Query psy15484
Match_columns 1233
No_of_seqs 472 out of 2388
Neff 6.4
Searched_HMMs 46136
Date Fri Aug 16 22:18:30 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15484.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15484hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0701|consensus 100.0 9.1E-83 2E-87 812.0 23.7 950 38-1228 451-1600(1606)
2 KOG1817|consensus 100.0 7E-43 1.5E-47 388.8 23.7 342 780-1226 131-503 (533)
3 COG0571 Rnc dsRNA-specific rib 100.0 2.5E-41 5.4E-46 367.2 20.2 219 978-1228 7-233 (235)
4 PRK12371 ribonuclease III; Rev 100.0 2.3E-40 4.9E-45 363.5 21.2 218 978-1228 11-233 (235)
5 PRK12372 ribonuclease III; Rev 100.0 6.4E-40 1.4E-44 373.7 21.2 212 979-1230 3-226 (413)
6 PRK14718 ribonuclease III; Pro 100.0 7.4E-40 1.6E-44 373.9 20.6 209 979-1227 3-223 (467)
7 PRK00102 rnc ribonuclease III; 100.0 1.9E-37 4E-42 341.2 21.4 217 978-1226 4-228 (229)
8 TIGR02191 RNaseIII ribonucleas 100.0 3.7E-36 7.9E-41 328.8 20.2 211 982-1224 1-220 (220)
9 cd02843 PAZ_dicer_like PAZ dom 100.0 4.2E-29 9E-34 241.7 10.2 118 264-383 4-121 (122)
10 PF03368 Dicer_dimer: Dicer di 99.9 3.6E-28 7.8E-33 228.5 8.5 89 4-97 1-89 (90)
11 PF14622 Ribonucleas_3_3: Ribo 99.9 1.8E-26 3.8E-31 231.7 5.9 127 992-1152 1-127 (128)
12 smart00535 RIBOc Ribonuclease 99.9 2.7E-24 5.9E-29 215.7 10.9 127 994-1154 1-127 (129)
13 cd00593 RIBOc RIBOc. Ribonucle 99.9 4.4E-24 9.6E-29 214.9 11.0 130 994-1155 1-130 (133)
14 PF00636 Ribonuclease_3: Ribon 99.8 3.7E-22 8E-27 196.1 2.3 114 782-944 1-114 (114)
15 cd02844 PAZ_CAF_like PAZ domai 99.8 5E-21 1.1E-25 192.5 7.8 115 290-420 20-135 (135)
16 PF00636 Ribonuclease_3: Ribon 99.8 1.2E-21 2.7E-26 192.4 3.1 114 1015-1135 1-114 (114)
17 PRK12371 ribonuclease III; Rev 99.8 1.3E-20 2.8E-25 207.5 11.2 139 722-955 10-148 (235)
18 COG0571 Rnc dsRNA-specific rib 99.8 2.3E-20 5E-25 203.6 10.4 136 725-955 9-146 (235)
19 PRK14718 ribonuclease III; Pro 99.8 7.8E-20 1.7E-24 210.3 9.9 105 779-955 32-136 (467)
20 PRK12372 ribonuclease III; Rev 99.8 1E-19 2.3E-24 208.8 9.8 104 780-955 33-136 (413)
21 cd00593 RIBOc RIBOc. Ribonucle 99.8 1.7E-18 3.7E-23 174.3 9.8 105 779-955 19-123 (133)
22 smart00535 RIBOc Ribonuclease 99.8 2.6E-18 5.7E-23 172.3 10.3 103 779-953 17-119 (129)
23 PF14622 Ribonucleas_3_3: Ribo 99.7 2.1E-18 4.5E-23 173.4 7.3 104 779-955 20-123 (128)
24 PRK00102 rnc ribonuclease III; 99.7 1.9E-17 4.2E-22 182.5 9.7 107 778-956 38-144 (229)
25 KOG1817|consensus 99.7 2.3E-17 5.1E-22 185.6 9.2 107 779-958 309-415 (533)
26 TIGR02191 RNaseIII ribonucleas 99.7 2E-16 4.4E-21 173.3 10.1 106 778-955 32-137 (220)
27 cd02845 PAZ_piwi_like PAZ doma 99.6 2.8E-16 6.1E-21 155.0 6.3 93 298-420 25-117 (117)
28 KOG3769|consensus 99.6 2.8E-14 6E-19 155.3 14.1 215 978-1227 64-304 (333)
29 PF02170 PAZ: PAZ domain; Int 99.5 1.2E-14 2.6E-19 147.5 3.1 109 297-439 25-133 (135)
30 KOG1042|consensus 99.5 4.3E-14 9.4E-19 165.9 5.6 104 298-432 281-384 (845)
31 KOG0701|consensus 99.4 2.3E-13 5E-18 177.3 8.8 163 978-1152 980-1183(1606)
32 cd02825 PAZ PAZ domain, named 98.8 3.9E-09 8.5E-14 104.4 6.5 67 298-367 30-96 (115)
33 PHA02701 ORF020 dsRNA-binding 98.2 2.4E-06 5.2E-11 89.3 7.6 69 1158-1226 107-177 (183)
34 cd02846 PAZ_argonaute_like PAZ 98.2 2E-06 4.2E-11 84.9 6.0 67 299-366 30-97 (114)
35 PHA03103 double-strand RNA-bin 98.2 6.6E-06 1.4E-10 86.7 9.0 90 1138-1227 83-178 (183)
36 cd00048 DSRM Double-stranded R 98.1 9.1E-06 2E-10 71.6 7.3 37 1188-1224 32-68 (68)
37 smart00358 DSRM Double-strande 98.0 1.3E-05 2.7E-10 70.7 7.3 65 1161-1225 1-67 (67)
38 PF00035 dsrm: Double-stranded 98.0 8.4E-06 1.8E-10 72.1 5.9 37 1188-1224 31-67 (67)
39 PLN03202 protein argonaute; Pr 97.9 1E-05 2.3E-10 105.4 5.8 84 298-419 292-385 (900)
40 PF00035 dsrm: Double-stranded 97.0 0.0025 5.4E-08 56.2 7.5 64 4-79 1-67 (67)
41 COG1939 Ribonuclease III famil 96.8 0.0064 1.4E-07 60.3 8.8 106 1014-1149 15-127 (132)
42 cd00048 DSRM Double-stranded R 96.7 0.006 1.3E-07 53.5 7.4 67 3-79 1-68 (68)
43 PF14709 DND1_DSRM: double str 96.5 0.011 2.5E-07 54.8 8.5 72 3-79 2-79 (80)
44 KOG3769|consensus 95.8 0.037 7.9E-07 62.1 9.3 143 778-999 113-258 (333)
45 KOG3732|consensus 95.8 0.016 3.5E-07 66.2 6.4 69 1162-1231 38-111 (339)
46 smart00358 DSRM Double-strande 95.6 0.042 9.2E-07 48.2 7.1 64 5-79 2-66 (67)
47 KOG3732|consensus 94.5 0.07 1.5E-06 61.2 6.5 67 1161-1229 141-214 (339)
48 COG1939 Ribonuclease III famil 94.5 0.21 4.5E-06 49.9 8.9 49 779-828 13-61 (132)
49 PF14709 DND1_DSRM: double str 93.4 0.13 2.9E-06 47.8 5.1 63 1162-1225 1-80 (80)
50 KOG4334|consensus 92.6 0.082 1.8E-06 62.5 3.1 38 1187-1224 404-441 (650)
51 KOG2777|consensus 88.9 0.63 1.4E-05 57.1 6.0 41 1186-1227 115-155 (542)
52 KOG1041|consensus 84.1 1.3 2.8E-05 58.6 5.5 67 298-366 277-345 (876)
53 PHA03103 double-strand RNA-bin 81.6 4.1 8.8E-05 43.8 7.1 68 3-81 110-177 (183)
54 KOG2777|consensus 72.8 8.5 0.00018 47.6 7.3 65 3-83 91-156 (542)
55 PHA02701 ORF020 dsRNA-binding 63.8 22 0.00048 38.2 7.2 67 3-80 109-176 (183)
56 PF11469 Ribonucleas_3_2: Ribo 60.8 24 0.00051 34.3 6.1 93 1016-1155 2-94 (120)
57 PF11469 Ribonucleas_3_2: Ribo 51.8 92 0.002 30.4 8.4 46 784-839 3-50 (120)
58 PF08383 Maf_N: Maf N-terminal 39.7 15 0.00031 28.8 0.9 12 927-938 24-35 (35)
59 PF14954 LIX1: Limb expression 36.0 53 0.0011 36.1 4.7 34 39-75 58-91 (252)
60 PF03368 Dicer_dimer: Dicer di 33.1 87 0.0019 29.8 5.3 42 1187-1228 30-75 (90)
61 PRK02287 hypothetical protein; 29.8 49 0.0011 35.4 3.3 28 929-956 107-134 (171)
62 PF00333 Ribosomal_S5: Ribosom 27.8 1.1E+02 0.0024 27.7 4.7 37 1189-1225 23-63 (67)
63 COG5546 Small integral membran 24.8 1.1E+02 0.0023 28.3 3.9 23 933-960 15-37 (80)
64 PF14954 LIX1: Limb expression 24.6 1.1E+02 0.0024 33.7 4.8 35 1186-1223 55-94 (252)
65 PF04034 DUF367: Domain of unk 21.0 87 0.0019 31.9 3.0 28 929-956 66-93 (127)
No 1
>KOG0701|consensus
Probab=100.00 E-value=9.1e-83 Score=811.95 Aligned_cols=950 Identities=40% Similarity=0.573 Sum_probs=688.8
Q ss_pred eeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCcccchhhhhcccCCCCCCCCCC-C-CCC
Q psy15484 38 IMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTP-E-IET 115 (1233)
Q Consensus 38 ~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~GeLdd~LlP~~~e~~~~~~~~~~~~~~e~-~-~~~ 115 (1233)
..+.-+|+||.++|.+..|.| +|.+||++|++||+++|.+++....+.++....++|. . -.+
T Consensus 451 ~~~~~~v~~~~~~p~~~~~~~----------------~~~~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~ 514 (1606)
T KOG0701|consen 451 VPFLSTVVLPVNSPLKMCIVG----------------LCLKLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEP 514 (1606)
T ss_pred CCcceeEEEecCchHHHHHHH----------------hHHHHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCC
Confidence 457778999999998765666 9999999999999999999998877766555555543 2 268
Q ss_pred CCCccccccccccccccccccCCCCCCCCeEEEEEEeEecCCCCccccccCcccCCCCCCCCceeEEecCCCCCCCCcce
Q psy15484 116 YPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPI 195 (1233)
Q Consensus 116 ~~gs~Kr~~~y~~~~p~~l~~~~p~~~~~~~Ly~i~~~l~~p~~~~~~~~~r~iy~~~~~~~~fglLt~k~LP~ip~FpL 195 (1233)
++|++||+++|.+.++.++..+.+..+++||+|.+.+++..|.++++|.++|.+|.|.....+||+|+.+++|++|.||+
T Consensus 515 ~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~~~~~~~ 594 (1606)
T KOG0701|consen 515 RPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPKIPHFPV 594 (1606)
T ss_pred CCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhcccccccccCchhhhhhhcccchhhhcccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecCcEEEEEEEEcCcceecCHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCcEEEeeecC--CCCCceechhhhh
Q psy15484 196 FTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVS--DSEQIVIDWKFMT 273 (1233)
Q Consensus 196 f~~~g~~~V~l~~~~~~i~lt~eql~~l~~Fh~~lF~dVl~l~k~~~~fd~~~~~~~YllvPl~~--~~~~~~IDW~~v~ 273 (1233)
|+++|++++++........++.+|++....||.++|..|+.+.+..+.|++..+...++|+|... +.....|+|.+|.
T Consensus 595 a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~v~~~~~~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~ 674 (1606)
T KOG0701|consen 595 ATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIFTEVLRLAKINLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLE 674 (1606)
T ss_pred eeccCchhHHHHHhhhhhhcchhhccCcchhcccchhhhhhhhccccccCCchhhHHHHhcccccccccchhhhHHHHHH
Confidence 99999999999988887888999999999999999999999889999999999999999999875 2345779999999
Q ss_pred hhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhC
Q psy15484 274 LISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYG 353 (1233)
Q Consensus 274 ~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kyg 353 (1233)
.+..+...++..+..+.+....|+..+++|++++ |+|.+++++ |+..|.....|.|.||+ ..+.||..||..+|+
T Consensus 675 ~iv~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~--~rn~~~~~~-~~~~v~~~~~pss~~~g--~~~~~~~~v~~~~~~ 749 (1606)
T KOG0701|consen 675 AIVAPSDLMPIPSKDEVRKAKYFDGEDSQDAVGM--YRNDDQPQF-YVAEVLPLLAPSSLFPG--LDYETFNEVYRFKYA 749 (1606)
T ss_pred HHhCcccccCCCChhhhhhhhhcccccchhhhhh--hhcccccce-eeeeeeeeccchhcCCC--cchheeeeeeecccc
Confidence 9887756666666677777899999999999999 999888776 99999999999999999 789999999999999
Q ss_pred ccccCCCCceEEecccccccccccccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHHHHHHHhhhHH
Q psy15484 354 LQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSI 433 (1233)
Q Consensus 354 i~i~~~~QPLL~v~~~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~w~~a~~LPSI 433 (1233)
+.|++..||+++|++++.|+|++.+|..++.|.+++.++..+++.+.+..+.... +|+.+++.|+.+.|+|.+
T Consensus 750 ~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~~-------~h~~~~s~~~~~~~~p~~ 822 (1606)
T KOG0701|consen 750 LTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERLKDESLEHSLI-------IHPALASLWRRAVCLPEI 822 (1606)
T ss_pred chhhhccccccccccchhhhcccCchhhccccceeecccchhhhhhHHHhhccCC-------CCcCcchhhhhhccCcch
Confidence 9999999999999999999999999999999999999998888777666554433 899999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCcccccccCCCCCCccchhhhhhhhccCCCccccccccccccccCCcccccccchhh
Q psy15484 434 LYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEI 513 (1233)
Q Consensus 434 l~Ri~~lLlA~elr~~i~~~~~lg~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 (1233)
|||+ ++.|..++..-|.. + +| .+| + .++++... +......++.. .+.++-. ..
