Query psy15484
Match_columns 1233
No_of_seqs 472 out of 2388
Neff 6.4
Searched_HMMs 29240
Date Fri Aug 16 22:19:31 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15484.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/15484hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 100.0 2.3E-85 7.7E-90 817.4 28.6 599 176-1154 18-753 (756)
2 3c4b_A Endoribonuclease dicer; 100.0 6E-46 2.1E-50 415.6 24.1 254 973-1227 9-264 (265)
3 2nug_A Ribonuclease III, RNAse 100.0 1.5E-39 5.2E-44 354.3 20.1 208 978-1226 3-219 (221)
4 3n3w_A Ribonuclease III; nucle 100.0 1.6E-40 5.4E-45 367.3 10.2 215 977-1226 26-247 (248)
5 1o0w_A Ribonuclease III, RNAse 100.0 8.3E-39 2.8E-43 354.9 15.1 218 977-1227 19-250 (252)
6 2a11_A Ribonuclease III, RNAse 100.0 1.1E-38 3.9E-43 352.0 7.5 218 978-1228 6-233 (242)
7 3rv0_A K. polysporus DCR1; RNA 100.0 6.2E-38 2.1E-42 359.4 8.1 253 925-1228 48-322 (341)
8 3o2r_A Ribonuclease III; struc 100.0 5.1E-32 1.8E-36 282.2 9.2 144 977-1155 26-169 (170)
9 3rv1_A K. polysporus DCR1; RNA 100.0 5.5E-31 1.9E-35 288.1 9.4 147 981-1157 87-244 (246)
10 2kou_A Dicer-like protein 4; A 100.0 1.1E-28 3.8E-33 235.1 9.6 93 1-96 3-95 (102)
11 2qvw_A GLP_546_48378_50642; di 99.9 1.1E-24 3.9E-29 272.1 2.2 169 996-1228 319-499 (756)
12 3o2r_A Ribonuclease III; struc 99.8 3.8E-20 1.3E-24 192.8 8.2 105 779-955 58-162 (170)
13 3rv1_A K. polysporus DCR1; RNA 99.8 5.3E-19 1.8E-23 193.5 10.0 107 778-955 126-235 (246)
14 3n3w_A Ribonuclease III; nucle 99.7 9.2E-19 3.1E-23 193.4 8.5 105 779-955 58-162 (248)
15 3c4b_A Endoribonuclease dicer; 99.7 3E-18 1E-22 191.5 9.7 90 726-839 17-108 (265)
16 3o7v_X PIWI-like protein 1; PI 99.7 1E-18 3.6E-23 172.2 5.1 97 298-423 25-121 (124)
17 2a11_A Ribonuclease III, RNAse 99.7 7.9E-18 2.7E-22 185.6 8.0 105 779-955 40-147 (242)
18 2nug_A Ribonuclease III, RNAse 99.7 1.3E-17 4.5E-22 181.4 9.4 99 779-955 34-134 (221)
19 3rv0_A K. polysporus DCR1; RNA 99.7 1.2E-17 4E-22 191.7 8.6 107 778-955 126-235 (341)
20 1o0w_A Ribonuclease III, RNAse 99.7 1.1E-17 3.6E-22 185.6 7.2 105 779-955 60-164 (252)
21 1u61_A Hypothetical protein; s 99.7 3.7E-17 1.3E-21 163.4 10.0 107 1011-1150 9-127 (138)
22 3qir_A PIWI-like protein 2; st 99.6 4.2E-17 1.4E-21 165.7 3.3 98 298-423 25-122 (148)
23 2xfm_A MIWI, PIWI-like protein 99.6 3E-16 1E-20 160.4 5.1 99 298-426 26-125 (150)
24 1u61_A Hypothetical protein; s 99.6 3.5E-15 1.2E-19 149.2 10.7 57 778-835 9-69 (138)
25 2gsl_A Hypothetical protein; a 99.6 1.4E-15 4.9E-20 151.6 7.7 113 1011-1151 12-128 (137)
26 2gsl_A Hypothetical protein; a 99.5 8.6E-14 3E-18 138.8 10.4 115 778-956 12-126 (137)
27 1x48_A Interferon-induced, dou 98.4 2.5E-07 8.7E-12 85.8 7.0 72 1160-1231 7-79 (88)
28 3llh_A RISC-loading complex su 98.4 1.7E-07 6E-12 87.3 5.6 41 1186-1227 43-83 (90)
29 2l33_A Interleukin enhancer-bi 98.4 4.8E-07 1.7E-11 84.3 8.4 69 1160-1230 15-85 (91)
30 3p1x_A Interleukin enhancer-bi 98.4 6.6E-07 2.3E-11 80.5 8.5 68 1159-1228 4-73 (75)
31 3adl_A RISC-loading complex su 98.3 1E-06 3.6E-11 81.7 8.7 43 1186-1229 45-87 (88)
32 2khx_A Ribonuclease 3; drosha, 98.3 4E-07 1.4E-11 83.9 5.7 69 1160-1228 2-78 (85)
33 1vyn_A Argonaute2; nucleic aci 98.3 3.3E-07 1.1E-11 92.8 5.2 85 298-418 34-120 (143)
34 1di2_A XLRBPA, double stranded 98.3 8.9E-07 3E-11 78.3 7.0 39 1186-1225 30-68 (69)
35 1t4n_A Ribonuclease III; DSRBD 98.3 3.8E-07 1.3E-11 85.1 4.3 66 1161-1226 8-75 (94)
36 2dix_A Interferon-inducible do 98.3 5E-07 1.7E-11 83.1 5.0 41 1186-1227 37-77 (84)
37 1x47_A DGCR8 protein; structur 98.3 1E-06 3.4E-11 83.4 6.4 66 1161-1227 15-85 (98)
38 2cpn_A TAR RNA-binding protein 98.2 2E-06 6.7E-11 80.0 8.1 65 1162-1228 16-87 (89)
39 2dmy_A Spermatid perinuclear R 98.2 2.6E-06 9E-11 80.4 8.7 69 1159-1229 16-86 (97)
40 3adj_A F21M12.9 protein; HYL1, 98.2 1.2E-06 4E-11 79.1 5.6 62 1161-1226 6-74 (76)
41 2b7t_A Double-stranded RNA-spe 98.2 1.4E-06 4.8E-11 77.9 5.9 66 1159-1226 4-71 (73)
42 1x49_A Interferon-induced, dou 98.2 7.3E-07 2.5E-11 84.2 4.1 43 1186-1228 43-85 (97)
43 3adg_A F21M12.9 protein; HYL1, 98.2 2E-06 6.7E-11 77.0 6.6 67 1160-1226 4-73 (73)
44 1whq_A RNA helicase A; double- 98.2 1.1E-06 3.8E-11 83.2 5.2 67 1160-1227 7-76 (99)
45 3mj0_A Protein argonaute-2; ar 98.2 6.5E-07 2.2E-11 88.3 3.3 67 298-366 32-100 (124)
46 1uhz_A Staufen (RNA binding pr 98.2 3.6E-06 1.2E-10 78.2 8.1 40 1186-1226 36-75 (89)
47 1t4o_A Ribonuclease III; RNT1P 98.1 1.1E-06 3.7E-11 84.9 4.2 63 1160-1227 9-78 (117)
48 1ekz_A DSRBDIII, maternal effe 98.1 4.4E-07 1.5E-11 81.8 1.3 40 1186-1226 36-75 (76)
49 1whn_A Hypothetical protein ri 98.1 2.3E-06 7.8E-11 84.7 5.9 67 1160-1227 27-95 (128)
50 2l2n_A Hyponastic leave 1; DSR 98.1 3.8E-06 1.3E-10 80.2 6.8 70 1159-1228 17-89 (103)
51 2b7v_A Double-stranded RNA-spe 98.1 6.1E-06 2.1E-10 73.3 7.1 65 1161-1227 3-69 (71)
52 2ljh_A Double-stranded RNA-spe 98.1 9.3E-06 3.2E-10 78.6 8.6 67 1161-1229 36-104 (114)
53 1uil_A Double-stranded RNA-bin 97.9 7.3E-06 2.5E-10 79.5 5.5 66 1161-1227 28-100 (113)
54 4f3t_A Protein argonaute-2; hy 97.7 2.2E-05 7.6E-10 100.6 6.6 90 299-423 262-362 (861)
55 2yt4_A Protein DGCR8; DSRBD, R 97.6 6.2E-05 2.1E-09 82.1 6.7 66 1161-1227 21-91 (232)
56 1qu6_A Protein kinase PKR; dsR 97.5 2.2E-05 7.7E-10 82.3 2.2 42 1186-1227 42-83 (179)
57 2l3j_A Double-stranded RNA-spe 97.4 0.00014 4.7E-09 79.6 6.5 67 1159-1227 4-72 (236)
58 1u04_A Argonaute, hypothetical 97.4 5E-06 1.7E-10 104.2 -6.3 77 317-423 196-278 (771)
59 1qu6_A Protein kinase PKR; dsR 97.0 0.00041 1.4E-08 72.6 5.0 43 1186-1228 132-174 (179)
60 2l3j_A Double-stranded RNA-spe 96.9 0.0015 5.1E-08 71.4 7.6 41 1186-1227 186-226 (236)
61 1uil_A Double-stranded RNA-bin 96.4 0.0075 2.6E-07 58.4 8.3 79 3-88 27-106 (113)
62 1whq_A RNA helicase A; double- 96.3 0.018 6E-07 54.4 9.7 80 3-92 7-86 (99)
63 3adg_A F21M12.9 protein; HYL1, 96.1 0.018 6.3E-07 51.0 8.5 69 3-80 4-72 (73)
64 2b7v_A Double-stranded RNA-spe 96.0 0.02 6.7E-07 50.6 7.9 65 2-82 4-69 (71)
65 2l2n_A Hyponastic leave 1; DSR 95.8 0.022 7.7E-07 54.1 8.1 76 4-88 19-94 (103)
66 2yt4_A Protein DGCR8; DSRBD, R 95.6 0.013 4.3E-07 63.9 6.4 38 1187-1227 162-199 (232)
67 1di2_A XLRBPA, double stranded 95.6 0.024 8.4E-07 49.6 6.9 66 4-80 2-68 (69)
68 3adj_A F21M12.9 protein; HYL1, 95.6 0.052 1.8E-06 48.6 9.1 68 3-80 5-73 (76)
69 2dix_A Interferon-inducible do 95.2 0.055 1.9E-06 49.4 8.0 69 3-83 9-78 (84)
70 3adl_A RISC-loading complex su 95.1 0.058 2E-06 49.7 7.9 68 3-81 16-84 (88)
71 3llh_A RISC-loading complex su 94.9 0.04 1.4E-06 51.0 6.4 71 3-85 15-86 (90)
72 2cpn_A TAR RNA-binding protein 94.7 0.065 2.2E-06 49.5 7.2 67 3-80 17-84 (89)
73 2b7t_A Double-stranded RNA-spe 94.6 0.088 3E-06 46.6 7.7 66 3-81 5-71 (73)
74 2ljh_A Double-stranded RNA-spe 94.6 0.058 2E-06 52.1 6.9 67 3-85 38-105 (114)
75 1uhz_A Staufen (RNA binding pr 94.5 0.097 3.3E-06 48.3 8.0 67 3-80 7-74 (89)
76 2khx_A Ribonuclease 3; drosha, 94.4 0.043 1.5E-06 50.2 5.3 71 4-79 3-74 (85)
77 1x47_A DGCR8 protein; structur 94.0 0.089 3E-06 49.5 6.6 67 3-80 17-83 (98)
78 3p1x_A Interleukin enhancer-bi 94.0 0.12 4.1E-06 46.1 7.2 63 3-81 8-71 (75)
79 1x49_A Interferon-induced, dou 93.8 0.2 6.9E-06 46.9 8.7 68 2-80 14-82 (97)
80 1ekz_A DSRBDIII, maternal effe 93.6 0.026 8.8E-07 50.5 2.0 67 3-81 8-75 (76)
81 2dmy_A Spermatid perinuclear R 92.6 0.17 5.9E-06 47.4 6.2 64 3-79 17-81 (97)
82 3ho1_A Argonaute; argonaute, p 92.5 0.015 5.3E-07 71.9 -1.5 162 177-364 60-241 (685)
83 1whn_A Hypothetical protein ri 92.4 0.23 8E-06 48.9 7.1 67 3-80 27-93 (128)
84 4f1n_A Kpago; argonaute, RNAI, 92.2 0.13 4.3E-06 66.9 6.2 66 300-366 355-446 (1046)
85 2l33_A Interleukin enhancer-bi 91.8 0.24 8.2E-06 45.9 6.0 64 4-80 16-80 (91)
86 1r6z_P Chimera of maltose-bind 90.8 0.089 3.1E-06 63.3 2.7 82 300-418 416-500 (509)
87 1x48_A Interferon-induced, dou 90.2 0.73 2.5E-05 42.3 7.6 67 3-81 7-74 (88)
88 1t4n_A Ribonuclease III; DSRBD 76.2 4 0.00014 37.9 5.9 65 6-80 10-74 (94)
89 1yvu_A Hypothetical protein AQ 75.1 0.094 3.2E-06 65.7 -7.1 43 308-364 185-230 (706)
90 2db2_A KIAA0890 protein; DSRM 74.1 4 0.00014 38.7 5.2 38 1190-1227 53-90 (119)
91 1t4o_A Ribonuclease III; RNT1P 70.5 6.9 0.00024 37.8 6.2 66 6-81 12-77 (117)
92 3htx_A HEN1; HEN1, small RNA m 66.2 5.7 0.00019 50.5 5.9 73 1159-1231 14-100 (950)
93 1ztd_A Hypothetical protein PF 60.5 12 0.00041 35.3 5.4 91 1013-1151 11-101 (133)
94 3htx_A HEN1; HEN1, small RNA m 59.0 9.4 0.00032 48.6 6.0 65 23-95 29-106 (950)
95 2db2_A KIAA0890 protein; DSRM 58.5 12 0.00043 35.4 5.2 51 40-93 51-101 (119)
96 2ykg_A Probable ATP-dependent 41.0 0.88 3E-05 56.6 -7.4 60 7-68 609-681 (696)
97 2kou_A Dicer-like protein 4; A 38.6 42 0.0015 31.4 5.6 40 1187-1228 38-82 (102)
98 1ztd_A Hypothetical protein PF 35.8 1.7E+02 0.0059 27.6 9.0 47 782-838 13-61 (133)
99 2l6m_A Protein dicer; DSRBD, h 20.3 2.4E+02 0.0081 26.2 6.8 40 1188-1227 66-105 (121)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=100.00 E-value=2.3e-85 Score=817.40 Aligned_cols=599 Identities=19% Similarity=0.228 Sum_probs=420.0
Q ss_pred CCceeEEecCCCCCCCCcceeecCcEEEEEEE-EcCcceecCHHHHHHHHHHHHHHHHHHhh-----ccc--ccee----
Q psy15484 176 PQGLAILTTKYIPKVCSFPIFTRCGEVEVSIE-LIDKNVVLSEENLSNTLIFMDYLFTKVLK-----LKK--YLML---- 243 (1233)
Q Consensus 176 ~~~fglLt~k~LP~ip~FpLf~~~g~~~V~l~-~~~~~i~lt~eql~~l~~Fh~~lF~dVl~-----l~k--~~~~---- 243 (1233)
+..+.||++++||.+|+|+||+++|.+.|++. +++..+.|+++|++.+++||.+||++|++ ++| ..+.
T Consensus 18 ~~~~~~l~~~~l~~~~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~~~~~ 97 (756)
T 2qvw_A 18 PSHWLLLLDTHLGTLPGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPHNEY 97 (756)
T ss_dssp EEEEEEEESSCCCSCCCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCCGGGS
T ss_pred cceeeeeecCCCCCCCCceeecCCCceeEEEEeecCCccccCHHHHHHHHHHHHHHHHHHhcccchhhhhcccccccccc
Confidence 35689999999999999999999999999999 89987799999999999999999999988 233 2222
Q ss_pred ----cCCCCCCC-cEEEeeecCCCCCceechhhhhhhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCCeE
Q psy15484 244 ----FDPNCSEN-SYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTY 318 (1233)
Q Consensus 244 ----fd~~~~~~-~YllvPl~~~~~~~~IDW~~v~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~~~ 318 (1233)
|.++.+.. .|||||+... ...|||+.|......+...+..+ ...+.+.+..++++|+||+|.||| .++
T Consensus 98 ~~~~~~~~~~~~~~Yll~Pl~~~--~~~iDw~~v~~s~~~~~~~~~~~--~~~~d~~~~~~~l~g~vV~t~ynn---~r~ 170 (756)
T 2qvw_A 98 TFPRFISNPPQFATLAFLPLLSP--TSPLDLRALMVTAQLMCDAKRLS--DEYTDYSTLSASLHGRMVATPEIS---WSL 170 (756)
T ss_dssp SSTTCCCCCSCCCCEEEEEESST--TCCCCSHHHHHHHHHHHTCCCGG--GC------CTTTSTTCEEEETTTT---TEE
T ss_pred ccccccCCCcccceEEEEeCCCC--CCceehhhhhhhhhhccccCCCc--cccccchhhHHHhCCCEEecCCCC---ceE
Confidence 34555565 8999999742 34499999965322100001000 112334567889999999999976 378
Q ss_pred EEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEecccccccccccccccccccccccCCcHHHHHh
Q psy15484 319 FYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRRE 398 (1233)
Q Consensus 319 Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~~r~~~~~g~~~~~~s~~~~~~ 398 (1233)
|+|++|++|+||.|+||.+. .+.||+|||+++||++|.+.+||||.++++. |+++++...++ .
T Consensus 171 Y~i~~id~d~~P~S~F~~~~-~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~---~~~~~r~~~~~-------------~ 233 (756)
T 2qvw_A 171 YVVLGIDSTQTSLSYFTRAN-ESITYMRYYATAHNIHLRAADLPLVAAVRLD---DLKDHQIPAPG-------------S 233 (756)
T ss_dssp EEEEEEEEEEETTSEEEETT-EEEEHHHHHHHTTCCCCSCTTSEEEEEEETT---TTTTCCCCSTT-------------C
T ss_pred EEEEEecCCCCCCCcCCCCC-CCCCHHHHHHHHcCcccccCCCCeEEEEecc---ccccccccccc-------------c
Confidence 88999999999999999753 7899999999999999999999999999985 44544432111 0
Q ss_pred hhhcCCccEEEcccccccccCcHHHHH--HHHhhhHHHHHHHHHHHHHH-HHHHHHhhhcCCcccccccCCCCCCccchh
Q psy15484 399 IRESLGKKQLLVPELCLIHPFPASLWR--KSVSLPSILYRLNALLLADE-IRTAVASEIGLGKVILDEKVEWPPFNFGWK 475 (1233)
Q Consensus 399 ~~~~~~~~~~LvPELC~i~~ipas~w~--~a~~LPSIl~Ri~~lLlA~e-lr~~i~~~~~lg~~~~~~~~~~~~l~~~~~ 475 (1233)
..+..+..++||||||.++|+|+++|+ +++||||||||||+||+|.+ |+. .||+. +|
T Consensus 234 ~~~~~~~~v~L~PELC~vt~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~-----------------~~p~~--~~- 293 (756)
T 2qvw_A 234 WDDLAPKLRFLPPELCLLLPDEFDLIRVQALQFLPEIAKHICDIQNTICALDK-----------------SFPDC--GR- 293 (756)
T ss_dssp -CCSCSSCEEECTTTCEECCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG-----------------GSCCC--SC-
T ss_pred cccCCccceeeCHHHheeecCchhHHHHHHHHHhHHHHHHHHHHHHHHHHHHh-----------------cCCcc--cc-
Confidence 112235579999999999999999999 99999999999999999987 421 01100 00
Q ss_pred hhhhhhccCCCccccccccccccccCCcccccccchhhhhchhhhhhccccccccCcCCCccchhhhhhhhccccccccc
Q psy15484 476 MKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKSDENKTE 555 (1233)
Q Consensus 476 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 555 (1233)
T Consensus 294 -------------------------------------------------------------------------------- 293 (756)
T 2qvw_A 294 -------------------------------------------------------------------------------- 293 (756)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCCCCCceeccccccccccccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccccchhhhhHHHhhccccchhhhhcch
Q psy15484 556 SQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGE 635 (1233)
Q Consensus 556 ~~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~d~~~~~~~~~~~~~~~~~~~~ea~~~~~ 635 (1233)
| ...++||||+..
T Consensus 294 ---------i----------------------------------------------------------~~~~leAlT~~~ 306 (756)
T 2qvw_A 294 ---------I----------------------------------------------------------GGERYFAITAGL 306 (756)
T ss_dssp ---------C----------------------------------------------------------HHHHHHHHHHHH
T ss_pred ---------c----------------------------------------------------------CHHHHHHHhhhh
Confidence 0 002345555321
Q ss_pred hhhhhhhhhhcccccchhhhhhccccchhhHHHHhhhchhhhhhhhhhhhhccccccccccCCccccccccccCCCCCCC
Q psy15484 636 EESALKIQDWIESNFFWEEIDVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSK 715 (1233)
Q Consensus 636 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 715 (1233)
-. + +++ ...+ ..+. . +.
T Consensus 307 ~~-------------------------------------~--~g~----~~~~-----~~~~-------~---Al----- 323 (756)
T 2qvw_A 307 RL-------------------------------------D--QGR----GRGL-----AGWR-------T---PF----- 323 (756)
T ss_dssp BC-------------------------------------S--CCB----TTBS-----BTTE-------E---EC-----
T ss_pred hh-------------------------------------h--hcc----ccch-----hhhh-------h---hc-----
Confidence 00 0 000 0000 0000 0 00
Q ss_pred cchhHHHHHHhhhccccCCcccccccCCCCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHH
Q psy15484 716 NTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYA 795 (1233)
Q Consensus 716 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~ 795 (1233)
.+ ++ .....|||||||||||||+++
T Consensus 324 ----------------------------Th-------------------~s--------~~~~~nnERLEfLGDavL~~~ 348 (756)
T 2qvw_A 324 ----------------------------GP-------------------FG--------VSHTDVFQRLELLGDAVLGFI 348 (756)
T ss_dssp ----------------------------BG-------------------GG--------BCHHHHHHHHHHHHHHHHHHH
T ss_pred ----------------------------cc-------------------cc--------ccCCCCcHHHHHHHHHHHHHH
Confidence 00 00 011358999999999999999
Q ss_pred HHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchhhhHHHHHhcCCCCcccc
Q psy15484 796 ITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWN 875 (1233)
Q Consensus 796 vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~~~~~~~~~~~~~~~~~~ 875 (1233)
||.|||.+||+.+||+||.+|+.+|||.+|+++|+++||++||+.++++. ..|.. ....+|..+ +.- |-
T Consensus 349 vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~~~~e~----~~~~i-laD~~EAli-GAi-----yl 417 (756)
T 2qvw_A 349 VTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEFSNNLV----AKSKT-WADMYEEIV-GSI-----FT 417 (756)
T ss_dssp HHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBCCSCC------CCCC-HHHHHHHHH-HHH-----HH
T ss_pred HHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhccCCCCC----CcccH-HHhHHHHHh-Ccc-----cc
Confidence 99999999999999999999999999999999999999999999888763 11111 111122221 110 00
Q ss_pred ccCCCCcccCChhHHHHHhhhccccccccccccccccccc--------cccccccCCCchhHHHHHHHHHH-----HHhc
Q psy15484 876 CLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPY--------NLVTQHSIPDKSIADCVEALIGA-----YLIE 942 (1233)
Q Consensus 876 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y--------~~~~~~~l~dK~iADvvEALIGA-----~~l~ 942 (1233)
. |. . -+....+...-- ......... ...-++++..|.+||++||++|+ |++.
