BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15484
(1233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3C4T|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 318 bits (814), Expect = 2e-86, Method: Compositional matrix adjust.
Identities = 162/264 (61%), Positives = 205/264 (77%), Gaps = 3/264 (1%)
Query: 965 NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAI 1024
P+++ + L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TD YQRLEFLGDAI
Sbjct: 1 GPDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAI 60
Query: 1025 LDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQR 1084
LDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L VI
Sbjct: 61 LDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDD 120
Query: 1085 FVKMQAEND--FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVW 1142
FVK Q E + ++ E E + ++ EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW
Sbjct: 121 FVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVW 180
Query: 1143 KVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY 1202
+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG +VRVTVEV GKG +
Sbjct: 181 QVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDG-KVRVTVEVVGKGKF 239
Query: 1203 KGIGRNYCIAKCTAAKCALKHLKS 1226
KG+GR+Y IAK AA+ AL+ LK+
Sbjct: 240 KGVGRSYRIAKSAAARRALRSLKA 263
Score = 31.2 bits (69), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 51 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRSALVNN 91
>pdb|3C4B|A Chain A, Structure Of Rnaseiiib And Dsrna Binding Domains Of Mouse
Dicer
Length = 265
Score = 301 bits (771), Expect = 1e-81, Method: Composition-based stats.
Identities = 159/263 (60%), Positives = 197/263 (74%), Gaps = 3/263 (1%)
Query: 966 PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
P+++ + L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TD YQRLEFLGDAIL
Sbjct: 2 PDAEKTLNHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDXYQRLEFLGDAIL 61
Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
DYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L VI F
Sbjct: 62 DYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDF 121
Query: 1086 VKMQAENDFTLNQEYYLMEG--ECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
VK Q E + + L + ++ EDIEVPKA GD+FES+AGAIY DSG SL+ VW+
Sbjct: 122 VKFQLEKNEXQGXDSELRRSEEDEEKEEDIEVPKAXGDIFESLAGAIYXDSGXSLEVVWQ 181
Query: 1144 VYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYK 1203
VYY + IE+ S +VP+SP+RELLE EPE A+FS E+ DG +VRVTVEV GKG +K
Sbjct: 182 VYYPXXQPLIEKFSANVPRSPVRELLEXEPETAKFSPAERTYDG-KVRVTVEVVGKGKFK 240
Query: 1204 GIGRNYCIAKCTAAKCALKHLKS 1226
G+GR+Y IAK AA+ AL+ LK+
Sbjct: 241 GVGRSYRIAKSAAARRALRSLKA 263
Score = 30.4 bits (67), Expect = 5.8, Method: Composition-based stats.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 51 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 91
>pdb|2EB1|A Chain A, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|B Chain B, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
pdb|2EB1|C Chain C, Crystal Structure Of The C-Terminal Rnase Iii Domain Of
Human Dicer
Length = 200
Score = 241 bits (614), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 124/196 (63%), Positives = 150/196 (76%), Gaps = 12/196 (6%)
Query: 975 LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TDCYQRLEFLGDAILDYLIT+HLY
Sbjct: 4 LISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLY 63
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
ED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L VI FV+ Q E +
Sbjct: 64 EDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKN- 122
Query: 1095 TLNQEYYLMEGECDEA-------EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYE 1147
E M+ E + EDIEVPKA+GD+FES+AGAIY+DSGMSL+TVW+VYY
Sbjct: 123 ----EMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYP 178
Query: 1148 IMKSEIERLSVSVPKS 1163
+M+ IE+ S +VP+S
Sbjct: 179 MMRPLIEKFSANVPRS 194
Score = 30.8 bits (68), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 20/42 (47%), Positives = 25/42 (59%), Gaps = 2/42 (4%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 44 QRLEFLGDAILDYLITKHLYED-PRQHSPGVLTDLRSALVNN 84
>pdb|3O2R|B Chain B, Structural Flexibility In Region Involved In Dimer Formation
Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
Campylobacter Jejuni
pdb|3O2R|D Chain D, Structural Flexibility In Region Involved In Dimer Formation
Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
Campylobacter Jejuni
Length = 144
Score = 75.5 bits (184), Expect = 2e-13, Method: Composition-based stats.