T Consensus 823 v~~v--~~tg~~~s~~ta~~--l----i~-------~~~--~--~i~~~~f~--~~~~~~~~~~~--~~~~~~~----~~ 875 (1606)
T KOG0701|consen 823 LYRV--LLTGALVSLSTAVD--L----IP-------HDF--S--SILSKSFE--KEASKSDKNKD--EYSCDLA----LP 875 (1606)
T ss_pred heee--ccccceeeeecccc--h----hh-------hhh--h--hccchhhc--cccccCCCCcc--ccceeec----cc
Confidence 9999 77777776543331 1 11 111 0 22333321 00000000000 0000000 00
Q ss_pred hhchhhhhhc----cccccccCcCCCccchhhhhhhhccccccccccCCCCCceeccccccccc-c---ccCCC------
Q psy15484 514 CTEIAKVEIV----DKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA-A---GVECK------ 579 (1233)
Q Consensus 514 ~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ei~~~~~~~~-~---~~~~~------ 579 (1233)
+..| ++.+ ..-..+++.+-.. ..-..+ .+..+.. +-.++..+.|++..+ . +....
T Consensus 876 ~~~~--~~~~~~~~~~~~~~~q~av~l--~~~~~~----~~~~~~~---d~~~~n~~~~~~~~~~~~~i~~a~~p~~~~~ 944 (1606)
T KOG0701|consen 876 KENP--VKQVLGKANQLDKVNQQAVEL--QECIQL----HEVGALD---DHLVFNKGVADQVLAKRESISLATRPELVSP 944 (1606)
T ss_pred CCCc--hhhhhchhhhhhHHHhhhhhh--hhhhhh----hcccccc---cccccCccccchhhhhccccccccCcccccc
Confidence 0011 0000 0000000000000 000000 0000000 000000112222211 0 00000
Q ss_pred --CCCCCCCCCCCCC-----CCCCCCCCCCCCCCcccccchhhhhHHHhhccccchhhhhcchhhhhhhhhhhcccccch
Q psy15484 580 --PYPMTPPMFSDDE-----DSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFW 652 (1233)
Q Consensus 580 --~~~~~~~~~~~~~-----~~~~~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~ea~~~~~~~~~~~~~~~~~~~~~~ 652 (1233)
|.+....-.+... .+..+..+.. -. .....|++...- + +.|
T Consensus 945 ~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~--~~-----------------~~~~~E~~e~i~-----------n--~~~ 992 (1606)
T KOG0701|consen 945 FIPEPPTTSHLISNRLSPSSPSNSDLNSLL--PN-----------------KRSDWEAVEKIL-----------N--FRY 992 (1606)
T ss_pred cccCCchhhhhhhhhcCccCCCCCCccccc--cc-----------------cccccccccccc-----------c--cce
Confidence 0000000000000 0000000000 00 001112111000 0 000
Q ss_pred hhhhhccccchhhHHHHhhhchhhhhhhhhhhhhccccccccccCCccccccccccCCCCCCCcchhHHHHHHhhhcccc
Q psy15484 653 EEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINKLNT 732 (1233)
Q Consensus 653 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 732 (1233)
. | . .+.|+ -..+...++
T Consensus 993 ~---------------------------F--------------------------s-~~~~~-i~~~~s~LL-------- 1009 (1606)
T KOG0701|consen 993 V---------------------------F--------------------------S-ISLAS-IALSTSLLL-------- 1009 (1606)
T ss_pred e---------------------------c--------------------------c-ccccc-cccchhHHH--------
Confidence 0 0 0 00000 000000000
Q ss_pred CCcccccccCCCCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchh
Q psy15484 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKL 812 (1233)
Q Consensus 733 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~L 812 (1233)
+.-+.......+++||||+||||+||++++++||++||..+||+|
T Consensus 1010 -----------------------------------EAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egql 1054 (1606)
T KOG0701|consen 1010 -----------------------------------EALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQL 1054 (1606)
T ss_pred -----------------------------------HHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhH
Confidence 111112222478999999999999999999999999999999999
Q ss_pred HHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCC---ccccccCCCCcccCChhH
Q psy15484 813 SHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPA---SLWNCLSLPNLKELSPEK 889 (1233)
Q Consensus 813 s~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~ 889 (1233)
+.+|+..|+|.||+++|..+||++||+.+.|+|...|+|+.+..-. +....+... ..|.. -.+.
T Consensus 1055 s~lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~----~~~k~~~~~~~~~~~~e---------~~e~ 1121 (1606)
T KOG0701|consen 1055 SRLRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNN----VDCKDLSGDQNYILYKE---------LDEK 1121 (1606)
T ss_pred HHHHHhcccccchhhhhhcccchhhccccccccccccccccccccc----ccccccccccccccccc---------hhhh
Confidence 9999999999999999999999999999999999889888732110 000000000 00100 0111
Q ss_pred HHHHhhhccccccccccccccccccccccc--cccCCCchhHHHHHHHHHHHHhcCChhHHH-----HHHHHhcccccCC
Q psy15484 890 VLEIIKQKCVDLDCTVDMNVQSVVPYNLVT--QHSIPDKSIADCVEALIGAYLIECGPRGAL-----LFMSWLGLKVIPP 962 (1233)
Q Consensus 890 ~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~--~~~l~dK~iADvvEALIGA~~l~~G~~~a~-----~~l~wlgi~~~~~ 962 (1233)
+..+...+... ..+++... +.|...|++||++||||||+|+++|..++. +||+|.|+.....
T Consensus 1122 ~~df~e~~~~~-----------~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~~~~~~~~~~~~~~lk~~~~~~dy~ 1190 (1606)
T KOG0701|consen 1122 IKDFQEAMEKE-----------DGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDGGLLETFETIGDSFLKWSITNYDYD 1190 (1606)
T ss_pred hhHHHHhhhcc-----------CCcccccccccceecCCCHHHHHHHHHHhhhhhccchhhhhHHHHHHHhhhhhhhhhh
Confidence 11111111110 01122222 588999999999999999999999999888 9999999876431
Q ss_pred C---------------------------------C---------------------------------------------
Q psy15484 963 V---------------------------------T--------------------------------------------- 964 (1233)
Q Consensus 963 ~---------------------------------~--------------------------------------------- 964 (1233)
. +
T Consensus 1191 ~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~ld~~erl~~~~d~vld~l~~~~~~~ 1270 (1606)
T KOG0701|consen 1191 TLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGLDATERLEFLGDAVLDKLSDKHPFE 1270 (1606)
T ss_pred cccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhcccccccccccchHHHHHhhHHHHHHHHHHhhhHh
Confidence 0 0
Q ss_pred ----------------------------------------------------------------CCCChh----------
Q psy15484 965 ----------------------------------------------------------------NPESKH---------- 970 (1233)
Q Consensus 965 ----------------------------------------------------------------~p~~~~---------- 970 (1233)
.+.+..
T Consensus 1271 ~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sli~~~~~~~~~~s~l~~~~~~~~l~ 1350 (1606)
T KOG0701|consen 1271 VFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEALIGASLSEGGPSSALLFMDWPPILL 1350 (1606)
T ss_pred hhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhccCccchHHHHHHHhhhhhhhccCCCccccccccccccc
Confidence 000000
Q ss_pred ----------h---hHHHHhhHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcc
Q psy15484 971 ----------L---SDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDE 1037 (1233)
Q Consensus 971 ----------~---~~~~~~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~ 1037 (1233)
. ...+. .+..+|..|||.|.+..++.+|+||.||..+..+.||||||||||+|++++|++|+|...
T Consensus 1351 ~i~es~~~~~~~~~~~~l~-~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~qrleflgd~vld~~it~hl~~~~ 1429 (1606)
T KOG0701|consen 1351 DIPESIASPDSIDELRQLL-SFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCYQRLEFLGDAVLDYLITKHLYEDP 1429 (1606)
T ss_pred cccccccccchhHHHHHHH-HHHhhhcccchhhhhhhcccccccccccccCccchhhhhHHHhHHhhhhhhhhhcccccc
Confidence 0 11122 266889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCc
Q psy15484 1038 RAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPK 1117 (1233)
Q Consensus 1038 p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pK 1117 (1233)
+..+||.+|++|+++|+|...|.+|++.++|+|+++.++.+...|.+++..+..++.... .+..+....||
T Consensus 1430 ~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~~~~---------~~~~edievpK 1500 (1606)
T KOG0701|consen 1430 RQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNLDSL---------FGWEEDIEVPK 1500 (1606)
T ss_pred cccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhccccC---------CCchhhcccch
Confidence 999999999999999999999999999999999999999999999999998776542110 23456689999
Q ss_pred chhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHhhccccCcccCCccccCCCEEEEEEEEC
Q psy15484 1118 ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVF 1197 (1233)
Q Consensus 1118 vLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~~~~~~~pk~pl~eL~e~~~~~~~f~~~~~~~~~~~~~v~V~V~ 1197 (1233)
++||+||++.||||+|+| .++.+.+..+...+|+.+++|+....+....|+..+...+.+..+++|.|.
T Consensus 1501 a~gdi~esiagai~~dsg-----------~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~k~~d~~~~~~tv~~~ 1569 (1606)
T KOG0701|consen 1501 ALGDIFESIAGAIKLDSG-----------NMMEPCIEKFWALPPRSPIRELLELHPERALFGKCEKVADAGKVRVTVDVF 1569 (1606)
T ss_pred hhhhhhhcccceeecCcc-----------cccchHhhcCcCCCCccchhhhccccceeeccchhhhhhhccceEEEEEec
Confidence 999999999999999999 456777888888899999999999998888899888888889999999999
Q ss_pred CeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1198 GKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1198 g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
++..+.|.|.+++.||..||+.|++.|....
T Consensus 1570 ~~~~~~~~g~~~~~aK~s~~k~A~~ll~~~~ 1600 (1606)
T KOG0701|consen 1570 NKEVFAGEGRNYRIAKASAAKAALKLLKKLG 1600 (1606)
T ss_pred ccchhhhcchhhhhhhhhHHHHHHHHHHHhh
Confidence 9999999999999999999999999987654
No 2
>KOG1817|consensus
Probab=100.00 E-value=7e-43 Score=388.75 Aligned_cols=342 Identities=31% Similarity=0.391 Sum_probs=262.1
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhh
Q psy15484 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKY 859 (1233)
Q Consensus 780 ~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~ 859 (1233)
.+||||+|||++-.+++|.++|..+|...||-|-..|+.+|-|++|+.+++++.+..|+.-. -|+..+.
T Consensus 131 hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~vqnr~la~lakklrkd~fl~ya----------hg~dl~~- 199 (533)
T KOG1817|consen 131 HNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIVQNRHLAKLAKKLRKDEFLLYA----------HGYDLCF- 199 (533)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHHHhHHHHHHHHHHHHHHHHHHh----------cCcchhh-
Confidence 67999999999999999999999999999999999999999999999999999999988621 1111000
Q ss_pred hHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHHH
Q psy15484 860 LETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939 (1233)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA~ 939 (1233)
. ... ..++|+||||+|||.
T Consensus 200 ----------------------------------------~----------------~E~-----Kha~an~feavi~a~ 218 (533)
T KOG1817|consen 200 ----------------------------------------E----------------TEL-----KHAMANCFEAVIGAK 218 (533)
T ss_pred ----------------------------------------H----------------HHH-----HHHHHHHHHHHhHHH
Confidence 0 001 247899999999999
Q ss_pred HhcCChhHHHHHHH-------------HhcccccCCC-CCCCChhhhHH---HHhhHHHHHHHcCCccCCHhHHHhhccc
Q psy15484 940 LIECGPRGALLFMS-------------WLGLKVIPPV-TNPESKHLSDV---LLDGFDKFEESINYRFKDKSYLLQAMTH 1002 (1233)
Q Consensus 940 ~l~~G~~~a~~~l~-------------wlgi~~~~~~-~~p~~~~~~~~---~~~~~~~le~~LgY~Fk~~~LL~~AlTH 1002 (1233)
|+++|...+-..-+ |..++-.+.. ..|...-+... -...+-++|+++|..|.+.++|.+|||-
T Consensus 219 ~l~g~~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirlla~aft~ 298 (533)
T KOG1817|consen 219 YLDGGLVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLLARAFTL 298 (533)
T ss_pred HHhcchHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhc
Confidence 99999866543321 1111111100 01111000000 0123458999999999999999999999
Q ss_pred ccccCCCC-CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHH
Q psy15484 1003 ASYFLNTL-TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEV 1081 (1233)
Q Consensus 1003 ~Sy~~~~~-~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~ 1081 (1233)
+|-..++. ..+|||||||||+||++++|++||.+||++++|.|+.+|+.+|||++-+.+|..+|||+++.. ++.+.+
T Consensus 299 rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~-n~~~k~- 376 (533)
T KOG1817|consen 299 RSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLIT-NFDLKD- 376 (533)
T ss_pred cCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhh-Ccchhh-
Confidence 99875543 479999999999999999999999999999999999999999999999999999999999973 322110
Q ss_pred HHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHHhhhcC--
Q psy15484 1082 IQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVS-- 1159 (1233)
Q Consensus 1082 i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~~~~~~-- 1159 (1233)
+ .....|.+||+|||+|||+|+|.|. +.+++|+..++.|.|..|..+
T Consensus 377 ---~--------------------------~~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~ 425 (533)
T KOG1817|consen 377 ---F--------------------------QNLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQD 425 (533)
T ss_pred ---h--------------------------hhhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhh
Confidence 0 1234699999999999999999886 999999999999999988754
Q ss_pred --CCCChHHHHHhhc-cccCcccC-Ccc-------ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1160 --VPKSPIRELLELE-PENARFSK-PEK-------LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1160 --~pk~pl~eL~e~~-~~~~~f~~-~~~-------~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
.|++.+++..-.. .+...+.. +.+ ..+++.|.|.|+++|+.+|+|+|+|.+.|+.+||+.||+.++.
