I  G   AL  MS   
Sbjct: 1101 ----------------------ETRRLSTKTLADVVEALIGASYISGGTPKALACMSLF- 1137

Query: 957  LKVIPPVTNPESKHLSDVLLD----------GFDKFEESINYRFKDKSYLLQAMTHASYF 1006
               +P       +H  +VL +               E  + Y F  +S L++AMTH S  
Sbjct: 1138 ---LPEFEWHSIEHCREVLYNQAPDDEPLPATMRSLESLLGYTFTKRSLLVEAMTHPSCN 1194

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP---GTLTDLRSALVNNIIFASLAV 1063
               +     RLEFLGDAILDY++ + L+ D    +P    TL  LR+ LVN  I A LA+
Sbjct: 1195 GPNIRASLDRLEFLGDAILDYIVVKALF-DMSTPTPLENSTLHLLRTTLVNADILAFLAL 1253

Query: 1064 -----------------------------------------------RLGFHHFFKHLSP 1076
                                                           RL    F +H SP
Sbjct: 1254 EWAITQDGFDVVTTTTSTTTTTTLPSSSSGREDAGANTSVIVTARQTRLPLPSFLRHASP 1313

Query: 1077 GLHEVIQRFVKMQ--AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
             L  + QR   ++  A  +  L   +            ++  K   D+ ES+ GA+++DS
Sbjct: 1314 DLG-LAQRATALRHAAMREPILQALWRGPRYPWSLLSRLQAQKFHADVVESLLGAVWVDS 1372

Query: 1135 G--------------------MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPE 1174
            G                    +  D VW ++ +      E L V     P+R L++  PE
Sbjct: 1373 GDMRQCEAVAERIGILPLMRRLVADRVWLLHPK------EELGVLAGSRPVRYLVQQVPE 1426

Query: 1175 N---ARFSKPEKLADGRRVRVTVEVFGK--GSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228
                 R  + E   DG       EV G+  G++     +   A+  AA+ A   LK  K
Sbjct: 1427 GEEAERLFRCEVAVDG-------EVVGRAEGAF-----SQEEARTRAAEEACARLKEGK 1473


>gi|440804445|gb|ELR25322.1| ribonuclease III, putative [Acanthamoeba castellanii str. Neff]
          Length = 805

 Score = 83.2 bits (204), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 89/320 (27%), Positives = 124/320 (38%), Gaps = 62/320 (19%)

Query: 928  IADCVEALIGAYLIECGPRGALLFMS--------------WLGLKVIPPVTNPESKHLSD 973
            +AD  EALIGA  ++ G      F +              WL     P    P  +HL +
Sbjct: 519  LADSFEALIGALYLDQGLEACREFFAGCLFSESEADLRRMWLQPCAHPLQEGPSDRHLIE 578

Query: 974  V--LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD--------CYQRLEFLGDA 1023
               ++ G+ K EE     FK    L+QA TH+S     LTD          QRLEFLGDA
Sbjct: 579  ASPIMKGYTKLEEQTGIEFKHIRLLVQAFTHSS-----LTDDCDTLKLGTSQRLEFLGDA 633

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            +L Y++T  LY      + G LT  R ALVNN +   +   LGF  F ++L P   E   
Sbjct: 634  VLQYVVTACLYAHYPDQNEGQLTQYRVALVNNQVLGRIGKDLGFGPFIRYL-PSTKE--- 689

Query: 1084 RFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL--DTV 1141
                                 G  D          + D  E+  GA++L+ G+ +    V
Sbjct: 690  -------------------QTGVTD--------SMIADCVEAFIGALFLEKGLEVVEAFV 722

Query: 1142 WKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGS 1201
              V+   ++  +       PKS + +     P           A  R+  V V V G+  
Sbjct: 723  RVVFLPRLEDMLATRQYLDPKSRLSQRHRSAPPTYTLLSETGPAHMRKFVVGVTVRGRLK 782

Query: 1202 YKGIGRNYCIAKCTAAKCAL 1221
             KG G     A+  AA  AL
Sbjct: 783  GKGSGYTRVSAEQNAANDAL 802



 Score = 55.5 bits (132), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 51/197 (25%), Positives = 82/197 (41%), Gaps = 38/197 (19%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            QRLE+LGDA+L+++ + HL+     H  G L+  RS LVNN   A L  RL       HL
Sbjct: 443  QRLEYLGDAVLEFICSAHLFTQLPQHDEGPLSQYRSGLVNNRFLAYLTQRL-------HL 495

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                                   Q  Y    E  +         L D FE++ GA+YLD 
Sbjct: 496  D---------------------EQLCYADVAELTQGGKEGRRNMLADSFEALIGALYLDQ 534

Query: 1135 GMSL--DTVWKVYYEIMKSEIERLSVSVPKSPI------RELLELEPENARFSKPEKLA- 1185
            G+    +      +   ++++ R+ +     P+      R L+E  P    ++K E+   
Sbjct: 535  GLEACREFFAGCLFSESEADLRRMWLQPCAHPLQEGPSDRHLIEASPIMKGYTKLEEQTG 594

Query: 1186 -DGRRVRVTVEVFGKGS 1201
             + + +R+ V+ F   S
Sbjct: 595  IEFKHIRLLVQAFTHSS 611



 Score = 50.4 bits (119), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 35/54 (64%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFG 835
           +RLE +GD+ L+Y +T  LY  YP+ +EG+L+  R   V+N  L ++GK   FG
Sbjct: 625 QRLEFLGDAVLQYVVTACLYAHYPDQNEGQLTQYRVALVNNQVLGRIGKDLGFG 678


>gi|158706455|sp|Q2H0G2.2|DCL1_CHAGB RecName: Full=Dicer-like protein 1; Includes: RecName:
            Full=Endoribonuclease DCL1; Includes: RecName:
            Full=ATP-dependent helicase DCL1
          Length = 1607

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 152/402 (37%), Gaps = 91/402 (22%)

Query: 770  QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
            Q   ++  G + +RLE +GD FLK A TI ++   P+  E +    R   + N NLF   
Sbjct: 1099 QISFQSGMGNNYERLEFLGDCFLKMATTISIFTLIPDKAEFEYHVERMLLICNRNLFNNA 1158

Query: 830  KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEK 889
             +    E + +  F+ R +W         Y E   ++ G                     
Sbjct: 1159 LEVKLEEHIRSMAFD-RRSW---------YPEGLTLKKG--------------------- 1187

Query: 890  VLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL 949
                 K+K                  +L  QH + DK+IAD  EALIGA  +    +   
Sbjct: 1188 -----KRK------------------DLTRQHVLADKTIADVCEALIGAAYLTAQEQTPP 1224

Query: 950  LF-MSWLGLKVIPPVTNPESKHLSD-----------------VLLDGFDKFEESINYRFK 991
             F ++   + V+    N      SD                   LD   +FE  + Y F 
Sbjct: 1225 NFDLAIRAVTVMVKDKNHTMTSYSDYYAAYSPPAWQTAPCNSTQLDMAARFEARMGYAFT 1284

Query: 992  DKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050
                L  A  H +Y  +      YQRLEFLGDA+LD      L+       P  LT+ + 
Sbjct: 1285 HPRLLRSAFQHPTYPSVYEKLPSYQRLEFLGDALLDMASVEFLFHRFPGADPQWLTEHKM 1344

Query: 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV-----KMQAEND---FTLNQEYYL 1102
            A+V+N     LAV LGFH    + +  + + I  +V      +Q+  D    T    +  
Sbjct: 1345 AMVSNQFLGCLAVYLGFHRAISYCASAIQKEITEYVTEIEDALQSARDDASKTPCNRHAT 1404

Query: 1103 MEGECDE-----AEDIEV-----PKALGDLFESVAGAIYLDS 1134
                 D      A D  V     PK L D+ E+  GA+++DS
Sbjct: 1405 TPSPGDLPAESFARDFWVRCSRPPKCLPDVVEAYVGAVFVDS 1446



 Score = 57.0 bits (136), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 94/436 (21%), Positives = 169/436 (38%), Gaps = 95/436 (21%)

Query: 40   FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
            + C + LP +SP+ RS TG    +K +A   AA E C +L + K LD  L P   + +  
Sbjct: 697  YQCEVTLPESSPI-RSATGKVYASKAVAKCSAAYEMCLMLIKGKYLDQHLRPTFTKQLPA 755

Query: 100  YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
              N    V           S+K+++ Y  R+     +    +  P  L+A+ + L  P  
Sbjct: 756  MRNARLAV-----------SSKKKEQYKMRIKPELWSV---LGEPTELFAMALTLADPTA 801

Query: 160  DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF--------TRCGEVEVSIELIDK 211
              ++          +SP  L +LT + IP++ SFP++          C  V   +EL D 
Sbjct: 802  LARH----------SSP--LLLLTRQPIPQIASFPLYFGKNRSSAVHCVPVPGRVELDDN 849

Query: 212  NVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPT----------VSD 261
             +   +  ++ TL     +F+K          ++   ++  YF+ PT          V+D
Sbjct: 850  QI---QGLVAVTLAIFKDIFSKE---------YEATAAQLPYFLAPTLMQHGSDFTSVTD 897

Query: 262  SEQIVIDWKFMTLISEHHNDVIQDIPEKERENF-----VFDESKFRDAVVMPWYRNQFEP 316
              +IV DW  +T + +  N+ +    + E + F     V D         +   R+  +P
Sbjct: 898  LSRIV-DWGAVTFVRD--NERVAYALDDEADEFFKNKYVADPYDGSRKFFLRGRRHDMKP 954

Query: 317  TYFYVAEIMTNVHPRSMFPSRTNTYQTFE-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNF 375
            T      I+T  H       +T+    +    +S          +QP+++ +    R N 
Sbjct: 955  TDMVPEGIVTPGHRAWRVSCKTHDILNYSLSAWSKSRAFLTPREDQPVVEAEVLPIRRNL 1014

Query: 376  LTPRYVNRKGINLATTSEETRREIRESLGKKQL------LVPELCLIHPFPASLWRKSVS 429
            L                        + +G   L      +V E   I P P  L   + +
Sbjct: 1015 LD-----------------------DHIGDDDLEPKPCFIVLEPLRISPLPVDLVAMAYN 1051

Query: 430  LPSILYRLNALLLADE 445
             P+I++R+++ L+A E
Sbjct: 1052 FPAIMHRIDSNLVALE 1067


>gi|302661784|ref|XP_003022555.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
 gi|291186507|gb|EFE41937.1| RNA helicase/RNAse III, putative [Trichophyton verrucosum HKI 0517]
          Length = 1468

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 151/397 (38%), Gaps = 99/397 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K        + ++ T
Sbjct: 1033 QRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILTT 1092

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F           + P Y  T    AG             + E S  K            
Sbjct: 1093 CF-------TGAKWRPLYNSTYTNNAG------------KIGEKSTRK------------ 1121

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW 954
                                 +  K++AD VE+LIG  +I+ G    L    LF+   +W
Sbjct: 1122 ---------------------LSTKTLADVVESLIGVAIIDGGENKVLRCLELFLPEINW 1160

Query: 955  L-GLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L   + I  + +       D   D   K E  I+Y F  K+ L  +++H S  ++ +T  
Sbjct: 1161 LPSGERIEILYDSAPDFNDDCPRDILSKIEPLIDYSFTKKALLAASLSHPSNPISGMT-- 1218

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV---------- 1063
            YQRLEFLGD+ILD ++TR L+  +R      +  +R+ALVN    A L +          
Sbjct: 1219 YQRLEFLGDSILDNIVTRALFRCKREIPHQDMHLIRTALVNADFLAFLCMNTSTDETRED 1278

Query: 1064 ----------------RLGFHHFFKHLSPGLHEVIQRFVKM------QAENDFTLNQEYY 1101
                            ++    +  H S  + E  Q   +       Q EN       Y 
Sbjct: 1279 VCVSPTGEVEVTSSTRQVSLWQYMSHSSTDIVETQQAMARTFEELRDQIENALRSGARY- 1337

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                       +  PK   D+ ES+ GAI++DS  S+
Sbjct: 1338 ----PWTLLSTLNAPKFFSDIIESILGAIFIDSRGSI 1370


>gi|388495198|gb|AFK35665.1| unknown [Medicago truncatula]
          Length = 344

 Score = 82.4 bits (202), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 70/253 (27%), Positives = 114/253 (45%), Gaps = 12/253 (4%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D     E+ I Y F++K+ L +A+TH+SY  +     Y+RLEF+GDA+L + I+ HL+  
Sbjct: 7    DSVAAVEKIIGYTFRNKNLLEEALTHSSYPESV---SYERLEFIGDAVLGHAISNHLFLV 63

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                    L+ LRSA V+    A  AV    H + +  +  L E I+ F     +     
Sbjct: 64   YTNVDQRQLSLLRSANVSTEKLARAAVSNCLHRYIRLKTHSLAEHIREFAAAVEQEK--- 120

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
             +   L  G       ++  K L D+ ESVA A+Y+D    L  +W V   +++  +   
Sbjct: 121  GRAIVLYGGA------VKASKVLADVVESVAAAVYVDLDFDLKKLWVVIRGLLEPIVTLN 174

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTA 1216
             +     P+  L E+  +N +        +G +   +V V G+           IAK  A
Sbjct: 175  DLEQKPQPVTMLYEICHKNGKKVDIRHSRNGDKSTASVYVDGELFAVASSDQKDIAKLDA 234

Query: 1217 AKCALKHLKSAKP 1229
            AK A++ L+   P
Sbjct: 235  AKSAVQKLERVLP 247


>gi|321468964|gb|EFX79946.1| hypothetical protein DAPPUDRAFT_318955 [Daphnia pulex]
          Length = 311

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 8/144 (5%)

Query: 1010 LTDCY----QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
            LT C      RLE LGDA+L  L++  LY     + PG L   RSAL  N  F  L+V+ 
Sbjct: 102  LTSCTVKNGDRLEVLGDAVLGLLVSIGLYRTFTKYKPGDLIRHRSALTCNDSFGVLSVKF 161

Query: 1066 GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE----AEDIEVPKALGD 1121
            G H F   + P L     +FV+ Q E     + + Y +     +    A  I+VP  L D
Sbjct: 162  GIHKFLLGMPPSLLHNANKFVENQEEASHPYSNKSYSLARSTPQSSIAARCIKVPVVLAD 221

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            +FESV GAI++DS  SL  +   +
Sbjct: 222  VFESVTGAIFIDSKASLTALQNSF 245


>gi|326475978|gb|EGD99987.1| hypothetical protein TESG_07315 [Trichophyton tonsurans CBS 112818]
          Length = 1435

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 147/394 (37%), Gaps = 101/394 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K        + ++ T
Sbjct: 1000 QRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILTT 1059

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P                     L+N     N  ++  +   E+        
Sbjct: 1060 CFTGA-KWRP---------------------LYNSTYADNAGKIGEKSTREL-------- 1089

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                                    K++AD VE+LIGA +I+ G    L  +       +P
Sbjct: 1090 ----------------------STKTLADVVESLIGAAIIDGGENKVLRCLELF----LP 1123

Query: 962  PVTNPESKHLSDVLLDG------------FDKFEESINYRFKDKSYLLQAMTHASYFLNT 1009
             +    S    ++L D               K E  I+Y F  K+ L  +++H S  ++ 
Sbjct: 1124 EINWQPSGERIEILFDSAPDFNDDCPRDIMSKIEPLIDYSFTKKALLATSLSHPSNLISR 1183

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------ 1063
            +T  YQRLEFLGD+ILD ++TR L+  ++      +  +R+ALVN    A L +      
Sbjct: 1184 MT--YQRLEFLGDSILDNIVTRALFRCKKEIPHQDMHLIRTALVNADFLAFLCMNTSTDV 1241

Query: 1064 --------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLM 1103
                                ++    +  H S  + E  Q   +   E       E  L 
Sbjct: 1242 TREDVCVSPTGEVEVTSSTHQVSLWQYMSHSSTDIVETQQAIARTFEE--LRDQIEKALR 1299

Query: 1104 EGEC---DEAEDIEVPKALGDLFESVAGAIYLDS 1134
             G          +  PK   D+ ES+ GAI++DS
Sbjct: 1300 SGASYPWTLLSTLNAPKFFSDIIESILGAIFIDS 1333


>gi|347835506|emb|CCD50078.1| similar to dicer-like protein 2 [Botryotinia fuckeliana]
          Length = 1378

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 109/451 (24%), Positives = 176/451 (39%), Gaps = 119/451 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   + + HEG LS ++ + VSN    +   +    E ++  
Sbjct: 921  QRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMKDRIVSNSRSSRAAAEVGLDEYIMTK 980

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            K                          F  + W  + + +L          + +QK  ++
Sbjct: 981  K--------------------------FTGAKWRPMYVDDLV---------VTEQKTREM 1005

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LF---MSW 954
                                    K ++D VEALIGA +++ G   AL    LF   ++W
Sbjct: 1006 SS----------------------KILSDVVEALIGACMVDGGIPKALKSLQLFFPELNW 1043

Query: 955  LGLKVIPPVTNPESKHLSDVLLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L L+        ++ +  D+ L       E+ + Y F  KS L++AMTH SY   + T  
Sbjct: 1044 LPLETRQMTLYQQAAN--DLHLPIALRPVEQILAYTFTKKSLLVEAMTHPSY--TSGTQS 1099

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
             +RLEFLGD+ILD +I   ++      S   +  LRSALVN    A L + +       +
Sbjct: 1100 LERLEFLGDSILDNIIVTAMWSHSTPLSHFHMHLLRSALVNADFLAFLCMEMSIDQNVTN 1159

Query: 1074 LSPG----LHEVIQR----FVKMQAENDFTLNQEYYLMEGECDEAE-------------- 1111
            L+ G    +HE   R     V     +   L+   Y  E     AE              
Sbjct: 1160 LTEGKNHRIHETHSRRRVSLVSFLRHSSVRLS--IYQKEALSRHAELRDQILEAIYTGDT 1217

Query: 1112 -------DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSP 1164
                    ++  K   D+ ES+ GA+++DSG           E+    IER+ V      
Sbjct: 1218 FPWALLSRLDARKFFSDMIESLLGAVWIDSG---------SMEVCTQLIERMGV------ 1262

Query: 1165 IRELLELEPENARFSKPEK----LADGRRVR 1191
            +R +  +  +  R   P++    +AD   VR
Sbjct: 1263 LRYMRRILKDGVRIMHPKEELGIVADSENVR 1293



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 47/187 (25%), Positives = 86/187 (45%), Gaps = 27/187 (14%)

Query: 952  MSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESI--NYRFKDKSYLLQAMTHASYFLNT 1009
            +S  G+ +IP +T+    H+   L+   D+   +I  +    D+S +  A+THASY L++
Sbjct: 866  LSRFGM-MIPSITH----HIEVQLV--VDRLSRTILKDLEISDQSLIQTAITHASYSLDS 918

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
                YQRLEFLGD+IL    +  L  +      G L+ ++  +V+N   +  A  +G   
Sbjct: 919  ---NYQRLEFLGDSILKLCTSVQLVAEHLDWHEGYLSAMKDRIVSNSRSSRAAAEVGLDE 975

Query: 1070 FFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGA 1129
            +          + ++F   +    +    +  + E +  E       K L D+ E++ GA
Sbjct: 976  YI---------MTKKFTGAKWRPMYV--DDLVVTEQKTREMSS----KILSDVVEALIGA 1020

Query: 1130 IYLDSGM 1136
              +D G+
Sbjct: 1021 CMVDGGI 1027


>gi|327303976|ref|XP_003236680.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
 gi|326462022|gb|EGD87475.1| dicer-like protein 2 [Trichophyton rubrum CBS 118892]
          Length = 1460

 Score = 82.4 bits (202), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/397 (24%), Positives = 151/397 (38%), Gaps = 99/397 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K        + ++ T
Sbjct: 1025 QRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILTT 1084

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F     W P                     L+N     N  ++  +   E+        
Sbjct: 1085 CFTGA-KWRP---------------------LYNSTYTNNAGKIGEKSTREL-------- 1114

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW 954
                                    K++AD VE+LIGA +I+ G    L    LF+   +W
Sbjct: 1115 ----------------------STKTLADVVESLIGAAIIDGGENKVLHCLELFLPEINW 1152

Query: 955  L-GLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L   + I  + +       D   D   K E  I Y F  K+ L  +++H S  ++ +T  
Sbjct: 1153 LPSGERIEILYDSALDFNDDCPRDILSKVEPLIEYSFTKKALLAASLSHPSNPISGMT-- 1210

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV---------- 1063
            YQRLEFLGD+ILD ++TR L+  ++      +  +R+ALVN    A L +          
Sbjct: 1211 YQRLEFLGDSILDNIVTRALFRCKKEIPHQDMHLIRTALVNADFLAFLCMNTSTDETRED 1270

Query: 1064 ----------------RLGFHHFFKHLSPGLHEVIQRFVKM------QAENDFTLNQEYY 1101
                            ++    +  H S  + E  Q   +       Q EN       Y 
Sbjct: 1271 VCVSPTGEVEVTSSTRQVSLWQYMSHSSTDIVETQQAMARTFEELRGQIENALRSGARY- 1329

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                       +  PK   D+ ES+ GAI++DS  S+
Sbjct: 1330 ----PWTLLSTLNAPKFFSDIIESILGAIFIDSRGSI 1362


>gi|325093360|gb|EGC46670.1| dicer-like protein [Ajellomyces capsulatus H88]
          Length = 1436

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 115/259 (44%), Gaps = 37/259 (14%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            V Q  +  K++AD VEAL+ A  ++ G R A       L  + W+ L+  +  + +   +
Sbjct: 1028 VPQREMSTKTLADVVEALLAAATLDGGQRKAEKCLEIFLPELQWMPLEDRVNALYSSVPE 1087

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               + L   F + E  + Y F  K +L+QA TH S    + T  YQRLEF+GDAILD++I
Sbjct: 1088 AYENTLTSWFQEVESLVGYVFNKKVFLVQAFTHPSN-PGSKTSSYQRLEFVGDAILDHII 1146

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE--------- 1080
              HL+   R      +  +R+AL N    A L + +        ++    E         
Sbjct: 1147 VYHLFNAPRTLPHFDMHLMRTALANADFLAFLCIGMSTERVRGEIAECSKENTSTKLTTR 1206

Query: 1081 --VIQRFVKMQAENDFTLNQ-----EYYLMEGECDEAED------------IEVPKALGD 1121
               + ++++     + T  Q     +Y  ++ +  EA +            +   K   D
Sbjct: 1207 KVSLWQYMRHGTSWELTAAQQQTANQYQTLQADISEALEKSHTYPWTLLSRLHAQKFFSD 1266

Query: 1122 LFESVAGAIYLDSGMSLDT 1140
            L ESV GAI++DS  SL+ 
Sbjct: 1267 LIESVLGAIFIDSHGSLEA 1285


>gi|431806995|ref|YP_007233893.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
 gi|430780354|gb|AGA65638.1| ribonuclease III [Brachyspira pilosicoli P43/6/78]
          Length = 229

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 129/264 (48%), Gaps = 45/264 (17%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLI 1029
            ++ +LLD     E+ + Y FK+K+YLL+A+TH ++        Y QRLEFLGD++L  +I
Sbjct: 2    INKILLD----CEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLII 57

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + H+Y++      G L+ +++ LV+    AS++ +L    F                   
Sbjct: 58   SEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLKLGDF------------------- 98

Query: 1090 AENDFTLNQEYYLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYY 1146
                        L+ G+ +EA    E    L DLFE++ GAIYLDS +  + + V +VY 
Sbjct: 99   ------------LLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYK 146

Query: 1147 EIMK----SEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
            +I+     +  ++   ++ +  +++  ++ P    +   E   D    +V V V  K   
Sbjct: 147  DILNKLDINNFDKDYKTILQEIVQKKYKITPTYKSYEYNEN--DNIMFKVEVYVKTKKYA 204

Query: 1203 KGIGRNYCIAKCTAAKCALKHLKS 1226
             GIG++   A+  AAK AL+ +++
Sbjct: 205  SGIGKSKKEAEINAAKKALEEIEN 228



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 774 ENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL------FK 827
           EN      +RLE +GDS L   I+  +Y  Y NV EGKLS +++  VS   L       K
Sbjct: 35  ENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLK 94

Query: 828 LGKQKVFGESMIATKFEPRDNWLP 851
           LG   + G+   A+    RDN L 
Sbjct: 95  LGDFLLLGKGEEASGGRERDNMLE 118


>gi|169610828|ref|XP_001798832.1| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
 gi|160702165|gb|EAT83689.2| hypothetical protein SNOG_08521 [Phaeosphaeria nodorum SN15]
          Length = 1443

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 112/511 (21%), Positives = 194/511 (37%), Gaps = 122/511 (23%)

Query: 772  DLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK--LG 829
            + ++  GP+ +RLE +GD FLK A ++ ++   P  +E +    R   + N NL +  +G
Sbjct: 969  NFKSGMGPNYERLEFLGDCFLKVATSLSVFVQQPEENEFEFHVRRMLMLCNQNLMETAVG 1028

Query: 830  KQKVFGES----------MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSL 879
            K+KV   +           + T    R NW P G                          
Sbjct: 1029 KKKVASANGTERDLQLYKYVRTDAFSRRNWYPEG-------------------------- 1062

Query: 880  PNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
                       L++++ K +       +NV           H++ DKS+AD  EA IGA 
Sbjct: 1063 -----------LKLLRGKGLKKTEEDWLNVT----------HNLGDKSVADVCEAFIGAA 1101

Query: 940  LIECGPRGALLFMSW-LGLKVIPPVTNPESKHL---------------------SDVLLD 977
             ++    G      W   +K +    N +  HL                     +   LD
Sbjct: 1102 FMQHHKGGQWTPNDWDEAVKAVKLFANSDD-HLMEKWTDYYAAYTKPKYQTAGATATQLD 1160

Query: 978  GFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
               K E    YRF+    L  A  H S  F+      YQRLEFLGD++LD     HL+  
Sbjct: 1161 LAHKIEMKHPYRFRYPRLLRSAFIHPSQPFMWENIPSYQRLEFLGDSLLDMAFIMHLFYK 1220

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                 P  LT+ ++ +V+N    ++ +R             ++EV       +AE +   
Sbjct: 1221 YPDKDPQWLTEHKTPMVSNKFLGAVQIR-----------DYVYEV------EEAEREANG 1263

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK--------VYYEI 1148
              +Y++   E         PK L D+ E+   AI++DS    + V K         + ++
Sbjct: 1264 AVDYWVSVSEP--------PKCLADVIEAFVAAIFVDSEFDFNVVQKFFDLHLKPFFLDM 1315

Query: 1149 MKSEIERLSVSVPKSPIRELLELEPENARFS----KPEKL--ADGRRVRVTVEVFGKGSY 1202
                 E  + + P + +  LL +    + +     + E L    G+ +   V +  K  +
Sbjct: 1316 TLDAYENFASNHPTTRLSRLLSINFGCSEWRMGALETETLIPGKGKAIAAMVMIHDKVHF 1375

Query: 1203 KGIGRNYCIAKCTAAKCALKHLKSAKPADVK 1233
              +G++   A+  A+  AL+ L+   P + +
Sbjct: 1376 HSLGQSGRYARVRASHAALEKLEGLPPYEFR 1406


>gi|330944921|ref|XP_003306459.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
 gi|311316023|gb|EFQ85435.1| hypothetical protein PTT_19601 [Pyrenophora teres f. teres 0-1]
          Length = 1448

 Score = 82.0 bits (201), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 153/396 (38%), Gaps = 96/396 (24%)

Query: 778  GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG-----KQK 832
            G   +RLE +GD  LK+  ++ L      + EG L+  + K VSN  L +        Q 
Sbjct: 1010 GNDYQRLEFLGDCILKFIASLHLMAANLQMPEGMLTGKKGKLVSNGYLARATLAAGLDQY 1069

Query: 833  VFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLE 892
            +F +     K++PR            Y+   L E+          +LP  +E S      
Sbjct: 1070 IFYKRFTGAKWKPR------------YISLVLAES----------TLPEKQEKS------ 1101

Query: 893  IIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA---- 948
                                             K IAD +E+LIGA  I  G   A    
Sbjct: 1102 --------------------------------SKLIADVIESLIGASYIIGGFSKAFACV 1129

Query: 949  ---LLFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY 1005
               L    W  L     +    + H   V+  G    E+ + Y+F +K+ LL+A+TH + 
Sbjct: 1130 QTLLPLEKWTPLAEAKEILYNAAPHQDTVMSLGL--IEKLLGYKFNNKALLLEALTHVT- 1186

Query: 1006 FLNTLTDC-YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
            F    T+C Y+R EFLGDA+LDY+++R LY  +   S   +  +R+A+VN    A     
Sbjct: 1187 FRGLNTNCSYERHEFLGDAVLDYIVSRKLYAHKPELSHRKMHGIRTAMVNASFLAYSMFE 1246

Query: 1065 LGFHHFFKH---LSPGLHE--------------VIQRFVKMQAENDFTLNQEYYLMEGEC 1107
                    +   L P +H+              V  R +  Q   +        L     
Sbjct: 1247 TTVTEELTNKNTLEPEVHQRALWQFLRCTSNELVASRIIATQQHAEARNRIATGLKHDSR 1306

Query: 1108 DEAEDIEV---PKALGDLFESVAGAIYLDSGMSLDT 1140
               + + +   PK L D+ ESV GA+Y+DS  S+ T
Sbjct: 1307 FPWQALSLTDPPKYLSDIVESVIGALYIDSHGSIAT 1342



 Score = 43.1 bits (100), Expect = 0.99,   Method: Compositional matrix adjust.
 Identities = 30/97 (30%), Positives = 49/97 (50%), Gaps = 6/97 (6%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPIN-SPLKRSVTGH 59
           +DNA   ++ +CARL S  +  + P    +     D    T  + LPI+  P  R+    
Sbjct: 616 LDNASQHLHHFCARLASGTYANMTPEFDFTH----DHGQITAKVTLPISVDPKVRTAKSL 671

Query: 60  KM-PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE 95
           K   T+ +A + AA EA + LY  K ++++L+PV  E
Sbjct: 672 KTWVTERMAQKDAAFEAYKALYHAKLVNDNLLPVRDE 708


>gi|429847845|gb|ELA23398.1| dicer-like protein 2 [Colletotrichum gloeosporioides Nara gc5]
          Length = 1453

 Score = 81.6 bits (200), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 69/254 (27%), Positives = 116/254 (45%), Gaps = 45/254 (17%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGAL--------LFMSWLGLKVIPPVTNPESKHLSDV 974
            I  K++AD VEALIGA +I+ G  G L        +F+  +  + I    +   + L DV
Sbjct: 1081 ISTKTLADIVEALIGASMIDGGEDGGLSKALDCMSIFLQQIKWRRI----DDCRQLLYDV 1136

Query: 975  LLDGFD------KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYL 1028
              D  +        EE I Y F  KS L+Q+MTHAS        C +RLEF+GDA+LDY+
Sbjct: 1137 APDNVELPSTLKPLEELIGYDFDKKSLLIQSMTHASSNFGNPLGCLERLEFIGDAVLDYI 1196

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH---FFKHLSPGLHEV---- 1081
            I   L+      S  ++  L++A+VN      L++             +   + E+    
Sbjct: 1197 IVNRLFSIRPHLSHQSMHLLKTAVVNGDFLGFLSLEQSVEQEEVVIGEIRDKVPELKRSR 1256

Query: 1082 ----IQRFVKMQAE----NDFTLNQEYYLMEGECDEAED------------IEVPKALGD 1121
                + +F++ Q+         + + +  M G   +A +            +++ K   D
Sbjct: 1257 FTLPLWKFMRHQSSAVGLEQINIEKRHAEMRGPIIDAMEHGATYPWALLARLQLRKFYSD 1316

Query: 1122 LFESVAGAIYLDSG 1135
            +FES+ GA+++D+G
Sbjct: 1317 IFESLLGAVWVDAG 1330


>gi|434381810|ref|YP_006703593.1| ribonuclease III [Brachyspira pilosicoli WesB]
 gi|404430459|emb|CCG56505.1| ribonuclease III [Brachyspira pilosicoli WesB]
          Length = 229

 Score = 81.6 bits (200), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 45/264 (17%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLI 1029
            ++ +LLD     E+ + Y FK+K+YLL+A+TH ++        Y QRLEFLGD++L  +I
Sbjct: 2    INKILLD----CEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLII 57

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + H+Y++      G L+ +++ LV+    AS++ +L    F                   
Sbjct: 58   SEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLKLGDF------------------- 98

Query: 1090 AENDFTLNQEYYLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYY 1146
                        L+ G+ +EA    E    L DLFE++ GAIYLDS +  + + V +VY 
Sbjct: 99   ------------LLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYK 146

Query: 1147 EIMK----SEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
            +I+     +  ++   ++ +  +++  ++ P    +   E   D    +V V V  K   
Sbjct: 147  DILNKLDINNFDKDYKTILQEIVQKKYKITPTYKSYEYNEN--DNIMFKVEVYVKTKKYA 204

Query: 1203 KGIGRNYCIAKCTAAKCALKHLKS 1226
             G+G++   A+  AAK AL+ +++
Sbjct: 205  SGVGKSKKEAEINAAKKALEEIEN 228



 Score = 45.4 bits (106), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 774 ENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL------FK 827
           EN      +RLE +GDS L   I+  +Y  Y NV EGKLS +++  VS   L       K
Sbjct: 35  ENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLASISRKLK 94

Query: 828 LGKQKVFGESMIATKFEPRDNWLP 851
           LG   + G+   A+    RDN L 
Sbjct: 95  LGDFLLLGKGEEASGGRERDNMLE 118


>gi|302502160|ref|XP_003013071.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
 gi|291176633|gb|EFE32431.1| RNA helicase/RNAse III, putative [Arthroderma benhamiae CBS 112371]
          Length = 1490

 Score = 81.3 bits (199), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 99/397 (24%), Positives = 151/397 (38%), Gaps = 99/397 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   ++ L   +P  HEG LS  +   VSN  L+K        + ++ T
Sbjct: 1055 QRLEFLGDSALKLHASMQLLAEHPLWHEGILSKKKDSIVSNSRLWKAAVDTGLDQFILTT 1114

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F           + P Y  T    AG             + E S  K            
Sbjct: 1115 CFTG-------AKWRPLYNSTYTDNAG------------KIGEKSTRK------------ 1143

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW 954
                                 +  K++AD VE+LIG  +I+ G    L    LF+   +W
Sbjct: 1144 ---------------------LSTKTLADVVESLIGVAIIDGGENKVLRCLELFLPEINW 1182

Query: 955  L-GLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
            L   + I  + +       D   D   K E  I+Y F  K+ L  +++H S  ++ +T  
Sbjct: 1183 LPSGERIEILYDSAPDFNDDCPRDILSKIEPLIDYSFTKKALLAASLSHPSNPISGMT-- 1240

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV---------- 1063
            YQRLEFLGD+ILD ++TR L+  ++      +  +R+ALVN    A L +          
Sbjct: 1241 YQRLEFLGDSILDNIVTRALFRCKKEIPHQDMHLIRTALVNADFLAFLCMNTSTDETRED 1300

Query: 1064 ----------------RLGFHHFFKHLSPGLHEVIQRFVKM------QAENDFTLNQEYY 1101
                            ++    +  H S  + E  Q   +       Q EN       Y 
Sbjct: 1301 VCVSPTGEVEVTSSTRQVSLWQYMSHSSTDIVETQQAMARTFEELRDQIENALRSGARY- 1359

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                       +  PK   D+ ES+ GAI++DS  S+
Sbjct: 1360 ----PWTLLSTLNAPKFFSDIIESILGAIFIDSRGSI 1392


>gi|300869947|ref|YP_003784818.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
 gi|300687646|gb|ADK30317.1| ribonuclease III [Brachyspira pilosicoli 95/1000]
          Length = 229

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 71/264 (26%), Positives = 129/264 (48%), Gaps = 45/264 (17%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLI 1029
            ++ +LLD     E+ + Y FK+K+YLL+A+TH ++        Y QRLEFLGD++L  +I
Sbjct: 2    INKILLD----CEKVLQYSFKNKNYLLEAITHRTFANENGNMKYNQRLEFLGDSVLSLII 57

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + H+Y++      G L+ +++ LV+    A+++ +L    F                   
Sbjct: 58   SEHIYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLKLGDF------------------- 98

Query: 1090 AENDFTLNQEYYLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYY 1146
                        L+ G+ +EA    E    L DLFE++ GAIYLDS +  + + V +VY 
Sbjct: 99   ------------LLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYK 146

Query: 1147 EIMK----SEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
            +I+     +  ++   ++ +  +++  ++ P    +   E   D    +V V V  K   
Sbjct: 147  DILNKLDINNFDKDYKTILQEIVQKKYKITPTYKSYEYNEN--DNIMFKVEVYVKTKKYA 204

Query: 1203 KGIGRNYCIAKCTAAKCALKHLKS 1226
             GIG++   A+  AAK AL+ +++
Sbjct: 205  SGIGKSKKEAEINAAKKALEEIEN 228



 Score = 45.4 bits (106), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 31/84 (36%), Positives = 41/84 (48%), Gaps = 6/84 (7%)

Query: 774 ENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL------FK 827
           EN      +RLE +GDS L   I+  +Y  Y NV EGKLS +++  VS   L       K
Sbjct: 35  ENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLK 94

Query: 828 LGKQKVFGESMIATKFEPRDNWLP 851
           LG   + G+   A+    RDN L 
Sbjct: 95  LGDFLLLGKGEEASGGRERDNMLE 118


>gi|116205049|ref|XP_001228335.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
 gi|88176536|gb|EAQ84004.1| hypothetical protein CHGG_10408 [Chaetomium globosum CBS 148.51]
          Length = 1227

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/299 (28%), Positives = 118/299 (39%), Gaps = 71/299 (23%)

Query: 778  GPSP-KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
            GP+  +R+E +GDS LK+  TI    TY    EG LS L+ K VSN  LF+      FG 
Sbjct: 960  GPTDYERIEFLGDSILKFCTTINCSATYLKFPEGCLSPLKDKIVSNSRLFRAAVD--FG- 1016

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
                                   L+  +I   F    W            P  V ++I+ 
Sbjct: 1017 -----------------------LDRYIIHKAFTLHKWR-----------PTYVEDLIEN 1042

Query: 897  KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLG 956
                             P +      I  K IAD VEALIG   +  G   AL  MS   
Sbjct: 1043 -----------------PPSATETRRISTKIIADVVEALIGTAFVSGGISKALACMSLF- 1084

Query: 957  LKVIPPVTNPESKHLSDVLLD----------GFDKFEESINYRFKDKSYLLQAMTHASYF 1006
               +P V     ++  +V+ +             + E  + Y F  K+ L++AMTH S  
Sbjct: 1085 ---LPDVAWNSIEYGREVMYNEAPDDEPLPRTMRQLESLVGYTFTKKALLVEAMTHPSCN 1141

Query: 1007 LNTLTDCYQRLEFLGDAILDYLITRHLY--EDERAHSPGTLTDLRSALVNNIIFASLAV 1063
               +     RLEFLGDAILDY++   L+   D       +L  LR+ALVN  I   L +
Sbjct: 1142 GPGIRASLDRLEFLGDAILDYVVVNKLFAISDPAPLENSSLHLLRTALVNADILGFLVM 1200



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 42/173 (24%), Positives = 73/173 (42%), Gaps = 16/173 (9%)

Query: 966  PESKHLSDVLLDGFDKFEESI-NYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAI 1024
            P   H  +V L   D  E  +      D S ++ A+T ++      TD Y+R+EFLGD+I
Sbjct: 918  PAITHALEVHLVAKDLLESRLEQTGITDLSLIVTAITASAA--RGPTD-YERIEFLGDSI 974

Query: 1025 LDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR 1084
            L +  T +          G L+ L+  +V+N      AV  G   +  H +  LH+    
Sbjct: 975  LKFCTTINCSATYLKFPEGCLSPLKDKIVSNSRLFRAAVDFGLDRYIIHKAFTLHKWRPT 1034

Query: 1085 FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            +V+   EN  +  +   +              K + D+ E++ G  ++  G+S
Sbjct: 1035 YVEDLIENPPSATETRRIST------------KIIADVVEALIGTAFVSGGIS 1075


>gi|291000766|ref|XP_002682950.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
 gi|284096578|gb|EFC50206.1| hypothetical protein NAEGRDRAFT_62031 [Naegleria gruberi]
          Length = 1386

 Score = 80.9 bits (198), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 70/239 (29%), Positives = 120/239 (50%), Gaps = 42/239 (17%)

Query: 926  KSIADCVEALIG-AYLIECGPRGAL-LFMSWLGLKV-IPPVTNPESKHLSDVLL--DGFD 980
            K +AD VE++IG  Y I  G    +  F+  +G+ +    ++  E   ++  LL  + F+
Sbjct: 1041 KVLADVVESIIGFCYHIFGGSLEQINRFLGLVGVSLPKGEISGSEDIFMNQKLLLRNHFE 1100

Query: 981  KFE-------ESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
            K +       E +N++F++   LL+A  H SY  N + + Y+RLEFLGD++L  ++T  +
Sbjct: 1101 KLKIDLYKLTEKLNFQFENSGLLLEAFIHPSY--NGVFN-YERLEFLGDSVLGLIVTSKI 1157

Query: 1034 YED---ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090
            +E      + S G ++ LR  +V N  FA+L +     ++   +  G H + Q+ V  + 
Sbjct: 1158 FEKFHKNSSFSLGMMSKLREKIVMNKNFANLCIENQLQNYI--IFSGNH-IAQQVVHSK- 1213

Query: 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
                                +D E  K L D+FES+AGA+++DS   LDTV  +Y E +
Sbjct: 1214 --------------------DDGEYVKMLSDVFESLAGALFVDSHYDLDTVKLIYDEFL 1252



 Score = 54.7 bits (130), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 69/152 (45%), Gaps = 21/152 (13%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            Y++LEF GD+IL Y++++H+Y +   +S G+L+ L+   V+N   AS+A       F   
Sbjct: 951  YEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSNYFLASVARNTRLPLFIIT 1010

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                  +++Q     ++ N F             DE       K L D+ ES+ G  Y  
Sbjct: 1011 EPLNTSQLVQNIGGFKS-NKF------------ADETNIEAEYKVLADVVESIIGFCYHI 1057

Query: 1134 SGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
             G SL+ + +         +  + VS+PK  I
Sbjct: 1058 FGGSLEQINRF--------LGLVGVSLPKGEI 1081



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 100/456 (21%), Positives = 184/456 (40%), Gaps = 105/456 (23%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKR-SVTGH 59
           ++N+I + N+YCA  P+       P  +I      D   F   I  P N P+   S++ +
Sbjct: 528 LNNSIRLYNQYCAVFPNQSIDEKKPKFSIYA----DGPFFVTEITFPTNCPVPVFSISNN 583

Query: 60  K-------MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEP------- 105
                      KL++ R  A +A ++L++ KELD+ L P   +++  + +TE        
Sbjct: 584 HEDDPAQYRLNKLVSKRYCAFKAVQLLHKYKELDDSLFPRYSKYV--FASTEAEFASPAS 641

Query: 106 ---VVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQ 162
              ++P+ PEI  + +         K++ S  T+  PS     Y+Y + +       D  
Sbjct: 642 MATLLPQMPEIFNWRE---------KKLNSIQTD-NPS--HCVYIYDIFL-------DNN 682

Query: 163 NKRGRKIHPPE--NSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENL 220
               + I P E  +  + L +L             F   G   ++I+ ++   V   + +
Sbjct: 683 ATDFQFIIPNEIDSDLEELGLLN------------FRMNGGRHITIKKMESTTV-DNDYI 729

Query: 221 SNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHN 280
                + +++F KV K+  +      N  + ++FI+P    ++Q  ID   + +I +HH 
Sbjct: 730 LKCFEYHEFMFNKVAKI-SFPDQKQRNLQDWTFFIIP--KQAQQHFIDVPVLDII-QHHG 785

Query: 281 DVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNT 340
                   KE EN +      ++ ++   Y ++     + +  I  + +P+S F   T  
Sbjct: 786 --------KEAENIL------KNMILETIYNHRV----YLLQNIEFDKNPKSHFD--TED 825

Query: 341 YQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIR 400
           +  ++ YY  K+GL+I+  +QPLL             PR+       L +T  E      
Sbjct: 826 FPDYKTYYKEKWGLEIERPQQPLLRA---------YQPRFS-----TLGSTQVE------ 865

Query: 401 ESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYR 436
               +   LVPE      F   + R     P  LYR
Sbjct: 866 ---HQNIFLVPEFLTACSFTIEMLRFLKLAPEFLYR 898



 Score = 42.7 bits (99), Expect = 1.4,   Method: Compositional matrix adjust.
 Identities = 21/56 (37%), Positives = 32/56 (57%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
            +  G + ++LE  GDS LKY ++  +Y  +P    G LS L+ K VSNY L  + +
Sbjct: 945  SQVGANYEKLEFFGDSILKYIVSKHIYHEFPLYSSGSLSQLQHKFVSNYFLASVAR 1000


>gi|396464039|ref|XP_003836630.1| similar to dicer-like protein 2 [Leptosphaeria maculans JN3]
 gi|312213183|emb|CBX93265.1| similar to dicer-like protein 2 [Leptosphaeria maculans JN3]
          Length = 1393

 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 86/276 (31%), Positives = 126/276 (45%), Gaps = 63/276 (22%)

Query: 923  IPDKSIADCVEALIGAYLIECG-PRGALLFMSWLGLK---VIPPVTNPESKHLSDVLLD- 977
            +  K IAD VE++IGA  +  G P+      + L L+    IP   N        +L D 
Sbjct: 1028 LSSKLIADVVESIIGASFVVGGFPKAFACIQTLLPLENWISIPDANN--------ILYDF 1079

Query: 978  --------GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
                    G    E  I + F  K  LL A+THASY    +   YQR EFLGDA+LD++I
Sbjct: 1080 AQEGPTFTGLSTLERLIGHTFSKKFLLLDAITHASYLGPNVHCDYQRTEFLGDAVLDFII 1139

Query: 1030 TRHLYEDERAHSP----GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS--PGLHEVIQ 1083
            T+ LY    AH+P     T+  +R+A+VN    + LA R+      +HL+    L   +Q
Sbjct: 1140 TKRLY----AHTPPLEHQTMHAIRTAMVNA---SFLAFRMFETTIDEHLTNKATLQTDVQ 1192

Query: 1084 -----RFVKMQA-------ENDFTLNQE---YYLMEGECDEAEDIEV------PKALGDL 1122
                 +F++  A       E  F  +QE     L+  E D      +      PK L D+
Sbjct: 1193 SRALWQFLRSGAPQVNAAREIAFKQHQEARGQILVALERDARYPWHLLALTDPPKFLSDI 1252

Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
             ESV GAIY+DS        +  + I ++ ++RL +
Sbjct: 1253 VESVLGAIYIDS--------RGDFSICQAFVQRLGI 1280


>gi|302808147|ref|XP_002985768.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
 gi|300146677|gb|EFJ13346.1| hypothetical protein SELMODRAFT_122841 [Selaginella moellendorffii]
          Length = 219

 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 56/179 (31%), Positives = 93/179 (51%), Gaps = 16/179 (8%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-IPPVTNPESKHLSDVLL----- 976
            +  K++AD VEA++GA ++E     A+   +WL + V  PP    E  H  +V       
Sbjct: 13   LSTKTLADVVEAVLGACVLEGELAAAMAAANWLQIPVRFPP--EAEDHHRFEVTGCGSLT 70

Query: 977  -DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
             D   + +E + Y+F++K  L  A+   S+  +  T  ++RLEFLGDA+LDYL+TRHL  
Sbjct: 71   DDDLKELQEKLGYQFRNKQVLRVAL---SFHDDNFT--FRRLEFLGDAVLDYLVTRHLVR 125