T Consensus 418 D---~~--G--~~~a~~~v~~~~--------~~~~~~~~~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~ 482 (756)
T 2qvw_A 418 G---PN--G--IYGCEEFLAKTL--------MSPEHSKTVGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVF 482 (756)
T ss_dssp S---TT--H--HHHHHHHHHHHH--------BCGGGSCC---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCB
T ss_pred c---cc--C--hHHHHHHHHHHH--------HhhhhcccccccccCchHHHHHHHHhccchhhhhhhhhhHHhhhccccc
Confidence 0 00 0 000111111000 000001110 01123456678889999999998 6788
Q ss_pred CChhHHHHH------------HHHhcccccCCC----CCC--------------------------------------C-
Q psy15484 943 CGPRGALLF------------MSWLGLKVIPPV----TNP--------------------------------------E- 967 (1233)
Q Consensus 943 ~G~~~a~~~------------l~wlgi~~~~~~----~~p--------------------------------------~- 967 (1233)
||.++|..+ ++|+|+.+.+.. ..| +
T Consensus 483 ~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~ 562 (756)
T 2qvw_A 483 CSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSGPGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPT 562 (756)
T ss_dssp SSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSCSSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCE
T ss_pred hhhHHHHHHHHhhcccchHhHHhhcCCccccccccccccccccchhhhHHHHhhcCceeccccccccccccccccccccC
Confidence 888876554 478775532100 000 0
Q ss_pred ------------Chhhh--------HHH-HhhHHHHHHHcCCccCC--------------------------HhHHHhhc
Q psy15484 968 ------------SKHLS--------DVL-LDGFDKFEESINYRFKD--------------------------KSYLLQAM 1000 (1233)
Q Consensus 968 ------------~~~~~--------~~~-~~~~~~le~~LgY~Fk~--------------------------~~LL~~Al 1000 (1233)
.+.+. ..+ ...+..+|++|||+|+| +.||.+||
T Consensus 563 ~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~Al 642 (756)
T 2qvw_A 563 IPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKILAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIAL 642 (756)
T ss_dssp EECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHHHSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHH
T ss_pred CchhhhhcccccCccccccccccccchhhhhHHHHHHHHhCCCccCcchhhhHhhhhhhhccccccccccccHHHHHHHh
Confidence 00000 000 11367899999999999 89999999
Q ss_pred ccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcC--cchhhhhcCcch
Q psy15484 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG--FHHFFKHLSPGL 1078 (1233)
Q Consensus 1001 TH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lg--L~~~l~~~s~~l 1078 (1233)
||+| ||||||||||||+++|++|||.+||++++|.||.+|+++|||++||.+|+++| |++||+....
T Consensus 643 TH~S---------neRLEfLGDaVL~l~vs~~L~~~~p~~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~-- 711 (756)
T 2qvw_A 643 TPHV---------YQKLELLGDAFLKCSLALHLHALHPTLTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHP-- 711 (756)
T ss_dssp STGG---------GHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHST--
T ss_pred cCcc---------chHHHHHHHHHHHHHHHHHHHHhCCCCChHHHHHHHHHHhCChHHHHHHHHhcccHHHHHhcCch--
Confidence 9999 89999999999999999999999999999999999999999999999999999 9999973211
Q ss_pred HHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHHHHH
Q psy15484 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154 (1233)
Q Consensus 1079 ~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p~i~ 1154 (1233)
+ ....+|++||+|||+|||||+|+|+ ++|++|+.+++.|.++
T Consensus 712 --------------------------e------~~~~~kilaD~~EAliGAiylD~G~--~~a~~~v~~~~~~~l~ 753 (756)
T 2qvw_A 712 --------------------------K------IQPDSKVYGDTFEAILAAILLACGE--EAAGAFVREHVLPQVV 753 (756)
T ss_dssp --------------------------T------CCTTCSHHHHHHHHHHHHHHHHHCH--HHHHHHHHHHTGGGCC
T ss_pred --------------------------h------hcCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhh
Confidence 1 1267899999999999999999996 8999999999887654
No 2
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=100.00 E-value=6e-46 Score=415.55 Aligned_cols=254 Identities=63% Similarity=1.028 Sum_probs=209.7
Q ss_pred HHHHhhHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHh
Q psy15484 973 DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSAL 1052 (1233)
Q Consensus 973 ~~~~~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsal 1052 (1233)
+.+...+..||++|||+|+|+.||.+||||+||..+....|||||||||||||+++|++|||.+||++++|.||.+|+++
T Consensus 9 ~~~~~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~l 88 (265)
T 3c4b_A 9 NHLISGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSAL 88 (265)
T ss_dssp HHHTTTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCccCCHHHHHHHhcCcCcCCCCCCCchHhHHHHhHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34455688999999999999999999999999976545679999999999999999999999999999999999999999
Q ss_pred hChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhccc--chhhhhhhhccccCccccCCCCcchhchhhccccch
Q psy15484 1053 VNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF--TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130 (1233)
Q Consensus 1053 VsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~--~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAI 1130 (1233)
|||.+||.+|+++||++||++.++.+...|..|++....++. .....+...+...........||++||+|||+||||
T Consensus 89 V~~~~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAi 168 (265)
T 3c4b_A 89 VNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 168 (265)
T ss_dssp SSHHHHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHcChHHHHHhcChhHHHHHHHHHHHHhhhhhhcchhHHhhhcchhhhhhcccccchHHHHHHHHHhhhe
Confidence 999999999999999999998888888899999884321110 000000000000011233578999999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhhcCCCCChHHHHHhhccccCcccCCccccCCCEEEEEEEECCeEEEEEEeCCHH
Q psy15484 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYC 1210 (1233)
Q Consensus 1131 ylDsG~dl~~v~~~i~~ll~p~i~~~~~~~pk~pl~eL~e~~~~~~~f~~~~~~~~~~~~~v~V~V~g~~~~~G~G~Skk 1210 (1233)
|+|+|+|++.||+||.++|.|.++.+...+|++|+++|++.++....+.. .+..+.+.|+|+|+|+|+.+|+|.|+|||
T Consensus 169 ylD~G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~~~~~-~~~~~~~~f~v~v~v~~~~~~~G~G~SkK 247 (265)
T 3c4b_A 169 YMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSP-AERTYDGKVRVTVEVVGKGKFKGVGRSYR 247 (265)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTEEECC-CEECTTSCEEEEEEETTTEEEEEEESSHH
T ss_pred eeecCCCHHHHHHHHHHHHHHHHHhHhhcCCCCHHHHHHHhccCCceeee-ccccCCCcEEEEEEEecceEEEEeeCCHH
Confidence 99999999999999999999999876556799999999999876443333 23345688999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhc
Q psy15484 1211 IAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1211 ~Ak~~AAk~AL~~L~~~ 1227 (1233)
+||+.||+.||++|+..
T Consensus 248 ~Aeq~AA~~AL~~l~~~ 264 (265)
T 3c4b_A 248 IAKSAAARRALRSLKAN 264 (265)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhhC
Confidence 99999999999999753
No 3
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=100.00 E-value=1.5e-39 Score=354.27 Aligned_cols=208 Identities=29% Similarity=0.457 Sum_probs=174.5
Q ss_pred hHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHH
Q psy15484 978 GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNII 1057 (1233)
Q Consensus 978 ~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~ 1057 (1233)
.+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||++++|.||.+|+++|||.+
T Consensus 3 ~~~~l~~~lg~~f~~~~ll~~AlTh~S~~~~---~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~ 79 (221)
T 2nug_A 3 MLEQLEKKLGYTFKDKSLLEKALTHVSYSKK---EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEF 79 (221)
T ss_dssp CHHHHHHHHTCCCSSHHHHHHHHBCTTTCSS---SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHH
T ss_pred HHHHHHHHhCCCcCCHHHHHHHhCCCCCCCC---CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHH
Confidence 4678999999999999999999999999743 5999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCC
Q psy15484 1058 FASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMS 1137 (1233)
Q Consensus 1058 La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~d 1137 (1233)
||.+|.++||++|++.. ++ ...+++++|+|||+|||||+|+|++
T Consensus 80 la~~a~~l~l~~~l~~~-~~-----------------------------------~~~~~~lad~~EAliGAiyld~g~~ 123 (221)
T 2nug_A 80 FNLLAQKLELHKFIRIK-RG-----------------------------------KINETIIGDVFEALWAAVYIDSGRD 123 (221)
T ss_dssp HHHHHHTTTGGGTCBSC-TT-----------------------------------CCCHHHHHHHHHHHHHHHHHHTTSC
T ss_pred HHHHHHHcChHHhhccC-CC-----------------------------------cccchHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999731 10 1128999999999999999999997
Q ss_pred HHHHHHHHHHHHHHHHH-hhhc-CCCCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeEEEEEEeCC
Q psy15484 1138 LDTVWKVYYEIMKSEIE-RLSV-SVPKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKGSYKGIGRN 1208 (1233)
Q Consensus 1138 l~~v~~~i~~ll~p~i~-~~~~-~~pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~~~~G~G~S 1208 (1233)
.+.+++|+.+++.|.++ .... ...++|+..|.+++++. ....|.+. .+.+.|+|+|+|+|+ +|+|.|.|
T Consensus 124 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~pks~LqE~~q~~-~~~~p~Y~~~~~~G~~h~~~F~v~v~v~~~-~~~G~G~s 201 (221)
T 2nug_A 124 ANFTRELFYKLFKEDILSAIKEGRVKKDYKTILQEITQKR-WKERPEYRLISVEGPHHKKKFIVEAKIKEY-RTLGEGKS 201 (221)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCSCCCHHHHHHHHHHHH-HSCCCEEEEEEEESCGGGCEEEEEEEETTE-EEEEEESS
T ss_pred HHHHHHHHHHHHHHHHhhhhhccccccCHHHHHHHHHHHc-CCCCceEEEEEeeCCCCCceEEEEEEECCE-EEEEecCC
Confidence 76799999999999988 5442 22355555555555432 11222221 234789999999999 99999999
Q ss_pred HHHHHHHHHHHHHHHhhh
Q psy15484 1209 YCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1209 kk~Ak~~AAk~AL~~L~~ 1226 (1233)
||+||+.||+.||+.|++
T Consensus 202 kK~Ae~~AA~~AL~~L~~ 219 (221)
T 2nug_A 202 KKEAEQRAAEELIKLLEE 219 (221)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 999999999999999974
No 4
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=100.00 E-value=1.6e-40 Score=367.28 Aligned_cols=215 Identities=28% Similarity=0.428 Sum_probs=127.8
Q ss_pred hhHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChH
Q psy15484 977 DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056 (1233)
Q Consensus 977 ~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~ 1056 (1233)
..+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||+.++|.||.+|+++|||+
T Consensus 26 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~---~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~ 102 (248)
T 3n3w_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS---YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEK 102 (248)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHTBCTTSBTT---BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHhcCcCCCCC---CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHH
Confidence 34789999999999999999999999999753 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCC
Q psy15484 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136 (1233)
Q Consensus 1057 ~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~ 1136 (1233)
+||.+|.++||++||+. +++. . .......+|++||+|||+|||||+|+|+
T Consensus 103 ~La~~a~~lgL~~~l~~-~~~e------------~-----------------~~~g~~~~~~lad~fEAliGAiyld~G~ 152 (248)
T 3n3w_A 103 SFAKIANSLNLGDFILM-SVAE------------E-----------------NNGGKEKPSILSDALEAIIGAIHLEAGF 152 (248)
T ss_dssp HHHHHHHHTTGGGTCBC-CHHH------------H-----------------HTTGGGCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCcHHHhhc-Cchh------------h-----------------hcCCCCCccHHHHHHHHHHHHHHHHCCh
Confidence 99999999999999984 2210 0 0012456899999999999999999996
Q ss_pred CHHHHHHHHHHHHHHHHHhhhc----CCCCChHHHHHhhcccc-CcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCH
Q psy15484 1137 SLDTVWKVYYEIMKSEIERLSV----SVPKSPIRELLELEPEN-ARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNY 1209 (1233)
Q Consensus 1137 dl~~v~~~i~~ll~p~i~~~~~----~~pk~pl~eL~e~~~~~-~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Sk 1209 (1233)
+.|++|+.+++.|.++.... .+||+.|+|+.+..... +.|..... ..+.+.|+|+|+|+|+.+|+|.|.||
T Consensus 153 --~~~~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~SK 230 (248)
T 3n3w_A 153 --EFAKTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELARAIAGSK 230 (248)
T ss_dssp --HHHHHHHHHHHHHHCC--------------------------------------------------------------
T ss_pred --HHHHHHHHHHHHHHHHHhhccccccCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEEEeeeCCH
Confidence 89999999999999876432 34555555555432211 12221111 11346799999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhh
Q psy15484 1210 CIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1210 k~Ak~~AAk~AL~~L~~ 1226 (1233)
|+||+.||+.||+.|+.
T Consensus 231 K~Aeq~AA~~AL~~L~~ 247 (248)
T 3n3w_A 231 KEAQQMAAKIALEKLGA 247 (248)
T ss_dssp -----------------
T ss_pred HHHHHHHHHHHHHHHHc
Confidence 99999999999999875
No 5
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=100.00 E-value=8.3e-39 Score=354.94 Aligned_cols=218 Identities=26% Similarity=0.382 Sum_probs=177.5
Q ss_pred hhHHHHHHHcCCccCCHhHHHhhcccccccCCC-CCC-----CchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHH
Q psy15484 977 DGFDKFEESINYRFKDKSYLLQAMTHASYFLNT-LTD-----CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRS 1050 (1233)
Q Consensus 977 ~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~-~~~-----~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRs 1050 (1233)
..+..||++|||+|+|+.||.+||||+||.... ... +||||||||||||+++|++|||.+||++++|.||.+|+
T Consensus 19 ~~~~~l~~~lgy~f~~~~LL~~AlTH~S~~~~~~~~~~~~~~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~ 98 (252)
T 1o0w_A 19 KIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKS 98 (252)
T ss_dssp HHHHHHHHHHCCCCSSHHHHHHHHBCHHHHHHHHHTTCTTCCCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHhCCCCccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 347789999999999999999999999996421 123 89999999999999999999999999999999999999
Q ss_pred HhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccch
Q psy15484 1051 ALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130 (1233)
Q Consensus 1051 alVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAI 1130 (1233)
++|||.+||.+|.++||++||+. +++. .. ......++++||+|||+||||
T Consensus 99 ~lV~~~~la~~a~~lgL~~~l~~-~~~e------------~~-----------------~~~~~~~~~lad~~EAliGAi 148 (252)
T 1o0w_A 99 AAASEEVLAMVSRKMNLGKFLFL-GKGE------------EK-----------------TGGRDRDSILADAFEALLAAI 148 (252)
T ss_dssp HHTSHHHHHHHHHHTTHHHHCBC-CHHH------------HH-----------------TTGGGCHHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHcCcHHhhcc-Cchh------------hh-----------------cCCCCCccHHHhHHHHHHHHH
Confidence 99999999999999999999983 2210 00 011356899999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHHhhhc-CCCCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeEEE
Q psy15484 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSV-SVPKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKGSY 1202 (1233)
Q Consensus 1131 ylDsG~dl~~v~~~i~~ll~p~i~~~~~-~~pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~~~ 1202 (1233)
|+|+|+ +.+++|+.+++.|.++.... ...++|+..|.+++++. ....|.+. .+.+.|+|+|+|+|+.+|
T Consensus 149 yld~g~--~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~LqE~~q~~-~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~ 225 (252)
T 1o0w_A 149 YLDQGY--EKIKELFEQEFEFYIEKIMKGEMLFDYKTALQEIVQSE-HKVPPEYILVRTEKNDGDRIFVVEVRVNGKTIA 225 (252)
T ss_dssp HHHHCH--HHHHHHHHHHHHHHHHHHHTTCCCSCHHHHHHHHHHHH-HSSCCEEEEEEEECCTTSCEEEEEEEETTEEEE
T ss_pred HHcCCH--HHHHHHHHHHHHHHHHHhhhcccccCHHHHHHHHHHHc-CCCCceEEEEeeeCCCCCCeEEEEEEECCEEEE
Confidence 999996 89999999999999887542 22455555555555432 11222221 135789999999999999
Q ss_pred EEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1203 KGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1203 ~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+|.|.|||+||+.||+.||+.|+..
T Consensus 226 ~G~G~SKK~Aeq~AA~~AL~~L~~~ 250 (252)
T 1o0w_A 226 TGKGRTKKEAEKEAARIAYEKLLKE 250 (252)
T ss_dssp EEEESSHHHHHHHHHHHHHHHHC--
T ss_pred EEeeCCHHHHHHHHHHHHHHHHhhc
Confidence 9999999999999999999999754
No 6
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.1e-38 Score=352.02 Aligned_cols=218 Identities=27% Similarity=0.339 Sum_probs=128.7
Q ss_pred hHHHHHHHcCCccCCHhHHHhhcccccccCC-CCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChH
Q psy15484 978 GFDKFEESINYRFKDKSYLLQAMTHASYFLN-TLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056 (1233)
Q Consensus 978 ~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~-~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~ 1056 (1233)
.+..||++|||+| |+.||.+||||+||..+ ....+||||||||||||+++|++|||.+||++++|.||.+|+++|||.
T Consensus 6 ~l~~l~~~lgy~f-~~~ll~~AlTH~S~~~~~~~~~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~ 84 (242)
T 2a11_A 6 SRQPLLDALGVDL-PDELLSLALTHRSYAYENGGLPTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQ 84 (242)
T ss_dssp CCHHHHHHHTSCC-CHHHHHHHTBCHHHHHHTTSCCCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHH
T ss_pred HHHHHHHHHCCCC-CHHHHHHHhCCcCccccCCCCCccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHH
Confidence 4678999999999 99999999999999642 345799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHc---CcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhc
Q psy15484 1057 IFASLAVRL---GFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD 1133 (1233)
Q Consensus 1057 ~La~iA~~l---gL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylD 1133 (1233)
+||.+|.++ ||++||+. +++- .. ......+++++|+|||+|||||+|
T Consensus 85 ~la~~a~~l~~~gL~~~l~~-~~~e------------~~-----------------~~~~~~~~~lad~~EAliGAiyld 134 (242)
T 2a11_A 85 ALADVARRLCAEGLGVHVLL-GRGE------------AN-----------------TGGADKSSILADGMESLLGAIYLQ 134 (242)
T ss_dssp HHHHHHHHHSSSCSGGGCBC-CHHH------------HH-----------------TTGGGCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhChHHHhhc-Cchh------------hh-----------------cCCCCCccHHHHHHHHHHHHHHhc
Confidence 999999999 99999983 2210 00 011346899999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHhhhc----CCCCChHHHHHhhccc-cCcccCCc-cccCCCEEEEEEEECCeEEEEEEeC
Q psy15484 1134 SGMSLDTVWKVYYEIMKSEIERLSV----SVPKSPIRELLELEPE-NARFSKPE-KLADGRRVRVTVEVFGKGSYKGIGR 1207 (1233)
Q Consensus 1134 sG~dl~~v~~~i~~ll~p~i~~~~~----~~pk~pl~eL~e~~~~-~~~f~~~~-~~~~~~~~~v~V~V~g~~~~~G~G~ 1207 (1233)
+|+ +.+++|+.+++.|.++.... .+||+.|+|+.+.... .+.|.... ...+.+.|+|+|+|+|+.+|+|.|.
T Consensus 135 ~g~--~~~~~~i~~~~~~~~~~~~~~~~~~dpkt~Lqe~~q~~~~~~p~Y~~~~~Gp~h~~~F~v~v~v~g~~~~~G~G~ 212 (242)
T 2a11_A 135 HGM--EKAREVILRLFGPLLDAAPTLGAGLDWKTSLQELTAARGLGAPSYLVTSTGPDHDKEFTAVVVVMDSEYGSGVGR 212 (242)
T ss_dssp HCH--HHHHHHHHHHTHHHHHHTTC-------------------------------------------------------
T ss_pred CCH--HHHHHHHHHHHHHHHHHhhhccccCChHHHHHHHHHHhCCCCCeEEEeccCCCCCCeEEEEEEECCEEEEEeeeC
Confidence 996 89999999999999887542 2466666666553321 12222211 0123467999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHhhhcC
Q psy15484 1208 NYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1208 Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
|||+||+.||+.||+.|+...
T Consensus 213 skk~Ae~~AA~~AL~~L~~~~ 233 (242)
T 2a11_A 213 SKKEAEQKAAAAAWKALEVLD 233 (242)
T ss_dssp ---------------------
T ss_pred CHHHHHHHHHHHHHHHHhhcc
Confidence 999999999999999997643
No 7
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=100.00 E-value=6.2e-38 Score=359.40 Aligned_cols=253 Identities=19% Similarity=0.187 Sum_probs=142.7
Q ss_pred CchhHHHHHHHHHHHHhcCChh-HHHHHHHHhcccccCCCCCCCChhhhHHHHhhHHHHHHHcCCc-cCCHhHHHhhccc
Q psy15484 925 DKSIADCVEALIGAYLIECGPR-GALLFMSWLGLKVIPPVTNPESKHLSDVLLDGFDKFEESINYR-FKDKSYLLQAMTH 1002 (1233)
Q Consensus 925 dK~iADvvEALIGA~~l~~G~~-~a~~~l~wlgi~~~~~~~~p~~~~~~~~~~~~~~~le~~LgY~-Fk~~~LL~~AlTH 1002 (1233)
+|+|||.-=-.||-++-..-.. .-..+++.+|++.. ...||++|||+ |+|+.||.+||||
T Consensus 48 ~~~~~~~~~~~v~~~~~~~~~~~~i~~~~~~~~~~~~------------------~~~lE~~igy~~F~d~~LL~~ALTH 109 (341)
T 3rv0_A 48 DYTILNTPTLNVAKTLLGNRYSLDLIDLFQSHDFKDS------------------NTDVDMFIKYPVVYDENLENLAFMH 109 (341)
T ss_dssp HHHHHTSHHHHHHHHHHTTTTTCCHHHHHHHTTCCSS------------------CCTTGGGCSSCCCSCHHHHHHHHCC
T ss_pred HHHhccCCccchhhhhhccCccccHHHHHHHcCCCcc------------------hhHHHHhcCCCCcCCHHHHHHHhcC
Confidence 4677776555555554443321 12334455554321 23589999999 9999999999999
Q ss_pred ccccCCC--------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhc
Q psy15484 1003 ASYFLNT--------LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHL 1074 (1233)
Q Consensus 1003 ~Sy~~~~--------~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~ 1074 (1233)
+||.... ...+||||||||||||+++|++|||.+||++++|.||.+|+++|||.+||.+|+++||++||++.