T Consensus 426 wndpkskLqq~cl~~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrlat~~G~nik~Ae~rAA~~ALe~~~~ 503 (533)
T KOG1817|consen 426 WNDPKSKLQQCCLTLRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLATGVGSNIKQAEMRAAMQALENLKM 503 (533)
T ss_pred ccCcHHHHHHHHHHHhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEeeccCchHhHHHHHHHHHHHHHHHh
Confidence 4777666643211 11011111 111 1245679999999999999999999999999999999999874
No 3
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=2.5e-41 Score=367.23 Aligned_cols=219 Identities=32% Similarity=0.483 Sum_probs=185.1
Q ss_pred hHHHHHHHcCCccCCHhHHHhhcccccccCCC-CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChH
Q psy15484 978 GFDKFEESINYRFKDKSYLLQAMTHASYFLNT-LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056 (1233)
Q Consensus 978 ~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~-~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~ 1056 (1233)
.+..|++.+||.|+|+.||.+||||+||.+.+ ...+||||||||||||+++|++|||++||+.++|.||.+|+++||++
T Consensus 7 ~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~~ 86 (235)
T COG0571 7 KLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSEE 86 (235)
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999998754 56899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCC
Q psy15484 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136 (1233)
Q Consensus 1057 ~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~ 1136 (1233)
+|+.+|..+||++||+. +++ ++ ...+...++++||+|||+|||||+|+|+
T Consensus 87 ~La~ia~~l~l~~~l~l-g~g---------------------------e~--~~gg~~~~silaD~~EAligAiylD~g~ 136 (235)
T COG0571 87 SLAEIARELGLGDYLRL-GKG---------------------------EE--KSGGRRRESILADAFEALIGAIYLDSGL 136 (235)
T ss_pred HHHHHHHHhCccchhhc-cCC---------------------------hh--hcCCCCchhHHHHHHHHHHHHHHHhCCh
Confidence 99999999999999983 332 11 1233568999999999999999999995
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc----CCCCChHHHHHhhccccC-cccCCc--cccCCCEEEEEEEECCeEEEEEEeCCH
Q psy15484 1137 SLDTVWKVYYEIMKSEIERLSV----SVPKSPIRELLELEPENA-RFSKPE--KLADGRRVRVTVEVFGKGSYKGIGRNY 1209 (1233)
Q Consensus 1137 dl~~v~~~i~~ll~p~i~~~~~----~~pk~pl~eL~e~~~~~~-~f~~~~--~~~~~~~~~v~V~V~g~~~~~G~G~Sk 1209 (1233)
++|++|+.+++.|.++.... .+||+.+||+++...... .|.... ...+.+.|.|.|.|+|..+|+|.|+|+
T Consensus 137 --~~~~~~i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g~G~G~sk 214 (235)
T COG0571 137 --EAARKFILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELGTGKGRSK 214 (235)
T ss_pred --HHHHHHHHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEEEecccCH
Confidence 99999999999999986543 347777777776543211 111111 123567899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhhcC
Q psy15484 1210 CIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1210 k~Ak~~AAk~AL~~L~~~~ 1228 (1233)
|+|++.||+.||+.|....
T Consensus 215 k~AEq~AA~~al~~l~~~~ 233 (235)
T COG0571 215 KEAEQAAAEQALKKLGVKE 233 (235)
T ss_pred HHHHHHHHHHHHHHhcccc
Confidence 9999999999999997654
No 4
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=2.3e-40 Score=363.45 Aligned_cols=218 Identities=25% Similarity=0.315 Sum_probs=177.7
Q ss_pred hHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHH
Q psy15484 978 GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057 (1233)
Q Consensus 978 ~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~ 1057 (1233)
.+..||++|||+|+|+.||.+||||+||... ...+||||||||||||+++|++|||.+||++++|+||.+|+++|||.+
T Consensus 11 ~~~~le~~lgy~F~~~~Ll~~AlTH~S~~~~-~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~~ 89 (235)
T PRK12371 11 TASILEERTGHRFANKERLERALTHSSARAS-KQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAET 89 (235)
T ss_pred HHHHHHHHHCCCCCCHHHHHHHHcCcCcccC-CccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChHH
Confidence 3668999999999999999999999999753 345999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCC
Q psy15484 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137 (1233)
Q Consensus 1058 La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~d 1137 (1233)
|+.+|.++||++||+. +++.. .......++++||+|||+|||||+|+|+
T Consensus 90 La~ia~~lgL~~~i~~-~~~~~-----------------------------~~~~~~~~~ilad~~EAliGAiylD~G~- 138 (235)
T PRK12371 90 CAAIADEIGLHDLIRT-GSDVK-----------------------------KLTGKRLLNVRADVVEALIAAIYLDGGL- 138 (235)
T ss_pred HHHHHHHCCcHHHhcc-Ccchh-----------------------------hcCCcccchHHHHHHHHHHHHHHHcCCH-
Confidence 9999999999999984 22210 0011345799999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHHhhh--cCCCCChHHHHHhhccc-cCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHH
Q psy15484 1138 LDTVWKVYYEIMKSEIERLS--VSVPKSPIRELLELEPE-NARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212 (1233)
Q Consensus 1138 l~~v~~~i~~ll~p~i~~~~--~~~pk~pl~eL~e~~~~-~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~A 1212 (1233)
+.+++|+.++|.|.+.... ..+||+.|+||.+.... .+.|...+. ..+.+.|+|+|+++|...|+|.|+|||+|
T Consensus 139 -~~a~~~i~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~~g~G~sKK~A 217 (235)
T PRK12371 139 -EAARPFIQRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPETGEGRSKRAA 217 (235)
T ss_pred -HHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEEEeeeCCHHHH
Confidence 8999999999999887542 22455556666553211 122322111 12357899999999999999999999999
Q ss_pred HHHHHHHHHHHhhhcC
Q psy15484 1213 KCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1213 k~~AAk~AL~~L~~~~ 1228 (1233)
++.||+.||++|+..+
T Consensus 218 e~~AA~~al~~~~~~~ 233 (235)
T PRK12371 218 EQVAAEKMLEREGVWK 233 (235)
T ss_pred HHHHHHHHHHHhhhhc
Confidence 9999999999997643
No 5
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=6.4e-40 Score=373.75 Aligned_cols=212 Identities=25% Similarity=0.381 Sum_probs=175.4
Q ss_pred HHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHH
Q psy15484 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058 (1233)
Q Consensus 979 ~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~L 1058 (1233)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||++||++++|+||.+|+.+|||.+|
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~~----~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHSA----THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhcccccc----ccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 45799999999999999999999999864 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCH
Q psy15484 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138 (1233)
Q Consensus 1059 a~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl 1138 (1233)
+.+|.++||++||+...... .......+++|+|+|||||||||+|+|+
T Consensus 79 A~IA~~LgL~~~Lrlg~ge~------------------------------~sgg~~~~kILADvfEALIGAIYLDsG~-- 126 (413)
T PRK12372 79 YEIAQALNISEGLRLGEGEL------------------------------RSGGFRRPSILADAFEAIIGAVFLDGGF-- 126 (413)
T ss_pred HHHHHHcCchHhhhcCcchh------------------------------hcCCCCCccHHHHHHHHHHHHHHHhCCH--
Confidence 99999999999998421110 0112457899999999999999999996
Q ss_pred HHHHHHHHHHHHHHHHhhhc----CCCCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeE-EEEEEe
Q psy15484 1139 DTVWKVYYEIMKSEIERLSV----SVPKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKG-SYKGIG 1206 (1233)
Q Consensus 1139 ~~v~~~i~~ll~p~i~~~~~----~~pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~-~~~G~G 1206 (1233)
+.++.|+.++|.|+++.+.. .+||+.||||+|... ...++|. .+...|+|.|+|+|.. .++|.|
T Consensus 127 e~a~~fV~~ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~----~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G 202 (413)
T PRK12372 127 EAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHK----IALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSG 202 (413)
T ss_pred HHHHHHHHHHHHHHHhhcccccccCCHHHHHHHHHHhcC----CCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEe
Confidence 79999999999999887532 245555666655432 2222221 2357899999999855 489999
Q ss_pred CCHHHHHHHHHHHHHHHhhhcCCC
Q psy15484 1207 RNYCIAKCTAAKCALKHLKSAKPA 1230 (1233)
Q Consensus 1207 ~Skk~Ak~~AAk~AL~~L~~~~~~ 1230 (1233)
.|||+|++.||+.||++|+...+.
T Consensus 203 ~SKKeAEQ~AAr~AL~kL~~~~~~ 226 (413)
T PRK12372 203 ASRRAAEQAAAKKALDEVMAAAPM 226 (413)
T ss_pred CCHHHHHHHHHHHHHHHHhcccch
Confidence 999999999999999999865444
No 6
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=7.4e-40 Score=373.92 Aligned_cols=209 Identities=25% Similarity=0.384 Sum_probs=173.5
Q ss_pred HHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHH
Q psy15484 979 FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIF 1058 (1233)
Q Consensus 979 ~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~L 1058 (1233)
+..||++|||+|+|+.||.+||||+||.. .+|||||||||+||+++|++|||.+||++++|+||.+|+.+|||.+|
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys~----e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHSA----THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcCc----ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 45799999999999999999999999964 48999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCH
Q psy15484 1059 ASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSL 1138 (1233)
Q Consensus 1059 a~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl 1138 (1233)
+.+|+++||++||+. +.+ +. .......+++|+|+|||||||||+|+|+
T Consensus 79 A~IAr~LGL~d~Lrl-g~g---------------------------E~--~sgG~~~~sILADvFEALIGAIYLDsG~-- 126 (467)
T PRK14718 79 YEIAQALNISDGLRL-GEG---------------------------EL--RSGGFRRPSILADAFEAIIGAVFLDGGF-- 126 (467)
T ss_pred HHHHHHcCchHHHhh-CCc---------------------------cc--ccCCCCChhHHHHHHHHHHHHHHHccCH--
Confidence 999999999999983 221 00 0112457899999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHhhhc----CCCCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeE-EEEEEe
Q psy15484 1139 DTVWKVYYEIMKSEIERLSV----SVPKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKG-SYKGIG 1206 (1233)
Q Consensus 1139 ~~v~~~i~~ll~p~i~~~~~----~~pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~-~~~G~G 1206 (1233)
+.++.||.++|.|+++.... .+||+.||||+|... ...++|. .+...|.|.|+|+|.. .|+|.|
T Consensus 127 e~a~~fI~~ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~----~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G 202 (467)
T PRK14718 127 EAAQGVIKRLYVPILDHIDPRTLGKDAKTLLQEYLQGHK----IALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSG 202 (467)
T ss_pred HHHHHHHHHHHHHHHhhhcccccccCHHHHHHHHHHhcC----CCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEc
Confidence 89999999999999876532 235555555555432 2223221 2357899999999964 489999
Q ss_pred CCHHHHHHHHHHHHHHHhhhc
Q psy15484 1207 RNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1207 ~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
.|||+|++.||+.||++|+..
T Consensus 203 ~SKKeAEQ~AAk~AL~kL~~~ 223 (467)
T PRK14718 203 ASRRAAEQAAAKKALDEVTAV 223 (467)
T ss_pred CCHHHHHHHHHHHHHHHhccc
Confidence 999999999999999999743
No 7
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=1.9e-37 Score=341.18 Aligned_cols=217 Identities=32% Similarity=0.474 Sum_probs=179.2
Q ss_pred hHHHHHHHcCCccCCHhHHHhhcccccccC-CCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChH
Q psy15484 978 GFDKFEESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056 (1233)
Q Consensus 978 ~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~-~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~ 1056 (1233)
.+..||++|||+|+|+.||.+||||+||.. +....+|||||||||+||+++|++|||.+||+.++|.|+.+|+.+|||.
T Consensus 4 ~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~ 83 (229)
T PRK00102 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREE 83 (229)
T ss_pred hHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHH
Confidence 467899999999999999999999999964 2346799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCC
Q psy15484 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136 (1233)
Q Consensus 1057 ~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~ 1136 (1233)
+|+.+|.++||++|+++.... . .......+|+++|+|||+|||||+|+|+
T Consensus 84 ~la~~a~~lgl~~~i~~~~~~-------------~-----------------~~~~~~~~k~~ad~~EA~iGAiyld~g~ 133 (229)
T PRK00102 84 SLAEIARELGLGEYLLLGKGE-------------E-----------------KSGGRRRPSILADAFEALIGAIYLDQGL 133 (229)
T ss_pred HHHHHHHHCCcHHHHccCcHH-------------H-----------------HcCCCCCccHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999843210 0 0011356899999999999999999996
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc-CCCCChHHHHHhhccccC----cccCCccc--cCCCEEEEEEEECCeEEEEEEeCCH
Q psy15484 1137 SLDTVWKVYYEIMKSEIERLSV-SVPKSPIRELLELEPENA----RFSKPEKL--ADGRRVRVTVEVFGKGSYKGIGRNY 1209 (1233)
Q Consensus 1137 dl~~v~~~i~~ll~p~i~~~~~-~~pk~pl~eL~e~~~~~~----~f~~~~~~--~~~~~~~v~V~V~g~~~~~G~G~Sk 1209 (1233)
+.+++|+.+++.|++..... ....+|+..|.+++++.. .|...... .+.+.|+|+|+++|..+|+|.|.|+
T Consensus 134 --~~~~~~i~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sk 211 (229)
T PRK00102 134 --EAARKFILRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELGEGTGSSK 211 (229)
T ss_pred --HHHHHHHHHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCH
Confidence 89999999999999887653 334566666666554321 22211111 1247899999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy15484 1210 CIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1210 k~Ak~~AAk~AL~~L~~ 1226 (1233)
|+||+.||+.||+.|+.