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK--HLSPGLHEVIQRFVKMQAEN 1092
                 S G    ++ A +N   ++ +++R GFH + +  H  P + E  +  V+  A  
Sbjct: 126  SFPDQSAGRHNTIKQATINKEHYSCISIRHGFHVYLQKVHFVPQIAEFAESLVEEHARG 184


>gi|46132992|ref|XP_389201.1| hypothetical protein FG09025.1 [Gibberella zeae PH-1]
          Length = 1495

 Score = 80.1 bits (196), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 70/259 (27%), Positives = 104/259 (40%), Gaps = 42/259 (16%)

Query: 906  DMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN 965
            D+ ++    +    +  + DKSIAD  EALIGA  +             L + V      
Sbjct: 1108 DLTLRKGKAFKATARQRLADKSIADVCEALIGAAYLSSKDDN-------LNMAVKAVSQM 1160

Query: 966  PESKHLSDVLLDGF----------------------DKFEESINYRFKDKSYLLQAMTHA 1003
             ++K+ + +  D +                       K  ++  Y FK    L  A TH 
Sbjct: 1161 CKAKYHTMMAYDEYYASFKVPDWQKASPNANQRRLVQKVADATGYHFKSAPLLQSAFTHP 1220

Query: 1004 SYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            SY  +     YQRLEFLGDA++D  I  +LY +     P  LT+ + A+ +N     L V
Sbjct: 1221 SYAYSGNVPNYQRLEFLGDALIDMTIVEYLYRNFPLADPQWLTEHKMAMASNQFLGCLCV 1280

Query: 1064 RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--------EDIEV 1115
            +L  HH   HL     + I +     AE    L +E    E E D               
Sbjct: 1281 KLNLHH---HLLFNTSQFISKIRDYVAE--LELAEETARQEAEEDGTPMRMDFWLNATTP 1335

Query: 1116 PKALGDLFESVAGAIYLDS 1134
            PKA  D  E++ GA+++DS
Sbjct: 1336 PKAYADSIEALMGAMFVDS 1354



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 96/424 (22%), Positives = 167/424 (39%), Gaps = 88/424 (20%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           FT ++ LP +SP+  S TG+   +KLLA   AA E C+ L   K +D+ L P  K+  + 
Sbjct: 638 FTAAVNLPSSSPIV-SQTGYPQRSKLLAKCSAAFEVCKKLINGKHIDDHLQPTFKKHFHK 696

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMA-SCFTNCRPSVNTPCYLYAVKMKLTCPI 158
             N    V  +P  +   D   R   +  R   + F   R +++  C             
Sbjct: 697 MRNAR--VGISPNKKGEHDMRLRPNVWSIRGEWTHFFPTRITLDRDC------------- 741

Query: 159 PDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF---TRCGEVEVSIELIDKNVVL 215
             E+N+              L +L+   +P + S P+F    R   VEV+     + + +
Sbjct: 742 -GEKNR-------------SLILLSRSPLPGLPSIPLFFGNGRSAIVEVTCS--QEPLPI 785

Query: 216 SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS---EQIVIDWKFM 272
           + E       F   +F  V   +     F+  C +  Y + P   D+   E   IDW  +
Sbjct: 786 TTEEAGGLTAFTLKIFADVFSKE-----FEATCDQFPYLLAPLAKDTNLNEISRIDWDTV 840

Query: 273 TLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRS 332
            L+ +H +   ++ P    ++F FD+      VV P+   +       +  I  +  P  
Sbjct: 841 NLVRDHDSLEWENAP----DDFFFDK-----LVVDPYDGGR----KLIIKGIDKSKKPSD 887

Query: 333 MFP-----SRTNTYQTFEE---YYS----LKYGLQIQ-NLEQPLLDVDHTSCRLNFLTPR 379
             P     SR+  Y++ E+    YS     K  L  Q   +QP++  +  S R N L   
Sbjct: 888 PTPEGVPESRSRAYRSAEQNIKQYSNSLFSKSRLTAQWRDDQPVVKAELLSLRRNLLDEF 947

Query: 380 YVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNA 439
            VN                  E + K   ++ E   + P P  +   ++  P+I++R+++
Sbjct: 948 QVN------------------EEINKDCFVILEPLNVSPLPIDVVSMALKFPAIIHRIDS 989

Query: 440 LLLA 443
            L+A
Sbjct: 990 ALIA 993


>gi|126698844|ref|YP_001087741.1| ribonuclease III [Clostridium difficile 630]
 gi|254974792|ref|ZP_05271264.1| ribonuclease III [Clostridium difficile QCD-66c26]
 gi|255092180|ref|ZP_05321658.1| ribonuclease III [Clostridium difficile CIP 107932]
 gi|255100264|ref|ZP_05329241.1| ribonuclease III [Clostridium difficile QCD-63q42]
 gi|255306204|ref|ZP_05350376.1| ribonuclease III [Clostridium difficile ATCC 43255]
 gi|255313919|ref|ZP_05355502.1| ribonuclease III [Clostridium difficile QCD-76w55]
 gi|255516598|ref|ZP_05384274.1| ribonuclease III [Clostridium difficile QCD-97b34]
 gi|255649698|ref|ZP_05396600.1| ribonuclease III [Clostridium difficile QCD-37x79]
 gi|260682854|ref|YP_003214139.1| ribonuclease III [Clostridium difficile CD196]
 gi|260686452|ref|YP_003217585.1| ribonuclease III [Clostridium difficile R20291]
 gi|306519814|ref|ZP_07406161.1| ribonuclease III [Clostridium difficile QCD-32g58]
 gi|384360443|ref|YP_006198295.1| ribonuclease III [Clostridium difficile BI1]
 gi|423082364|ref|ZP_17070956.1| ribonuclease III [Clostridium difficile 002-P50-2011]
 gi|423087756|ref|ZP_17076142.1| ribonuclease III [Clostridium difficile 050-P50-2011]
 gi|423090834|ref|ZP_17079120.1| ribonuclease III [Clostridium difficile 70-100-2010]
 gi|115250281|emb|CAJ68103.1| ribonuclease III [Clostridium difficile 630]
 gi|260209017|emb|CBA62108.1| putative ribonuclease III [Clostridium difficile CD196]
 gi|260212468|emb|CBE03371.1| putative ribonuclease III [Clostridium difficile R20291]
 gi|357544070|gb|EHJ26076.1| ribonuclease III [Clostridium difficile 050-P50-2011]
 gi|357548690|gb|EHJ30550.1| ribonuclease III [Clostridium difficile 002-P50-2011]
 gi|357555949|gb|EHJ37571.1| ribonuclease III [Clostridium difficile 70-100-2010]
          Length = 236

 Score = 80.1 bits (196), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 119/263 (45%), Gaps = 46/263 (17%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLI 1029
            +S  LLD   +FE  INY+FK+K Y+L+A+TH+SY   N   +  +RLEFLGD++L  +I
Sbjct: 3    ISKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVI 62

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + +L+ +E     G LT LR+ +V     + +A                           
Sbjct: 63   SDYLFNEEANLPEGELTKLRANIVCEDSLSEVA--------------------------- 95

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS------LDTVWK 1143
              ND  L     L  GE +          L D FE+V  AIYLD G        L  +  
Sbjct: 96   --NDINLGIHMLLGRGE-EATGGRHRTSILADAFEAVIAAIYLDGGFESARQFILHHMEN 152

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK--PEKLADGRRVRVTVEVFGKGS 1201
            + Y+  K  I R      K+ ++E+L+   EN  + +   EK  D  + R  +EV     
Sbjct: 153  IIYDSRKGNIFRDY----KTHLQEVLQGNGENNIWYRLIEEKGPDHNK-RFVMEVGINDD 207

Query: 1202 YKGI--GRNYCIAKCTAAKCALK 1222
              GI  G++   A+  AAK ALK
Sbjct: 208  VLGIGEGKSKKEAEQLAAKIALK 230


>gi|297836192|ref|XP_002885978.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297331818|gb|EFH62237.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 740

 Score = 79.7 bits (195), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 72/269 (26%), Positives = 123/269 (45%), Gaps = 26/269 (9%)

Query: 972  SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITR 1031
            S++  D     E+ +NY F +K+ L +A+TH S   N L   +QRL F+G A +      
Sbjct: 366  SEIDSDPVKAVEKILNYSFTNKNLLREALTHNSS--NLLP--FQRLMFVGKAGISLAFAN 421

Query: 1032 HLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK-HLSPGLHEVIQRFVKMQA 1090
            H+Y       P  LT L++A   N  +A +AV+ G + F K ++     ++I+ F+KM  
Sbjct: 422  HMYLTYPKLGPKELTMLQNANTCNDRYARVAVKRGIYQFLKCNVRTSKRQIIE-FIKMLG 480

Query: 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
            + D            + D    ++ PK L DL ESVAGA+Y+D    +  +W++   + +
Sbjct: 481  KED------------DPDPFRSVKAPKILTDLVESVAGAVYIDVNRDVKRLWEILRGLFE 528

Query: 1151 SEIERLSVSVPKSPIRELLELEPENA-----RFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
                   +     P+  L  L  ++      R+ + EK + G       EV+    +   
Sbjct: 529  PIYTLDDIRRKPHPLLTLFCLGYKHGKRIEFRYRECEK-SSGMNEATITEVYVDDKFIAC 587

Query: 1206 GR--NYCIAKCTAAKCALKHLKSAKPADV 1232
            G+  N   +K  AA  AL+ L  + P ++
Sbjct: 588  GKSCNRAASKMRAATMALEKLSESMPIEL 616



 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 54/178 (30%), Positives = 92/178 (51%), Gaps = 11/178 (6%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC--YQRLEFLGDAILDYLITRHL 1033
            ++  +  E+ +NY F DK+ L +A+T  S   NT +    ++RLEFLGD++L  + + H+
Sbjct: 1    MESVEAVEKILNYTFTDKNLLKEAITKTSGS-NTESSSLLFERLEFLGDSVLLVVFSNHI 59

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF--FKHLSPGLHE----VIQRFVK 1087
                    P  L D+R A V+N  FA +AV    H F  F   +P LH+    +  ++  
Sbjct: 60   EITYPNLHPNDLNDVRIANVSNETFARVAVNNNLHQFIIFDAPNPLLHKMSHVLTNKWCH 119

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
            +    DF+   +  +    C     ++ PK L DL E++AGA+Y+D    +  VW+++
Sbjct: 120  VLKIKDFSEAVKEEVYPAPCGGL--VKAPKFLADLVEAIAGAVYIDVDFDVQRVWEIF 175


>gi|255655258|ref|ZP_05400667.1| ribonuclease III [Clostridium difficile QCD-23m63]
 gi|296451243|ref|ZP_06892983.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296880405|ref|ZP_06904368.1| ribonuclease III [Clostridium difficile NAP07]
 gi|296259849|gb|EFH06704.1| ribonuclease III [Clostridium difficile NAP08]
 gi|296428646|gb|EFH14530.1| ribonuclease III [Clostridium difficile NAP07]
          Length = 236

 Score = 79.7 bits (195), Expect = 9e-12,   Method: Composition-based stats.
 Identities = 81/263 (30%), Positives = 119/263 (45%), Gaps = 46/263 (17%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLI 1029
            +S  LLD   +FE  INY+FK+K Y+L+A+TH+SY   N   +  +RLEFLGD++L  +I
Sbjct: 3    ISKKLLDNIQRFENVINYKFKNKEYILEALTHSSYSNENKKYNFNERLEFLGDSVLGIVI 62

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + +L+ +E     G LT LR+ +V     + +A                           
Sbjct: 63   SDYLFNEEANLPEGELTKLRANIVCEDSLSEVA--------------------------- 95

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS------LDTVWK 1143
              ND  L     L  GE +          L D FE+V  AIYLD G        L  +  
Sbjct: 96   --NDINLGVHMLLGRGE-EATGGRHRTSILADAFEAVIAAIYLDGGFESARQFILHHMEN 152

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK--PEKLADGRRVRVTVEVFGKGS 1201
            + Y+  K  I R      K+ ++E+L+   EN  + +   EK  D  + R  +EV     
Sbjct: 153  IIYDSRKGNIFRDY----KTHLQEVLQGNGENNIWYRLIEEKGPDHNK-RFVMEVGINED 207

Query: 1202 YKGI--GRNYCIAKCTAAKCALK 1222
              GI  G++   A+  AAK ALK
Sbjct: 208  VLGIGEGKSKKEAEQLAAKIALK 230


>gi|121714731|ref|XP_001274976.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
 gi|158706439|sp|A1C9M6.1|DCL2_ASPCL RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease dcl2; Includes: RecName:
            Full=ATP-dependent helicase dcl2
 gi|119403130|gb|EAW13550.1| RNA helicase/RNAse III, putative [Aspergillus clavatus NRRL 1]
          Length = 1389

 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/250 (27%), Positives = 109/250 (43%), Gaps = 31/250 (12%)

Query: 920  QHSIPDKSIADCVEALIGAYLIECGPRGALL----FMSWLGLKVIPPVTNPESKHLSDVL 975
            +  +  K +AD VEALIGA  ++ G   A      F+  + L  +   T   S       
Sbjct: 1036 KRQVSSKVLADVVEALIGAAYMDGGHAAAQACIRRFLPEINLHSLDTRTLSRSVAPEGAR 1095

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                D+ +  I+Y F+++S L++A+TH S   +  T  YQRLEFLGDA+LD +I   ++ 
Sbjct: 1096 QTIHDRLKRHISYTFENESLLVEALTHPSCDYDASTQSYQRLEFLGDAVLDMIIVSAIFN 1155

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGF---HHFFKHLSPGLHEVIQ--------R 1084
                   G +T ++ ALVN  + A L +           + +S    EVI         R
Sbjct: 1156 HPVQMPQGHMTKIKHALVNANLLAFLCMEFAIPEERASVEQISTLQFEVISNEELVELWR 1215

Query: 1085 FVKMQA-----ENDFTLNQEYYLMEGECDEAED-----------IEVPKALGDLFESVAG 1128
            F++ +        D +L +   L +      +            +   K   D+ ES+ G
Sbjct: 1216 FMRYRGLDLNNARDASLARHRALRDEILHSLQHDPHYPWQALSRLSADKFFSDIMESILG 1275

Query: 1129 AIYLDSGMSL 1138
            AI++DSG  L
Sbjct: 1276 AIFVDSGGDL 1285



 Score = 46.6 bits (109), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 26/71 (36%), Positives = 36/71 (50%), Gaps = 1/71 (1%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GDS LK++++  L+  +PN HEG LS  R + V N  L K          +I  
Sbjct: 955  QRYEFLGDSILKFSVSCQLFFKHPNWHEGYLSEGRDEIVQNPRLTKAALDTGLDAFVITK 1014

Query: 842  KFEPRDNWLPP 852
             F PR  W  P
Sbjct: 1015 MFTPR-KWSAP 1024


>gi|260828679|ref|XP_002609290.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
 gi|229294646|gb|EEN65300.1| hypothetical protein BRAFLDRAFT_86799 [Branchiostoma floridae]
          Length = 1490

 Score = 79.7 bits (195), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 86/313 (27%), Positives = 134/313 (42%), Gaps = 64/313 (20%)

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLL---DGFDKFE 983
            ++A+C+EALIGA  ++             GL+        E+K L   LL   +   +FE
Sbjct: 1164 AMANCLEALIGAMYMQ------------QGLE--------ETKKLFCRLLFSDERLTEFE 1203

Query: 984  ESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLITRHLYEDERAHSP 1042
                  FK    L +A TH +   N LT  + QRLEFLGD+++  + + +LY+    H  
Sbjct: 1204 SRCGMEFKHVRLLARAFTHRTVGFNNLTLGHNQRLEFLGDSVMQMVSSEYLYKHFPDHHE 1263

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G L+ LRS+LVNN   A ++  LG                               +EY +
Sbjct: 1264 GHLSLLRSSLVNNRTQALVSQDLGM------------------------------EEYII 1293

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK--VYYEIMKSEIERLSVSV 1160
               +  + +     K L DL E+  GA+Y+D G+    V+    ++  ++  I     + 
Sbjct: 1294 SSDKARQGKLSLRQKTLADLMEAFMGALYVDQGLEYVCVFMNVCFFPRLREFIMNQEWND 1353

Query: 1161 PKSPIRE-LLELEPENARFSKP-----EKLADGRRVRVTVEVFGKGSYKGIGRNYCI--A 1212
            PKS +++  L L  E      P     +K       + TV V+ KG   G G    I  A
Sbjct: 1354 PKSQLQQCCLTLRTEGKEPDIPFYKILDKAGPSHARKYTVAVYFKGERIGTGVGSSIQQA 1413

Query: 1213 KCTAAKCALKHLK 1225
            +  AA+ ALK+ K
Sbjct: 1414 EMAAARDALKNYK 1426



 Score = 45.4 bits (106), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 44/180 (24%), Positives = 78/180 (43%), Gaps = 35/180 (19%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNT--LTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            D+    ++ R K  + L+  M+   +   T  L +  +RLEFLGDA++++L + HLY   
Sbjct: 1054 DRRIHHVHTRKKGINTLINIMSRMGHDEETPSLINHNERLEFLGDAVVEFLTSSHLYFMF 1113

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
                 G L   R+A+V N   A LA +L                                
Sbjct: 1114 PDLEEGGLATYRTAIVQNQHLAVLAKKLRL------------------------------ 1143

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
             E+ L     D   + ++  A+ +  E++ GA+Y+  G  L+   K++  ++ S+ ERL+
Sbjct: 1144 DEFMLYAHGPDLCRESDLRHAMANCLEALIGAMYMQQG--LEETKKLFCRLLFSD-ERLT 1200



 Score = 40.0 bits (92), Expect = 8.4,   Method: Compositional matrix adjust.
 Identities = 23/69 (33%), Positives = 38/69 (55%), Gaps = 4/69 (5%)

Query: 771  PDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
            P L NH     +RLE +GD+ +++  +  LY  +P++ EG L+  R+  V N +L  L K
Sbjct: 1084 PSLINHN----ERLEFLGDAVVEFLTSSHLYFMFPDLEEGGLATYRTAIVQNQHLAVLAK 1139

Query: 831  QKVFGESMI 839
            +    E M+
Sbjct: 1140 KLRLDEFML 1148


>gi|406929771|gb|EKD65281.1| hypothetical protein ACD_50C00142G0004 [uncultured bacterium]
          Length = 220

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 70/246 (28%), Positives = 117/246 (47%), Gaps = 39/246 (15%)

Query: 989  RFKDKSYLLQAMTHASYFLNTL---TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
            +F++     QA TH SY LN +   T   +RLEFLGD+IL ++++  L+   +  + G+L
Sbjct: 6    KFRNAKLFQQAFTHRSY-LNEVKEKTPSNERLEFLGDSILSFIVSTSLFNRYKEFNEGSL 64

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            T+LRS LVN    + +A  L F                                  L +G
Sbjct: 65   TNLRSLLVNTKTLSKIAQELNFGDLL-----------------------------MLSKG 95

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKSEIERLSVSVPKS 1163
            E +E++  + P  L + FE+  GA+++D G+  S   +  V    +   I++ ++  PKS
Sbjct: 96   E-EESKGRQNPTLLANCFEAYVGALFIDQGIEESSKFINSVLLSKVDEIIQKETLKDPKS 154

Query: 1164 PIRELLELEPENARFSK-PEKLADGRRVRVTVEVF-GKGSY-KGIGRNYCIAKCTAAKCA 1220
             ++E+++ + + +   K  E+         TV  F G+    KG GR+  IA+  AAK A
Sbjct: 155  ILQEIVQAKKQKSPIYKVVEESGPAHDKLFTVGAFVGENMVGKGTGRSKQIAEENAAKVA 214

Query: 1221 LKHLKS 1226
            L  L+S
Sbjct: 215  LSKLQS 220



 Score = 47.4 bits (111), Expect = 0.049,   Method: Compositional matrix adjust.
 Identities = 24/66 (36%), Positives = 41/66 (62%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838
           PS +RLE +GDS L + ++  L+  Y   +EG L++LRS  V+   L K+ ++  FG+ +
Sbjct: 31  PSNERLEFLGDSILSFIVSTSLFNRYKEFNEGSLTNLRSLLVNTKTLSKIAQELNFGDLL 90

Query: 839 IATKFE 844
           + +K E
Sbjct: 91  MLSKGE 96


>gi|295670335|ref|XP_002795715.1| RNase3 domain-containing protein [Paracoccidioides sp. 'lutzii' Pb01]
 gi|226284800|gb|EEH40366.1| RNase3 domain-containing protein [Paracoccidioides sp. 'lutzii' Pb01]
          Length = 1346

 Score = 79.3 bits (194), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 89/328 (27%), Positives = 129/328 (39%), Gaps = 69/328 (21%)

Query: 925  DKSIADCVEALIGAYLIECGP--------RGALLFM-----------SWLGLKVIPPVTN 965
            DKSIAD  EALIGA L+  G         +    F+           S++GL  +P    
Sbjct: 1024 DKSIADICEALIGASLLSGGRVHRFDTAVKAVTAFVNSENHQVSDWQSYVGLYSLPRYQI 1083

Query: 966  PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAI 1024
             E+    D  LD   +  + + YRFK    L  A THASY  + +   CYQRLEFLGD++
Sbjct: 1084 TEA---DDTQLDLAQQIGDRLGYRFKYPRLLSSAFTHASYPTVWSKVPCYQRLEFLGDSL 1140

Query: 1025 LDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR 1084
            LD +   HLY       P  LT+ +       +F++     G+    + L   +H+    
Sbjct: 1141 LDMVCVEHLYHKYPDRDPQWLTEHK-------VFSNHLKMRGWKLKLQRLKASIHQ---- 1189

Query: 1085 FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
                      T  Q                 P  L ++ E+  GAI++DS  S + V   
Sbjct: 1190 ----------TFGQR----------------PVTLRNMLEAYIGAIFVDSNFSFEVVEDF 1223

Query: 1145 YYEIMKSEIERLSVS---VPKSPIRELLELEPENARFSKPE-KLADGRRVRVTVEVFGKG 1200
            + +  K   E +S+      K P    L   P  A     E    D    RV   V    
Sbjct: 1224 FQQYPKKYFEDISIYDTFANKHPTACTL---PRTAFMPAGEVDFVDAAECRVFAAVIIHD 1280

Query: 1201 SY--KGIGRNYCIAKCTAAKCALKHLKS 1226
             +  +GI  +   AK  A++ AL  L+ 
Sbjct: 1281 EFVAEGIASSAGYAKVKASENALAKLEG 1308



 Score = 59.7 bits (143), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 100/415 (24%), Positives = 165/415 (39%), Gaps = 70/415 (16%)

Query: 40  FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINL 99
           F C + LP  SP+ R +TG     KL A + AA E C +L +   LD+  +    + + L
Sbjct: 550 FVCEVVLPEKSPV-RGLTGRPAVAKLSAKQSAAFETCLILRKNGLLDDYFLSKYHKRLPL 608

Query: 100 YENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIP 159
             N +  + K+ +   Y    K + +   R             TPC +YA  + L     
Sbjct: 609 MRNAKLAI-KSKKTNQYGMMVKPKLWEKSRGM-----------TPCEVYATVLTL----- 651

Query: 160 DEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIF----TRCGEVEVSIELIDKNVVL 215
              + + R++H P      L +LT + +PK   FP++      C  V + +      V  
Sbjct: 652 -RPSAKLRRVHQP------LVLLTRESLPKFPVFPLYIETDIECDVVSIPLR-ASMQVSQ 703

Query: 216 SEENLSNTL---IFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFM 272
           SE +L  T    IF D LF KV   +  +M +        Y  V   S+  Q+ IDWK +
Sbjct: 704 SELDLFTTFTLRIFQD-LFHKVYDHQPAMMPYWLAPISLEYGNVLEDSNLRQL-IDWKII 761

Query: 273 TLISEHHNDV-IQDIPEKERENF-VFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHP 330
             + E+       D+P    EN  +FD+   R       YR       ++ +E+  N+ P
Sbjct: 762 QYVQENPEICWTSDMPRSSLENICMFDKWDGR-------YR-------YFTSELELNLRP 807

Query: 331 RSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390
            S  P  T   ++  +   L + L   +  QP++  +    R N L       KG+  A 
Sbjct: 808 -SDPPPPTMAKRSLYKKSRLNF-LGTCDWNQPVVRAELVRLRRNLLDRTTEQEKGVETA- 864

Query: 391 TSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
                             + PE   I   PA +   + + P+++ R+ + L+A E
Sbjct: 865 ----------------YYICPEPLRISALPAPVAVFAFTFPAMISRIESYLIALE 903


>gi|429124459|ref|ZP_19184991.1| ribonuclease III [Brachyspira hampsonii 30446]
 gi|426279698|gb|EKV56719.1| ribonuclease III [Brachyspira hampsonii 30446]
          Length = 251

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 73/261 (27%), Positives = 122/261 (46%), Gaps = 49/261 (18%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAH 1040
            + +INY F++K+YLL+A+TH +Y   +       QRLEFLGD++L  +I+ +L++   + 
Sbjct: 11   QSAINYEFRNKAYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLVISDYLFKKYNSS 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G L+ ++S+LV+    A ++  L    F                              
Sbjct: 71   KEGLLSKVKSSLVSQKSLADISKELKLGDF------------------------------ 100

Query: 1101 YLMEGECDEAEDIEV-PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS-V 1158
             L+ G  +EA         L DLFE++ GAIYLDSG++       Y  +M+S  ERLS +
Sbjct: 101  -LLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGIT-----SAYKFVMRSYKERLSNL 154

Query: 1159 SVP------KSPIRELLELEPENARFSKPEKLADGRR---VRVTVEVFGKGSYKGIGRNY 1209
             +       K+  +EL++ + + +   K  +  D       +  V V  K    GIG++ 
Sbjct: 155  DIENFDKDYKTIFQELIQKKHKTSPIYKSCEFHDENNNDMFKAEVYVNDKTFALGIGKSK 214

Query: 1210 CIAKCTAAKCALKHLKSAKPA 1230
              A+  AAK AL  ++  + A
Sbjct: 215  KEAETNAAKKALDKIEYVRSA 235


>gi|302687578|ref|XP_003033469.1| hypothetical protein SCHCODRAFT_37756 [Schizophyllum commune H4-8]
 gi|300107163|gb|EFI98566.1| hypothetical protein SCHCODRAFT_37756, partial [Schizophyllum commune
            H4-8]
          Length = 1343

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 74/253 (29%), Positives = 113/253 (44%), Gaps = 58/253 (22%)

Query: 928  IADCVEALIGAYLIECG---PRGALLFMSWLGLKVIPPVTNPESKHLSDVL-----LDGF 979
            +AD +E+LIGA  +  G    R    F   LGLK      +  S  +S +L     LD +
Sbjct: 1070 LADVIESLIGAAYVHGGLSLGRACAQFFD-LGLK-----WDTTSARISTILSRTVTLDQY 1123

Query: 980  DK----FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
                   E  + Y F+ K+ L++A+THASY     T  Y RLEFLGDA+LD  +T +++ 
Sbjct: 1124 PAELQYVERMLGYTFERKALLIEALTHASYQEPLPTPSYGRLEFLGDAVLDMAVTPYIFA 1183

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGF---HHFFKHLSPGLHEVIQRFVKMQAEN 1092
             ++ +SPG +   RSA VN    A + +R       H  +  +P         V+M  E+
Sbjct: 1184 SKKNYSPGHIHLRRSAAVNMHFLAFVCLRAKVAVDKHMPRPTAPDWR------VQMATES 1237

Query: 1093 -DFTLNQ------------------EYYLMEGECDEAED------------IEVPKALGD 1121
             D  L Q                   +  +E E  EA +            ++ PK   D
Sbjct: 1238 QDIYLWQCMLHSSSTVIDDQNNTFARFRRLEKEISEALETGDIFPWAALTRMQAPKFFSD 1297

Query: 1122 LFESVAGAIYLDS 1134
            + ES+ GA++LD+
Sbjct: 1298 VVESLIGAVFLDA 1310



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 23/51 (45%), Positives = 33/51 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
            +RLET+GD+ LKY ++I LY  YP  HEG L+  +   VSN  L K+  ++
Sbjct: 975  QRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVRLAKISVRR 1025



 Score = 42.4 bits (98), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 59/137 (43%), Gaps = 13/137 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLE +GD +L YL++  LY +      G L   +   V+N+  A ++VR    H F  
Sbjct: 974  YQRLETMGDTVLKYLVSIQLYAEYPLWHEGYLAKQKDHTVSNVRLAKISVR---RHIF-- 1028

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK--ALGDLFESVAGAIY 1131
                  + I R      +     N +            ++ + K   L D+ ES+ GA Y
Sbjct: 1029 ------QWIIREKNKPKKKKKKDNNQLSTKGTVLKITSELLLTKLSVLADVIESLIGAAY 1082

Query: 1132 LDSGMSLDTVWKVYYEI 1148
            +  G+SL      ++++
Sbjct: 1083 VHGGLSLGRACAQFFDL 1099


>gi|297794785|ref|XP_002865277.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297311112|gb|EFH41536.1| hypothetical protein ARALYDRAFT_917014 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 786

 Score = 79.0 bits (193), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 53/172 (30%), Positives = 86/172 (50%), Gaps = 24/172 (13%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +D  +  E+ +NY FK+K+ L +A+T        L+  ++RLEFLGD++L+  +  +++ 
Sbjct: 1    MDSMETVEKILNYSFKNKTLLKEAIT--------LSPRFKRLEFLGDSVLEVALANYIHH 52

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF---KHLSPGLHEVIQRFVKMQAEN 1092
                     L DLR+A VNN  FA   V+   + F    K  SP   E I+ F +  ++ 
Sbjct: 53   AYPNLKLQELCDLRTANVNNEKFARATVKHNLYQFIIGEKSSSPS--EKIKEFSEAVSKE 110

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
            D  +                +E PK LGD+ ES+AGA+Y+D    +   W+V
Sbjct: 111  DVPVPY-----------GGLVEAPKVLGDIVESIAGAVYIDVDFDVQRFWEV 151



 Score = 61.6 bits (148), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 63/261 (24%), Positives = 111/261 (42%), Gaps = 26/261 (9%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D     E+ +NY F +K+ L +A+   S         +Q+L F+G A L   IT H+Y  
Sbjct: 470  DSVKAVEKILNYVFTNKNLLKEALRQTSSL-------FQKLRFVGRAALVLAITNHIYLR 522

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                 P  L  L+     N   A +AV+   H FF        + I+ F K+  + D  +
Sbjct: 523  YPNFEPRELELLQRGNTCNKTLARVAVKHNIHQFFIGQFKS-EKKIEAFSKVVGKEDDPV 581

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
                   +G  +   ++     L DL ESVAGA+Y+D    +  +W+ +  + +      
Sbjct: 582  PS-----DGRSERTTNV-----LSDLVESVAGAVYIDMNFDIKRLWESFRGLFEPLYTLD 631

Query: 1157 SVSVPKSPIRELLELEPENAR---FSKPEKLADGRRVRVTVE--VFGKGSYKGIGRNYCI 1211
             + +   PI  L  L  ++ +   F   EK ++  +  V ++  +   G  K    +   
Sbjct: 632  DLRLRPQPIHTLSCLGDKDGKHFDFRYEEKGSNRYKAHVYLDDKLIASGKKKNSRDD--- 688

Query: 1212 AKCTAAKCALKHLKSAKPADV 1232
            AK +AA  A++ L  + P ++
Sbjct: 689  AKMSAAMEAVRKLSESMPVEI 709


>gi|121807816|sp|Q2VF18.1|DCL2_CRYPA RecName: Full=Dicer-like protein 2; Includes: RecName:
            Full=Endoribonuclease DCL-2; Includes: RecName:
            Full=ATP-dependent helicase DCL-2
 gi|77632776|gb|ABB00357.1| dicer-like protein 2 [Cryphonectria parasitica]
          Length = 1451

 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 72/272 (26%), Positives = 116/272 (42%), Gaps = 65/272 (23%)

Query: 926  KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPES-KHLSDVLLDG------ 978
            K++AD VEALIG   ++ G   AL       +++  P + P     + D+L         
Sbjct: 1093 KTLADVVEALIGVSFVDGGLPKALEC-----IRLFIPESQPRPFSEVRDILFGAAEPKGM 1147

Query: 979  -----FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
                     E+ I Y F +K+ L++A+TH SY ++    CY RLEF+GDAILDY+I   +
Sbjct: 1148 KLPADLQLLEQLIEYSFCEKALLVEAVTHPSYNVSGTVACYDRLEFIGDAILDYIIVEEV 1207

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAV-----RLGFH----------------HFFK 1072
            +  E A     +  LR+ALVN  I   L +     ++GF                     
Sbjct: 1208 FALEPALENWQMHLLRTALVNADILGFLIMEWSYKQMGFEVCRANEGDSDSKSSGDSTSD 1267

Query: 1073 HLSPGLHEV-----IQRFVKMQAENDFTLNQEYYLMEGECDEAED--------------- 1112
              SP L +      +  F++ Q+  + T+ +E  + +   +E  D               
Sbjct: 1268 KASPRLEQTEVPIPLWSFMR-QSSAELTMERE--ITKARFEELRDPILEAMRSGTHYPWA 1324

Query: 1113 ----IEVPKALGDLFESVAGAIYLDSGMSLDT 1140
                +   K   D FE++ GAI++D+G   D 
Sbjct: 1325 LFARLHAQKFYSDFFEALVGAIWVDAGPGFDA 1356


>gi|160892686|ref|ZP_02073476.1| hypothetical protein CLOL250_00216 [Clostridium sp. L2-50]
 gi|156865727|gb|EDO59158.1| ribonuclease III [Clostridium sp. L2-50]
          Length = 230

 Score = 79.0 bits (193), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 74/254 (29%), Positives = 120/254 (47%), Gaps = 40/254 (15%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYF----LNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            F   E+ I Y F+D   L+ A+TH SY     +N + + Y+R EFLGDAIL+++++ +LY
Sbjct: 6    FHNIEDIIGYTFRDLDLLVTALTHKSYANERKINKV-ESYERSEFLGDAILEFVVSEYLY 64

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            ++   +  G LT LR++LV     + ++  L F H               +V +    D 
Sbjct: 65   QNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGH---------------YVLLSKGEDL 109

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
            T  +                    + DLFE+V GAIYLD G  LD   K  +  +  ++E
Sbjct: 110  TGGR---------------NRNSIMCDLFEAVLGAIYLDGG--LDEAKKFVHRFLLDDVE 152

Query: 1155 RLSVSV-PKSPIRELLELEPENARFS-KPEKLADGRRVRVT-VEVFGKGSYKGIGRNYCI 1211
              S+    KS ++EL + E +   ++   EK  D  +  V+ V + G+    G G +   
Sbjct: 153  THSLFYDAKSTLQELAQKEEKTLTYALLEEKGPDHNKSYVSEVCINGEHVATGEGASRKA 212

Query: 1212 AKCTAAKCALKHLK 1225
            ++ TAA  AL  +K
Sbjct: 213  SEQTAAYNALLQIK 226



 Score = 46.6 bits (109), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 40/65 (61%)

Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           S +R E +GD+ L++ ++ +LY  YP   EGKL+ LR+  V  + L ++ K+  FG  ++
Sbjct: 43  SYERSEFLGDAILEFVVSEYLYQNYPEYPEGKLTKLRASLVCEFTLSQISKELKFGHYVL 102

Query: 840 ATKFE 844
            +K E
Sbjct: 103 LSKGE 107


>gi|302826370|ref|XP_002994673.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
 gi|300137177|gb|EFJ04260.1| hypothetical protein SELMODRAFT_432577 [Selaginella moellendorffii]
          Length = 176

 Score = 79.0 bits (193), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 51/133 (38%), Positives = 72/133 (54%), Gaps = 20/133 (15%)

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV---IQRFVKMQAENDFTLNQ 1098
            PGTLTDLRSA VNN  FA L VR G H   +HL  GL E+   I++FV+   E       
Sbjct: 3    PGTLTDLRSAAVNNKWFARLVVRHGLH---QHLQHGLVELDCEIRKFVQNVKEKP----- 54

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                 +  C   ED+  PK LGDL ES+ GAI++D+   L+ +W+V   ++   +   ++
Sbjct: 55   -----DASC--FEDLSAPKVLGDLLESITGAIFVDTNFDLERLWRVVLPLLSPLVTPATL 107

Query: 1159 SVPKSPIRELLEL 1171
                 P+  L+EL
Sbjct: 108  RF--HPVHILMEL 118


>gi|403349032|gb|EJY73964.1| Dicer-related RNase III protein Dcl1p [Oxytricha trifallax]
          Length = 1429

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 107/448 (23%), Positives = 181/448 (40%), Gaps = 97/448 (21%)

Query: 784  LETIGDSFLKYAITIFLYCTY---PNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            LET GD+ LK    +  Y  +   PN  E K+  +++  ++N    ++GK+   G     
Sbjct: 711  LETYGDTILKLGACMLSYYQFYDDPNSDESKIDQMKNWFITNLYFLRVGKR--LGLQKYI 768

Query: 841  TKFEP-RDNWLPP--------------GYFVPKYLETALIEAGFPASLWNCLSLPNLKEL 885
               +P    W PP              G  +   +E+ L       ++   L L +  ++
Sbjct: 769  RNVDPDHKTWNPPFSEQVQGRENLTCTGKNIADCVESLLGAHFMTHNVRRTLELISNMKI 828

Query: 886  SPEK---VLEIIKQK------CVDLD---CTVDMNVQSVVPYNLVTQHSIPDKSIADCVE 933
             P K   +L+    K      C DLD     ++ +  + +       H++ D+ I D + 
Sbjct: 829  MPLKQAGILDFFPDKDLTFVLCEDLDEYQFILETDRVADIYQKYFKVHNL-DQEIQDRIR 887

Query: 934  ALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPE-------SKHLSDVLLDGFDKFEESI 986
            ++I     +   RG    M   G      + +PE          +  +L+      E+ +
Sbjct: 888  SVI----CDSPDRG----MRGQGAAFQEVMNDPEINFREMEPSEIEKLLIPYLLPVEKIL 939

Query: 987  NYRFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLITRHL------------ 1033
            NY FK+K +LL+A TH S+     L+ CY++LE LGD+ILDYL   +L            
Sbjct: 940  NYEFKNKRFLLEAFTHRSFRDAYGLSFCYEKLEVLGDSILDYLANSNLIKFTILEKYNIK 999

Query: 1034 ------YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF-----KHLSP------ 1076
                  Y       P      +S L  N   A L    G   +      + ++P      
Sbjct: 1000 ERMAQQYITTEDFQPFDAHQAKSLLTKNDFLAKLVCLFGLQEYILFYKPRQMTPQELKDQ 1059

Query: 1077 -------GLHEV---IQRFVKMQAENDFTLNQEY-----YLMEGECDEAEDIEVPKALGD 1121
                   G  E+    ++  ++Q E D     +Y     +L+ G+  E E  E PK LGD
Sbjct: 1060 VIKESTDGKFEMWKYQKKLKELQNEKDANKYLQYSFKKNFLINGK--ELELYEAPKLLGD 1117

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
            +FES+ GAI+ D G  +++V +VY  ++
Sbjct: 1118 IFESLIGAIFRDGG--IESVIEVYQHLL 1143


>gi|340378479|ref|XP_003387755.1| PREDICTED: ribonuclease 3-like [Amphimedon queenslandica]
          Length = 349

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 35/159 (22%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            F+K EESI  RF +   L +A TH SY   + L   YQR+EFLGDAIL +L + ++Y+  
Sbjct: 120  FNKLEESIGVRFTNIRLLARAFTHPSYGCTDLLIGDYQRMEFLGDAILQFLTSDYVYDTF 179

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
              H  G L+  R+A+V+N   A ++V LGF    +HL  G  + +  F            
Sbjct: 180  PLHHEGHLSTFRTAIVHNKQLAEVSVELGFP---QHLLLGKDQTVTNF------------ 224

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                               K   DL ES   A+YLD GM
Sbjct: 225  -------------------KVHADLIESFITALYLDKGM 244



 Score = 43.5 bits (101), Expect = 0.81,   Method: Compositional matrix adjust.
 Identities = 23/95 (24%), Positives = 47/95 (49%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +R+E +GD+ L++  + ++Y T+P  HEG LS  R+  V N  L ++  +  F + ++  
Sbjct: 157 QRMEFLGDAILQFLTSDYVYDTFPLHHEGHLSTFRTAIVHNKQLAEVSVELGFPQHLLLG 216

Query: 842 KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNC 876
           K +   N+      +  ++    ++ G    L  C
Sbjct: 217 KDQTVTNFKVHADLIESFITALYLDKGMEHVLMFC 251


>gi|327349134|gb|EGE77991.1| dicer [Ajellomyces dermatitidis ATCC 18188]
          Length = 1482

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 110/267 (41%), Gaps = 53/267 (19%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            + Q  +  K++AD VEAL+GA  IE G           L  + W+     I  + N   +
Sbjct: 1082 IPQREMTTKTLADVVEALLGAATIEGGETKTEKCLEIFLPEIRWMPFDDRINALYNSVPE 1141

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               ++    F + E  + Y F  K +L+QA TH S   +T T  YQRLEF+GDAILD++I
Sbjct: 1142 AYENIRTSWFQEIESLLGYSFNKKVFLVQAFTHPSNPGST-TSSYQRLEFVGDAILDHII 1200

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
              HL+   R      +  +R+AL N    A L + +              EV++   K  
Sbjct: 1201 VHHLFNSSRNLPHFDMHLMRTALANADFLAFLCIGMSTEQ-------ARSEVVES-SKKN 1252

Query: 1090 AENDFTLNQEY---YLMEG-------------------ECDEAEDIE------------- 1114
                 T  + +   Y+  G                   + D +E +E             
Sbjct: 1253 TVTSLTTRKVFLWQYMRHGTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRL 1312

Query: 1115 -VPKALGDLFESVAGAIYLDSGMSLDT 1140
               K   DL ESV GAI++DS  SLD 
Sbjct: 1313 RAQKFFSDLIESVLGAIFIDSHGSLDA 1339


>gi|239610437|gb|EEQ87424.1| dicer-like protein 2 [Ajellomyces dermatitidis ER-3]
          Length = 1509

 Score = 78.6 bits (192), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 110/267 (41%), Gaps = 53/267 (19%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            + Q  +  K++AD VEAL+GA  IE G           L  + W+     I  + N   +
Sbjct: 1108 IPQREMTTKTLADVVEALLGAATIEGGETKTEKCLEIFLPEIRWMPFDDRINALYNSVPE 1167

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               ++    F + E  + Y F  K +L+QA TH S   +T T  YQRLEF+GDAILD++I
Sbjct: 1168 AYENIRTSWFQEIESLLGYSFNKKVFLVQAFTHPSNPGST-TSSYQRLEFVGDAILDHII 1226

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
              HL+   R      +  +R+AL N    A L + +              EV++   K  
Sbjct: 1227 VHHLFNSSRNLPHFDMHLMRTALANADFLAFLCIGMSTEQ-------ARSEVVES-SKKN 1278

Query: 1090 AENDFTLNQEY---YLMEG-------------------ECDEAEDIE------------- 1114
                 T  + +   Y+  G                   + D +E +E             
Sbjct: 1279 TVTSLTTRKVFLWQYMRHGTSWELAAAQQQTADQYQKLQADISEALEKSNTYPWTLLSRL 1338

Query: 1115 -VPKALGDLFESVAGAIYLDSGMSLDT 1140
               K   DL ESV GAI++DS  SLD 
Sbjct: 1339 RAQKFFSDLIESVLGAIFIDSHGSLDA 1365


>gi|261195592|ref|XP_002624200.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
 gi|239588072|gb|EEQ70715.1| dicer-like protein 2 [Ajellomyces dermatitidis SLH14081]
          Length = 1509

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 75/267 (28%), Positives = 110/267 (41%), Gaps = 53/267 (19%)

Query: 918  VTQHSIPDKSIADCVEALIGAYLIECGPRGA-------LLFMSWLGLK-VIPPVTNPESK 969
            + Q  +  K++AD VEAL+GA  IE G           L  + W+     I  + N   +
Sbjct: 1108 IPQREMTTKTLADVVEALLGAATIEGGETKTEKCLEIFLPEIRWMPFDDRINALYNSVPE 1167

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLI 1029
               ++    F + E  + Y F  K +L+QA TH S   +T T  YQRLEF+GDAILD++I
Sbjct: 1168 AYENIRTSWFQEIESLLGYSFNKKVFLVQAFTHPSNPGST-TSSYQRLEFVGDAILDHII 1226

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
              HL+   R      +  +R+AL N    A L + +              EV++   K  
Sbjct: 1227 VHHLFNSSRNLPHFDMHLMRTALANADFLAFLCIGMSTEQ-------ARSEVVES-SKKN 1278

Query: 1090 AENDFTLNQEY---YLMEG-------------------ECDEAEDIE------------- 1114
                 T  + +   Y+  G                   + D +E +E             
Sbjct: 1279 TVTSLTTRKVFLWQYMRHGTSWELAAAQQQTANQYQKLQADISEALEKSNTYPWTLLSRL 1338

Query: 1115 -VPKALGDLFESVAGAIYLDSGMSLDT 1140
               K   DL ESV GAI++DS  SLD 
Sbjct: 1339 RAQKFFSDLIESVLGAIFIDSHGSLDA 1365


>gi|83774779|dbj|BAE64902.1| unnamed protein product [Aspergillus oryzae RIB40]
          Length = 1256

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 151/397 (38%), Gaps = 101/397 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + +  IGD+ +K+ IT  L+  +   HEG L+ ++   VS+  L        FG  +I T
Sbjct: 866  RSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYLITT 925

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F  +  W P       ++ T L ++G                  P +            
Sbjct: 926  RFNGK-RWRP------SFVSTTLSKSG------------------PTR------------ 948

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL--------FMS 953
                              +  +   ++AD V+AL GA  ++ G   A +          S
Sbjct: 949  ------------------RRYVGAATVADMVKALAGAAFLDNGLDQAFICAAAMIPKIKS 990

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W  + +       + P     +  ++D     E  + Y F DKS  +++MTH S      
Sbjct: 991  WTTISLYDGTYSKSRPSKSLGASTIID----LEALLGYTFSDKSLAIESMTHPSCVGLYG 1046

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------- 1063
            T  Y+RL FLG  I++ ++ R+L+  +   S   L  L+SA+ NN+  A L +       
Sbjct: 1047 TASYRRLSFLGAGIIELVVVRYLHRQKSFTSSKRLQSLKSAVTNNMFLAFLCLTFHWEKQ 1106

Query: 1064 -------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLME 1104
                               R+  +HF +  S  L + +   V+        + ++  L E
Sbjct: 1107 HDIIEVDSMGVPSVIQTRGRVALYHFLRSQSDSLSDKVSSLVEDLTSQLHVIKRD--LWE 1164

Query: 1105 GECDEAEDIEVPKAL---GDLFESVAGAIYLDSGMSL 1138
                    + V + L    D+ +SV GAIY+DS  SL
Sbjct: 1165 NGIYPWARLSVFRGLKVFSDIVQSVFGAIYIDSLASL 1201


>gi|373456823|ref|ZP_09548590.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
 gi|371718487|gb|EHO40258.1| Ribonuclease 3 [Caldithrix abyssi DSM 13497]
          Length = 264

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 75/254 (29%), Positives = 116/254 (45%), Gaps = 42/254 (16%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNT---LTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + E  I+Y+FKDK  LL+A  H SY   T     +  +RLEFLGDA+LD +I  HL+ + 
Sbjct: 24   EIERKIDYQFKDKILLLKAFKHRSYLNMTHESALESNERLEFLGDAVLDLIIAEHLFHNF 83

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
               + G L+  RS LV+  + A +   +G                               
Sbjct: 84   PNKNEGELSKKRSVLVSRQVLAQITEEIGL------------------------------ 113

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLS 1157
             EY L++   ++    +    L +LFESV GAIYLD G++    +  ++ + K E + L 
Sbjct: 114  GEYLLLDKGEEKTGGRKRLNNLANLFESVLGAIYLDGGLTAARNFVNHFILRKRE-DLLK 172