T Consensus 110 ~S~~~~~~~~~~~~~~~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~ 189 (341)
T 3rv0_A 110 KSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGN 189 (341)
T ss_dssp CCCC---CCSCHHHHGGGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCS
T ss_pred cCccccccccccccccCCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhc
Confidence 9997542 24689999999999999999999999999999999999999999999999999999999999842
Q ss_pred -CcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcC-CCCHHHHHHHHHHHHHHH
Q psy15484 1075 -SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDS-GMSLDTVWKVYYEIMKSE 1152 (1233)
Q Consensus 1075 -s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDs-G~dl~~v~~~i~~ll~p~ 1152 (1233)
+++.. ......++++||+|||+|||||+|+ |.++++|++|+.+++.|.
T Consensus 190 ~g~~~~------------------------------~~~~~~~~ilaD~fEAlIGAIylD~~~~G~~~a~~fi~~l~~~~ 239 (341)
T 3rv0_A 190 IATPTR------------------------------VVKDKMSKRYADCVEAYIGALVIDRFGTEFLDIKEWLEELSEKK 239 (341)
T ss_dssp SCCC----------------------------------CCHHHHHHHHHHHHHHHHHHHHHCSSTTHHHHHHHHHHTHHH
T ss_pred CChhhh------------------------------ccCCccccHHHHHHHHHHHHHhhcCccCCHHHHHHHHHHHHHHH
Confidence 22100 0011357999999999999999999 234599999999999999
Q ss_pred HHhhhc--------CCCCChHHHHHhhccccCcccCCccc--cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHH
Q psy15484 1153 IERLSV--------SVPKSPIRELLELEPENARFSKPEKL--ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALK 1222 (1233)
Q Consensus 1153 i~~~~~--------~~pk~pl~eL~e~~~~~~~f~~~~~~--~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~ 1222 (1233)
+..+.. .+||+.|+|++|.... -.++.+. ...+.|+|+|+|+|+.+|+|.|+|+|+||++||+.||+
T Consensus 240 l~~~~~~~~~~~~~~d~Kt~LqE~~Q~~~~---~~~~~Y~~~~~~GpF~v~v~i~~~~~g~G~G~SKK~AEq~AA~~AL~ 316 (341)
T 3rv0_A 240 LAKSSQMVIKEPLNKNAKNELAELLQINKL---GHKLHYRKLTEMPPFRVEVKIGDILLDEAEGNSIREAEHRAAMKVLE 316 (341)
T ss_dssp HHCGGGC-------------------------------------------------------------------------
T ss_pred HHHHhhhhhccccccCHHHHHHHHHHHcCC---CCCceEEEEeccCCEEEEEEECCEEEEEEEeCCHHHHHHHHHHHHHH
Confidence 876432 2456666665553221 1112222 22456999999999999999999999999999999999
Q ss_pred HhhhcC
Q psy15484 1223 HLKSAK 1228 (1233)
Q Consensus 1223 ~L~~~~ 1228 (1233)
+|+...
T Consensus 317 ~L~~~~ 322 (341)
T 3rv0_A 317 NDELLR 322 (341)
T ss_dssp ------
T ss_pred Hhhhhh
Confidence 998654
No 8
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.97 E-value=5.1e-32 Score=282.23 Aligned_cols=144 Identities=34% Similarity=0.556 Sum_probs=127.7
Q ss_pred hhHHHHHHHcCCccCCHhHHHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChH
Q psy15484 977 DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNI 1056 (1233)
Q Consensus 977 ~~~~~le~~LgY~Fk~~~LL~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~ 1056 (1233)
..+..||++|||+|+|+.||.+||||+||... .+||||||||||||+++|++|||.+||+.++|.||.+|+.+|||+
T Consensus 26 ~~l~~le~~lgy~F~d~~LL~~AlTH~S~~~~---~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~ 102 (170)
T 3o2r_A 26 KNIEKLEQSLTYEFKDKNLLIHALTHKSFKKS---YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEK 102 (170)
T ss_dssp -CHHHHHHHHTCCCSSHHHHHHHTBCTTSSTT---CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHhcCCCCCCC---cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHH
Confidence 45789999999999999999999999999753 799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCC
Q psy15484 1057 IFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGM 1136 (1233)
Q Consensus 1057 ~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~ 1136 (1233)
+||.+|.++||++||+. +++. . .......+|++||+|||+|||||+|+|+
T Consensus 103 ~La~ia~~lgL~~~l~~-~~~~------------~-----------------~~~~~~~~~ilad~fEAliGAiylD~G~ 152 (170)
T 3o2r_A 103 SFAKIANSLNLGDFILM-SVAE------------E-----------------NNGGKEKPSILSDALEAIIGAIHLEAGF 152 (170)
T ss_dssp HHHHHHHHTTGGGTCBC-CHHH------------H-----------------HTTGGGCHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHcCcHHhhhc-Ccch------------h-----------------hcCCCCcchHHHHHHHHHHHHHHHHCCH
Confidence 99999999999999984 2220 0 0011456899999999999999999996
Q ss_pred CHHHHHHHHHHHHHHHHHh
Q psy15484 1137 SLDTVWKVYYEIMKSEIER 1155 (1233)
Q Consensus 1137 dl~~v~~~i~~ll~p~i~~ 1155 (1233)
++|++|+.+++.|.++.
T Consensus 153 --~~a~~~i~~~~~~~~~~ 169 (170)
T 3o2r_A 153 --EFAKTIALRLIEKNFPQ 169 (170)
T ss_dssp --HHHHHHHHHHHHHHCTT
T ss_pred --HHHHHHHHHHHHHHHhc
Confidence 89999999999998753
No 9
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.97 E-value=5.5e-31 Score=288.10 Aligned_cols=147 Identities=21% Similarity=0.289 Sum_probs=122.7
Q ss_pred HHHHHcCCc-cCCHhHHHhhcccccccCCC--------CCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHH
Q psy15484 981 KFEESINYR-FKDKSYLLQAMTHASYFLNT--------LTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSA 1051 (1233)
Q Consensus 981 ~le~~LgY~-Fk~~~LL~~AlTH~Sy~~~~--------~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsa 1051 (1233)
.+|++|||+ |+|+.||.+||||+||.... ...+||||||||||||+++|++|||.+||+.++|.||.+|+.
T Consensus 87 ~lE~~lgY~~F~d~~LL~~ALTH~S~~~~~~~~~~~~~~~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~ 166 (246)
T 3rv1_A 87 DVDMFIKYPVVYDENLENLAFMHKSFPNMNAHLNDAQKTQLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKES 166 (246)
T ss_dssp GGGGGCSSCCCSCHHHHHHTTCCCC--------------CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred HHHHhcCCCCcCCHHHHHHHHcCCCccccccccccccccccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHH
Confidence 589999999 99999999999999997532 356999999999999999999999999999999999999999
Q ss_pred hhChHHHHHHHHHcCcchhhhhc-CcchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccch
Q psy15484 1052 LVNNIIFASLAVRLGFHHFFKHL-SPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAI 1130 (1233)
Q Consensus 1052 lVsN~~La~iA~~lgL~~~l~~~-s~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAI 1130 (1233)
+|||.+||.+|+++||++||++. +++. . ......++++||+|||+||||
T Consensus 167 lVsn~~La~iA~~lgL~~~l~~~~g~~~----------------------------~--~~~~~~~~ilAD~fEAlIGAI 216 (246)
T 3rv1_A 167 IVNNNNLFDWSTKLNFTKRLQGNIATPT----------------------------R--VVKDKMSKRYADCVQAYIGAL 216 (246)
T ss_dssp HHSHHHHHHHHHHTTSHHHHCSSCC-----------------------------------------CHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHCCcHHHHhhcCCHhh----------------------------h--ccCcccccHHHHHHHHHHHHH
Confidence 99999999999999999999842 2210 0 001246899999999999999
Q ss_pred hhcC-CCCHHHHHHHHHHHHHHHHHhhh
Q psy15484 1131 YLDS-GMSLDTVWKVYYEIMKSEIERLS 1157 (1233)
Q Consensus 1131 ylDs-G~dl~~v~~~i~~ll~p~i~~~~ 1157 (1233)
|+|+ |.+++.|++|+.+++.|.++.+.
T Consensus 217 ylD~~g~~l~~v~~~l~~L~~p~l~e~~ 244 (246)
T 3rv1_A 217 VIDRFGTEFLDIKEWLEELSEKKLAKSS 244 (246)
T ss_dssp HHHHCSSTTHHHHHHHHHHTHHHHHC--
T ss_pred hHcCCCCCHHHHHHHHHHHHHHHHHHhC
Confidence 9999 88899999999999999998753
No 10
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=99.95 E-value=1.1e-28 Score=235.12 Aligned_cols=93 Identities=28% Similarity=0.472 Sum_probs=84.6
Q ss_pred CcchHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 1 l~SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
++|||++|||||++||+|.|+.++|.|.+.++...+ ..| |+|+||.||||| .|+|+||+||++|||+|||+||++||
T Consensus 3 ~~sAi~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~-~~~-c~v~LP~~splr-~i~g~~~~sk~~AK~sAAf~Ac~~L~ 79 (102)
T 2kou_A 3 GGSSISMMYKYCSRLPHDEFFQPKPEFQFKPVDEFG-GTI-CRITLPANAPIS-EIESSLLPSTEAAKKDACLKAVHELH 79 (102)
T ss_dssp CSHHHHHHHHHHTTSSSCTTCCSSCEEEEEECCGGG-CEE-EEEECCTTCSSC-CEEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCccceEEEeEeecCC-CeE-EEEECCCCCCCC-eeeCCccccHHHHHHHHHHHHHHHHH
Confidence 579999999999999999999999999987654321 257 999999999999 69999999999999999999999999
Q ss_pred hcCcccCCCcccchhh
Q psy15484 81 ELKELDNDLMPVTKEF 96 (1233)
Q Consensus 81 ~~GeLdd~LlP~~~e~ 96 (1233)
++|+|||||+|+.++.
T Consensus 80 ~~G~Ldd~LlP~~~~~ 95 (102)
T 2kou_A 80 NLGVLNDFLLPDSKDE 95 (102)
T ss_dssp HHCSCTTTSCCHHHHC
T ss_pred HCCCCccccCCCCCcc
Confidence 9999999999998664
No 11
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=99.89 E-value=1.1e-24 Score=272.07 Aligned_cols=169 Identities=22% Similarity=0.269 Sum_probs=137.9
Q ss_pred HHhhcccccccCCCCCCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcC
Q psy15484 996 LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075 (1233)
Q Consensus 996 L~~AlTH~Sy~~~~~~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s 1075 (1233)
+++||||+||.. ..|||||||||||||+++|++|||.+||++++|+||.+|+++|||++|+.+|+++||++||+. +
T Consensus 319 ~~~AlTh~s~~~---~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~~-~ 394 (756)
T 2qvw_A 319 WRTPFGPFGVSH---TDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAEF-S 394 (756)
T ss_dssp TEEECBGGGBCH---HHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCBC-C
T ss_pred hhhhcccccccC---CCCcHHHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCchHHHHHHHHcChHHHhcc-C
Confidence 355999999974 369999999999999999999999999999999999999999999999999999999999973 1
Q ss_pred cchHHHHHHHHHHhhhcccchhhhhhhhccccCccccCCCCcchhchhhccccchhhc-CCCCHHHHHHHHHHHHHHHHH
Q psy15484 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLD-SGMSLDTVWKVYYEIMKSEIE 1154 (1233)
Q Consensus 1076 ~~l~~~i~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylD-sG~dl~~v~~~i~~ll~p~i~ 1154 (1233)
++ + ...+|++||+|||+|||||+| +|+ +++++|+.+++.+.++
T Consensus 395 ~~---------------------------e-------~~~~~ilaD~~EAliGAiylD~~G~--~~a~~~v~~~~~~~~~ 438 (756)
T 2qvw_A 395 NN---------------------------L-------VAKSKTWADMYEEIVGSIFTGPNGI--YGCEEFLAKTLMSPEH 438 (756)
T ss_dssp SC---------------------------C---------CCCCHHHHHHHHHHHHHHSTTHH--HHHHHHHHHHHBCGGG
T ss_pred CC---------------------------C-------CCcccHHHhHHHHHhCcccccccCh--HHHHHHHHHHHHhhhh
Confidence 11 0 156899999999999999999 986 8999999999988877
Q ss_pred hhhcC-CCCCh-HHHHHhhccccCcccCCccccCCCEEEEEEEECCeEEEEEEeCCHHHHH---------HHHHHHHHHH
Q psy15484 1155 RLSVS-VPKSP-IRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAK---------CTAAKCALKH 1223 (1233)
Q Consensus 1155 ~~~~~-~pk~p-l~eL~e~~~~~~~f~~~~~~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak---------~~AAk~AL~~ 1223 (1233)
..... ..++| ...|.++++ ++.++.|++.+.+.|| .+||+.||++
T Consensus 439 ~~~~~~~~~Dp~Kt~LqE~~q------------------------~~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~ 494 (756)
T 2qvw_A 439 SKTVGSACPDAVTKASKRVCM------------------------GEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLER 494 (756)
T ss_dssp SCC---CCCHHHHHHHHHHHT------------------------SCCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHH
T ss_pred cccccccccCchHHHHHHHHh------------------------ccchhhhhhhhhhHHhhhccccchhhHHHHHHHHh
Confidence 54321 22445 444444432 3334678889999998 7899999999
Q ss_pred hhhcC
Q psy15484 1224 LKSAK 1228 (1233)
Q Consensus 1224 L~~~~ 1228 (1233)
|+++.
T Consensus 495 l~~~~ 499 (756)
T 2qvw_A 495 LRDIP 499 (756)
T ss_dssp HHHSC
T ss_pred hcccc
Confidence 87653
No 12
>3o2r_A Ribonuclease III; structural genomics, center for structural genomics of infec diseases, csgid, nuclease domain, ribonuclase III; HET: MLZ; 1.25A {Campylobacter jejuni subsp} PDB: 3o2r_B*
Probab=99.80 E-value=3.8e-20 Score=192.81 Aligned_cols=105 Identities=26% Similarity=0.358 Sum_probs=91.1
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||++|+++|+.+||.+||..+||.||.+|+.+|||.+|+++|+++||+.||+..+-.
T Consensus 58 ~~neRLEfLGDaVL~l~vs~~L~~~~P~~~eg~Lt~~r~~lVs~~~La~ia~~lgL~~~l~~~~~~-------------- 123 (170)
T 3o2r_A 58 YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAE-------------- 123 (170)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCBCCHHH--------------
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHCHHHHHHHHHHcCcHHhhhcCcch--------------
Confidence 689999999999999999999999999999999999999999999999999999999999743200
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
. .......+|.+||+|||||||
T Consensus 124 -------------------------------~---------------------------~~~~~~~~~ilad~fEAliGA 145 (170)
T 3o2r_A 124 -------------------------------E---------------------------NNGGKEKPSILSDALEAIIGA 145 (170)
T ss_dssp -------------------------------H---------------------------HTTGGGCHHHHHHHHHHHHHH
T ss_pred -------------------------------h---------------------------hcCCCCcchHHHHHHHHHHHH
Confidence 0 000123468999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|+++|++.|..|+..+
T Consensus 146 iylD~G~~~a~~~i~~~ 162 (170)
T 3o2r_A 146 IHLEAGFEFAKTIALRL 162 (170)
T ss_dssp HHHHHCHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHH
Confidence 99999999999998644
No 13
>3rv1_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 1.98A {Vanderwaltozyma polyspora}
Probab=99.77 E-value=5.3e-19 Score=193.54 Aligned_cols=107 Identities=30% Similarity=0.457 Sum_probs=87.7
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
..+|||||||||+||++++|.|||.+||..+||.||.+|+.+|||.+|+++|+++||+.||+.. .+++..
T Consensus 126 ~~~nERLEfLGDaVL~l~vs~~L~~~~P~~~eG~Lt~lRs~lVsn~~La~iA~~lgL~~~l~~~--------~g~~~~-- 195 (246)
T 3rv1_A 126 QLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGN--------IATPTR-- 195 (246)
T ss_dssp CCCSHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTSHHHHCSS--------CC------
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHCCcHHHHhhc--------CCHhhh--
Confidence 4699999999999999999999999999999999999999999999999999999999999732 111100
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
.......|.+||+|||+||
T Consensus 196 -------------------------------------------------------------~~~~~~~~ilAD~fEAlIG 214 (246)
T 3rv1_A 196 -------------------------------------------------------------VVKDKMSKRYADCVQAYIG 214 (246)
T ss_dssp --------------------------------------------------------------------CHHHHHHHHHHH
T ss_pred -------------------------------------------------------------ccCcccccHHHHHHHHHHH
Confidence 0011246899999999999
Q ss_pred HHHhcC-C--hhHHHHHHHHh
Q psy15484 938 AYLIEC-G--PRGALLFMSWL 955 (1233)
Q Consensus 938 A~~l~~-G--~~~a~~~l~wl 955 (1233)
|+|+++ | +..+..|+..|
T Consensus 215 AIylD~~g~~l~~v~~~l~~L 235 (246)
T 3rv1_A 215 ALVIDRFGTEFLDIKEWLEEL 235 (246)
T ss_dssp HHHHHHCSSTTHHHHHHHHHH
T ss_pred HHhHcCCCCCHHHHHHHHHHH
Confidence 999998 4 78888777544
No 14
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=99.75 E-value=9.2e-19 Score=193.44 Aligned_cols=105 Identities=26% Similarity=0.358 Sum_probs=91.1
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||+||+++|+.|||.+||+.+||.||.+|+.+|||.+|.++|+++||+.||+..+-+
T Consensus 58 ~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~lVs~~~La~~a~~lgL~~~l~~~~~e-------------- 123 (248)
T 3n3w_A 58 YNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDFILMSVAE-------------- 123 (248)
T ss_dssp BCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHHHSHHHHHHHHHHTTGGGTCBCCHHH--------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcCcHHHhhcCchh--------------
Confidence 589999999999999999999999999999999999999999999999999999999999743200
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
. .......+|.+||+|||||||
T Consensus 124 -------------------------------~---------------------------~~~g~~~~~~lad~fEAliGA 145 (248)
T 3n3w_A 124 -------------------------------E---------------------------NNGGKEKPSILSDALEAIIGA 145 (248)
T ss_dssp -------------------------------H---------------------------HTTGGGCHHHHHHHHHHHHHH
T ss_pred -------------------------------h---------------------------hcCCCCCccHHHHHHHHHHHH
Confidence 0 000123468999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|+++|++.+..|+..+
T Consensus 146 iyld~G~~~~~~~i~~~ 162 (248)
T 3n3w_A 146 IHLEAGFEFAKTIALRL 162 (248)
T ss_dssp HHHHHCHHHHHHHHHHH
T ss_pred HHHHCChHHHHHHHHHH
Confidence 99999999999988654
No 15
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=99.73 E-value=3e-18 Score=191.48 Aligned_cols=90 Identities=24% Similarity=0.260 Sum_probs=74.9
Q ss_pred hhhccccCCcccccccCC--CCCCCCCcccCcccCCCCCCCCcccCCCCCcCCCCCCCcchhhhhhHHHHHHHHHHHHHh
Q psy15484 726 NINKLNTYGSVEKDVKTE--PKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCT 803 (1233)
Q Consensus 726 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~ERLE~LGDsfLK~~vs~~Lf~~ 803 (1233)
.+++..+|.|.++.|..+ .++ ++..+ ....|||||||||||||+++|+.|||.+
T Consensus 17 ~le~~lgy~F~~~~LL~~AlTH~-S~~~~-----------------------~~~~~neRLEfLGDaVL~l~v~~~L~~~ 72 (265)
T 3c4b_A 17 TFEKKINYRFKNKAYLLQAFTHA-SYHYN-----------------------TITDCYQRLEFLGDAILDYLITKHLYED 72 (265)
T ss_dssp HHHHHHTCCCSSHHHHHHHHBCT-TCTTC-----------------------CSSCCSHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCccCCHHHHHHHhcCc-CcCCC-----------------------CCCCchHhHHHHhHHHHHHHHHHHHHHh
Confidence 455667888888877665 321 11100 0135999999999999999999999999
Q ss_pred CCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchh
Q psy15484 804 YPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839 (1233)
Q Consensus 804 ~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~ 839 (1233)
||+.+||.||.+|+.+|||.+|+.+|+++||+.||+
T Consensus 73 ~p~~~~g~Lt~lrs~lV~~~~La~~a~~lgl~~~l~ 108 (265)
T 3c4b_A 73 PRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 108 (265)
T ss_dssp TTCCCHHHHHHHHHHHSSHHHHHHHHHHTTGGGTCB
T ss_pred CCCCCHHHHHHHHHHHHhhHHHHHHHHHcChHHHHH
Confidence 999999999999999999999999999999999997
No 16
>3o7v_X PIWI-like protein 1; PIWI, RNA silencing, PI-RNA, HIWI1, HILI, PAZ domain, RNA BI protein; HET: OMU; 2.10A {Homo sapiens} PDB: 2l5c_A 2l5d_A 3o3i_X 3o6e_X*
Probab=99.73 E-value=1e-18 Score=172.21 Aligned_cols=97 Identities=27% Similarity=0.491 Sum_probs=76.4
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~ 377 (1233)
...++|.+|++||+| ++|+|++|+||++|.|+|+..++...||+|||+++||+.|.+++||||.++.-
T Consensus 25 ~k~l~G~~V~t~ynn----k~YrI~~I~~~~~p~s~F~~~dg~~~T~~eYyk~kY~i~I~~~~QPLL~~~~k-------- 92 (124)
T 3o7v_X 25 SKELIGLVVLTKYNN----KTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPMLVSQPK-------- 92 (124)
T ss_dssp HHHHTTCEEEETTSS----CEEECCEEETTCCTTCEEECTTSCEEEHHHHHHHHHCCCCCCSSCCEEEECCC--------
T ss_pred HHHcCCCEEEEeeCC----eEEEEeeeCCCCCccCcccCCCCCeeeHHHHHHHHhCceecCCCcceEEEeee--------
Confidence 567999999999987 89999999999999999987656789999999999999999999999977410
Q ss_pred ccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHH
Q psy15484 378 PRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASL 423 (1233)
Q Consensus 378 ~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~ 423 (1233)
.++ .+.+.....+|||||||.++|||+++
T Consensus 93 -----~~~------------~~~~~~~~~iyLipELC~ltGltd~~ 121 (124)
T 3o7v_X 93 -----RRR------------GPGGTLPGPAMLIPELCYLTGLTDKM 121 (124)
T ss_dssp ---------------------------CCEEECGGGEECCCCC---
T ss_pred -----ccc------------CCCCCCcceEEechhheeccCCChHh
Confidence 000 00011235799999999999999986
No 17
>2a11_A Ribonuclease III, RNAse III; nuclease domain, structural genomic protein structure initiative; 2.10A {Mycobacterium tuberculosis}
Probab=99.71 E-value=7.9e-18 Score=185.59 Aligned_cols=105 Identities=28% Similarity=0.393 Sum_probs=90.5
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHc---CCccchhccccCcCCCCCCCccc
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK---VFGESMIATKFEPRDNWLPPGYF 855 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~---gL~~~I~~~~F~p~~~W~PPg~~ 855 (1233)
.||||||||||+||+++|+.|||.+||..+||.||.+|+.+|||.+|.++|+++ ||+.||+..+-+
T Consensus 40 ~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~~~gL~~~l~~~~~e----------- 108 (242)
T 2a11_A 40 PTNERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASVVNTQALADVARRLCAEGLGVHVLLGRGE----------- 108 (242)
T ss_dssp CCTHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHHSHHHHHHHHHHHSSSCSGGGCBCCHHH-----------
T ss_pred CccHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHhhhhChHHHhhcCchh-----------
Confidence 589999999999999999999999999999999999999999999999999999 999999743200
Q ss_pred chhhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHH
Q psy15484 856 VPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEAL 935 (1233)
Q Consensus 856 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEAL 935 (1233)
+ ..+ ....+|.+||+||||
T Consensus 109 ---------------------------------~----------~~~------------------~~~~~~~lad~~EAl 127 (242)
T 2a11_A 109 ---------------------------------A----------NTG------------------GADKSSILADGMESL 127 (242)
T ss_dssp ---------------------------------H----------HTT------------------GGGCHHHHHHHHHHH
T ss_pred ---------------------------------h----------hcC------------------CCCCccHHHHHHHHH
Confidence 0 000 012468999999999
Q ss_pred HHHHHhcCChhHHHHHHHHh
Q psy15484 936 IGAYLIECGPRGALLFMSWL 955 (1233)
Q Consensus 936 IGA~~l~~G~~~a~~~l~wl 955 (1233)
|||+|+++|++.+..|+..+
T Consensus 128 iGAiyld~g~~~~~~~i~~~ 147 (242)
T 2a11_A 128 LGAIYLQHGMEKAREVILRL 147 (242)
T ss_dssp HHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999888765
No 18
>2nug_A Ribonuclease III, RNAse III; dsRNA, RNA interference, endonucleolytic cleavage, hydrolase/RNA complex; 1.70A {Aquifex aeolicus} SCOP: a.149.1.1 d.50.1.1 PDB: 1yyw_A 2nue_A 2nuf_A 1yyk_A 1yz9_A 1yyo_A 2ez6_A 1rc7_A 1i4s_A 1jfz_A 1rc5_A
Probab=99.70 E-value=1.3e-17 Score=181.38 Aligned_cols=99 Identities=25% Similarity=0.278 Sum_probs=88.7
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||++|+++|+.|||.+||+.+||.||.+|+.+|||.+|.++|+++||..||+..+..