Identities = 49/159 (30%), Positives = 76/159 (47%), Gaps = 32/159 (20%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
+K E+S+ Y FKDK+ L+ A+TH S+ + + +RLEFLGDA+LD ++ +L+
Sbjct: 3 EKLEQSLTYEFKDKNLLIHALTHKSFXKKSYNN--ERLEFLGDAVLDLVVGEYLFHKFAK 60
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
+ G L+ LR+ALVN FA +A L F + + EN+
Sbjct: 61 DAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LMSVAEENN------ 101
Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
E P L D E++ GAI+L++G
Sbjct: 102 -----------GGKEKPSILSDALEAIIGAIHLEAGFEF 129
Score = 32.3 bits (72), Expect = 1.9, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GD+ L + +L+ + EG LS LR+ V+ + K+ G+ ++ +
Sbjct: 36 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMS 95
Query: 842 KFEPRDNWLPPGYFVPKYLETAL--------IEAGF 869
E + G P L AL +EAGF
Sbjct: 96 VAEENNG----GKEKPSILSDALEAIIGAIHLEAGF 127
>pdb|3N3W|A Chain A, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain
Ribonuclase Iii (Rnc) From Campylobacter Jejuni
pdb|3N3W|B Chain B, 2.2 Angstrom Resolution Crystal Structure Of Nuclease Domain
Ribonuclase Iii (Rnc) From Campylobacter Jejuni
Length = 248
Score = 74.3 bits (181), Expect = 4e-13, Method: Composition-based stats.
Identities = 52/172 (30%), Positives = 82/172 (47%), Gaps = 33/172 (19%)
Query: 967 ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
E+ + + +K E+S+ Y FKDK+ L+ A+TH S F + + +RLEFLGDA+LD
Sbjct: 16 ENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLD 72
Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
++ +L+ + G L+ LR+ALVN FA +A L F +
Sbjct: 73 LVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LM 119
Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
+ EN+ G+ E P L D E++ GAI+L++G
Sbjct: 120 SVAEENN----------GGK-------EKPSILSDALEAIIGAIHLEAGFEF 154
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GD+ L + +L+ + EG LS LR+ V+ + K+ G+ ++ +
Sbjct: 61 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMS 120
Query: 842 KFEPRDNWLPPGYFVPKYLETAL--------IEAGF 869
E + G P L AL +EAGF
Sbjct: 121 VAEENNG----GKEKPSILSDALEAIIGAIHLEAGF 152
>pdb|3O2R|A Chain A, Structural Flexibility In Region Involved In Dimer Formation
Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
Campylobacter Jejuni
pdb|3O2R|C Chain C, Structural Flexibility In Region Involved In Dimer Formation
Of Nuclease Domain Of Ribonuclase Iii (Rnc) From
Campylobacter Jejuni
Length = 170
Score = 73.6 bits (179), Expect = 6e-13, Method: Composition-based stats.
Identities = 51/172 (29%), Positives = 80/172 (46%), Gaps = 33/172 (19%)
Query: 967 ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
E+ + + +K E+S+ Y FKDK+ L+ A+TH S F + + +RLEFLGDA+LD
Sbjct: 16 ENLYFQSNAMKNIEKLEQSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLD 72
Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFV 1086
++ +L+ + G L+ LR+ALVN FA +A L F +
Sbjct: 73 LVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFI-------------LM 119
Query: 1087 KMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138
+ EN+ E P L D E++ GAI+L++G
Sbjct: 120 SVAEENN-----------------GGKEKPSILSDALEAIIGAIHLEAGFEF 154
Score = 32.3 bits (72), Expect = 1.7, Method: Composition-based stats.