Query: 1158 VSVPKSPIRELLELEPENARFSKP------EKLAD-GRRVRVTVEVFGKGSYKGIGRNYC 1210
            V    +   ELLE + ++  +  P      E   D  ++  V V V  +   KG+G +  
Sbjct: 173  VKRYHNYKSELLE-KAQSKGWGNPVYQIVHESGPDHNKQFVVRVNVNNRWLAKGVGSSKK 231

Query: 1211 IAKCTAAKCALKHL 1224
             A+  AA+ ALK L
Sbjct: 232  KAEQLAARNALKKL 245



 Score = 40.4 bits (93), Expect = 7.1,   Method: Composition-based stats.
 Identities = 24/67 (35%), Positives = 38/67 (56%)

Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           S +RLE +GD+ L   I   L+  +PN +EG+LS  RS  VS   L ++ ++   GE ++
Sbjct: 59  SNERLEFLGDAVLDLIIAEHLFHNFPNKNEGELSKKRSVLVSRQVLAQITEEIGLGEYLL 118

Query: 840 ATKFEPR 846
             K E +
Sbjct: 119 LDKGEEK 125


>gi|118474451|ref|YP_892860.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
 gi|261885507|ref|ZP_06009546.1| ribonuclease III [Campylobacter fetus subsp. venerealis str. Azul-94]
 gi|189043299|sp|A0RRM7.1|RNC_CAMFF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|118413677|gb|ABK82097.1| ribonuclease III [Campylobacter fetus subsp. fetus 82-40]
          Length = 223

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 62/205 (30%), Positives = 102/205 (49%), Gaps = 40/205 (19%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +D  ++ EE + Y+FK+K+ L +A+TH S   +++ +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MDKLNRLEEHLGYKFKNKTLLKEALTHKS-MKSSVNN--ERLEFLGDAVLDLIVGEYLFF 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLA--VRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
              +    G L+ LR+ALVN   FAS++  +RLG                          D
Sbjct: 58   KFKDTDEGNLSKLRAALVNEKSFASISSQIRLG--------------------------D 91

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
            F      YL   E D       P  + D  E++ GAIYL+SG  L+ V K++  +++S+ 
Sbjct: 92   F-----LYLSAAE-DNNNGRNKPSLVSDALEALMGAIYLESG--LEAVKKIFINLLESQY 143

Query: 1154 ERLSVSVPKSPIRELLELEPENARF 1178
              + +       +  L+ E   ARF
Sbjct: 144  NNIDLQSLGKDYKTTLQ-EITQARF 167


>gi|390358795|ref|XP_001185802.2| PREDICTED: ribonuclease 3-like, partial [Strongylocentrotus
            purpuratus]
          Length = 707

 Score = 78.2 bits (191), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 87/323 (26%), Positives = 142/323 (43%), Gaps = 57/323 (17%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-PVTNPES-KHL- 971
            ++A+C+EA++GA  +E G        G LLF        WL     P  V +PE+ +HL 
Sbjct: 352  AMANCLEAVMGAIYLEAGLDLCRKIFGKLLFEEEYLQTIWLNHPKDPLQVRSPETDRHLI 411

Query: 972  -SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT-DCYQRLEFLGDAILDYLI 1029
             +  +L     FE     RF     L +A T  +     LT    QRLEFLGD++L  ++
Sbjct: 412  KNSEVLQKLTVFEGDTGMRFTHIRLLARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVV 471

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + +LY+    H  G L+ LRS+LVNN   + +A  LG   +          +I+   + +
Sbjct: 472  SSYLYKHFPNHHEGHLSLLRSSLVNNKTQSIIAQDLGLVEY----------IIEPKTRSR 521

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW--KVYYE 1147
             EN+  +                    K + DL E++ GA+Y+D G+ + + +   V+Y 
Sbjct: 522  NENNIPM--------------------KIMADLVEALIGAMYVDHGLEVVSTFCSVVFYP 561

Query: 1148 IMKSEIERLSVSVPKSPIREL---LELEPE-----NARFSKPEKLADGRRVRVTVEVFGK 1199
             +K  I+    +  KS +++    L +E +     N +        + R+  V V    K
Sbjct: 562  RLKDFIQTQHWNDAKSQLQQCCLTLRVEGQEPDVPNYKVIGQSGPTNSRQYSVAVYFKSK 621

Query: 1200 GSYKGIGRNYCIAKCTAAKCALK 1222
                G   N   A+  AAK AL+
Sbjct: 622  RMSTGTASNIRDAEMEAAKNALR 644



 Score = 47.8 bits (112), Expect = 0.043,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 775 NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
           N T  S +RLE +GDS L+  ++ +LY  +PN HEG LS LRS  V+N
Sbjct: 450 NLTMGSNQRLEFLGDSVLQLVVSSYLYKHFPNHHEGHLSLLRSSLVNN 497


>gi|223944141|gb|ACN26154.1| unknown [Zea mays]
 gi|414870637|tpg|DAA49194.1| TPA: hypothetical protein ZEAMMB73_470563 [Zea mays]
          Length = 206

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 41/99 (41%), Positives = 58/99 (58%), Gaps = 1/99 (1%)

Query: 983  EESINYRFKDKSYLLQAMTHAS-YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
            E  + Y F DKS +  A+TH S Y+ N   D Y+RLE+LGD +L  L++R ++   R   
Sbjct: 52   EALLGYCFIDKSLVELALTHGSFYWPNRPGDTYERLEYLGDGVLTCLMSREVFRTYRTLQ 111

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE 1080
            PG LT LR+A V+    A +AV  G H F +H +P L +
Sbjct: 112  PGPLTRLRAANVDTEKLARVAVHRGLHRFLRHKAPKLQD 150


>gi|406864416|gb|EKD17461.1| putative Dicer-like protein 1 [Marssonina brunnea f. sp.
            'multigermtubi' MB_m1]
          Length = 1827

 Score = 77.8 bits (190), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 71/247 (28%), Positives = 102/247 (41%), Gaps = 39/247 (15%)

Query: 919  TQHSIPDKSIADCVEALIGAYLI--------ECGPRGALLFMSWLGLKVI--------PP 962
            T H + DKSIAD  EALIGA L+        +   R     +S    +V           
Sbjct: 1451 TTHKLGDKSIADVCEALIGAALLTYHESKDMDAAVRAVTELVSSENHQVTCFADYYKLYK 1510

Query: 963  VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLG 1021
                +    +++  +   + E+   Y FK       A TH SY +       YQRLEFLG
Sbjct: 1511 KPKYQLAQATEMQRNLAAQLEQEHPYHFKYPRLARSAFTHPSYPYSYEHVPSYQRLEFLG 1570

Query: 1022 DAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081
            D++LD      LY       P  LT+ + A+V+N    +L V LGFH      + G  + 
Sbjct: 1571 DSLLDMACINFLYHAFPDKDPQWLTEHKMAMVSNQFLGALCVSLGFHRHLLLFNAGFQKQ 1630

Query: 1082 IQRFV------KMQAENDFT--------LNQEYYLMEGECDEAEDIEVPKALGDLFESVA 1127
            I  +V      + QAE D           N +Y+            + PK L D+ E+  
Sbjct: 1631 ISDYVTDITEARTQAEADAVRAGKSPQDCNPDYW--------TSVRQPPKCLPDVVEAYI 1682

Query: 1128 GAIYLDS 1134
            GAI++DS
Sbjct: 1683 GAIFVDS 1689



 Score = 50.1 bits (118), Expect = 0.008,   Method: Compositional matrix adjust.
 Identities = 103/462 (22%), Positives = 174/462 (37%), Gaps = 78/462 (16%)

Query: 4    AIFIVNRYCARLPSDIFTRLAP--IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKM 61
            ++ ++  +   LP    T L P  IIT+       +  F C   LP  SP + SV G   
Sbjct: 921  SLTVLANFVDSLPHAQDTNLQPEYIITVH------NRHFICETILPEGSPFRGSV-GRPC 973

Query: 62   PTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTK 121
             TK +A   AA E C  L + K LD  L+P   + +    N    V          DS K
Sbjct: 974  STKQVAKCSAAFETCLGLVKCKLLDEHLLPTFTKQLPAMRNALLAV----------DSKK 1023

Query: 122  RRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAI 181
            R  +  K   + ++        P   +A  + L  P         + +  P    Q L +
Sbjct: 1024 REAYEMKTKPTLWS----VGGVPEEFFATYLVLDNP---------KVLDRPS---QPLVL 1067

Query: 182  LTTKYIPKVCSFPI-FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
            LT   +P++ SF + F       V +  I +++  + E ++    F  YLF  V     +
Sbjct: 1068 LTRSRLPQLPSFYLHFGSNRHSPVEMVSIAQSIKATPEVIAQINTFTIYLFNDV-----F 1122

Query: 241  LMLFDPNCSENSYFIVPTVSDSE-------QIVIDWKFMTLISEHHNDVIQ--DIPEKER 291
              L++ + ++  YF+ P +S SE         +I W  +  + +H   VI+  D P   +
Sbjct: 1123 SKLYESDVAKMPYFLAPGISLSEVTANTDLSSLIAWDVLKAVEDH---VIKWADNPWDNK 1179

Query: 292  ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAE-------IMTNVHPRSMFPSRTNTYQTF 344
                  +  F+D  ++  Y    +     V         +  N  PR       N    +
Sbjct: 1180 SWQTEPDEFFKDKFIVDPYDGSRKLWTIGVTRDHSPLGPVPPNSAPRHGTRKNNNNIMEY 1239

Query: 345  E-EYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESL 403
                +S     +  +  Q +++ +  S R N L             T  EE        +
Sbjct: 1240 SCSLWSKARARRTFDPNQRVVEAEFISLRRNLLD---------EFDTPEEE--------I 1282

Query: 404  GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADE 445
             KK  ++ E   I P P S+   +   P+I++RL + L+A E
Sbjct: 1283 PKKCFVILEPLKISPIPTSVVAMAYVFPAIIHRLESYLIALE 1324


>gi|384915457|ref|ZP_10015677.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
 gi|384527143|emb|CCG91546.1| Ribonuclease 3 [Methylacidiphilum fumariolicum SolV]
          Length = 242

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/267 (28%), Positives = 113/267 (42%), Gaps = 50/267 (18%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDC---YQRLEFLGDAILDYLITRHLYEDER 1038
             EE + + F++   L +A+TH SYF+ ++      +QRLEFLGDA+L   IT  LYE   
Sbjct: 6    LEERLGHTFRNNQLLEEALTHPSYFVESMKTTGKDFQRLEFLGDAVLGLAITEKLYEIFP 65

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
            +   G LT LR+ LV+  + + L+  LG   +             R  K + +N      
Sbjct: 66   SFDEGKLTKLRAKLVSRKVLSPLSSSLGIGKYL------------RLGKGEEKN------ 107

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG------MSLDTVWKVYYEIMKSE 1152
                 +G          P  L +  ESV GA+YLD G              ++ E+ K  
Sbjct: 108  -----QGRTK-------PSNLANALESVIGALYLDGGWEKTKSFVFQLFSPLFLELHKDP 155

Query: 1153 IERLSVSVPKSPIRELLE---LEPENARFSKPEKLADGRRVRVTV----EVFGKGSYKGI 1205
               L     K  ++E L+   +E    R       A  +   V V    +V GKGS    
Sbjct: 156  SAFLEYENSKGLLQEFLQKKGMELPVYRIVMESGEAHNKWYEVEVLWKNQVLGKGS---- 211

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKPADV 1232
            G++   A+  AAK A + L S  P D+
Sbjct: 212  GKSKKEAELRAAKEAFEKLISQTPIDL 238



 Score = 44.7 bits (104), Expect = 0.33,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 44/88 (50%), Gaps = 4/88 (4%)

Query: 777 TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
           TG   +RLE +GD+ L  AIT  LY  +P+  EGKL+ LR+K VS   L  L      G+
Sbjct: 37  TGKDFQRLEFLGDAVLGLAITEKLYEIFPSFDEGKLTKLRAKLVSRKVLSPLSSSLGIGK 96

Query: 837 SMIATKFEPRDNWLPPGYFVPKYLETAL 864
            +   K E ++     G   P  L  AL
Sbjct: 97  YLRLGKGEEKNQ----GRTKPSNLANAL 120


>gi|452988240|gb|EME87995.1| hypothetical protein MYCFIDRAFT_104430, partial [Pseudocercospora
            fijiensis CIRAD86]
          Length = 1360

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 96/385 (24%), Positives = 145/385 (37%), Gaps = 93/385 (24%)

Query: 783  RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
            RLE +GD  LK+   + +   +    EG L+  R K V N  L K   Q    E +I   
Sbjct: 930  RLEYLGDQILKHCAEVQVMAQHLKRPEGSLTLQRDKIVRNSTLAKAALQAGLDEFIITKP 989

Query: 843  FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLD 902
            F     W PP +                                          K   LD
Sbjct: 990  FTGA-KWRPPSF-----------------------------------------SKTSGLD 1007

Query: 903  CTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECG-PRGALLFMSWLGLKVIP 961
            C                +  I  K++AD VE+L+GA  ++ G  +G       L  ++  
Sbjct: 1008 CG---------------KREISTKTLADVVESLVGAAYLDGGLAKGLQCIKILLPNEIWH 1052

Query: 962  PVTNPESKHLSDV----LLDGFDKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQR 1016
            P+ +  +  LSD+      DG    E  I + F+ K  L+QA+TH +  +   L+  Y+R
Sbjct: 1053 PLPHCFNLLLSDLGPAASHDGLSFLERMIGHEFEHKQLLMQAITHVTCPYKGQLS--YER 1110

Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS--------------LA 1062
            LEFLGD++LD +IT HL+  +R      L     ALVN                    +A
Sbjct: 1111 LEFLGDSVLDLVITPHLFAHKRLLRHWELHQAHEALVNKYFLGYCCMNYAIEQDENDIVA 1170

Query: 1063 VRLGFH---------HFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECD----E 1109
            V  G +         H +  L         R   + A+ D  + +    ++G  +    E
Sbjct: 1171 VADGSYRAMPKLRKVHLYDFLRADSQTAQMRRTAV-AKFDAMVPEIAERLQGGTEYPWPE 1229

Query: 1110 AEDIEVPKALGDLFESVAGAIYLDS 1134
               +  PK   D+ ESV GA+Y+DS
Sbjct: 1230 LVTLSPPKFFSDIIESVLGALYIDS 1254


>gi|317156821|ref|XP_001826035.2| hypothetical protein AOR_1_660054 [Aspergillus oryzae RIB40]
          Length = 939

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 151/397 (38%), Gaps = 101/397 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + +  IGD+ +K+ IT  L+  +   HEG L+ ++   VS+  L        FG  +I T
Sbjct: 549  RSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYLITT 608

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F  +  W P       ++ T L ++G                  P +            
Sbjct: 609  RFNGK-RWRP------SFVSTTLSKSG------------------PTR------------ 631

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL--------FMS 953
                              +  +   ++AD V+AL GA  ++ G   A +          S
Sbjct: 632  ------------------RRYVGAATVADMVKALAGAAFLDNGLDQAFICAAAMIPKIKS 673

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W  + +       + P     +  ++D     E  + Y F DKS  +++MTH S      
Sbjct: 674  WTTISLYDGTYSKSRPSKSLGASTIID----LEALLGYTFSDKSLAIESMTHPSCVGLYG 729

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------- 1063
            T  Y+RL FLG  I++ ++ R+L+  +   S   L  L+SA+ NN+  A L +       
Sbjct: 730  TASYRRLSFLGAGIIELVVVRYLHRQKSFTSSKRLQSLKSAVTNNMFLAFLCLTFHWEKQ 789

Query: 1064 -------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLME 1104
                               R+  +HF +  S  L + +   V+        + ++  L E
Sbjct: 790  HDIIEVDSMGVPSVIQTRGRVALYHFLRSQSDSLSDKVSSLVEDLTSQLHVIKRD--LWE 847

Query: 1105 GECDEAEDIEVPKAL---GDLFESVAGAIYLDSGMSL 1138
                    + V + L    D+ +SV GAIY+DS  SL
Sbjct: 848  NGIYPWARLSVFRGLKVFSDIVQSVFGAIYIDSLASL 884


>gi|238492895|ref|XP_002377684.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
 gi|220696178|gb|EED52520.1| conserved hypothetical protein [Aspergillus flavus NRRL3357]
          Length = 790

 Score = 77.8 bits (190), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 153/400 (38%), Gaps = 101/400 (25%)

Query: 779  PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838
            P  + +  IGD+ +K+ IT  L+  +   HEG L+ ++   VS+  L        FG  +
Sbjct: 397  PEFRSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYL 456

Query: 839  IATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC 898
            I T+F  +  W P  +FV     T L ++G                  P +         
Sbjct: 457  ITTRFNGK-RWRP--FFV----STTLSKSG------------------PTR--------- 482

Query: 899  VDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL-------- 950
                                 +  +   ++AD V+AL GA  ++ G   A +        
Sbjct: 483  ---------------------RRYVGAATVADMVKALAGAAFLDNGLDQAFICAAAMIPK 521

Query: 951  FMSWLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL 1007
              SW  + +       + P     +  ++D     E  + Y F DKS  +++MTH S   
Sbjct: 522  IKSWTTISLYDGTYSKSRPSKSLGASTIID----LEALLGYTFSDKSLAIESMTHPSCVG 577

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV---- 1063
               T  Y+RL FLG  I++ ++ R+L+  +   S   L  L+SA+ NN+  A L +    
Sbjct: 578  LYGTASYRRLSFLGAGIIELVVVRYLHRQKSFTSSKRLQSLKSAVTNNMFLAFLCLTFHW 637

Query: 1064 ----------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
                                  R+  +HF +  S  L + +   V+        + ++  
Sbjct: 638  EKQHDIIEVDSMGIPSVIQTRGRVALYHFLRSQSDSLSDKVSSLVEDLTSQLHVIKRD-- 695

Query: 1102 LMEGECDEAEDIEVPKAL---GDLFESVAGAIYLDSGMSL 1138
            L E        + V + L    D+ +SV GAIY+DS  SL
Sbjct: 696  LWENGIYPWARLSVFRGLKVFSDIVQSVFGAIYIDSLASL 735


>gi|391873779|gb|EIT82787.1| dsRNA-specific nuclease Dicer [Aspergillus oryzae 3.042]
          Length = 1089

 Score = 77.4 bits (189), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/397 (22%), Positives = 151/397 (38%), Gaps = 101/397 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            + +  IGD+ +K+ IT  L+  +   HEG L+ ++   VS+  L        FG  +I T
Sbjct: 699  RSMAFIGDAIVKFLITRQLFLHHTLWHEGLLTSVKDSIVSDTGLAAALCHSGFGSYLITT 758

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F  +  W P       ++ T L ++G                  P +            
Sbjct: 759  RFNGK-RWRP------SFVSTTLSKSG------------------PTR------------ 781

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL--------FMS 953
                              +  +   ++AD V+AL GA  ++ G   A +          S
Sbjct: 782  ------------------RRYVGAATVADMVKALAGAAFLDNGLDQAFICAAAMIPKIKS 823

Query: 954  WLGLKVIPPV---TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
            W  + +       + P     +  ++D     E  + Y F DKS  +++MTH S      
Sbjct: 824  WTTISLYDGTYSKSRPSKSLGASTIID----LEALLGYTFSDKSLAIESMTHPSCVGLYG 879

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------- 1063
            T  Y+RL FLG  I++ ++ R+L+  +   S   L  L+SA+ NN+  A L +       
Sbjct: 880  TASYRRLSFLGAGIIELVVVRYLHRQKSFTSSKRLQSLKSAVTNNMFLAFLCLTFHWEKQ 939

Query: 1064 -------------------RLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLME 1104
                               R+  +HF +  S  L + +   V+        + ++  L E
Sbjct: 940  HDIIEVDSMGVPSVIQTRGRVALYHFLRSQSDSLSDKVSSLVEDLTSQLHVIKRD--LWE 997

Query: 1105 GECDEAEDIEVPKAL---GDLFESVAGAIYLDSGMSL 1138
                    + V + L    D+ +SV GAIY+DS  SL
Sbjct: 998  NGIYPWARLSVFRGLKVFSDIVQSVFGAIYIDSLASL 1034


>gi|328766179|gb|EGF76236.1| hypothetical protein BATDEDRAFT_28693 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 334

 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 74/144 (51%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL+ +HLY+     +PG L+ LR+ LV N   A +++++G   
Sbjct: 11   LGSIFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVK 70

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+  +L        +        +    PK  GD
Sbjct: 71   YIRHTDMTMEAAIGRFAAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGD 130

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 131  VYESMLGAVFVDSQFDIHCVQSMF 154


>gi|348503355|ref|XP_003439230.1| PREDICTED: ribonuclease 3-like [Oreochromis niloticus]
          Length = 1347

 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 96/324 (29%), Positives = 140/324 (43%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLG-----LKVIPPVTNPESK 969
            ++A+C EAL+GA  +E G        G LLF S      WL      L+V  P T+ +  
Sbjct: 1012 AMANCFEALMGAVYLEGGLEEARQLFGRLLFNSEDLREVWLNYPPHPLQVQEPQTDRQLI 1071

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEESI   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1072 ETSPVL-QKLTQFEESIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1130

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG   F        ++  +R V +
Sbjct: 1131 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI-----TNDKTKRPVAL 1185

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
            +                           K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1186 RT--------------------------KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1219

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1220 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARIYTVAVYFKG 1279

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1280 ERIGCGKGPSIQQAEMGAAMDALE 1303



 Score = 48.5 bits (114), Expect = 0.026,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 939  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKL--------- 989

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 990  ------ELDRFMLYAHGPDL------------CRES---DLRHAMANCFEALMGAVYLEG 1028

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
            G  L+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 1029 G--LEEARQLFGRLLFNSEDLREVWLNYPPHPLQVQEPQTDRQLIETSP 1075



 Score = 40.4 bits (93), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 1117 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 1166


>gi|228992577|ref|ZP_04152504.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
 gi|228998625|ref|ZP_04158212.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|229006125|ref|ZP_04163813.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228755201|gb|EEM04558.1| Ribonuclease 3 [Bacillus mycoides Rock1-4]
 gi|228761093|gb|EEM10052.1| Ribonuclease 3 [Bacillus mycoides Rock3-17]
 gi|228767211|gb|EEM15847.1| Ribonuclease 3 [Bacillus pseudomycoides DSM 12442]
          Length = 245

 Score = 77.4 bits (189), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 118/258 (45%), Gaps = 41/258 (15%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F++ I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKMFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAVV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW+   EI+  +I
Sbjct: 108  LSFGNLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWEFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLELEPEN---ARFSKPEKLADGRRVRVTVEVFGKGSYKGIGR 1207
               + S     KS ++EL++ +       +  + +  A  R     V + G     G G+
Sbjct: 165  NEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNGVALGLGSGK 224

Query: 1208 NYCIAKCTAAKCALKHLK 1225
            +   A+  AA  ALK LK
Sbjct: 225  SKKEAEQQAASEALKKLK 242



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAVVCEPSLVRFANELSFGNLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|169261416|gb|ACA52288.1| nuclear ribonuclease III protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score = 77.0 bits (188), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 95/324 (29%), Positives = 139/324 (42%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIPPVTNPES---KHL 971
            ++A+C EAL+GA  +E G        G LLF +      WL    + P+   ES   +HL
Sbjct: 994  AMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP-LHPLQLQESNSDRHL 1052

Query: 972  --SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              +  +L    KFEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1053 IETSPVLKKLTKFEEAIGVEFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1112

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG   F                  
Sbjct: 1113 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF------------------ 1154

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
               ND T             +   +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1155 AITNDKT-------------KRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1201

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1202 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1261

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1262 ERIGCGKGPSIQQAEMGAAMDALE 1285



 Score = 47.8 bits (112), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 56/122 (45%), Gaps = 30/122 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY        G L   R+A+V N   A LA +L         
Sbjct: 921  ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKL--------- 971

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 972  ------ELDRFMLYAHGPDL------------CRES---DLRHAMANCFEALMGAVYLEG 1010

Query: 1135 GM 1136
            G+
Sbjct: 1011 GL 1012



 Score = 40.8 bits (94), Expect = 5.1,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 1099 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 1148


>gi|297794783|ref|XP_002865276.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297311111|gb|EFH41535.1| hypothetical protein ARALYDRAFT_494464 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 892

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 68/257 (26%), Positives = 117/257 (45%), Gaps = 31/257 (12%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D  +  E+ +NY F +K+ L + +TH +  L      +QRL F+G+  L    T+HLY  
Sbjct: 348  DSVEAVEKILNYSFVNKNLLNELLTHNTSPL------FQRLMFVGEPALSLAFTKHLYLT 401

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                 P  L+ LR A   N  +A +AV+ G + F          +I  F+ M  + D   
Sbjct: 402  YPKLEPKDLSLLRDANACNDRYARVAVKKGIYQFIISNVEKPERMILDFIDMMGKED--- 458

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS--EIE 1154
                   + + D    ++ PK L +L  +VAGA+Y+D   ++  +W+++  + +    ++
Sbjct: 459  -------DPDPDPYRVVKAPKILANLVAAVAGAVYIDVNYNVQRLWEIFRGLFEPIYTLD 511

Query: 1155 RLSVSVPKSPIRELLELEPENA-----RFSKPEKLADGRRVRVTVEVFGKGSY--KGIGR 1207
             L +  PK P   L  L  ++      R+SK     DG R  +  +V+    +   G  +
Sbjct: 512  DLRMQ-PKPPFLMLFRLADKHGKRIDFRYSK----VDGSRKNI-AQVYLDDMFIASGCSK 565

Query: 1208 NYCIAKCTAAKCALKHL 1224
                AK  AA+ AL+ L
Sbjct: 566  RIDTAKLLAAEEALQKL 582



 Score = 47.8 bits (112), Expect = 0.038,   Method: Compositional matrix adjust.
 Identities = 31/90 (34%), Positives = 47/90 (52%), Gaps = 13/90 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLIT---RH 1032
            +D  +  E+ +NY F +K+ L  A+T  S         + RLEF GD++L+   T   RH
Sbjct: 1    MDSVEAVEKILNYSFTNKTLLKDAITQRSTL-------FDRLEFFGDSVLEVAFTNYIRH 53

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
             Y + +      L DLR+A V+N  FA +A
Sbjct: 54   TYPNLKVKE---LCDLRTANVSNEKFARVA 80



 Score = 42.0 bits (97), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 23/70 (32%), Positives = 36/70 (51%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE  GDS L+ A T ++  TYPN+   +L  LR+  VSN    ++ +      S++   
Sbjct: 34  RLEFFGDSVLEVAFTNYIRHTYPNLKVKELCDLRTANVSNEKFARVAEILQIFRSLLEPI 93

Query: 843 FEPRDNWLPP 852
           + P D  + P
Sbjct: 94  YTPEDLQMQP 103


>gi|188593372|emb|CAP07635.1| drosha protein [Oikopleura dioica]
          Length = 1096

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 55/323 (17%)

Query: 925  DKSIADCVEALIGAYLIECG--PRGALLFMS----------WLGLKVIPPVTN-PESKHL 971
            + ++A+C EA++GA  ++ G  P   LL             WL     P     P+    
Sbjct: 699  NNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQRVWLDFPAHPLQQEYPDGDRA 758

Query: 972  ---SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDY 1027
               S  +L    + EE +  +FK+   L +A+T  +   N +T  + QRLEFLGDAI ++
Sbjct: 759  QIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNF 818

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            L   +L++    H  G LT LR  +V     A +A ++G   F          VI R  +
Sbjct: 819  LAAEYLFKHFPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKF----------VISR--Q 866

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG-MSLDTVWKV-Y 1145
              + +     Q                  K L DL ES  GA+++D G +++D   KV +
Sbjct: 867  SLSHDKMGWKQ------------------KILADLMESFIGALFIDRGIIAVDVFMKVAF 908

Query: 1146 YEIMKSEIERLSVSVPKSPIRE-LLELEPENARFSKPE---KLADGRRVRVTVEVFGKGS 1201
            Y  +K  I     + PKS +++  L L PE      PE     ++  ++R  VEVF +G 
Sbjct: 909  YPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEYRTTTSNSSKMRYRVEVFFRGE 968

Query: 1202 YKGIGRNYCI--AKCTAAKCALK 1222
              G G    I  A+  AA+ AL+
Sbjct: 969  RIGEGHGPSIQLAEKFAARKALE 991



 Score = 53.9 bits (128), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 34/155 (21%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +R EFLGDA+L ++++  ++        G L+ LR ALV N+  A+LA +L    +F   
Sbjct: 628  ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYF--- 684

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                                      Y+   +  + ED+    AL + FE+V GAIY+D 
Sbjct: 685  -------------------------VYIHSQDLAKREDLN--NALANCFEAVLGAIYMDG 717

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPIRE 1167
            G  L+ V ++   ++     ++R+ +  P  P+++
Sbjct: 718  G--LEPVRQLLARVLFDDKALQRVWLDFPAHPLQQ 750


>gi|153951733|ref|YP_001398912.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
 gi|189043301|sp|A7H5Y2.1|RNC_CAMJD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|152939179|gb|ABS43920.1| ribonuclease III [Campylobacter jejuni subsp. doylei 269.97]
          Length = 225

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 69/261 (26%), Positives = 118/261 (45%), Gaps = 48/261 (18%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFTKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                              E P  L D  E++ GAI+L++G        +   +M+    +
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEFAKT--IALRLMEKNFPQ 145

Query: 1156 LSVSVP----KSPIRELLE------LEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
            +   +     K+ ++E+ +       + E  R   P+ L   ++  + + + GK   + I
Sbjct: 146  IDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHL---KQFEIALMLDGKELARAI 202

Query: 1206 GRNYCIAKCTAAKCALKHLKS 1226
              +   A+  AAK AL+ L S
Sbjct: 203  AGSKKEAQQMAAKIALEKLGS 223


>gi|229086402|ref|ZP_04218578.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
 gi|228696918|gb|EEL49727.1| Ribonuclease 3 [Bacillus cereus Rock3-44]
          Length = 245

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F++ I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKTFQQKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  LDTVW    EI+  +I
Sbjct: 108  LSFGNLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LDTVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGNLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|443689602|gb|ELT91975.1| hypothetical protein CAPTEDRAFT_165112 [Capitella teleta]
          Length = 1087

 Score = 77.0 bits (188), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 88/330 (26%), Positives = 136/330 (41%), Gaps = 71/330 (21%)

Query: 927  SIADCVEALIGAYLIECGPRGA-------------LLFMSWLGLKVIPPVTN-------- 965
            ++A+C EAL+GA  I+ G   A              LF +W  L   P   +        
Sbjct: 665  AMANCFEALMGALFIDGGIDVADRVFADALFGEDNALFQAWTNLPQHPLQEDEPDGDRHW 724

Query: 966  -PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDA 1023
               S HL  V      KFE++I  +F     L +A +  S   N LT  + QRLEFLGD 
Sbjct: 725  LTHSLHLQKVA-----KFEDAIGVQFNHIRLLAKAFSLRSVGYNNLTMGHNQRLEFLGDT 779

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            I+  + + +L++    H  G L+ LRS+LVNN   + +   LG                 
Sbjct: 780  IIQLITSEYLFKYFPDHHEGHLSLLRSSLVNNFTQSVVCEDLGMM--------------- 824

Query: 1084 RFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW- 1142
                     DF +N E         +    +  K   DL E+  GA+Y+D G++   ++ 
Sbjct: 825  ---------DFVINYE--------RKVSQPKRAKDRADLVEAFLGALYVDKGLAFCKIFC 867

Query: 1143 -KVYYEIMKSEIERLSVSVPKS-------PIRELLELEPENARFSKPEKLADGRRVRVTV 1194
               +Y  +K  I+    + PKS        +R L E +P+   +   E        + TV
Sbjct: 868  QVCFYPRLKEFIKNALWNDPKSQLQQCCLTLRGLEEEDPDIPIYKVLEFTGPTNTRKYTV 927

Query: 1195 EVFGKGSYKGIGRNYCI--AKCTAAKCALK 1222
             V+ K     +G+ + I  A+  AA+ ALK
Sbjct: 928  AVYFKRHRLAVGQGHSIQQAEMNAAQSALK 957



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 58/252 (23%), Positives = 93/252 (36%), Gaps = 85/252 (33%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFL----------NTLTDC--------------- 1013
             D  EE I Y+F ++  L  A+TH S+ +          N+LT+C               
Sbjct: 503  LDVLEERIQYKFNNRILLQLALTHPSFRIKFGTNPDHARNSLTNCGMRQLDYGDRKIHYQ 562

Query: 1014 ----------------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
                                        Y+RLEFLGDAI++++ + HL+        G L
Sbjct: 563  HRKRGINTLFHIMSKMGQKEEVQSEIFHYERLEFLGDAIVEFITSIHLFFMFPGVEEGGL 622

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            T  R A+V N     LA +L                                Q++ L   
Sbjct: 623  TMYRIAIVQNPHLTKLAGKLNL------------------------------QDFMLYAH 652

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPI 1165
              D   D ++  A+ + FE++ GA+++D G  +D   +V+ + +  E   L  +    P 
Sbjct: 653  GPDLCRDKDLRHAMANCFEALMGALFIDGG--IDVADRVFADALFGEDNALFQAWTNLPQ 710

Query: 1166 RELLELEPENAR 1177
              L E EP+  R
Sbjct: 711  HPLQEDEPDGDR 722


>gi|302412697|ref|XP_003004181.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
 gi|261356757|gb|EEY19185.1| conserved hypothetical protein [Verticillium albo-atrum VaMs.102]
          Length = 1240

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 54/151 (35%), Positives = 80/151 (52%), Gaps = 16/151 (10%)

Query: 923  IPDKSIADCVEALIGAYLIECGPRGAL----LFMSWLGLKVIPPVTN------PESKHLS 972
            I  K++AD VEALIGA  I+ G   A+    +F+  L  K++P          P    L 
Sbjct: 872  ISTKTLADVVEALIGAAYIDGGLAKAIGCISIFLRELEWKLLPACQEILHSLAPPDVSLP 931

Query: 973  DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH 1032
             +L+      EE I+Y F  K  L++++THAS+    +  C +RLEFLGDAILD ++  H
Sbjct: 932  PMLV----PLEELIDYTFTKKILLIESITHASFTAGHVNGCLERLEFLGDAILDDIVVSH 987

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAV 1063
            L+    +H    L  L++A VN  +   LA+
Sbjct: 988  LFPLNLSHDRMHL--LKTASVNGDLLGFLAL 1016


>gi|78778218|ref|YP_394533.1| ribonuclease III [Sulfurimonas denitrificans DSM 1251]
 gi|78498758|gb|ABB45298.1| RNAse III [Sulfurimonas denitrificans DSM 1251]
          Length = 226

 Score = 76.6 bits (187), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 118/257 (45%), Gaps = 50/257 (19%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            +  EE + Y+FK++  +++A+TH S+   + N      +RLEFLGDA+LD ++  +L+  
Sbjct: 6    EALEEILGYKFKNQKLIIEALTHKSHKQPYDN------ERLEFLGDAVLDLIVGEYLFFK 59

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
              +   GTL+ +R+ALVN   F  LA                                 L
Sbjct: 60   FASSDEGTLSKIRAALVNEDGFERLA-----------------------------RSINL 90

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL 1156
             +  YL   E +     E    L + FE++ GAIYL+SG  LD V  +   I++   + +
Sbjct: 91   GEYIYLSNAEENNGGR-EKASLLSNAFEAMIGAIYLESG--LDIVKPIAIGIIERNYQEI 147

Query: 1157 SVSVPKSPIRELLELEPENARFSK-PEKLADGRR-------VRVTVEVFGKGSYKGIGRN 1208
            S+       +  L+ E   ARF + PE +    R         V V + GK   + IG++
Sbjct: 148  SLDSLFRDYKTTLQ-ELTQARFGETPEYIVVASRGPDHKKEFEVAVIIEGKEYARAIGKS 206

Query: 1209 YCIAKCTAAKCALKHLK 1225
              IA+  AA+ A+K LK
Sbjct: 207  KKIAQQEAAEMAVKILK 223


>gi|390360066|ref|XP_800324.2| PREDICTED: ribonuclease 3-like [Strongylocentrotus purpuratus]
          Length = 1683

 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 86/323 (26%), Positives = 141/323 (43%), Gaps = 57/323 (17%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIPPVTN-PES-KHL- 971
            ++A+C+EA++GA  +E G        G LLF        WL     P   + PE+ +HL 
Sbjct: 1126 AMANCLEAVMGAIYLEAGLDLCRKIFGKLLFEEEYLQTIWLNHPKDPLQADFPETDRHLI 1185

Query: 972  -SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT-DCYQRLEFLGDAILDYLI 1029
             +  +L     FE     RF     L +A T  +     LT    QRLEFLGD++L  ++
Sbjct: 1186 KNSEVLQKLTVFEGDTGMRFTHIRLLARAFTQRTVGYTNLTMGSNQRLEFLGDSVLQLVV 1245

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + +LY+    H  G L+ LRS+LVNN   + +A  LG   +          +I+   + +
Sbjct: 1246 SSYLYKHFPNHHEGHLSLLRSSLVNNKTQSIIAQDLGLVEY----------IIEPKTRSR 1295

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW--KVYYE 1147
             EN+  +                    K + DL E++ GA+Y+D G+ + + +   V+Y 
Sbjct: 1296 NENNIPM--------------------KIMADLVEALIGAMYVDHGLEVVSTFCSVVFYP 1335

Query: 1148 IMKSEIERLSVSVPKSPIRE---LLELEPE-----NARFSKPEKLADGRRVRVTVEVFGK 1199
             +K  I+    +  KS +++    L +E +     N +        + R+  V V    K
Sbjct: 1336 RLKDFIQTQHWNDAKSQLQQCCLTLRVEGQEPDVPNYKVIGQSGPTNSRQYSVAVYFKSK 1395

Query: 1200 GSYKGIGRNYCIAKCTAAKCALK 1222
                G   N   A+  AAK AL+
Sbjct: 1396 RMSTGTASNIRDAEMEAAKNALR 1418



 Score = 51.6 bits (122), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 34/174 (19%)

Query: 995  YLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVN 1054
            Y + ++  ++  L +    Y+RLEFLGDA+++++ + HLY        G L   R ALV 
Sbjct: 1033 YRIMSLMASNDELPSHIKNYERLEFLGDAVIEFISSTHLYHLFPDLEEGGLATYRMALVQ 1092

Query: 1055 NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIE 1114
            N   + LA +L                                 +Y L     D     +
Sbjct: 1093 NQHLSVLAKKLEL------------------------------DKYMLYAHGPDLCRPYD 1122

Query: 1115 VPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE--IERLSVSVPKSPIR 1166
            +  A+ +  E+V GAIYL++G  LD   K++ +++  E  ++ + ++ PK P++
Sbjct: 1123 LRHAMANCLEAVMGAIYLEAG--LDLCRKIFGKLLFEEEYLQTIWLNHPKDPLQ 1174



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 24/48 (50%), Positives = 32/48 (66%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            N T  S +RLE +GDS L+  ++ +LY  +PN HEG LS LRS  V+N
Sbjct: 1224 NLTMGSNQRLEFLGDSVLQLVVSSYLYKHFPNHHEGHLSLLRSSLVNN 1271


>gi|398310689|ref|ZP_10514163.1| ribonuclease III [Bacillus mojavensis RO-H-1]
          Length = 249

 Score = 76.6 bits (187), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I+R 
Sbjct: 17   IEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   + S  +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEYVQRDGKGSLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.3 bits (103), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|449526605|ref|XP_004170304.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
          Length = 339

 Score = 76.6 bits (187), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E  ++Y+FK+K  L +A+TH+SY LN+ +  Y RLEF+GD+ +   I+ + +      +
Sbjct: 10   IERILSYKFKNKKLLEEALTHSSY-LNSPS--YDRLEFIGDSAIGLAISTYFFPLYPDLN 66

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G LT LR+A V+    A +AV    + + +  +  L + ++ F    A  D ++   Y 
Sbjct: 67   QGQLTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSI--PYG 124

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
             +         ++ PK L D+ ESVAGAIY+D    L  +W +  + +K       +   
Sbjct: 125  GL---------VKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLEAD 175

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCAL 1221
              P+  L E   +  +    E    G      V V  +    G  +   IA+  AA+ AL
Sbjct: 176  PQPVTLLFEDCQKKGKQVHIENQEKGSTYVAKVYVDRRLVASGSSKQKPIARLNAAREAL 235

Query: 1222 KHLKSAKPADVK 1233
              L  +    +K
Sbjct: 236  IILSDSTDTKIK 247



 Score = 44.3 bits (103), Expect = 0.48,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           PS  RLE IGDS +  AI+ + +  YP++++G+L+ LR+  VS   L ++ 
Sbjct: 37  PSYDRLEFIGDSAIGLAISTYFFPLYPDLNQGQLTLLRAANVSTEKLARVA 87


>gi|419694651|ref|ZP_14222609.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
 gi|380670012|gb|EIB85278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9872]
          Length = 224

 Score = 76.6 bits (187), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L   +F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGNFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|449459586|ref|XP_004147527.1| PREDICTED: ribonuclease 3-like protein 2-like [Cucumis sativus]
          Length = 353

 Score = 76.6 bits (187), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 68/252 (26%), Positives = 115/252 (45%), Gaps = 14/252 (5%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E  ++Y+FK+K  L +A+TH+SY LN+ +  Y RLEF+GD+ +   I+ + +      +
Sbjct: 24   IERILSYKFKNKKLLEEALTHSSY-LNSPS--YDRLEFIGDSAIGLAISTYFFPLYPDLN 80

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G LT LR+A V+    A +AV    + + +  +  L + ++ F    A  D ++   Y 
Sbjct: 81   QGQLTLLRAANVSTEKLARVAVLHRLYSYVRRNADDLDDNVREFADAVALEDNSI--PYG 138

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVP 1161
             +         ++ PK L D+ ESVAGAIY+D    L  +W +  + +K       +   
Sbjct: 139  GL---------VKAPKVLADIVESVAGAIYVDVEFDLQKLWAIIKDFLKPIYTPEDLKAD 189

Query: 1162 KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCAL 1221
              P+  L E   +  +    E    G      V V  +    G  +   IA+  AA+ AL
Sbjct: 190  PQPVTLLFEDCQKKGKQVHIENQEKGSTYVAKVYVDRRLVASGSSKQKPIARLNAAREAL 249

Query: 1222 KHLKSAKPADVK 1233
              L  +    +K
Sbjct: 250  IILSDSTDTKIK 261



 Score = 44.3 bits (103), Expect = 0.50,   Method: Compositional matrix adjust.
 Identities = 20/51 (39%), Positives = 33/51 (64%)

Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           PS  RLE IGDS +  AI+ + +  YP++++G+L+ LR+  VS   L ++ 
Sbjct: 51  PSYDRLEFIGDSAIGLAISTYFFPLYPDLNQGQLTLLRAANVSTEKLARVA 101


>gi|350265905|ref|YP_004877212.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
 gi|349598792|gb|AEP86580.1| ribonuclease III [Bacillus subtilis subsp. spizizenii TU-B-10]
          Length = 249

 Score = 76.3 bits (186), Expect = 9e-11,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I+R 
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   + S  +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEYVQRDGKGSLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.3 bits (103), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|306833964|ref|ZP_07467088.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|336064708|ref|YP_004559567.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
 gi|304423965|gb|EFM27107.1| ribonuclease III [Streptococcus bovis ATCC 700338]
 gi|334282908|dbj|BAK30481.1| ribonuclease III [Streptococcus pasteurianus ATCC 43144]
          Length = 228

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 115/252 (45%), Gaps = 45/252 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY-----FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            K ++     F+DK+ L  A TH SY      LN   +  +RLEFLGDA+L  LI+++L++
Sbjct: 7    KLQQDFGIVFEDKTLLETAFTHTSYANEHRLLNISHN--ERLEFLGDAVLQLLISQYLFK 64

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ +RS +V     A  +   GF  F K L  G         K    N  T
Sbjct: 65   KYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIK-LGNGEE-------KSGGRNRDT 116

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
            +                      LGDLFE+  GA+ +D G+  + V K   ++M  ++E+
Sbjct: 117  I----------------------LGDLFEAFLGALLMDQGV--EAVNKFLNQVMIPQVEK 152

Query: 1156 LS---VSVPKSPIRELLELEPE---NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
             +   V   K+ ++ELL+   +   + R S     A  +   VTV V  K   +GIG++ 
Sbjct: 153  GNFERVKDYKTTLQELLQGHGDVTIDYRVSNESGPAHAKVFEVTVYVNDKAKSQGIGKSK 212

Query: 1210 CIAKCTAAKCAL 1221
             +A+  AAK AL
Sbjct: 213  KLAEQDAAKNAL 224


>gi|16078656|ref|NP_389475.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221309468|ref|ZP_03591315.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|221313793|ref|ZP_03595598.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. NCIB 3610]
 gi|221318717|ref|ZP_03600011.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. JH642]
 gi|221322988|ref|ZP_03604282.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SMY]
 gi|321315359|ref|YP_004207646.1| ribonuclease III [Bacillus subtilis BSn5]
 gi|384175334|ref|YP_005556719.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
 gi|386758316|ref|YP_006231532.1| ribonuclease III [Bacillus sp. JS]
 gi|402775838|ref|YP_006629782.1| ribonuclease III [Bacillus subtilis QB928]
 gi|418033261|ref|ZP_12671738.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
 gi|428279187|ref|YP_005560922.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
 gi|430758984|ref|YP_007209705.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
 gi|443632739|ref|ZP_21116918.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
 gi|449094285|ref|YP_007426776.1| ribonuclease III [Bacillus subtilis XF-1]
 gi|452914014|ref|ZP_21962641.1| ribonuclease III [Bacillus subtilis MB73/2]
 gi|7531275|sp|P51833.2|RNC_BACSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|2633965|emb|CAB13466.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. 168]
 gi|291484144|dbj|BAI85219.1| ribonuclease III [Bacillus subtilis subsp. natto BEST195]
 gi|320021633|gb|ADV96619.1| ribonuclease III [Bacillus subtilis BSn5]
 gi|349594558|gb|AEP90745.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. RO-NN-1]
 gi|351469409|gb|EHA29585.1| ribonuclease III [Bacillus subtilis subsp. subtilis str. SC-8]
 gi|384931598|gb|AFI28276.1| ribonuclease III [Bacillus sp. JS]
 gi|402481020|gb|AFQ57529.1| Ribonuclease III [Bacillus subtilis QB928]
 gi|407958999|dbj|BAM52239.1| ribonuclease III [Synechocystis sp. PCC 6803]
 gi|407964576|dbj|BAM57815.1| ribonuclease III [Bacillus subtilis BEST7003]
 gi|430023504|gb|AGA24110.1| Ribonuclease III Rnc [Bacillus subtilis subsp. subtilis str. BSP1]
 gi|443347562|gb|ELS61620.1| ribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC 13429]
 gi|449028200|gb|AGE63439.1| ribonuclease III [Bacillus subtilis XF-1]
 gi|452116434|gb|EME06829.1| ribonuclease III [Bacillus subtilis MB73/2]
          Length = 249

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I+R 
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   + S  +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEYVQRDGKGSLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.3 bits (103), Expect = 0.40,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|163846691|ref|YP_001634735.1| ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222524496|ref|YP_002568967.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
 gi|254807243|sp|A9WJ69.1|RNC_CHLAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|254807245|sp|B9LB70.1|RNC_CHLSY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|163667980|gb|ABY34346.1| Ribonuclease III [Chloroflexus aurantiacus J-10-fl]
 gi|222448375|gb|ACM52641.1| Ribonuclease III [Chloroflexus sp. Y-400-fl]
          Length = 244

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 67/210 (31%), Positives = 92/210 (43%), Gaps = 42/210 (20%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYF------LNTLTDCYQRLEFLGDAILDYLIT 1030
            D   + E +I   F+D++ L  A  H S F      LN LTD  +RLEFLGD++L ++ T
Sbjct: 3    DRLAELERAIGITFRDRTLLQTAFMHRSLFNEQPHLLNHLTD-NERLEFLGDSVLHFVTT 61

Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090
              L+E        TLT+ R+ALV+    A  A +                          
Sbjct: 62   TWLFETFPDQDEATLTNWRAALVSTKGLAECAAQ-------------------------- 95

Query: 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
               F L Q  YL  GE D        K L DLFE++ GAIYLD G  L+T         +
Sbjct: 96   ---FNLGQYAYLSRGE-DNPGGRSRQKLLADLFEALVGAIYLDQG--LETARAFIVPFWQ 149

Query: 1151 SEIERLSVSVPKSPIRELLELEPENARFSK 1180
            + IE++ + +   P   L EL    ARF +
Sbjct: 150  ARIEQI-IHIDLDPTTRLQEL--MQARFKQ 176



 Score = 44.7 bits (104), Expect = 0.35,   Method: Composition-based stats.
 Identities = 34/101 (33%), Positives = 51/101 (50%), Gaps = 6/101 (5%)

Query: 767 FDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
           F+ QP L NH   + +RLE +GDS L +  T +L+ T+P+  E  L++ R+  VS   L 
Sbjct: 32  FNEQPHLLNHLTDN-ERLEFLGDSVLHFVTTTWLFETFPDQDEATLTNWRAALVSTKGLA 90

Query: 827 KLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA 867
           +   Q   G+    ++ E  DN   PG    + L   L EA
Sbjct: 91  ECAAQFNLGQYAYLSRGE--DN---PGGRSRQKLLADLFEA 126


>gi|328766772|gb|EGF76825.1| hypothetical protein BATDEDRAFT_28342 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 460

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL  +HLY+     +PG L+ LR+ LV N   A +++++G   
Sbjct: 137  LGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVK 196

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+  +L        +        +    PK  GD
Sbjct: 197  YIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGD 256

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 257  VYESMLGAVFVDSQFDIHCVQSMF 280


>gi|445063741|ref|ZP_21375899.1| ribonuclease III [Brachyspira hampsonii 30599]
 gi|444504876|gb|ELV05480.1| ribonuclease III [Brachyspira hampsonii 30599]
          Length = 245

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 76/258 (29%), Positives = 123/258 (47%), Gaps = 49/258 (18%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAH 1040
            + +I Y F++KSYLL+A+TH +Y   +       QRLEFLGD++L  +I+ +L++   + 
Sbjct: 11   QAAIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLVISDYLFKKYNSS 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G L+ ++S+LV+    A ++         K L  G               DF      
Sbjct: 71   KEGVLSKVKSSLVSQKSLADIS---------KELKLG---------------DF------ 100

Query: 1101 YLMEGECDEAEDIEV-PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERL-SV 1158
             L+ G  +EA         L DLFE++ GAIYLDSG++       Y  +M++  ERL ++
Sbjct: 101  -LLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGIT-----SAYKFVMRAYKERLGNL 154

Query: 1159 SVP------KSPIRELLELEPENARFSKP-EKLADGRRVRVTVEVF--GKGSYKGIGRNY 1209
             +       K+  +EL++ + + +   K  E   D        EVF   K    GIG++ 
Sbjct: 155  DIENFDKDYKTIFQELIQKKHKTSPIYKSYEYYDDNNHEMFKAEVFVNDKNFALGIGKSK 214

Query: 1210 CIAKCTAAKCALKHLKSA 1227
              A+  AAK AL  ++ A
Sbjct: 215  KEAETNAAKKALDKIEMA 232


>gi|351694357|gb|EHA97275.1| Ribonuclease 3 [Heterocephalus glaber]
          Length = 1388

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 195/491 (39%), Gaps = 95/491 (19%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            D  P   NH     +RLE +GD+ +++  ++ LY  +P++ EG L+  R+  V N +L  
Sbjct: 913  DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 968

Query: 828  LGKQKVFGESMI-----------------ATKFEPRDNWLPPGYFVPKYLETALIEAGFP 870
            L K+      M+                 A  FE              YLE  L EA   
Sbjct: 969  LAKKLELDRFMLYAHGPDLCRESDLRHAMANCFE--------ALIGAVYLEGTLEEA--- 1017

Query: 871  ASLWNCLSLPNLKELSPEKVLE-----IIKQKCVDLDCTVDMNVQSVVPYN---LVTQHS 922
              L+  L   +   +  EK L       +K +C      VD++ + V+  N   + T+ +
Sbjct: 1018 KQLFGRLLFNDPVRVKSEKFLSGYFVYKVKDECKAFRA-VDLDEKPVLFRNEAVMQTEGA 1076

Query: 923  IPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKF 982
            +   S+ +  +            R   L      L++  P T+ +    S VL     +F
Sbjct: 1077 VQAVSVGEQTDL-----------REVWLNYPLHPLQLQEPNTDRQLIETSPVL-QKLTEF 1124

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLITRHLYEDERAHS 1041
            EE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  + T +L+     H 
Sbjct: 1125 EEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLFIHFPDHH 1184

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G LT LRS+LVNN   A +A  LG                               QEY 
Sbjct: 1185 EGHLTLLRSSLVNNRTQAKVAEELGM------------------------------QEYA 1214

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YYEIMKSEIERLSVS 1159
            +   +      +   K L DL ES   A+Y+D  +  + T   V ++  +K  I     +
Sbjct: 1215 ITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN 1273

Query: 1160 VPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCI-- 1211
             PKS +++  L L     EP+   +   + +        TV V+ KG   G G+   I  
Sbjct: 1274 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQ 1333

Query: 1212 AKCTAAKCALK 1222
            A+  AA  AL+
Sbjct: 1334 AEMGAAMDALE 1344


>gi|160333099|ref|NP_001103942.1| ribonuclease 3 [Danio rerio]
 gi|124481653|gb|AAI33135.1| Zgc:158612 [Danio rerio]
          Length = 1289

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 140/324 (43%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLG-----LKVIPPVTNPESK 969
            ++A+C EALIGA  +E G        G LLF +      WL      L+V  P+T+ +  
Sbjct: 959  AMANCFEALIGAVYLEGGLEEAKDLFGRLLFNTEDMREVWLNYPPHPLQVQEPLTDRQLI 1018

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL      FE++I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1019 ESSPVL-QKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1077

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG   F        ++  +R V +
Sbjct: 1078 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEFAI-----TNDKTKRPVAL 1132

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
            +                           K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1133 RT--------------------------KTLADLLESFIAALYIDKDLEFVHTFMNVCFF 1166

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1167 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1226

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1227 ERIGCGKGPSIQQAEMGAAMDALE 1250



 Score = 49.3 bits (116), Expect = 0.013,   Method: Compositional matrix adjust.
 Identities = 35/122 (28%), Positives = 57/122 (46%), Gaps = 30/122 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 886  ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAMLAKKL--------- 936

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 937  ------ELDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 975

Query: 1135 GM 1136
            G+
Sbjct: 976  GL 977



 Score = 40.4 bits (93), Expect = 5.6,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 1064 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 1113


>gi|30021937|ref|NP_833568.1| ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206971258|ref|ZP_03232209.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218232410|ref|YP_002368650.1| ribonuclease III [Bacillus cereus B4264]
 gi|218899002|ref|YP_002447413.1| ribonuclease III [Bacillus cereus G9842]
 gi|228902352|ref|ZP_04066509.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|228909674|ref|ZP_04073497.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228922603|ref|ZP_04085903.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
 gi|228954126|ref|ZP_04116154.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228960065|ref|ZP_04121729.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228973866|ref|ZP_04134442.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228980456|ref|ZP_04140766.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|229047536|ref|ZP_04193126.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|229071347|ref|ZP_04204570.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|229081104|ref|ZP_04213614.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|229111320|ref|ZP_04240873.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|229129125|ref|ZP_04258098.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|229146420|ref|ZP_04274791.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|229152048|ref|ZP_04280243.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|229180125|ref|ZP_04307469.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|229192018|ref|ZP_04318988.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|296504344|ref|YP_003666044.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|384187909|ref|YP_005573805.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
 gi|402558825|ref|YP_006601549.1| ribonuclease III [Bacillus thuringiensis HD-771]
 gi|410676223|ref|YP_006928594.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|423359115|ref|ZP_17336618.1| ribonuclease 3 [Bacillus cereus VD022]
 gi|423385352|ref|ZP_17362608.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
 gi|423412346|ref|ZP_17389466.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
 gi|423425985|ref|ZP_17403016.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
 gi|423431869|ref|ZP_17408873.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
 gi|423437304|ref|ZP_17414285.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
 gi|423503473|ref|ZP_17480065.1| ribonuclease 3 [Bacillus cereus HD73]
 gi|423528290|ref|ZP_17504735.1| ribonuclease 3 [Bacillus cereus HuB1-1]
 gi|423561745|ref|ZP_17538021.1| ribonuclease 3 [Bacillus cereus MSX-A1]
 gi|423582059|ref|ZP_17558170.1| ribonuclease 3 [Bacillus cereus VD014]
 gi|423585742|ref|ZP_17561829.1| ribonuclease 3 [Bacillus cereus VD045]
 gi|423628942|ref|ZP_17604691.1| ribonuclease 3 [Bacillus cereus VD154]
 gi|423635380|ref|ZP_17611033.1| ribonuclease 3 [Bacillus cereus VD156]
 gi|423641070|ref|ZP_17616688.1| ribonuclease 3 [Bacillus cereus VD166]
 gi|423649712|ref|ZP_17625282.1| ribonuclease 3 [Bacillus cereus VD169]
 gi|423656708|ref|ZP_17632007.1| ribonuclease 3 [Bacillus cereus VD200]
 gi|434376952|ref|YP_006611596.1| ribonuclease III [Bacillus thuringiensis HD-789]
 gi|449090792|ref|YP_007423233.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str. HD73]
 gi|452200288|ref|YP_007480369.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
            IS5056]
 gi|38372411|sp|Q819V8.1|RNC_BACCR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|226735367|sp|B7IUK8.1|RNC_BACC2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|226735368|sp|B7HDX2.1|RNC_BACC4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|29897493|gb|AAP10769.1| Ribonuclease III [Bacillus cereus ATCC 14579]
 gi|206734030|gb|EDZ51201.1| ribonuclease III [Bacillus cereus AH1134]
 gi|218160367|gb|ACK60359.1| ribonuclease III [Bacillus cereus B4264]
 gi|218544165|gb|ACK96559.1| ribonuclease III [Bacillus cereus G9842]
 gi|228591569|gb|EEK49418.1| Ribonuclease 3 [Bacillus cereus ATCC 10876]
 gi|228603334|gb|EEK60811.1| Ribonuclease 3 [Bacillus cereus 172560W]
 gi|228631397|gb|EEK88031.1| Ribonuclease 3 [Bacillus cereus m1550]
 gi|228637053|gb|EEK93512.1| Ribonuclease 3 [Bacillus cereus BDRD-ST24]
 gi|228654362|gb|EEL10227.1| Ribonuclease 3 [Bacillus cereus BDRD-Cer4]
 gi|228672096|gb|EEL27387.1| Ribonuclease 3 [Bacillus cereus Rock1-15]
 gi|228702148|gb|EEL54624.1| Ribonuclease 3 [Bacillus cereus Rock4-2]
 gi|228711801|gb|EEL63753.1| Ribonuclease 3 [Bacillus cereus F65185]
 gi|228723783|gb|EEL75138.1| Ribonuclease 3 [Bacillus cereus AH676]
 gi|228779276|gb|EEM27533.1| Ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|228785891|gb|EEM33894.1| Ribonuclease 3 [Bacillus thuringiensis serovar thuringiensis str.
            T01001]
 gi|228799581|gb|EEM46534.1| Ribonuclease 3 [Bacillus thuringiensis serovar pakistani str. T13001]
 gi|228805446|gb|EEM52037.1| Ribonuclease 3 [Bacillus thuringiensis serovar kurstaki str. T03a001]
 gi|228837032|gb|EEM82373.1| Ribonuclease 3 [Bacillus thuringiensis serovar huazhongensis BGSC
            4BD1]
 gi|228849963|gb|EEM94794.1| Ribonuclease 3 [Bacillus thuringiensis IBL 200]
 gi|228857321|gb|EEN01824.1| Ribonuclease 3 [Bacillus thuringiensis IBL 4222]
 gi|296325396|gb|ADH08324.1| ribonuclease III [Bacillus thuringiensis BMB171]
 gi|326941618|gb|AEA17514.1| ribonuclease III [Bacillus thuringiensis serovar chinensis CT-43]
 gi|401084987|gb|EJP93233.1| ribonuclease 3 [Bacillus cereus VD022]
 gi|401104414|gb|EJQ12391.1| ribonuclease 3 [Bacillus cereus BAG3O-2]
 gi|401110732|gb|EJQ18631.1| ribonuclease 3 [Bacillus cereus BAG3X2-2]
 gi|401116625|gb|EJQ24463.1| ribonuclease 3 [Bacillus cereus BAG4O-1]
 gi|401120459|gb|EJQ28255.1| ribonuclease 3 [Bacillus cereus BAG4X12-1]
 gi|401202002|gb|EJR08867.1| ribonuclease 3 [Bacillus cereus MSX-A1]
 gi|401212938|gb|EJR19679.1| ribonuclease 3 [Bacillus cereus VD014]
 gi|401233088|gb|EJR39584.1| ribonuclease 3 [Bacillus cereus VD045]
 gi|401268487|gb|EJR74535.1| ribonuclease 3 [Bacillus cereus VD154]
 gi|401278131|gb|EJR84067.1| ribonuclease 3 [Bacillus cereus VD156]
 gi|401280131|gb|EJR86053.1| ribonuclease 3 [Bacillus cereus VD166]
 gi|401282992|gb|EJR88889.1| ribonuclease 3 [Bacillus cereus VD169]
 gi|401290449|gb|EJR96143.1| ribonuclease 3 [Bacillus cereus VD200]
 gi|401635408|gb|EJS53163.1| ribonuclease 3 [Bacillus cereus BAG1X1-2]
 gi|401787477|gb|AFQ13516.1| ribonuclease III [Bacillus thuringiensis HD-771]
 gi|401875509|gb|AFQ27676.1| ribonuclease III [Bacillus thuringiensis HD-789]
 gi|402451953|gb|EJV83772.1| ribonuclease 3 [Bacillus cereus HuB1-1]
 gi|402459694|gb|EJV91431.1| ribonuclease 3 [Bacillus cereus HD73]
 gi|409175352|gb|AFV19657.1| ribonuclease 3 [Bacillus thuringiensis Bt407]
 gi|449024549|gb|AGE79712.1| ribonuclease III [Bacillus thuringiensis serovar kurstaki str. HD73]
 gi|452105681|gb|AGG02621.1| Ribonuclease III [Bacillus thuringiensis serovar thuringiensis str.
            IS5056]
          Length = 245

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW+   EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWEFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|419683175|ref|ZP_14211884.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
 gi|380659791|gb|EIB75756.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1213]
          Length = 224

 Score = 76.3 bits (186), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 71/257 (27%), Positives = 119/257 (46%), Gaps = 44/257 (17%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLMHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL-DTVWKVYYEIMKSEIE 1154
                              E P  L D  E++ GAI+L++G     T+     E    +I+
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEFAKTIALRLIEKNFPQID 147

Query: 1155 -RLSVSVPKSPIRELLELEP------ENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGR 1207
             ++ +   K+ ++E+ + E       E  R   P+ L   ++  + + + GK   + I  
Sbjct: 148  AKILIKDYKTKLQEITQGEIGQTPQYETVRAFGPDHL---KQFEIALMLDGKELARAIAG 204

Query: 1208 NYCIAKCTAAKCALKHL 1224
            +   A+  AAK AL+ L
Sbjct: 205  SKKEAQQMAAKIALEKL 221


>gi|34558193|ref|NP_908008.1| ribonuclease III [Wolinella succinogenes DSM 1740]
 gi|81653364|sp|Q7M840.1|RNC_WOLSU RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|34483912|emb|CAE10908.1| RIBONUCLEASE III [Wolinella succinogenes]
          Length = 238

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 54/166 (32%), Positives = 85/166 (51%), Gaps = 39/166 (23%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRH 1032
            ++  ++FE+ + YRF++K+ L++A+TH SY   + N      +RLEFLGDA+LD +I   
Sbjct: 1    MESIEEFEKRLGYRFQNKNLLIEALTHKSYKKPYNN------ERLEFLGDAVLDLVIGEF 54

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+        G L+ +R++LVN   FA LA R+         S G H     F+    EN
Sbjct: 55   LFLKFPKADEGELSKMRASLVNEKGFAKLAERV---------SLGRH----IFISNAEEN 101

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            +                 +  E P  L + FE+  GAIYL++G+S+
Sbjct: 102  N-----------------KGREKPSLLSNAFEATMGAIYLETGLSV 130


>gi|339448388|ref|ZP_08651944.1| ribonuclease III [Lactobacillus fructivorans KCTC 3543]
          Length = 235

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 75/261 (28%), Positives = 111/261 (42%), Gaps = 55/261 (21%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D  E+  N +F D+S L +AMT ASY           Y+RLEFLGDA+   +++ +++  
Sbjct: 7    DLLEDKFNIKFNDESLLDEAMTQASYVNEHPGQGLKFYERLEFLGDAVYQLVVSDYIFRR 66

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                  G LT LR+A+VN   F+  A      HF K++  G  E                
Sbjct: 67   FPELPQGRLTRLRAAMVNEHSFSRFAREC---HFDKYIRLGKGE---------------- 107

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-------------LDTVWK 1143
                       ++A   +    L D+FES  GA+YLD GM+             LD  W 
Sbjct: 108  -----------EKANARQRDSLLCDIFESFIGAVYLDQGMATVKHFCEIVIFPKLDEGW- 155

Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
             + E    + E   V     P+    EL  E+     P+   + R+ +V V++ GK    
Sbjct: 156  -FDEFFDHKTELQEVVQEDGPVDLDYELVSEDG----PD---NDRKFKVAVKINGKEMGV 207

Query: 1204 GIGRNYCIAKCTAAKCALKHL 1224
            G+G +   A+  AAK AL  L
Sbjct: 208  GLGHSKKDAEQKAAKKALNEL 228


>gi|121613213|ref|YP_001001278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504230|gb|EAQ72743.2| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 225

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 78/164 (47%), Gaps = 33/164 (20%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            ++   +K E S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+
Sbjct: 1    MMKNIEKLERSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLF 57

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                  + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+ 
Sbjct: 58   HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN- 103

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                               E P  L D  E++ GAI+L++G   
Sbjct: 104  ----------------GGKEKPSILSDALEAIIGAIHLEAGFEF 131


>gi|400598379|gb|EJP66096.1| RNase3 domain-containing protein [Beauveria bassiana ARSEF 2860]
          Length = 1402

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 192/494 (38%), Gaps = 116/494 (23%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK+  ++    T  +  EG L+  + + V+N  L +   +    + ++  
Sbjct: 963  ERLEFLGDSILKFCASMQAGATNLSWPEGYLTRYKDRLVANSRLSRAAVETGLAKFILTV 1022

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
             F  +        + P +LET L  +G               ++ P K  E+        
Sbjct: 1023 PFTAQK-------WHPFFLETIL--SG---------------KMKPFKKREM-------- 1050

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMS-------W 954
                                    K +AD VEAL+G   I  G   A+  +S       W
Sbjct: 1051 ----------------------STKVLADVVEALVGVAYIAGGIPKAIQCLSIFINECDW 1088

Query: 955  LG-------LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL 1007
            +             P    +S +L           EE I Y F  KS LL+A THASY  
Sbjct: 1089 IDPSECREEFFACAPSHCVDSSYLH--------ILEELIGYSFTKKSLLLEATTHASYIG 1140

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV---- 1063
            +     ++RLEFLGDA+LDY+I   L           +  +++A+VN    A L++    
Sbjct: 1141 DISGRSWERLEFLGDAVLDYMIVSKLMNRSPPLPHSRMHMIKTAMVNKDFLAFLSLEEHE 1200

Query: 1064 -------------------RLGFHHFFKHLSPGLH----EVIQRFVKMQAENDFTLNQEY 1100
                               R     F +H S G+     E  +R   ++ E    L++ +
Sbjct: 1201 LSQTESFVTEDGVVLTTNKRSALWRFIRHSSSGIGPAQLETAKRHENLRLE---ILHELH 1257

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-MKSEIER-LSV 1158
            +            +  K   DLFE++ GAI++DSG SL T       I M   +ER L+ 
Sbjct: 1258 HGTHYPWHILLKQQASKFYSDLFEALVGAIWVDSG-SLATCDAFLRRIGMLPYLERVLAD 1316

Query: 1159 SVP-KSPIRELLELEPENARFSKPE--KLADGRRV---RVTVEVFGKGSYKGIGRNYCIA 1212
            S+  + P  EL  L    ++  + E  K  DGR     R+ +     G+  G G+    A
Sbjct: 1317 SLHMQHPKEELGGLAQARSQLYEVEEVKGGDGRTTYNCRLLIGGVEVGAELG-GQTAEEA 1375

Query: 1213 KCTAAKCALKHLKS 1226
            +  AA   + HLK+
Sbjct: 1376 RVGAATKGVAHLKA 1389


>gi|328769566|gb|EGF79610.1| hypothetical protein BATDEDRAFT_26082 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 334

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL  +HLY+     +PG L+ LR+ LV N   A +++++G   
Sbjct: 11   LGSIFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVK 70

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+  +L        +        +    PK  GD
Sbjct: 71   YIRHTDMTMEAAIGRFTAWVQGYLASESSTSLPISTSATQIASARLFWNKGNTAPKTAGD 130

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 131  VYESMLGAVFVDSQFDIHCVQSMF 154


>gi|298528053|ref|ZP_07015457.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
 gi|298511705|gb|EFI35607.1| ribonuclease III [Desulfonatronospira thiodismutans ASO3-1]
          Length = 232

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 74/264 (28%), Positives = 119/264 (45%), Gaps = 42/264 (15%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             D+ ++ I YR++D   L++A+TH+SY      +  +RLEFLGDA+L+  I+  L+    
Sbjct: 2    LDELQDKIGYRYQDPELLVRALTHSSYANERHMEHNERLEFLGDAVLELCISNVLFFRFP 61

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
                G LT LR+ALV+    A LA         + L+ G +  + R  ++Q   D     
Sbjct: 62   RAPEGHLTRLRAALVSEPTLARLA---------RSLTLGDYIFLGRGEELQGGRDRD--- 109

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKSEIERL 1156
                                L D  E++ GA+YLDSG   + + +  ++ + +   +E L
Sbjct: 110  ------------------SVLADTLEAILGAVYLDSGYDGAFECIAALFEDFIPDRVEAL 151

Query: 1157 SVSVP-KSPIRE----LLELEPENARFSK--PEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
             VS   KS ++E    L    P         PE     +  RV VE+      + +  + 
Sbjct: 152  PVSKDFKSRLQEKTQGLFRARPVYTLIDSYGPEH---EKIYRVQVELPDGTGIEAMAGSV 208

Query: 1210 CIAKCTAAKCALKHLKSAKPADVK 1233
              A+  AA  AL++L S K ADV+
Sbjct: 209  KKAEQKAASKALEYLDSVKTADVR 232


>gi|254442236|ref|ZP_05055712.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
 gi|198256544|gb|EDY80852.1| ribonuclease III [Verrucomicrobiae bacterium DG1235]
          Length = 263

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 70/254 (27%), Positives = 108/254 (42%), Gaps = 38/254 (14%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDER 1038
            + E  + Y FK K  L Q++TH S+ LNT       QRLEFLGD+++  ++T  LYE   
Sbjct: 38   RLENKLGYTFKTKGLLHQSLTHPSFLLNTKDQLKNNQRLEFLGDSVIQLVLTEKLYEKFP 97

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
            +   G LT +RS        A +A  L                                 
Sbjct: 98   SLREGKLTSIRSGYARGDYMAGIARELKL------------------------------G 127

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKSEIERL 1156
            +Y +++ +   A   E   ALGD FE++ GAIYLDS    S   + ++Y  +  +   + 
Sbjct: 128  DYLILKPKDRNAGVAENDSALGDAFEALIGAIYLDSDFETSRKIILELYNYLDTAPTAKG 187

Query: 1157 SVSVPKSPIRELLE-LEPENA-RFSKPEKLADGRRVRVTVEVFGKGSY--KGIGRNYCIA 1212
             ++ PK  ++EL++ +   NA R+    +  +       V VF       KG GR    A
Sbjct: 188  VIANPKGKLQELIQPVHGNNALRYETIAQTGEAHEREFEVAVFCHDEQLGKGAGRTKKEA 247

Query: 1213 KCTAAKCALKHLKS 1226
               AA  A+  + S
Sbjct: 248  AEKAALIAIAKIDS 261



 Score = 42.0 bits (97), Expect = 2.2,   Method: Composition-based stats.
 Identities = 25/94 (26%), Positives = 50/94 (53%), Gaps = 8/94 (8%)

Query: 754 GIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLS 813
           G++  + T   F  + +  L+N+     +RLE +GDS ++  +T  LY  +P++ EGKL+
Sbjct: 51  GLLHQSLTHPSFLLNTKDQLKNN-----QRLEFLGDSVIQLVLTEKLYEKFPSLREGKLT 105

Query: 814 HLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRD 847
            +RS       +  + ++   G+ +I    +P+D
Sbjct: 106 SIRSGYARGDYMAGIARELKLGDYLI---LKPKD 136


>gi|395510877|ref|XP_003759694.1| PREDICTED: ribonuclease 3 [Sarcophilus harrisii]
          Length = 1336

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1001 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLREVWLNYPLHPLQLQEPNTDRQLI 1060

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1061 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1119

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1120 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1158

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1159 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1208

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1209 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1268

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1269 ERIGCGKGPSIQQAEMGAAMDALE 1292



 Score = 46.6 bits (109), Expect = 0.088,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 845  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 904

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 905  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 964

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 965  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 996

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 997  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDKDLREVWLNYPLHPLQLQE 1052

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1053 PNTDRQLIETSP 1064



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1106 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1164


>gi|334325445|ref|XP_001375491.2| PREDICTED: ribonuclease 3 [Monodelphis domestica]
          Length = 1362

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1001 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDKDLREVWLNYPLHPLQLQEPNTDRQLI 1060

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1061 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1119

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1120 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1158

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1159 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1208

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1209 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1268

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1269 ERIGCGKGPSIQQAEMGAAMDALE 1292



 Score = 46.6 bits (109), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 845  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 904

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 905  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 964

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 965  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 996

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 997  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDKDLREVWLNYPLHPLQLQE 1052

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1053 PNTDRQLIETSP 1064



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1106 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1164


>gi|157415855|ref|YP_001483111.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283957021|ref|ZP_06374493.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|384442208|ref|YP_005658511.1| ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
 gi|415746574|ref|ZP_11475582.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
 gi|419641678|ref|ZP_14173557.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
 gi|419643328|ref|ZP_14175076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
 gi|419697815|ref|ZP_14225542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
 gi|189043300|sp|A8FNU7.1|RNC_CAMJ8 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|157386819|gb|ABV53134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81116]
 gi|283791522|gb|EFC30319.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1336]
 gi|307748491|gb|ADN91761.1| Ribonuclease 3 [Campylobacter jejuni subsp. jejuni M1]
 gi|315931680|gb|EFV10641.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 327]
 gi|380616054|gb|EIB35273.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23357]
 gi|380622316|gb|EIB41076.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ATCC 33560]
 gi|380676845|gb|EIB91721.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23211]
          Length = 224

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|419622547|ref|ZP_14155777.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
 gi|380599261|gb|EIB19635.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23216]
          Length = 224

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|424846628|ref|ZP_18271222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
 gi|356485926|gb|EHI15913.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NW]
          Length = 224

 Score = 75.9 bits (185), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 78/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|328766294|gb|EGF76349.1| hypothetical protein BATDEDRAFT_92769 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 334

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 73/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL  +HLY+     +PG L+ LR+ LV N   A +++++G   
Sbjct: 11   LGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVK 70

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+  +L        +        +    PK  GD
Sbjct: 71   YIRHTDMTMEAAIGRFATWVQGYLASESSTSLPISTSATQIASARMFWNKGNTAPKTAGD 130

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 131  VYESMLGAVFVDSQFDIHCVQSMF 154


>gi|288905744|ref|YP_003430966.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|306831841|ref|ZP_07464997.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
 gi|325978776|ref|YP_004288492.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC
            BAA-2069]
 gi|386338195|ref|YP_006034364.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC
            43143]
 gi|288732470|emb|CBI14042.1| Ribonuclease III [Streptococcus gallolyticus UCN34]
 gi|304426039|gb|EFM29155.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus
            TX20005]
 gi|325178704|emb|CBZ48748.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC
            BAA-2069]
 gi|334280831|dbj|BAK28405.1| ribonuclease III [Streptococcus gallolyticus subsp. gallolyticus ATCC
            43143]
          Length = 228

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 116/256 (45%), Gaps = 45/256 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY-----FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            K +      F+DK+ L  A TH SY      LN   +  +RLEFLGDA+L  LI+++L++
Sbjct: 7    KLQRDFGIVFEDKTLLETAFTHTSYANEHRLLNISHN--ERLEFLGDAVLQLLISQYLFK 64

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ +RS +V     A  +   GF  F K L  G         K    N  T
Sbjct: 65   KYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIK-LGNGEE-------KSGGRNRDT 116

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
            +                      LGDLFE+  GA+ +D G+  + V K   ++M  ++E+
Sbjct: 117  I----------------------LGDLFEAFLGALLMDQGV--EAVNKFLNQVMIPQVEK 152

Query: 1156 LS---VSVPKSPIRELLELEPE---NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
             +   V   K+ ++ELL+   +   + R S     A  +   VTV V  +   +GIGR+ 
Sbjct: 153  GNFERVKDYKTTLQELLQGHGDVTIDYRVSNESGPAHAKVFEVTVYVNDEAKSQGIGRSK 212

Query: 1210 CIAKCTAAKCALKHLK 1225
             +A+  AAK AL  L+
Sbjct: 213  KLAEQDAAKNALALLQ 228


>gi|229174515|ref|ZP_04302047.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|423401309|ref|ZP_17378482.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
 gi|423457968|ref|ZP_17434765.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
 gi|423477987|ref|ZP_17454702.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
 gi|228609075|gb|EEK66365.1| Ribonuclease 3 [Bacillus cereus MM3]
 gi|401148352|gb|EJQ55845.1| ribonuclease 3 [Bacillus cereus BAG5X2-1]
 gi|401654299|gb|EJS71842.1| ribonuclease 3 [Bacillus cereus BAG2X1-2]
 gi|402428149|gb|EJV60246.1| ribonuclease 3 [Bacillus cereus BAG6X1-1]
          Length = 245

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|403069218|ref|ZP_10910550.1| ribonuclease III [Oceanobacillus sp. Ndiop]
          Length = 227

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 71/256 (27%), Positives = 109/256 (42%), Gaps = 43/256 (16%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYF---LNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
            D+ E  +N +F D S + QA TH+SY      T+    +RLEFLGDA+L+  ++++L+  
Sbjct: 4    DQLENELNIKFHDHSLIKQAFTHSSYVNEHRKTVFSDNERLEFLGDAVLELGVSQYLFRK 63

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
             +    G +T LR+A+V      + AV L F  F                          
Sbjct: 64   NQDMPEGEMTKLRAAIVCEPSLMNFAVELNFGEF-------------------------- 97

Query: 1097 NQEYYLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 L+ G+ +E     E P  L D+FE+  GA+YLD G   D   +   E +  +I  
Sbjct: 98   -----LLLGKGEEMTGGRERPAILADVFEAFLGALYLDQG--FDEALRFLKEHVFPKINT 150

Query: 1156 LSVSVPKSPIRELLELEPENARFSKPEKLAD------GRRVRVTVEVFGKGSYKGIGRNY 1209
             + S       +L EL  +N   +   K+ +       R       + G  + +G GR  
Sbjct: 151  GAFSHAMDYKSQLQELIQQNKNQTIEYKIVEEKGPSHNREFVAHAVIKGNKAGEGTGRTK 210

Query: 1210 CIAKCTAAKCALKHLK 1225
              A+  AAK AL H K
Sbjct: 211  KEAEQRAAKYALDHYK 226


>gi|147669550|ref|YP_001214368.1| ribonuclease III [Dehalococcoides sp. BAV1]
 gi|289432809|ref|YP_003462682.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|452203773|ref|YP_007483906.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
 gi|146270498|gb|ABQ17490.1| RNAse III [Dehalococcoides sp. BAV1]
 gi|288946529|gb|ADC74226.1| ribonuclease III [Dehalococcoides sp. GT]
 gi|452110832|gb|AGG06564.1| ribonuclease III [Dehalococcoides mccartyi DCMB5]
          Length = 248

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 68/270 (25%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + E S+  +F+  S L QA+ H S+     N  +   +R+EFLGDA+L  +    LY D 
Sbjct: 17   ELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDF 76

Query: 1038 RAHSPGTLTDLRSALVN--NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 G LT  RS LV   +++  +L + LG     K+L                     
Sbjct: 77   PDIQEGDLTRFRSLLVRRESLVRVALGINLG-----KYL--------------------- 110

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 YL  GE D ++    P  L   FE+V  AIY+D GM  D   +V + + K+E+ER
Sbjct: 111  -----YLGRGE-DVSKGRFKPANLAGAFEAVLAAIYIDKGM--DVTREVIFRLFKTEMER 162

Query: 1156 ---LSVSVP-KSPIRELLELE--------------PENARFSKPEKLADGRRVRVTVEVF 1197
               LS ++  KS ++EL++ +              PE+ R    E  A+ R       VF
Sbjct: 163  VQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDR-------VF 215

Query: 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
             +GS    GR+   A+  AAK AL+  +++
Sbjct: 216  AEGS----GRSKKEAETNAAKVALQQFENS 241


>gi|42782941|ref|NP_980188.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47570283|ref|ZP_00240932.1| ribonuclease III [Bacillus cereus G9241]
 gi|206978506|ref|ZP_03239364.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217961269|ref|YP_002339837.1| ribonuclease III [Bacillus cereus AH187]
 gi|222097294|ref|YP_002531351.1| ribonuclease iii [Bacillus cereus Q1]
 gi|228986992|ref|ZP_04147118.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|229157425|ref|ZP_04285503.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|229197960|ref|ZP_04324674.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|375285772|ref|YP_005106211.1| ribonuclease III [Bacillus cereus NC7401]
 gi|384181662|ref|YP_005567424.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
 gi|402556030|ref|YP_006597301.1| ribonuclease III [Bacillus cereus FRI-35]
 gi|423353551|ref|ZP_17331178.1| ribonuclease 3 [Bacillus cereus IS075]
 gi|423374354|ref|ZP_17351692.1| ribonuclease 3 [Bacillus cereus AND1407]
 gi|423395850|ref|ZP_17373051.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
 gi|423406726|ref|ZP_17383875.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
 gi|423567256|ref|ZP_17543503.1| ribonuclease 3 [Bacillus cereus MSX-A12]
 gi|423574545|ref|ZP_17550664.1| ribonuclease 3 [Bacillus cereus MSX-D12]
 gi|423604524|ref|ZP_17580417.1| ribonuclease 3 [Bacillus cereus VD102]
 gi|423615890|ref|ZP_17591724.1| ribonuclease 3 [Bacillus cereus VD115]
 gi|81409451|sp|Q732M1.1|RNC_BACC1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|226735369|sp|B7HLI2.1|RNC_BACC7 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|254807238|sp|B9IVD8.1|RNC_BACCQ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|42738868|gb|AAS42796.1| ribonuclease III [Bacillus cereus ATCC 10987]
 gi|47553047|gb|EAL11449.1| ribonuclease III [Bacillus cereus G9241]
 gi|206743285|gb|EDZ54734.1| ribonuclease III [Bacillus cereus H3081.97]
 gi|217063842|gb|ACJ78092.1| ribonuclease III [Bacillus cereus AH187]
 gi|221241352|gb|ACM14062.1| ribonuclease III [Bacillus cereus Q1]
 gi|228585439|gb|EEK43543.1| Ribonuclease 3 [Bacillus cereus m1293]
 gi|228626152|gb|EEK82901.1| Ribonuclease 3 [Bacillus cereus ATCC 4342]
 gi|228772770|gb|EEM21210.1| Ribonuclease 3 [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1]
 gi|324327746|gb|ADY23006.1| ribonuclease III [Bacillus thuringiensis serovar finitimus YBT-020]
 gi|358354299|dbj|BAL19471.1| ribonuclease III [Bacillus cereus NC7401]
 gi|401089364|gb|EJP97535.1| ribonuclease 3 [Bacillus cereus IS075]
 gi|401094266|gb|EJQ02348.1| ribonuclease 3 [Bacillus cereus AND1407]
 gi|401212070|gb|EJR18816.1| ribonuclease 3 [Bacillus cereus MSX-D12]
 gi|401214344|gb|EJR21074.1| ribonuclease 3 [Bacillus cereus MSX-A12]
 gi|401245144|gb|EJR51502.1| ribonuclease 3 [Bacillus cereus VD102]
 gi|401260427|gb|EJR66600.1| ribonuclease 3 [Bacillus cereus VD115]
 gi|401653592|gb|EJS71136.1| ribonuclease 3 [Bacillus cereus BAG2X1-1]
 gi|401660016|gb|EJS77499.1| ribonuclease 3 [Bacillus cereus BAG2X1-3]
 gi|401797240|gb|AFQ11099.1| ribonuclease III [Bacillus cereus FRI-35]
          Length = 245

 Score = 75.9 bits (185), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.4,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|345798931|ref|XP_854135.2| PREDICTED: ribonuclease 3 isoform 2 [Canis lupus familiaris]
          Length = 1373

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1038 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1097

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1098 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1156

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1157 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1195

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1196 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1245

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1246 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1305

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1306 ERIGCGKGPSIQQAEMGAAMDALE 1329



 Score = 46.6 bits (109), Expect = 0.079,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 882  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 941

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 942  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1001

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1002 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1033

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1034 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1089

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1090 PNTDRQLIETSP 1101



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1143 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1201


>gi|452205270|ref|YP_007485399.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
 gi|452112326|gb|AGG08057.1| ribonuclease III [Dehalococcoides mccartyi BTF08]
          Length = 248

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 122/270 (45%), Gaps = 68/270 (25%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + E S+  +F+  S L QA+ H S+     N  +   +R+EFLGDA+L  +    LY D 
Sbjct: 17   ELENSLGVKFEQPSLLEQALIHTSWVNENPNHPSGSNERMEFLGDAVLGVIFADRLYHDF 76

Query: 1038 RAHSPGTLTDLRSALVN--NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 G LT  RS LV   +++  +L + LG     K+L                     
Sbjct: 77   PDIQEGDLTRFRSLLVRRESLVRVALGINLG-----KYL--------------------- 110

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 YL  GE D ++    P  L   FE+V  AIY+D GM  D   +V + + K+E+ER
Sbjct: 111  -----YLGRGE-DVSKGRFKPANLAGAFEAVLAAIYIDKGM--DVTREVIFRLFKTEMER 162

Query: 1156 ---LSVSVP-KSPIRELLELE--------------PENARFSKPEKLADGRRVRVTVEVF 1197
               LS ++  KS ++EL++ +              PE+ R    E  A+ R       VF
Sbjct: 163  VQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDR-------VF 215

Query: 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
             +GS    GR+   A+ +AAK AL+  +++
Sbjct: 216  AEGS----GRSKKEAEASAAKVALQQFENS 241


>gi|75762036|ref|ZP_00741948.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
            35646]
 gi|74490482|gb|EAO53786.1| Ribonuclease III [Bacillus thuringiensis serovar israelensis ATCC
            35646]
          Length = 262

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 96/200 (48%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 34   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 93

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 94   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 124

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW+   EI+  +I
Sbjct: 125  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWEFLKEIVYPKI 181

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 182  NEGAFSHVMDYKSQLQELIQ 201



 Score = 40.4 bits (93), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 76  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 135

Query: 843 FE 844
            E
Sbjct: 136 GE 137


>gi|165973380|ref|NP_001107152.1| drosha, ribonuclease type III [Xenopus (Silurana) tropicalis]
 gi|163916533|gb|AAI57521.1| rnasen protein [Xenopus (Silurana) tropicalis]
          Length = 1325

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 94/324 (29%), Positives = 138/324 (42%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIPPVTNPES---KHL 971
            ++A+C EAL+GA  +E G        G LLF +      WL    + P+   ES   +HL
Sbjct: 994  AMANCFEALMGAVYLEGGLEEAKQLFGRLLFGNQDLRDVWLNYP-LHPLQLQESNSDRHL 1052

Query: 972  --SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              +  +L    KFEE+I   F     L +  T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1053 IETSPVLKKLTKFEEAIGVEFTHVRLLARVFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1112

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG   F                  
Sbjct: 1113 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF------------------ 1154

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
               ND T             +   +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1155 AITNDKT-------------KRPVVLRTKTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1201

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1202 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1261

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1262 ERIGCGKGPSIQQAEMGAAMDALE 1285



 Score = 48.1 bits (113), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 50/207 (24%), Positives = 92/207 (44%), Gaps = 47/207 (22%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY        G L   R+A+V N   A LA +L         
Sbjct: 921  ERLEFLGDAVVEFLTSVHLYYLFPLLEEGGLATYRTAIVQNQHLAMLAKKL--------- 971

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 972  ------ELDRFMLYAHGPDL------------CRES---DLRHAMANCFEALMGAVYLEG 1010

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEPENARFSKPEKL 1184
            G  L+   +++  ++    ++  + ++ P  P+        R L+E  P   + +K E+ 
Sbjct: 1011 G--LEEAKQLFGRLLFGNQDLRDVWLNYPLHPLQLQESNSDRHLIETSPVLKKLTKFEEA 1068

Query: 1185 --ADGRRVRVTVEVFGKGSYKGIGRNY 1209
               +   VR+   VF   + + +G N+
Sbjct: 1069 IGVEFTHVRLLARVF---TLRTVGFNH 1092



 Score = 40.8 bits (94), Expect = 5.2,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 1099 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 1148


>gi|410949736|ref|XP_003981574.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Felis catus]
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|73748788|ref|YP_308027.1| ribonuclease III [Dehalococcoides sp. CBDB1]
 gi|90101624|sp|Q3ZXY9.1|RNC_DEHSC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|73660504|emb|CAI83111.1| ribonuclease III [Dehalococcoides sp. CBDB1]
          Length = 237

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/270 (29%), Positives = 121/270 (44%), Gaps = 68/270 (25%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + E S+  +F+  S L QA+ H S+     N  +   +R+EFLGDA+L  +    LY D 
Sbjct: 6    ELENSLGVKFEQPSLLEQALIHTSWVNENPNHSSGSNERMEFLGDAVLGVIFADRLYHDF 65

Query: 1038 RAHSPGTLTDLRSALVN--NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 G LT  RS LV   +++  +L + LG     K+L                     
Sbjct: 66   PDIQEGDLTRFRSLLVRRESLVRVALGINLG-----KYL--------------------- 99

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 YL  GE D ++    P  L   FE+V  AIY+D GM  D   +V + + K+E+ER
Sbjct: 100  -----YLGRGE-DVSKGRFKPANLAGAFEAVLAAIYIDKGM--DVTREVIFRLFKTEMER 151

Query: 1156 ---LSVSVP-KSPIRELLELE--------------PENARFSKPEKLADGRRVRVTVEVF 1197
               LS ++  KS ++EL++ +              PE+ R    E  A+ R       VF
Sbjct: 152  VQTLSSNIDYKSRLQELIQAQLQLTPRYRITNFSGPEHNRLFIAEVYAEDR-------VF 204

Query: 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
             +GS    GR+   A+  AAK AL+  +++
Sbjct: 205  AEGS----GRSKKEAETNAAKVALQQFENS 230


>gi|254785337|ref|YP_003072766.1| ribonuclease III [Teredinibacter turnerae T7901]
 gi|237684548|gb|ACR11812.1| ribonuclease III [Teredinibacter turnerae T7901]
          Length = 229

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 60/194 (30%), Positives = 91/194 (46%), Gaps = 36/194 (18%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             ++  +++NY F D S L +A++H S   N      +RLEFLGD++L++LI  +LY+   
Sbjct: 9    LNQLSKALNYTFSDISLLEKALSHRSVGSNN----NERLEFLGDSLLNFLIAENLYQRFP 64

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
                G L+ LR++LV     A LA                              DF L +
Sbjct: 65   KAREGDLSRLRASLVKGETLAELA-----------------------------KDFDLGE 95

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS--LDTVWKVYYEIMKSEIERL 1156
              YL EGE  ++        L D  E++ GAIYL+SGM    DTV   + E + +     
Sbjct: 96   FLYLGEGEL-KSGGFRRASILADAVEALIGAIYLESGMDRCRDTVLHWFGERLDAIDLNS 154

Query: 1157 SVSVPKSPIRELLE 1170
            SV  PK+ ++E L+
Sbjct: 155  SVKDPKTRLQEYLQ 168



 Score = 42.4 bits (98), Expect = 1.7,   Method: Composition-based stats.
 Identities = 23/55 (41%), Positives = 29/55 (52%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
           +RLE +GDS L + I   LY  +P   EG LS LR+  V    L +L K    GE
Sbjct: 41  ERLEFLGDSLLNFLIAENLYQRFPKAREGDLSRLRASLVKGETLAELAKDFDLGE 95


>gi|402871240|ref|XP_003899581.1| PREDICTED: ribonuclease 3 [Papio anubis]
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|355691240|gb|EHH26425.1| Ribonuclease 3 [Macaca mulatta]
 gi|355749843|gb|EHH54181.1| Ribonuclease 3 [Macaca fascicularis]
 gi|387541650|gb|AFJ71452.1| ribonuclease 3 isoform 1 [Macaca mulatta]
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.091,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|1389549|dbj|BAA10976.1| ORF3 [Bacillus subtilis]
          Length = 266

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 76/257 (29%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I+R 
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   + S  +  A  R     V + G+    G GR+
Sbjct: 167  DGAFPHVMDFKSQLQEYVQRDGKGSLEYKISNEKGPAHNREFEAIVSLKGEPLGVGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLE 243



 Score = 43.5 bits (101), Expect = 0.84,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISRFLFPKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|380812086|gb|AFE77918.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|384946624|gb|AFI36917.1| ribonuclease 3 isoform 2 [Macaca mulatta]
          Length = 1329

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 994  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1053

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1054 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1112

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1113 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1151

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1152 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1201

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1202 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1261

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1262 ERIGCGKGPSIQQAEMGAAMDALE 1285



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 838  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 897

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 898  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 957

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 958  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 989

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 990  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1045

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1046 PNTDRQLIETSP 1057



 Score = 40.8 bits (94), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1099 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1157


>gi|149732818|ref|XP_001500764.1| PREDICTED: ribonuclease 3 isoform 1 [Equus caballus]
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.086,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|397495447|ref|XP_003818566.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Pan paniscus]
          Length = 1343

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1008 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1067

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1068 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1126

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1127 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1165

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1166 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1215

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1216 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1275

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1276 ERIGCGKGPSIQQAEMGAAMDALE 1299



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 852  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 911

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 912  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 971

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 972  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 1003

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1004 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1059

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1060 PNTDRQLIETSP 1071



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1113 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1171


>gi|374338458|ref|YP_005095172.1| ribonuclease III [Streptococcus macedonicus ACA-DC 198]
 gi|372284572|emb|CCF02857.1| Ribonuclease III [Streptococcus macedonicus ACA-DC 198]
          Length = 228

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 116/256 (45%), Gaps = 45/256 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY-----FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            K +      F+DK+ L  A TH SY      LN   +  +RLEFLGDA+L  LI+++L++
Sbjct: 7    KLQRDFGIVFEDKTLLKTAFTHTSYANEHRLLNISHN--ERLEFLGDAVLQLLISQYLFK 64

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ +RS +V     A  +   GF  F K L  G         K    N  T
Sbjct: 65   KYPKKPEGDLSKMRSVIVREESLAGFSRYCGFDEFIK-LGNGEE-------KSGGRNRDT 116