T Consensus 34 ~~nerLefLGDavL~~~v~~~L~~~~p~~~~g~Ls~~r~~lV~~~~la~~a~~l~l~~~l~~~~~~-------------- 99 (221)
T 2nug_A 34 EHYETLEFLGDALVNFFIVDLLVQYSPNKREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGK-------------- 99 (221)
T ss_dssp SCSHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHHHTSHHHHHHHHHTTTGGGTCBSCTTC--------------
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHCHHHHHHHHHHcChHHhhccCCCc--------------
Confidence 489999999999999999999999999999999999999999999999999999999999733100
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
..+|.+||+|||||||
T Consensus 100 ----------------------------------------------------------------~~~~~lad~~EAliGA 115 (221)
T 2nug_A 100 ----------------------------------------------------------------INETIIGDVFEALWAA 115 (221)
T ss_dssp ----------------------------------------------------------------CCHHHHHHHHHHHHHH
T ss_pred ----------------------------------------------------------------ccchHHHHHHHHHHHH
Confidence 0168899999999999
Q ss_pred HHhcCChhH--HHHHHHHh
Q psy15484 939 YLIECGPRG--ALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~--a~~~l~wl 955 (1233)
+|+++|.+. +..|+..+
T Consensus 116 iyld~g~~~~~~~~~i~~~ 134 (221)
T 2nug_A 116 VYIDSGRDANFTRELFYKL 134 (221)
T ss_dssp HHHHTTSCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHH
Confidence 999999998 88887654
No 19
>3rv0_A K. polysporus DCR1; RNAse III enzyme, RNA binding protein; 2.29A {Vanderwaltozyma polyspora}
Probab=99.70 E-value=1.2e-17 Score=191.69 Aligned_cols=107 Identities=30% Similarity=0.440 Sum_probs=90.0
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
..||||||||||+||+++++.|||.+||..+||.||.+|+.+|||.+|+.+|+++||+.||+.. .+++..
T Consensus 126 ~~~nERLEfLGDavL~l~vs~~L~~~~P~~~eG~Lt~lr~~lVs~~~La~iA~~lgL~~~l~~~--------~g~~~~-- 195 (341)
T 3rv0_A 126 QLSNERLEFLGDSWLGALVSYIVYTRFPSANEGMLSQMKESIVNNNNLFDWSTKLNFTKRLQGN--------IATPTR-- 195 (341)
T ss_dssp GGCTHHHHHHHHHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHSHHHHHHHHHHTTTTTTTCCS--------SCCC----
T ss_pred CCchHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHhCHHHHHHHHHHcCcHHHhhhc--------CChhhh--
Confidence 3589999999999999999999999999999999999999999999999999999999999732 121100
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
......+|.+||+||||||
T Consensus 196 -------------------------------------------------------------~~~~~~~~ilaD~fEAlIG 214 (341)
T 3rv0_A 196 -------------------------------------------------------------VVKDKMSKRYADCVEAYIG 214 (341)
T ss_dssp ---------------------------------------------------------------CCHHHHHHHHHHHHHHH
T ss_pred -------------------------------------------------------------ccCCccccHHHHHHHHHHH
Confidence 0000135899999999999
Q ss_pred HHHhcC---ChhHHHHHHHHh
Q psy15484 938 AYLIEC---GPRGALLFMSWL 955 (1233)
Q Consensus 938 A~~l~~---G~~~a~~~l~wl 955 (1233)
|+|+++ |++.+..|+..+
T Consensus 215 AIylD~~~~G~~~a~~fi~~l 235 (341)
T 3rv0_A 215 ALVIDRFGTEFLDIKEWLEEL 235 (341)
T ss_dssp HHHHHHCSSTTHHHHHHHHHH
T ss_pred HHhhcCccCCHHHHHHHHHHH
Confidence 999998 999999887643
No 20
>1o0w_A Ribonuclease III, RNAse III; TM1102, structural genomics, JCSG, PSI, protein structure initiative, joint center for structural genomics; 2.00A {Thermotoga maritima} SCOP: a.149.1.1 d.50.1.1
Probab=99.69 E-value=1.1e-17 Score=185.60 Aligned_cols=105 Identities=25% Similarity=0.351 Sum_probs=90.2
Q ss_pred CCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccchh
Q psy15484 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVPK 858 (1233)
Q Consensus 779 ~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~~ 858 (1233)
.||||||||||+||+++|+.|||.+||..+||.||.+|+.+|||.+|.++|+++||..||+..+ +
T Consensus 60 ~~nerLefLGDavL~l~v~~~L~~~~p~~~eg~Ls~~r~~lV~~~~la~~a~~lgL~~~l~~~~----------~----- 124 (252)
T 1o0w_A 60 ESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGK----------G----- 124 (252)
T ss_dssp CCSHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHHHHHTSHHHHHHHHHHTTHHHHCBCCH----------H-----
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCHHHHHHHHHHcCcHHhhccCc----------h-----
Confidence 3899999999999999999999999999999999999999999999999999999999997431 0
Q ss_pred hhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHHH
Q psy15484 859 YLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGA 938 (1233)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIGA 938 (1233)
+. .. .....+|.+||+|||||||
T Consensus 125 ------------------------------e~---------~~------------------~~~~~~~~lad~~EAliGA 147 (252)
T 1o0w_A 125 ------------------------------EE---------KT------------------GGRDRDSILADAFEALLAA 147 (252)
T ss_dssp ------------------------------HH---------HT------------------TGGGCHHHHHHHHHHHHHH
T ss_pred ------------------------------hh---------hc------------------CCCCCccHHHhHHHHHHHH
Confidence 00 00 0112468999999999999
Q ss_pred HHhcCChhHHHHHHHHh
Q psy15484 939 YLIECGPRGALLFMSWL 955 (1233)
Q Consensus 939 ~~l~~G~~~a~~~l~wl 955 (1233)
+|+++|++.+..|+..+
T Consensus 148 iyld~g~~~~~~~i~~~ 164 (252)
T 1o0w_A 148 IYLDQGYEKIKELFEQE 164 (252)
T ss_dssp HHHHHCHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 99999999998887654
No 21
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.69 E-value=3.7e-17 Score=163.43 Aligned_cols=107 Identities=17% Similarity=0.231 Sum_probs=88.3
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHc----Ccc----hhhhhcCcchHHHH
Q psy15484 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL----GFH----HFFKHLSPGLHEVI 1082 (1233)
Q Consensus 1011 ~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~l----gL~----~~l~~~s~~l~~~i 1082 (1233)
..+.+||||||||||+++|++|||.+ |..++|.||.+|+++||.+++|.++.++ +|. .+++
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~eeE~~~~r---------- 77 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLTEEEEAVLR---------- 77 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSCHHHHHHHH----------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCChHHHHHhh----------
Confidence 35899999999999999999999999 8889999999999999999999999999 665 4443
Q ss_pred HHHHHHhhhcccchhhhhhhhccccCccccCCCCcc----hhchhhccccchhhcCCCCHHHHHHHHHHHHH
Q psy15484 1083 QRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKA----LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMK 1150 (1233)
Q Consensus 1083 ~~~v~~~~~~~~~~~~~~~~~~ee~~~~~~~~~pKv----LaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~ 1150 (1233)
.... .........+.+ +||.|||+|||||+|.|+ +.+++|+.+++.
T Consensus 78 -----~Grn---------------~~~~~~~k~~si~~Yr~A~~fEALiGalYLd~g~--er~~~~i~~~~~ 127 (138)
T 1u61_A 78 -----RGRN---------------ANSGTVPKNTDVQTYRHSTAFEALIGYHHLLNNR--ERLDEIVYKAIA 127 (138)
T ss_dssp -----HHTC---------------CCSSCCCTTCCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHH
T ss_pred -----cCCC---------------cccCCCCCCCchhhhhhhhHHHHHHHHHHHCCCH--HHHHHHHHHHHH
Confidence 1110 001122456778 999999999999999997 889999887764
No 22
>3qir_A PIWI-like protein 2; structural genomics consortium, SGC, PAZ domain, RNAI, RNA B RNA binding protein; 2.45A {Homo sapiens} PDB: 3o7x_A
Probab=99.64 E-value=4.2e-17 Score=165.66 Aligned_cols=98 Identities=27% Similarity=0.457 Sum_probs=74.1
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~ 377 (1233)
...++|.+|++|||| ++|+|++|+|+++|.|+|+..++..+||+|||+++||+.|.+++||||.++.-....
T Consensus 25 ~k~l~g~~V~t~ynn----k~YrI~~I~~~~~p~s~F~~~dg~~iT~~eYf~~kY~i~I~~~~qPlL~~~~k~~~~---- 96 (148)
T 3qir_A 25 TKLLVGNIVITRYNN----RTYRIDDVDWNKTPKDSFTMSDGKEITFLEYYSKNYGITVKEEDQPLLIHRPSERQD---- 96 (148)
T ss_dssp HHHHTTCEEEETTTC----CEEECCEEETTCCTTSEEECTTSCEEEHHHHHHHHHCCCCSCTTCCEEEECCTTCCC----
T ss_pred HHHcCCCEEEEccCC----cEEEEeeecCCCCcCccccCCCCCcccHHHHHHHHcCCeecCCCCceEEeecccccC----
Confidence 466899999999976 899999999999999999886667899999999999999999999999774210000
Q ss_pred ccccccccccccCCcHHHHHhhhhcCCccEEEcccccccccCcHHH
Q psy15484 378 PRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFPASL 423 (1233)
Q Consensus 378 ~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~ 423 (1233)
..| ......+|||||||.++||++++
T Consensus 97 -----~~~---------------~~~~~~~yL~pELC~ltgLtd~~ 122 (148)
T 3qir_A 97 -----NHG---------------MLLKGEILLLPELSFMTGIPEKM 122 (148)
T ss_dssp -----C------------------CCSCCEEECGGGEECC------
T ss_pred -----CCC---------------CCccceeeecHHHhhhcCCCHHH
Confidence 000 01135799999999999988876
No 23
>2xfm_A MIWI, PIWI-like protein 1; RNA-protein complex, differentiation, RNA interference; HET: OMU; NMR {Mus musculus}
Probab=99.60 E-value=3e-16 Score=160.42 Aligned_cols=99 Identities=23% Similarity=0.423 Sum_probs=77.9
Q ss_pred cccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~ 377 (1233)
...++|.+|++||+| ++|+|++|+|+.+|.|+|+..++...||+|||+++||+.|.+++||||.++...
T Consensus 26 ~~~l~g~~V~t~y~n----r~yrI~~i~~~~~p~~~F~~~~g~~~T~~eYf~~~Y~i~i~~~~qPlL~~~~~~------- 94 (150)
T 2xfm_A 26 SKELIGLIVLTKYNN----KTYRVDDIDWDQNPKSTFKKADGSEVSFLEYYRKQYNQEITDLKQPVLVSQPKR------- 94 (150)
T ss_dssp HHHHTTCEEEETTTT----EEEECCEEETTCCTTCCCCSSSSCCCCHHHHHHTTCCCCCCCSSSCEEEECSSC-------
T ss_pred HHHhCCcEEEEeeCC----ceEEeeecCCCCCccCeeecCCCceeeHHHHHHHHcCCccCCCCCCeEEecccc-------
Confidence 466899999999976 899999999999999999864467899999999999999999999999885321
Q ss_pred ccccccccccccCCcHHHHHhhhhcCC-ccEEEcccccccccCcHHHHHH
Q psy15484 378 PRYVNRKGINLATTSEETRREIRESLG-KKQLLVPELCLIHPFPASLWRK 426 (1233)
Q Consensus 378 ~r~~~~~g~~~~~~s~~~~~~~~~~~~-~~~~LvPELC~i~~ipas~w~~ 426 (1233)
++ ..++.. ..+|||||||.++|||+++...
T Consensus 95 ------~~-------------~~~~~~~~~~~LppELC~i~~L~d~~rs~ 125 (150)
T 2xfm_A 95 ------RR-------------GPGGTLPGPAMLIPELCYLTGLTDKMRND 125 (150)
T ss_dssp ------TT-------------CCSSCSSCCEEECGGGEEECSTTC-----
T ss_pred ------cc-------------cccccccceEEecHHHhccCCCCHHHHhh
Confidence 00 000112 5689999999999999988653
No 24
>1u61_A Hypothetical protein; structural genomics, PSI, protein STRU initiative, midwest center for structural genomics, MCSG, U function; 2.15A {Bacillus cereus} SCOP: a.149.1.1
Probab=99.58 E-value=3.5e-15 Score=149.17 Aligned_cols=57 Identities=19% Similarity=0.143 Sum_probs=53.9
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHc----CCc
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK----VFG 835 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~----gL~ 835 (1233)
..|+|||||||||||.++|+.|||.+ |...||+||.+|+++||-..+..+++++ +|.
T Consensus 9 ~~~~erLefLGDAVlel~vr~~L~~~-~~~~eg~L~k~r~~~V~a~aqa~~~~~l~~~~~L~ 69 (138)
T 1u61_A 9 QLNSLALAYMGDAVYEQYIRYHLLQK-GKVRPNQLHRLGTSFVSAKAQAKVVYHLLETAFLT 69 (138)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHH-CCSCGGGHHHHHHHHHSHHHHHHHHHHHHHTTCSC
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHcCHHHHHHHHHHhhcccCCC
Confidence 35899999999999999999999999 8889999999999999999999999998 776
No 25
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.58 E-value=1.4e-15 Score=151.60 Aligned_cols=113 Identities=19% Similarity=0.141 Sum_probs=85.1
Q ss_pred CCCchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhh
Q psy15484 1011 TDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQA 1090 (1233)
Q Consensus 1011 ~~~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~ 1090 (1233)
..+.+|||||||||++++|.+|||.+ |. ++|.|+.+|+++||.+++|.++.+++ .+| +.+ =..+++.+.
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~--~~L---te~----E~~~~rrGr 80 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKII--NDL---DEE----FKVIGKRAK 80 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHG--GGS---CHH----HHHHHHHHH
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHH--HHh---CHH----HHHHHHhcc
Confidence 35889999999999999999999999 88 99999999999999999999999984 222 111 011222211
Q ss_pred hcccchhhhhhhhccccCccccCCCCcc----hhchhhccccchhhcCCCCHHHHHHHHHHHHHH
Q psy15484 1091 ENDFTLNQEYYLMEGECDEAEDIEVPKA----LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151 (1233)
Q Consensus 1091 ~~~~~~~~~~~~~~ee~~~~~~~~~pKv----LaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p 1151 (1233)
.. ........+++ +||.|||+|||+|+|.|+ +.+..|+..++.-
T Consensus 81 na---------------~~~~~~k~~si~~Y~~At~fEALiGaLYLd~~~--erl~~ll~~~~~~ 128 (137)
T 2gsl_A 81 NS---------------NIKTFPRSCTVMEYKEATALEAIIGAMYLLKKE--EEIKKIINIVIKG 128 (137)
T ss_dssp C-----------------CCSCCSSSCHHHHHHHHHHHHHHHHHHHTTCH--HHHHHHHHHHHHT
T ss_pred cc---------------cCCCCCCCCChHHHHHhhHHHHHHHHHHHCCCH--HHHHHHHHHHHHH
Confidence 10 01112334554 999999999999999986 8888888887653
No 26
>2gsl_A Hypothetical protein; alpha-helical protein, structural genomics, PSI, protein STR initiative; 2.60A {Fusobacterium nucleatum subsp}
Probab=99.48 E-value=8.6e-14 Score=138.83 Aligned_cols=115 Identities=14% Similarity=0.094 Sum_probs=83.9
Q ss_pred CCCCcchhhhhhHHHHHHHHHHHHHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccchhccccCcCCCCCCCcccch
Q psy15484 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFVP 857 (1233)
Q Consensus 778 g~~~ERLE~LGDsfLK~~vs~~Lf~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I~~~~F~p~~~W~PPg~~~~ 857 (1233)
..|++||||||||||.++|+.|||.+ |. .||+||.+|+.+||-..++.++++++ .++
T Consensus 12 ~~~~~~LefLGDAVleL~vr~~L~~~-~~-~~g~L~k~~~~~V~a~aqa~~~~~l~--~~L------------------- 68 (137)
T 2gsl_A 12 DYSGLELAFLGDAIWELEIRKYYLQF-GY-NIPTLNKYVKAKVNAKYQSLIYKKII--NDL------------------- 68 (137)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHTTS-CB-CHHHHHHHHHHHHSHHHHHHHHHHHG--GGS-------------------
T ss_pred hcCHHHHHHhhHHHHHHHHHHHHHHC-CC-CHHHHHHHHHHHhCHHHHHHHHHHHH--HHh-------------------
Confidence 35899999999999999999999998 88 99999999999999999999998872 221
Q ss_pred hhhHHHHHhcCCCCccccccCCCCcccCChhHHHHHhhhccccccccccccccccccccccccccCCCchhHHHHHHHHH
Q psy15484 858 KYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIG 937 (1233)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~l~dK~iADvvEALIG 937 (1233)
+.+|...+..++....+ . . .....+.+=.+||+||||||
T Consensus 69 ----------------------------te~E~~~~rrGrna~~~-----~----~----~k~~si~~Y~~At~fEALiG 107 (137)
T 2gsl_A 69 ----------------------------DEEFKVIGKRAKNSNIK-----T----F----PRSCTVMEYKEATALEAIIG 107 (137)
T ss_dssp ----------------------------CHHHHHHHHHHHC--CC-----S----C----CSSSCHHHHHHHHHHHHHHH
T ss_pred ----------------------------CHHHHHHHHhcccccCC-----C----C----CCCCChHHHHHhhHHHHHHH
Confidence 12232222222221110 0 0 00011111248999999999
Q ss_pred HHHhcCChhHHHHHHHHhc
Q psy15484 938 AYLIECGPRGALLFMSWLG 956 (1233)
Q Consensus 938 A~~l~~G~~~a~~~l~wlg 956 (1233)
|.|+++|.+.+..|+.++.
T Consensus 108 aLYLd~~~erl~~ll~~~~ 126 (137)
T 2gsl_A 108 AMYLLKKEEEIKKIINIVI 126 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 9999999999999988764
No 27
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.44 E-value=2.5e-07 Score=85.80 Aligned_cols=72 Identities=17% Similarity=0.049 Sum_probs=53.0
Q ss_pred CCCChHHHHHhhccccCcccCCccccCCC-EEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCC
Q psy15484 1160 VPKSPIRELLELEPENARFSKPEKLADGR-RVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPAD 1231 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~~~f~~~~~~~~~~-~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~~~ 1231 (1233)
+||+.|+||.|.......|....-..+.+ .|+|.|.|+|..++.|.|+|||+|++.||+.||+.|....+.+
T Consensus 7 d~Kt~LqE~~Q~~~~~~~Y~~~~Gp~H~~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~~~~ 79 (88)
T 1x48_A 7 GYIGLVNSFAQKKKLSVNYEQCEPNSELPQRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPKT 79 (88)
T ss_dssp CHHHHHHHHHHHTTCCEEEEECCCSSSSSCCEEEEEEESSCEEEEEEESSHHHHHHHHHHHHHHHHHHSCCCC
T ss_pred CHHHHHHHHHHHcCCCCeeEEeeCCCCCCceEEEEEEECCEEEEEeecCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence 46677777776544323333101112345 5999999999999999999999999999999999998776544
No 28
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=98.43 E-value=1.7e-07 Score=87.29 Aligned_cols=41 Identities=37% Similarity=0.341 Sum_probs=35.3
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+.+.|+|.|.|+|. +++|.|+|||+||+.||+.||+.|...