Identities = 26/96 (27%), Positives = 43/96 (44%), Gaps = 12/96 (12%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GD+ L + +L+ + EG LS LR+ V+ + K+ G+ ++ +
Sbjct: 61 ERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMS 120
Query: 842 KFEPRDNWLPPGYFVPKYLETAL--------IEAGF 869
E + G P L AL +EAGF
Sbjct: 121 VAEENNG----GKEKPSILSDALEAIIGAIHLEAGF 152
>pdb|1YYK|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYK|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double-Stranded Rna At 2.5-Angstrom
Resolution
pdb|1YYW|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|C Chain C, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|1YYW|D Chain D, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Double Stranded Rna At 2.8-Angstrom
Resolution
pdb|2NUE|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUE|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.9-Angstrom Resolution
pdb|2NUF|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUF|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 2.5-Angstrom Resolution
pdb|2NUG|A Chain A, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
pdb|2NUG|B Chain B, Crystal Structure Of Rnase Iii From Aquifex Aeolicus
Complexed With Ds-Rna At 1.7-Angstrom Resolution
Length = 221
Score = 71.6 bits (174), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/175 (28%), Positives = 86/175 (49%), Gaps = 39/175 (22%)
Query: 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97
Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 ------GKINET-------IIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|1YZ9|A Chain A, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
pdb|1YZ9|B Chain B, Crystal Structure Of Rnase Iii Mutant E110q From Aquifex
Aeolicus Complexed With Double Stranded Rna At 2.1-
Angstrom Resolution
Length = 221
Score = 70.5 bits (171), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 39/175 (22%)
Query: 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97
Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+F+++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 ------GKINET-------IIGDVFQALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|2EZ6|A Chain A, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
pdb|2EZ6|B Chain B, Crystal Structure Of Aquifex Aeolicus Rnase Iii (d44n)
Complexed With Product Of Double-stranded Rna Processing
Length = 221
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 39/175 (22%)
Query: 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLG+A++++ I L +
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGNALVNFFIVDLLVQYSP 60
Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97
Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 ------GKINET-------IIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|1YYO|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
pdb|1YYO|B Chain B, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Double-stranded Rna At 2.9-
Angstrom Resolution
Length = 221
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 39/175 (22%)
Query: 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97
Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+F+++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 ------GKINET-------IIGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|1RC7|A Chain A, Crystal Structure Of Rnase Iii Mutant E110k From Aquifex
Aeolicus Complexed With Ds-Rna At 2.15 Angstrom
Resolution
Length = 220
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 86/175 (49%), Gaps = 39/175 (22%)
Query: 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 4 LEQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSP 60
Query: 1039 AHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQ 1098
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 61 NKREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR-------------- 97
Query: 1099 EYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+F+++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 ------GKINET-------IIGDVFKALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|1I4S|A Chain A, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
pdb|1I4S|B Chain B, Crystal Structure Of Rnase Iii Endonuclease Domain From
Aquifex Aeolicus At 2.15 Angstrom Resolution
Length = 147
Score = 69.7 bits (169), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 39/174 (22%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 5 EQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSPN 61
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 62 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR--------------- 97
Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 98 -----GKINET-------IIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 139
>pdb|1JFZ|A Chain A, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|B Chain B, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|C Chain C, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1JFZ|D Chain D, Crystal Structure Of Mn(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.10
Angstrom Resolution
pdb|1RC5|A Chain A, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|B Chain B, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|C Chain C, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
pdb|1RC5|D Chain D, Crystal Structure Of Mg(Ii)-Complex Of Rnase Iii
Endonuclease Domain From Aquifex Aeolicus At 2.30
Angstrom Resolution
Length = 154
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 49/174 (28%), Positives = 86/174 (49%), Gaps = 39/174 (22%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 6 EQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSPN 62
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
G L+ L++ L++ F LA +L H F + I+R
Sbjct: 63 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIR---------IKR--------------- 98
Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
G+ +E +GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 99 -----GKINET-------IIGDVFEALWAAVYIDSGRDANFTRELFYKLFKEDI 140
>pdb|2A11|A Chain A, Crystal Structure Of Nuclease Domain Of Ribonuclase Iii From
Mycobacterium Tuberculosis
Length = 242
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 45/139 (32%), Positives = 60/139 (43%), Gaps = 28/139 (20%)
Query: 999 AMTHASY-FLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057
A+TH SY + N +RLEFLGDA+L IT L+ S G L LR+++VN
Sbjct: 26 ALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQA 85
Query: 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117
A +A RL G+H ++ R GE + +
Sbjct: 86 LADVARRLCAEGL------GVHVLLGR--------------------GEANTG-GADKSS 118
Query: 1118 ALGDLFESVAGAIYLDSGM 1136
L D ES+ GAIYL GM
Sbjct: 119 ILADGMESLLGAIYLQHGM 137
Score = 37.7 bits (86), Expect = 0.045, Method: Composition-based stats.