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
            +                      LGDLFE+  GA+ +D G+  + V K   ++M  ++E+
Sbjct: 117  I----------------------LGDLFEAFLGALLMDQGV--EAVKKFLNQVMIPQVEK 152

Query: 1156 LS---VSVPKSPIRELLELEPE---NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
             +   V   K+ ++ELL+   +   + R S     A  +   VTV +  +   +GIGR+ 
Sbjct: 153  GNFERVKDYKTTLQELLQGHGDVTIDYRVSNESGPAHAKVFEVTVYINDEAKSQGIGRSK 212

Query: 1210 CIAKCTAAKCALKHLK 1225
             +A+  AAK AL  L+
Sbjct: 213  KLAEQDAAKNALALLQ 228


>gi|305674324|ref|YP_003865996.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
 gi|305412568|gb|ADM37687.1| ribonuclease III [Bacillus subtilis subsp. spizizenii str. W23]
          Length = 249

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 75/257 (29%), Positives = 119/257 (46%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I+R 
Sbjct: 17   VEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISRF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   + +  +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEYVQRDGKGSLEYKITNEKGPAHNREFEAIVSLKGEPLGVGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.3 bits (103), Expect = 0.39,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISRFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|30263852|ref|NP_846229.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47529278|ref|YP_020627.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49186699|ref|YP_029951.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49478414|ref|YP_037910.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
            97-27]
 gi|165873286|ref|ZP_02217894.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167636662|ref|ZP_02394952.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|167642023|ref|ZP_02400254.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|170689645|ref|ZP_02880826.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|177655964|ref|ZP_02937116.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190565836|ref|ZP_03018755.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
 gi|196035867|ref|ZP_03103269.1| ribonuclease III [Bacillus cereus W]
 gi|196042325|ref|ZP_03109601.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|196047446|ref|ZP_03114658.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|218904979|ref|YP_002452813.1| ribonuclease III [Bacillus cereus AH820]
 gi|225865830|ref|YP_002751208.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227813243|ref|YP_002813252.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228916486|ref|ZP_04080052.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|228928897|ref|ZP_04091929.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
            4BA1]
 gi|228935163|ref|ZP_04097990.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
 gi|228947568|ref|ZP_04109858.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|229092891|ref|ZP_04224025.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|229123363|ref|ZP_04252567.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|229186089|ref|ZP_04313258.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|229599971|ref|YP_002868086.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|254683443|ref|ZP_05147303.1| ribonuclease III [Bacillus anthracis str. CNEVA-9066]
 gi|254721380|ref|ZP_05183169.1| ribonuclease III [Bacillus anthracis str. A1055]
 gi|254735887|ref|ZP_05193593.1| ribonuclease III [Bacillus anthracis str. Western North America
            USA6153]
 gi|254739520|ref|ZP_05197217.1| ribonuclease III [Bacillus anthracis str. Kruger B]
 gi|254751172|ref|ZP_05203211.1| ribonuclease III [Bacillus anthracis str. Vollum]
 gi|254756720|ref|ZP_05208749.1| ribonuclease III [Bacillus anthracis str. Australia 94]
 gi|376267744|ref|YP_005120456.1| Ribonuclease III [Bacillus cereus F837/76]
 gi|386737671|ref|YP_006210852.1| ribonuclease 3 [Bacillus anthracis str. H9401]
 gi|421507389|ref|ZP_15954309.1| ribonuclease III [Bacillus anthracis str. UR-1]
 gi|421639604|ref|ZP_16080195.1| ribonuclease III [Bacillus anthracis str. BF1]
 gi|423550402|ref|ZP_17526729.1| ribonuclease 3 [Bacillus cereus ISP3191]
 gi|38372420|sp|Q81WI8.1|RNC_BACAN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|81395098|sp|Q6HEW6.1|RNC_BACHK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|226735366|sp|B7JJT6.1|RNC_BACC0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|254807235|sp|C3P5Q0.1|RNC_BACAA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|254807236|sp|C3L778.1|RNC_BACAC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|254807237|sp|C1EP73.1|RNC_BACC3 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|30258496|gb|AAP27715.1| ribonuclease III [Bacillus anthracis str. Ames]
 gi|47504426|gb|AAT33102.1| ribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
 gi|49180626|gb|AAT56002.1| ribonuclease III [Bacillus anthracis str. Sterne]
 gi|49329970|gb|AAT60616.1| ribonuclease III [Bacillus thuringiensis serovar konkukian str.
            97-27]
 gi|164710971|gb|EDR16540.1| ribonuclease III [Bacillus anthracis str. A0488]
 gi|167510022|gb|EDR85437.1| ribonuclease III [Bacillus anthracis str. A0193]
 gi|167527913|gb|EDR90729.1| ribonuclease III [Bacillus anthracis str. A0442]
 gi|170666390|gb|EDT17172.1| ribonuclease III [Bacillus anthracis str. A0465]
 gi|172079908|gb|EDT65015.1| ribonuclease III [Bacillus anthracis str. A0174]
 gi|190562755|gb|EDV16721.1| ribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
 gi|195991516|gb|EDX55482.1| ribonuclease III [Bacillus cereus W]
 gi|196021754|gb|EDX60449.1| ribonuclease III [Bacillus cereus 03BB108]
 gi|196026847|gb|EDX65478.1| ribonuclease III [Bacillus cereus NVH0597-99]
 gi|218539426|gb|ACK91824.1| ribonuclease III [Bacillus cereus AH820]
 gi|225790989|gb|ACO31206.1| ribonuclease III [Bacillus cereus 03BB102]
 gi|227006213|gb|ACP15956.1| ribonuclease III [Bacillus anthracis str. CDC 684]
 gi|228597265|gb|EEK54916.1| Ribonuclease 3 [Bacillus cereus BGSC 6E1]
 gi|228660139|gb|EEL15775.1| Ribonuclease 3 [Bacillus cereus 95/8201]
 gi|228690513|gb|EEL44296.1| Ribonuclease 3 [Bacillus cereus Rock3-42]
 gi|228812088|gb|EEM58419.1| Ribonuclease 3 [Bacillus thuringiensis serovar monterrey BGSC 4AJ1]
 gi|228824528|gb|EEM70333.1| Ribonuclease 3 [Bacillus thuringiensis serovar andalousiensis BGSC
            4AW1]
 gi|228830704|gb|EEM76309.1| Ribonuclease 3 [Bacillus thuringiensis serovar pondicheriensis BGSC
            4BA1]
 gi|228843065|gb|EEM88147.1| Ribonuclease 3 [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1]
 gi|229264379|gb|ACQ46016.1| ribonuclease III [Bacillus anthracis str. A0248]
 gi|364513544|gb|AEW56943.1| Ribonuclease III [Bacillus cereus F837/76]
 gi|384387523|gb|AFH85184.1| Ribonuclease 3 [Bacillus anthracis str. H9401]
 gi|401190018|gb|EJQ97068.1| ribonuclease 3 [Bacillus cereus ISP3191]
 gi|401822523|gb|EJT21673.1| ribonuclease III [Bacillus anthracis str. UR-1]
 gi|403393269|gb|EJY90514.1| ribonuclease III [Bacillus anthracis str. BF1]
          Length = 245

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|155030236|ref|NP_001093882.1| ribonuclease 3 isoform 2 [Homo sapiens]
 gi|114600827|ref|XP_001157762.1| PREDICTED: ribonuclease 3 isoform 10 [Pan troglodytes]
 gi|426385040|ref|XP_004059046.1| PREDICTED: ribonuclease 3 isoform 1 [Gorilla gorilla gorilla]
 gi|410219536|gb|JAA06987.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410267414|gb|JAA21673.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300308|gb|JAA28754.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410355699|gb|JAA44453.1| drosha, ribonuclease type III [Pan troglodytes]
          Length = 1337

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1002 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1061

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1062 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1120

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1121 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1159

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1160 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1209

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1210 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1269

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1270 ERIGCGKGPSIQQAEMGAAMDALE 1293



 Score = 46.6 bits (109), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 846  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 905

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 906  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 965

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 966  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 997

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 998  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1053

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1054 PNTDRQLIETSP 1065



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1107 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1165


>gi|313224789|emb|CBY20581.1| unnamed protein product [Oikopleura dioica]
          Length = 538

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/323 (28%), Positives = 142/323 (43%), Gaps = 55/323 (17%)

Query: 925  DKSIADCVEALIGAYLIECG--PRGALLFMS----------WLGLKVIPPVTN-PESKHL 971
            + ++A+C EA++GA  ++ G  P   LL             WL     P     P+    
Sbjct: 141  NNALANCFEAVLGAIYMDGGLEPVRQLLARVLFDDKALQRVWLDFPAHPLQQEYPDGDRA 200

Query: 972  ---SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDY 1027
               S  +L    + EE +  +FK+   L +A+T  +   N +T  + QRLEFLGDAI ++
Sbjct: 201  QIESSKVLKRCAELEELLGVKFKNIRLLAKALTLKNVKYNDITKGHNQRLEFLGDAICNF 260

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            L   +L++    H  G LT LR  +V     A +A ++G   F          VI R  +
Sbjct: 261  LAAEYLFKHFPLHHEGHLTLLRCTMVGAPTQALVAQQIGLDKF----------VISR--Q 308

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG-MSLDTVWKV-Y 1145
              + +     Q                  K L DL ES  GA+++D G +++D   KV +
Sbjct: 309  SLSHDKMGWKQ------------------KILADLMESFIGALFIDRGIIAVDVFMKVAF 350

Query: 1146 YEIMKSEIERLSVSVPKSPIRE-LLELEPENARFSKPE---KLADGRRVRVTVEVFGKGS 1201
            Y  +K  I     + PKS +++  L L PE      PE     ++  ++R  VEVF +G 
Sbjct: 351  YPRLKHFIMSQVWNDPKSCLQQCCLTLRPEEGTPDLPEYRTTTSNSSKMRYRVEVFFRGE 410

Query: 1202 YKGIGRNYCI--AKCTAAKCALK 1222
              G G    I  A+  AA+ AL+
Sbjct: 411  RIGEGHGPSIQLAEKFAARKALE 433



 Score = 53.5 bits (127), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 40/155 (25%), Positives = 72/155 (46%), Gaps = 34/155 (21%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +R EFLGDA+L ++++  ++        G L+ LR ALV N+  A+LA +L    +F   
Sbjct: 70   ERPEFLGDAVLGFVVSVSIFHLFPNLGEGALSMLRCALVCNVHLAALAQKLTLEDYF--- 126

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                                      Y+   +  + ED+    AL + FE+V GAIY+D 
Sbjct: 127  -------------------------VYIHSQDLAKREDLN--NALANCFEAVLGAIYMDG 159

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPIRE 1167
            G  L+ V ++   ++     ++R+ +  P  P+++
Sbjct: 160  G--LEPVRQLLARVLFDDKALQRVWLDFPAHPLQQ 192


>gi|155030234|ref|NP_037367.3| ribonuclease 3 isoform 1 [Homo sapiens]
 gi|426385042|ref|XP_004059047.1| PREDICTED: ribonuclease 3 isoform 2 [Gorilla gorilla gorilla]
 gi|20139357|sp|Q9NRR4.2|RNC_HUMAN RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III; AltName:
            Full=p241
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|52141634|ref|YP_085190.1| ribonuclease III [Bacillus cereus E33L]
 gi|81686565|sp|Q636H7.1|RNC_BACCZ RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|51975103|gb|AAU16653.1| ribonuclease III [Bacillus cereus E33L]
          Length = 245

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGGLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.0 bits (92), Expect = 8.6,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGGLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|345798933|ref|XP_536514.3| PREDICTED: ribonuclease 3 isoform 1 [Canis lupus familiaris]
          Length = 1336

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1001 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1060

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1061 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1119

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1120 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1158

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1159 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1208

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1209 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1268

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1269 ERIGCGKGPSIQQAEMGAAMDALE 1292



 Score = 46.6 bits (109), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 845  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 904

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 905  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 964

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 965  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 996

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 997  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1052

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1053 PNTDRQLIETSP 1064



 Score = 40.8 bits (94), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1106 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1164


>gi|332821657|ref|XP_001157472.2| PREDICTED: ribonuclease 3 isoform 5 [Pan troglodytes]
 gi|410219538|gb|JAA06988.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410267416|gb|JAA21674.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300306|gb|JAA28753.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410300310|gb|JAA28755.1| drosha, ribonuclease type III [Pan troglodytes]
 gi|410355701|gb|JAA44454.1| drosha, ribonuclease type III [Pan troglodytes]
          Length = 1374

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.093,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|296194852|ref|XP_002745135.1| PREDICTED: ribonuclease 3 isoform 2 [Callithrix jacchus]
          Length = 1337

 Score = 75.5 bits (184), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1002 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1061

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1062 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1120

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1121 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1159

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1160 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1209

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1210 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1269

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1270 ERIGCGKGPSIQQAEMGAAMDALE 1293



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 846  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 905

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 906  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 965

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 966  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 997

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 998  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1053

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1054 PNTDRQLIETSP 1065



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1107 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1165


>gi|386781115|ref|NP_001248086.1| ribonuclease 3 [Macaca mulatta]
 gi|380783731|gb|AFE63741.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|380783733|gb|AFE63742.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|383412671|gb|AFH29549.1| ribonuclease 3 isoform 2 [Macaca mulatta]
 gi|384943204|gb|AFI35207.1| ribonuclease 3 isoform 2 [Macaca mulatta]
          Length = 1337

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1002 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1061

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1062 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1120

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1121 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1159

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1160 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1209

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1210 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1269

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1270 ERIGCGKGPSIQQAEMGAAMDALE 1293



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 846  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 905

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 906  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 965

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 966  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 997

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 998  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1053

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1054 PNTDRQLIETSP 1065



 Score = 40.8 bits (94), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1107 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1165


>gi|307448396|pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer Formation
            Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
            Campylobacter Jejuni
 gi|307448398|pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer Formation
            Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
            Campylobacter Jejuni
          Length = 144

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 32/159 (20%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            +K E+S+ Y FKDK+ L+ A+TH S+   +  +  +RLEFLGDA+LD ++  +L+     
Sbjct: 3    EKLEQSLTYEFKDKNLLIHALTHKSFXKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAK 60

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             + G L+ LR+ALVN   FA +A  L    F               + +  EN+      
Sbjct: 61   DAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN------ 101

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                          E P  L D  E++ GAI+L++G   
Sbjct: 102  -----------GGKEKPSILSDALEAIIGAIHLEAGFEF 129


>gi|296194850|ref|XP_002745134.1| PREDICTED: ribonuclease 3 isoform 1 [Callithrix jacchus]
          Length = 1374

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|338718922|ref|XP_003363908.1| PREDICTED: ribonuclease 3 [Equus caballus]
          Length = 1337

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1002 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1061

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1062 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1120

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1121 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1159

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1160 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1209

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1210 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1269

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1270 ERIGCGKGPSIQQAEMGAAMDALE 1293



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 846  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 905

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 906  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 965

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 966  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 997

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 998  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1053

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1054 PNTDRQLIETSP 1065



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1107 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1165


>gi|441614801|ref|XP_003274996.2| PREDICTED: ribonuclease 3 [Nomascus leucogenys]
          Length = 1024

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 689  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 748

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 749  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 807

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 808  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 846

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 847  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 896

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 897  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 956

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 957  ERIGCGKGPSIQQAEMGAAMDALE 980



 Score = 46.6 bits (109), Expect = 0.099,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 533  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 592

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 593  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 652

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 653  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 684

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 685  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 740

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 741  PNTDRQLIETSP 752



 Score = 41.2 bits (95), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 794 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 852


>gi|419542137|ref|ZP_14081268.1| ribonuclease III [Campylobacter coli 2548]
 gi|380523896|gb|EIA49530.1| ribonuclease III [Campylobacter coli 2548]
          Length = 224

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+    EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSAAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|119631172|gb|EAX10767.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
 gi|119631173|gb|EAX10768.1| ribonuclease III, nuclear, isoform CRA_a [Homo sapiens]
          Length = 1349

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1014 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1073

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1074 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1132

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1133 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1171

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1172 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1221

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1222 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1281

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1282 ERIGCGKGPSIQQAEMGAAMDALE 1305



 Score = 46.2 bits (108), Expect = 0.10,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 858  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 917

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 918  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 977

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 978  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1009

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1010 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1065

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1066 PNTDRQLIETSP 1077



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1119 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1177


>gi|403290285|ref|XP_003936253.1| PREDICTED: ribonuclease 3 [Saimiri boliviensis boliviensis]
          Length = 1374

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|301769069|ref|XP_002919953.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3-like [Ailuropoda
            melanoleuca]
          Length = 1369

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1034 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1093

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1094 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1152

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1153 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1191

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1192 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1241

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1242 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1301

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1302 ERIGCGKGPSIQQAEMGAAMDALE 1325



 Score = 46.6 bits (109), Expect = 0.097,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 878  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 937

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 938  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 997

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 998  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1029

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1030 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1085

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1086 PNTDRQLIETSP 1097



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1139 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1197


>gi|229019045|ref|ZP_04175885.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|423389844|ref|ZP_17367070.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
 gi|423418244|ref|ZP_17395333.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
 gi|228742247|gb|EEL92407.1| Ribonuclease 3 [Bacillus cereus AH1273]
 gi|401106517|gb|EJQ14478.1| ribonuclease 3 [Bacillus cereus BAG3X2-1]
 gi|401641935|gb|EJS59652.1| ribonuclease 3 [Bacillus cereus BAG1X1-3]
          Length = 245

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|297675037|ref|XP_002815506.1| PREDICTED: ribonuclease 3 [Pongo abelii]
          Length = 1374

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 46.6 bits (109), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1003 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1034

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1035 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|395840340|ref|XP_003793018.1| PREDICTED: ribonuclease 3 [Otolemur garnettii]
          Length = 1345

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1010 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1069

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1070 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1128

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1129 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1167

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1168 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1217

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1218 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1277

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1278 ERIGCGKGPSIQQAEMGAAMDALE 1301



 Score = 46.6 bits (109), Expect = 0.094,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 854  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 913

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 914  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 973

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 974  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1005

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1006 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1061

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1062 PNTDRQLIETSP 1073



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1115 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1173


>gi|65321177|ref|ZP_00394136.1| COG0571: dsRNA-specific ribonuclease [Bacillus anthracis str. A2012]
 gi|118479071|ref|YP_896222.1| ribonuclease III [Bacillus thuringiensis str. Al Hakam]
 gi|118418296|gb|ABK86715.1| RNAse III [Bacillus thuringiensis str. Al Hakam]
          Length = 262

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 34   EAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 93

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 94   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 124

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 125  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 181

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 182  NEGAFSHVMDYKSQLQELIQ 201



 Score = 40.4 bits (93), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 76  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 135

Query: 843 FE 844
            E
Sbjct: 136 GE 137


>gi|423612066|ref|ZP_17587927.1| ribonuclease 3 [Bacillus cereus VD107]
 gi|401247073|gb|EJR53417.1| ribonuclease 3 [Bacillus cereus VD107]
          Length = 245

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|229031479|ref|ZP_04187479.1| Ribonuclease 3 [Bacillus cereus AH1271]
 gi|228729768|gb|EEL80748.1| Ribonuclease 3 [Bacillus cereus AH1271]
          Length = 245

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|119631174|gb|EAX10769.1| ribonuclease III, nuclear, isoform CRA_b [Homo sapiens]
          Length = 1120

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 785  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 844

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 845  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 903

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 904  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 942

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 943  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 992

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 993  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1052

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1053 ERIGCGKGPSIQQAEMGAAMDALE 1076



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 629  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 688

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 689  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 748

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 749  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 780

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 781  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 836

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 837  PNTDRQLIETSP 848



 Score = 41.2 bits (95), Expect = 3.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 890 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 948


>gi|86152963|ref|ZP_01071168.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|167006173|ref|ZP_02271931.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 81-176]
 gi|419617831|ref|ZP_14151397.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
 gi|419654145|ref|ZP_14185094.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
 gi|419665962|ref|ZP_14196014.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
 gi|419668873|ref|ZP_14198676.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
 gi|419687215|ref|ZP_14215623.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
 gi|419691430|ref|ZP_14219550.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
 gi|85843848|gb|EAQ61058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|380596428|gb|EIB17120.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 129-258]
 gi|380631711|gb|EIB49874.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-872]
 gi|380642199|gb|EIB59482.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-7]
 gi|380648273|gb|EIB65135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-11]
 gi|380662839|gb|EIB78523.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1798]
 gi|380672387|gb|EIB87559.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1928]
          Length = 224

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLERSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|451850832|gb|EMD64133.1| hypothetical protein COCSADRAFT_142297 [Cochliobolus sativus ND90Pr]
          Length = 1435

 Score = 75.1 bits (183), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 154/389 (39%), Gaps = 94/389 (24%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD  LK+  ++ L  T+  + EG L+  +SK VSN  L +    K   E ++  
Sbjct: 970  QRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKSKLVSNGYLARAALAKGLDEFILYK 1029

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
            +F           + P+Y+   L     PA                              
Sbjct: 1030 RF-------TGAKWKPRYVSQVLAITNPPA------------------------------ 1052

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA-YLIECGPRGALLFMSWLGLKVI 960
                              +     K IAD +E+LIGA Y++    +      + L L+  
Sbjct: 1053 ------------------KQEKSSKLIADVIESLIGASYVVGGFSKAFACVKALLPLEDW 1094

Query: 961  PPVTNPESKHLSDVLLD---------GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT 1011
             P+  P++   +D L +         G    E  + + F +K+ LL+A+TH + F    T
Sbjct: 1095 MPI--PQA---NDTLYNAAPEQDSVMGVIPVENLVGHIFNNKAMLLEALTHPT-FRGLNT 1148

Query: 1012 DC-YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
             C Y+R EFLGDA+LDY++++ LY          +  +R+A+VN    A           
Sbjct: 1149 HCSYEREEFLGDAVLDYIVSKRLYSHRPELPHHKMHGIRTAMVNASFLAYSMFETTVEEI 1208

Query: 1071 FKH---LSPGLHE-VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV----------- 1115
            F +   L P  H+  + +F++    ++  +++   +        +  E            
Sbjct: 1209 FTNKETLQPETHQRALWQFLR-STSHELVMSRNLAIRRHSEARIQITEALQHDARFPWHA 1267

Query: 1116 ------PKALGDLFESVAGAIYLDSGMSL 1138
                  PK L D+ ES+ GA+Y+DS  SL
Sbjct: 1268 LSLTDPPKFLSDIVESMIGALYIDSHGSL 1296



 Score = 47.4 bits (111), Expect = 0.055,   Method: Compositional matrix adjust.
 Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 13/124 (10%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD IL ++ + HL         G LT  +S LV+N   A  A+  G   F   
Sbjct: 969  YQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKSKLVSNGYLARAALAKGLDEFI-- 1026

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   + +RF   + +  +       ++      A+  +  K + D+ ES+ GA Y+ 
Sbjct: 1027 -------LYKRFTGAKWKPRYVSQ----VLAITNPPAKQEKSSKLIADVIESLIGASYVV 1075

Query: 1134 SGMS 1137
             G S
Sbjct: 1076 GGFS 1079


>gi|229162785|ref|ZP_04290742.1| Ribonuclease 3 [Bacillus cereus R309803]
 gi|228620667|gb|EEK77536.1| Ribonuclease 3 [Bacillus cereus R309803]
          Length = 245

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|57238646|ref|YP_179777.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|384443998|ref|YP_005660250.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
 gi|81353160|sp|Q5HSF8.1|RNC_CAMJR RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|57167450|gb|AAW36229.1| ribonuclease III [Campylobacter jejuni RM1221]
 gi|315059085|gb|ADT73414.1| Ribonuclease III [Campylobacter jejuni subsp. jejuni S3]
          Length = 224

 Score = 75.1 bits (183), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLERSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGREKPSILSDALEAIIGAIHLEAGFEF 130


>gi|312135000|ref|YP_004002338.1| ribonuclease iii [Caldicellulosiruptor owensensis OL]
 gi|311775051|gb|ADQ04538.1| ribonuclease III [Caldicellulosiruptor owensensis OL]
          Length = 222

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 121/242 (50%), Gaps = 37/242 (15%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            ++ E+++ Y+F+DK+ L  A+TH S   ++  +CY+RLEFLGDA L+  ++++LY     
Sbjct: 2    EEIEKALGYKFEDKNLLRLALTHKSA-THSNKNCYERLEFLGDAALELAVSKYLYVYFPE 60

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             S G LT++R+A+V +   + +A +L   +   H+  G  E +++F              
Sbjct: 61   LSEGELTNIRAAVVCSQTLSKVAEKLNLKN---HIIFGKREKMEKFY------------- 104

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                          E    L D+ E++ GAI+++SG   DTV K+   ++K  I++    
Sbjct: 105  --------------ENKSILADVLEALFGAIFIESG--FDTVEKIIVNLLKPYIQKAVAG 148

Query: 1160 VP----KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCT 1215
                  K+ ++E+++ E +     K  ++ + +  +  + + GK   +G G +   A+  
Sbjct: 149  KLFYDYKTKLQEIVQREGQKKIVYKDCEILEKKYFKSELFIEGKKVSEGYGTSKKEAQQD 208

Query: 1216 AA 1217
            AA
Sbjct: 209  AA 210



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+ A++ +LY  +P + EG+L+++R+  V +  L K+ ++      +I  K
Sbjct: 37  RLEFLGDAALELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK 96

Query: 843 FEPRDNWLPPGYFVPKYLE----TALIEAGF 869
            E  + +      +   LE       IE+GF
Sbjct: 97  REKMEKFYENKSILADVLEALFGAIFIESGF 127


>gi|148925776|ref|ZP_01809464.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145845786|gb|EDK22877.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 229

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 80/164 (48%), Gaps = 33/164 (20%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            ++   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+
Sbjct: 5    MMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLF 61

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                  + G L+ LR+ALVN   FA +A  L    F               + +  EN+ 
Sbjct: 62   HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN- 107

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                      G+       E P  L D  E++ GAI+L++G   
Sbjct: 108  ---------GGK-------EKPSILSDALEAIIGAIHLEAGFEF 135


>gi|34784428|gb|AAH57687.1| Rnasen protein, partial [Mus musculus]
          Length = 942

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 607  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 666

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 667  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 725

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 726  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 764

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 765  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 814

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 815  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 874

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 875  ERIGCGKGPSIQQAEMGAAMDALE 898



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 451  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 510

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 511  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 570

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 571  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 602

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 603  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 658

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 659  PNTDRQLIETSP 670



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 712 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 770


>gi|194306545|ref|NP_081075.3| ribonuclease 3 [Mus musculus]
 gi|194328670|ref|NP_001123621.1| ribonuclease 3 [Mus musculus]
 gi|81882947|sp|Q5HZJ0.1|RNC_MOUSE RecName: Full=Ribonuclease 3; AltName: Full=Protein Drosha; AltName:
            Full=Ribonuclease III; Short=RNase III
 gi|57242920|gb|AAH88999.1| Rnasen protein [Mus musculus]
 gi|74184402|dbj|BAE25729.1| unnamed protein product [Mus musculus]
 gi|74215950|dbj|BAE28629.1| unnamed protein product [Mus musculus]
          Length = 1373

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1038 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1097

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1098 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1156

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1157 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1195

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1196 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1245

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1246 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1305

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1306 ERIGCGKGPSIQQAEMGAAMDALE 1329



 Score = 46.6 bits (109), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 882  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 941

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 942  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1001

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1002 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1033

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1034 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1089

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1090 PNTDRQLIETSP 1101



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1143 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1201


>gi|419760458|ref|ZP_14286737.1| ribonuclease III [Thermosipho africanus H17ap60334]
 gi|407514561|gb|EKF49376.1| ribonuclease III [Thermosipho africanus H17ap60334]
          Length = 230

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 44/175 (25%), Positives = 84/175 (48%), Gaps = 30/175 (17%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            +K E  + YRF+++  LL A+TH S+        Y+RLEFLGDA++D L++  LY++   
Sbjct: 7    EKLENKLGYRFRNEELLLTALTHTSFAHENNVKSYERLEFLGDAVIDLLLSTILYQEFTN 66

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             + GT+  +++A+ +  I   + + +G  ++                             
Sbjct: 67   LNEGTMAQIKAAVASEDILYEIGIDIGIENYI---------------------------- 98

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
             +L +GE       +    + D+ E++  AIY+DS   L+ + K++++  K  IE
Sbjct: 99   -FLGKGELKSGGKYK-KSIIADVVEALVAAIYVDSKKDLNVIEKIFHDTFKRYIE 151


>gi|37994704|gb|AAH60265.1| Rnasen protein, partial [Mus musculus]
          Length = 1231

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 896  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 955

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 956  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1014

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1015 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1053

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1054 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1103

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1104 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1163

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1164 ERIGCGKGPSIQQAEMGAAMDALE 1187



 Score = 46.6 bits (109), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 740  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 799

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 800  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 859

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 860  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 891

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 892  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 947

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 948  PNTDRQLIETSP 959



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1001 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1059


>gi|354479102|ref|XP_003501752.1| PREDICTED: ribonuclease 3-like [Cricetulus griseus]
 gi|344245508|gb|EGW01612.1| Ribonuclease 3 [Cricetulus griseus]
          Length = 1372

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1037 AMANCFEALIGAVYLEGSLEEARQLFGRLLFNDPDLREVWLHYPLHPLQLQEPNTDRQLI 1096

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1097 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1155

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1156 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1194

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1195 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1244

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1245 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1304

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1305 ERIGCGKGPSIQQAEMGAAMDALE 1328



 Score = 46.6 bits (109), Expect = 0.096,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 96/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 881  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 940

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 941  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1000

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1001 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1032

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + +  P  P+    
Sbjct: 1033 --DLRHAMANCFEALIGAVYLEG--SLEEARQLFGRLLFNDPDLREVWLHYPLHPLQLQE 1088

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1089 PNTDRQLIETSP 1100



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1142 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1200


>gi|423452850|ref|ZP_17429703.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
 gi|401139409|gb|EJQ46971.1| ribonuclease 3 [Bacillus cereus BAG5X1-1]
          Length = 245

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|170709347|ref|ZP_02899762.1| ribonuclease III [Bacillus anthracis str. A0389]
 gi|170125742|gb|EDS94654.1| ribonuclease III [Bacillus anthracis str. A0389]
          Length = 245

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGAFYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 7.0,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|328774462|gb|EGF84499.1| hypothetical protein BATDEDRAFT_22607 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 334

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL  +HLY+     +PG L+ LR+ LV N   A +++++G   
Sbjct: 11   LGSMFQRLEFLGDAVLSYLAMQHLYKITPPLNPGGLSKLRAELVCNQFLACVSIQIGLVK 70

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+   L        +        +    PK  GD
Sbjct: 71   YIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGD 130

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 131  VYESMLGAVFVDSQFDIHCVQSMF 154


>gi|423522321|ref|ZP_17498794.1| ribonuclease 3 [Bacillus cereus HuA4-10]
 gi|423558588|ref|ZP_17534890.1| ribonuclease 3 [Bacillus cereus MC67]
 gi|401175015|gb|EJQ82218.1| ribonuclease 3 [Bacillus cereus HuA4-10]
 gi|401191856|gb|EJQ98878.1| ribonuclease 3 [Bacillus cereus MC67]
          Length = 245

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|423483439|ref|ZP_17460129.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
 gi|401140990|gb|EJQ48545.1| ribonuclease 3 [Bacillus cereus BAG6X1-2]
          Length = 245

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFSDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|228940937|ref|ZP_04103496.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|228966797|ref|ZP_04127841.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|365159374|ref|ZP_09355555.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
 gi|228792896|gb|EEM40454.1| Ribonuclease 3 [Bacillus thuringiensis serovar sotto str. T04001]
 gi|228818773|gb|EEM64839.1| Ribonuclease 3 [Bacillus thuringiensis serovar berliner ATCC 10792]
 gi|363625372|gb|EHL76413.1| ribonuclease 3 [Bacillus sp. 7_6_55CFAA_CT2]
          Length = 225

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/195 (31%), Positives = 94/195 (48%), Gaps = 38/195 (19%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYEDER 1038
            F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L++   
Sbjct: 2    FQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYP 61

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              S G LT LR+A+V                      P L     RF      N+ +   
Sbjct: 62   TMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NELSFGS 92

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
               L +GE +     E P  L D+FE+  GA+YLD G  L+TVW+   EI+  +I   + 
Sbjct: 93   LVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWEFLKEIVYPKINEGAF 149

Query: 1159 SVP---KSPIRELLE 1170
            S     KS ++EL++
Sbjct: 150  SHVMDYKSQLQELIQ 164



 Score = 40.8 bits (94), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 38  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 97

Query: 842 KFE 844
           K E
Sbjct: 98  KGE 100


>gi|404501514|ref|NP_001101125.2| ribonuclease 3 [Rattus norvegicus]
 gi|392345448|ref|XP_003749268.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
          Length = 1373

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1038 AMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1097

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1098 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1156

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1157 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1195

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1196 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1245

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1246 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1305

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1306 ERIGCGKGPSIQQAEMGAAMDALE 1329



 Score = 45.8 bits (107), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 84/205 (40%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 882  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 941

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 942  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1001

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 1002 IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1033

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGM 1136
              ++  A+ + FE++ GA+YL+  +
Sbjct: 1034 --DLRHAMANCFEALIGAVYLEGTL 1056



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1143 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1201


>gi|386285114|ref|ZP_10062332.1| ribonuclease III [Sulfurovum sp. AR]
 gi|385343967|gb|EIF50685.1| ribonuclease III [Sulfurovum sp. AR]
          Length = 223

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 47/165 (28%), Positives = 83/165 (50%), Gaps = 39/165 (23%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRH 1032
            ++ + + EE +NY FK+K  +++A+TH SY   + N      +RLEFLGDA+LD ++  +
Sbjct: 1    MNDYSQLEERLNYTFKNKQLIIEALTHKSYKKPYNN------ERLEFLGDAVLDLIVGEY 54

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+      + G L+ +R++LVN   F  LA +L    +              ++ +  EN
Sbjct: 55   LFSKFPNSNEGILSKIRASLVNESGFTLLARKLDLGSYI-------------YLSLAEEN 101

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
            +   N+                 P  L + FE++ GAIYL++G++
Sbjct: 102  NNGRNK-----------------PSLLSNAFEAIIGAIYLEAGLA 129


>gi|312127786|ref|YP_003992660.1| ribonuclease iii [Caldicellulosiruptor hydrothermalis 108]
 gi|311777805|gb|ADQ07291.1| ribonuclease III [Caldicellulosiruptor hydrothermalis 108]
          Length = 222

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/242 (25%), Positives = 123/242 (50%), Gaps = 37/242 (15%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            ++ E+++ Y+FKDK+ L  A+TH S   ++  +CY+RLEFLGDA L+ +++++L+ +   
Sbjct: 2    EEIEKALGYKFKDKNLLRLALTHKSA-THSNKNCYERLEFLGDAALELVVSKYLFVNFPD 60

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             S G LT++R+A+V +   + +A +L   +   H+  G  E +++F     EN       
Sbjct: 61   LSEGELTNIRAAVVCSQTLSEVAEKLNLKN---HIIFGKREKMEKF----HEN------- 106

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                               L D+ E++ GAI+++SG   D + K+   ++K  I++    
Sbjct: 107  ----------------KSILADVLEAIFGAIFIESG--FDKLEKIIVNLLKPYIQKAVAG 148

Query: 1160 VP----KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCT 1215
                  K+ ++E+++ E +     K  ++ + +  +  + V GK   +G G +   A+  
Sbjct: 149  KLFYDYKTKLQEIVQREGKKKIVYKDCEIIEKKYFKSELFVEGKKVSEGYGTSKKEAQQD 208

Query: 1216 AA 1217
            AA
Sbjct: 209  AA 210


>gi|7022183|dbj|BAA91511.1| unnamed protein product [Homo sapiens]
          Length = 769

 Score = 74.7 bits (182), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 434  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 493

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 494  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 552

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 553  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 591

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 592  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 641

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 642  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 701

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 702  ERIGCGKGPSIQQAEMGAAMDALE 725



 Score = 46.2 bits (108), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 361  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 412

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 413  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 450

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 451  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 497



 Score = 40.8 bits (94), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 539 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 597


>gi|423470063|ref|ZP_17446807.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
 gi|402437315|gb|EJV69339.1| ribonuclease 3 [Bacillus cereus BAG6O-2]
          Length = 245

 Score = 74.3 bits (181), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.8,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|291395193|ref|XP_002714143.1| PREDICTED: ribonuclease III, nuclear [Oryctolagus cuniculus]
          Length = 1338

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1003 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1062

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1063 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1121

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1122 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1160

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1161 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1210

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1211 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1270

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1271 ERIGCGKGPSIQQAEMGAAMDALE 1294



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 847  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 906

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 907  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 966

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 967  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 998

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 999  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1054

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1055 PNTDRQLIETSP 1066



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1108 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1166


>gi|29123082|gb|AAO65849.1| ribonuclease III [Mus musculus]
          Length = 1021

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 686  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPGLREVWLNYPLHPLQLQEPNTDRQLI 745

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 746  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 804

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 805  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 843

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 844  ---------QEYAVTNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 893

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 894  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 953

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 954  ERIGCGKGPSIQQAEMGAAMDALE 977



 Score = 46.2 bits (108), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 98/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 530  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 589

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 590  NTLINIVSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 649

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 650  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 681

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE--IERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++ ++  +  + ++ P  P+    
Sbjct: 682  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPGLREVWLNYPLHPLQLQE 737

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 738  PNTDRQLIETSP 749



 Score = 40.8 bits (94), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 791 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 840


>gi|302422698|ref|XP_003009179.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
 gi|261352325|gb|EEY14753.1| RNase3 domain-containing protein [Verticillium albo-atrum VaMs.102]
          Length = 1510

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 99/239 (41%), Gaps = 59/239 (24%)

Query: 921  HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFD 980
            HS+ DKSIAD  EA+IGA  +     G                                 
Sbjct: 1198 HSLADKSIADVCEAMIGASYLSYADEG--------------------------------- 1224

Query: 981  KFEESINYRFKDKSYLLQAMTHASY--FLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
                + +  FK  + L  A  H SY     ++ + YQRLEFLGDA+LD +    L+    
Sbjct: 1225 ----NFDMAFKSPALLRSAFKHPSYPRQFESVPN-YQRLEFLGDALLDMVCVDFLFRKFP 1279

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN------ 1092
               P  LT+ + A+V+N    SL+V LGF+    H S  +   I+ +V            
Sbjct: 1280 DADPQWLTEHKMAMVSNHFLGSLSVELGFYRRVLHFSGVMANQIKDYVDALTHARQEAEA 1339

Query: 1093 ----DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
                   ++Q+Y+L             PK L D+ E+  GAI++DSG +   V + ++E
Sbjct: 1340 AAQISGVISQDYWL--------NVQHPPKFLSDVVEAYIGAIFVDSGYNYSQV-QAFFE 1389



 Score = 49.7 bits (117), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 70/323 (21%), Positives = 129/323 (39%), Gaps = 58/323 (17%)

Query: 23  LAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYEL 82
           L+P   +S I  +    + C ++LP  SP+  SV+G     K  A   AA E C  L + 
Sbjct: 687 LSPSYMVSLIGSE----YICEVQLPSRSPI-LSVSGTLQKNKAEARCSAAFEMCMKLIKG 741

Query: 83  KELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVN 142
             + N L P     +    N    +           S+++R  Y+ R+     + R   +
Sbjct: 742 GFISNHLQPTFARKLPAMRNARLAI-----------SSEKRDRYNMRVKPEVWSRRGPAS 790

Query: 143 TPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI-FTRCGE 201
           +   L+   +KL  P        G    P     Q LA+LT + +P++   P+ F  CG 
Sbjct: 791 S---LFLTVLKLRAP--------GALNRPS----QPLALLTREVLPELPGVPLFFGNCGR 835

Query: 202 VEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSD 261
               +  + K + L E  L +  +F   +F  +     +  +++   ++  YF+ P   D
Sbjct: 836 SIAEVISVVKPMHLDEIRLDSIRVFTLRIFKDI-----FSKVYESQVADLPYFLAPAAHD 890

Query: 262 SEQ---------IVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRN 312
                        +IDW  + L  E     ++ +P  E  +  F ++KF   V+ P+  +
Sbjct: 891 HSHEFSPNEDPGSLIDWNHLMLTKE-----VEYLPWDEDHSPSFYQNKF---VIDPYTGS 942

Query: 313 QFEPTYFYVAEIMTNVHPRSMFP 335
           +      ++  I T++ P  + P
Sbjct: 943 R----KLFLRGIRTDLKPTDLVP 961



 Score = 48.1 bits (113), Expect = 0.033,   Method: Compositional matrix adjust.
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 5/86 (5%)

Query: 768  DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
            DFQ  + N+     +RLE +GD FLK A TI L+   P+ +E +    R   + N NLF 
Sbjct: 1103 DFQAGMGNNY----ERLEFLGDCFLKMATTIALFTRIPDSNEFEYHVERMLLICNQNLFN 1158

Query: 828  LGKQKVFGESMIATKFEPRDNWLPPG 853
            +  +K   E + + +F+ R +W P G
Sbjct: 1159 VALKKNLQEYIRSKQFD-RRSWYPQG 1183


>gi|222824476|ref|YP_002576050.1| ribonuclease III [Campylobacter lari RM2100]
 gi|222539697|gb|ACM64798.1| ribonuclease III [Campylobacter lari RM2100]
          Length = 222

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 54/158 (34%), Positives = 81/158 (51%), Gaps = 39/158 (24%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            K +E +NY FK++  L++A+TH SY   + N      +RLEFLGDA++D ++   L+   
Sbjct: 4    KLQERLNYHFKNEQLLIEALTHKSYKKPYNN------ERLEFLGDAVMDLVVGEFLFFKF 57

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
            +  S G L+ LR+ALVN   FA+LA +L            L E I  F+ +  EN+   N
Sbjct: 58   QKESEGNLSKLRAALVNEKSFANLAQKL-----------DLGECI--FMSIAEENNDGRN 104

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
            +                 P  L D FE++ GA+YL+ G
Sbjct: 105  K-----------------PSILSDAFEALMGAMYLEIG 125


>gi|307722018|ref|YP_003893158.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
 gi|306980111|gb|ADN10146.1| RNAse III [Sulfurimonas autotrophica DSM 16294]
          Length = 227

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 72/258 (27%), Positives = 114/258 (44%), Gaps = 50/258 (19%)

Query: 982  FEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             EE + Y FKDK  +++A+TH SY   + N      +RLEFLGDA+LD ++  +L+   R
Sbjct: 8    LEEKLGYEFKDKKLIIEALTHKSYKQPYDN------ERLEFLGDAVLDLVVGEYLFRKFR 61

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
                G L+ +R++LVN   F  LA  L       HL                        
Sbjct: 62   TSDEGKLSKIRASLVNETGFDKLARAL-------HLG----------------------- 91

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            +Y L+    D     E    L + FE++ GA+YL++G  L  V ++  ++++   E +S+
Sbjct: 92   DYILLSNAEDNNGGREKSSLLSNAFEAIMGAVYLEAG--LGEVQRIAIDLIEKNHEEISL 149

Query: 1159 SVPKSPIRELLELEPENARFS-KPEKLADGRR-------VRVTVEVFGKGSYKGIGRNYC 1210
                   +  L+ E   ARF   PE      R         V V +  K   +  G++  
Sbjct: 150  DSLFRDFKTTLQ-ELTQARFGITPEYKVLASRGPDHQKEFEVGVFIEDKEYARANGKSKK 208

Query: 1211 IAKCTAAKCALKHLKSAK 1228
            IA+  AA+ A++ L   K
Sbjct: 209  IAQQEAARVAVELLNKEK 226


>gi|163941587|ref|YP_001646471.1| ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|229013032|ref|ZP_04170197.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|229134657|ref|ZP_04263466.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|423489025|ref|ZP_17465707.1| ribonuclease 3 [Bacillus cereus BtB2-4]
 gi|423494750|ref|ZP_17471394.1| ribonuclease 3 [Bacillus cereus CER057]
 gi|423498458|ref|ZP_17475075.1| ribonuclease 3 [Bacillus cereus CER074]
 gi|423518539|ref|ZP_17495020.1| ribonuclease 3 [Bacillus cereus HuA2-4]
 gi|423592155|ref|ZP_17568186.1| ribonuclease 3 [Bacillus cereus VD048]
 gi|423598840|ref|ZP_17574840.1| ribonuclease 3 [Bacillus cereus VD078]
 gi|423661311|ref|ZP_17636480.1| ribonuclease 3 [Bacillus cereus VDM022]
 gi|423669423|ref|ZP_17644452.1| ribonuclease 3 [Bacillus cereus VDM034]
 gi|423674398|ref|ZP_17649337.1| ribonuclease 3 [Bacillus cereus VDM062]
 gi|229564349|sp|A9VT87.1|RNC_BACWK RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|163863784|gb|ABY44843.1| Ribonuclease III [Bacillus weihenstephanensis KBAB4]
 gi|228648703|gb|EEL04729.1| Ribonuclease 3 [Bacillus cereus BDRD-ST196]
 gi|228748286|gb|EEL98146.1| Ribonuclease 3 [Bacillus mycoides DSM 2048]
 gi|401150843|gb|EJQ58295.1| ribonuclease 3 [Bacillus cereus CER057]
 gi|401160507|gb|EJQ67885.1| ribonuclease 3 [Bacillus cereus CER074]
 gi|401160747|gb|EJQ68122.1| ribonuclease 3 [Bacillus cereus HuA2-4]
 gi|401232288|gb|EJR38790.1| ribonuclease 3 [Bacillus cereus VD048]
 gi|401237110|gb|EJR43567.1| ribonuclease 3 [Bacillus cereus VD078]
 gi|401298550|gb|EJS04150.1| ribonuclease 3 [Bacillus cereus VDM034]
 gi|401301352|gb|EJS06941.1| ribonuclease 3 [Bacillus cereus VDM022]
 gi|401309949|gb|EJS15282.1| ribonuclease 3 [Bacillus cereus VDM062]
 gi|402432273|gb|EJV64332.1| ribonuclease 3 [Bacillus cereus BtB2-4]
          Length = 245

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|229098318|ref|ZP_04229265.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|229104411|ref|ZP_04235080.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|229117335|ref|ZP_04246713.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|407706308|ref|YP_006829893.1| hypothetical protein MC28_3072 [Bacillus thuringiensis MC28]
 gi|423378312|ref|ZP_17355596.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
 gi|423441420|ref|ZP_17418326.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
 gi|423448354|ref|ZP_17425233.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
 gi|423464494|ref|ZP_17441262.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
 gi|423533836|ref|ZP_17510254.1| ribonuclease 3 [Bacillus cereus HuB2-9]
 gi|423540895|ref|ZP_17517286.1| ribonuclease 3 [Bacillus cereus HuB4-10]
 gi|423547133|ref|ZP_17523491.1| ribonuclease 3 [Bacillus cereus HuB5-5]
 gi|423623075|ref|ZP_17598853.1| ribonuclease 3 [Bacillus cereus VD148]
 gi|228666235|gb|EEL21699.1| Ribonuclease 3 [Bacillus cereus Rock1-3]
 gi|228679109|gb|EEL33317.1| Ribonuclease 3 [Bacillus cereus Rock3-28]
 gi|228685216|gb|EEL39147.1| Ribonuclease 3 [Bacillus cereus Rock3-29]
 gi|401128948|gb|EJQ36631.1| ribonuclease 3 [Bacillus cereus BAG5O-1]
 gi|401172083|gb|EJQ79304.1| ribonuclease 3 [Bacillus cereus HuB4-10]
 gi|401178854|gb|EJQ86027.1| ribonuclease 3 [Bacillus cereus HuB5-5]
 gi|401259848|gb|EJR66022.1| ribonuclease 3 [Bacillus cereus VD148]
 gi|401636578|gb|EJS54332.1| ribonuclease 3 [Bacillus cereus BAG1O-2]
 gi|402418081|gb|EJV50381.1| ribonuclease 3 [Bacillus cereus BAG4X2-1]
 gi|402420761|gb|EJV53032.1| ribonuclease 3 [Bacillus cereus BAG6O-1]
 gi|402464055|gb|EJV95755.1| ribonuclease 3 [Bacillus cereus HuB2-9]
 gi|407383993|gb|AFU14494.1| Ribonuclease 3 [Bacillus thuringiensis MC28]
          Length = 245