T Consensus 43 H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 83 (90)
T 3llh_A 43 HQPNFTFRVTVGDT-SCTGQGPSKKAAKHKAAEVALKHLKGG 83 (90)
T ss_dssp --CCEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHC--
T ss_pred CCCcEEEEEEECCE-EEEEEeCCHHHHHHHHHHHHHHHHHhc
Confidence 35689999999997 799999999999999999999999754
No 29
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=98.43 E-value=4.8e-07 Score=84.27 Aligned_cols=69 Identities=30% Similarity=0.387 Sum_probs=54.1
Q ss_pred CCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCCC
Q psy15484 1160 VPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~~ 1230 (1233)
.++++|+||.|... .+.|..... ..+.+.|+|.|.|+|.. +.|.|+|||+||+.||+.||..|....+.
T Consensus 15 ~~K~~LqEl~Qk~~-~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~-~~G~G~SKK~AEq~AA~~AL~~L~~~~~~ 85 (91)
T 2l33_A 15 HGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQK-FQGAGSNKKVAKAYAALAALEKLFPDTPL 85 (91)
T ss_dssp STTCHHHHHHHHCS-SCEEEEEEEEECSSCEEEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCCCHHHHHHHhCC-CCeEEEEEeeCCCCCCeEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHhhcCCc
Confidence 58999999999765 333332211 12457899999999987 49999999999999999999999866554
No 30
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=98.40 E-value=6.6e-07 Score=80.52 Aligned_cols=68 Identities=29% Similarity=0.323 Sum_probs=52.6
Q ss_pred CCCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1159 SVPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
+..|+|+++|.|++. ...|..... ..+.+.|+|.|.|+|... .|.|+|||+||+.||+.||+.|...-
T Consensus 4 ~~~K~pl~~L~q~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~~~ 73 (75)
T 3p1x_A 4 KHGKNPVMELNEKRR-GLKYELISETGGSHDKRFVMEVEVDGQKF-QGAGSNKKVAKAYAALAALEKLFPDT 73 (75)
T ss_dssp --CCCHHHHHHHHST-TCCEEEEEEESCTTSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCTTC
T ss_pred CCCCCHHHHHHHcCC-CCEEEEEEeeCCCCCceEEEEEEECCEEE-EEEECCHHHHHHHHHHHHHHHHHccC
Confidence 457999999999863 234433221 235678999999999876 99999999999999999999997643
No 31
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=98.35 E-value=1e-06 Score=81.66 Aligned_cols=43 Identities=21% Similarity=0.110 Sum_probs=37.6
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~ 1229 (1233)
+.+.|+|.|.|+|. +++|.|+|||+||+.||+.||+.|...++
T Consensus 45 H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~p~ 87 (88)
T 3adl_A 45 HRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVHTVPL 87 (88)
T ss_dssp TSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHC---
T ss_pred CCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHHccCC
Confidence 45789999999998 99999999999999999999999987553
No 32
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=98.34 E-value=4e-07 Score=83.90 Aligned_cols=69 Identities=20% Similarity=0.130 Sum_probs=51.2
Q ss_pred CCCChHHHHHhhcc------ccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1160 VPKSPIRELLELEP------ENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~------~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
+||+.|+|+.+... ..+.|..... ..+.+.|+|.|.|+|..++.|.|+|||+|++.||+.||..|...+
T Consensus 2 d~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~~~~~G~G~SKK~AEq~AA~~AL~~L~~~~ 78 (85)
T 2khx_A 2 DPKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGERIGCGKGPSIQQAEMGAAMDALEKYNFPQ 78 (85)
T ss_dssp CSCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTEECCCEEESSHHHHHHHHHHHHHTTCCSSC
T ss_pred CHHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHhHhh
Confidence 57888888887531 1122221111 124578999999999999999999999999999999999987543
No 33
>1vyn_A Argonaute2; nucleic acid binding, RNA interference; NMR {Drosophila melanogaster} SCOP: b.34.14.1
Probab=98.33 E-value=3.3e-07 Score=92.79 Aligned_cols=85 Identities=21% Similarity=0.217 Sum_probs=68.5
Q ss_pred cccccCcEEeccccCC--CCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEeccccccccc
Q psy15484 298 ESKFRDAVVMPWYRNQ--FEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNF 375 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~--d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~Nl 375 (1233)
...++|..|.+.|++. +.+++|.|.+|.++-++.+.|+. .+...|++|||+++ |+.|.+++||+|.+.
T Consensus 34 ~k~LkGl~V~~~~~~~~~~~~r~yrI~~i~~~~a~~~~F~~-~g~~isv~~Yf~~~-~~~l~~p~lP~l~~g-------- 103 (143)
T 1vyn_A 34 EPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTIASYFHSR-NYPLKFPQLHCLNVG-------- 103 (143)
T ss_dssp HHHHTTEEEEECCCTTSCCCCEEEEEEEEEEEETTTCEEES-SSCEEEHHHHHHHT-TCCCSSTTSEEEEEE--------
T ss_pred HHHcCCeEEEEecCCCccCCCceEEEeeccCCCccceEEEc-CCCEEEHHHHHHHc-CCCCCCCCCCeEEec--------
Confidence 3558899999999531 12489999999999999999976 35678999999988 999999999999552
Q ss_pred ccccccccccccccCCcHHHHHhhhhcCCccEEEccccccccc
Q psy15484 376 LTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHP 418 (1233)
Q Consensus 376 L~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ 418 (1233)
.....+||++|||.|.+
T Consensus 104 --------------------------~~~k~~ylP~ElC~i~~ 120 (143)
T 1vyn_A 104 --------------------------SSIKSILLPIELCSIEE 120 (143)
T ss_dssp --------------------------CSSSEEEEEGGGEEECC
T ss_pred --------------------------CCCCCeEeccEeEEccC
Confidence 01235899999999965
No 34
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=98.31 E-value=8.9e-07 Score=78.29 Aligned_cols=39 Identities=28% Similarity=0.239 Sum_probs=36.5
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhh
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~ 1225 (1233)
+.+.|+|.|.|+|. +++|.|+|||+|++.||+.||..|+
T Consensus 30 h~~~F~~~v~v~~~-~~~G~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 30 HKREFTITCRVETF-VETGSGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp GGCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEECCE-EEEeecCCHHHHHHHHHHHHHHHHh
Confidence 35789999999998 9999999999999999999999986
No 35
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=98.29 E-value=3.8e-07 Score=85.10 Aligned_cols=66 Identities=26% Similarity=0.199 Sum_probs=47.2
Q ss_pred CCChHHHHHhhccccCcccCCcc-ccCCCEEEEEEEECCe-EEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1161 PKSPIRELLELEPENARFSKPEK-LADGRRVRVTVEVFGK-GSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~-~~~~~~~~v~V~V~g~-~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
+|+.|+|++|.....+.|..... ..+.+.|+|.|.|+|. .+|.|.|+|||+|++.||+.||..|+-
T Consensus 8 ~KT~LQE~~Q~~~~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~ 75 (94)
T 1t4n_A 8 AKRQLYSLIGYASLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKM 75 (94)
T ss_dssp HHHHHHHHTCSSSSCCEEEECCCCSSSCCSEEEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHCHHH
T ss_pred chHHHHHHHcCCCCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHH
Confidence 56667777664311112211111 1234679999999999 899999999999999999999998864
No 36
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.29 E-value=5e-07 Score=83.08 Aligned_cols=41 Identities=27% Similarity=0.209 Sum_probs=37.9
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+.+.|+|.|.|+| .+++|.|+|||+||+.||+.||+.|...
T Consensus 37 h~~~F~~~v~v~~-~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 77 (84)
T 2dix_A 37 HVPTFTFRVTVGD-ITCTGEGTSKKLAKHRAAEAAINILKAN 77 (84)
T ss_dssp SSCEEEEEEEETT-EEEEECSSCTTHHHHHHHHHHHHHHHHT
T ss_pred CCCeEEEEEEECC-EEEEeeeCCHHHHHHHHHHHHHHHHhcc
Confidence 4678999999999 8899999999999999999999999754
No 37
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.26 E-value=1e-06 Score=83.44 Aligned_cols=66 Identities=21% Similarity=0.114 Sum_probs=48.3
Q ss_pred CCChHHHHHhhccccCcccCCccc-----cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1161 PKSPIRELLELEPENARFSKPEKL-----ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~~-----~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
.++|...|+++++.. ....|.|. ...+.|+|.|.|+|..++.|.|+|||+||+.||+.||..|...
T Consensus 15 ~kd~Kt~LqE~~Q~~-~~~~P~Y~~~~~~Gp~~~F~~~V~v~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 85 (98)
T 1x47_A 15 GKSEVCILHEYMQRV-LKVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 85 (98)
T ss_dssp CCCHHHHHHHHHHHH-TCSCCEEEEEECSSSSCCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHCSS
T ss_pred CCCHHHHHHHHHHHc-CCCCCeEEEEEeECCCCcEEEEEEECCEEEEEeeeCCHHHHHHHHHHHHHHHHHhh
Confidence 455555555555432 22223332 1127899999999999999999999999999999999999754
No 38
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.25 E-value=2e-06 Score=79.97 Aligned_cols=65 Identities=25% Similarity=0.220 Sum_probs=47.9
Q ss_pred CChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1162 KSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1162 k~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
+++...|+++++.. ....+.|. .+.+.|+|+|.|+|. +++|.|+|||+||+.||+.||+.|.+..
T Consensus 16 ~d~Kt~LqE~~Qk~-~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~~s 87 (89)
T 2cpn_A 16 CNPVGALQELVVQK-GWRLPEYTVTQESGPAHRKEFTMTCRVERF-IEIGSGTSKKLAKRNAAAKMLLRVSGPS 87 (89)
T ss_dssp CCHHHHHHHHHHHH-TCCCCEEEEEEEECCSSSCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHHSCC
T ss_pred CCHHHHHHHHHHHc-CCCCCeEEEEeeECCCCCCeEEEEEEECCE-EEEeeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 45555555555432 22223321 246789999999998 9999999999999999999999997543
No 39
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=98.23 E-value=2.6e-06 Score=80.43 Aligned_cols=69 Identities=13% Similarity=0.082 Sum_probs=52.2
Q ss_pred CCCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Q psy15484 1159 SVPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~ 1229 (1233)
.+||+.|+|+.+.. ..+.|..... ..+.+.|+|.|.|+|... .|.|+|||+|++.||+.||..|+...+
T Consensus 16 ~d~Kt~LqE~~Q~~-~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~aL~~L~~~~~ 86 (97)
T 2dmy_A 16 IDLMNALMRLNQIR-PGLQYKLLSQSGPVHAPVFTMSVDVDGTTY-EASGPSKKTAKLHVAVKVLQAMGYPTG 86 (97)
T ss_dssp SSCTHHHHHHHHHS-CSCCCEEEEEESCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHTCCCS
T ss_pred CCHHHHHHHHHhcC-CCceEEEEEeeCCCCCCeEEEEEEECCEEE-EEeeCCHHHHHHHHHHHHHHHhCCCCc
Confidence 46888888888864 2233332211 134688999999999886 999999999999999999999975433
No 40
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=98.21 E-value=1.2e-06 Score=79.06 Aligned_cols=62 Identities=21% Similarity=0.139 Sum_probs=47.5
Q ss_pred CCChHHHHHhhccccCcccCCccc-------cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1161 PKSPIRELLELEPENARFSKPEKL-------ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~~-------~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
||+.|+|+.+... ...|.|. .+.+.|+|.|.|+|..++.|.|+|||.||+.||+.||..|..
T Consensus 6 ~Kt~LqE~~q~~~----~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~ 74 (76)
T 3adj_A 6 CKNLLQEYAQKMN----YAIPLYQCQKVETLGRVTQFTCTVEIGGIKYTGAATRTKKDAEISAGRTALLAIQS 74 (76)
T ss_dssp HHHHHHHHHHTTT----CCCCEEEEEEEECSSSCEEEEEEEEETTEEEECCCBSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhC----CCCCeEEEeeccCCCCCCcEEEEEEECCEEEEEeccCCHHHHHHHHHHHHHHHHhh
Confidence 5566666665432 2223321 245789999999999999999999999999999999999964
No 41
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=98.20 E-value=1.4e-06 Score=77.94 Aligned_cols=66 Identities=24% Similarity=0.261 Sum_probs=49.4
Q ss_pred CCCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1159 SVPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
.+||+.|+||.+. .....|..... ..+.+.|+|.|.|+|... .|.|+|||+|++.||+.||+.|..
T Consensus 4 ~d~Ks~Lqe~~q~-~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~~-~G~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 4 VLPKNALMQLNEI-KPGLQYMLLSQTGPVHAPLFVMSVEVNGQVF-EGSGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSSHHHHHHHHHH-CSCCEEEEEEEECSSSSCEEEEEEESSSSEE-EEEESSHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHcC-CCCceEEEEEeeCCCCCCeEEEEEEECCEEE-EeecCCHHHHHHHHHHHHHHHHhc
Confidence 3578888888874 21223322211 134688999999999884 999999999999999999999875
No 42
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.20 E-value=7.3e-07 Score=84.21 Aligned_cols=43 Identities=28% Similarity=0.223 Sum_probs=39.4
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
+.+.|+|.|.|+|+.++.|.|+|||+||+.||+.||..|....
T Consensus 43 H~~~F~v~v~i~g~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~~ 85 (97)
T 1x49_A 43 HDRRFTFQVLIDEKEFPEAKGRSKQEARNAAAKLAVDILDNEN 85 (97)
T ss_dssp SSCEEEEEEEESSCCCCCEEESSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCcEEEEEEECCEEEEEEeeCCHHHHHHHHHHHHHHHHHhhc
Confidence 4578999999999999999999999999999999999997543
No 43
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=98.19 E-value=2e-06 Score=76.95 Aligned_cols=67 Identities=22% Similarity=0.100 Sum_probs=48.5
Q ss_pred CCCChHHHHHhhcccc-CcccCCcc-ccCCCEEEEEEEECCeEEEEEEe-CCHHHHHHHHHHHHHHHhhh
Q psy15484 1160 VPKSPIRELLELEPEN-ARFSKPEK-LADGRRVRVTVEVFGKGSYKGIG-RNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~-~~f~~~~~-~~~~~~~~v~V~V~g~~~~~G~G-~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
+||+.|+|+.+..... +.|..... ..+.+.|+|.|.|+|..+++|.| +|||+|++.||+.||..|++
T Consensus 4 d~Kt~LqE~~q~~~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g~~~~~G~G~~sKK~Aeq~AA~~al~~L~k 73 (73)
T 3adg_A 4 VFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAK 73 (73)
T ss_dssp SHHHHHHHHHHHTTCCCCEEEEEEESSTTSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHcCCCCCEEEEEeECCCCCCeEEEEEEECCEEEEeeeccCCHHHHHHHHHHHHHHHhhC
Confidence 4566667766653221 12221111 12457899999999999999999 99999999999999999863
No 44
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=98.19 E-value=1.1e-06 Score=83.22 Aligned_cols=67 Identities=15% Similarity=0.034 Sum_probs=50.4
Q ss_pred CCCChHHHHHhhccccCcccCCccc--cCCCEEEEEEEECC-eEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1160 VPKSPIRELLELEPENARFSKPEKL--ADGRRVRVTVEVFG-KGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~~~f~~~~~~--~~~~~~~v~V~V~g-~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+||+.|+|++|.......|.. ... .+.+.|+|.|.|+| +.+++|.|+|||+||+.||+.||+.|...
T Consensus 7 d~Kt~LqE~~Qk~~~~P~Y~~-~~~Gp~H~~~F~~~V~v~g~~~~~~G~G~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 7 GIKNFLYAWCGKRKMTPAYEI-RAVGNKNRQKFMCEVRVEGFNYAGMGNSTNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp SSHHHHHHHHHHTTCCCEEEE-EEEECSSSEEEEEEEECTTCSCCEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCCCCCeEEE-eeecCCCCCeEEEEEEECCeEEEEEeccCCHHHHHHHHHHHHHHHHHhh
Confidence 567777777765422223322 111 24578999999999 78999999999999999999999999753
No 45
>3mj0_A Protein argonaute-2; argonaut, PAZ domain, 3'-END 2'-O-methylated ssRNA, RNA-RNA protein complex; HET: OMU; 2.31A {Drosophila melanogaster} SCOP: b.34.14.1 PDB: 1t2r_A 1t2s_A
Probab=98.17 E-value=6.5e-07 Score=88.35 Aligned_cols=67 Identities=15% Similarity=0.168 Sum_probs=55.4
Q ss_pred cccccCcEEeccccCC--CCCeEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceEEe
Q psy15484 298 ESKFRDAVVMPWYRNQ--FEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDV 366 (1233)
Q Consensus 298 ~~~~~~~VV~p~Y~n~--d~~~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v 366 (1233)
...++|..|.+.|++. ..++.|.|.+|.++-.+..+|+. ++...|++|||+++ |+.|.+++||+|.+
T Consensus 32 ~k~LkGl~V~~~~~~~~~~~~r~yrI~~l~~~~a~~~~F~~-~g~~isV~~Yf~~~-~~~l~~p~lP~l~~ 100 (124)
T 3mj0_A 32 EPFLRGINVVYTPPQSFQSAPRVYRVNGLSRAPASSETFEH-DGKKVTIASYFHSR-NYPLKFPQLHCLNV 100 (124)
T ss_dssp HHHHTTCEEEECCCGGGTCCCEEEECCEEEEEETTTCEEES-SSSEEEHHHHHHTT-TCCCSCSSSEEEEC
T ss_pred HHHhCCeEEEEecccccccCCceEEEEeccCCCccccEEee-CCcEEEHHHHHHHc-CCcccCCCCCeEee
Confidence 4568899888888420 12488999999999999999986 35789999999998 99999999999954
No 46
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.17 E-value=3.6e-06 Score=78.21 Aligned_cols=40 Identities=33% Similarity=0.273 Sum_probs=37.0
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
+.+.|+|.|.|+|. ++.|.|+|||+||+.||+.||+.|..
T Consensus 36 H~~~F~~~v~v~g~-~~~G~G~SKK~Aeq~AA~~AL~~L~~ 75 (89)
T 1uhz_A 36 RRREFVMQVKVGNE-VATGTGPNKKIAKKNAAEAMLLQLGY 75 (89)
T ss_dssp TTCEEEEEEEETTE-EEEEEESSHHHHHHHHHHHHHHHHTS
T ss_pred CCCeEEEEEEECCE-EEEEeeCCHHHHHHHHHHHHHHHHhc
Confidence 46789999999996 89999999999999999999999964
No 47
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=98.15 E-value=1.1e-06 Score=84.89 Aligned_cols=63 Identities=25% Similarity=0.152 Sum_probs=47.4
Q ss_pred CCCChHHHHHhhccccCcccCCccc------cCCCEEEEEEEECCe-EEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1160 VPKSPIRELLELEPENARFSKPEKL------ADGRRVRVTVEVFGK-GSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~~~f~~~~~~------~~~~~~~v~V~V~g~-~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
++|+.|+||+|.. ...|.|. .+.+.|+|.|.|+|. .+|.|.|+|+|+|++.||+.||..+..+
T Consensus 9 D~KT~LQE~~Q~~-----~~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~g~G~G~SKK~AEQ~AA~~AL~~l~~l 78 (117)
T 1t4o_A 9 NAKRQLYSLIGYA-----SLRLHYVTVKKPTAVDPNSIVECRVGDGTVLGTGVGRNIKIAGIRAAENALRDKKML 78 (117)
T ss_dssp THHHHHHHHHCCG-----GGCCEEEEEECCCSSCCCEEEEEECTTCCEEEEEEESSHHHHHHHHHHHHHHCHHHH
T ss_pred CchHHHHHHHcCC-----CCCCEEEEeeeCCCCCCeEEEEEEECCEEEEEEEEeCCHHHHHHHHHHHHHHHHHHH
Confidence 4566666666542 1223332 234689999999999 8999999999999999999999887643
No 48
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=98.14 E-value=4.4e-07 Score=81.83 Aligned_cols=40 Identities=20% Similarity=0.081 Sum_probs=36.9
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhh
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~ 1226 (1233)
+.+.|+|+|.|+| .+++|.|+|||+|++.||+.||..|+.
T Consensus 36 h~~~F~~~v~i~~-~~~~G~G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 36 HMKNFITACIVGS-IVTEGEGNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp SCSCSSEEEEETT-EEEEECCCSTTSSSHHHHHHHHHHHTT
T ss_pred CCCcEEEEEEECC-EEEEEeeCCHHHHHHHHHHHHHHHHhh
Confidence 3578999999999 889999999999999999999999875
No 49
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=98.12 E-value=2.3e-06 Score=84.67 Aligned_cols=67 Identities=18% Similarity=0.089 Sum_probs=50.0
Q ss_pred CCCChHHHHHhhcccc-CcccCCccccCCCEEEEEEEECCeEEEEEEe-CCHHHHHHHHHHHHHHHhhhc
Q psy15484 1160 VPKSPIRELLELEPEN-ARFSKPEKLADGRRVRVTVEVFGKGSYKGIG-RNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1160 ~pk~pl~eL~e~~~~~-~~f~~~~~~~~~~~~~v~V~V~g~~~~~G~G-~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+||+.|+|+.|..... +.|..... .+.+.|+|.|.|+|..++.|.| +|||+||+.||+.||+.|+..