Identities = 20/58 (34%), Positives = 33/58 (56%)
Query: 774 ENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
EN P+ +RLE +GD+ L IT L+ +P+ EG L+ LR+ V+ L + ++
Sbjct: 35 ENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARR 92
>pdb|1O0W|A Chain A, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
pdb|1O0W|B Chain B, Crystal Structure Of Ribonuclease Iii (Tm1102) From
Thermotoga Maritima At 2.0 A Resolution
Length = 252
Score = 52.4 bits (124), Expect = 2e-06, Method: Composition-based stats.
Identities = 63/260 (24%), Positives = 109/260 (41%), Gaps = 49/260 (18%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTL------TDCYQRLEFLGDAILDYLITRHL 1033
++F++ FK++ L +A+ H+SY + ++LEFLGDA+L+ + L
Sbjct: 22 EEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEIL 81
Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
Y+ G L ++SA + + A ++ ++ F
Sbjct: 82 YKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFL---------------------- 119
Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS-----LDTVWKVYYE- 1147
+L +GE ++ + L D FE++ AIYLD G + ++ Y E
Sbjct: 120 -------FLGKGE-EKTGGRDRDSILADAFEALLAAIYLDQGYEKIKELFEQEFEFYIEK 171
Query: 1148 IMKSEIERLSVSVPKSPIRELLELE---PENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
IMK E+ + K+ ++E+++ E P + EK R V V V GK G
Sbjct: 172 IMKGEM----LFDYKTALQEIVQSEHKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIATG 227
Query: 1205 IGRNYCIAKCTAAKCALKHL 1224
GR A+ AA+ A + L
Sbjct: 228 KGRTKKEAEKEAARIAYEKL 247
Score = 31.2 bits (69), Expect = 4.1, Method: Composition-based stats.
Identities = 18/67 (26%), Positives = 33/67 (49%)
Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
S ++LE +GD+ L+ + LY YP G L+ ++S S L + ++ G+ +
Sbjct: 61 SNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLF 120
Query: 840 ATKFEPR 846
K E +
Sbjct: 121 LGKGEEK 127
>pdb|3RV0|A Chain A, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|B Chain B, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|C Chain C, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
pdb|3RV0|D Chain D, Crystal Structure Of K. Polysporus Dcr1 Without The
C-Terminal Dsrbd
Length = 341
Score = 43.5 bits (101), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 777 TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
T S +RLE +GDS+L ++ +Y +P+ +EG LS ++ V+N NLF
Sbjct: 125 TQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLF 174
Score = 34.3 bits (77), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
+RLEFLGD+ L L++ +Y + + G L+ ++ ++VNN + +L F
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNF 182
>pdb|2KOU|A Chain A, Dicer Like Protein
Length = 102
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 50/95 (52%), Gaps = 3/95 (3%)
Query: 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
++I ++ +YC+RLP D F + P + E + C I LP N+P+ + +P
Sbjct: 5 SSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI--CRITLPANAPISE-IESSLLP 61
Query: 63 TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI 97
+ A + A ++A L+ L L++ L+P +K+ I
Sbjct: 62 STEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEI 96
>pdb|3RV1|A Chain A, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
pdb|3RV1|B Chain B, Crystal Structure Of The N-Terminal And Rnase Iii Domains
Of K. Polysporus Dcr1 E224q Mutant
Length = 246
Score = 43.5 bits (101), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 777 TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLF 826
T S +RLE +GDS+L ++ +Y +P+ +EG LS ++ V+N NLF
Sbjct: 125 TQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLF 174
Score = 34.3 bits (77), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
+RLEFLGD+ L L++ +Y + + G L+ ++ ++VNN + +L F
Sbjct: 130 ERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNF 182
>pdb|2FFL|A Chain A, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|B Chain B, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|C Chain C, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2FFL|D Chain D, Crystal Structure Of Dicer From Giardia Intestinalis
pdb|2QVW|A Chain A, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|B Chain B, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|C Chain C, Structure Of Giardia Dicer Refined Against Twinned Data
pdb|2QVW|D Chain D, Structure Of Giardia Dicer Refined Against Twinned Data
Length = 756
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 31/57 (54%)