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/200 (31%), Positives = 94/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEKIGITFTDEKLLTQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|198414531|ref|XP_002121902.1| PREDICTED: similar to ribonuclease III, nuclear, partial [Ciona
            intestinalis]
          Length = 1224

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 88/326 (26%), Positives = 138/326 (42%), Gaps = 63/326 (19%)

Query: 927  SIADCVEALIGAYLIECG-PRGALLFMSWLG--------LKVIPPVTNPESKHLSDV--- 974
            ++A+C EAL+GA  +E G  R   LF  +L          + +P     E + +SD    
Sbjct: 895  AMANCFEALMGAIYMEAGLERAQRLFGEFLWETEALQRVWRSLPLHQLQEEEPVSDRRCI 954

Query: 975  ----LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLI 1029
                +L    KFE+SI  +F     L +A T  +   N LT  + QRLEFLGD++ + + 
Sbjct: 955  KDVPILQKLTKFEDSIGVKFNHIRLLAKAFTWRNVHENILTHGHNQRLEFLGDSVCNLVA 1014

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + +L++    H  G LT LR+ +VN    + +A  LG                       
Sbjct: 1015 SAYLFKLYPTHHEGHLTLLRATVVNGRTQSLVATELGM---------------------- 1052

Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVP----KALGDLFESVAGAIYLDSGMS-LDTVWKV 1144
                     EY +   + D  E   VP    K L DL E+   A+++D G+  + T  K+
Sbjct: 1053 --------PEYVICTLDNDSTE--RVPEWREKNLADLLEAFVAALFIDKGLKYVKTFMKI 1102

Query: 1145 -YYEIMKSEIERLSVSVPKSPIRE-LLELEPENA-------RFSKPEKLADGRRVRVTVE 1195
             ++  +K  I     + PKS +++  L L  E           S     +  R+  VTV 
Sbjct: 1103 CFFPRLKEFILTQEWNDPKSCLQQCCLTLRQEGKEPQLPTYEISHQTGPSHSRKYVVTVH 1162

Query: 1196 VFGKGSYKGIGRNYCIAKCTAAKCAL 1221
              G+   KG G +   A+  AA+ AL
Sbjct: 1163 FKGEEIGKGTGESIQRAERNAARTAL 1188



 Score = 58.5 bits (140), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/250 (24%), Positives = 92/250 (36%), Gaps = 87/250 (34%)

Query: 982  FEESINYRFKDKSYLLQAMTHAS----------YFLNTLTDC------------------ 1013
             E+ I Y FK++ +L  AM H S          +  NTL++C                  
Sbjct: 735  LEKKIGYEFKERKWLSHAMNHPSCQMNFGLNPDHVRNTLSNCGLRLPRYGDSSIHYKYTR 794

Query: 1014 --------------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
                                       +RLEFLGDA++ Y  + HL+      S G LT 
Sbjct: 795  KRGITTLIRIMARLGQQRPVLSPIEHNERLEFLGDAVVGYFTSVHLFLLFPDLSEGALTT 854

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
             R+ LVNN   A LA RL                                 E+ L     
Sbjct: 855  FRTVLVNNQHLALLAERLQL------------------------------DEFMLYAHGP 884

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRE 1167
            D     ++  A+ + FE++ GAIY+++G  L+   +++ E +  E E L       P+ +
Sbjct: 885  DLCRKADLRHAMANCFEALMGAIYMEAG--LERAQRLFGEFL-WETEALQRVWRSLPLHQ 941

Query: 1168 LLELEPENAR 1177
            L E EP + R
Sbjct: 942  LQEEEPVSDR 951


>gi|205355648|ref|ZP_03222418.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
 gi|205346425|gb|EDZ33058.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CG8421]
          Length = 225

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 50/164 (30%), Positives = 78/164 (47%), Gaps = 33/164 (20%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
            ++   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+
Sbjct: 1    MMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLF 57

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
                  + G L+ LR+ALVN   FA +A  L    F               + +  EN+ 
Sbjct: 58   HKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN- 103

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                               E P  L D  E++ GAI+L++G   
Sbjct: 104  ----------------GGKEKPSILSDTLEAIIGAIHLEAGFEF 131


>gi|392338628|ref|XP_003753585.1| PREDICTED: ribonuclease 3 [Rattus norvegicus]
          Length = 940

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 605  AMANCFEALIGAVYLEGTLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 664

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 665  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 723

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 724  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 762

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 763  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 812

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 813  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 872

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 873  ERIGCGKGPSIQQAEMGAAMDALE 896



 Score = 45.4 bits (106), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 48/205 (23%), Positives = 76/205 (37%), Gaps = 84/205 (40%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 449  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 508

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 509  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 568

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 569  IVQNQHLAMLAKKLE---------------LDRFMLYAHGPDL------------CRES- 600

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGM 1136
              ++  A+ + FE++ GA+YL+  +
Sbjct: 601  --DLRHAMANCFEALIGAVYLEGTL 623



 Score = 41.2 bits (95), Expect = 4.1,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 710 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 768


>gi|229061452|ref|ZP_04198797.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|423367893|ref|ZP_17345325.1| ribonuclease 3 [Bacillus cereus VD142]
 gi|423511883|ref|ZP_17488414.1| ribonuclease 3 [Bacillus cereus HuA2-1]
 gi|228717875|gb|EEL69523.1| Ribonuclease 3 [Bacillus cereus AH603]
 gi|401082754|gb|EJP91019.1| ribonuclease 3 [Bacillus cereus VD142]
 gi|402450144|gb|EJV81978.1| ribonuclease 3 [Bacillus cereus HuA2-1]
          Length = 245

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 62/200 (31%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+TVW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.8 bits (94), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|8886722|gb|AAF80558.1|AF189011_1 ribonuclease III [Homo sapiens]
          Length = 1374

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 134/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1039 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1098

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1099 ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1157

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1158 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1196

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y D  +  + T   V ++
Sbjct: 1197 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYTDKDLEYVHTFMNVCFF 1246

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1247 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1306

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1307 ERIGCGKGPSIQQAEMGAAMDALE 1330



 Score = 45.4 bits (106), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 55/252 (21%), Positives = 95/252 (37%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 883  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 942

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 943  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 1002

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L        L P                       + L     D   
Sbjct: 1003 IVQNQHLAMLAKKL-------ELDP-----------------------FMLYAHGPDLCR 1032

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
            + ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1033 ESDLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1090

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1091 PNTDRQLIETSP 1102



 Score = 41.2 bits (95), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1144 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1202


>gi|403234829|ref|ZP_10913415.1| ribonuclease III [Bacillus sp. 10403023]
          Length = 243

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 114/255 (44%), Gaps = 37/255 (14%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYE 1035
            F  F+E +   F D+S L+QA TH+SY        ++   RLEFLGDA+L+  I++ L++
Sbjct: 16   FKAFQERLGINFHDESLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTISKFLFK 75

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 S G LT +R+A+V      +LA                             ND  
Sbjct: 76   KYPIMSEGELTKMRAAIVCEPSLVTLA-----------------------------NDLQ 106

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
              +   L +GE +     E P  L D+FE+  GA+YLD G+ +   +     I K     
Sbjct: 107  FGELVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQGLEVVNQFLEKTVIPKINAGA 165

Query: 1156 LS-VSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCI 1211
             S V   KS ++EL++ +       R  + +  A  R     V + G+    G G++   
Sbjct: 166  FSHVMDYKSQLQELVQRDGIGLIEYRVLQEKGPAHSREFVSRVSLNGEELGTGTGKSKKE 225

Query: 1212 AKCTAAKCALKHLKS 1226
            A+  AA+ ALK+LK+
Sbjct: 226  AEQHAAEIALKNLKN 240



 Score = 42.0 bits (97), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  I+ FL+  YP + EG+L+ +R+  V   +L  L     FGE ++  K
Sbjct: 56  RLEFLGDAVLELTISKFLFKKYPIMSEGELTKMRAAIVCEPSLVTLANDLQFGELVLLGK 115

Query: 843 FE 844
            E
Sbjct: 116 GE 117


>gi|51892591|ref|YP_075282.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
 gi|81388984|sp|Q67PF5.1|RNC_SYMTH RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|51856280|dbj|BAD40438.1| ribonuclease III [Symbiobacterium thermophilum IAM 14863]
          Length = 235

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 75/244 (30%), Positives = 111/244 (45%), Gaps = 37/244 (15%)

Query: 984  ESINYRFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E++ Y F+D+S LL+A+TH +Y   +      +RLEFLGD++L  +I  HLYE       
Sbjct: 16   EALGYEFRDESLLLEALTHTTYANEHPRARANERLEFLGDSVLGMVIAAHLYERYPDLPE 75

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G LT +R+A+V     A  A  LG          G H    RF +               
Sbjct: 76   GELTKIRAAVVCEPSLAERARVLGI---------GRH---MRFGR--------------- 108

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT--VWKVYYEIMKSEIERLSVSV 1160
              GE     D +    L D FE+V GA+YLD G+      V +   +++++  + L    
Sbjct: 109  --GEAVSGRDRD--STLSDAFEAVVGALYLDGGLEAAQRFVLRELGQLVEAARQGLVRVD 164

Query: 1161 PKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAA 1217
             K+ ++E L+ +   A   R    E  A  RR +V V   G+    G GRN   A+  AA
Sbjct: 165  YKTQLQEQLQRQGAAAPQYRLLVEEGPAHLRRFQVGVYFEGRLLGTGWGRNKKEAEQEAA 224

Query: 1218 KCAL 1221
            + AL
Sbjct: 225  RQAL 228


>gi|33585614|gb|AAH55696.1| Rnasen protein, partial [Mus musculus]
          Length = 780

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 445  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 504

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 505  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 563

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 564  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 602

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 603  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 652

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 653  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 712

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 713  ERIGCGKGPSIQQAEMGAAMDALE 736



 Score = 46.2 bits (108), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 372  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 423

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 424  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 461

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 462  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 508



 Score = 40.8 bits (94), Expect = 4.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 550 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 608


>gi|27552890|gb|AAH41162.1| RNASEN protein [Homo sapiens]
          Length = 722

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 387  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 446

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 447  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 505

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 506  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 544

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 545  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 594

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 595  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 654

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 655  ERIGCGKGPSIQQAEMGAAMDALE 678



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 314  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 365

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 366  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 403

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 404  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 450



 Score = 40.8 bits (94), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 492 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 550


>gi|150021479|ref|YP_001306833.1| ribonuclease III [Thermosipho melanesiensis BI429]
 gi|149794000|gb|ABR31448.1| Ribonuclease III [Thermosipho melanesiensis BI429]
          Length = 231

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 51/172 (29%), Positives = 79/172 (45%), Gaps = 30/172 (17%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E  I YRF++K  L  A+TH SY        Y+RLEFLGD+++D L+   LYE  +  + 
Sbjct: 10   EHVIGYRFRNKELLFTALTHTSYANENKKQSYERLEFLGDSVIDILVCTILYEQYQTLNE 69

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            GT+  ++SA+ +  I   +A +                             F L +   L
Sbjct: 70   GTMAQIKSAVTSEDILFEIAKK-----------------------------FNLGKYILL 100

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
             +GE   +   E    L D+ ES+  AIYLDS  +L  +  ++ +I K  I+
Sbjct: 101  GKGE-RRSRGSEKKSILADVVESLIAAIYLDSNKNLKLIENLFSKIFKDYID 151


>gi|302872013|ref|YP_003840649.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
 gi|302574872|gb|ADL42663.1| ribonuclease III [Caldicellulosiruptor obsidiansis OB47]
          Length = 222

 Score = 74.3 bits (181), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 63/242 (26%), Positives = 122/242 (50%), Gaps = 37/242 (15%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            ++ E+++ Y+F+DK+ L  A+TH S   ++  +CY+RLEFLGDA L+  ++++LY     
Sbjct: 2    EEIEKALGYKFEDKNLLKLALTHKSA-THSNKNCYERLEFLGDAALELAVSKYLYVYFPE 60

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             S G LT++R+A+V +   + +A +L   +   H+  G  E +++F     EN       
Sbjct: 61   LSEGELTNIRAAVVCSQTLSKVAEKLNLKN---HIIFGKREKMEKF----HEN------- 106

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS 1159
                               L D+ E++ GAI+++SG   DTV K+   ++K  I++    
Sbjct: 107  ----------------KSILADVLEALFGAIFIESG--FDTVEKIIVNLLKPYIQKAVAG 148

Query: 1160 VP----KSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCT 1215
                  K+ ++E+++ E +     K  ++ + +  +  + + GK   +G G +   A+  
Sbjct: 149  KLFYDYKTKLQEIVQREGQKKIVYKDCEILEKKYFKSELFIEGKKVSEGYGTSKKEAQQD 208

Query: 1216 AA 1217
            AA
Sbjct: 209  AA 210



 Score = 41.6 bits (96), Expect = 2.9,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 4/91 (4%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+ A++ +LY  +P + EG+L+++R+  V +  L K+ ++      +I  K
Sbjct: 37  RLEFLGDAALELAVSKYLYVYFPELSEGELTNIRAAVVCSQTLSKVAEKLNLKNHIIFGK 96

Query: 843 FEPRDNWLPPGYFVPKYLE----TALIEAGF 869
            E  + +      +   LE       IE+GF
Sbjct: 97  REKMEKFHENKSILADVLEALFGAIFIESGF 127


>gi|340975794|gb|EGS22909.1| hypothetical protein CTHT_0013870 [Chaetomium thermophilum var.
            thermophilum DSM 1495]
          Length = 1660

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 158/428 (36%), Gaps = 141/428 (32%)

Query: 784  LETIGDSFLKYAITI---FLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +E +GD+ LK+  T+     Y TYP   EG LS ++ + VSN   F+             
Sbjct: 1166 MEFLGDALLKFLTTVNCEAKYLTYP---EGFLSPIKDRIVSNMRFFRAAV---------- 1212

Query: 841  TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD 900
                        G+ + +Y+    I+A      W            P  +  I+ +    
Sbjct: 1213 ------------GFGLDRYI----IDAKMVQKRWR-----------PPTISSILGR---- 1241

Query: 901  LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---- 952
                         P ++     +  K++AD VEAL+GA  +  G   AL    LF+    
Sbjct: 1242 -------------PPSVTAPRQLSTKTVADVVEALVGAAYLSGGTDRALTCVPLFLPDVP 1288

Query: 953  -SWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESI-NYRFKDKSYLLQAMTHASYFLN-T 1009
              WL +     +    +    D L     + EE +  Y FK KS L++A+TH+S      
Sbjct: 1289 IDWLPVGRCRDILFNHAA-ADDPLPKTMRRIEEQLLGYEFKKKSLLVEALTHSSCPAGPG 1347

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYE--------DERAHSPGTLTDLRSALVNNIIFASL 1061
            +     RLE LGDA+LD+L+   LYE         ++   P  L  ++SALVN  I A L
Sbjct: 1348 VRGSLDRLELLGDALLDFLVATKLYELYKCNVDGQQQMVVPYILHIMKSALVNQDIMAVL 1407

Query: 1062 A----------------------------------------------VRLGFHHFFKH-- 1073
                                                           VR+    F +H  
Sbjct: 1408 ILEEWTILQEELDIIAPPSPSSSQGSETAISEGNGEHSGGVTLRTRHVRVPLTAFLRHNT 1467

Query: 1074 --LSPGLHEVIQRFVKMQAENDFTLNQ----EYYLMEGECDEAEDIEVPKALGDLFESVA 1127
              LS  +++  +R+  M+ E    L       + L+         +  PK   D+FE+V 
Sbjct: 1468 IQLSRFMNDTTRRYAAMRHEVQHALTHGDRYPWRLI-------SQLRAPKVFSDVFEAVL 1520

Query: 1128 GAIYLDSG 1135
             A+++DSG
Sbjct: 1521 AAVWVDSG 1528


>gi|313683639|ref|YP_004061377.1| RNAase III [Sulfuricurvum kujiense DSM 16994]
 gi|313156499|gb|ADR35177.1| RNAse III [Sulfuricurvum kujiense DSM 16994]
          Length = 226

 Score = 74.3 bits (181), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 51/164 (31%), Positives = 81/164 (49%), Gaps = 39/164 (23%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRH 1032
            +D     +E + Y F++K  L++A+TH SY   + N      +RLEFLGDA+LD ++  +
Sbjct: 1    MDNLQALQERLGYTFQNKELLIEALTHKSYKQPYNN------ERLEFLGDAVLDLIVGEY 54

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            LY+  R +  G L+ +R++LVN   F SLA          HL+ G H     F+    EN
Sbjct: 55   LYKKFRGYDEGKLSKMRASLVNEGGFTSLA---------NHLNLGEH----IFLSNAEEN 101

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
            +    +                    L + FE+V GA+YL++G+
Sbjct: 102  NSGRTKS-----------------SLLSNAFEAVMGAMYLETGL 128


>gi|297343244|pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain
            Ribonuclase Iii (Rnc) From Campylobacter Jejuni
 gi|297343245|pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain
            Ribonuclase Iii (Rnc) From Campylobacter Jejuni
          Length = 248

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 33/172 (19%)

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            E+ +     +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD
Sbjct: 16   ENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLD 72

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
             ++  +L+      + G L+ LR+ALVN   FA +A  L    F               +
Sbjct: 73   LVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LM 119

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
             +  EN+           G+       E P  L D  E++ GAI+L++G   
Sbjct: 120  SVAEENN----------GGK-------EKPSILSDALEAIIGAIHLEAGFEF 154


>gi|384156209|ref|YP_005539024.1| ribonuclease III [Arcobacter butzleri ED-1]
 gi|345469763|dbj|BAK71214.1| ribonuclease III [Arcobacter butzleri ED-1]
          Length = 224

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 116/243 (47%), Gaps = 54/243 (22%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            + K E+ ++Y+FK+K+ +++A+TH S+   + N      +RLEFLGDA+L+ ++  +LY 
Sbjct: 4    YSKLEKCLDYQFKNKNLIIEALTHKSFKKPYNN------ERLEFLGDAVLNLIVGEYLYL 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLA--VRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
                 + G L+ +R++LVN   F  LA  ++LG                           
Sbjct: 58   KFPKSNEGELSKIRASLVNETGFTRLANEIKLG--------------------------- 90

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                 EY  +    +  +       L D FE++ GAIYL+SG  L+T+  +   I++   
Sbjct: 91   -----EYIFISTAEERNKGRTKASILSDAFEAIMGAIYLESG--LNTLKPIILRILEESY 143

Query: 1154 ERLSVSVPKSPIRELLELEPENARF-SKPEKLADG-------RRVRVTVEVFGKGSYKGI 1205
            E++++ V  S  +  L+ E   ARF S PE   +G       +   V++ + GK   K  
Sbjct: 144  EKINLDVLFSDYKTALQ-EITQARFASIPEYKIEGSYGPDHKKEFEVSIWIDGKNYGKAS 202

Query: 1206 GRN 1208
            G++
Sbjct: 203  GKS 205



 Score = 40.8 bits (94), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L   +  +LY  +P  +EG+LS +R+  V+     +L  +   GE +  + 
Sbjct: 38  RLEFLGDAVLNLIVGEYLYLKFPKSNEGELSKIRASLVNETGFTRLANEIKLGEYIFIST 97

Query: 843 FEPRD 847
            E R+
Sbjct: 98  AEERN 102


>gi|321463676|gb|EFX74690.1| hypothetical protein DAPPUDRAFT_251609 [Daphnia pulex]
          Length = 282

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 10/188 (5%)

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH-EVIQRFVKMQAEND--FTL 1096
            ++ G L+ L+SA+  N   A +AVR G H   +H  P    E ++ FV  Q +N   F+L
Sbjct: 38   YNQGQLSVLKSAITCNDTLAVIAVRTGLHLLLQHRLPAKQIEELESFVDHQNKNQHLFSL 97

Query: 1097 NQEYYLMEG-ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
             +E  ++   E D   DI+ PK   D FE++ GA+  D       + KV   +M   I +
Sbjct: 98   EKELVIISSSEGDRVFDIDYPKVYADAFETLIGALLRDCEREDKVIRKVVLNLMGDVIVK 157

Query: 1156 LSVSVPKSPIRELLE--LEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK 1213
               ++P  P++ + +  ++PE   F + + L DG    V ++V    S+ G G +   AK
Sbjct: 158  FHNNIPVCPLQRVNQNRIKPE---FKEEKNLPDG-TFHVILKVKNLQSFHGSGPSMKSAK 213

Query: 1214 CTAAKCAL 1221
              AAK A+
Sbjct: 214  TAAAKLAI 221


>gi|452974503|gb|EME74323.1| ribonuclease III [Bacillus sonorensis L12]
          Length = 249

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 76/256 (29%), Positives = 111/256 (43%), Gaps = 41/256 (16%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYE 1035
            F KF+E I+ +F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ LY 
Sbjct: 20   FKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYA 79

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
               A S G LT LR+A+V      SLA  L F                            
Sbjct: 80   KYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELV------------------------ 115

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                  L +GE +     + P  L D+FE+  GA+YLD G  LD+V       +  +I+ 
Sbjct: 116  -----LLGKGE-EMTGGRKRPALLADVFEAFIGALYLDQG--LDSVVAFLKAYVFPKIDD 167

Query: 1156 LSVSVPKSPIRELLELEPENARFSKPEKL------ADGRRVRVTVEVFGKGSYKGIGRNY 1209
             + S       +L E    + R +   K+      A  R     V + G+    G GR+ 
Sbjct: 168  GAFSHVMDFKSQLQEFVQRDGRGTLEYKILQEKGPAHNREFEANVSLKGEVLGVGSGRSK 227

Query: 1210 CIAKCTAAKCALKHLK 1225
              A+  AA+ AL  L+
Sbjct: 228  KEAEQHAAQEALAKLQ 243



 Score = 47.8 bits (112), Expect = 0.037,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FLY  YP + EG L+ LR+  V   +L  L  +  FGE ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|54294754|ref|YP_127169.1| ribonuclease III [Legionella pneumophila str. Lens]
 gi|397664331|ref|YP_006505869.1| RNase III [Legionella pneumophila subsp. pneumophila]
 gi|81368418|sp|Q5WVI4.1|RNC_LEGPL RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|53754586|emb|CAH16070.1| hypothetical protein lpl1831 [Legionella pneumophila str. Lens]
 gi|395127742|emb|CCD05941.1| RNase III [Legionella pneumophila subsp. pneumophila]
          Length = 224

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 50/251 (19%)

Query: 986  INYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
            +NY F + +YL QA+TH S      +D Y+R EFLGD+IL ++I   L+     HS G L
Sbjct: 12   LNYHFNNMAYLKQALTHCS----AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQL 67

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            + LRS LV   + A +A  +G   +                              +L +G
Sbjct: 68   SRLRSFLVKGEMLAEIAREIGLGDYL-----------------------------FLGQG 98

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL--DTVWKVYYEIMKSEIERLSVSVPKS 1163
            E   +        L D  E++  AIYLD GM+     +  +Y   +        +   K+
Sbjct: 99   EL-RSGGFRRTSILADALEAILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKT 157

Query: 1164 PIRELLELEPENARFSKPEKL---------ADGRRVRVTVEVFGKGSYKGIGRNYCIAKC 1214
             ++E L+     ++F+ PE +         A    V  T+E   + +Y G G N   A+ 
Sbjct: 158  QLQEFLQA----SKFALPEYVLTKVEGDEHAQIFHVTCTIEGVSQVAY-GTGPNRRKAEQ 212

Query: 1215 TAAKCALKHLK 1225
             AAK  L+ L+
Sbjct: 213  LAAKAMLEQLQ 223


>gi|164688568|ref|ZP_02212596.1| hypothetical protein CLOBAR_02213 [Clostridium bartlettii DSM 16795]
 gi|164602981|gb|EDQ96446.1| ribonuclease III [Clostridium bartlettii DSM 16795]
          Length = 233

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/252 (29%), Positives = 118/252 (46%), Gaps = 48/252 (19%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYF-LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            FE+ INY FK+K Y+L+A+TH+SY   N      +RLEFLGD++L  +I+ +L++ E   
Sbjct: 14   FEQKINYEFKNKEYILEALTHSSYSNENKNYPFNERLEFLGDSVLSIVISDYLFKKETKL 73

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G LT +R+ +V     + ++  +       HL                          
Sbjct: 74   PEGELTKIRANIVCEESLSEVSKNI-------HLGK------------------------ 102

Query: 1101 YLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGMS------LDTVWKVYYEIMKSEI 1153
            Y++ G+ +EA    E    L D  E+V  AIYLD G+       L  + K+  + +K +I
Sbjct: 103  YMLLGKGEEATGGRERISILADALEAVIAAIYLDGGIKCAREFILTNMEKIINDSIKGKI 162

Query: 1154 ERLSVSVPKSPIRELLELEPENARFSK--PEKLADGRRVRVTVEVFGKGSYKGIGRNYCI 1211
             R      K+ ++E+L+   EN  + K   EK  D  + R  +EV    +  G+G     
Sbjct: 163  FR----DYKTCLQEVLQSNGENNIWYKLIEEKGPDHNK-RFVMEVGINDTVLGVGEGKSK 217

Query: 1212 --AKCTAAKCAL 1221
              A+  AAKCAL
Sbjct: 218  KDAEQVAAKCAL 229


>gi|51473232|ref|YP_066989.1| ribonuclease III [Rickettsia typhi str. Wilmington]
 gi|383752006|ref|YP_005427106.1| ribonuclease III [Rickettsia typhi str. TH1527]
 gi|383842841|ref|YP_005423344.1| ribonuclease III [Rickettsia typhi str. B9991CWPP]
 gi|81390308|sp|Q68XY5.1|RNC_RICTY RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|51459544|gb|AAU03507.1| RNase D [Rickettsia typhi str. Wilmington]
 gi|380758649|gb|AFE53884.1| ribonuclease III [Rickettsia typhi str. TH1527]
 gi|380759488|gb|AFE54722.1| ribonuclease III [Rickettsia typhi str. B9991CWPP]
          Length = 227

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 70/261 (26%), Positives = 118/261 (45%), Gaps = 45/261 (17%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHAS---YFLNTLTDCYQRLEFLGDAILDYLITRH 1032
            ++ F+K E  + Y FK+K  L++A++H S   Y        Y+RLEFLGDA+L+ LIT  
Sbjct: 1    MESFEKLETLLGYSFKNKELLIEALSHPSLRQYHEYKYDKDYERLEFLGDAVLNLLITEI 60

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+++   +  G L  +RS LV       +  +L                           
Sbjct: 61   LFKNFENYKEGNLAKIRSYLVCKETICIVGTKLAL------------------------- 95

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL--DTVWKVYYEIMK 1150
                 ++Y +M    + A   + P  + ++ E++  AIYLDS + +  + + K++ E MK
Sbjct: 96   -----KDYIIMTHGEEVAGGRDNPNNIENVTEALIAAIYLDSNIEITHNIIEKLWAEFMK 150

Query: 1151 SEIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGR 1207
              ++ L+   PK+ ++E  +    +    R  K E  A      V V+V     Y+ I  
Sbjct: 151  --VQNLTDYDPKTALQEWAQASSNHLPIYRLIKREGAAHSSIFTVLVKV---KDYEQICT 205

Query: 1208 NYCI--AKCTAAKCALKHLKS 1226
             Y I  A+  AA+C L  LK+
Sbjct: 206  GYSIKEAEKKAARCLLHRLKN 226


>gi|393758412|ref|ZP_10347233.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
 gi|393164831|gb|EJC64883.1| ribonuclease III [Alcaligenes faecalis subsp. faecalis NCIB 8687]
          Length = 252

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 36/191 (18%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E +I Y FKD   L QA+TH S+         +RLEFLGD++L++ +   L+E  +   
Sbjct: 7    LEAAIGYSFKDIGLLEQALTHRSHSARH----NERLEFLGDSVLNFTVAALLFERFQRID 62

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G L+ LR+ LV     A +A RLG   + +                             
Sbjct: 63   EGDLSRLRANLVKQAALAEIATRLGLSDYLR----------------------------- 93

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKSEIERLSVSV 1160
            L EGE  ++     P  L D  E++ GA++LD+G +   TV    YE M  +++  ++  
Sbjct: 94   LGEGEL-KSGGFRRPSILADALEAIFGAVFLDAGFTQAQTVITQLYEPMLVDVDPKTLGK 152

Query: 1161 -PKSPIRELLE 1170
             PK+ ++ELL+
Sbjct: 153  DPKTLLQELLQ 163


>gi|270308287|ref|YP_003330345.1| ribonuclease III [Dehalococcoides sp. VS]
 gi|270154179|gb|ACZ62017.1| ribonuclease III [Dehalococcoides sp. VS]
          Length = 248

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 75/266 (28%), Positives = 120/266 (45%), Gaps = 52/266 (19%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNT---LTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + EES+  +F++ S L QA+ H S+       L    +R+EFLGDA+L  +    LY D 
Sbjct: 17   ELEESLGVKFENPSLLEQALIHTSWVNENPTHLNGSNERMEFLGDAVLGVIFADRLYHDF 76

Query: 1038 RAHSPGTLTDLRSALVN--NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 G LT  RS LV   +++  +L + LG +                           
Sbjct: 77   PDIQEGDLTRFRSLLVRRESLVRVALGINLGNY--------------------------- 109

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 YL  GE D ++    P  L   FE+V  AIY+D G  +D   +V + + ++E+ER
Sbjct: 110  ----LYLGRGE-DVSKGRFKPANLAGAFEAVLAAIYIDKG--IDITREVIFRLFRTEMER 162

Query: 1156 ---LSVSVP-KSPIRELLELEPEN------ARFSKPEKLADGRRVRVTVEVFGKGSYKGI 1205
               LS ++  KS ++EL++ + +         FS PE     R     V    K   +G 
Sbjct: 163  VQTLSSNIDYKSRLQELIQAQMQMTPRYRITNFSGPEH---NRLFVAEVYTEDKVLAEGS 219

Query: 1206 GRNYCIAKCTAAKCALKHLKSAKPAD 1231
            GR+   A+ +AAK AL+  +++  A+
Sbjct: 220  GRSKKEAETSAAKAALQQFENSFTAE 245


>gi|311068114|ref|YP_003973037.1| ribonuclease III [Bacillus atrophaeus 1942]
 gi|419823905|ref|ZP_14347438.1| ribonuclease III [Bacillus atrophaeus C89]
 gi|310868631|gb|ADP32106.1| ribonuclease III [Bacillus atrophaeus 1942]
 gi|388471942|gb|EIM08732.1| ribonuclease III [Bacillus atrophaeus C89]
          Length = 249

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 117/257 (45%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ 
Sbjct: 17   IEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +++  KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVESFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + +     +    +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEFVQRDGKGTLEYKIQNEKGPAHNREFEAIVSLKGEALGIGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.7 bits (104), Expect = 0.37,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|15242329|ref|NP_199328.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
 gi|75171238|sp|Q9FKF0.1|RTL3_ARATH RecName: Full=Ribonuclease 3-like protein 3; AltName:
            Full=Ribonuclease III-like protein 3; Short=RNase
            III-like protein 3; AltName: Full=Ribonuclease three-like
            protein 3
 gi|9759600|dbj|BAB11388.1| unnamed protein product [Arabidopsis thaliana]
 gi|332007827|gb|AED95210.1| RNAse THREE-like protein 3 [Arabidopsis thaliana]
          Length = 957

 Score = 73.9 bits (180), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 18/175 (10%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            ++  +  E+ +NY F +K+ L +A+T  S         + RLEF GD+IL+   T ++  
Sbjct: 1    MNSVEAVEKILNYSFVNKTLLKEAITQKSPL-------FDRLEFFGDSILEVAFTNYICH 53

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                     L DLR+A V+N  FA +AV    HHF    +P L + ++ F +   + D  
Sbjct: 54   TYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKED-- 111

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150
                             ++ PK L D  ES+A  +++D    +  +W+++  +++
Sbjct: 112  ---------DPVPYGGLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLE 157



 Score = 64.7 bits (156), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 115/258 (44%), Gaps = 35/258 (13%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
            E+ +NY F +K+ L + +TH +  L      +Q L F+G++ L    T+HLY       P
Sbjct: 419  EKILNYSFVNKTLLKELLTHNNSPL------FQGLMFVGESALSLAFTKHLYLTYPMLEP 472

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
              L+ LR A   +  +A +AV+ G +  F    P   ++   F++              L
Sbjct: 473  KDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIE--------------L 518

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS--EIERLSVSV 1160
            M  E D    ++ PK L +L   VAGA+Y+D   ++  + +++  +++    ++ L + +
Sbjct: 519  MGKEDDPYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQL 578

Query: 1161 PKSPIRELLELEPENA-----RFSKPEKLADGRRVRVTVEVFGKGSY--KGIGRNYCIAK 1213
             K P   L  L  ++      R+SK     DG   +   +V+    +   G  +    AK
Sbjct: 579  -KQPFLMLFRLADKHGKQIDFRYSK-----DGGSRKNIAQVYMDDMFIASGCAKRIDTAK 632

Query: 1214 CTAAKCALKHLKSAKPAD 1231
              AA+ A++ L    P +
Sbjct: 633  LLAAEEAIQKLSECMPIE 650


>gi|451982016|ref|ZP_21930351.1| Ribonuclease III [Nitrospina gracilis 3/211]
 gi|451760760|emb|CCQ91627.1| Ribonuclease III [Nitrospina gracilis 3/211]
          Length = 241

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 69/264 (26%), Positives = 118/264 (44%), Gaps = 43/264 (16%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY---QRLEFLGDAILDY 1027
            LS   +D   + + ++ Y FKD   L +A+TH SY +N  ++     +R EF+GD++LD 
Sbjct: 2    LSKERIDELAQLQINLGYTFKDILLLNKALTHKSY-VNEKSEAIKNNERFEFMGDSVLDV 60

Query: 1028 LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVK 1087
            +++ ++ +  +  S G L+ +R+A+VN    A LA                         
Sbjct: 61   VVSHYMVKTFQDFSEGLLSKIRAAVVNEACLAGLA------------------------- 95

Query: 1088 MQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
                 D  L     L  GE D     +    L + FE+VAGA+Y DS  +L+T + V+  
Sbjct: 96   ----RDICLGDYLLLGRGE-DLTGGRDKNSILANAFEAVAGAVYFDS--NLETAYDVFLP 148

Query: 1148 IMKSEIERLSVSVPKSPIRELLELEPENA-------RFSKPEKLADGRRVRVTVEVFGKG 1200
             +K EI + + +      +  L+   +N        +  K       ++  V V   G+ 
Sbjct: 149  RLKKEIAQYAKTSRFRDFKSELQHFSQNTLNCIPFYKVVKETGPDHEKQFEVVVRTNGEE 208

Query: 1201 SYKGIGRNYCIAKCTAAKCALKHL 1224
              +G GR+   A+  AA+ AL+HL
Sbjct: 209  QGRGAGRSKKEAEQAAARSALEHL 232


>gi|426246680|ref|XP_004017120.1| PREDICTED: LOW QUALITY PROTEIN: ribonuclease 3 [Ovis aries]
          Length = 1339

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1004 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1063

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FE++I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1064 ETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1122

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1123 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1161

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1162 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1211

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1212 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1271

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1272 ERIGCGKGPSIQQAEMGAAMDALE 1295



 Score = 46.6 bits (109), Expect = 0.081,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 848  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 907

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 908  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 967

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 968  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 999

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1000 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1055

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1056 PNTDRQLIETSP 1067



 Score = 41.2 bits (95), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1109 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1167


>gi|195952887|ref|YP_002121177.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
 gi|226741373|sp|B4U7T8.1|RNC_HYDS0 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|195932499|gb|ACG57199.1| Ribonuclease III [Hydrogenobaculum sp. Y04AAS1]
          Length = 232

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 52/178 (29%), Positives = 84/178 (47%), Gaps = 32/178 (17%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +D F+  EE I YRFKDK+ + +A TH S+  +  ++ Y+ LEFLGDA+++++    L E
Sbjct: 1    MDSFELLEEKIGYRFKDKNLVKKAFTHISF--SKSSENYEVLEFLGDALVNFMTVNILVE 58

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ L+S L++    ASLA  L F  +          +I +  +++  N   
Sbjct: 59   AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYI---------LISKGEELKGSN--- 106

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                              + P  L D+FE+   AIY+DSG        ++    KS+I
Sbjct: 107  ------------------KNPSILCDVFEAFWAAIYIDSGYDCKLTKSLFEHHFKSQI 146


>gi|163119429|ref|YP_078987.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|319646025|ref|ZP_08000255.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
 gi|404489084|ref|YP_006713190.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|81385589|sp|Q65JQ5.1|RNC_BACLD RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|52348075|gb|AAU40709.1| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|145902936|gb|AAU23349.2| ribonuclease III [Bacillus licheniformis DSM 13 = ATCC 14580]
 gi|317391775|gb|EFV72572.1| ribonuclease 3 [Bacillus sp. BT1B_CT2]
          Length = 249

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 34/171 (19%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYE 1035
            F KF+E I+ +F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ LY 
Sbjct: 20   FKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYA 79

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
               A S G LT LR+A+V      SLA  L F                            
Sbjct: 80   KYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF---------------------------- 111

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM-SLDTVWKVY 1145
              +   L +GE +     + P  L D+FE+  GA+YLD G+ ++ T  K Y
Sbjct: 112  -GELVLLGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEAVVTFLKAY 160



 Score = 47.8 bits (112), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FLY  YP + EG L+ LR+  V   +L  L  +  FGE ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|423682137|ref|ZP_17656976.1| ribonuclease III [Bacillus licheniformis WX-02]
 gi|383438911|gb|EID46686.1| ribonuclease III [Bacillus licheniformis WX-02]
          Length = 253

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 57/171 (33%), Positives = 81/171 (47%), Gaps = 34/171 (19%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYE 1035
            F KF+E I+ +F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ LY 
Sbjct: 24   FKKFQERISVQFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQFLYA 83

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
               A S G LT LR+A+V      SLA  L F                            
Sbjct: 84   KYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF---------------------------- 115

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM-SLDTVWKVY 1145
              +   L +GE +     + P  L D+FE+  GA+YLD G+ ++ T  K Y
Sbjct: 116  -GELVLLGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEAVVTFLKAY 164



 Score = 47.8 bits (112), Expect = 0.038,   Method: Composition-based stats.
 Identities = 25/63 (39%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FLY  YP + EG L+ LR+  V   +L  L  +  FGE ++  
Sbjct: 63  ERLEFLGDAVLELTISQFLYAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGELVLLG 122

Query: 842 KFE 844
           K E
Sbjct: 123 KGE 125


>gi|432930273|ref|XP_004081406.1| PREDICTED: ribonuclease 3-like [Oryzias latipes]
          Length = 1306

 Score = 73.9 bits (180), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/162 (37%), Positives = 80/162 (49%), Gaps = 19/162 (11%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLG-----LKVIPPVTNPESK 969
            ++A+C EALIGA  +E G        G LLF S      WL      L+V  P T+ +  
Sbjct: 955  AMANCFEALIGAVYLEGGLDEARLLFGRLLFNSEDLREVWLNYPAHPLQVQEPQTDRQLI 1014

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL      FE+SI   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1015 ETSPVL-QKLTSFEDSIGVFFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1073

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
             T +L+     H  G LT LRS+LVNN   A +A  LG   F
Sbjct: 1074 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1115



 Score = 48.9 bits (115), Expect = 0.017,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 96/256 (37%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLN----------TLTDCY----------------- 1014
             +E I Y FK++  L  AMTH S+ LN          +L++C                  
Sbjct: 795  LDELIGYVFKERCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKAHQMYMR 854

Query: 1015 ---------------------------QRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047
                                       +RLEFLGDA++++L + HLY    +   G L  
Sbjct: 855  KKGINTLINIMSRLGQDDPSPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLAT 914

Query: 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
             R+A+V N   A LA +L                + RF+      D             C
Sbjct: 915  YRTAIVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------C 947

Query: 1108 DEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI 1165
             E+   ++  A+ + FE++ GA+YL+ G  LD    ++  ++    ++  + ++ P  P+
Sbjct: 948  RES---DLRHAMANCFEALIGAVYLEGG--LDEARLLFGRLLFNSEDLREVWLNYPAHPL 1002

Query: 1166 --------RELLELEP 1173
                    R+L+E  P
Sbjct: 1003 QVQEPQTDRQLIETSP 1018



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 18/50 (36%), Positives = 32/50 (64%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++
Sbjct: 1060 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEE 1109


>gi|156501954|ref|YP_001428019.1| ribonuclease III [Francisella tularensis subsp. holarctica
            FTNF002-00]
 gi|290954597|ref|ZP_06559218.1| ribonuclease III [Francisella tularensis subsp. holarctica URFT1]
 gi|423050289|ref|YP_007008723.1| ribonuclease III [Francisella tularensis subsp. holarctica F92]
 gi|189043315|sp|A7NAR0.1|RNC_FRATF RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|156252557|gb|ABU61063.1| ribonuclease III [Francisella tularensis subsp. holarctica
            FTNF002-00]
 gi|421951011|gb|AFX70260.1| ribonuclease III [Francisella tularensis subsp. holarctica F92]
          Length = 230

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 93/196 (47%), Gaps = 43/196 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            + +F   + Y FKD + L++A+TH S         Y+RLEFLGD++L ++I   LY+   
Sbjct: 5    YSRFYNILGYNFKDYTLLIRALTHRS----KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              + G L+ LRS LV     A LA                                +L  
Sbjct: 61   DLAEGKLSQLRSKLVKGTTLAQLAS-------------------------------SLKM 89

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV----YYEIMKS-EI 1153
            + Y++ G  ++  + +  K L D+FE+V GAIYLDS  +  TV KV    Y  I+ S  +
Sbjct: 90   DEYIILGASEQGGN-KREKILEDVFEAVIGAIYLDSDFA--TVKKVILKWYQPIISSINL 146

Query: 1154 ERLSVSVPKSPIRELL 1169
            + + V   KS ++E+L
Sbjct: 147  DTIKVKDSKSKLQEIL 162



 Score = 44.3 bits (103), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 27/74 (36%), Positives = 37/74 (50%)

Query: 775 NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVF 834
           + T  + +RLE +GDS L + I   LY  + ++ EGKLS LRSK V    L +L      
Sbjct: 30  SKTKKNYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLASSLKM 89

Query: 835 GESMIATKFEPRDN 848
            E +I    E   N
Sbjct: 90  DEYIILGASEQGGN 103


>gi|402073770|gb|EJT69322.1| dicer-like protein 2 [Gaeumannomyces graminis var. tritici R3-111a-1]
          Length = 1538

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 81/292 (27%), Positives = 123/292 (42%), Gaps = 76/292 (26%)

Query: 919  TQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM---SW----LGLKVIPPVTNPE 967
             Q  +  K++AD VEALIGA LIE G   AL    LF+    W    LG +++       
Sbjct: 1113 AQRDLSTKTLADVVEALIGAALIEGGMDKALRCISLFLPDEEWRSLDLGRQILYQAAPKS 1172

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILD 1026
             K L   +       E  + Y F++K+ L++A+TH+SY +  + T C +RLEFLGD+ILD
Sbjct: 1173 VKKLPVTM----RPVEGLLGYTFRNKALLVEALTHSSYSVPGSETGCLERLEFLGDSILD 1228

Query: 1027 YLITRHLYE-------DERAHSPGTLTD---LRSALVNNIIFASLAV------------- 1063
             ++   L+         +    P   TD   LR+A+VN    A L +             
Sbjct: 1229 SVVVEKLFAIGGGDGDGDNGRPPLAHTDMHLLRTAMVNGDFLAFLTMEWRTPATAQYKVR 1288

Query: 1064 -----RLGFHHFFKHLSPGLHEVIQRFVKMQAE--------------NDFTLNQE----- 1099
                 R G   +    + G +E  +     Q+E               D T  Q+     
Sbjct: 1289 GGKRKRYGSEDYGDEHAMGENEEGEALKVEQSERPGLPLWTFMRHTSGDLTPEQQQTARR 1348

Query: 1100 YYLMEGECDEA------------EDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
            +  + G+   A              +   K   D+FE+V GA+++DSG SLD
Sbjct: 1349 HAALAGQIRRAMQNDRRYPWDLLARLRAAKVYSDVFEAVIGAVWVDSG-SLD 1399



 Score = 47.0 bits (110), Expect = 0.064,   Method: Compositional matrix adjust.
 Identities = 47/200 (23%), Positives = 85/200 (42%), Gaps = 48/200 (24%)

Query: 990  FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
            FKD + ++ A++  S     +T+ Y+R+EFLGD+IL    +     +   +  G L+ ++
Sbjct: 1016 FKDVALVVTALSAPSS--QNVTN-YERIEFLGDSILKLCASITCAANNLEYPEGYLSLVK 1072

Query: 1050 SALVNNIIFASLAVRLGFHHFF---KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGE 1106
              +V+N      AV+ G   F    +H   G   V+Q    M+A+ D +           
Sbjct: 1073 DRIVSNSRLCRAAVKFGLDRFIITKQHTLRGWKRVLQ---AMEAQRDLST---------- 1119

Query: 1107 CDEAEDIEVPKALGDLFESVAGAIYLDSGM-----------------SLDTVWKVYYEIM 1149
                      K L D+ E++ GA  ++ GM                 SLD   ++ Y+  
Sbjct: 1120 ----------KTLADVVEALIGAALIEGGMDKALRCISLFLPDEEWRSLDLGRQILYQAA 1169

Query: 1150 KSEIERLSVSVPKSPIRELL 1169
               +++L V++   P+  LL
Sbjct: 1170 PKSVKKLPVTM--RPVEGLL 1187


>gi|196000070|ref|XP_002109903.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
 gi|190588027|gb|EDV28069.1| hypothetical protein TRIADDRAFT_20536 [Trichoplax adhaerens]
          Length = 190

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 56/145 (38%), Positives = 69/145 (47%), Gaps = 28/145 (19%)

Query: 925  DKSIADCVEALIGAYLIECGPR------GALLF-------MSWLGLKVIPPVTNPESKHL 971
            D+SIA+ VEAL GA  +E G        G L F        +W+ L     VT+P  +  
Sbjct: 49   DRSIANGVEALFGAMYLENGLDRVREIFGKLTFDDDSELMGTWMNL-----VTHPLQEQF 103

Query: 972  SD---------VLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT-DCYQRLEFLG 1021
             D           L G   FEESI   FK    L +A TH S  LN LT   YQRLEFLG
Sbjct: 104  PDGDRILIPKSQFLQGLTDFEESIGVEFKHIRLLAKAFTHPSAGLNHLTIGDYQRLEFLG 163

Query: 1022 DAILDYLITRHLYEDERAHSPGTLT 1046
            DAIL Y++  H+Y     +  G L+
Sbjct: 164  DAILSYMLASHVYRQFPHYREGHLS 188


>gi|152976215|ref|YP_001375732.1| ribonuclease III [Bacillus cytotoxicus NVH 391-98]
 gi|189043291|sp|A7GRH9.1|RNC_BACCN RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|152024967|gb|ABS22737.1| Ribonuclease III [Bacillus cytotoxicus NVH 391-98]
          Length = 245

 Score = 73.6 bits (179), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 95/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F++ +   F ++  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFRAFQQKLGITFTNEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  LDTVW    EI+  +I
Sbjct: 108  LSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LDTVWGFLKEIVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 40.4 bits (93), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 20/62 (32%), Positives = 36/62 (58%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  K
Sbjct: 59  RLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLGK 118

Query: 843 FE 844
            E
Sbjct: 119 GE 120


>gi|407453856|ref|YP_006732964.1| ribonuclease III [Chlamydia psittaci 84/55]
 gi|405780615|gb|AFS19365.1| ribonuclease III [Chlamydia psittaci 84/55]
          Length = 223