T Consensus 27 d~Kt~LQE~~Qk~~~~~P~Y~~v~~-~H~~~F~v~V~v~g~~~g~G~G~~SKK~AEQ~AA~~AL~~L~~~ 95 (128)
T 1whn_A 27 TPKMCLLEWCRREKLPQPVYETVQR-TIDRMFCSVVTVAEQKYQSTLWDKSKKLAEQTAAIVCLRSQGLP 95 (128)
T ss_dssp CHHHHHHHHHHHTTCCCCCCCEEEC-SSSCCEEEEEEETTEEEEESSCBSSHHHHHHHHHHHHHHHHTCS
T ss_pred CHHHHHHHHHHHcCCCCCeEEEEee-cCCCcEEEEEEECCEEEEEEeccCCHHHHHHHHHHHHHHHHhcc
Confidence 4566666666643321 12322222 4568899999999999999999 999999999999999999743
No 50
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=98.10 E-value=3.8e-06 Score=80.19 Aligned_cols=70 Identities=21% Similarity=0.093 Sum_probs=52.5
Q ss_pred CCCCChHHHHHhhcccc-CcccCCcc-ccCCCEEEEEEEECCeEEEEEEe-CCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1159 SVPKSPIRELLELEPEN-ARFSKPEK-LADGRRVRVTVEVFGKGSYKGIG-RNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~-~~f~~~~~-~~~~~~~~v~V~V~g~~~~~G~G-~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
.+||+.|+|+.+..... +.|..... ..+.+.|+|.|.|+|..++.|.| +|||.||+.||+.||+.|....
T Consensus 17 ~d~Kt~LqE~~Q~~~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 17 YVFKSRLQEYAQKYKLPTPVYEIVKEGPSHKSLFQSTVILDGVRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp --CTTHHHHHHHHTTCCCCEEEEEEESCSSSCEEEEEEEETTEEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCCeEEEEeEcCCCCCeEEEEEEECCEEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 46899999988865322 12222111 12457899999999999999999 9999999999999999997654
No 51
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=98.07 E-value=6.1e-06 Score=73.35 Aligned_cols=65 Identities=29% Similarity=0.381 Sum_probs=48.8
Q ss_pred CCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1161 PKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
.++|+..|.+++.. ..|..... ..+.+.|+|+|.|+|.. ++|.|+|||+||+.||+.||+.|...
T Consensus 3 ~knp~s~L~E~~~~-p~Y~~~~~~Gp~h~~~F~~~v~v~~~~-~~G~G~SKK~Aeq~AA~~al~~L~~~ 69 (71)
T 2b7v_A 3 GKNPVMILNELRPG-LKYDFLSESGESHAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 69 (71)
T ss_dssp SSCHHHHHHHHCCS-CEEEEEECCCCTTTCCEEEEEECSSCE-EEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHhCCC-CEEEEEEeECCCCCceEEEEEEECCEE-EEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 46778888777532 33332211 23457899999999985 69999999999999999999998753
No 52
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=98.05 E-value=9.3e-06 Score=78.63 Aligned_cols=67 Identities=27% Similarity=0.306 Sum_probs=50.5
Q ss_pred CCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcCC
Q psy15484 1161 PKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~~ 1229 (1233)
.+++...|+|+++. ..|..... ..+.+.|+|.|.|+|... .|.|+|||+||+.||+.||+.|.....
T Consensus 36 ~kd~Ks~LQE~~q~-p~Y~~v~~~Gp~H~k~F~v~V~v~g~~~-~G~G~SKK~AEq~AA~~AL~~L~~~~~ 104 (114)
T 2ljh_A 36 PKNTVAMLNELRHG-LIYKLESQTGPVHAPLFTISVEVDGQKY-LGQGRSKKVARIEAAATALRSFIQFKD 104 (114)
T ss_dssp CSCHHHHHHHHCSC-CEEEEEEEECCSSSCEEEEEEEETTEEE-EEEESSHHHHHHHHHHHHHHHHCCCTT
T ss_pred CCCHHHHHHHHccC-CeEEEEEeeCCCCCCeEEEEEEECCEEE-EeeeCCHHHHHHHHHHHHHHHHHcCCC
Confidence 45666677776654 33332211 124678999999999988 999999999999999999999976543
No 53
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=97.94 E-value=7.3e-06 Score=79.49 Aligned_cols=66 Identities=12% Similarity=0.115 Sum_probs=49.0
Q ss_pred CCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEE-----CCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1161 PKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEV-----FGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V-----~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
||+.|+|++|.....+.|. ... ..+.+.|+|.|.| +++.++.|.|+|||+|++.||+.||+.|...
T Consensus 28 ~Kt~LqE~~Qk~~~~p~Y~-~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~G~SKK~AEq~AA~~AL~~L~~~ 100 (113)
T 1uil_A 28 AKARLNQYFQKEKIQGEYK-YTQVGPDHNRSFIAEMTIYIKQLGRRIFAREHGSNKKLAAQSCALSLVRQLYHL 100 (113)
T ss_dssp HHHHHHHHHHHSCCCCCCE-EEEESCSTTCEEEEEEEEEETTTTEEEEEECCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCCeEE-EeeECCCCCCcEEEEEEEeeeccCCEEEEEEeeCCHHHHHHHHHHHHHHHHHhc
Confidence 5667777776543322332 111 1246789999999 5788899999999999999999999999754
No 54
>4f3t_A Protein argonaute-2; hydrolase/gene regulation, RNAI, slicer, hydrolase-RNA; 2.25A {Homo sapiens} PDB: 4ei1_A 4ei3_A* 1r4k_A 1si2_A 1si3_A
Probab=97.73 E-value=2.2e-05 Score=100.56 Aligned_cols=90 Identities=17% Similarity=0.179 Sum_probs=64.7
Q ss_pred ccccCcEEeccccCCCCCeEEEEEeecCCCCCCCCCCC--CCC--CccCHHHHHHhhhCccccCCCCceEEecccccccc
Q psy15484 299 SKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPS--RTN--TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLN 374 (1233)
Q Consensus 299 ~~~~~~VV~p~Y~n~d~~~~Y~V~~V~~dltP~S~Fp~--~~~--~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~N 374 (1233)
..++|..|.+.|.+ ...++|.|.+|.++-.....|+. ..+ ..+|++|||+++||+.|.+++||+|.+.
T Consensus 262 k~LkGl~V~~t~~~-~~~r~yrI~~i~~~pa~~~~F~~~~~~g~~~~iSV~dYFk~kYni~L~~p~lPll~~g------- 333 (861)
T 4f3t_A 262 KEIKGLKVEITHCG-QMKRKYRVCNVTRRPASHQTFPLQQESGQTVECTVAQYFKDRHKLVLRYPHLPCLQVG------- 333 (861)
T ss_dssp HHHTTCEEEESCC----CCEEEEEEEEEEETTTCEEEEECSSSCEEEEEHHHHHHHHHCCCCSCTTSEEEEES-------
T ss_pred HHhCCcEEEEeecC-CCCceEEEeeCCCCCCCCcEEEeecCCCCceeEEHHHHHHHhcCcccCCCCCceEEec-------
Confidence 46889988766632 12378999999864444445841 122 3689999999999999999999999551
Q ss_pred cccccccccccccccCCcHHHHHhhhhcCCccEEEcccccccc-------cCcHHH
Q psy15484 375 FLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIH-------PFPASL 423 (1233)
Q Consensus 375 lL~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~-------~ipas~ 423 (1233)
. ....+|||||||.+. ++++..
T Consensus 334 -----------~----------------~~~~~ylP~Elc~i~~gQ~~~~~Lt~~q 362 (861)
T 4f3t_A 334 -----------Q----------------EQKHTYLPLEVCNIVAGQRCIKKLTDNQ 362 (861)
T ss_dssp -----------C----------------TTTTEEEEGGGEEECTTCBCCSCCCHHH
T ss_pred -----------C----------------CCCCccccceeEEeeCCccccccCCHHH
Confidence 0 023589999999986 677664
No 55
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=97.60 E-value=6.2e-05 Score=82.10 Aligned_cols=66 Identities=21% Similarity=0.119 Sum_probs=48.8
Q ss_pred CCChHHHHHhhccccCcccCCccc-----cCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1161 PKSPIRELLELEPENARFSKPEKL-----ADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1161 pk~pl~eL~e~~~~~~~f~~~~~~-----~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
.++|+..|.+++++.. ...+.|. ...+.|+|.|.|+|..++.|.|+|||.||+.||+.||..|...
T Consensus 21 ~kd~ks~LqE~~q~~~-~~~p~Y~~~~~~Gp~~~F~~~v~v~g~~~~~G~G~SKK~Aeq~AA~~aL~~L~~~ 91 (232)
T 2yt4_A 21 GKSEVCILHEYMQRVL-KVRPVYNFFECENPSEPFGASVTIDGVTYGSGTASSKKLAKNKAARATLEILIPD 91 (232)
T ss_dssp TSCHHHHHHHHHHHTT-CCCCEEEEEECSCTTSCEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCCHHHHHHHHHHHcC-CCCCeEEEEeeECCCCcEEEEEEECCEEEeecCCCCHHHHHHHHHHHHHHHHHhh
Confidence 4666666666555431 2223221 1127899999999999999999999999999999999999763
No 56
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=97.55 E-value=2.2e-05 Score=82.26 Aligned_cols=42 Identities=33% Similarity=0.323 Sum_probs=38.4
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+.+.|+|.|.|+|..+++|.|+|||+||+.||+.||+.|...
T Consensus 42 h~~~F~~~v~v~g~~~~~G~G~sKK~Aeq~AA~~al~~L~~~ 83 (179)
T 1qu6_A 42 HDRRFTFQVIIDGREFPEGEGRSKKEAKNAAAKLAVEILNKE 83 (179)
T ss_dssp TBCCEEEEEESSSSCCCEEECCSSHHHHHHHHHHHHHHHHSC
T ss_pred CCCeEEEEEEECCEEEEecCCCCHHHHHHHHHHHHHHHHhcc
Confidence 346799999999998999999999999999999999999754
No 57
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=97.42 E-value=0.00014 Score=79.62 Aligned_cols=67 Identities=25% Similarity=0.334 Sum_probs=51.9
Q ss_pred CCCCChHHHHHhhccccCcccCCcc--ccCCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1159 SVPKSPIRELLELEPENARFSKPEK--LADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~~~f~~~~~--~~~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
..+|++|++|.+.+. ...|..... ..+.+.|+|.|.|+|.. +.|.|+|||.||+.||+.||+.|...
T Consensus 4 ~~~K~~l~~l~e~~~-~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-~~G~G~SKK~Aeq~AA~~al~~l~~~ 72 (236)
T 2l3j_A 4 VLPKNALMQLNEIKP-GLQYMLLSQTGPVHAPLFVMSVEVNGQV-FEGSGPTKKKAKLHAAEKALRSFVQF 72 (236)
T ss_dssp CCTHHHHHHHHHHCS-SCEEEEEEEESCTTSCEEEEEEEETTEE-EEEEESHHHHHHHHHHHHHHHHHTTC
T ss_pred CCCcCHHHHHhhcCC-CceEEEEeccCCCCCCeEEEEEEECCEE-EEEecCChHHHHHHHHHHHHHHHHhc
Confidence 357999999998642 233333221 13468999999999987 69999999999999999999999764
No 58
>1u04_A Argonaute, hypothetical protein PF0537; RNAI, silencing, PIWI, PAZ, RISC, slicer, RNAse H hydrolase-gene regulation complex; 2.25A {Pyrococcus furiosus} SCOP: b.34.14.1 c.55.3.10 PDB: 1z25_A 1z26_A
Probab=97.37 E-value=5e-06 Score=104.18 Aligned_cols=77 Identities=14% Similarity=0.166 Sum_probs=50.8
Q ss_pred eEEEEEeecCCCCCCC--CC---CCCC-CCccCHHHHHHhhhCccccCCCCceEEecccccccccccccccccccccccC
Q psy15484 317 TYFYVAEIMTNVHPRS--MF---PSRT-NTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAT 390 (1233)
Q Consensus 317 ~~Y~V~~V~~dltP~S--~F---p~~~-~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL~~r~~~~~g~~~~~ 390 (1233)
++|.+.+ ++|.+|.| .| .... -+..+|.+||+++|++ .|.+||||-.+..
T Consensus 196 ~~Y~~~~-~~d~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~y~i--~d~~QPllvs~~~--------------------- 251 (771)
T 1u04_A 196 EEYTKKP-KLDHNQEIVKYWYNYHIERYWNTPEAKLEFYRKFGQ--VDLKQPAILAKFA--------------------- 251 (771)
T ss_dssp CTTSSCB-CEECCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHCS--CCTTSCEEEEEES---------------------
T ss_pred ceeecCC-ccccCCCChhheeceeecCCCCCcchhHHHHHhcCc--CcCCCCeEEecch---------------------
Confidence 5666666 77888888 66 4211 0446888888899995 8999999933210
Q ss_pred CcHHHHHhhhhcCCccEEEcccccccccCcHHH
Q psy15484 391 TSEETRREIRESLGKKQLLVPELCLIHPFPASL 423 (1233)
Q Consensus 391 ~s~~~~~~~~~~~~~~~~LvPELC~i~~ipas~ 423 (1233)
+| .+.+.++.++||||||.++|.+..+
T Consensus 252 -----~~-~~~~~~~~i~LiPELc~~TG~~~~~ 278 (771)
T 1u04_A 252 -----SK-IKKNKNYKIYLLPQLVVPTYNAEQL 278 (771)
T ss_dssp -----CC------CCCEEECTTTEEEEEEGGGC
T ss_pred -----hh-ccCCCCceeeechHhhhhcCchhhh
Confidence 00 0112356799999999999976554
No 59
>1qu6_A Protein kinase PKR; dsRNA-binding domain, solution structure, transferase; NMR {Homo sapiens} SCOP: d.50.1.1 d.50.1.1
Probab=97.04 E-value=0.00041 Score=72.63 Aligned_cols=43 Identities=23% Similarity=0.083 Sum_probs=38.7
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
+.+.|+++|.|+|..++.|.|.|||+||+.||+.||..|....
T Consensus 132 h~~~F~~~v~v~~~~~~~g~g~sKK~Ak~~AA~~al~~L~~~~ 174 (179)
T 1qu6_A 132 GPEGFHYKCKMGQKEYSIGTGSTKQEAKQLAAKLAYLQILSEE 174 (179)
T ss_dssp SSSEEEEEEEEETTBCCEEEESSHHHHHHHHHHHHHHHHHHCC
T ss_pred CCCeEEEEEEECCEEEeeEEECCHHHHHHHHHHHHHHHHhccc
Confidence 3468999999999988999999999999999999999997544
No 60
>2l3j_A Double-stranded RNA-specific editase 1; editing, dsRNA recognition, DSRBM, hydrolase-RNA complex; NMR {Rattus norvegicus}
Probab=96.87 E-value=0.0015 Score=71.42 Aligned_cols=41 Identities=32% Similarity=0.393 Sum_probs=37.0
Q ss_pred CCCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1186 DGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1186 ~~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
+.+.|+|.|.|+|.. +.|.|+|||+||+.||+.||..|...
T Consensus 186 h~~~F~~~v~v~~~~-~~G~G~sKK~Aeq~AA~~al~~L~~~ 226 (236)
T 2l3j_A 186 HAKSFVMSVVVDGQF-FEGSGRNKKLAKARAAQSALATVFNL 226 (236)
T ss_dssp SSCCEEEEEEETTEE-EEEEESSHHHHHHHHHHHHHHHHTTC
T ss_pred CCCeEEEEEEECCEE-EEeeeCCHHHHHHHHHHHHHHHHccc
Confidence 457899999999985 69999999999999999999999754
No 61
>1uil_A Double-stranded RNA-binding motif; structural genomics, DSRM, riken structural genomics/proteomics initiative, RSGI RNA binding protein; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs7_A
Probab=96.42 E-value=0.0075 Score=58.35 Aligned_cols=79 Identities=22% Similarity=0.229 Sum_probs=55.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccc-cCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSV-TGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i-~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..+.|+.||++.- . .|.|.+...+..-...|+|+|.++.-..=...+ .|. -+|||.|+|.||..|+.+|.+
T Consensus 27 d~Kt~LqE~~Qk~~-----~-~p~Y~~~~~Gp~H~~~F~~~V~v~~~~~~~~~~~~G~-G~SKK~AEq~AA~~AL~~L~~ 99 (113)
T 1uil_A 27 NAKARLNQYFQKEK-----I-QGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH-GSNKKLAAQSCALSLVRQLYH 99 (113)
T ss_dssp HHHHHHHHHHHHSC-----C-CCCCEEEEESCSTTCEEEEEEEEEETTTTEEEEEECC-CSSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHCC-----C-CCeEEEeeECCCCCCcEEEEEEEeeeccCCEEEEEEe-eCCHHHHHHHHHHHHHHHHHh
Confidence 46789999999852 2 588885443322345899999997210000112 343 379999999999999999999
Q ss_pred cCcccCC
Q psy15484 82 LKELDND 88 (1233)
Q Consensus 82 ~GeLdd~ 88 (1233)
.|.+..+
T Consensus 100 ~~~ie~~ 106 (113)
T 1uil_A 100 LGVIEAY 106 (113)
T ss_dssp HTSSCCC
T ss_pred cCCcccc
Confidence 9888755
No 62
>1whq_A RNA helicase A; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI, structural genomics; NMR {Mus musculus} SCOP: d.50.1.1 PDB: 2rs6_A
Probab=96.28 E-value=0.018 Score=54.43 Aligned_cols=80 Identities=16% Similarity=0.246 Sum_probs=58.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhc
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYEL 82 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~ 82 (1233)
+..+.|+.||++. . ..|+|.+...+......|+|+|++-..--+ ..=.| +|||.|+|.||-.|+..|.+.
T Consensus 7 d~Kt~LqE~~Qk~-~-----~~P~Y~~~~~Gp~H~~~F~~~V~v~g~~~~-~~G~G---~SKK~Aeq~AA~~AL~~L~~~ 76 (99)
T 1whq_A 7 GIKNFLYAWCGKR-K-----MTPAYEIRAVGNKNRQKFMCEVRVEGFNYA-GMGNS---TNKKDAQSNAARDFVNYLVRI 76 (99)
T ss_dssp SSHHHHHHHHHHT-T-----CCCEEEEEEEECSSSEEEEEEEECTTCSCC-EEEEE---SSHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHC-C-----CCCeEEEeeecCCCCCeEEEEEEECCeEEE-EEecc---CCHHHHHHHHHHHHHHHHHhh
Confidence 4578999999996 3 458998843332234689999998641111 11134 799999999999999999999
Q ss_pred CcccCCCccc
Q psy15484 83 KELDNDLMPV 92 (1233)
Q Consensus 83 GeLdd~LlP~ 92 (1233)
|.++..=+|.
T Consensus 77 ~~~~~~~~P~ 86 (99)
T 1whq_A 77 NEVKSEEVPA 86 (99)
T ss_dssp TSSCTTTSCC
T ss_pred CCCCcccCCC
Confidence 9887655565
No 63
>3adg_A F21M12.9 protein; HYL1, miRNA processing mechanism, RNA binding protein, gene regulation; 1.70A {Arabidopsis thaliana} PDB: 3adi_A
Probab=96.11 E-value=0.018 Score=51.03 Aligned_cols=69 Identities=17% Similarity=0.068 Sum_probs=50.8
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+..+.|+.||++. ....|.|.+...+......|+|+|.+-. +..-.|.-.+||+.|++.||..|...|-
T Consensus 4 d~Kt~LqE~~q~~-----~~~~p~Y~~~~~Gp~h~~~F~~~v~v~g----~~~~~G~G~~sKK~Aeq~AA~~al~~L~ 72 (73)
T 3adg_A 4 VFKSRLQEYAQKY-----KLPTPVYEIVKEGPSHKSLFQSTVILDG----VRYNSLPGFFNRKAAEQSAAEVALRELA 72 (73)
T ss_dssp SHHHHHHHHHHHT-----TCCCCEEEEEEESSTTSCEEEEEEEETT----EEEECCSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHc-----CCCCCEEEEEeECCCCCCeEEEEEEECC----EEEEeeeccCCHHHHHHHHHHHHHHHhh
Confidence 4678999999985 2246899887643223468999999864 1112555557999999999999999884
No 64
>2b7v_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l2k_B
Probab=95.96 E-value=0.02 Score=50.59 Aligned_cols=65 Identities=20% Similarity=0.140 Sum_probs=48.4
Q ss_pred cchHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 2 DNAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 2 ~SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
.+.+++|+.|| ..|.|.+....+ .....|+|+|.+-.. . ..|. -+|||.|+|.||..|+.+|.
T Consensus 4 knp~s~L~E~~----------~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~-~----~~G~-G~SKK~Aeq~AA~~al~~L~ 67 (71)
T 2b7v_A 4 KNPVMILNELR----------PGLKYDFLSESGESHAKSFVMSVVVDGQ-F----FEGS-GRNKKLAKARAAQSALATVF 67 (71)
T ss_dssp SCHHHHHHHHC----------CSCEEEEEECCCCTTTCCEEEEEECSSC-E----EEEE-ESSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC----------CCCEEEEEEeECCCCCceEEEEEEECCE-E----EEEe-eCCHHHHHHHHHHHHHHHHH
Confidence 36799999996 467888755322 224589999999763 1 2343 37999999999999999997
Q ss_pred hc
Q psy15484 81 EL 82 (1233)
Q Consensus 81 ~~ 82 (1233)
..
T Consensus 68 ~~ 69 (71)
T 2b7v_A 68 NL 69 (71)
T ss_dssp HH
T ss_pred hc
Confidence 53
No 65
>2l2n_A Hyponastic leave 1; DSRBD, miRNA, RNA binding protein, plant protein; NMR {Arabidopsis thaliana}
Probab=95.80 E-value=0.022 Score=54.09 Aligned_cols=76 Identities=18% Similarity=0.093 Sum_probs=53.1
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcC
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELK 83 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~G 83 (1233)
..+.|+.||++. ....|.|.+...+......|+|+|.+-. +..-.|.-.+|||.|++.||..|...|.+.+
T Consensus 19 ~Kt~LqE~~Q~~-----~~~~P~Y~~~~~Gp~H~~~F~~~V~v~g----~~~~~G~G~~SKK~Aeq~AA~~AL~~L~~~~ 89 (103)
T 2l2n_A 19 FKSRLQEYAQKY-----KLPTPVYEIVKEGPSHKSLFQSTVILDG----VRYNSLPGFFNRKAAEQSAAEVALRELAKSS 89 (103)
T ss_dssp CTTHHHHHHHHT-----TCCCCEEEEEEESCSSSCEEEEEEEETT----EEEECCSCBSSHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHc-----CCCCCeEEEEeEcCCCCCeEEEEEEECC----EEEEEeecCCCHHHHHHHHHHHHHHHHhccc
Confidence 467899999885 2356899887643223468999999864 1112455447999999999999999999887
Q ss_pred cccCC
Q psy15484 84 ELDND 88 (1233)
Q Consensus 84 eLdd~ 88 (1233)
.+-+.
T Consensus 90 ~~~~~ 94 (103)
T 2l2n_A 90 ELSQC 94 (103)
T ss_dssp -----
T ss_pred ccccc
Confidence 76653
No 66
>2yt4_A Protein DGCR8; DSRBD, RNA binding domain, RNA binding protein; 2.60A {Homo sapiens}
Probab=95.63 E-value=0.013 Score=63.89 Aligned_cols=38 Identities=18% Similarity=0.174 Sum_probs=32.0
Q ss_pred CCEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1187 GRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1187 ~~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
...|+|+|. ...+.|.|+|||.||+.||+.||..|...