T Consensus 212 k~Ae~~AA~~Al~~l~~ 228 (229)
T PRK00102 212 KEAEQAAAKQALKKLKE 228 (229)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999999975
No 8
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=3.7e-36 Score=328.84 Aligned_cols=211 Identities=31% Similarity=0.433 Sum_probs=173.2
Q ss_pred HHHHcCCccCCHhHHHhhcccccccCC--CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHH
Q psy15484 982 FEESINYRFKDKSYLLQAMTHASYFLN--TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFA 1059 (1233)
Q Consensus 982 le~~LgY~Fk~~~LL~~AlTH~Sy~~~--~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La 1059 (1233)
||++|||+|+|+.||.+||||+||... ....+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999999753 245799999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHH
Q psy15484 1060 SLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLD 1139 (1233)
Q Consensus 1060 ~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~ 1139 (1233)
.+|.++||++++++..... .......+|++||+|||+|||||+|+|+ +
T Consensus 81 ~~a~~~gl~~~i~~~~~~~------------------------------~~~~~~~~k~~ad~~eAliGAiyld~g~--~ 128 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEE------------------------------KSGGRRRESILADAFEALIGAIYLDSGL--E 128 (220)
T ss_pred HHHHHCCcHHHhccCchHh------------------------------hcCCcccchHHHHHHHHHHHHHHHhCCH--H
Confidence 9999999999998432110 0011356899999999999999999994 8
Q ss_pred HHHHHHHHHHHHHHHhhhcC-CCCChHHHHHhhcccc----CcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHH
Q psy15484 1140 TVWKVYYEIMKSEIERLSVS-VPKSPIRELLELEPEN----ARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIA 1212 (1233)
Q Consensus 1140 ~v~~~i~~ll~p~i~~~~~~-~pk~pl~eL~e~~~~~----~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~A 1212 (1233)
.+++|+.+++.|.+..+... ...+|...|.++|+.. ..|..... ..+.+.|.|+|+++|+.+|+|.|.|+|+|
T Consensus 129 ~~~~~i~~~~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~~g~g~skk~A 208 (220)
T TIGR02191 129 AARKFILKLLIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYGEGKGKSKKEA 208 (220)
T ss_pred HHHHHHHHHHHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEEEeeeCCHHHH
Confidence 99999999999998875422 2345555555555431 22322111 12346899999999999999999999999
Q ss_pred HHHHHHHHHHHh
Q psy15484 1213 KCTAAKCALKHL 1224 (1233)
Q Consensus 1213 k~~AAk~AL~~L 1224 (1233)
|+.||+.||++|
T Consensus 209 ~~~AA~~Al~~l 220 (220)
T TIGR02191 209 EQNAAKAALEKL 220 (220)
T ss_pred HHHHHHHHHHhC
Confidence 999999999875
No 9
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.96 E-value=4.2e-29 Score=241.72 Aligned_cols=118 Identities=58% Similarity=0.994 Sum_probs=108.3
Q ss_pred CceechhhhhhhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccC
Q psy15484 264 QIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT 343 (1233)
Q Consensus 264 ~~~IDW~~v~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~T 343 (1233)
...|||.+|+.|.......|..++++.++.+.|++++|+|+||+|||||.|++++|+|++|++||||.|+||. .+++|
T Consensus 4 ~~~iDw~~~~~i~~~~~~~p~~~~~~~r~~~~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~--~~~~T 81 (122)
T cd02843 4 TLDIDWEFMEKIEANARIGPRATPDEARQPFKFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPG--PEYET 81 (122)
T ss_pred cceechhHHHHHhhhcccCCCCChhHHhhcCCCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCC--CCCcc
Confidence 4569999999986654556677788889999999999999999999999999999999999999999999998 45899
Q ss_pred HHHHHHhhhCccccCCCCceEEeccccccccccccccccc
Q psy15484 344 FEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNR 383 (1233)
Q Consensus 344 y~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~~r~~~~ 383 (1233)
|+|||++|||+.|.+.+||||+||+++.|+|||+||++++
T Consensus 82 y~eYyk~KY~I~I~~~~QPLL~v~~~s~~lNll~pr~~~~ 121 (122)
T cd02843 82 FEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLLTPRYVNQ 121 (122)
T ss_pred HHHHHHHhcCeEeccCCCCcEeecCccccccccCcccccC
Confidence 9999999999999999999999999999999999998765
No 10
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=99.95 E-value=3.6e-28 Score=228.50 Aligned_cols=89 Identities=49% Similarity=0.826 Sum_probs=67.4
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELK 83 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~G 83 (1233)
||++|||||++||+|.|+.++|.|.+...++ +|+|+|+||.||||++ |+|+||++|++|||+|||+||++||++|
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~----~~~c~v~LP~~~pi~~-i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGS----GFICTVILPINSPIRS-IEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-----EEEEEE--TT-SS---EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCC----cEEEEEECCCCCCCCe-EEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999988776 5999999999999996 9999999999999999999999999999
Q ss_pred cccCCCcccchhhh
Q psy15484 84 ELDNDLMPVTKEFI 97 (1233)
Q Consensus 84 eLdd~LlP~~~e~~ 97 (1233)
+|||||+|+.++++
T Consensus 76 ~ldd~L~P~~~~~~ 89 (90)
T PF03368_consen 76 ELDDHLLPISKERV 89 (90)
T ss_dssp S-TTTS--HHHH-S
T ss_pred CCccccCCCCCCcC
Confidence 99999999987654
No 11
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.93 E-value=1.8e-26 Score=231.72 Aligned_cols=127 Identities=38% Similarity=0.613 Sum_probs=101.7
Q ss_pred CHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhh
Q psy15484 992 DKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFF 1071 (1233)
Q Consensus 992 ~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l 1071 (1233)
|+.||.+||||+||... ..++|||||||||+||+++|++|||+++| .++|.++.+|+.+|++++|+.+|.++||++++
T Consensus 1 ~~~Ll~~alTH~S~~~~-~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i 78 (128)
T PF14622_consen 1 DDELLLQALTHKSYAHE-RKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLI 78 (128)
T ss_dssp SHHHHHHHTB-HHHHHH-TCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-
T ss_pred CHHHHHHHhcCcccccc-ccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHH
Confidence 67899999999999743 34799999999999999999999999955 48999999999999999999999999999999
Q ss_pred hhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHH
Q psy15484 1072 KHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151 (1233)
Q Consensus 1072 ~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p 1151 (1233)
+. +++.. .......+|+++|+|||+|||||+|+|+ ++|.+|+.++|.|
T Consensus 79 ~~-~~~~~-----------------------------~~~~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 79 RW-GPGEE-----------------------------KSGGSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp B---HHHH-----------------------------HTTGGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred Hh-CccHh-----------------------------hcCCCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 84 22100 0111355799999999999999999997 8999999998766
Q ss_pred H
Q psy15484 1152 E 1152 (1233)
Q Consensus 1152 ~ 1152 (1233)
.
T Consensus 127 ~ 127 (128)
T PF14622_consen 127 R 127 (128)
T ss_dssp -
T ss_pred c
Confidence 4
No 12
>smart00535 RIBOc Ribonuclease III family.
Probab=99.91 E-value=2.7e-24 Score=215.66 Aligned_cols=127 Identities=40% Similarity=0.622 Sum_probs=111.2
Q ss_pred hHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhh
Q psy15484 994 SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073 (1233)
Q Consensus 994 ~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~ 1073 (1233)
.||.+|||||||..+. .+|||||||||+||+++++.|+|.+||+.++|.|+.+|+.+|+|++|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~~--~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~ 78 (129)
T smart00535 1 SLLLRALTHASYSNEH--EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRL 78 (129)
T ss_pred CHHHHHhhcccccccC--cchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHcc
Confidence 3799999999997543 69999999999999999999999999999999999999999999999999999999999984
Q ss_pred cCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHH
Q psy15484 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153 (1233)
Q Consensus 1074 ~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i 1153 (1233)
..... .......+|++||+|||+|||||+|+|+ +.|++|+.+++.|.+
T Consensus 79 ~~~~~------------------------------~~~~~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~ 126 (129)
T smart00535 79 GRGEA------------------------------ISGGRDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRL 126 (129)
T ss_pred CchHh------------------------------hcCCcccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHh
Confidence 32210 0011357899999999999999999996 899999999998876
Q ss_pred H
Q psy15484 1154 E 1154 (1233)
Q Consensus 1154 ~ 1154 (1233)
+
T Consensus 127 ~ 127 (129)
T smart00535 127 E 127 (129)
T ss_pred c
Confidence 5
No 13
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.90 E-value=4.4e-24 Score=214.90 Aligned_cols=130 Identities=39% Similarity=0.549 Sum_probs=114.5
Q ss_pred hHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhh
Q psy15484 994 SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073 (1233)
Q Consensus 994 ~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~ 1073 (1233)
.||.+||||+||.......+|||||||||+||+++++.|+|.++|+.++|.|+.+|+.+|||++|+.+|.++||++++++
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 37999999999986544579999999999999999999999999999999999999999999999999999999999985
Q ss_pred cCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHH
Q psy15484 1074 LSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153 (1233)
Q Consensus 1074 ~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i 1153 (1233)
...... ......+|++||+|||+|||||+|+|. +.+++|+..++.|.+
T Consensus 81 ~~~~~~------------------------------~~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~ 128 (133)
T cd00593 81 GKGEEK------------------------------SGGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLI 128 (133)
T ss_pred CchHhh------------------------------cCCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHH
Confidence 432210 012467899999999999999999997 899999999999887
Q ss_pred Hh
Q psy15484 1154 ER 1155 (1233)
Q Consensus 1154 ~~ 1155 (1233)
+.
T Consensus 129 ~~ 130 (133)
T cd00593 129 EE 130 (133)
T ss_pred hh
Confidence 75
No 14
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.84 E-value=3.7e-22 Score=196.12 Aligned_cols=114 Identities=34% Similarity=0.497 Sum_probs=88.9
Q ss_pred cchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhH
Q psy15484 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLE 861 (1233)
Q Consensus 782 ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~ 861 (1233)
|||||||||||+|+|+.|||.+||..++|.||.+|+.+|||.+|+++|.++||+.||+..+|++...|.|.+-.
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~------ 74 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNED------ 74 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHH------
Confidence 89999999999999999999999999999999999999999999999999999999999888865433330000
Q ss_pred HHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHHHHh
Q psy15484 862 TALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLI 941 (1233)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA~~l 941 (1233)
+.. .+.....++... .+....|.+||+|||||||+|+
T Consensus 75 --~~~----------------------------------------~~~~~~~~~~~~-~~~~~~k~laD~~EAliGAiyl 111 (114)
T PF00636_consen 75 --LNN----------------------------------------GDSESSISYDPK-NQVLPPKVLADVFEALIGAIYL 111 (114)
T ss_dssp -------------------------------------------------C-SSS--S-SSSHHHHHHHHHHHHHHHHHHH
T ss_pred --HHh----------------------------------------cccccccCCCcc-ccCCccHHHHHHHHHHHHHHHH
Confidence 000 000000111112 4567789999999999999999
Q ss_pred cCC
Q psy15484 942 ECG 944 (1233)
Q Consensus 942 ~~G 944 (1233)
++|
T Consensus 112 d~G 114 (114)
T PF00636_consen 112 DSG 114 (114)
T ss_dssp HTT
T ss_pred hcC
Confidence 998
No 15
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.83 E-value=5e-21 Score=192.55 Aligned_cols=115 Identities=27% Similarity=0.467 Sum_probs=97.9
Q ss_pred hhhcCccCcccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCC-CccCHHHHHHhhhCccccCCCCceEEecc
Q psy15484 290 ERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN-TYQTFEEYYSLKYGLQIQNLEQPLLDVDH 368 (1233)
Q Consensus 290 ~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~-~~~Ty~eYy~~kygi~i~~~~QPLL~v~~ 368 (1233)
...+..|..++++|++|++|||| ++|+|++|. |++|.|+|+.+.+ .+.||+|||+++||+.|.+++||||++++
T Consensus 20 ~~~~~~~~~~~l~g~~V~t~hn~----r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~ 94 (135)
T cd02844 20 HLADGSFCACDLKGSVVTAPHNG----RFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQ 94 (135)
T ss_pred eeccCcccHHHhcCCEEEEcCCC----cEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEec
Confidence 34678889999999999999975 899999999 9999999987544 57899999999999999999999999999
Q ss_pred cccccccccccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCc
Q psy15484 369 TSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFP 420 (1233)
Q Consensus 369 ~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ip 420 (1233)
++.++|||++|... +|+. . ..+..+..++||||||.++++|
T Consensus 95 ~~~~~NlL~~~~~~-~~~~-----~-----~~~~~~~~v~L~PELC~~~~~p 135 (135)
T cd02844 95 IFNLHNLLHNRFEE-KGES-----E-----EKEKDRYFVELPPELCSVIDLP 135 (135)
T ss_pred ccccceeccccccc-cccc-----c-----cccccceEEEeChHHhccccCC
Confidence 99999999999853 3331 0 0112456789999999999987
No 16
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.83 E-value=1.2e-21 Score=192.41 Aligned_cols=114 Identities=41% Similarity=0.658 Sum_probs=84.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhccc
Q psy15484 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094 (1233)
Q Consensus 1015 eRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~ 1094 (1233)
|||||||||||+++|+.|||.+||+.+||.||.+|+++|||++|+.+|+++|||+|++..+..+...+..+.+......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGD- 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcc-
Confidence 8999999999999999999999999999999999999999999999999999999998644443322222110000000
Q ss_pred chhhhhhhhccccCccccCCCCcchhchhhccccchhhcCC
Q psy15484 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135 (1233)
Q Consensus 1095 ~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG 1135 (1233)
..... ..........+|++||+|||+|||||+|+|
T Consensus 80 ----~~~~~--~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 80 ----SESSI--SYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp ------C-S--SS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ----ccccc--CCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 00000 000012345689999999999999999998
No 17
>PRK12371 ribonuclease III; Reviewed
Probab=99.83 E-value=1.3e-20 Score=207.55 Aligned_cols=139 Identities=18% Similarity=0.169 Sum_probs=108.0
Q ss_pred HHHHhhhccccCCcccccccCCCCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHHHHHHHH
Q psy15484 722 EILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLY 801 (1233)
Q Consensus 722 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~vs~~Lf 801 (1233)
+.+..+++..+|.|.++.|..+.-. ++. + . .....|||||||||||||+++|+.+||
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlT--------H~S-------~--~------~~~~~~~eRLEFLGDavL~l~vs~~Lf 66 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALT--------HSS-------A--R------ASKQGNYERLEFLGDRVLGLCVAEMLF 66 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHc--------CcC-------c--c------cCCccchHhHHHHHHHHHHHHHHHHHH
Confidence 3445677778999998877765220 000 0 0 001348999999999999999999999
Q ss_pred HhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCCccccccCCCC
Q psy15484 802 CTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN 881 (1233)
Q Consensus 802 ~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 881 (1233)
.+||+.+||.||.+|+.+|||.+|+.+|+++||+.||+..+ +..
T Consensus 67 ~~~p~~~eG~Lt~~rs~lV~n~~La~ia~~lgL~~~i~~~~----------~~~-------------------------- 110 (235)
T PRK12371 67 EAFPDASEGELSVRLNQLVNAETCAAIADEIGLHDLIRTGS----------DVK-------------------------- 110 (235)
T ss_pred HhCCCCCHHHHHHHHHHHhChHHHHHHHHHCCcHHHhccCc----------chh--------------------------
Confidence 99999999999999999999999999999999999998432 100
Q ss_pred cccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHh
Q psy15484 882 LKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955 (1233)
Q Consensus 882 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA~~l~~G~~~a~~~l~wl 955 (1233)
. .......|.+||+|||||||+|+++|.+.|..|+..+
T Consensus 111 ------------------~------------------~~~~~~~~ilad~~EAliGAiylD~G~~~a~~~i~~~ 148 (235)
T PRK12371 111 ------------------K------------------LTGKRLLNVRADVVEALIAAIYLDGGLEAARPFIQRY 148 (235)
T ss_pred ------------------h------------------cCCcccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 0 0001234899999999999999999999999987644
No 18
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.82 E-value=2.3e-20 Score=203.64 Aligned_cols=136 Identities=28% Similarity=0.401 Sum_probs=107.1
Q ss_pred HhhhccccCCcccccccCC--CCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHHHHHHHHH
Q psy15484 725 ENINKLNTYGSVEKDVKTE--PKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYC 802 (1233)
Q Consensus 725 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~vs~~Lf~ 802 (1233)
..+++..+|.+.++.|..+ .++ ++. +++ . ...|||||||||||||.++|+.|||.