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 107/235 (45%), Gaps = 41/235 (17%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHL 1033
            L    + E  +N+ F     L+ A+TH SY     T+T+  +RLEFLGDA+L  ++T HL
Sbjct: 4    LINIKEVEAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHL 63

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            +    +   GTL+  R+AL+N +        LG   +          +I +  ++Q E  
Sbjct: 64   FLLFPSMDEGTLSTARAALINAVSCCQYTDALGLGEYL---------LIGKGERIQNERG 114

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             T                      A  +LFE++ GA+YLD G++      V     K +I
Sbjct: 115  RT---------------------SAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDI 153

Query: 1154 ERLSVSVPKSPIREL----LELEP--ENARFSKPEKLADGRRVRVTV--EVFGKG 1200
              L +  PK+ +++L    L   P  +   ++ P+  A G  +RV V  EV+G+G
Sbjct: 154  LPLMLGNPKNRLQQLTQKHLRTLPVYQCESWTSPQG-ASGYHIRVIVNNEVWGEG 207


>gi|242309254|ref|ZP_04808409.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
 gi|239524295|gb|EEQ64161.1| ribonuclease 3 [Helicobacter pullorum MIT 98-5489]
          Length = 224

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 92/191 (48%), Gaps = 42/191 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            F+ F++++ Y FK+++ L +A+TH S   +T     +RLEFLGDA+LD +I   LY+   
Sbjct: 3    FNHFQQTLGYHFKNQNLLKEALTHKSAKKSTHN---ERLEFLGDAVLDLIIGEFLYKKFP 59

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
            +   G L+ +R+++VN   FA +A  LG   +              F+    E +   ++
Sbjct: 60   SSPEGELSKMRASMVNEKAFAKIARYLGIGEYL-------------FISHSEEQNHGRDK 106

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
            +                   L + FE++ GAIYL+SG  L+ V K+  +I       L +
Sbjct: 107  D-----------------SILSNAFEAIIGAIYLESG--LEKVQKIVLKI-------LEI 140

Query: 1159 SVPKSPIRELL 1169
              PK  I+ L 
Sbjct: 141  LYPKIDIQHLF 151


>gi|350289218|gb|EGZ70443.1| P-loop containing nucleoside triphosphate hydrolase protein
            [Neurospora tetrasperma FGSC 2509]
          Length = 1547

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 80/298 (26%), Positives = 134/298 (44%), Gaps = 62/298 (20%)

Query: 778  GPSP-KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
            GP+  +RLE IGD+ LK+   +     +PN HE  LS  + K V+N  L +  +     E
Sbjct: 1006 GPTNYERLEFIGDTILKFCACLTASALFPNHHERLLSQWKDKLVNNVRLCRASRDFGLDE 1065

Query: 837  SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQ 896
             +I +    +        + PK++E  L E   P S          +++S + V ++++ 
Sbjct: 1066 YIIHSAASKK--------WRPKFVEDYLDEMKSPES-------AETRQMSSKMVADVVES 1110

Query: 897  ------KCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALL 950
                   C  +   ++  V  ++P    +Q    + S++        A L E  P+ A+L
Sbjct: 1111 LIGAAYMCGGMSKALEC-VALLLPTPKSSQFKWQEISLSR-------AQLFEFAPKDAIL 1162

Query: 951  FMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHAS-YFLNT 1009
                             SK L        +  E++++Y F  KS L++AMTH S   L+T
Sbjct: 1163 -----------------SKQL--------EPLEKAMSYTFHKKSLLIEAMTHPSCAGLST 1197

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYED----ERAHSPGTLTDLRSALVNNIIFASLAV 1063
               CY+ LEFLGDAILD ++ + L  +    E AH+   + +  S++V   I A LA+
Sbjct: 1198 NESCYELLEFLGDAILDVIVVKRLMAETGPNELAHN--DMHEHLSSVVTADIMAFLAM 1253



 Score = 43.9 bits (102), Expect = 0.57,   Method: Compositional matrix adjust.
 Identities = 47/174 (27%), Positives = 77/174 (44%), Gaps = 26/174 (14%)

Query: 1014 YQRLEFLGDAILDY---LITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
            Y+RLEF+GD IL +   L    L+ +   H    L+  +  LVNN+     +   G   +
Sbjct: 1010 YERLEFIGDTILKFCACLTASALFPN---HHERLLSQWKDKLVNNVRLCRASRDFGLDEY 1066

Query: 1071 FKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIE--VPKALGDLFESVAG 1128
              H S    +   +FV            E YL E +  E+ +      K + D+ ES+ G
Sbjct: 1067 IIH-SAASKKWRPKFV------------EDYLDEMKSPESAETRQMSSKMVADVVESLIG 1113

Query: 1129 AIYLDSGMS--LDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK 1180
            A Y+  GMS  L+ V  +      S+ +   +S+ ++   +L E  P++A  SK
Sbjct: 1114 AAYMCGGMSKALECVALLLPTPKSSQFKWQEISLSRA---QLFEFAPKDAILSK 1164


>gi|86152331|ref|ZP_01070542.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315125039|ref|YP_004067043.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
 gi|85840820|gb|EAQ58071.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 260.94]
 gi|315018761|gb|ADT66854.1| ribonuclease III [Campylobacter jejuni subsp. jejuni ICDCCJ07001]
          Length = 224

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 51/163 (31%), Positives = 79/163 (48%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLERSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F              F+ +  +N+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------FMSVAEKNN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                     G+       E P  L D  E++ GAI+L++G   
Sbjct: 103  --------GGK-------EKPSILSDALEAIIGAIHLEAGFEF 130


>gi|355716698|gb|AES05694.1| ribonuclease type III, nuclear [Mustela putorius furo]
          Length = 593

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 292  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 351

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 352  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 410

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 411  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 449

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 450  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 499

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 500  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 559

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 560  ERIGCGKGPSIQQAEMGAAMDALE 583



 Score = 45.8 bits (107), Expect = 0.17,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 219  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 270

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 271  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 308

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 309  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 355



 Score = 40.4 bits (93), Expect = 5.8,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I
Sbjct: 397 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 454


>gi|419659778|ref|ZP_14190291.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
 gi|419667284|ref|ZP_14197262.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
 gi|380638585|gb|EIB56135.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-979]
 gi|380646268|gb|EIB63243.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-10]
          Length = 224

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F               + +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDTLEAIIGAIHLEAGFEF 130


>gi|152989964|ref|YP_001355686.1| ribonuclease III [Nitratiruptor sp. SB155-2]
 gi|189043328|sp|A6Q1H0.1|RNC_NITSB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|151421825|dbj|BAF69329.1| ribonuclease III [Nitratiruptor sp. SB155-2]
          Length = 226

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 79/160 (49%), Gaps = 37/160 (23%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHLYED 1036
             ++FE+ + Y F+DK  L +A+TH SY   +N      +RLEFLGDA+LD ++  +L++ 
Sbjct: 4    LEEFEKKLGYSFEDKKLLKEALTHKSYKSPVNN-----ERLEFLGDAVLDLVVGEYLFKK 58

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                + G L+ LR++LVN   FA LA +L    +              F+    EN+   
Sbjct: 59   FPKANEGELSKLRASLVNEEGFAKLAQKLDIGKYI-------------FISQAEENN--- 102

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                   +G          P  L + FE+V GAIYL+ G+
Sbjct: 103  -------QGRTK-------PSLLSNAFEAVMGAIYLEKGL 128


>gi|54297783|ref|YP_124152.1| ribonuclease III [Legionella pneumophila str. Paris]
 gi|148359410|ref|YP_001250617.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|296107456|ref|YP_003619157.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|397667593|ref|YP_006509130.1| RNase III [Legionella pneumophila subsp. pneumophila]
 gi|81370372|sp|Q5X446.1|RNC_LEGPA RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|189043325|sp|A5ID21.1|RNC_LEGPC RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|53751568|emb|CAH12986.1| hypothetical protein lpp1834 [Legionella pneumophila str. Paris]
 gi|148281183|gb|ABQ55271.1| ribonuclease III [Legionella pneumophila str. Corby]
 gi|295649358|gb|ADG25205.1| ribonuclease III [Legionella pneumophila 2300/99 Alcoy]
 gi|395131004|emb|CCD09253.1| RNase III [Legionella pneumophila subsp. pneumophila]
          Length = 224

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 68/251 (27%), Positives = 107/251 (42%), Gaps = 50/251 (19%)

Query: 986  INYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTL 1045
            +NY F + +YL QA+TH S      +D Y+R EFLGD+IL ++I   L+     HS G L
Sbjct: 12   LNYHFNNIAYLKQALTHCS----AGSDNYERFEFLGDSILSFVIANELFNRFPLHSEGQL 67

Query: 1046 TDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEG 1105
            + LRS LV   + A +A  +G   +                              +L +G
Sbjct: 68   SRLRSFLVKGEMLAEIAREIGLGDYL-----------------------------FLGQG 98

Query: 1106 ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL--DTVWKVYYEIMKSEIERLSVSVPKS 1163
            E   +        L D  E++  AIYLD GM+     +  +Y   +        +   K+
Sbjct: 99   EL-RSGGFRRTSILADALEAILAAIYLDGGMTAAKQIILMLYSSRLDDPDLNHCLKDAKT 157

Query: 1164 PIRELLELEPENARFSKPEKL---------ADGRRVRVTVEVFGKGSYKGIGRNYCIAKC 1214
             ++E L+     ++F+ PE +         A    V  T+E   + +Y G G N   A+ 
Sbjct: 158  QLQEFLQA----SKFALPEYVLTKIEGDEHAQIFHVTCTIEGVSQVAY-GTGPNRRKAEQ 212

Query: 1215 TAAKCALKHLK 1225
             AAK  L+ L+
Sbjct: 213  LAAKAMLEQLQ 223


>gi|86149260|ref|ZP_01067491.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88596211|ref|ZP_01099448.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|218563224|ref|YP_002345004.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
            ATCC 700819]
 gi|317511632|ref|ZP_07968930.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
 gi|384448848|ref|YP_005656899.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
 gi|403056346|ref|YP_006633751.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
            11168-BN148]
 gi|407942970|ref|YP_006858617.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
 gi|415731373|ref|ZP_11473447.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|419620986|ref|ZP_14154381.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
 gi|419623819|ref|ZP_14156940.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
 gi|419625061|ref|ZP_14158085.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
 gi|419628386|ref|ZP_14161245.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
 gi|419629909|ref|ZP_14162621.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
 gi|419630965|ref|ZP_14163565.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
 gi|419633703|ref|ZP_14166131.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
 gi|419635954|ref|ZP_14168241.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
 gi|419637815|ref|ZP_14169964.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
 gi|419639421|ref|ZP_14171450.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
 gi|419645376|ref|ZP_14176925.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
 gi|419647079|ref|ZP_14178522.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
 gi|419649109|ref|ZP_14180411.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
 gi|419650140|ref|ZP_14181366.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
 gi|419651560|ref|ZP_14182656.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
 gi|419656399|ref|ZP_14187201.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
 gi|419658399|ref|ZP_14189029.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
 gi|419661780|ref|ZP_14192099.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
 gi|419663951|ref|ZP_14194134.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
 gi|419671772|ref|ZP_14201414.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
 gi|419673128|ref|ZP_14202607.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
 gi|419675820|ref|ZP_14205079.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
 gi|419677786|ref|ZP_14206919.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
 gi|419679551|ref|ZP_14208544.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
 gi|419681434|ref|ZP_14210268.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
 gi|419684794|ref|ZP_14213374.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
 gi|419687924|ref|ZP_14216256.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
 gi|419690916|ref|ZP_14219105.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
 gi|419696155|ref|ZP_14224025.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
 gi|424849058|ref|ZP_18273527.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
 gi|22654076|sp|Q9PM40.1|RNC_CAMJE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|85840042|gb|EAQ57300.1| ribonuclease III [Campylobacter jejuni subsp. jejuni CF93-6]
 gi|88191052|gb|EAQ95024.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 84-25]
 gi|112360931|emb|CAL35732.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC 11168 =
            ATCC 700819]
 gi|284926829|gb|ADC29181.1| ribonuclease III [Campylobacter jejuni subsp. jejuni IA3902]
 gi|315927617|gb|EFV06948.1| ribonuclease III [Campylobacter jejuni subsp. jejuni DFVF1099]
 gi|315928870|gb|EFV08132.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 305]
 gi|356487695|gb|EHI17637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni D2600]
 gi|380597882|gb|EIB18338.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51494]
 gi|380599969|gb|EIB20317.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23218]
 gi|380604482|gb|EIB24496.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23263]
 gi|380605405|gb|EIB25378.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23223]
 gi|380606913|gb|EIB26800.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 60004]
 gi|380611214|gb|EIB30771.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 55037]
 gi|380611347|gb|EIB30900.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23269]
 gi|380611932|gb|EIB31472.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23264]
 gi|380614766|gb|EIB34092.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9879]
 gi|380616423|gb|EIB35627.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 86605]
 gi|380620465|gb|EIB39355.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9081]
 gi|380621996|gb|EIB40766.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 53161]
 gi|380625526|gb|EIB44108.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 9217]
 gi|380628846|gb|EIB47133.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-1025]
 gi|380631159|gb|EIB49369.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-894]
 gi|380633483|gb|EIB51436.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-1]
 gi|380635405|gb|EIB53222.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-988]
 gi|380639431|gb|EIB56924.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 2008-831]
 gi|380641974|gb|EIB59278.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-4]
 gi|380648961|gb|EIB65749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1997-14]
 gi|380651181|gb|EIB67749.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 110-21]
 gi|380653448|gb|EIB69868.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87330]
 gi|380654393|gb|EIB70755.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 51037]
 gi|380657044|gb|EIB73153.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 87459]
 gi|380658109|gb|EIB74142.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 140-16]
 gi|380666172|gb|EIB81720.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1577]
 gi|380666470|gb|EIB82007.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1854]
 gi|380668031|gb|EIB83415.1| ribonuclease III [Campylobacter jejuni subsp. jejuni 1893]
 gi|380675351|gb|EIB90258.1| ribonuclease III [Campylobacter jejuni subsp. jejuni LMG 23210]
 gi|401781998|emb|CCK67709.1| ribonuclease III [Campylobacter jejuni subsp. jejuni NCTC
            11168-BN148]
 gi|407906808|gb|AFU43637.1| ribonuclease III [Campylobacter jejuni subsp. jejuni PT14]
          Length = 224

 Score = 73.6 bits (179), Expect = 7e-10,   Method: Composition-based stats.
 Identities = 50/163 (30%), Positives = 77/163 (47%), Gaps = 33/163 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD ++  +L+ 
Sbjct: 1    MKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 + G L+ LR+ALVN   FA +A  L    F               + +  EN+  
Sbjct: 58   KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN-- 102

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
                              E P  L D  E++ GAI+L++G   
Sbjct: 103  ---------------GGKEKPSILSDALEAIIGAIHLEAGFEF 130


>gi|307448395|pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation
            Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
            Campylobacter Jejuni
 gi|307448397|pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer Formation
            Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
            Campylobacter Jejuni
          Length = 170

 Score = 73.6 bits (179), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)

Query: 967  ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
            E+ +     +   +K E+S+ Y FKDK+ L+ A+TH S F  +  +  +RLEFLGDA+LD
Sbjct: 16   ENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLD 72

Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
             ++  +L+      + G L+ LR+ALVN   FA +A  L    F               +
Sbjct: 73   LVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LM 119

Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
             +  EN+                    E P  L D  E++ GAI+L++G   
Sbjct: 120  SVAEENN-----------------GGKEKPSILSDALEAIIGAIHLEAGFEF 154


>gi|296273889|ref|YP_003656520.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
 gi|296098063|gb|ADG94013.1| ribonuclease III [Arcobacter nitrofigilis DSM 7299]
          Length = 223

 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 68/262 (25%), Positives = 124/262 (47%), Gaps = 50/262 (19%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRH 1032
            ++ +   E+ ++Y+FK+K  +++A+TH S+   + N      +RLEFLGDA+L+ ++  +
Sbjct: 1    MNDYVNLEKCLDYQFKNKDLIVEALTHKSFKKPYNN------ERLEFLGDAVLNLIVGEY 54

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            LY+     + G L+ +R++LVN   F  LA                             N
Sbjct: 55   LYKKFPQSNEGDLSKIRASLVNETGFTKLA-----------------------------N 85

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
            +  L    YL   E +  +       L D FES+ GAIYL+SG  L+T+  +   +++  
Sbjct: 86   EIKLGDYIYLSIAE-ERNKGRTKASILSDAFESIMGAIYLESG--LETLKPIILTLLEKS 142

Query: 1153 IERLSVSVPKSPIRELLELEPENARF-SKPEKLADG-------RRVRVTVEVFGKGSYKG 1204
             +++++ V  S  +  L+ E   A F S P+   +G       +   V++ +  +   + 
Sbjct: 143  YDKINLDVLFSDYKTALQ-EITQAEFGSIPDYKIEGSYGPDHKKEFEVSIWINNQCYGQA 201

Query: 1205 IGRNYCIAKCTAAKCALKHLKS 1226
            IG++  +A+   AK AL  LK 
Sbjct: 202  IGKSKKLAQQAVAKIALDKLKG 223


>gi|29840106|ref|NP_829212.1| ribonuclease III [Chlamydophila caviae GPIC]
 gi|33301541|sp|Q823R4.1|RNC_CHLCV RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|29834454|gb|AAP05090.1| ribonuclease III [Chlamydophila caviae GPIC]
          Length = 237

 Score = 73.6 bits (179), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 64/229 (27%), Positives = 104/229 (45%), Gaps = 39/229 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            + E  +N+ F     L+ A+TH SY     T+T+  +RLEFLGDA+L  ++T HL+    
Sbjct: 9    EVEAKLNFTFTQPKLLVTALTHPSYRNETVTITEDSERLEFLGDAVLCLIVTEHLFLLFP 68

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
            +   GTL+  R+AL+N +        LG          G H +I +  ++Q E   T   
Sbjct: 69   SMDEGTLSTARAALINAVSCCQYTDALGL---------GEHLLIGKGERIQNERGRT--- 116

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSV 1158
                               A  +LFE+V GA+YLD G++      V     K +I  L +
Sbjct: 117  ------------------SAYANLFEAVLGAVYLDGGLAPARQITVPLLPSKKDILPLML 158

Query: 1159 SVPKSPIRELLELEPENARFSK-----PEKLADGRRVRVTV--EVFGKG 1200
              PK+ +++L + +       +      ++   G  +RV V  EV+G+G
Sbjct: 159  GNPKNRLQQLTQKQLRTLPVYQCTPWTSQQGVPGYHIRVIVNDEVWGEG 207


>gi|424776467|ref|ZP_18203448.1| ribonuclease III [Alcaligenes sp. HPC1271]
 gi|422888287|gb|EKU30676.1| ribonuclease III [Alcaligenes sp. HPC1271]
          Length = 252

 Score = 73.2 bits (178), Expect = 8e-10,   Method: Composition-based stats.
 Identities = 55/191 (28%), Positives = 89/191 (46%), Gaps = 36/191 (18%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
             E +I Y FKD   L QA+TH S+         +RLEFLGD++L++ +   L++  +   
Sbjct: 7    LEAAIGYSFKDTGLLEQALTHRSHSARH----NERLEFLGDSVLNFTVAALLFDRFQRID 62

Query: 1042 PGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYY 1101
             G L+ LR+ LV     A +A RLG   + +                             
Sbjct: 63   EGDLSRLRANLVKQAALAEIATRLGLSDYLR----------------------------- 93

Query: 1102 LMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKSEIERLSVSV 1160
            L EGE  ++     P  L D  E++ GA++LD+G +   TV    YE M  +++  ++  
Sbjct: 94   LGEGEL-KSGGFRRPSILADALEAIFGAVFLDAGFTQAQTVITQLYEPMLVDVDPKTLGK 152

Query: 1161 -PKSPIRELLE 1170
             PK+ ++ELL+
Sbjct: 153  DPKTLLQELLQ 163


>gi|296089027|emb|CBI38730.3| unnamed protein product [Vitis vinifera]
          Length = 1474

 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 45/149 (30%), Positives = 75/149 (50%), Gaps = 16/149 (10%)

Query: 319  FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
            FYV  +  ++   + FP +        Y ++ +YY  KYG+++   +QPL+     S   
Sbjct: 1233 FYVDSVRYDMTAENSFPRKEGYLGPLEYSSYADYYRQKYGVELIYKQQPLIRGRGVSYCK 1292

Query: 374  NFLTPRYVNRKGINLATTSEETRREIRESLGKKQ--LLVPELCLIHPFPASLWRKSVSLP 431
            N L+PR+ +         SE    E  E+L K     L PELC +HP P SL R +  LP
Sbjct: 1293 NLLSPRFEH---------SEAHEGESDETLDKTYYVFLPPELCFVHPLPGSLVRSAQRLP 1343

Query: 432  SILYRLNALLLADEIRTAVASEIGLGKVI 460
            SI+ R+ ++LLA +++  +   +   K++
Sbjct: 1344 SIMRRVESMLLAVQLKDVINYPVPAAKIL 1372



 Score = 57.8 bits (138), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 26/72 (36%), Positives = 42/72 (58%), Gaps = 1/72 (1%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +R E +GD++LK+ ++ FL+  YP  HEG+L+ +R + VSN  L++    K     + A 
Sbjct: 1387 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQSALCKGLQSYIQAD 1446

Query: 842  KFEPRDNWLPPG 853
            +F P   W  PG
Sbjct: 1447 RFAP-SRWAAPG 1457



 Score = 56.2 bits (134), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 77/161 (47%), Gaps = 16/161 (9%)

Query: 1   MDNAIFIVNRYCARLPSDIFTRLAP-IITISEIKEDDSIMFTCSIRLPINSPLKRSVTGH 59
           +++A+ +++ YC++LPSD ++ L P  I     K      ++C ++LP N+P ++ + G 
Sbjct: 845 LNSAVGLIHFYCSQLPSDRYSILRPEFIMERHEKPGGPTEYSCKLQLPCNAPFEK-LEGP 903

Query: 60  KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
              +  LA +   + AC+ L+E+    + L+P         E  E  V +  E +  P +
Sbjct: 904 VCSSMRLAQQAVCLAACKKLHEMGAFTDMLLPDKGSG----EEGEK-VDQNDEGDPLPGT 958

Query: 120 TKRRQFYHKRMASCFT---------NCRPSVNTPCYLYAVK 151
            + R+FY + +A+             C  S     Y+YAVK
Sbjct: 959 ARHREFYPEGVANVLQGEWILLGKDGCNSSRLVHLYMYAVK 999



 Score = 46.6 bits (109), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 28/92 (30%), Positives = 49/92 (53%), Gaps = 4/92 (4%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            + ++ INY     + +L+A+T AS      T CY+R E LGDA L ++++R L+      
Sbjct: 1357 QLKDVINYPVP-AAKILEALTAASC---QETFCYERAELLGDAYLKWVVSRFLFLKYPQK 1412

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
              G LT +R  +V+N++    A+  G   + +
Sbjct: 1413 HEGQLTRMRQQMVSNMVLYQSALCKGLQSYIQ 1444


>gi|297463231|ref|XP_002702571.1| PREDICTED: ribonuclease 3 [Bos taurus]
 gi|297487774|ref|XP_002696435.1| PREDICTED: ribonuclease 3 isoform 1 [Bos taurus]
 gi|296475747|tpg|DAA17862.1| TPA: ribonuclease III, nuclear-like isoform 1 [Bos taurus]
          Length = 1367

 Score = 73.2 bits (178), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1032 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1091

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FE++I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1092 ETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1150

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1151 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1189

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1190 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1239

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1240 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1299

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1300 ERIGCGKGPSIQQAEMGAAMDALE 1323



 Score = 46.6 bits (109), Expect = 0.087,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 876  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 935

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 936  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 995

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 996  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1027

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1028 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1083

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1084 PNTDRQLIETSP 1095



 Score = 40.8 bits (94), Expect = 4.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1137 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1195


>gi|57234229|ref|YP_181741.1| ribonuclease III [Dehalococcoides ethenogenes 195]
 gi|90101623|sp|Q3Z7Q8.1|RNC_DEHE1 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|57224677|gb|AAW39734.1| ribonuclease III [Dehalococcoides ethenogenes 195]
          Length = 237

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 82/270 (30%), Positives = 128/270 (47%), Gaps = 60/270 (22%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
            + E+S+  +F++ S L QA+ H S+     N L+   +R+EFLGDA+L  +    LY D 
Sbjct: 6    ELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADRLYHDF 65

Query: 1038 RAHSPGTLTDLRSALVN--NIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                 G LT  RS LV   +++  +L + LG     K+L                     
Sbjct: 66   PDIQEGDLTRFRSLLVRRESLVRVALGINLG-----KYL--------------------- 99

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                 YL  GE D ++    P  L   FE+V  AIYLD G  +D   +V + + K+E+ER
Sbjct: 100  -----YLGRGE-DASKGRFKPANLAGAFEAVLAAIYLDKG--IDATREVIFRLFKTEMER 151

Query: 1156 ---LSVSVP-KSPIRELL----ELEPENA--RFSKPEK----LADGRRVRVTVEVFGKGS 1201
               LS ++  KS ++EL+    +L P      FS PE     +A+   V    +V  +GS
Sbjct: 152  VQTLSSNIDYKSRLQELVQAQFQLTPRYRIIDFSGPEHNHLFIAE---VYTEDKVLAEGS 208

Query: 1202 YKGIGRNYCIAKCTAAKCALKHLKSAKPAD 1231
                GR+   A+ +AAK AL+  +++  A+
Sbjct: 209  ----GRSKKEAETSAAKEALQQFENSFTAE 234


>gi|451996502|gb|EMD88969.1| hypothetical protein COCHEDRAFT_1143131 [Cochliobolus heterostrophus
            C5]
          Length = 1426

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 156/391 (39%), Gaps = 98/391 (25%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GD  LK+  ++ L  T+  + EG L+  + K VSN  L +              
Sbjct: 973  QRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKGKLVSNGYLARAA------------ 1020

Query: 842  KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
                          + K L+  ++   F  + W            P  V +++       
Sbjct: 1021 --------------LAKGLDGFILYKRFTGAKWK-----------PRYVSQMLSIT---- 1051

Query: 902  DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
                          N  T+     K IAD +E+LIGA  +  G   A     +  +K + 
Sbjct: 1052 --------------NPPTKQERSSKLIADVIESLIGASYVVGGFSKA-----FACVKALL 1092

Query: 962  PVTN----PESKHLSDVLLD---------GFDKFEESINYRFKDKSYLLQAMTHASY-FL 1007
            P+ N    P++   +D L +         G    E  + + F +K+ LL+A+TH ++  L
Sbjct: 1093 PLENWMPIPQA---NDTLYNAAPEQDSVVGAITVENLVGHAFNNKALLLEALTHPTFRGL 1149

Query: 1008 NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
            NT    Y+R EFLGDA+LDY++++ LY          +  +R+A+VN    A        
Sbjct: 1150 NTFCS-YEREEFLGDAVLDYIVSKRLYSHRPELPHYKMHGIRTAMVNASFLAYSMFETTV 1208

Query: 1068 HHFFKH---LSPGLHE-VIQRFVKMQAENDFTLN----QEYYLMEGECDEAEDIEV---- 1115
               F +   L P  H+  + +F++  +    T      Q +     +  EA   +     
Sbjct: 1209 EEVFTNKETLQPEAHQKALWQFLRFTSHELVTSRNLAIQRHSEARIQIAEALQHDARFPW 1268

Query: 1116 --------PKALGDLFESVAGAIYLDSGMSL 1138
                    PK L D+ ES+ GA+Y+DS  SL
Sbjct: 1269 HALSLTDPPKFLSDIVESMIGALYIDSHGSL 1299



 Score = 45.1 bits (105), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 54/124 (43%), Gaps = 13/124 (10%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD IL ++ + HL         G LT  +  LV+N   A  A+  G   F   
Sbjct: 972  YQRLEFLGDCILKFITSLHLMATHLRMPEGMLTGKKGKLVSNGYLARAALAKGLDGFI-- 1029

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   + +RF   + +  + ++Q   +      +       K + D+ ES+ GA Y+ 
Sbjct: 1030 -------LYKRFTGAKWKPRY-VSQMLSITNPPTKQERS---SKLIADVIESLIGASYVV 1078

Query: 1134 SGMS 1137
             G S
Sbjct: 1079 GGFS 1082


>gi|440912593|gb|ELR62150.1| Ribonuclease 3, partial [Bos grunniens mutus]
          Length = 1368

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 1033 AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1092

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FE++I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1093 ETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1151

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1152 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1190

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1191 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1240

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1241 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1300

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1301 ERIGCGKGPSIQQAEMGAAMDALE 1324



 Score = 46.6 bits (109), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 877  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 936

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 937  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 996

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 997  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 1028

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 1029 --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1084

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1085 PNTDRQLIETSP 1096



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1138 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1196


>gi|157326505|gb|ABV44384.1| ASL1/DROSHA fusion [Mus musculus]
          Length = 756

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 421  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 480

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 481  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 539

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 540  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 578

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 579  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 628

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 629  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 688

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 689  ERIGCGKGPSIQQAEMGAAMDALE 712



 Score = 45.8 bits (107), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 34/122 (27%), Positives = 56/122 (45%), Gaps = 30/122 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 348  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 399

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 400  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 437

Query: 1135 GM 1136
             +
Sbjct: 438  SL 439



 Score = 40.4 bits (93), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 526 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 584


>gi|329942692|ref|ZP_08291471.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|332287287|ref|YP_004422188.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|384450439|ref|YP_005663039.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|384451441|ref|YP_005664039.1| ribonuclease III [Chlamydophila psittaci 01DC11]
 gi|384452414|ref|YP_005665011.1| ribonuclease III [Chlamydophila psittaci 08DC60]
 gi|384453390|ref|YP_005665986.1| ribonuclease III [Chlamydophila psittaci C19/98]
 gi|384454369|ref|YP_005666964.1| ribonuclease III [Chlamydophila psittaci 02DC15]
 gi|392376528|ref|YP_004064306.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|406593278|ref|YP_006740457.1| ribonuclease III [Chlamydia psittaci NJ1]
 gi|407456552|ref|YP_006735125.1| ribonuclease III [Chlamydia psittaci VS225]
 gi|407460523|ref|YP_006738298.1| ribonuclease III [Chlamydia psittaci WC]
 gi|313847871|emb|CBY16866.1| ribonuclease III [Chlamydophila psittaci RD1]
 gi|325506653|gb|ADZ18291.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|328814952|gb|EGF84941.1| ribonuclease III [Chlamydophila psittaci Cal10]
 gi|328914533|gb|AEB55366.1| ribonuclease III [Chlamydophila psittaci 6BC]
 gi|334692171|gb|AEG85390.1| ribonuclease III [Chlamydophila psittaci C19/98]
 gi|334693151|gb|AEG86369.1| ribonuclease III [Chlamydophila psittaci 01DC11]
 gi|334694126|gb|AEG87343.1| ribonuclease III [Chlamydophila psittaci 02DC15]
 gi|334695103|gb|AEG88319.1| ribonuclease III [Chlamydophila psittaci 08DC60]
 gi|405783813|gb|AFS22560.1| ribonuclease III [Chlamydia psittaci VS225]
 gi|405787528|gb|AFS26272.1| ribonuclease III [Chlamydia psittaci WC]
 gi|405789150|gb|AFS27892.1| ribonuclease III [Chlamydia psittaci NJ1]
          Length = 237

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 65/228 (28%), Positives = 105/228 (46%), Gaps = 41/228 (17%)

Query: 983  EESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            E  +N+ F     L+ A+TH SY     T+T+  +RLEFLGDA+L  ++T HL+    + 
Sbjct: 11   EAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPSM 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              GTL+  R+AL+N +        LG   +          +I +  ++Q E   T     
Sbjct: 71   DEGTLSTARAALINAVSCCQYTDALGLGEYL---------LIGKGERIQNERGRT----- 116

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                             A  +LFE++ GA+YLD G++      V     K +I  L +  
Sbjct: 117  ----------------SAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGN 160

Query: 1161 PKSPIREL----LELEP--ENARFSKPEKLADGRRVRVTV--EVFGKG 1200
            PK+ +++L    L   P  +   ++ P+  A G  +RV V  EV+G+G
Sbjct: 161  PKNRLQQLTQKHLRTLPVYQCESWTSPQG-ASGYHIRVIVNNEVWGEG 207


>gi|296127821|ref|YP_003635073.1| ribonuclease III [Brachyspira murdochii DSM 12563]
 gi|296019637|gb|ADG72874.1| ribonuclease III [Brachyspira murdochii DSM 12563]
          Length = 246

 Score = 73.2 bits (178), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 76/256 (29%), Positives = 119/256 (46%), Gaps = 51/256 (19%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAH 1040
            +E I Y F++KSYLL+A+TH +Y   +       QRLEFLGD++L  +I+ +L++     
Sbjct: 14   QEVIKYEFRNKSYLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYNTS 73

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G L+ ++S+LV+    A ++         K L  G               DF L    
Sbjct: 74   KEGLLSKVKSSLVSQKSLADIS---------KELKLG---------------DFIL---- 105

Query: 1101 YLMEGECDEAEDIEVPKA------LGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKS- 1151
             L  GE       EV         L DLFE++ GAIYLDSG+  +   V K Y   + + 
Sbjct: 106  -LGHGE-------EVSGGRYRDNMLEDLFEAIVGAIYLDSGINNAAQFVMKAYKNRLNNL 157

Query: 1152 EIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRR---VRVTVEVFGKGSYKGIGRN 1208
            +IE       K+  +EL++ + + +   K  +  D       +  V V  K    GIG++
Sbjct: 158  DIENFDKDY-KTIFQELIQKKHKTSPVYKSYEYHDENNHEMFKSEVYVNDKNFSSGIGKS 216

Query: 1209 YCIAKCTAAKCALKHL 1224
               A+  AAK AL+++
Sbjct: 217  KKEAETEAAKKALENI 232


>gi|425626944|gb|AFX89030.1| drosha [Mayetiola destructor]
          Length = 1373

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/327 (26%), Positives = 132/327 (40%), Gaps = 80/327 (24%)

Query: 927  SIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNPESKHLSDV-------LLDGF 979
            ++A+C EAL+GA L++ G   A     W+     PP    E + L D        LL   
Sbjct: 948  AMANCFEALMGALLLDGGIDVADKI--WINY---PPHPLQEQEPLGDRQWIESYPLLKDL 1002

Query: 980  DKFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             KFEES+   FK    L +A T  S  F N      QRLEFLGD +L  + + +LY    
Sbjct: 1003 TKFEESVGISFKHIRLLARAFTDRSIGFTNLTLGSNQRLEFLGDTVLQLICSEYLYRHFP 1062

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
             H  G L+ LRS+LVNN   A +   LG   +  + +P              +N+     
Sbjct: 1063 EHHEGHLSLLRSSLVNNRTQAVVCDDLGMTKYAIYSNP--------------KNELKT-- 1106

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW-------KVYYEIM-- 1149
                              K   DL E+  G++Y+D G+     +       ++   IM  
Sbjct: 1107 ------------------KDRADLLEAFLGSLYVDKGLLFAETFCQVCLFPRLQLFIMNQ 1148

Query: 1150 -----KSEIERLSVSV-------PKSPIRELLELE-PENARFSKPEKLADGRRVRVTVEV 1196
                 KS++++  +++       P  PI +++E   P N R  K           V V  
Sbjct: 1149 DWNDPKSKLQQCCLTLRTMDGGEPDIPIYKVIECTGPTNTRVYK-----------VAVYF 1197

Query: 1197 FGKGSYKGIGRNYCIAKCTAAKCALKH 1223
             GK      G +   A+  AAK AL++
Sbjct: 1198 RGKRLASSTGHSIQQAEMEAAKKALEN 1224



 Score = 55.8 bits (133), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 55/224 (24%), Positives = 86/224 (38%), Gaps = 87/224 (38%)

Query: 978  GFDKFEESINYRFKDKSYLLQ-AMTHASY----------FLNTLTDC------------- 1013
              D  E++I+Y+FK++ YLLQ A+TH SY            N+LT+C             
Sbjct: 784  SLDLLEKNIDYKFKNR-YLLQLALTHPSYKENYGTNPDHARNSLTNCGVRQPEYGDRKIH 842

Query: 1014 -------------------------------YQRLEFLGDAILDYLITRHLYEDERAHSP 1042
                                            +RLEFLGDA++++L + HL+        
Sbjct: 843  YLNTRKRGINTLINIMSRFGKEDETDSNITHNERLEFLGDAVVEFLTSIHLFFMFPDLEE 902

Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
            G L   R+A+V N   A LA +L                                 E+ L
Sbjct: 903  GGLATYRAAIVQNQHLAVLAKKLRL------------------------------DEFML 932

Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL-DTVWKVY 1145
                 D   ++E+  A+ + FE++ GA+ LD G+ + D +W  Y
Sbjct: 933  YAHGSDLCHELELRHAMANCFEALMGALLLDGGIDVADKIWINY 976



 Score = 40.8 bits (94), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 22/48 (45%), Positives = 30/48 (62%)

Query: 775  NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
            N T  S +RLE +GD+ L+   + +LY  +P  HEG LS LRS  V+N
Sbjct: 1032 NLTLGSNQRLEFLGDTVLQLICSEYLYRHFPEHHEGHLSLLRSSLVNN 1079


>gi|4768838|gb|AAD29637.1|AF116910_1 putative ribonuclease III [Homo sapiens]
          Length = 541

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 206  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 265

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 266  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 324

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 325  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 363

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 364  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 413

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 414  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 473

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 474  ERIGCGKGPSIQQAEMGAAMDALE 497



 Score = 45.4 bits (106), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 133  ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 184

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 185  -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 222

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 223  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 269



 Score = 40.8 bits (94), Expect = 5.3,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 311 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 369


>gi|194676595|ref|XP_591998.4| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
 gi|297487776|ref|XP_002696436.1| PREDICTED: ribonuclease 3 isoform 2 [Bos taurus]
 gi|296475748|tpg|DAA17863.1| TPA: ribonuclease III, nuclear-like isoform 2 [Bos taurus]
          Length = 1330

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 92/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 995  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 1054

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FE++I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 1055 ETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 1113

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 1114 ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 1152

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 1153 ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 1202

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 1203 PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 1262

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 1263 ERIGCGKGPSIQQAEMGAAMDALE 1286



 Score = 46.6 bits (109), Expect = 0.098,   Method: Compositional matrix adjust.
 Identities = 56/252 (22%), Positives = 97/252 (38%), Gaps = 96/252 (38%)

Query: 986  INYRFKDKSYLLQAMTHASYFLN----------TLTDC---------------------- 1013
            I Y F+D+  L  AMTH S+ LN          +L++C                      
Sbjct: 839  IGYTFQDRCLLQLAMTHPSHHLNFGMNPDHARNSLSNCGIRQPKYGDRKVHHMHMRKKGI 898

Query: 1014 ----------------------YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051
                                   +RLEFLGDA++++L + HLY    +   G L   R+A
Sbjct: 899  NTLINIMSRLGQDDPTPSRINHNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTA 958

Query: 1052 LVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAE 1111
            +V N   A LA +L                + RF+      D             C E+ 
Sbjct: 959  IVQNQHLAMLAKKL---------------ELDRFMLYAHGPDL------------CRES- 990

Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI---- 1165
              ++  A+ + FE++ GA+YL+   SL+   +++  ++    ++  + ++ P  P+    
Sbjct: 991  --DLRHAMANCFEALIGAVYLEG--SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQE 1046

Query: 1166 ----RELLELEP 1173
                R+L+E  P
Sbjct: 1047 PNTDRQLIETSP 1058



 Score = 40.8 bits (94), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 20/59 (33%), Positives = 34/59 (57%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
            +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I 
Sbjct: 1100 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAIT 1158


>gi|430750346|ref|YP_007213254.1| ribonuclease III [Thermobacillus composti KWC4]
 gi|430734311|gb|AGA58256.1| ribonuclease III [Thermobacillus composti KWC4]
          Length = 233

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 53/164 (32%), Positives = 72/164 (43%), Gaps = 35/164 (21%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            D FD+ ++ +  RFK    L QA TH SY     +   Q   RLEFLGDA++  L++ HL
Sbjct: 4    DRFDQLQQQLGIRFKRTGLLKQAFTHTSYVNEHKSGNAQDNERLEFLGDAVMQLLVSEHL 63

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            Y        G LT +R+++V    FA  A                               
Sbjct: 64   YLMHPRRPEGELTRMRASIVCEPSFAKFAE------------------------------ 93

Query: 1094 FTLNQEYYLMEGECDEAEDIEV-PKALGDLFESVAGAIYLDSGM 1136
             TL+   Y++ G  +E       P  L DLFES  GA+YLDSG+
Sbjct: 94   -TLDLGRYVLLGRGEEQLGGRTRPALLADLFESFIGALYLDSGL 136


>gi|404476274|ref|YP_006707705.1| ribonuclease III [Brachyspira pilosicoli B2904]
 gi|404437763|gb|AFR70957.1| ribonuclease III [Brachyspira pilosicoli B2904]
          Length = 189

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/183 (30%), Positives = 93/183 (50%), Gaps = 39/183 (21%)

Query: 971  LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLI 1029
            ++ +LLD     E+ + Y FK+K+YLL+A+TH +Y        Y QRLEFLGD++L  +I
Sbjct: 2    INKILLD----CEKVLQYSFKNKNYLLEAITHRTYANENGNMKYNQRLEFLGDSVLSLII 57

Query: 1030 TRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQ 1089
            + H+Y++      G L+ +++ LV+    A+++ +L    F                   
Sbjct: 58   SEHIYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLKLGDF------------------- 98

Query: 1090 AENDFTLNQEYYLMEGECDEAE-DIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYY 1146
                        L+ G+ +EA    E    L DLFE++ GAIYLDS +  + + V +VY 
Sbjct: 99   ------------LLLGKGEEASGGRERDNMLEDLFEAIIGAIYLDSNLENTKNFVMRVYK 146

Query: 1147 EIM 1149
            +I+
Sbjct: 147  DIL 149



 Score = 43.1 bits (100), Expect = 0.95,   Method: Composition-based stats.
 Identities = 31/83 (37%), Positives = 41/83 (49%), Gaps = 6/83 (7%)

Query: 774 ENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL------FK 827
           EN      +RLE +GDS L   I+  +Y  Y NV EGKLS +++  VS   L       K
Sbjct: 35  ENGNMKYNQRLEFLGDSVLSLIISEHIYKEYNNVKEGKLSKIKAYLVSQNTLANISRKLK 94

Query: 828 LGKQKVFGESMIATKFEPRDNWL 850
           LG   + G+   A+    RDN L
Sbjct: 95  LGDFLLLGKGEEASGGRERDNML 117


>gi|384208374|ref|YP_005594094.1| ribonuclease III [Brachyspira intermedia PWS/A]
 gi|343386024|gb|AEM21514.1| ribonuclease III [Brachyspira intermedia PWS/A]
          Length = 244

 Score = 73.2 bits (178), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 73/257 (28%), Positives = 123/257 (47%), Gaps = 41/257 (15%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAH 1040
            + +I Y F++K +LL+A+TH +Y   +       QRLEFLGD++L  +I+ +L++   + 
Sbjct: 11   QTAIKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYNSS 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G L+ ++S+LV+    A ++         K L  G               DF      
Sbjct: 71   KEGLLSKVKSSLVSQKSLADIS---------KELKLG---------------DF------ 100

Query: 1101 YLMEGECDEAEDIEV-PKALGDLFESVAGAIYLDSGMSLDT--VWKVYYEIMKS-EIERL 1156
             L+ G  +EA         L DLFE++ GAIYLDSG++  +  V + Y E +K+ +IE  
Sbjct: 101  -LLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGITSASKFVMRAYRERLKNLDIENF 159

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRR---VRVTVEVFGKGSYKGIGRNYCIAK 1213
                 K+  +EL++ + + +   K  +  D       +  V V  K    G+G++   A+
Sbjct: 160  DKDY-KTIFQELIQKKHKTSPIYKSYEYYDDNNHEMFKAEVYVNDKNFALGVGKSKKEAE 218

Query: 1214 CTAAKCALKHLKSAKPA 1230
              AAK AL  ++ A  A
Sbjct: 219  TNAAKKALDKIEMASMA 235


>gi|452943710|ref|YP_007499875.1| ribonuclease III [Hydrogenobaculum sp. HO]
 gi|452882128|gb|AGG14832.1| ribonuclease III [Hydrogenobaculum sp. HO]
          Length = 232

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 51/178 (28%), Positives = 84/178 (47%), Gaps = 32/178 (17%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +D F+  EE I YRF+DK+ + +A TH S+  +  ++ Y+ LEFLGDA+++++    L E
Sbjct: 1    MDSFELLEEKIGYRFRDKNLVKKAFTHISF--SKSSENYEVLEFLGDALVNFMTVNILVE 58

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ L+S L++    ASLA  L F  +          +I +  +++  N   
Sbjct: 59   AFPNKKEGELSQLKSFLISEEFLASLAKSLNFEKYI---------LISKGEELKGSN--- 106

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                              + P  L D+FE+   AIY+DSG        ++    KS+I
Sbjct: 107  ------------------KNPSILCDVFEAFWAAIYIDSGYDCKLTKSLFEHHFKSQI 146


>gi|349603719|gb|AEP99482.1| Ribonuclease 3-like protein, partial [Equus caballus]
          Length = 449

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 93/324 (28%), Positives = 135/324 (41%), Gaps = 60/324 (18%)

Query: 927  SIADCVEALIGAYLIECGPR------GALLFMS------WLGLKVIP-----PVTNPESK 969
            ++A+C EALIGA  +E          G LLF        WL   + P     P T+ +  
Sbjct: 114  AMANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLI 173

Query: 970  HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYL 1028
              S VL     +FEE+I   F     L +A T  +   N LT  + QR+EFLGD+I+  +
Sbjct: 174  ETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLV 232

Query: 1029 ITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM 1088
             T +L+     H  G LT LRS+LVNN   A +A  LG                      
Sbjct: 233  ATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGM--------------------- 271

Query: 1089 QAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKV-YY 1146
                     QEY +   +      +   K L DL ES   A+Y+D  +  + T   V ++
Sbjct: 272  ---------QEYAITNDKTKRPVALRT-KTLADLLESFIAALYIDKDLEYVHTFMNVCFF 321

Query: 1147 EIMKSEIERLSVSVPKSPIRE-LLEL-----EPENARFSKPEKLADGRRVRVTVEVFGKG 1200
              +K  I     + PKS +++  L L     EP+   +   + +        TV V+ KG
Sbjct: 322  PRLKEFILNQDWNDPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKG 381

Query: 1201 SYKGIGRNYCI--AKCTAAKCALK 1222
               G G+   I  A+  AA  AL+
Sbjct: 382  ERIGCGKGPSIQQAEMGAAMDALE 405



 Score = 45.1 bits (105), Expect = 0.23,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 77/169 (45%), Gaps = 42/169 (24%)

Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074
            +RLEFLGDA++++L + HLY    +   G L   R+A+V N   A LA +L         
Sbjct: 41   ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLE-------- 92

Query: 1075 SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS 1134
                   + RF+      D             C E+   ++  A+ + FE++ GA+YL+ 
Sbjct: 93   -------LDRFMLYAHGPDL------------CRES---DLRHAMANCFEALIGAVYLEG 130

Query: 1135 GMSLDTVWKVYYEIM--KSEIERLSVSVPKSPI--------RELLELEP 1173
              SL+   +++  ++    ++  + ++ P  P+        R+L+E  P
Sbjct: 131  --SLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIETSP 177



 Score = 40.8 bits (94), Expect = 5.0,   Method: Compositional matrix adjust.
 Identities = 20/58 (34%), Positives = 34/58 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           +R+E +GDS ++   T +L+  +P+ HEG L+ LRS  V+N    K+ ++    E  I
Sbjct: 219 QRMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 276


>gi|225621561|ref|YP_002722820.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
 gi|225216382|gb|ACN85116.1| ribonuclease III [Brachyspira hyodysenteriae WA1]
          Length = 243