T Consensus 162 ~~~F~~~v~---~~~~~G~G~sKK~Aeq~AA~~aL~~L~~~ 199 (232)
T 2yt4_A 162 KSEYVMACG---KHTVRGWCKNKRVGKQLASQKILQLLHPH 199 (232)
T ss_dssp CEEEEEEET---TEEEEEEESSHHHHHHHHHHHHHHHHSTT
T ss_pred CCEEEEEEE---EEEEEEEeCCHHHHHHHHHHHHHHHHHhh
Confidence 356777664 66799999999999999999999999753
No 67
>1di2_A XLRBPA, double stranded RNA binding protein A; protein-RNA complex, protein-RNA interactions, RNA-bining protein; 1.90A {Xenopus laevis} SCOP: d.50.1.1
Probab=95.58 E-value=0.024 Score=49.63 Aligned_cols=66 Identities=18% Similarity=0.131 Sum_probs=48.5
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecCC-CceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~-~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
.++.|+.||++. ....|.|.+....+. ....|+|+|.+... + -.| .-+||+.|++.||..|...|.
T Consensus 2 p~s~LqE~~q~~-----~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~~~--~---~~G-~G~sKK~Aeq~AA~~al~~L~ 68 (69)
T 1di2_A 2 PVGSLQELAVQK-----GWRLPEYTVAQESGPPHKREFTITCRVETF--V---ETG-SGTSKQVAKRVAAEKLLTKFK 68 (69)
T ss_dssp HHHHHHHHHHHH-----TCCCCEEEEEEEESCGGGCEEEEEEEETTE--E---EEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHc-----CCCCCEEEEEEeECCCCCCeEEEEEEECCE--E---EEe-ecCCHHHHHHHHHHHHHHHHh
Confidence 478999999885 224589987654322 24579999999762 2 233 237999999999999999885
No 68
>3adj_A F21M12.9 protein; HYL1, miRNA processing, RNA binding protein, gene regulation; 3.00A {Arabidopsis thaliana} PDB: 2l2m_A
Probab=95.56 E-value=0.052 Score=48.56 Aligned_cols=68 Identities=15% Similarity=0.159 Sum_probs=49.7
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+..+.|+.||++. ....|.|.+....+ .....|+|+|.+... ..-.|. -+||+.|++.||..|...|.
T Consensus 5 n~Kt~LqE~~q~~-----~~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~----~~~~G~-G~sKK~Aeq~AA~~al~~L~ 73 (76)
T 3adj_A 5 LCKNLLQEYAQKM-----NYAIPLYQCQKVETLGRVTQFTCTVEIGGI----KYTGAA-TRTKKDAEISAGRTALLAIQ 73 (76)
T ss_dssp HHHHHHHHHHHTT-----TCCCCEEEEEEEECSSSCEEEEEEEEETTE----EEECCC-BSSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHh-----CCCCCeEEEeeccCCCCCCcEEEEEEECCE----EEEEec-cCCHHHHHHHHHHHHHHHHh
Confidence 5678999999985 22468998765322 234689999999641 111343 48999999999999999985
No 69
>2dix_A Interferon-inducible double stranded RNA- dependent protein kinase activator A; structure genomics, DSRM domain, hypothetical protein PRKRA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=95.16 E-value=0.055 Score=49.40 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=50.8
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+.++.|+.||++. . ..|.|.+....+ .....|+|+|++-. +. -.|. -+|||.|++.||..|..+|.+
T Consensus 9 d~Ks~LqE~~q~~----~--~~p~Y~~~~~~Gp~h~~~F~~~v~v~~---~~--~~G~-G~SKK~Aeq~AA~~aL~~L~~ 76 (84)
T 2dix_A 9 TPIQVLHEYGMKT----K--NIPVYECERSDVQIHVPTFTFRVTVGD---IT--CTGE-GTSKKLAKHRAAEAAINILKA 76 (84)
T ss_dssp CHHHHHHHHHHHT----T--CCCEEEEEEEECSSSSCEEEEEEEETT---EE--EEEC-SSCTTHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc----C--CCCeEEEEEeECCCCCCeEEEEEEECC---EE--EEee-eCCHHHHHHHHHHHHHHHHhc
Confidence 5689999999986 1 368998765322 22457999999964 22 2343 379999999999999999975
Q ss_pred cC
Q psy15484 82 LK 83 (1233)
Q Consensus 82 ~G 83 (1233)
..
T Consensus 77 ~~ 78 (84)
T 2dix_A 77 NA 78 (84)
T ss_dssp TC
T ss_pred cc
Confidence 44
No 70
>3adl_A RISC-loading complex subunit tarbp2; TRBP2, miRNA processing, gene regulation-RNA complex; 2.20A {Homo sapiens}
Probab=95.06 E-value=0.058 Score=49.73 Aligned_cols=68 Identities=18% Similarity=0.092 Sum_probs=50.3
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..+.|+.||++.- ...|+|.+....+ .-...|+|+|.+-.. + -.| .-+|||.|++.||..|...|-+
T Consensus 16 d~Ks~LqE~~Q~~~-----~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~--~---~~G-~G~SKK~Aeq~AA~~AL~~L~~ 84 (88)
T 3adl_A 16 HEVGALQELVVQKG-----WRLPEYTVTQESGPAHRKEFTMTCRVERF--I---EIG-SGTSKKLAKRNAAAKMLLRVHT 84 (88)
T ss_dssp CHHHHHHHHHHHTT-----CCCCEEEEEEEESCTTSCEEEEEEEETTE--E---EEE-EESSHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHcC-----CCCCEEEEEEeECCCCCCeEEEEEEECCE--E---EEE-eeCCHHHHHHHHHHHHHHHHHc
Confidence 56899999999862 2468998765432 224589999999752 2 233 2379999999999999999964
No 71
>3llh_A RISC-loading complex subunit tarbp2; DSRBD, DSRM, microrna, RNA binding protein; 2.14A {Homo sapiens}
Probab=94.91 E-value=0.04 Score=51.02 Aligned_cols=71 Identities=23% Similarity=0.223 Sum_probs=47.7
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..+.|+.||++- ...|.|.+....+ .....|+|+|.+-.. + ..| .-+|||.|++.||-.|..+|..
T Consensus 15 d~Ks~LqE~~q~~------~~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~--~---~~G-~G~SKK~Aeq~AA~~aL~~L~~ 82 (90)
T 3llh_A 15 TPISLLQEYGTRI------GKTPVYDLLKAEGQAHQPNFTFRVTVGDT--S---CTG-QGPSKKAAKHKAAEVALKHLKG 82 (90)
T ss_dssp CHHHHHHHHHHHT------TCCCEEEEEEEC-----CCEEEEEEETTE--E---EEE-EESSHHHHHHHHHHHHHHHHC-
T ss_pred CHHHHHHHHHHhc------CCCCEEEEEEeECCCCCCcEEEEEEECCE--E---EEE-EeCCHHHHHHHHHHHHHHHHHh
Confidence 5789999999874 1359998754322 223479999999742 1 233 2379999999999999999987
Q ss_pred cCcc
Q psy15484 82 LKEL 85 (1233)
Q Consensus 82 ~GeL 85 (1233)
.+.+
T Consensus 83 ~~~~ 86 (90)
T 3llh_A 83 GSML 86 (90)
T ss_dssp ----
T ss_pred cccc
Confidence 7765
No 72
>2cpn_A TAR RNA-binding protein 2; double-stranded RNA binding domain, DSRBD, DSRM., structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=94.70 E-value=0.065 Score=49.51 Aligned_cols=67 Identities=19% Similarity=0.113 Sum_probs=49.6
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+.+++|+.||++. ....|+|.+....+ .....|+|+|++... + -.| .-+||+.|++.||..|...|.
T Consensus 17 d~Kt~LqE~~Qk~-----~~~~P~Y~~~~~~Gp~h~~~F~~~v~i~g~--~---~~G-~G~SKK~Aeq~AA~~AL~~L~ 84 (89)
T 2cpn_A 17 NPVGALQELVVQK-----GWRLPEYTVTQESGPAHRKEFTMTCRVERF--I---EIG-SGTSKKLAKRNAAAKMLLRVS 84 (89)
T ss_dssp CHHHHHHHHHHHH-----TCCCCEEEEEEEECCSSSCEEEEEEEETTE--E---EEE-EESSHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHc-----CCCCCeEEEEeeECCCCCCeEEEEEEECCE--E---EEe-eeCCHHHHHHHHHHHHHHHHH
Confidence 5689999999985 22458898765322 224589999999762 2 233 237999999999999999986
No 73
>2b7t_A Double-stranded RNA-specific editase 1; RNA editing, RNA-binding protein, hydrolase; NMR {Rattus norvegicus} SCOP: d.50.1.1 PDB: 2l3c_A
Probab=94.63 E-value=0.088 Score=46.65 Aligned_cols=66 Identities=17% Similarity=0.036 Sum_probs=49.3
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..+.|+.||+. ...|.|.+....+ .....|+|+|.+-... ..| .-+||+.|++.||-.|+..|.+
T Consensus 5 d~Ks~Lqe~~q~-------~~~p~Y~~~~~~Gp~h~~~F~~~v~v~g~~-----~~G-~G~SKK~Aeq~AA~~al~~L~~ 71 (73)
T 2b7t_A 5 LPKNALMQLNEI-------KPGLQYMLLSQTGPVHAPLFVMSVEVNGQV-----FEG-SGPTKKKAKLHAAEKALRSFVQ 71 (73)
T ss_dssp SSHHHHHHHHHH-------CSCCEEEEEEEECSSSSCEEEEEEESSSSE-----EEE-EESSHHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHcC-------CCCceEEEEEeeCCCCCCeEEEEEEECCEE-----EEe-ecCCHHHHHHHHHHHHHHHHhc
Confidence 456889999995 3568998765322 2245899999997532 234 2479999999999999999975
No 74
>2ljh_A Double-stranded RNA-specific editase ADAR; DSRBD, DSRBM, editing, hydrolase; NMR {Drosophila melanogaster}
Probab=94.61 E-value=0.058 Score=52.14 Aligned_cols=67 Identities=21% Similarity=0.187 Sum_probs=49.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..++|+.||++ |+|.+....+ .-...|+|+|.+-.. . +.|. -+|||.|+|.||-.|+.+|.+
T Consensus 38 d~Ks~LQE~~q~----------p~Y~~v~~~Gp~H~k~F~v~V~v~g~-~----~~G~-G~SKK~AEq~AA~~AL~~L~~ 101 (114)
T 2ljh_A 38 NTVAMLNELRHG----------LIYKLESQTGPVHAPLFTISVEVDGQ-K----YLGQ-GRSKKVARIEAAATALRSFIQ 101 (114)
T ss_dssp CHHHHHHHHCSC----------CEEEEEEEECCSSSCEEEEEEEETTE-E----EEEE-ESSHHHHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHccC----------CeEEEEEeeCCCCCCeEEEEEEECCE-E----EEee-eCCHHHHHHHHHHHHHHHHHc
Confidence 467899999973 8898765332 234589999999752 1 2333 279999999999999999976
Q ss_pred cCcc
Q psy15484 82 LKEL 85 (1233)
Q Consensus 82 ~GeL 85 (1233)
.+..
T Consensus 102 ~~~~ 105 (114)
T 2ljh_A 102 FKDG 105 (114)
T ss_dssp CTTC
T ss_pred CCCC
Confidence 5543
No 75
>1uhz_A Staufen (RNA binding protein) homolog 2; DSRM, staufen homolog 2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=94.53 E-value=0.097 Score=48.33 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=49.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCC-CceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~-~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+.++.|+.||++. ....|.|.+....+. ....|+|+|.+-.. + -.|. -+||+.|++.||..|..+|.
T Consensus 7 d~Kt~LqE~~Q~~-----~~~~P~Y~~~~~~Gp~H~~~F~~~v~v~g~--~---~~G~-G~SKK~Aeq~AA~~AL~~L~ 74 (89)
T 1uhz_A 7 GPISRLAQIQQAR-----KEKEPDYILLSERGMPRRREFVMQVKVGNE--V---ATGT-GPNKKIAKKNAAEAMLLQLG 74 (89)
T ss_dssp CHHHHHHHHHHHT-----TSCCCEEEEEEEESCSTTCEEEEEEEETTE--E---EEEE-ESSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHh-----CCCCCeEEEEEeECCCCCCeEEEEEEECCE--E---EEEe-eCCHHHHHHHHHHHHHHHHh
Confidence 5689999999985 224589987654322 24579999999642 2 2332 37999999999999999984
No 76
>2khx_A Ribonuclease 3; drosha, RNA binding domain, hydrolase, gene regulation, NUCL protein, gene regulation,nuclear protein; NMR {Homo sapiens}
Probab=94.41 E-value=0.043 Score=50.25 Aligned_cols=71 Identities=15% Similarity=0.106 Sum_probs=48.1
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHH
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVL 79 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~L 79 (1233)
..+.|..||++.....-....|.|.+....+ .-...|+|+|++... .+ -.|. -+||+.|++.||..|+..|
T Consensus 3 ~Kt~LQE~~Q~~~~~~~~~~~p~Y~~~~~~Gp~H~~~F~v~V~v~g~-~~---~~G~-G~SKK~AEq~AA~~AL~~L 74 (85)
T 2khx_A 3 PKSQLQQCCLTLRTEGKEPDIPLYKTLQTVGPSHARTYTVAVYFKGE-RI---GCGK-GPSIQQAEMGAAMDALEKY 74 (85)
T ss_dssp SCHHHHHHHHHCCCSSSCCCCCCEEECCCCCSSSCCCEEEEEEETTE-EC---CCEE-ESSHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhhcCCCCCceEEEEEeECCCCCCcEEEEEEECCE-EE---EEEe-eCCHHHHHHHHHHHHHHHH
Confidence 4688999999863322233568898754322 224579999999752 11 1232 3799999999999998766
No 77
>1x47_A DGCR8 protein; structural genomics, DSRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=93.99 E-value=0.089 Score=49.49 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=49.2
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+.++.|+.||++. ....|+|.+....+.+ ..|+|+|.+-.. ..-.|. -+||+.|++.||-.|...|.
T Consensus 17 d~Kt~LqE~~Q~~-----~~~~P~Y~~~~~~Gp~-~~F~~~V~v~g~----~~~~G~-G~SKK~Aeq~AA~~AL~~L~ 83 (98)
T 1x47_A 17 SEVCILHEYMQRV-----LKVRPVYNFFECENPS-EPFGASVTIDGV----TYGSGT-ASSKKLAKNKAARATLEILI 83 (98)
T ss_dssp CHHHHHHHHHHHH-----TCSCCEEEEEECSSSS-CCEEEEEEETTE----EEEEEE-ESSHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHc-----CCCCCeEEEEEeECCC-CcEEEEEEECCE----EEEEee-eCCHHHHHHHHHHHHHHHHH
Confidence 4678999999985 2356899876544334 689999998651 111332 37999999999999999884
No 78
>3p1x_A Interleukin enhancer-binding factor 3; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.90A {Homo sapiens}
Probab=93.99 E-value=0.12 Score=46.07 Aligned_cols=63 Identities=16% Similarity=0.121 Sum_probs=46.6
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCC-CceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKED-DSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~-~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+.|+.|+.+| ..|.|.+....+. -...|+|+|.+-.. . +.| .-+||+.|+|.||-.|+.+|..
T Consensus 8 ~pl~~L~q~~----------~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~-~----~~G-~G~SKK~Aeq~AA~~al~~L~~ 71 (75)
T 3p1x_A 8 NPVMELNEKR----------RGLKYELISETGGSHDKRFVMEVEVDGQ-K----FQG-AGSNKKVAKAYAALAALEKLFP 71 (75)
T ss_dssp CHHHHHHHHS----------TTCCEEEEEEESCTTSCEEEEEEEETTE-E----EEE-EESSHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHcC----------CCCEEEEEEeeCCCCCceEEEEEEECCE-E----EEE-EECCHHHHHHHHHHHHHHHHHc
Confidence 5789999996 3678987654322 24579999999642 2 334 2479999999999999999864
No 79
>1x49_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=93.83 E-value=0.2 Score=46.95 Aligned_cols=68 Identities=18% Similarity=0.075 Sum_probs=48.2
Q ss_pred cchHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 2 DNAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 2 ~SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
.+..+.|+.||++.- ..|.|.+....+ .....|+|+|.+-..- + ..=.| +|||.|+|.||..|..+|.
T Consensus 14 ~n~Kt~LqE~~Q~~~------~~p~Y~~~~~~Gp~H~~~F~v~v~i~g~~-~-~~G~G---~SKK~Aeq~AA~~AL~~L~ 82 (97)
T 1x49_A 14 GFYMDKLNKYRQMHG------VAITYKELSTSGPPHDRRFTFQVLIDEKE-F-PEAKG---RSKQEARNAAAKLAVDILD 82 (97)
T ss_dssp THHHHHHHHHHHHHT------CCEEEEEEEEESCSSSCEEEEEEEESSCC-C-CCEEE---SSHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHcC------CCCeEEEEEeeCCCCCCcEEEEEEECCEE-E-EEEee---CCHHHHHHHHHHHHHHHHH
Confidence 357899999999862 237888654322 2245799999986521 1 11234 7999999999999999985
No 80
>1ekz_A DSRBDIII, maternal effect protein (staufen); structure, protein/RNA, protein DSRBD, RNA hairpin; NMR {Drosophila melanogaster} SCOP: d.50.1.1 PDB: 1stu_A
Probab=93.60 E-value=0.026 Score=50.50 Aligned_cols=67 Identities=12% Similarity=-0.018 Sum_probs=48.5
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+.++.|+.||++.- .. |.|.+....+ .....|+|+|++.. +. -.|. -+||+.|++.||..|...|.+
T Consensus 8 d~ks~LqE~~q~~~-----~~-p~Y~~~~~~Gp~h~~~F~~~v~i~~---~~--~~G~-G~sKK~Aeq~AA~~aL~~L~~ 75 (76)
T 1ekz_A 8 SPISQVHEIGIKRN-----MT-VHFKVLREEGPAHMKNFITACIVGS---IV--TEGE-GNGKKVSKKRAAEKMLVELQK 75 (76)
T ss_dssp CHHHHHHHHHHHTT-----CC-CEEEESSSCCSSSCSCSSEEEEETT---EE--EEEC-CCSTTSSSHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHcC-----CC-CEEEEEEeECCCCCCcEEEEEEECC---EE--EEEe-eCCHHHHHHHHHHHHHHHHhh
Confidence 57899999999862 24 8898654322 12357999999953 32 2343 279999999999999998864
No 81
>2dmy_A Spermatid perinuclear RNA-binding protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.50.1.1
Probab=92.65 E-value=0.17 Score=47.41 Aligned_cols=64 Identities=13% Similarity=0.036 Sum_probs=47.8
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVL 79 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~L 79 (1233)
+..+.|+.||++- ..|.|.+....+ .....|+|+|.+-... +.| .-+|||.|++.||..|+.+|
T Consensus 17 d~Kt~LqE~~Q~~-------~~p~Y~~~~~~Gp~H~~~F~~~v~v~g~~-----~~G-~G~SKK~Aeq~AA~~aL~~L 81 (97)
T 2dmy_A 17 DLMNALMRLNQIR-------PGLQYKLLSQSGPVHAPVFTMSVDVDGTT-----YEA-SGPSKKTAKLHVAVKVLQAM 81 (97)
T ss_dssp SCTHHHHHHHHHS-------CSCCCEEEEEESCSSSCEEEEEEEETTEE-----EEE-EESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhcC-------CCceEEEEEeeCCCCCCeEEEEEEECCEE-----EEE-eeCCHHHHHHHHHHHHHHHh
Confidence 4568899999993 468888765322 2245899999997632 233 23799999999999999988
No 82
>3ho1_A Argonaute; argonaute, protein-DNA-RNA complex, nucleic acid binding Pro RNA complex; 2.60A {Thermus thermophilus} PDB: 3dlb_A* 3dlh_A* 3f73_A* 3hm9_A 3hvr_A 3hxm_A* 3hk2_A 3hjf_A
Probab=92.51 E-value=0.015 Score=71.92 Aligned_cols=162 Identities=10% Similarity=-0.053 Sum_probs=91.1
Q ss_pred CceeEEecCCCCCCCCcceeec--CcEEEEEEEEcCcc-eec-CHHHHHHHHHHHHHHHHHHhhccccceecCCCCCCCc
Q psy15484 177 QGLAILTTKYIPKVCSFPIFTR--CGEVEVSIELIDKN-VVL-SEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENS 252 (1233)
Q Consensus 177 ~~fglLt~k~LP~ip~FpLf~~--~g~~~V~l~~~~~~-i~l-t~eql~~l~~Fh~~lF~dVl~l~k~~~~fd~~~~~~~ 252 (1233)
-+-+|+|+++ |..-..-=-.+ .+.-.=+|.+.|.. +.. ++.+-+.|..|-++.....|+-.|...+ ..-.-
T Consensus 60 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 134 (685)
T 3ho1_A 60 MGDGLASWSP-PEVLVLEGTLARMGQTYAYRLYPKGRRPLDPKDPGERSVLSALARRLLQERLRRLEGVWV----EGLAV 134 (685)
T ss_dssp ETTEEEESSC-TTTSCCEEEEECSSCEEEEEEEEEEECCCCTTSHHHHHHHHHHHHHHHHHHHHTCSSSEE----ETTEE
T ss_pred ecCceecccC-chhhhccchhccccCCcceeeeecccccCCCCChHHHHHHHHHHHHHHHHHHHhhhceEE----ccEEE
Confidence 4558999888 54211111122 35666777777652 333 6789999999999999998874333212 12223
Q ss_pred EEEeeecCCC----------------CCceechhhhhhhhhccCCccCCChhhhhhcCccCcccccCcEEeccccCCCCC
Q psy15484 253 YFIVPTVSDS----------------EQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEP 316 (1233)
Q Consensus 253 YllvPl~~~~----------------~~~~IDW~~v~~v~~~~~~~~~~~~~~~~~~~~f~~~~~~~~VV~p~Y~n~d~~ 316 (1233)
+|.=++.... +...+--+...++... ..-.+..+.+.. +. ..|.+.|+.