T Consensus 9 ~~l~~~lg~~f~~~~lL~~AltH~-S~~--~e~---------------~-----~~~~nERLEFLGDavL~l~vae~Lf~ 65 (235)
T COG0571 9 EALEKKLGYTFKDKELLEQALTHR-SYA--NEH---------------K-----AVENNERLEFLGDAVLGLVVAEYLFK 65 (235)
T ss_pred HHHHHHhCCCcCCHHHHHHHhcCc-chh--ccc---------------c-----CCcchHHHHhhHHHHHHHHHHHHHHH
Confidence 3456677888888777665 321 111 110 0 25699999999999999999999999
Q ss_pred hCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCCccccccCCCCc
Q psy15484 803 TYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNL 882 (1233)
Q Consensus 803 ~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 882 (1233)
+||+.+||.||.+|+.+||+..|.++|+.+||+.||+..+....
T Consensus 66 ~yP~~~EG~Ls~~ra~lV~~~~La~ia~~l~l~~~l~lg~ge~~------------------------------------ 109 (235)
T COG0571 66 KYPNLPEGELSKLRAALVSEESLAEIARELGLGDYLRLGKGEEK------------------------------------ 109 (235)
T ss_pred HCCCCCHHHHHHHHHHHHHHHHHHHHHHHhCccchhhccCChhh------------------------------------
Confidence 99999999999999999999999999999999999986542210
Q ss_pred ccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHHHHhcCChhHHHHHHHHh
Q psy15484 883 KELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955 (1233)
Q Consensus 883 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA~~l~~G~~~a~~~l~wl 955 (1233)
.| ..-.++.+||+|||||||+|+++|++.+..|+..+
T Consensus 110 ------------------~g------------------g~~~~silaD~~EAligAiylD~g~~~~~~~i~~l 146 (235)
T COG0571 110 ------------------SG------------------GRRRESILADAFEALIGAIYLDSGLEAARKFILKL 146 (235)
T ss_pred ------------------cC------------------CCCchhHHHHHHHHHHHHHHHhCChHHHHHHHHHH
Confidence 00 11146899999999999999999999999886433
No 19
>PRK14718 ribonuclease III; Provisional
Probab=99.80 E-value=7.8e-20 Score=210.32 Aligned_cols=105 Identities=26% Similarity=0.413 Sum_probs=90.7
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||+||+++|+.|||.+||+.+||.||.+|+.+|||.+|.++|+++||..||+... +..
T Consensus 32 e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetLA~IAr~LGL~d~Lrlg~----------gE~--- 98 (467)
T PRK14718 32 THNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISDGLRLGE----------GEL--- 98 (467)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHHHHHHHHcCchHHHhhCC----------ccc---
Confidence 3899999999999999999999999999999999999999999999999999999999998432 000
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
.......++++||+|||||||
T Consensus 99 -----------------------------------------------------------~sgG~~~~sILADvFEALIGA 119 (467)
T PRK14718 99 -----------------------------------------------------------RSGGFRRPSILADAFEAIIGA 119 (467)
T ss_pred -----------------------------------------------------------ccCCCCChhHHHHHHHHHHHH
Confidence 000123568999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|+++|++.+..|+..+
T Consensus 120 IYLDsG~e~a~~fI~~l 136 (467)
T PRK14718 120 VFLDGGFEAAQGVIKRL 136 (467)
T ss_pred HHHccCHHHHHHHHHHH
Confidence 99999999999887644
No 20
>PRK12372 ribonuclease III; Reviewed
Probab=99.79 E-value=1e-19 Score=208.77 Aligned_cols=104 Identities=27% Similarity=0.420 Sum_probs=90.5
Q ss_pred CCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhh
Q psy15484 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKY 859 (1233)
Q Consensus 780 ~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~ 859 (1233)
||||||||||+||+++|+.|||.+||+.+||.||.+|+.+|||.+|..+|+.+||..||+... |..
T Consensus 33 ~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tLA~IA~~LgL~~~Lrlg~----------ge~---- 98 (413)
T PRK12372 33 HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSLYEIAQALNISEGLRLGE----------GEL---- 98 (413)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHHHHHHHHcCchHhhhcCc----------chh----
Confidence 799999999999999999999999999999999999999999999999999999999998432 000
Q ss_pred hHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHHH
Q psy15484 860 LETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939 (1233)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA~ 939 (1233)
.......+|++||+|||||||+
T Consensus 99 ----------------------------------------------------------~sgg~~~~kILADvfEALIGAI 120 (413)
T PRK12372 99 ----------------------------------------------------------RSGGFRRPSILADAFEAIIGAV 120 (413)
T ss_pred ----------------------------------------------------------hcCCCCCccHHHHHHHHHHHHH
Confidence 0001235689999999999999
Q ss_pred HhcCChhHHHHHHHHh
Q psy15484 940 LIECGPRGALLFMSWL 955 (1233)
Q Consensus 940 ~l~~G~~~a~~~l~wl 955 (1233)
|+|+|++.+..|+..+
T Consensus 121 YLDsG~e~a~~fV~~l 136 (413)
T PRK12372 121 FLDGGFEAAQGVIKRL 136 (413)
T ss_pred HHhCCHHHHHHHHHHH
Confidence 9999999999887655
No 21
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.76 E-value=1.7e-18 Score=174.30 Aligned_cols=105 Identities=34% Similarity=0.505 Sum_probs=93.9
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.++||||||||++|+++++.++|..||..++|.|+.+|+.+|||++|.++|.+.||+.||+..+....
T Consensus 19 ~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~~~~~~------------ 86 (133)
T cd00593 19 FNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLGKGEEK------------ 86 (133)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccCchHhh------------
Confidence 68999999999999999999999999999999999999999999999999999999999985532210
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
.......|.+||+|||||||
T Consensus 87 ------------------------------------------------------------~~~~~~~k~~ad~~eAliGA 106 (133)
T cd00593 87 ------------------------------------------------------------SGGRLRPKILADVFEALIGA 106 (133)
T ss_pred ------------------------------------------------------------cCCcccccHHHHHHHHHHHH
Confidence 01235679999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|+++|.+.+.+||.++
T Consensus 107 iyld~g~~~~~~~i~~~ 123 (133)
T cd00593 107 IYLDGGFEAARKFLLRL 123 (133)
T ss_pred HHHhCCHHHHHHHHHHH
Confidence 99999999999999986
No 22
>smart00535 RIBOc Ribonuclease III family.
Probab=99.75 E-value=2.6e-18 Score=172.33 Aligned_cols=103 Identities=37% Similarity=0.504 Sum_probs=90.2
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.++||||||||+||+++++.|+|.+||..++|.|+.+|+.+|||++|.++|.+.||+.+|+..++...+
T Consensus 17 ~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~~~~~----------- 85 (129)
T smart00535 17 EHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRGEAIS----------- 85 (129)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCchHhhc-----------
Confidence 589999999999999999999999999999999999999999999999999999999999854321100
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
......|.+||+|||+|||
T Consensus 86 -------------------------------------------------------------~~~~~~k~~a~~~eAliGA 104 (129)
T smart00535 86 -------------------------------------------------------------GGRDKPSILADVFEALIGA 104 (129)
T ss_pred -------------------------------------------------------------CCcccchHHHHHHHHHHHH
Confidence 0113568999999999999
Q ss_pred HHhcCChhHHHHHHH
Q psy15484 939 YLIECGPRGALLFMS 953 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~ 953 (1233)
+|+++|.+.+.+|+.
T Consensus 105 i~ld~g~~~~~~~i~ 119 (129)
T smart00535 105 IYLDSGLEAAREFIR 119 (129)
T ss_pred HHHhCCHHHHHHHHH
Confidence 999999999988874
No 23
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.74 E-value=2.1e-18 Score=173.36 Aligned_cols=104 Identities=36% Similarity=0.466 Sum_probs=84.3
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||++|+++++.|||.++|. +||.|+..|+.+|||.+|.++|+++||..+|+..+ +..
T Consensus 20 ~~nerLefLGd~vL~~~vs~~l~~~~~~-~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~~~~----------~~~--- 85 (128)
T PF14622_consen 20 PNNERLEFLGDAVLGLVVSEYLFQRPPA-DEGELTRLRSNLVSNETLAEIAKQLGLDKLIRWGP----------GEE--- 85 (128)
T ss_dssp B-SHHHHHHHHHHHHHHHHHHHHHHTTT-SCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B--H----------HHH---
T ss_pred CccHHHHHHHHHHHHHHHHHHHHhCcCc-cchHHHHHHHHHhChHHHHHHHHHCCHHHHHHhCc----------cHh---
Confidence 5899999999999999999999999665 89999999999999999999999999999997311 000
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
.......+|.+||||||||||
T Consensus 86 -----------------------------------------------------------~~~~~~~~~vlad~feAliGA 106 (128)
T PF14622_consen 86 -----------------------------------------------------------KSGGSGSDKVLADVFEALIGA 106 (128)
T ss_dssp -----------------------------------------------------------HTTGGG-HHHHHHHHHHHHHH
T ss_pred -----------------------------------------------------------hcCCCCCccHHHhHHHHHHHH
Confidence 001123468999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|++.|.+.|..|+...
T Consensus 107 iyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 107 IYLDSGFEAARKFIQKL 123 (128)
T ss_dssp HHHHH-HHHHHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHH
Confidence 99999999999998644
No 24
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.71 E-value=1.9e-17 Score=182.49 Aligned_cols=107 Identities=30% Similarity=0.430 Sum_probs=91.6
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
..||||||||||++|+++++.|||.+||..++|.||.+|+.+|||.+|..+|.++||+.||+..+-. .
T Consensus 38 ~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~~la~~a~~lgl~~~i~~~~~~----------~-- 105 (229)
T PRK00102 38 LKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREESLAEIARELGLGEYLLLGKGE----------E-- 105 (229)
T ss_pred cccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHccCcHH----------H--
Confidence 4589999999999999999999999999999999999999999999999999999999999743200 0
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
. .......|.+||+|||+||
T Consensus 106 ------------------------------------------~------------------~~~~~~~k~~ad~~EA~iG 125 (229)
T PRK00102 106 ------------------------------------------K------------------SGGRRRPSILADAFEALIG 125 (229)
T ss_pred ------------------------------------------H------------------cCCCCCccHHHHHHHHHHH
Confidence 0 0001245899999999999
Q ss_pred HHHhcCChhHHHHHHHHhc
Q psy15484 938 AYLIECGPRGALLFMSWLG 956 (1233)
Q Consensus 938 A~~l~~G~~~a~~~l~wlg 956 (1233)
|+|+++|...+..|+..+-
T Consensus 126 Aiyld~g~~~~~~~i~~~~ 144 (229)
T PRK00102 126 AIYLDQGLEAARKFILRLF 144 (229)
T ss_pred HHHHhCCHHHHHHHHHHHH
Confidence 9999999999999987663
No 25
>KOG1817|consensus
Probab=99.70 E-value=2.3e-17 Score=185.63 Aligned_cols=107 Identities=36% Similarity=0.493 Sum_probs=93.7
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
-++|||||||||||.+++|.+||.+||..|||.||.+|+.+|||++-.++|..+|+++|++.. |++++
T Consensus 309 gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n-~~~k~----------- 376 (533)
T KOG1817|consen 309 GHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITN-FDLKD----------- 376 (533)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhC-cchhh-----------
Confidence 478999999999999999999999999999999999999999999999999999999999843 33210
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
.+.+.-|.+||++||.|||
T Consensus 377 -------------------------------------------------------------~~~lk~K~~ADlfEAfiGa 395 (533)
T KOG1817|consen 377 -------------------------------------------------------------FQNLKLKDYADLFEAFIGA 395 (533)
T ss_pred -------------------------------------------------------------hhhhhHHHHHHHHHHHHHH
Confidence 1234569999999999999
Q ss_pred HHhcCChhHHHHHHHHhccc
Q psy15484 939 YLIECGPRGALLFMSWLGLK 958 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wlgi~ 958 (1233)
.|+|.|+..+..|++.+-.+
T Consensus 396 LyvD~~le~~~qf~~~l~~P 415 (533)
T KOG1817|consen 396 LYVDKGLEYCRQFLRVLFFP 415 (533)
T ss_pred HhhcCCcHHHHHHHHHHhhH
Confidence 99999999999998876543
No 26
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.66 E-value=2e-16 Score=173.28 Aligned_cols=106 Identities=30% Similarity=0.466 Sum_probs=90.9
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
..+|||||||||++|+++++.|||.+||..++|.||.+|+.+|||.+|..+|.++||+.||+..+ +..
T Consensus 32 ~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~gl~~~i~~~~----------~~~-- 99 (220)
T TIGR02191 32 VKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLAEVARELGLGKFLLLGK----------GEE-- 99 (220)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHHHHHHHCCcHHHhccCc----------hHh--
Confidence 35999999999999999999999999999999999999999999999999999999999997331 100
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
.....-..|.+||+|||+||
T Consensus 100 ------------------------------------------------------------~~~~~~~~k~~ad~~eAliG 119 (220)
T TIGR02191 100 ------------------------------------------------------------KSGGRRRESILADAFEALIG 119 (220)
T ss_pred ------------------------------------------------------------hcCCcccchHHHHHHHHHHH
Confidence 00011236899999999999
Q ss_pred HHHhcCChhHHHHHHHHh
Q psy15484 938 AYLIECGPRGALLFMSWL 955 (1233)
Q Consensus 938 A~~l~~G~~~a~~~l~wl 955 (1233)
|+|+++|.+.|..|+..+
T Consensus 120 Aiyld~g~~~~~~~i~~~ 137 (220)
T TIGR02191 120 AIYLDSGLEAARKFILKL 137 (220)
T ss_pred HHHHhCCHHHHHHHHHHH
Confidence 999999999999888765
No 27
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.63 E-value=2.8e-16 Score=155.02 Aligned_cols=93 Identities=30% Similarity=0.534 Sum_probs=76.4
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~ 377 (1233)
...++|.+|+++|+| ++|.|++|+++++|.|+|+...+...||++||+++||+.|.+++||||++....