Query: 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
TD +QRLE LGDA+L +++T L S GTL +L+ LV N L LG
Sbjct: 331 TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGL 387
Score = 40.4 bits (93), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 32/50 (64%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQ 831
++LE +GD+FLK ++ + L+ +P + EG L+ +R +N L +L K+
Sbjct: 648 QKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKR 697
Score = 35.4 bits (80), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 16/44 (36%), Positives = 25/44 (56%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNL 825
+RLE +GD+ L + +T L C +P+ G L L+ + V N L
Sbjct: 335 QRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEAL 378
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 18/52 (34%), Positives = 25/52 (48%)
Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
YQ+LE LGDA L + HL+ + G LT +R + N + L R
Sbjct: 647 YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRF 698
>pdb|3O7X|A Chain A, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|B Chain B, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|C Chain C, Crystal Structure Of Human Hili Paz Domain
pdb|3O7X|D Chain D, Crystal Structure Of Human Hili Paz Domain
Length = 140
Score = 35.0 bits (79), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 281 DVIQDIPEKERENFVFDESKFR-DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
DV+ I ++ +E+F + +K +V+ Y N+ + + ++ N P+ F
Sbjct: 7 DVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNR----TYRIDDVDWNKTPKDSFTMSDG 62
Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLL 364
TF EYYS YG+ ++ +QPLL
Sbjct: 63 KEITFLEYYSKNYGITVKEEDQPLL 87
>pdb|3QIR|A Chain A, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|B Chain B, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|C Chain C, Crystal Structure Of Piwil2 Paz Domain
pdb|3QIR|D Chain D, Crystal Structure Of Piwil2 Paz Domain
Length = 148
Score = 34.7 bits (78), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 5/85 (5%)
Query: 281 DVIQDIPEKERENFVFDESKFR-DAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN 339
DV+ I ++ +E+F + +K +V+ Y N+ + + ++ N P+ F
Sbjct: 7 DVMHAIYQQNKEHFQDECTKLLVGNIVITRYNNR----TYRIDDVDWNKTPKDSFTMSDG 62
Query: 340 TYQTFEEYYSLKYGLQIQNLEQPLL 364
TF EYYS YG+ ++ +QPLL
Sbjct: 63 KEITFLEYYSKNYGITVKEEDQPLL 87
>pdb|1J97|A Chain A, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
pdb|1J97|B Chain B, Phospho-Aspartyl Intermediate Analogue Of Phosphoserine
Phosphatase
Length = 211
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 472 FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKE----DDSAVNEICTEIAKVEIVDKKE 527
F + K+KEK G D AN +IV D ++ E ++A EI +IAK+E ++ ++
Sbjct: 102 FDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLED 161
Query: 528 TV 529
TV
Sbjct: 162 TV 163
>pdb|1F5S|A Chain A, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
pdb|1F5S|B Chain B, Crystal Structure Of Phosphoserine Phosphatase From
Methanococcus Jannaschii
Length = 211
Score = 33.1 bits (74), Expect = 1.1, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 472 FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKE----DDSAVNEICTEIAKVEIVDKKE 527
F + K+KEK G D AN +IV D ++ E ++A EI +IAK+E ++ ++
Sbjct: 102 FDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLED 161
Query: 528 TV 529
TV
Sbjct: 162 TV 163
>pdb|1L7M|A Chain A, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7M|B Chain B, High Resolution Liganded Structure Of Phosphoserine
Phosphatase (Pi Complex)
pdb|1L7N|A Chain A, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
pdb|1L7N|B Chain B, Transition State Analogue Of Phosphoserine Phosphatase
(Aluminum Fluoride Complex)
Length = 211
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 472 FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKE----DDSAVNEICTEIAKVEIVDKKE 527
F + K+KEK G D AN +IV D ++ E ++A EI +IAK+E ++ ++
Sbjct: 102 FDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLED 161
Query: 528 TV 529
TV
Sbjct: 162 TV 163
>pdb|1L7O|A Chain A, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7O|B Chain B, Crystal Structure Of Phosphoserine Phosphatase In Apo Form
pdb|1L7P|A Chain A, Substrate Bound Phosphoserine Phosphatase Complex
Structure
pdb|1L7P|B Chain B, Substrate Bound Phosphoserine Phosphatase Complex
Structure
Length = 211
Score = 32.7 bits (73), Expect = 1.1, Method: Composition-based stats.
Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)
Query: 472 FGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKE----DDSAVNEICTEIAKVEIVDKKE 527
F + K+KEK G D AN +IV D ++ E ++A EI +IAK+E ++ ++
Sbjct: 102 FDIAVNKIKEKLGLDYAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAKIEGINLED 161
Query: 528 TV 529
TV
Sbjct: 162 TV 163
>pdb|2L5C|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain
pdb|2L5D|A Chain A, Solution Structures Of Human Piwi-Like 1 Paz Domain With
Ssrna (5'- Pugaca)
Length = 134
Score = 31.6 bits (70), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
VV+ Y N+ + V +I + +P+S F + +F EYY +Y +I +L+QP+L
Sbjct: 42 VVLTKYNNK----TYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVL 97
>pdb|3O6E|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 31.2 bits (69), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
VV+ Y N+ + V +I + +P+S F + +F EYY +Y +I +L+QP+L
Sbjct: 32 VVLTKYNNK----TYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVL 87
>pdb|3O3I|X Chain X, Crystal Structure Of Human Hiwi1 Paz Domain (Residues
277-399) In Complex With 14-Mer Rna (12-Bp + 2-Nt
Overhang) Containing 2'-Oh At Its 3'-End
Length = 124
Score = 31.2 bits (69), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
VV+ Y N+ + V +I + +P+S F + +F EYY +Y +I +L+QP+L
Sbjct: 32 VVLTKYNNK----TYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVL 87
>pdb|3O7V|X Chain X, Crystal Structure Of Human Hiwi1 (V361m) Paz Domain
(Residues 277-399) In Complex With 14-Mer Rna (12-Bp +
2-Nt Overhang) Containing 2'-Och3 At Its 3'-End
Length = 124
Score = 30.4 bits (67), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
VV+ Y N+ + V +I + +P+S F + +F EYY +Y +I +L+QP L
Sbjct: 32 VVLTKYNNK----TYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPXL 87
>pdb|2XFM|A Chain A, Complex Structure Of The Miwi Paz Domain Bound To
Methylated Single Stranded Rna
Length = 150
Score = 30.4 bits (67), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 33/60 (55%), Gaps = 4/60 (6%)
Query: 305 VVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364
+V+ Y N+ + V +I + +P+S F + +F EYY +Y +I +L+QP+L
Sbjct: 33 IVLTKYNNK----TYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVL 88
>pdb|2ANL|A Chain A, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
pdb|2ANL|B Chain B, X-Ray Crystal Structure Of The Aspartic Protease
Plasmepsin 4 From The Malarial Parasite Plasmodium
Malariae Bound To An Allophenylnorstatine Based
Inhibitor
Length = 327
Score = 30.0 bits (66), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 23/58 (39%), Gaps = 11/58 (18%)
Query: 319 FYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL 376
FY+ P F S NTY EYY +PLLD+D T C L L
Sbjct: 244 FYITTCNNKDMPTLEFKSANNTYTLEPEYYM-----------EPLLDIDDTLCMLYIL 290
>pdb|2QBY|B Chain B, Crystal Structure Of A Heterodimer Of Cdc6ORC1 INITIATORS
Bound To Origin Dna (From S. Solfataricus)
Length = 384
Score = 30.0 bits (66), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 127 HKRMASCFTNCRPSVNTP-CYLYAVKMKLTC-PIPDEQNKRGRKIHPPENSPQGLAILTT 184
+K + + NCR TP L ++ KLT +P G I +N + + +
Sbjct: 79 YKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAII- 137
Query: 185 KYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLF 244
Y+ +V + + R G++ V +L+ + +S +SN + DY+ +VL ++F
Sbjct: 138 -YLDEVDTL-VKRRGGDI-VLYQLLRSDANISVIMISNDINVRDYMEPRVLSSLGPSVIF 194
Query: 245 DPNCSENSYFIV 256
P +E FI+
Sbjct: 195 KPYDAEQLKFIL 206
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.406
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,249,087
Number of Sequences: 62578
Number of extensions: 1588901
Number of successful extensions: 3855
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 3770
Number of HSP's gapped (non-prelim): 77
length of query: 1233
length of database: 14,973,337
effective HSP length: 110
effective length of query: 1123
effective length of database: 8,089,757
effective search space: 9084797111
effective search space used: 9084797111
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)