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 68/253 (26%), Positives = 119/253 (47%), Gaps = 40/253 (15%)

Query: 983  EESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAH 1040
            + ++ Y F++K +LL+A+TH +Y   +       QRLEFLGD++L  +I+ +L++   + 
Sbjct: 11   QTALKYEFRNKDHLLEAITHRTYANESKKKMKYNQRLEFLGDSVLSLIISDYLFKKYSSS 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              G L+ ++S+LV+    A ++  L    F                              
Sbjct: 71   KEGLLSKVKSSLVSQKSLADISKELKLGDF------------------------------ 100

Query: 1101 YLMEGECDEAEDIEV-PKALGDLFESVAGAIYLDSGMSLDT--VWKVYYEIMKS-EIERL 1156
             L+ G  +EA         L DLFE++ GAIYLDSG++  +  V + Y E +K+ +IE  
Sbjct: 101  -LLLGHGEEASGGRYRDNMLEDLFEAIVGAIYLDSGITSASKFVMRAYKERLKNLDIENF 159

Query: 1157 SVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF--GKGSYKGIGRNYCIAKC 1214
                 K+  +EL++ + + +   K  +  D        EV+   K    G+G++   A+ 
Sbjct: 160  DKDY-KTIFQELIQKKHKTSPIYKSYEYYDNNHEMFKSEVYVNDKNFALGVGKSKKEAET 218

Query: 1215 TAAKCALKHLKSA 1227
             AAK AL  ++ A
Sbjct: 219  NAAKKALDKIEMA 231


>gi|328767757|gb|EGF77805.1| hypothetical protein BATDEDRAFT_27056 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 380

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL+ +HLY+     +PG L+ L + LV N   A +++++G   
Sbjct: 57   LGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVK 116

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+   L        +        +    PK  GD
Sbjct: 117  YIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGD 176

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 177  VYESMLGAVFVDSQFDIHCVQSMF 200


>gi|328771050|gb|EGF81090.1| hypothetical protein BATDEDRAFT_23768 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 380

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL+ +HLY+     +PG L+ L + LV N   A +++++G   
Sbjct: 57   LGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVK 116

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+   L        +        +    PK  GD
Sbjct: 117  YIRHTDMTMEAAIGRFTAWVQGYLASESSTPLPISTSATQIASARMFWNKGNTAPKTAGD 176

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 177  VYESMLGAVFVDSQFDIHCVQSMF 200


>gi|157737847|ref|YP_001490531.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315637636|ref|ZP_07892842.1| ribonuclease III [Arcobacter butzleri JV22]
 gi|189043289|sp|A8EV88.1|RNC_ARCB4 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|157699701|gb|ABV67861.1| ribonuclease III [Arcobacter butzleri RM4018]
 gi|315478090|gb|EFU68817.1| ribonuclease III [Arcobacter butzleri JV22]
          Length = 224

 Score = 72.8 bits (177), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 116/243 (47%), Gaps = 54/243 (22%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            + K E+ ++Y+FK+K+ +++A+TH S+   + N      +RLEFLGDA+L+ ++  +LY 
Sbjct: 4    YSKLEKCLDYQFKNKNLIIEALTHKSFKKPYNN------ERLEFLGDAVLNLIVGEYLYL 57

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLA--VRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
                 + G L+ +R++LVN   F  LA  ++LG                           
Sbjct: 58   KFPKSNEGELSKIRASLVNETGFTRLANEIKLG--------------------------- 90

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                 EY  +    +  +       L D FE++ GAIYL+SG  L+T+  +   I++   
Sbjct: 91   -----EYIFISTAEERNKGRTKASILSDAFEAIMGAIYLESG--LNTLKPIILRILEESY 143

Query: 1154 ERLSVSVPKSPIRELLELEPENARF-SKPEKLADG-------RRVRVTVEVFGKGSYKGI 1205
            +++++ V  S  +  L+ E   ARF S PE   +G       +   V++ + GK   K  
Sbjct: 144  DKINLDVLFSDYKTALQ-EITQARFASIPEYKIEGSYGPDHKKEFEVSIWIDGKNYGKAS 202

Query: 1206 GRN 1208
            G++
Sbjct: 203  GKS 205



 Score = 40.8 bits (94), Expect = 4.7,   Method: Compositional matrix adjust.
 Identities = 20/65 (30%), Positives = 35/65 (53%)

Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
           RLE +GD+ L   +  +LY  +P  +EG+LS +R+  V+     +L  +   GE +  + 
Sbjct: 38  RLEFLGDAVLNLIVGEYLYLKFPKSNEGELSKIRASLVNETGFTRLANEIKLGEYIFIST 97

Query: 843 FEPRD 847
            E R+
Sbjct: 98  AEERN 102


>gi|394993931|ref|ZP_10386670.1| ribonuclease III [Bacillus sp. 916]
 gi|452855540|ref|YP_007497223.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
            UCMB5036]
 gi|393805255|gb|EJD66635.1| ribonuclease III [Bacillus sp. 916]
 gi|452079800|emb|CCP21557.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum
            UCMB5036]
          Length = 249

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ 
Sbjct: 17   IEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +    KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   +    +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEFVQRDGKGSLEYKILNEKGPAHNREFEALVSLKGEALGIGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 45.1 bits (105), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|328770010|gb|EGF80052.1| hypothetical protein BATDEDRAFT_24776 [Batrachochytrium dendrobatidis
            JAM81]
          Length = 380

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 42/144 (29%), Positives = 72/144 (50%), Gaps = 8/144 (5%)

Query: 1010 LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHH 1069
            L   +QRLEFLGDA+L YL+ +HLY+     +PG L+ L + LV N   A +++++G   
Sbjct: 57   LGSMFQRLEFLGDAVLSYLVMQHLYKITPPLNPGGLSKLCAELVCNQFLACVSIQIGLVK 116

Query: 1070 FFKHLSPGLHEVIQRFVK-----MQAENDFTL---NQEYYLMEGECDEAEDIEVPKALGD 1121
            + +H    +   I RF       + +E+   L        +        +    PK  GD
Sbjct: 117  YIRHTDMTMEAAIGRFATWVQGYLASESSTPLPISTSATQIASARLFWNKGNTAPKTAGD 176

Query: 1122 LFESVAGAIYLDSGMSLDTVWKVY 1145
            ++ES+ GA+++DS   +  V  ++
Sbjct: 177  VYESMLGAVFVDSQFDIHCVQSMF 200


>gi|152993835|ref|YP_001359556.1| ribonuclease III [Sulfurovum sp. NBC37-1]
 gi|189043369|sp|A6QCJ0.1|RNC_SULNB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|151425696|dbj|BAF73199.1| ribonuclease III [Sulfurovum sp. NBC37-1]
          Length = 223

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 67/263 (25%), Positives = 124/263 (47%), Gaps = 54/263 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRH 1032
            ++ + + E+ +NY FKDK  +++A+TH SY   + N      +RLEFLGDA+LD ++  +
Sbjct: 1    MNDYSQLEKRLNYTFKDKQLIIEALTHKSYKKPYNN------ERLEFLGDAVLDLIVGEY 54

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L++       G L+ +R++LVN   F  LA ++    +              ++ +  EN
Sbjct: 55   LFKKFPKSDEGILSKIRASLVNESGFTLLARKIDLGSYI-------------YLSLAEEN 101

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM--- 1149
            +   ++                 P  L + FE++ GA+YL++G  LDT  ++  +++   
Sbjct: 102  NNGRDK-----------------PSLLSNAFEAIIGAVYLEAG--LDTAKEISIKLLEEC 142

Query: 1150 --KSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG-----RRVRVTVEVFGKGSY 1202
              K +++ LS    K+ ++EL   +  +A     E L        +   + V +  K   
Sbjct: 143  HPKIDLQSLSKDY-KTALQEL--TQATHAVTPGYEMLGSSGPDHKKEFEIAVTLDNKTIA 199

Query: 1203 KGIGRNYCIAKCTAAKCALKHLK 1225
               G++   A+  AAK AL+ LK
Sbjct: 200  TAKGKSKKDAQQKAAKIALEALK 222


>gi|406913885|gb|EKD53182.1| hypothetical protein ACD_61C00122G0015 [uncultured bacterium]
          Length = 234

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 72/261 (27%), Positives = 120/261 (45%), Gaps = 46/261 (17%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNT--LTDCYQRLEFLGDAILDYLITRHLYED 1036
             D  ++ I Y FK++S L  A+TH S  LN   +++ Y+RLEFLGDAIL+ LI+ +L+E 
Sbjct: 6    LDPLQDLIGYHFKNESLLETALTHRS-CLNQPGVSESYERLEFLGDAILEMLISIYLFEK 64

Query: 1037 ERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTL 1096
                  G LT  RSA V     + ++V               H     +++M    + T 
Sbjct: 65   YPDKMEGYLTAARSATVRTESLSEVSV---------------HNRFNDYIRMSKGEEVTG 109

Query: 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE--IMKSEIE 1154
             ++   +               L D+ ES+ GA+Y+D G+      K ++E  I+ +   
Sbjct: 110  GRQNLSI---------------LEDVIESLIGALYIDGGLD---AAKNFFESFILPNAQG 151

Query: 1155 RLSVSVPKSPIRELLELEPENARFSKP-------EKLADGRRVRVTVEVFGKGSYKGIGR 1207
             ++++  K P + LL+ + ++A  S P         L   +   V V + GK    G G+
Sbjct: 152  IIALNRLKDP-KSLLQEKVQSAGQSSPIYQTIGESGLDHNKTFEVAVSIEGKQLASGTGK 210

Query: 1208 NYCIAKCTAAKCALKHLKSAK 1228
            N   A+  AA+ AL  L + +
Sbjct: 211  NKQEAEQKAAQKALDALPAGR 231


>gi|321463679|gb|EFX74693.1| hypothetical protein DAPPUDRAFT_251616 [Daphnia pulex]
          Length = 233

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 54/158 (34%), Positives = 78/158 (49%), Gaps = 27/158 (17%)

Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
            +L  L++ HL++    ++P  L+  RSA+ +N  F  LAV+ GFH   K L     EV Q
Sbjct: 2    LLSLLVSTHLFDYSEEYTPSHLSRFRSAITSNDCFGVLAVKFGFH---KDLRGAPIEVQQ 58

Query: 1084 R-------FVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
            R       F++++A    T N  Y          E + VP  L DLFE+VAGAIY DSG 
Sbjct: 59   RVNEFADLFLRLKA----TPNNGY-------ATTESLVVPGVLADLFEAVAGAIYKDSGF 107

Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELL-ELEP 1173
            S   V   +   ++   +  S+     P  E+L EL+P
Sbjct: 108  SRIAVLGSFNPFLRQAYDHFSL-----PADEILQELKP 140


>gi|308173556|ref|YP_003920261.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|384159423|ref|YP_005541496.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|384164142|ref|YP_005545521.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
 gi|384168470|ref|YP_005549848.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
 gi|307606420|emb|CBI42791.1| ribonuclease III [Bacillus amyloliquefaciens DSM 7]
 gi|328553511|gb|AEB24003.1| ribonuclease III [Bacillus amyloliquefaciens TA208]
 gi|328911697|gb|AEB63293.1| ribonuclease III [Bacillus amyloliquefaciens LL3]
 gi|341827749|gb|AEK89000.1| ribonuclease III [Bacillus amyloliquefaciens XH7]
          Length = 249

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 74/257 (28%), Positives = 116/257 (45%), Gaps = 37/257 (14%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ 
Sbjct: 17   IEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVYYEIMKS 1151
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +    KVY     +
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLEPVQQFLKVYVFPKIN 166

Query: 1152 EIERLSVSVPKSPIRELLELEPENA---RFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
            +     V   KS ++E ++ + + +   +    +  A  R     V + G+    G GR+
Sbjct: 167  DGAFSHVMDFKSQLQEFVQRDGKGSLEYKILNEKGPAHNREFEALVSLKGEALGIGNGRS 226

Query: 1209 YCIAKCTAAKCALKHLK 1225
               A+  AA+ AL  L+
Sbjct: 227  KKEAEQHAAQEALAKLQ 243



 Score = 44.7 bits (104), Expect = 0.31,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|118580198|ref|YP_901448.1| ribonuclease III [Pelobacter propionicus DSM 2379]
 gi|118502908|gb|ABK99390.1| RNAse III [Pelobacter propionicus DSM 2379]
          Length = 234

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/192 (29%), Positives = 90/192 (46%), Gaps = 33/192 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
            + E  I YRF D++ LLQA+TH S+         YQRLEFLGDA+L  ++   L+     
Sbjct: 7    ELEREIAYRFIDQAPLLQALTHPSFEHEQAGGGNYQRLEFLGDAVLGMVLAEMLFRRFPD 66

Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
             + G L+ LRS + +    A +A   G               + RFV++    +      
Sbjct: 67   SNEGVLSRLRSQIADQDTLAGIARSFG---------------LGRFVRLGRGEE------ 105

Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM--SLDTVWKVYYEIMKSEIERLS 1157
                +G     + I     L D+ E++  A+YLD G+  S   + +++  I++S   RL 
Sbjct: 106  ----QGAGRNKDSI-----LADVLEALIAAVYLDGGLKESRRLIQRLFVAILESRGARLR 156

Query: 1158 VSVPKSPIRELL 1169
             +  KS ++ELL
Sbjct: 157  FNDAKSELQELL 168


>gi|28189651|dbj|BAC56440.1| similar to hypothetical protein [Bos taurus]
          Length = 149

 Score = 72.4 bits (176), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 35/62 (56%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
           +C VD   QS+  Y+L T+  I DKSIADCVEAL+G YL  CG R A LF+  LGLKV+P
Sbjct: 50  NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 108

Query: 962 PV 963
            +
Sbjct: 109 VI 110


>gi|291288904|ref|YP_003505720.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
 gi|290886064|gb|ADD69764.1| ribonuclease III [Denitrovibrio acetiphilus DSM 12809]
          Length = 235

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/257 (28%), Positives = 114/257 (44%), Gaps = 40/257 (15%)

Query: 980  DKFEESINYRFKDKSYLLQAMTHASYFLNTLT-DCYQRLEFLGDAILDYLITRHLYEDER 1038
            D  E  + Y F DKS +L+A+TH SY         Y+RLEFLGDA+L  ++T +L +  +
Sbjct: 11   DSLEGRLGYHFSDKSIVLEALTHRSYAHEKKNKQNYERLEFLGDAVLQLIVTEYLLDRYK 70

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
             +  G L+ LR   V+    + +A+ L           G H ++ +  K           
Sbjct: 71   DYDEGLLSKLRGYFVSEGFLSRIAIELKL---------GEHILLGKGEKASG-------- 113

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL--DTVWKVYYEIMKSEIERL 1156
                  G+  E+        L D+FESV  AIYLD G     D + + +   +  +I   
Sbjct: 114  ------GKYKES-------LLCDIFESVVAAIYLDGGYGFARDIIIRHFGSRIDEDISNS 160

Query: 1157 SVSVPKSPIRELLELE----PENARFSKPEKLADG-RRVRVTVEVFGKGSYKGIGRNYCI 1211
            S    KS ++++ + +    P+     +     D    VRV VE     S +GIG+    
Sbjct: 161  SFVDAKSELQKISQRKFGTLPDYTVLDEKGPEHDKIFVVRVDVETL--VSEQGIGKTKKS 218

Query: 1212 AKCTAAKCALKHLKSAK 1228
            A+  AAK AL+ L + K
Sbjct: 219  AEKDAAKNALRKLGNEK 235


>gi|148265180|ref|YP_001231886.1| ribonuclease III [Geobacter uraniireducens Rf4]
 gi|146398680|gb|ABQ27313.1| RNAse III [Geobacter uraniireducens Rf4]
          Length = 240

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/159 (32%), Positives = 74/159 (46%), Gaps = 35/159 (22%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLN----TLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
             E +INY F D+S L +A+TH S F+N      T   QRLEF GDA++D+L++R L E  
Sbjct: 12   LESAINYHFADRSLLTEALTHRS-FVNESGGKWTKDNQRLEFFGDAVIDFLLSRMLLERF 70

Query: 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLN 1097
                 G LT +R++LV+    ASLA  +G   F K                         
Sbjct: 71   PDSREGALTKIRASLVDEGSLASLAEEIGLGAFLK------------------------- 105

Query: 1098 QEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                L  GE + +        L D +E++  A+YLD G+
Sbjct: 106  ----LGRGE-ERSGGRRKRSLLADAYEALMAAVYLDGGI 139


>gi|237750847|ref|ZP_04581327.1| ribonuclease III [Helicobacter bilis ATCC 43879]
 gi|229373292|gb|EEO23683.1| ribonuclease III [Helicobacter bilis ATCC 43879]
          Length = 228

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 90/192 (46%), Gaps = 44/192 (22%)

Query: 982  FEESINYRFKDKSYLLQAMTHASY---FLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             E+ +NY FK+K  L +A+ H S+   + N      +RLEFLGDA+LD ++  +L+E   
Sbjct: 12   LEQKLNYTFKNKKKLAEALAHKSFKKPYNN------ERLEFLGDAVLDLVVGEYLFETFT 65

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              + G+L+ +R++LVN   F  LA  +    +                            
Sbjct: 66   QKNEGSLSKMRASLVNEASFCKLAQSINLGEYLN-------------------------- 99

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI---ER 1155
               L   E +    ++    L + FE++   IYL+SG  LD+V +V+Y I+ +E    E 
Sbjct: 100  ---LSTSEINNGGRLKAS-ILSNAFEAIMAVIYLESG--LDSVKRVFYPILHNEFRINEE 153

Query: 1156 LSVSVPKSPIRE 1167
            L  S  KS ++E
Sbjct: 154  LLTSDYKSSLQE 165


>gi|229168588|ref|ZP_04296311.1| Ribonuclease 3 [Bacillus cereus AH621]
 gi|228614994|gb|EEK72096.1| Ribonuclease 3 [Bacillus cereus AH621]
          Length = 245

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 61/200 (30%), Positives = 94/200 (47%), Gaps = 38/200 (19%)

Query: 977  DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
            + F  F+E I   F D+  L+QA TH+SY        ++   RLEFLGDA+L+  ++++L
Sbjct: 17   EAFKVFQEEIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76

Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
            ++     S G LT LR+A+V                      P L     RF      N+
Sbjct: 77   FQKYPTMSEGELTKLRAAIV--------------------CEPSL----VRFA-----NE 107

Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
             +      L +GE +     E P  L D+FE+  GA+YLD G  L+ VW    E++  +I
Sbjct: 108  MSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LEIVWGYLKEVVYPKI 164

Query: 1154 ERLSVSVP---KSPIRELLE 1170
               + S     KS ++EL++
Sbjct: 165  NEGAFSHVMDYKSQLQELIQ 184



 Score = 41.2 bits (95), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 20/63 (31%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +L+  YP + EG+L+ LR+  V   +L +   +  FG  ++  
Sbjct: 58  ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANEMSFGSLVLLG 117

Query: 842 KFE 844
           K E
Sbjct: 118 KGE 120


>gi|357236837|ref|ZP_09124180.1| ribonuclease III [Streptococcus criceti HS-6]
 gi|356884819|gb|EHI75019.1| ribonuclease III [Streptococcus criceti HS-6]
          Length = 230

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 111/256 (43%), Gaps = 45/256 (17%)

Query: 981  KFEESINYRFKDKSYLLQAMTHASY-----FLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            K +      FKD S L  A TH SY      LN   +  +RLEFLGDA+L  LI+R+L+ 
Sbjct: 7    KLQADFGIVFKDSSLLETAFTHTSYANEHRLLNISHN--ERLEFLGDAVLQLLISRYLFA 64

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G L+ +RS +V     A  +   GF  F K                       
Sbjct: 65   KFPKKPEGDLSKMRSMIVREESLAGFSKDCGFESFIK----------------------- 101

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
                  L +GE +++   +    LGDLFE+  GA+ LD G+S   V K   ++M  ++E 
Sbjct: 102  ------LGKGE-EKSGGRDRETILGDLFEAFLGALDLDQGIS--AVEKFLNQVMIPKVEA 152

Query: 1156 ---LSVSVPKSPIRELLELEPE---NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNY 1209
                 V   K+ ++E L++      + R       A  ++  V V   G+   +G G++ 
Sbjct: 153  GDYERVKDYKTALQEKLQVNGPVQISYRVINETGPAHNKKFEVVVSADGQDLSQGQGKSK 212

Query: 1210 CIAKCTAAKCALKHLK 1225
             +A+  AAK AL  L+
Sbjct: 213  KLAEQAAAKTALDQLR 228


>gi|62184964|ref|YP_219749.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|424825015|ref|ZP_18250002.1| ribonuclease III [Chlamydophila abortus LLG]
 gi|81312866|sp|Q5L6E3.1|RNC_CHLAB RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|62148031|emb|CAH63783.1| ribonuclease III [Chlamydophila abortus S26/3]
 gi|333410114|gb|EGK69101.1| ribonuclease III [Chlamydophila abortus LLG]
          Length = 237

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 65/232 (28%), Positives = 105/232 (45%), Gaps = 49/232 (21%)

Query: 983  EESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            E  +N+ F     L+ A+TH SY     T+T+  +RLEFLGDA+L  ++T HL+    + 
Sbjct: 11   EAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPSM 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              GTL+  R+AL+N +        LG   +          +I +  ++Q E   T     
Sbjct: 71   DEGTLSTARAALINAVSCCQYTDALGLGEYL---------LIGKGERIQNERGKT----- 116

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                             A  +LFE++ GA+YLD G++      V     K +I  L +  
Sbjct: 117  ----------------SAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGN 160

Query: 1161 PKSPIREL----------LELEPENARFSKPEKLADGRRVRVTV--EVFGKG 1200
            PK+ +++L           + EP    ++ P+  A G  +RV V  EV+G+G
Sbjct: 161  PKNRLQQLTQKHLRTLPVYQYEP----WTSPQG-ASGYHIRVLVNHEVWGEG 207


>gi|294155354|ref|YP_003559738.1| ribonuclease III [Mycoplasma crocodyli MP145]
 gi|291600141|gb|ADE19637.1| ribonuclease III [Mycoplasma crocodyli MP145]
          Length = 223

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 115/239 (48%), Gaps = 50/239 (20%)

Query: 997  LQAMTHASYFLNTLTDC-YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
            LQA+TH+S+F ++     Y+RLEFLGD+++ ++++  L++ +  +  G +T+LR+ +V  
Sbjct: 25   LQAITHSSFFSSSNKKNSYERLEFLGDSVIQFVVSSELFKMDDLNQ-GKMTELRAKVVRA 83

Query: 1056 IIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEV 1115
               AS+++ +G     K    G  E I+   K+Q                 C        
Sbjct: 84   ETLASISIAIGLIDILKTAPGGSQETIKNSTKIQ-----------------C-------- 118

Query: 1116 PKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI---ERLSVSVPKSPIRELLE-L 1171
                 D+FE++ GAIY+D G  LD  +   ++ +K  I    ++    PKS ++E  +  
Sbjct: 119  -----DVFEAIVGAIYVDQG--LDIAYNFVFKFIKQYINGARQVENKDPKSRLQEYFQNF 171

Query: 1172 EPENARFSK---PEKLADGRRVRVTVEVFGKGSYKGIGRNYCI--AKCTAAKCALKHLK 1225
              EN +++    P K+   R +        +GS  G+G+ Y    A+  AA  ALK LK
Sbjct: 172  SKENIKYNVNQLPNKIFQARAIH-------EGSVYGMGQGYSKKEAEIEAAIDALKKLK 223


>gi|221135073|ref|ZP_03561376.1| ribonuclease III [Glaciecola sp. HTCC2999]
          Length = 241

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/162 (32%), Positives = 78/162 (48%), Gaps = 34/162 (20%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
            +D F K +  I+Y+F D S L QA+TH S          +RLEFLGDA+L  ++  HL++
Sbjct: 18   IDPFVKLQRLIDYQFNDVSLLKQALTHKSAH----RQHNERLEFLGDAVLGMIVGEHLFK 73

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G LT +RSA+V     A +A           L  GL E    F+++ A    +
Sbjct: 74   AFPNSPEGKLTRMRSAIVKGDTLAEIA-----------LEKGLGE----FIQLGAGELKS 118

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137
              ++ Y +               L D+ ES+ GAIYLD+GM+
Sbjct: 119  GGKQRYSI---------------LADVVESIIGAIYLDAGMN 145


>gi|335040133|ref|ZP_08533269.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
 gi|334179958|gb|EGL82587.1| Ribonuclease 3 [Caldalkalibacillus thermarum TA2.A1]
          Length = 234

 Score = 72.4 bits (176), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 52/162 (32%), Positives = 77/162 (47%), Gaps = 35/162 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY----QRLEFLGDAILDYLITRHLY 1034
            F  F+  I   FKD++ L+QA TH+SY +N   D      +RLEFLGDA+L+  ++++LY
Sbjct: 7    FKAFQNRIGVSFKDETLLIQAFTHSSY-VNEHKDKALKDNERLEFLGDAVLELTVSQYLY 65

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            +  +  S G +T LR+A+V        A  L F    +                      
Sbjct: 66   KHFQTMSEGEMTKLRAAIVCEPSLVKFAHELEFGKLIR---------------------- 103

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
                   L +GE + A   E P  L D+FE+  GA+YLD G+
Sbjct: 104  -------LGKGE-EIAGGRERPALLADVFEAFIGALYLDQGL 137


>gi|398814573|ref|ZP_10573254.1| ribonuclease III [Brevibacillus sp. BC25]
 gi|398036842|gb|EJL30051.1| ribonuclease III [Brevibacillus sp. BC25]
          Length = 233

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 64/201 (31%), Positives = 95/201 (47%), Gaps = 44/201 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNT----LTDCYQRLEFLGDAILDYLITRHLY 1034
            F + +E I +RF+D+S L QA TH+SY        ++D  +RLEFLGDA+L+  +++ LY
Sbjct: 8    FAQLQEMIGFRFRDESVLRQAFTHSSYVNEQRGKRISD-NERLEFLGDAVLELTVSQFLY 66

Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
            +     S G +T LR+A+V        A  L F                         D 
Sbjct: 67   KTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNF------------------------GDL 102

Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK-----VYYEIM 1149
             L     L +GE +     + P  L D+FE+  GA+YLD G  LD V+      VY  I 
Sbjct: 103  VL-----LGKGE-ELTGGRQRPALLADVFEAFVGALYLDQG--LDAVFSFMEKYVYPRID 154

Query: 1150 KSEIERLSVSVPKSPIRELLE 1170
            K E  +  V+  KS ++E ++
Sbjct: 155  KGEFAQ--VTDFKSQLQEFVQ 173



 Score = 45.1 bits (105), Expect = 0.24,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 39/63 (61%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ FLY T+P + EG+++ LR+  V   +L K  +   FG+ ++  
Sbjct: 47  ERLEFLGDAVLELTVSQFLYKTFPKMSEGEMTKLRAAIVCEPSLVKFAELLNFGDLVLLG 106

Query: 842 KFE 844
           K E
Sbjct: 107 KGE 109


>gi|333979683|ref|YP_004517628.1| ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
 gi|333823164|gb|AEG15827.1| Ribonuclease 3 [Desulfotomaculum kuznetsovii DSM 6115]
          Length = 243

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 54/200 (27%), Positives = 95/200 (47%), Gaps = 43/200 (21%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTL---TDCYQRLEFLGDAILDYLITRHLYEDER 1038
             +E + +R++++  L  A+TH+SY    +    +  QRLEFLGDA+L+ +++ +LY    
Sbjct: 11   LKEKLGFRWQNEDLLCLALTHSSYAYEKIFRGQENNQRLEFLGDAVLELVVSDYLYRTYP 70

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
             H+ G LT LR+A+V                      P L          +   +  L  
Sbjct: 71   GHTEGELTRLRAAIV--------------------CEPSL---------ARTARELDLGS 101

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM------SLDTVWKVYYEIMKSE 1152
              Y+  GE + +   E P  L D FE++ GA+YLD G+      +L  +  V  ++++  
Sbjct: 102  CLYMGRGE-ERSGGRERPSILADAFEALLGAVYLDQGLEMARKVALQYLKPVIDDVLEGR 160

Query: 1153 IERLSVSVPKSPIRELLELE 1172
            +ER      K+ ++E+L+ E
Sbjct: 161  VERDY----KTELQEILQEE 176



 Score = 42.4 bits (98), Expect = 1.7,   Method: Composition-based stats.
 Identities = 21/65 (32%), Positives = 37/65 (56%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ +LY TYP   EG+L+ LR+  V   +L +  ++   G  +   
Sbjct: 47  QRLEFLGDAVLELVVSDYLYRTYPGHTEGELTRLRAAIVCEPSLARTARELDLGSCLYMG 106

Query: 842 KFEPR 846
           + E R
Sbjct: 107 RGEER 111


>gi|229918600|ref|YP_002887246.1| ribonuclease III [Exiguobacterium sp. AT1b]
 gi|229470029|gb|ACQ71801.1| ribonuclease III [Exiguobacterium sp. AT1b]
          Length = 259

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 56/164 (34%), Positives = 79/164 (48%), Gaps = 32/164 (19%)

Query: 975  LLDGFDKFEESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRH 1032
            +L+ F   EE ++ +F +   L+QA TH+SY      L    +RLEFLGDA+L+  ++R 
Sbjct: 27   ILELFKSLEERLDVQFSNHDLLMQAFTHSSYVNEQRGLRKDNERLEFLGDAVLELTVSRF 86

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            LYE     S G LT LR+A+V                      P L    + F    A +
Sbjct: 87   LYETYPERSEGELTKLRAAIV--------------------CEPSLVNFAEAF----AFS 122

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136
            DF L     L +GE +     + P  L D+FES  GA+YLD G+
Sbjct: 123  DFIL-----LGKGE-ELTGGRKRPALLADVFESYIGALYLDQGI 160



 Score = 42.4 bits (98), Expect = 1.6,   Method: Composition-based stats.
 Identities = 22/63 (34%), Positives = 36/63 (57%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  ++ FLY TYP   EG+L+ LR+  V   +L    +   F + ++  
Sbjct: 69  ERLEFLGDAVLELTVSRFLYETYPERSEGELTKLRAAIVCEPSLVNFAEAFAFSDFILLG 128

Query: 842 KFE 844
           K E
Sbjct: 129 KGE 131


>gi|407459149|ref|YP_006737252.1| ribonuclease III [Chlamydia psittaci M56]
 gi|405785977|gb|AFS24722.1| ribonuclease III [Chlamydia psittaci M56]
          Length = 237

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 64/228 (28%), Positives = 105/228 (46%), Gaps = 41/228 (17%)

Query: 983  EESINYRFKDKSYLLQAMTHASYF--LNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
            E  +N+ F     L+ A+TH SY     T+T+  +RLEFLGDA+L  ++T HL+    + 
Sbjct: 11   EAKLNFTFTQPKLLVTALTHPSYRNETATITEDSERLEFLGDAVLCLIVTEHLFLLFPSM 70

Query: 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEY 1100
              GTL+  R+AL+N +        LG   +          +I +  ++Q E   T     
Sbjct: 71   DEGTLSTARAALINAVSCCQYTDALGLGEYL---------LIGKGERIQNERGRT----- 116

Query: 1101 YLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSV 1160
                             A  +LFE++ GA+YLD G++      V     K +I  L +  
Sbjct: 117  ----------------SAYANLFEAILGAVYLDGGLAPARQITVPLLPSKKDILPLMLGN 160

Query: 1161 PKSPIREL----LELEP--ENARFSKPEKLADGRRVRVTV--EVFGKG 1200
            PK+ +++L    L   P  +   ++ P+  A G  +RV V  +V+G+G
Sbjct: 161  PKNRLQQLTQKHLRTLPVYQCESWTSPQG-ASGYHIRVIVNNQVWGEG 207


>gi|134301463|ref|YP_001121431.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418]
 gi|189043317|sp|A4IWK9.1|RNC_FRATW RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|134049240|gb|ABO46311.1| ribonuclease III [Francisella tularensis subsp. tularensis WY96-3418]
          Length = 230

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 60/196 (30%), Positives = 92/196 (46%), Gaps = 43/196 (21%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
            + +F   + Y FKD + L++A+TH S         Y+RLEFLGD++L ++I   LY+   
Sbjct: 5    YSRFYNILGYNFKDCTLLIRALTHRS----KTKKNYERLEFLGDSVLSFVIAEVLYKQFT 60

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
              + G L+ LRS LV     A LA                                +L  
Sbjct: 61   DLAEGKLSQLRSKLVKGTTLAQLAS-------------------------------SLKM 89

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV----YYEIMKS-EI 1153
            + Y++ G  ++    +  K L D+FE+V GAIYLDS  +  TV KV    Y  I+ S  +
Sbjct: 90   DEYIILGASEQGGH-KREKILEDVFEAVIGAIYLDSDFA--TVKKVILKWYQPIISSINL 146

Query: 1154 ERLSVSVPKSPIRELL 1169
            + + V   KS ++E+L
Sbjct: 147  DTIKVKDSKSKLQEIL 162



 Score = 43.9 bits (102), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 23/55 (41%), Positives = 32/55 (58%)

Query: 775 NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
           + T  + +RLE +GDS L + I   LY  + ++ EGKLS LRSK V    L +L 
Sbjct: 30  SKTKKNYERLEFLGDSVLSFVIAEVLYKQFTDLAEGKLSQLRSKLVKGTTLAQLA 84


>gi|126654291|ref|ZP_01726068.1| ribonuclease III [Bacillus sp. B14905]
 gi|126589255|gb|EAZ83416.1| ribonuclease III [Bacillus sp. B14905]
          Length = 254

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 47/274 (17%)

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF----LNTLTDCYQRLEF 1019
            T  +S  L + + + F+  +  +N  F +K+ L QA TH+SY         TD  +RLEF
Sbjct: 8    TMQKSGVLPEKVRNQFELLQHELNITFVNKNLLYQAFTHSSYVNEHRRKLFTD-NERLEF 66

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGDA+L+  ++++L+E     S G LT LR+++V        A  LGF            
Sbjct: 67   LGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGF------------ 114

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
                RFV +    + T  +E                P  L D+FES  GA+YLD    L 
Sbjct: 115  ---GRFVLLGKGEELTGGRER---------------PALLADVFESFVGALYLDQ--DLQ 154

Query: 1140 TVWKVYYEIMKSEIERLSVSVP---KSPIRELLELEPENARFSKP---EKLADGRRVRVT 1193
            TV      I+  ++E  + S     KS ++E+++ +  N         EK     R  V+
Sbjct: 155  TVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQ-QTNNGLLHYEIIDEKGPAHNRTFVS 213

Query: 1194 VEVFGKGSYKGIGRNYCI--AKCTAAKCALKHLK 1225
              V   G   GIGR      A+  AA+CA++ ++
Sbjct: 214  -SVLLNGQELGIGRGKSKKEAEQQAAQCAMRMMR 246



 Score = 42.7 bits (99), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+ +++ +L+  YPN+ EG+L+ LR+  V   +L     +  FG  ++  
Sbjct: 62  ERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLG 121

Query: 842 KFE 844
           K E
Sbjct: 122 KGE 124


>gi|383762960|ref|YP_005441942.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
 gi|381383228|dbj|BAM00045.1| ribonuclease III [Caldilinea aerophila DSM 14535 = NBRC 104270]
          Length = 254

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 74/256 (28%), Positives = 107/256 (41%), Gaps = 46/256 (17%)

Query: 982  FEESINYRFKDKSYLLQAMTHASYFLNTLTDCY------QRLEFLGDAILDYLITRHLYE 1035
             E+++   F +K  L QA  H SY LN L+         +RLEFLGDA+L Y+ +  LY 
Sbjct: 9    LEQALGITFHNKQLLQQAFVHRSY-LNELSGDKGQLLDNERLEFLGDAVLSYIFSEFLYL 67

Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
                   G LT+LRSALV     A LA +L       HL                     
Sbjct: 68   RHPDAREGRLTNLRSALVRRETLAHLARQL-------HLG-------------------- 100

Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
               +Y L+    +E+     P  L   FE++ GA+YLD G  +D   +V   +  +E+E+
Sbjct: 101  ---DYLLLGHGEEESGGRHRPATLCATFEALIGAVYLDQG--VDVCREVVVRLFAAELEK 155

Query: 1156 L-SVSVPKSPIRELLELEPENARFSKPEKLADG------RRVRVTVEVFGKGSYKGIGRN 1208
            L  +   + P   L E   E    +   K  D       +   + V++ G+    G GR+
Sbjct: 156  LEQIQESRDPKSRLQEFAQETFGHTPRYKEIDSGGPDHDKYFVMVVQINGRPYGIGEGRS 215

Query: 1209 YCIAKCTAAKCALKHL 1224
               A   AA  AL  L
Sbjct: 216  KQEASQQAAAMALYRL 231



 Score = 47.4 bits (111), Expect = 0.049,   Method: Composition-based stats.
 Identities = 22/58 (37%), Positives = 35/58 (60%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
           +RLE +GD+ L Y  + FLY  +P+  EG+L++LRS  V    L  L +Q   G+ ++
Sbjct: 47  ERLEFLGDAVLSYIFSEFLYLRHPDAREGRLTNLRSALVRRETLAHLARQLHLGDYLL 104


>gi|238926905|ref|ZP_04658665.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
 gi|238885139|gb|EEQ48777.1| ribonuclease III [Selenomonas flueggei ATCC 43531]
          Length = 238

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 73/256 (28%), Positives = 113/256 (44%), Gaps = 53/256 (20%)

Query: 968  SKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY--QRLEFLGDAIL 1025
            S H+++       +    ++  F D S L +A+TH SY           +RLEFLGDA+L
Sbjct: 2    SHHMTETRRAELVRLSAFLDVDFADLSLLEEALTHPSYVNEARERATHNERLEFLGDAVL 61

Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
            +  I+ +LY      S G LT +R++LV +   A LA RL   H   HL  G  E     
Sbjct: 62   ELAISTYLYVAYPHCSEGELTKMRASLVQSETLARLARRL---HLGAHLRMGRGE----- 113

Query: 1086 VKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVY 1145
                            ++ G  +   ++E      ++FE+V GA+YLD G   D  +   
Sbjct: 114  ----------------MLGGGAERQNNLE------NVFEAVIGAVYLDRGW--DAAYSYV 149

Query: 1146 YEIMKSEIERL----SVSVPKSPIRELLE------LEPENARFSKPEKLADGR---RVRV 1192
                  E+ RL    +V   K+ ++E ++      +  E    S P+   D R   RVR+
Sbjct: 150  QRQFTEEVTRLRQEHAVQDYKTMLQEYVQGHRHECIAYEQVAESGPDH--DKRFTMRVRI 207

Query: 1193 TVEVFGKGSYKGIGRN 1208
             +EV G    +GIGR+
Sbjct: 208  GMEVLG----EGIGRS 219



 Score = 46.2 bits (108), Expect = 0.11,   Method: Composition-based stats.
 Identities = 20/57 (35%), Positives = 36/57 (63%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838
           +RLE +GD+ L+ AI+ +LY  YP+  EG+L+ +R+  V +  L +L ++   G  +
Sbjct: 51  ERLEFLGDAVLELAISTYLYVAYPHCSEGELTKMRASLVQSETLARLARRLHLGAHL 107


>gi|154686009|ref|YP_001421170.1| ribonuclease III [Bacillus amyloliquefaciens FZB42]
 gi|429505144|ref|YP_007186328.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
 gi|189043290|sp|A7Z4L3.1|RNC_BACA2 RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|154351860|gb|ABS73939.1| Rnc [Bacillus amyloliquefaciens FZB42]
 gi|429486734|gb|AFZ90658.1| ribonuclease III [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
          Length = 249

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 57/174 (32%), Positives = 82/174 (47%), Gaps = 34/174 (19%)

Query: 976  LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRH 1032
            ++ F +F+E I+  F+++  L QA TH+SY        Y+   RLEFLGDA+L+  I++ 
Sbjct: 17   IEQFKEFQERISVHFQNEKLLYQAFTHSSYVNEHRKKPYEDNERLEFLGDAVLELTISQF 76

Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
            L+    A S G LT LR+A+V      SLA  L F                         
Sbjct: 77   LFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSF------------------------G 112

Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-LDTVWKVY 1145
            D  L     L +GE +     + P  L D+FE+  GA+YLD G+  +    KVY
Sbjct: 113  DLVL-----LGKGE-EMTGGRKRPALLADVFEAFIGALYLDQGLDPVQQFLKVY 160



 Score = 45.1 bits (105), Expect = 0.29,   Method: Composition-based stats.
 Identities = 23/63 (36%), Positives = 37/63 (58%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+  I+ FL+  YP + EG L+ LR+  V   +L  L  +  FG+ ++  
Sbjct: 59  ERLEFLGDAVLELTISQFLFAKYPAMSEGDLTKLRAAIVCEPSLVSLAHELSFGDLVLLG 118

Query: 842 KFE 844
           K E
Sbjct: 119 KGE 121


>gi|119190771|ref|XP_001245992.1| hypothetical protein CIMG_05433 [Coccidioides immitis RS]
          Length = 1435

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 147/400 (36%), Gaps = 107/400 (26%)

Query: 782  KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
            +RLE +GDS LK   +I L   +P   EG+L+  +   VSN                   
Sbjct: 991  QRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNIVSN------------------- 1031

Query: 842  KFEPRDNWLPPGYFVPKYLETAL----IEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
                       GY     L+T L    +   F  + W     P+                
Sbjct: 1032 -----------GYLANAALQTGLDKFILTKPFTGAKWR----PSYN-------------- 1062

Query: 898  CVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL----LFM- 952
              D   T DM   +           +  K +AD VEALIGA  I+ G    L    +F+ 
Sbjct: 1063 -TDHINTGDMTEPT---------REMSTKVLADVVEALIGAANIDGGENKILNCLKIFIP 1112

Query: 953  --SWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTL 1010
               W  L     + + +    SD   +   + E  + Y FK K  LL A+TH S      
Sbjct: 1113 DIKWSPLNECVNILHHQEDSFSDENNNMLSEIEGLVGYTFKKKPLLLAAVTHPSS--KGS 1170

Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAV------- 1063
               YQRLEF+GD+ILD ++ + L+E  R      +  +R+ALVN    A L +       
Sbjct: 1171 GHSYQRLEFVGDSILDIIVVQELFESPRCFHHFDMHLMRTALVNADFLAFLCMNAYREED 1230

Query: 1064 -------------------RLGFHHFFKHLSP-----GLHEVIQRFVKMQAENDFTL-NQ 1098
                               R     F KH +            +++ K+  E D  L + 
Sbjct: 1231 RGEAVENSKRRVTVAMTKRRAYLWGFMKHSASWDIVNAQQRAAKQYEKLHEEIDEKLRSS 1290

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
            + Y     C     ++  K   D+ ES+ GAI++DS  S+
Sbjct: 1291 KTYPWTLLC----RLDAAKFFSDIVESILGAIFIDSQGSM 1326



 Score = 42.0 bits (97), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 32/122 (26%), Positives = 53/122 (43%), Gaps = 12/122 (9%)

Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
            YQRLEFLGD++L    +  L  D      G LT  +  +V+N   A+ A++ G   F   
Sbjct: 990  YQRLEFLGDSLLKLHTSIQLAADHPLWPEGRLTMRKGNIVSNGYLANAALQTGLDKFI-- 1047

Query: 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133
                   + + F   +    +  +   ++  G+  E       K L D+ E++ GA  +D
Sbjct: 1048 -------LTKPFTGAKWRPSYNTD---HINTGDMTEPTREMSTKVLADVVEALIGAANID 1097

Query: 1134 SG 1135
             G
Sbjct: 1098 GG 1099


>gi|15606266|ref|NP_213645.1| RNase III [Aquifex aeolicus VF5]
 gi|7531189|sp|O67082.1|RNC_AQUAE RecName: Full=Ribonuclease 3; AltName: Full=Ribonuclease III;
            Short=RNase III
 gi|83753752|pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double-Stranded Rna At 2.5-Angstrom
            Resolution
 gi|83753753|pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double-Stranded Rna At 2.5-Angstrom
            Resolution
 gi|83753764|pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double Stranded Rna At 2.8-Angstrom
            Resolution
 gi|83753765|pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double Stranded Rna At 2.8-Angstrom
            Resolution
 gi|83753766|pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double Stranded Rna At 2.8-Angstrom
            Resolution
 gi|83753767|pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Double Stranded Rna At 2.8-Angstrom
            Resolution
 gi|160877674|pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877675|pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 2.9-Angstrom Resolution
 gi|160877678|pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877679|pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 2.5-Angstrom Resolution
 gi|160877684|pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|160877685|pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
            Complexed With Ds-Rna At 1.7-Angstrom Resolution
 gi|2983469|gb|AAC07049.1| RNase III [Aquifex aeolicus VF5]
          Length = 221

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 39/175 (22%)

Query: 979  FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
             ++ E+ + Y FKDKS L +A+TH SY   +  + Y+ LEFLGDA++++ I   L +   
Sbjct: 4    LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSP 60

Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
                G L+ L++ L++   F  LA +L  H F +         I+R              
Sbjct: 61   NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97

Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
                  G+ +E         +GD+FE++  A+Y+DSG   +   +++Y++ K +I
Sbjct: 98   ------GKINET-------IIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139


>gi|169827094|ref|YP_001697252.1| ribonuclease 3 [Lysinibacillus sphaericus C3-41]
 gi|168991582|gb|ACA39122.1| Ribonuclease 3 [Lysinibacillus sphaericus C3-41]
          Length = 254

 Score = 72.0 bits (175), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 79/274 (28%), Positives = 122/274 (44%), Gaps = 47/274 (17%)

Query: 964  TNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYF----LNTLTDCYQRLEF 1019
            T  +S  L + + + F+  +  +N  F +K+ L QA TH+SY         TD  +RLEF
Sbjct: 8    TMQKSGVLPEKVRNQFELLQHELNITFINKNLLYQAFTHSSYVNEHRRKLFTD-NERLEF 66

Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLH 1079
            LGDA+L+  ++++L+E     S G LT LR+++V        A  LGF            
Sbjct: 67   LGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGF------------ 114

Query: 1080 EVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139
                RFV +    + T  +E                P  L D+FES  GA+YLD    L 
Sbjct: 115  ---GRFVLLGKGEELTGGRER---------------PALLADVFESFVGALYLDQ--DLQ 154

Query: 1140 TVWKVYYEIMKSEIERLSVSVP---KSPIRELLELEPENARFSKP---EKLADGRRVRVT 1193
            TV      I+  ++E  + S     KS ++E+++ +  N         EK     R  V+
Sbjct: 155  TVVSFLERIVFPKVEVGAFSHVMDFKSQLQEMVQ-QTNNGLLHYEIIDEKGPAHNRTFVS 213

Query: 1194 VEVFGKGSYKGIGRNYCI--AKCTAAKCALKHLK 1225
              V   G   GIGR      A+  AA+CA++ ++
Sbjct: 214  -SVLLNGQELGIGRGKSKKEAEQQAAQCAMRMMR 246



 Score = 42.7 bits (99), Expect = 1.5,   Method: Composition-based stats.
 Identities = 21/63 (33%), Positives = 38/63 (60%)

Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
           +RLE +GD+ L+ +++ +L+  YPN+ EG+L+ LR+  V   +L     +  FG  ++  
Sbjct: 62  ERLEFLGDAVLELSVSKYLFEKYPNMSEGELTKLRASIVCEPSLVIFANELGFGRFVLLG 121

Query: 842 KFE 844
           K E
Sbjct: 122 KGE 124


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.318    0.135    0.402 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,823,041,406
Number of Sequences: 23463169
Number of extensions: 870933498
Number of successful extensions: 2709510
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 2952
Number of HSP's successfully gapped in prelim test: 2449
Number of HSP's that attempted gapping in prelim test: 2675768
Number of HSP's gapped (non-prelim): 24251
length of query: 1233
length of database: 8,064,228,071
effective HSP length: 155
effective length of query: 1078
effective length of database: 8,722,404,172
effective search space: 9402751697416
effective search space used: 9402751697416
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 83 (36.6 bits)