T Consensus 25 ~~~l~g~~V~t~yn~----k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~------- 93 (117)
T cd02845 25 EKELIGSIVLTRYNN----KTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKR------- 93 (117)
T ss_pred HHHcCCCEEEEeeCC----eEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCccccCCCCcEEeeccc-------
Confidence 466889999999976 899999999999999999875445789999999999999999999999773110
Q ss_pred ccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCc
Q psy15484 378 PRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFP 420 (1233)
Q Consensus 378 ~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ip 420 (1233)
+..++.....+|||||||.++||+
T Consensus 94 -------------------~~~~~~~~~~iyL~pElC~ltglt 117 (117)
T cd02845 94 -------------------RDPRGGEKEPIYLIPELCFLTGLT 117 (117)
T ss_pred -------------------cccCCCCCcEEEEchHHhhhcCCC
Confidence 000122356799999999999985
No 28
>KOG3769|consensus
Probab=99.56 E-value=2.8e-14 Score=155.33 Aligned_cols=215 Identities=19% Similarity=0.198 Sum_probs=167.7
Q ss_pred hHHHHHHHcC-CccCCHhHHHhhcccccccCC----------------CCCCCchHHHHHHHHHHHHHHHHHHHhcccCC
Q psy15484 978 GFDKFEESIN-YRFKDKSYLLQAMTHASYFLN----------------TLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040 (1233)
Q Consensus 978 ~~~~le~~Lg-Y~Fk~~~LL~~AlTH~Sy~~~----------------~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~ 1040 (1233)
.+.+|.++|| -.| ...+|..|||.+||... -...+|+-|--.|..++++.|++||-.+||.+
T Consensus 64 el~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrl 142 (333)
T KOG3769|consen 64 ELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRL 142 (333)
T ss_pred HHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence 4778999999 556 67899999999998742 13468999999999999999999999999999
Q ss_pred CCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchh
Q psy15484 1041 SPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALG 1120 (1233)
Q Consensus 1041 ~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLa 1120 (1233)
+...+..+-+.+.+.++||.+|..+|+.++++...... .......+...
T Consensus 143 P~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~-------------------------------~~eisq~ess~ 191 (333)
T KOG3769|consen 143 PEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPK-------------------------------VGEISQDESSR 191 (333)
T ss_pred cHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCC-------------------------------chhhhHHHHHH
Confidence 99999999999999999999999999988776221110 00112235677
Q ss_pred chhhccccchhhcCCCCHHHHHHHHHHHH-HHHHHhhhcCCCCChHHHHHhhccccCcccCCccc--------cCCCEEE
Q psy15484 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIM-KSEIERLSVSVPKSPIRELLELEPENARFSKPEKL--------ADGRRVR 1191 (1233)
Q Consensus 1121 DvfEAlIGAIylDsG~dl~~v~~~i~~ll-~p~i~~~~~~~pk~pl~eL~e~~~~~~~f~~~~~~--------~~~~~~~ 1191 (1233)
+++-|++|+++...|+ ..|++||...| ...++.-..-.+..|.+.|..+|.+. ..+.+++. ...+.|.
T Consensus 192 ~aI~Al~~~~~~ek~~--~~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~-~l~epe~Rll~esGr~S~~Pvyv 268 (333)
T KOG3769|consen 192 RAIGALLGSVGLEKGF--NFVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRR-GLKEPESRLLAESGRNSAEPVYV 268 (333)
T ss_pred HHHHHHHhcccHHHHH--HHHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHc-CCCCchhHHHHHhccCccCceEE
Confidence 8888999998888876 56777766553 33333212234788999999988763 34444432 2347899
Q ss_pred EEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1192 VTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1192 v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
|+++.+.+.+|+|.|.|.+.|+..||.+||.++=..
T Consensus 269 VgiYs~kkllGqG~Gesl~~A~e~AA~dAL~k~y~~ 304 (333)
T KOG3769|consen 269 VGIYSGKKLLGQGQGESLKLAEEQAARDALIKLYDH 304 (333)
T ss_pred EEeecCchhhccCcchHHHHHHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999988543
No 29
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.48 E-value=1.2e-14 Score=147.52 Aligned_cols=109 Identities=27% Similarity=0.401 Sum_probs=90.2
Q ss_pred CcccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEecccccccccc
Q psy15484 297 DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL 376 (1233)
Q Consensus 297 ~~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL 376 (1233)
..+.++|..|.++|++.. +.|.|.+|.++.+|.++|+...+..+||+|||+++||+.|.+++||||.++...
T Consensus 25 ~~~~lkg~~V~~~~~~~~--r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~------ 96 (135)
T PF02170_consen 25 LERALKGLKVTTTYNNNK--RTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKK------ 96 (135)
T ss_dssp HHHHHTTEEEEETTTTCC--EEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT---SSTTSEEEEECSTT------
T ss_pred HHHHcCCcEEEEecCCCc--eEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhcccccCCCCeEEeccCC------
Confidence 467899999999998854 899999999999999999986568999999999999999999999999663100
Q ss_pred cccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHHHHHHHhhhHHHHHHHH
Q psy15484 377 TPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNA 439 (1233)
Q Consensus 377 ~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~w~~a~~LPSIl~Ri~~ 439 (1233)
....++||||||.+.|++...|....++||+|+|.++
T Consensus 97 --------------------------~~~~~~lP~Elc~i~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 97 --------------------------KKQPIYLPPELCFIVPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp --------------------------TTTCEEEECCGEEEETTTBB-SS--HHHHHHHHHHHS
T ss_pred --------------------------CCceEEEChhHhcccCCcHHHHhccHHHHHHHHHHHh
Confidence 1147899999999999999999999999999999875
No 30
>KOG1042|consensus
Probab=99.45 E-value=4.3e-14 Score=165.85 Aligned_cols=104 Identities=23% Similarity=0.437 Sum_probs=85.9
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~ 377 (1233)
...+.|.||++.||| ++|.|++|+|+.||.|+|...+ +.+||+|||+++|||+|+|.+||||-
T Consensus 281 ~~~~~glivLT~YNN----ktyriddvD~~~tP~stF~k~d-geIs~veYyk~qYni~I~dl~QPlli------------ 343 (845)
T KOG1042|consen 281 NKNVIGLIVLTRYNN----KTYRIDDVDFSQTPLSTFKKDD-GEISFVEYYKKQYNIEITDLNQPLLI------------ 343 (845)
T ss_pred HHHhcceEEEEecCC----ceeeeeccccCcCccceeeecC-ceeeHhHHHHHhcCeEEeeCCcceEe------------
Confidence 456889999999999 8999999999999999998754 58999999999999999999999991
Q ss_pred ccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHHHHHHHhhhH
Q psy15484 378 PRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASLWRKSVSLPS 432 (1233)
Q Consensus 378 ~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~w~~a~~LPS 432 (1233)
|+.++|..++..++..+||||||+.+|+.+.|-.-...+=.
T Consensus 344 --------------S~~k~K~~~g~~~q~~~lIPELc~~TGLtd~mr~dF~~Mka 384 (845)
T KOG1042|consen 344 --------------SEPKDKRPKGEPPQLAMLIPELCFLTGLTDEMRSDFQLMKA 384 (845)
T ss_pred --------------ccCcccCCCCCCccceeeehhhhhccCCcHHHHhhHHHHHH
Confidence 11112222345678899999999999999999766655433
No 31
>KOG0701|consensus
Probab=99.41 E-value=2.3e-13 Score=177.33 Aligned_cols=163 Identities=31% Similarity=0.450 Sum_probs=125.7
Q ss_pred hHHHHHHHcC--CccCCH--------hHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHH
Q psy15484 978 GFDKFEESIN--YRFKDK--------SYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTD 1047 (1233)
Q Consensus 978 ~~~~le~~Lg--Y~Fk~~--------~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~ 1047 (1233)
..+.+|+++. |.|.+. .+|++||||+++. ...+|||||+|||++|++.++.|||.+||+..||+|+.
T Consensus 980 ~~E~~e~i~n~~~~Fs~~~~~i~~~~s~LLEAlT~~~~~---~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~ 1056 (1606)
T KOG0701|consen 980 DWEAVEKILNFRYVFSISLASIALSTSLLLEALTTSSCQ---DSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSR 1056 (1606)
T ss_pred cccccccccccceeccccccccccchhHHHHHhhcCccc---cchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHH
Confidence 4678899998 999999 9999999999987 46799999999999999999999999999999999999
Q ss_pred HHHHhhChHHHHHHHHHcCcchhhhhcCcc-------------------------------hHHHHHHHHHHhhhcccch
Q psy15484 1048 LRSALVNNIIFASLAVRLGFHHFFKHLSPG-------------------------------LHEVIQRFVKMQAENDFTL 1096 (1233)
Q Consensus 1048 lRsalVsN~~La~iA~~lgL~~~l~~~s~~-------------------------------l~~~i~~~v~~~~~~~~~~ 1096 (1233)
+|+.+|+|..|+++|+..||..++++.... +.+.+..|.......+
T Consensus 1057 lr~~~~~~~nl~~la~~~gl~~~~~~~~fep~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~--- 1133 (1606)
T KOG0701|consen 1057 LRDVNVSNDNLARLAVKKGLYSYLRHEGFEPSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKED--- 1133 (1606)
T ss_pred HHHhcccccchhhhhhcccchhhcccccccccccccccccccccccccccccccccccccchhhhhhHHHHhhhccC---
Confidence 999999999999999999999999987322 2223333322211100
Q ss_pred hhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHH
Q psy15484 1097 NQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152 (1233)
Q Consensus 1097 ~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~ 1152 (1233)
..+.. .+.......||.++|++||++||+|+|+|++ .+..-+..++|+..
T Consensus 1134 -~~~~~----~~~~~~~~~~ks~adl~eaLlga~~vD~~~~-~~~~~~~~~~lk~~ 1183 (1606)
T KOG0701|consen 1134 -GDSRS----KGGDHDWLAPKSPADLLEALLGAIYVDGGLL-ETFETIGDSFLKWS 1183 (1606)
T ss_pred -Ccccc----cccccceecCCCHHHHHHHHHHhhhhhccch-hhhhHHHHHHHhhh
Confidence 00000 1111246889999999999999999999984 34434455556533
No 32
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=98.85 E-value=3.9e-09 Score=104.40 Aligned_cols=67 Identities=19% Similarity=0.270 Sum_probs=55.8
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEec
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVD 367 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~ 367 (1233)
...++|..|.+.|+. .++.|.|.++.+.-+|.+ |+...+..+||+|||+++||+.|.+++||||.+.
T Consensus 30 ~~~lkg~~V~~~h~~--~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~kY~~~l~~p~~Pll~~~ 96 (115)
T cd02825 30 TKELKGLKVEDTHNP--LNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKERYNLTLTDLNQPLLIVK 96 (115)
T ss_pred HHHcCCCEEEEecCC--CceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHHcCCcccCCCCCEEEec
Confidence 456789999988873 348899999998777766 8655567899999999999999999999999664
No 33
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.23 E-value=2.4e-06 Score=89.35 Aligned_cols=69 Identities=20% Similarity=0.133 Sum_probs=53.6
Q ss_pred cCCCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1158 VSVPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1158 ~~~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
..+||+.|||+.|.......|..... ..+.+.|+|.|.|+|..+++|.|+|||+||++||+.||+.|..
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l~Y~li~~~GpdH~~~Ftv~V~V~g~~~g~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPLEFCETRSGGHDHCPLFTCTIVVSGKVVATASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCccHHHHHHHHhcCCCCeEEEEEeECCCCCceEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHHHHHh
Confidence 34688888888887543333322111 1345889999999999999999999999999999999999864
No 34
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=98.21 E-value=2e-06 Score=84.92 Aligned_cols=67 Identities=13% Similarity=0.243 Sum_probs=55.4
Q ss_pred ccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCC-CccCHHHHHHhhhCccccCCCCceEEe
Q psy15484 299 SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTN-TYQTFEEYYSLKYGLQIQNLEQPLLDV 366 (1233)
Q Consensus 299 ~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~-~~~Ty~eYy~~kygi~i~~~~QPLL~v 366 (1233)
..++|..|.+.|+. ...+.|.|.++.++..+...|+...+ ..+|++|||+++||+.+.++++|+|.+
T Consensus 30 ~~lkgl~v~~~~~~-~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~ 97 (114)
T cd02846 30 KALKGLKVEVTHRG-NTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQV 97 (114)
T ss_pred HHhCCCEEEEEcCC-CCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEe
Confidence 44668888888864 22488999999999888999986443 489999999999999999999999944
No 35
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.15 E-value=6.6e-06 Score=86.71 Aligned_cols=90 Identities=16% Similarity=0.097 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHHHHHh-----hhcCCCCChHHHHHhhccccCcccCCc-cccCCCEEEEEEEECCeEEEEEEeCCHHH
Q psy15484 1138 LDTVWKVYYEIMKSEIER-----LSVSVPKSPIRELLELEPENARFSKPE-KLADGRRVRVTVEVFGKGSYKGIGRNYCI 1211 (1233)
Q Consensus 1138 l~~v~~~i~~ll~p~i~~-----~~~~~pk~pl~eL~e~~~~~~~f~~~~-~~~~~~~~~v~V~V~g~~~~~G~G~Skk~ 1211 (1233)
.+.--+++.+++.+.+.. +...+|++.|+|+.|.......+...+ -..+.+.|+|.|.|+|+..++|.|+|||+
T Consensus 83 ~~~~~~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~y~~i~~~Gp~H~p~F~v~V~I~g~~~g~G~G~SKKe 162 (183)
T PHA03103 83 REKSMREDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDWSINITSSGPSHSPTFTASVIISGIKFKPAIGSTKKE 162 (183)
T ss_pred cchhHHHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCeEEEEEeeCCCCCceEEEEEEECCEEEEEeeeCCHHH
Confidence 344556667776666532 112357788888877654322111111 12346889999999999999999999999
Q ss_pred HHHHHHHHHHHHhhhc
Q psy15484 1212 AKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1212 Ak~~AAk~AL~~L~~~ 1227 (1233)
||+.||+.||..|...
T Consensus 163 AEQ~AAk~AL~~L~~~ 178 (183)
T PHA03103 163 AKNNAAKLAMDKILNY 178 (183)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998653
No 36
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.09 E-value=9.1e-06 Score=71.63 Aligned_cols=37 Identities=41% Similarity=0.362 Sum_probs=35.0
Q ss_pred CEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHh
Q psy15484 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224 (1233)
Q Consensus 1188 ~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L 1224 (1233)
+.|+|.|.++|...++|.|.|+|+||+.||+.||..|
T Consensus 32 ~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 32 PRFTVEVTVGGKITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred CeEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHhC
Confidence 6899999999989999999999999999999999875
No 37
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.04 E-value=1.3e-05 Score=70.74 Aligned_cols=65 Identities=32% Similarity=0.325 Sum_probs=46.8
Q ss_pred CCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhh
Q psy15484 1161 PKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~ 1225 (1233)
|++.|+|+.+.....+.|..... ..+.+.|.|.|.++|..++.|.|.|+|+||+.||+.||+.|.
T Consensus 1 p~~~L~e~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGLPPEYELVKEEGPDHAPRFTVTVKVGGEYTGEGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCCCCEEEEEeeeCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHhcC
Confidence 56666676664432223322111 112358999999999999999999999999999999999873
No 38
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.03 E-value=8.4e-06 Score=72.12 Aligned_cols=37 Identities=41% Similarity=0.291 Sum_probs=35.4
Q ss_pred CEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHh
Q psy15484 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224 (1233)
Q Consensus 1188 ~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L 1224 (1233)
+.|.|+|.|+|..+++|.|.|||+||+.||+.||+.|
T Consensus 31 ~~f~~~~~i~~~~~~~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 31 PRFICTVYIDGKEYGEGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp EEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEEECCEEEeEeccCCHHHHHHHHHHHHHHhC
Confidence 5899999999999999999999999999999999986
No 39
>PLN03202 protein argonaute; Provisional
Probab=97.90 E-value=1e-05 Score=105.44 Aligned_cols=84 Identities=14% Similarity=0.263 Sum_probs=68.3
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCC---------CCccCHHHHHHhhhCccccCC-CCceEEec
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT---------NTYQTFEEYYSLKYGLQIQNL-EQPLLDVD 367 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~---------~~~~Ty~eYy~~kygi~i~~~-~QPLL~v~ 367 (1233)
...++|..|.+.|+| ++|.|.+|.++.+|..+|+.+. +.++|++|||+++||+.|.++ ++||+.+
T Consensus 292 ~~~lkGl~V~t~~~~----k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~- 366 (900)
T PLN03202 292 KRMLKNLRVKVSPSN----QEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINV- 366 (900)
T ss_pred HHHhcCCEEEEecCC----ceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEc-
Confidence 356789999999987 7999999999999999996421 247899999999999999995 8998832
Q ss_pred ccccccccccccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccC
Q psy15484 368 HTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPF 419 (1233)
Q Consensus 368 ~~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~i 419 (1233)
|+ ....+|||||||.|.|.
T Consensus 367 -----------------g~----------------~~~~~ylP~ElC~i~~~ 385 (900)
T PLN03202 367 -----------------GK----------------PKRPTYFPIELCSLVSL 385 (900)
T ss_pred -----------------CC----------------CCCCeEEcceeeEccCC
Confidence 10 12357999999999985
No 40
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=97.00 E-value=0.0025 Score=56.24 Aligned_cols=64 Identities=22% Similarity=0.252 Sum_probs=45.8
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecCCC--ceeEEEEEEccCCCCCcccc-cCCCCCCHHHHHHHHHHHHHHHH
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKEDD--SIMFTCSIRLPINSPLKRSV-TGHKMPTKLLAWRIAAMEACRVL 79 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~--~~~~~c~l~LP~nSPir~~i-~G~p~~sk~lAK~sAAleAC~~L 79 (1233)
.+++|+.||.+.- ..|.|......+++ ...|+|++.+... .+ .|.- +||+.||+.||..||+.|
T Consensus 1 ~~~~L~e~~~~~~------~~~~~~~~~~~~~~~~~~~f~~~~~i~~~-----~~~~g~g-~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNK------FPPPYYYIEEEGPSHHRPRFICTVYIDGK-----EYGEGEG-SSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCT------SSEEEEEEEEESSSSSSEEEEEEEEETTE-----EEEEEEE-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC------CCCCEEEEEEeCCCCCCceEEEEEEECCE-----EEeEecc-CCHHHHHHHHHHHHHHhC
Confidence 4789999999974 44556544433332 2589999999441 13 3433 599999999999999987
No 41
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=96.77 E-value=0.0064 Score=60.25 Aligned_cols=106 Identities=22% Similarity=0.322 Sum_probs=68.1
Q ss_pred chHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcc
Q psy15484 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093 (1233)
Q Consensus 1014 yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~ 1093 (1233)
-=-|.|+||||+++.|-.|+...... .|+.|+..-.+.||.+.-|.+-..+ ..+| .+.-..+++-+...
T Consensus 15 ~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~L-------te~E~~I~KRgRNa- 83 (132)
T COG1939 15 GLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFL-------TEEEEEIVKRGRNA- 83 (132)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHh-------hHHHHHHHHHhccc-
Confidence 34689999999999999999876433 6999999999999999888775442 1121 11111222211100
Q ss_pred cchhhhhhhhccccCccccCCCCc-------chhchhhccccchhhcCCCCHHHHHHHHHHHH
Q psy15484 1094 FTLNQEYYLMEGECDEAEDIEVPK-------ALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149 (1233)
Q Consensus 1094 ~~~~~~~~~~~ee~~~~~~~~~pK-------vLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll 1149 (1233)
.....|| -.+--|||+||.+|+-... +....++...+
T Consensus 84 -----------------ks~T~~kn~dv~tYr~sTgfEAliGyLyL~~~~--eRL~ell~~~i 127 (132)
T COG1939 84 -----------------KSGTKPKNTDVETYRMSTGFEALIGYLYLTKQE--ERLEELLNKVI 127 (132)
T ss_pred -----------------ccCCCCCCCChHHHHHhhhHHHHHHHHHHcccH--HHHHHHHHHHH
Confidence 0012233 3678899999999998865 45555544433
No 42
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=96.68 E-value=0.006 Score=53.53 Aligned_cols=67 Identities=22% Similarity=0.174 Sum_probs=47.3
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVL 79 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~L 79 (1233)
+.++.|+.||.+. ....|.|.+....+ +....|+|++.+.. +....|.- +||+.||+.||..|+..|
T Consensus 1 ~p~~~L~e~~~~~-----~~~~~~y~~~~~~g~~~~~~f~~~v~i~~----~~~~~g~g-~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKR-----GKPLPEYELVEEEGPDHAPRFTVEVTVGG----KITGEGEG-SSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHc-----CCCCCeEEEeeeeCCCCCCeEEEEEEECC----EEEEEeec-CCHHHHHHHHHHHHHHhC
Confidence 3578999999985 23567787644322 22357999999965 12234433 599999999999999875
No 43
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=96.54 E-value=0.011 Score=54.81 Aligned_cols=72 Identities=24% Similarity=0.298 Sum_probs=52.5
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEee-cCCCceeEEEEEEccCC-CCCccc--ccC--CCCCCHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPIN-SPLKRS--VTG--HKMPTKLLAWRIAAMEAC 76 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~-~~~~~~~~~c~l~LP~n-SPir~~--i~G--~p~~sk~lAK~sAAleAC 76 (1233)
||+++|+-||++- --..|.|.+... +.++...|.|+|.+|.- .|+... +.| .++++|+.||.+||-.|-
T Consensus 2 ~a~~~L~elC~k~-----~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L 76 (80)
T PF14709_consen 2 SAVSLLNELCQKN-----KWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQAL 76 (80)
T ss_pred CHHHHHHHHHHhc-----CCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHH
Confidence 7999999999984 235789988632 22245689999999954 332221 344 899999999999998775
Q ss_pred HHH
Q psy15484 77 RVL 79 (1233)
Q Consensus 77 ~~L 79 (1233)
..|
T Consensus 77 ~~L 79 (80)
T PF14709_consen 77 QAL 79 (80)
T ss_pred Hhc
Confidence 443
No 44
>KOG3769|consensus
Probab=95.84 E-value=0.037 Score=62.14 Aligned_cols=143 Identities=20% Similarity=0.241 Sum_probs=108.7
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
-.+++-|--.|-.||.+.|+.||=++||...|--++.+-+-+++...|+.+|.-.|+..+++++.|.+. +
T Consensus 113 ~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~------~---- 182 (333)
T KOG3769|consen 113 QYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKV------G---- 182 (333)
T ss_pred CcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCc------h----
Confidence 358899999999999999999999999999999999999999999999999999999999999987631 0
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
+ ...+++.++++=||+|
T Consensus 183 -------------------------------e--------------------------------isq~ess~~aI~Al~~ 199 (333)
T KOG3769|consen 183 -------------------------------E--------------------------------ISQDESSRRAIGALLG 199 (333)
T ss_pred -------------------------------h--------------------------------hhHHHHHHHHHHHHHh
Confidence 0 0124688999999999
Q ss_pred HHHhcCChhHHHHHHHH--hcccccCCCC-CCCChhhhHHHHhhHHHHHHHcCCccCCHhHHHhh
Q psy15484 938 AYLIECGPRGALLFMSW--LGLKVIPPVT-NPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQA 999 (1233)
Q Consensus 938 A~~l~~G~~~a~~~l~w--lgi~~~~~~~-~p~~~~~~~~~~~~~~~le~~LgY~Fk~~~LL~~A 999 (1233)
+++...|.....+|+.. ++.+..+..- .+..| +..+..+-++.|.+=--+.|+.++
T Consensus 200 ~~~~ek~~~~v~dFI~~qi~~k~L~~~~m~ql~~P------~~~L~~lckr~~l~epe~Rll~es 258 (333)
T KOG3769|consen 200 SVGLEKGFNFVRDFINDQILSKDLDPREMWQLQWP------RRLLSRLCKRRGLKEPESRLLAES 258 (333)
T ss_pred cccHHHHHHHHHHHHHHHhhhhccchHhhccccch------HHHHHHHHHHcCCCCchhHHHHHh
Confidence 99999998888888642 2222221100 01111 123566777888776677777765
No 45
>KOG3732|consensus
Probab=95.79 E-value=0.016 Score=66.23 Aligned_cols=69 Identities=28% Similarity=0.230 Sum_probs=53.0
Q ss_pred CChHHHHHhhccc---cCcccCCc--cccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy15484 1162 KSPIRELLELEPE---NARFSKPE--KLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPAD 1231 (1233)
Q Consensus 1162 k~pl~eL~e~~~~---~~~f~~~~--~~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~~~ 1231 (1233)
|+|+..|+|.+.+ .+.|.... -..+.+.|++.|.|. +..++|-|+|||.||++||..+|..|+...+.+
T Consensus 38 KS~IS~l~E~~~r~~~~v~fevl~eeGp~H~~~fv~rvtvg-~~~a~GeG~sKK~AKh~AA~~~L~~lk~l~~l~ 111 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPVYEVLREEGPPHMPNFVFRVTVG-EITATGEGKSKKLAKHRAAEALLKELKKLPPLA 111 (339)
T ss_pred CChHHHHHHHHHHhCCCcceeeeeccCCccCCCeEEEEEEe-eeEEecCCCchhHHHHHHHHHHHHHHhcCCCcc
Confidence 8888888887654 22343322 124568899999985 778999999999999999999999999876543
No 46
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=95.58 E-value=0.042 Score=48.17 Aligned_cols=64 Identities=20% Similarity=0.177 Sum_probs=46.5
Q ss_pred HHHHHHHhhcCCCCCCCcccceEEEEee-cCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHH
Q psy15484 5 IFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVL 79 (1233)
Q Consensus 5 I~LL~rYCs~LPsD~ft~~~P~~~~~~~-~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~L 79 (1233)
++.|+.||++.- ..|.|.+... +.+....|+|++.+... + ...|. .+||+.||+.||..|+..|
T Consensus 2 ~~~L~e~~~~~~------~~~~y~~~~~~g~~~~~~f~~~v~i~~~--~--~~~g~-g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 2 KSLLQELAQKRG------LPPEYELVKEEGPDHAPRFTVTVKVGGE--Y--TGEGE-GSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred chHHHHHHHHCC------CCCEEEEEeeeCCCCCCcEEEEEEECCE--E--EEEec-cCCHHHHHHHHHHHHHHhc
Confidence 578999999762 2588887653 33234589999999542 1 12343 4899999999999999877
No 47
>KOG3732|consensus
Probab=94.48 E-value=0.07 Score=61.17 Aligned_cols=67 Identities=30% Similarity=0.339 Sum_probs=48.1
Q ss_pred CCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Q psy15484 1161 PKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~ 1229 (1233)
-.+|+.+|.|+++.. ++..|++. .....|++.|.|.+. +.+|.|.|||.||++||.+.|..|+-.++
T Consensus 141 ~~NPI~~L~e~~q~k-~~k~P~yelv~E~G~~~~rEFv~q~sv~~~-~~~GkG~sKKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 141 VLNPIGRLQELAQAK-KWKLPEYELVQESGVPHRREFVIQCSVENF-TEEGKGPSKKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred ccChHHHHHHHHHHh-CCCCCceEEEeccCCCccceEEEEEEecce-eeecCCchHHHHHHHHHHHHHHHhccCCC
Confidence 356777777776542 33334332 234578888988654 68999999999999999999999985443
No 48
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=94.45 E-value=0.21 Score=49.86 Aligned_cols=49 Identities=14% Similarity=0.112 Sum_probs=39.3
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHH
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~l 828 (1233)
.|.=-|.|+|||++.+.|-.|+-..+-. ..+.||..-.+.||-+.-+.+
T Consensus 13 ln~laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~i 61 (132)
T COG1939 13 LNGLALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALI 61 (132)
T ss_pred cCHHHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHH
Confidence 3567799999999999999998876543 678999999999987755443
No 49
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=93.39 E-value=0.13 Score=47.81 Aligned_cols=63 Identities=25% Similarity=0.182 Sum_probs=43.4
Q ss_pred CChHHHHHhhccccCcccCCcccc-------CCCEEEEEEEECCeEE-----EEEEe-----CCHHHHHHHHHHHHHHHh
Q psy15484 1162 KSPIRELLELEPENARFSKPEKLA-------DGRRVRVTVEVFGKGS-----YKGIG-----RNYCIAKCTAAKCALKHL 1224 (1233)
Q Consensus 1162 k~pl~eL~e~~~~~~~f~~~~~~~-------~~~~~~v~V~V~g~~~-----~~G~G-----~Skk~Ak~~AAk~AL~~L 1224 (1233)
|++++.|.++|.+ .+++.|.+.. +...|.+.|.|.+... ..-.+ .++++||..||+.||..|
T Consensus 1 k~a~~~L~elC~k-~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~L 79 (80)
T PF14709_consen 1 KSAVSLLNELCQK-NKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQAL 79 (80)
T ss_pred CCHHHHHHHHHHh-cCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhc
Confidence 4677778887765 4566665432 1236888888876544 12222 579999999999999988
Q ss_pred h
Q psy15484 1225 K 1225 (1233)
Q Consensus 1225 ~ 1225 (1233)
+
T Consensus 80 g 80 (80)
T PF14709_consen 80 G 80 (80)
T ss_pred C
Confidence 5
No 50
>KOG4334|consensus
Probab=92.63 E-value=0.082 Score=62.48 Aligned_cols=38 Identities=24% Similarity=0.031 Sum_probs=35.5
Q ss_pred CCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHh
Q psy15484 1187 GRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224 (1233)
Q Consensus 1187 ~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L 1224 (1233)
...|..+|.+++-.+|.|+|.|||.||..||+.+|.+|
T Consensus 404 stpysa~v~~d~~~yGsG~g~sKK~Ak~~AAR~tLeiL 441 (650)
T KOG4334|consen 404 STPYSAGVLPDLFPYGSGVGASKKTAKLVAARDTLEIL 441 (650)
T ss_pred CCcccccccccccccccccccchHHHHHHHHHHHHHHh
Confidence 45689999999999999999999999999999999988
No 51
>KOG2777|consensus
Probab=88.94 E-value=0.63 Score=57.09 Aligned_cols=41 Identities=32% Similarity=0.222 Sum_probs=35.6
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
...+|.+.|.|+|+..-.| |+|||+||+.||+.||+.|...
T Consensus 115 ~~~~F~~~~~vdg~~~~~~-~~sKk~ak~~aa~~al~~l~~~ 155 (542)
T KOG2777|consen 115 HAPKFVMSVVVDGRWFEGG-GRSKKEAKQEAAMAALQVLFKI 155 (542)
T ss_pred CCceEEEEEEECCEEccCC-CcchHHHHHHHHHHHHHHHHhc
Confidence 4678999999999876555 9999999999999999998654
No 52
>KOG1041|consensus
Probab=84.13 E-value=1.3 Score=58.59 Aligned_cols=67 Identities=12% Similarity=0.185 Sum_probs=53.6
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCC--CCccCHHHHHHhhhCccccCCCCceEEe
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRT--NTYQTFEEYYSLKYGLQIQNLEQPLLDV 366 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~--~~~~Ty~eYy~~kygi~i~~~~QPLL~v 366 (1233)
...++|.=|...|++ ..+.|.|..+.++-.-...|+... +...|-.+||+.+|++.+.+++=|+|.|
T Consensus 277 ~~~lkgL~v~~~h~~--~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v 345 (876)
T KOG1041|consen 277 KKALKGLKVYVTHGK--RKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVV 345 (876)
T ss_pred HHHhhCcEEEEeccc--CcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEee
Confidence 455777766666644 248899999998888888888644 4678999999999999999999999955
No 53
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=81.64 E-value=4.1 Score=43.80 Aligned_cols=68 Identities=25% Similarity=0.195 Sum_probs=45.9
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..+.|+.||++--... .+.+...+......|.|+|.+... .+ -.| .-.|||.|+|.||-.|+.+|-.
T Consensus 110 NpKS~LQE~~Qk~~~~~------y~~i~~~Gp~H~p~F~v~V~I~g~-~~---g~G-~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 110 NPCTVINEYCQITSRDW------SINITSSGPSHSPTFTASVIISGI-KF---KPA-IGSTKKEAKNNAAKLAMDKILN 177 (183)
T ss_pred ChhHHHHHHHHHhCCCe------EEEEEeeCCCCCceEEEEEEECCE-EE---EEe-eeCCHHHHHHHHHHHHHHHHHh
Confidence 45789999999743331 233333333345689999999762 11 123 3379999999999999999843
No 54
>KOG2777|consensus
Probab=72.85 E-value=8.5 Score=47.65 Aligned_cols=65 Identities=18% Similarity=0.182 Sum_probs=45.9
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEe-ecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISE-IKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~-~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+.++|||.|.+. |.|.... .+.+...+|+|.+.+=-. .+.|- .+||+.||+.||+.||..|..
T Consensus 91 npv~ll~e~~~~----------~~~~~~~~~~~~~~~~F~~~~~vdg~-----~~~~~-~~sKk~ak~~aa~~al~~l~~ 154 (542)
T KOG2777|consen 91 NPVSLLHELANG----------LFFDFVNESGPQHAPKFVMSVVVDGR-----WFEGG-GRSKKEAKQEAAMAALQVLFK 154 (542)
T ss_pred CchHHHHHHhcc----------cceeeeccCCCCCCceEEEEEEECCE-----EccCC-CcchHHHHHHHHHHHHHHHHh
Confidence 568999999982 2332222 223334578888887652 35566 799999999999999999986
Q ss_pred cC
Q psy15484 82 LK 83 (1233)
Q Consensus 82 ~G 83 (1233)
.-
T Consensus 155 ~~ 156 (542)
T KOG2777|consen 155 ID 156 (542)
T ss_pred cc
Confidence 43
No 55
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=63.77 E-value=22 Score=38.22 Aligned_cols=67 Identities=25% Similarity=0.368 Sum_probs=45.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEee-cCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~-~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+..+.|+.||++--. .. .|.+... +.+....|+++|++--. .+ ..-.| +|||.|+|.||-.|+..|-
T Consensus 109 DpKS~LQE~~Q~~~~-----~l-~Y~li~~~GpdH~~~Ftv~V~V~g~-~~-g~G~G---~SKKeAEQ~AAk~AL~~L~ 176 (183)
T PHA02701 109 NPVSAVNEFCMRTHR-----PL-EFCETRSGGHDHCPLFTCTIVVSGK-VV-ATASG---CSKKLARHAACADALTILI 176 (183)
T ss_pred CccHHHHHHHHhcCC-----CC-eEEEEEeECCCCCceEEEEEEECCE-EE-EEEEe---CCHHHHHHHHHHHHHHHHH
Confidence 456789999988421 22 4755543 33335689999999531 11 11245 7999999999999999883
No 56
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=60.76 E-value=24 Score=34.33 Aligned_cols=93 Identities=18% Similarity=0.333 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccc
Q psy15484 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095 (1233)
Q Consensus 1016 RLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~ 1095 (1233)
-|.-+||++++++++--|-+- -..+.| --|-|.+||..-..-||.+.+. |-
T Consensus 2 ~Lak~GDSLvNfl~SlALse~-lG~Ptg-------~rVPnaSLaiAl~~a~L~~~~~---PR------------------ 52 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEY-LGRPTG-------DRVPNASLAIALELAGLSHLLP---PR------------------ 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-HTS--------------HHHHHHHHHHTTGGGCS-----C------------------
T ss_pred cHHHHhHHHHHHHHHHHHHHH-hCCCCC-------CCCCChHHHHHHHHHhhhhhCc---cc------------------
Confidence 367899999999988777542 122222 2288888988777778877664 10
Q ss_pred hhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155 (1233)
Q Consensus 1096 ~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~~ 1155 (1233)
.--..-||+.||+|+=-|+..-+..+.+-++++.-+.+.+..
T Consensus 53 ------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~~nl~~dv~~ 94 (120)
T PF11469_consen 53 ------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILKANLTEDVLH 94 (120)
T ss_dssp ------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHHCT--GGGG-
T ss_pred ------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCchhhcc
Confidence 001356999999999999999887777777776655544443
No 57
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=51.78 E-value=92 Score=30.44 Aligned_cols=46 Identities=22% Similarity=0.301 Sum_probs=30.9
Q ss_pred hhhhhhHHHHHHHHHHH--HHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchh
Q psy15484 784 LETIGDSFLKYAITIFL--YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839 (1233)
Q Consensus 784 LE~LGDsfLK~~vs~~L--f~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~ 839 (1233)
|.-+|||...|+.|.-| |..+|+- .-|-|..|...-...||.+.+.
T Consensus 3 Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~ 50 (120)
T PF11469_consen 3 LAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLP 50 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS-
T ss_pred HHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCc
Confidence 56799999999999877 5677753 2578888888777777766653
No 58
>PF08383 Maf_N: Maf N-terminal region; InterPro: IPR013592 This region is found in various leucine zipper transcription factors of the Maf family. These are implicated in the regulation of insulin gene expression [], in erythroid differentiation [], and in differentiation of the neuroretina [].
Probab=39.66 E-value=15 Score=28.78 Aligned_cols=12 Identities=58% Similarity=0.772 Sum_probs=10.3
Q ss_pred hhHHHHHHHHHH
Q psy15484 927 SIADCVEALIGA 938 (1233)
Q Consensus 927 ~iADvvEALIGA 938 (1233)
|-.|+||||||+
T Consensus 24 tpEDAvEaLi~~ 35 (35)
T PF08383_consen 24 TPEDAVEALIGN 35 (35)
T ss_pred CHHHHHHHHhcC
Confidence 558999999984
No 59
>PF14954 LIX1: Limb expression 1
Probab=36.01 E-value=53 Score=36.08 Aligned_cols=34 Identities=35% Similarity=0.402 Sum_probs=28.5
Q ss_pred eEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHH
Q psy15484 39 MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEA 75 (1233)
Q Consensus 39 ~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleA 75 (1233)
-|+|-|.||-.|.+- .+ ..+++|.-|||+||=-|
T Consensus 58 pyVcyVTLPGGSCFG-nf--q~C~tkAEARR~AAKiA 91 (252)
T PF14954_consen 58 PYVCYVTLPGGSCFG-NF--QNCPTKAEARRSAAKIA 91 (252)
T ss_pred CeEEEEeCCCCCccC-cc--ccCCcHHHHHhhhHHHH
Confidence 699999999999984 35 45789999999999544
No 60
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=33.14 E-value=87 Score=29.81 Aligned_cols=42 Identities=33% Similarity=0.176 Sum_probs=26.5
Q ss_pred CCEEEEEEEECCeE---EEEE-EeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1187 GRRVRVTVEVFGKG---SYKG-IGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1187 ~~~~~v~V~V~g~~---~~~G-~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
...|.|+|..-... ..+| .-.|++.||+.||-.|.+.|-+..
T Consensus 30 ~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 30 GSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp -G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred CCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcC
Confidence 34688888775321 1333 457999999999999999997654
No 61
>PRK02287 hypothetical protein; Provisional
Probab=29.81 E-value=49 Score=35.41 Aligned_cols=28 Identities=29% Similarity=0.107 Sum_probs=24.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhc
Q psy15484 929 ADCVEALIGAYLIECGPRGALLFMSWLG 956 (1233)
Q Consensus 929 ADvvEALIGA~~l~~G~~~a~~~l~wlg 956 (1233)
=.|||||.+|.|+.|..+.|..+|..|.
T Consensus 107 Ls~vEAlAaaLyI~G~~~~A~~ll~~F~ 134 (171)
T PRK02287 107 LSSVEALAAALYILGFKEEAEKILSKFK 134 (171)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhhCC
Confidence 3589999999999999999999987654
No 62
>PF00333 Ribosomal_S5: Ribosomal protein S5, N-terminal domain; InterPro: IPR013810 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S5 is one of the proteins from the small ribosomal subunit, and is a protein of 166 to 254 amino-acid residues. In Escherichia coli, S5 is known to be important in the assembly and function of the 30S ribosomal subunit. Mutations in S5 have been shown to increase translational error frequencies. It belongs to a family of ribosomal proteins which, on the basis of sequence similarities [, ], groups bacterial, cyanelle, red algal chloroplast, archaeal and fungal mitochondrial S5; mammalian, Caenorhabditis elegans, Drosophila and plant S2; and yeast S4 (SUP44). This entry represents the N-terminal domain of ribosomal protein S5, which has an alpha-beta(3)-alpha structure that folds into two layers, alpha/beta.; GO: 0003723 RNA binding, 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2ZKQ_e 2XZN_E 2XZM_E 3O30_B 1S1H_E 3IZB_E 3U5C_C 3U5G_C 3O2Z_B 3BBN_E ....
Probab=27.76 E-value=1.1e+02 Score=27.67 Aligned_cols=37 Identities=27% Similarity=0.073 Sum_probs=28.3
Q ss_pred EEEEEEEECCe----EEEEEEeCCHHHHHHHHHHHHHHHhh
Q psy15484 1189 RVRVTVEVFGK----GSYKGIGRNYCIAKCTAAKCALKHLK 1225 (1233)
Q Consensus 1189 ~~~v~V~V~g~----~~~~G~G~Skk~Ak~~AAk~AL~~L~ 1225 (1233)
.|.+.|.+++. ++|.|.+.....|-++|-+.|.+.|-
T Consensus 23 ~~~alvvvGn~~G~vG~G~gKa~~~~~Ai~kA~~~A~knl~ 63 (67)
T PF00333_consen 23 SFRALVVVGNGNGLVGFGVGKAKEVPDAIRKAKRKAKKNLI 63 (67)
T ss_dssp EEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHHHCSEE
T ss_pred EEEEEEEEecCCCcEecCcccchhHHHHHHHHHHHHHhCCE
Confidence 46667777542 35777888899999999999988764
No 63
>COG5546 Small integral membrane protein [Function unknown]
Probab=24.81 E-value=1.1e+02 Score=28.25 Aligned_cols=23 Identities=30% Similarity=0.707 Sum_probs=19.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHhccccc
Q psy15484 933 EALIGAYLIECGPRGALLFMSWLGLKVI 960 (1233)
Q Consensus 933 EALIGA~~l~~G~~~a~~~l~wlgi~~~ 960 (1233)
=|++||+++- |+.++.||||.+.
T Consensus 15 vail~~ifll-----AQqll~~fGI~~~ 37 (80)
T COG5546 15 VAILGAIFLL-----AQQLLGWFGIKLP 37 (80)
T ss_pred HHHHHHHHHH-----HHHHHHHeeeecc
Confidence 3799999875 7889999999864
No 64
>PF14954 LIX1: Limb expression 1
Probab=24.61 E-value=1.1e+02 Score=33.66 Aligned_cols=35 Identities=26% Similarity=0.148 Sum_probs=27.3
Q ss_pred CCCEEEEEEEECCeEEEEEEe-----CCHHHHHHHHHHHHHHH
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIG-----RNYCIAKCTAAKCALKH 1223 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G-----~Skk~Ak~~AAk~AL~~ 1223 (1233)
.++.|.|-|.+-| |..+| .++.+|++.||+.||..
T Consensus 55 ~~ppyVcyVTLPG---GSCFGnfq~C~tkAEARR~AAKiALmN 94 (252)
T PF14954_consen 55 PSPPYVCYVTLPG---GSCFGNFQNCPTKAEARRSAAKIALMN 94 (252)
T ss_pred CCCCeEEEEeCCC---CCccCccccCCcHHHHHhhhHHHHHHH
Confidence 3567888888776 45555 48999999999999954
No 65
>PF04034 DUF367: Domain of unknown function (DUF367); InterPro: IPR007177 This domain is found in a family of proteins of unknown function. It appears to be found in eukaryotes and archaebacteria, and occurs associated with a potential metal-binding region in RNase L inhibitor, RLI (IPR007209 from INTERPRO).
Probab=21.04 E-value=87 Score=31.94 Aligned_cols=28 Identities=32% Similarity=0.243 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHhc
Q psy15484 929 ADCVEALIGAYLIECGPRGALLFMSWLG 956 (1233)
Q Consensus 929 ADvvEALIGA~~l~~G~~~a~~~l~wlg 956 (1233)
=.|+|||.+|.|+.|=.+.|..+|..|+
T Consensus 66 LscvEAlAAaLyI~G~~~~A~~lL~~Fk 93 (127)
T PF04034_consen 66 LSCVEALAAALYILGFKEQAEELLSKFK 93 (127)
T ss_pred ccHHHHHHHHHHHcCCHHHHHHHHhcCC
Confidence 4699999999999999999999887654
Done!