T Consensus 135 ~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~l~vd~~~r~~~~------~~~~~~l~~~~~----~~-~~v~~~y~~---- 199 (685)
T 3ho1_A 135 YRREHARGPGWRVLGGAVLDLWVSDSGAFLLEVDPAYRILCE------MSLEAWLAQGHP----LP-KRVRNAYDR---- 199 (685)
T ss_dssp EEEEEEEETTEEEEEEEEEEEEECSSSEEEEEEEEEEEEEEC------SCHHHHHHHSCC----CC-SEEEESSSC----
T ss_pred EeecCCCCCceEEecceEEEEEECCCCcEEEEEeeheeecCh------hhHHHHHHhCCC----cc-HHHhhhccc----
Confidence 4433333210 1111111111111111 011112222211 45 778888863
Q ss_pred eEEEEEeecCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceE
Q psy15484 317 TYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364 (1233)
Q Consensus 317 ~~Y~V~~V~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL 364 (1233)
++|-+.+|. +.+|.|.|-.+ .+||+|||++||.+ .+.+||++
T Consensus 200 ~~~~~~~~~-~~~p~~~~l~~---~~s~~~y~~~k~~~--~~~~~~~v 241 (685)
T 3ho1_A 200 RTWELLRLG-EEDPKELPLPG---GLSLLDYHASKGRL--QGREGGRV 241 (685)
T ss_dssp CEECCCEEE-CCCTTCC---------CSTTTTTTTSTT--TTSCCCSE
T ss_pred ceEEEeecc-cCCchheecCC---CccHHHHHhhcccc--cccCCceE
Confidence 799999998 89999999662 69999999999888 88999998
No 83
>1whn_A Hypothetical protein riken cDNA 2310016K04; double-stranded RNA binding domain, DSRBD, DSRM, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.50.1.1
Probab=92.42 E-value=0.23 Score=48.91 Aligned_cols=67 Identities=16% Similarity=0.127 Sum_probs=49.1
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+..++|..||++. ....|+|.+... .....|+|+|.+.. +.--.|.-++||+.|+|.||-.|...|.
T Consensus 27 d~Kt~LQE~~Qk~-----~~~~P~Y~~v~~--~H~~~F~v~V~v~g----~~~g~G~G~~SKK~AEQ~AA~~AL~~L~ 93 (128)
T 1whn_A 27 TPKMCLLEWCRRE-----KLPQPVYETVQR--TIDRMFCSVVTVAE----QKYQSTLWDKSKKLAEQTAAIVCLRSQG 93 (128)
T ss_dssp CHHHHHHHHHHHT-----TCCCCCCCEEEC--SSSCCEEEEEEETT----EEEEESSCBSSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHc-----CCCCCeEEEEee--cCCCcEEEEEEECC----EEEEEEeccCCHHHHHHHHHHHHHHHHh
Confidence 4578999999985 224577876554 22347999999855 1112566668999999999999999883
No 84
>4f1n_A Kpago; argonaute, RNAI, RNAse H, RNA binding protein-RNA complex; 3.19A {Vanderwaltozyma polyspora}
Probab=92.19 E-value=0.13 Score=66.90 Aligned_cols=66 Identities=12% Similarity=0.132 Sum_probs=40.9
Q ss_pred cccCcEEeccccC----CCC-------CeEEEEEeecCCCCC-CCCCCCCCC--------------CccCHHHHHHhhhC
Q psy15484 300 KFRDAVVMPWYRN----QFE-------PTYFYVAEIMTNVHP-RSMFPSRTN--------------TYQTFEEYYSLKYG 353 (1233)
Q Consensus 300 ~~~~~VV~p~Y~n----~d~-------~~~Y~V~~V~~dltP-~S~Fp~~~~--------------~~~Ty~eYy~~kyg 353 (1233)
.+++.=|.+.|++ .++ .+.|.|.++.. .+| .-.|+...+ .+.|..|||+++||
T Consensus 355 ~LKgLkV~vth~~~~~~~~g~~~~~~~~r~k~I~GLs~-~~a~~~~F~~~~~~~~~~~~~~~g~~~~~iTVadYFk~kYn 433 (1046)
T 4f1n_A 355 LLKGLKVYRPYINYSINKDGTPKPPRKRSSKGIVGFTR-ESAVSMRFNVLESSLKKNSAPKPNEKPININTIDYFKRKYD 433 (1046)
T ss_dssp HHTTCEECCTTCC--------------CCCEECCEECS-SCSSSCC-----------------------CHHHHHHHHSC
T ss_pred HhCCCEEEEEecCccccccccccccccccceEEeeccC-CCCCceEEeccCCcccccccccCCcCceEEEHHHHHHHHhC
Confidence 4677767666653 121 13588888873 334 345764211 47899999999999
Q ss_pred ccccCCCCceEEe
Q psy15484 354 LQIQNLEQPLLDV 366 (1233)
Q Consensus 354 i~i~~~~QPLL~v 366 (1233)
+.+.+++-|+|.|
T Consensus 434 i~LkyP~LPcV~V 446 (1046)
T 4f1n_A 434 ITLKYPDMKLVNL 446 (1046)
T ss_dssp CCCSCTTSCCEEC
T ss_pred cccCCCCCCEEEE
Confidence 9999999999943
No 85
>2l33_A Interleukin enhancer-binding factor 3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, DRBM; NMR {Homo sapiens}
Probab=91.84 E-value=0.24 Score=45.94 Aligned_cols=64 Identities=14% Similarity=0.057 Sum_probs=46.7
Q ss_pred hHHHHHHHhhcCCCCCCCcccceEEEEeecC-CCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKE-DDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 4 SI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~-~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
..+.|..||++-+ .|.|.+....+ .-...|+|+|.+.... ..| .-+|||.|+|.||-.|+.+|.
T Consensus 16 ~K~~LqEl~Qk~~-------~p~Y~~v~~~Gp~H~~~F~v~V~v~g~~-----~~G-~G~SKK~AEq~AA~~AL~~L~ 80 (91)
T 2l33_A 16 GKNPVMELNEKRR-------GLKYELISETGGSHDKRFVMEVEVDGQK-----FQG-AGSNKKVAKAYAALAALEKLF 80 (91)
T ss_dssp TTCHHHHHHHHCS-------SCEEEEEEEEECSSCEEEEEEEEETTEE-----EEE-EESSHHHHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHhCC-------CCeEEEEEeeCCCCCCeEEEEEEECCEE-----EEe-eeCCHHHHHHHHHHHHHHHHh
Confidence 4567888998843 67898765332 2346899999997632 233 237999999999999999885
No 86
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1
Probab=90.83 E-value=0.089 Score=63.34 Aligned_cols=82 Identities=20% Similarity=0.190 Sum_probs=59.1
Q ss_pred cccCcEEeccccCC--CCCeEEEEEeecCCCCCC-CCCCCCCCCccCHHHHHHhhhCccccCCCCceEEecccccccccc
Q psy15484 300 KFRDAVVMPWYRNQ--FEPTYFYVAEIMTNVHPR-SMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFL 376 (1233)
Q Consensus 300 ~~~~~VV~p~Y~n~--d~~~~Y~V~~V~~dltP~-S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL~v~~~s~r~NlL 376 (1233)
.++|.-|.+.|++. ..++.|.|.++.+ .++. ..|+.. +..+|..|||+ +|++.+..++-|++++.
T Consensus 416 ~l~~l~v~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~f~~~-~~~~sv~~yf~-~~~~~l~~p~lp~v~~~--------- 483 (509)
T 1r6z_P 416 FLRGINVVYTPPQSFQSAPRVYRVNGLSR-APASSETFEHD-GKKVTIASYFH-SRNYPLKFPQLHCLNVG--------- 483 (509)
T ss_dssp HHTTCEEEECCCGGGCCCCEEEECCEEEE-EETTTCEEEET-TEEEEHHHHHH-HTTCCCSCTTSEEEECS---------
T ss_pred HhCCcEEEEecCCCccCCCCeEEEeeCCC-CChhhcEeccC-CeEEEHHHHHH-HcCCcccCCCCCeEecC---------
Confidence 37788777777532 1357899988864 2333 346552 46789999999 89999999999999441
Q ss_pred cccccccccccccCCcHHHHHhhhhcCCccEEEccccccccc
Q psy15484 377 TPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHP 418 (1233)
Q Consensus 377 ~~r~~~~~g~~~~~~s~~~~~~~~~~~~~~~~LvPELC~i~~ 418 (1233)
+ ....++++.|||.|.+
T Consensus 484 ---------~----------------~~~~~~~P~e~~~i~~ 500 (509)
T 1r6z_P 484 ---------S----------------SIKSILLPIELCSIEE 500 (509)
T ss_dssp ---------C----------------TTSCCEECGGGEEEEC
T ss_pred ---------C----------------CCCCceecceeeEecC
Confidence 0 1235899999999976
No 87
>1x48_A Interferon-induced, double-stranded RNA- activated protein kinase; structure genomics, DSRM domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.50.1.1
Probab=90.19 E-value=0.73 Score=42.30 Aligned_cols=67 Identities=24% Similarity=0.197 Sum_probs=45.4
Q ss_pred chHHHHHHHhhcCCCCCCCcccceEEEEeecCCCce-eEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSI-MFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 3 SSI~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~-~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+..++|+.||++.- ..|+|. ...+..... .|+|+|.+... .+ -.|. -+||+.|+|.||..|+.+|.+
T Consensus 7 d~Kt~LqE~~Q~~~------~~~~Y~-~~~Gp~H~~~~F~~~v~v~g~-~~---~~G~-G~SKK~Aeq~AA~~AL~~L~~ 74 (88)
T 1x48_A 7 GYIGLVNSFAQKKK------LSVNYE-QCEPNSELPQRFICKCKIGQT-MY---GTGS-GVTKQEAKQLAAKEAYQKLLK 74 (88)
T ss_dssp CHHHHHHHHHHHTT------CCEEEE-ECCCSSSSSCCEEEEEEESSC-EE---EEEE-ESSHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHcC------CCCeeE-EeeCCCCCCceEEEEEEECCE-EE---EEee-cCCHHHHHHHHHHHHHHHHHh
Confidence 56889999999862 234676 322211123 49999998652 11 1332 279999999999999999964
No 88
>1t4n_A Ribonuclease III; DSRBD, RNA-binding, hydrolase; NMR {Saccharomyces cerevisiae} SCOP: d.50.1.1
Probab=76.18 E-value=4 Score=37.93 Aligned_cols=65 Identities=14% Similarity=-0.126 Sum_probs=44.5
Q ss_pred HHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHH
Q psy15484 6 FIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLY 80 (1233)
Q Consensus 6 ~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh 80 (1233)
+.|..||++. . ..|.|.+...+..-...|+++|.+...-.+ ..=.| +||+.|.|.||-+|+.+|-
T Consensus 10 T~LQE~~Q~~----~--~~p~Y~v~~~GpdH~k~F~v~v~i~~~~~~-g~G~G---~SKK~AEQ~AA~~AL~~l~ 74 (94)
T 1t4n_A 10 RQLYSLIGYA----S--LRLHYVTVKKPTAVDPNSIVECRVGDGTVL-GTGVG---RNIKIAGIRAAENALRDKK 74 (94)
T ss_dssp HHHHHHTCSS----S--SCCEEEECCCCSSSCCSEEEEEECSSSCEE-EEEEE---SSHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHcCC----C--CCCEEEEeeeCCCCCCeEEEEEEECCEEEE-EEEEe---CCHHHHHHHHHHHHHHHHH
Confidence 5677888762 1 359998865432224589999999762111 11245 7999999999999887764
No 89
>1yvu_A Hypothetical protein AQ_1447; RNAse H fold, RNA binding protein, gene regulation; 2.90A {Aquifex aeolicus} SCOP: b.34.14.1 c.55.3.10 PDB: 2f8s_A 2f8t_A 2nub_A
Probab=75.05 E-value=0.094 Score=65.70 Aligned_cols=43 Identities=12% Similarity=-0.028 Sum_probs=32.4
Q ss_pred ccccCCCCCeEE--EEEee-cCCCCCCCCCCCCCCCccCHHHHHHhhhCccccCCCCceE
Q psy15484 308 PWYRNQFEPTYF--YVAEI-MTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLL 364 (1233)
Q Consensus 308 p~Y~n~d~~~~Y--~V~~V-~~dltP~S~Fp~~~~~~~Ty~eYy~~kygi~i~~~~QPLL 364 (1233)
..|+| ++| .|++| +|+.+|.|.|.. +..+| ||+++|++ .||||
T Consensus 185 ~~y~n----~ty~~riddi~~~~~~P~~~f~~--g~~iS---Yyk~~~~~-----~q~ll 230 (706)
T 1yvu_A 185 VKPIG----IDFVGRVQDVFKAKEKGEEFFRL--CMERS---THKSSKKA-----WEELL 230 (706)
T ss_dssp EEETT----CCCCEEEEEEEESTTSCHHHHHH--HHHTC---SSHHHHHH-----HHHHH
T ss_pred hhccc----ceeccccCcccccCCCcceEecC--CCCcc---eEecccCc-----chhhh
Confidence 44654 567 99999 999999999975 34466 88888854 36666
No 90
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=74.06 E-value=4 Score=38.67 Aligned_cols=38 Identities=21% Similarity=0.121 Sum_probs=30.8
Q ss_pred EEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1190 VRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1190 ~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
.++++..-....++|.|+.+.+|+..||..|+++|++.
T Consensus 53 ~tl~l~WP~~mef~a~G~rK~eAE~kAAA~AC~kLK~L 90 (119)
T 2db2_A 53 VTLHIKWPKSVEVEGYGSKKIDAERQAAAAACQLFKGW 90 (119)
T ss_dssp EEEEECSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEecCCCcEEEEeeccchHHHHHHHHHHHHHHHHHc
Confidence 34444444667799999999999999999999999864
No 91
>1t4o_A Ribonuclease III; RNT1P, DSRBD, RNA-binding, hydrolase; 2.50A {Saccharomyces cerevisiae} SCOP: d.50.1.1 PDB: 1t4l_B 2lbs_B
Probab=70.54 E-value=6.9 Score=37.79 Aligned_cols=66 Identities=14% Similarity=-0.122 Sum_probs=45.2
Q ss_pred HHHHHHhhcCCCCCCCcccceEEEEeecCCCceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHh
Q psy15484 6 FIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYE 81 (1233)
Q Consensus 6 ~LL~rYCs~LPsD~ft~~~P~~~~~~~~~~~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~ 81 (1233)
+.|..||++ . . ..|.|.+...+..-...|+++|.+.....+ ..=.| +||+.|.|.||-.|+.+|-.
T Consensus 12 T~LQE~~Q~--~--~--~~P~Y~vv~~GPdH~k~F~v~V~i~g~~~~-g~G~G---~SKK~AEQ~AA~~AL~~l~~ 77 (117)
T 1t4o_A 12 RQLYSLIGY--A--S--LRLHYVTVKKPTAVDPNSIVECRVGDGTVL-GTGVG---RNIKIAGIRAAENALRDKKM 77 (117)
T ss_dssp HHHHHHHCC--G--G--GCCEEEEEECCCSSCCCEEEEEECTTCCEE-EEEEE---SSHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHcC--C--C--CCCEEEEeeeCCCCCCeEEEEEEECCEEEE-EEEEe---CCHHHHHHHHHHHHHHHHHH
Confidence 567888876 1 1 459998876532224579999999763111 11245 79999999999888876653
No 92
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=66.25 E-value=5.7 Score=50.49 Aligned_cols=73 Identities=15% Similarity=0.081 Sum_probs=53.8
Q ss_pred CCCCChHHHHHhhccccCcccCCccc-------------cCCC-EEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHh
Q psy15484 1159 SVPKSPIRELLELEPENARFSKPEKL-------------ADGR-RVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224 (1233)
Q Consensus 1159 ~~pk~pl~eL~e~~~~~~~f~~~~~~-------------~~~~-~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L 1224 (1233)
+++.+|...+.|+......|...+.. ..++ .|+|.+.+-+-.+..|+=+-||.|+|.||..||++|
T Consensus 14 ~~~~~pk~~~~q~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~~~~~~~kkd~eq~aa~~al~~~ 93 (950)
T 3htx_A 14 KHTPTPKAIIHQKFGAKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVVSNVFKKKKDSEQSAAELALDKL 93 (950)
T ss_dssp -CCCCCHHHHHHTTGGGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEECCCBSCHHHHHHHHHHHHHTTT
T ss_pred CCCCCHHHHHHHHhCcceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEecchhhccccHHHHHHHHHHHHh
Confidence 46778888888887665555322110 1233 799999998877777888899999999999999999
Q ss_pred hhcCCCC
Q psy15484 1225 KSAKPAD 1231 (1233)
Q Consensus 1225 ~~~~~~~ 1231 (1233)
+-.+.++
T Consensus 94 g~~~~~~ 100 (950)
T 3htx_A 94 GIRPQND 100 (950)
T ss_dssp TSTTTSC
T ss_pred CCCcccc
Confidence 8766554
No 93
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=60.46 E-value=12 Score=35.29 Aligned_cols=91 Identities=19% Similarity=0.205 Sum_probs=62.4
Q ss_pred CchHHHHHHHHHHHHHHHHHHHhcccCCCCCcHHHHHHHhhChHHHHHHHHHcCcchhhhhcCcchHHHHHHHHHHhhhc
Q psy15484 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092 (1233)
Q Consensus 1013 ~yeRLEFLGDAVLd~lvt~~Ly~~~p~~~pg~Lt~lRsalVsN~~La~iA~~lgL~~~l~~~s~~l~~~i~~~v~~~~~~ 1092 (1233)
--.-|.-+||++++++++--|-+- -..+.|. -|-|.+||..-..-||.+.+...
T Consensus 11 tdK~LakfGDSLvNfl~SlALse~-lG~Ptg~-------rVPnaSLaiale~agL~~~~pR~------------------ 64 (133)
T 1ztd_A 11 IDKGLAKFGDSLINFLYSLALTEF-LGKPTGD-------RVPNASLAIALELTGLSKNLRRV------------------ 64 (133)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHH-HTSCCCC-------CCCHHHHHHHHHHHTGGGGCCGG------------------
T ss_pred hcchHHHHhHHHHHHHHHHHHHHH-hCCCCCC-------CCCChHHHHHHHHhhhhhcCCcc------------------
Confidence 346799999999999988777542 2222222 27888888777777776654210
Q ss_pred ccchhhhhhhhccccCccccCCCCcchhchhhccccchhhcCCCCHHHHHHHHHHHHHH
Q psy15484 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151 (1233)
Q Consensus 1093 ~~~~~~~~~~~~ee~~~~~~~~~pKvLaDvfEAlIGAIylDsG~dl~~v~~~i~~ll~p 1151 (1233)
--..-||+.||+|+=-|+..-+..+.+-+++..-+.+
T Consensus 65 ----------------------DKh~kGd~aEA~iAyAWleG~is~eEaveilk~nl~~ 101 (133)
T 1ztd_A 65 ----------------------DKHAKGDYAEALIAKAWLMGLISEREAVEIIKKNLYP 101 (133)
T ss_dssp ----------------------GTTCHHHHHHHHHHHHHHTTSSCHHHHHHHHHTTCCG
T ss_pred ----------------------cccCccHHHHHHHHHHHHhccccHHHHHHHHHhcCcH
Confidence 0124589999999999999888777776666554433
No 94
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana}
Probab=59.04 E-value=9.4 Score=48.55 Aligned_cols=65 Identities=20% Similarity=0.195 Sum_probs=45.8
Q ss_pred ccceEEEEeecCC-------------CceeEEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCcccCCC
Q psy15484 23 LAPIITISEIKED-------------DSIMFTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDL 89 (1233)
Q Consensus 23 ~~P~~~~~~~~~~-------------~~~~~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~GeLdd~L 89 (1233)
.++.|.+..+.++ +...|+|.|.||.-+-+ ..+.+.||-|.|+||-.| |+|+|-=--..
T Consensus 29 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~lp~~~~~-----~~~~~~kkd~eq~aa~~a---l~~~g~~~~~~ 100 (950)
T 3htx_A 29 AKASYTVEEVHDSSQSGCPGLAIPQKGPCLYRCHLQLPEFSVV-----SNVFKKKKDSEQSAAELA---LDKLGIRPQND 100 (950)
T ss_dssp GGSEEEEEEECCSCSCCCTTCCSCCCCCCEEEEEEECSSCEEE-----CCCBSCHHHHHHHHHHHH---HTTTTSTTTSC
T ss_pred cceeeeehhhhcccCCCCCccccCCCCCeeEEEEeeCCCceEe-----cchhhccccHHHHHHHHH---HHHhCCCcccc
Confidence 5678888766432 23589999999996443 478899999999999876 66677533344
Q ss_pred cccchh
Q psy15484 90 MPVTKE 95 (1233)
Q Consensus 90 lP~~~e 95 (1233)
.|+.+|
T Consensus 101 ~~~~~~ 106 (950)
T 3htx_A 101 DLTVDE 106 (950)
T ss_dssp CCCHHH
T ss_pred Ccchhh
Confidence 455543
No 95
>2db2_A KIAA0890 protein; DSRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=58.45 E-value=12 Score=35.39 Aligned_cols=51 Identities=18% Similarity=0.128 Sum_probs=40.4
Q ss_pred EEEEEEccCCCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCcccc
Q psy15484 40 FTCSIRLPINSPLKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT 93 (1233)
Q Consensus 40 ~~c~l~LP~nSPir~~i~G~p~~sk~lAK~sAAleAC~~Lh~~GeLdd~LlP~~ 93 (1233)
-.|||.|==-.|+.-.-.| +.|..|.+-||--||++|-++|.||-+=.|..
T Consensus 51 K~~tl~l~WP~~mef~a~G---~rK~eAE~kAAA~AC~kLK~Lgll~p~n~pl~ 101 (119)
T 2db2_A 51 KKVTLHIKWPKSVEVEGYG---SKKIDAERQAAAAACQLFKGWGLLGPRNELFD 101 (119)
T ss_dssp EEEEEEECSSSCEEEEEEE---SSHHHHHHHHHHHHHHHHHHHTSSCTTCCCCC
T ss_pred eEEEEEecCCCcEEEEeec---cchHHHHHHHHHHHHHHHHHcCccCCCCCcch
Confidence 5788888666677532356 68999999999999999999999997666654
No 96
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=41.04 E-value=0.88 Score=56.62 Aligned_cols=60 Identities=15% Similarity=0.159 Sum_probs=42.1
Q ss_pred HHHHHhhcCCC-----CCCCcccceEEEEee---cCCCcee-EEEEEEcc---CCCCCccc-ccCCCCCCHHHHH
Q psy15484 7 IVNRYCARLPS-----DIFTRLAPIITISEI---KEDDSIM-FTCSIRLP---INSPLKRS-VTGHKMPTKLLAW 68 (1233)
Q Consensus 7 LL~rYCs~LPs-----D~ft~~~P~~~~~~~---~~~~~~~-~~c~l~LP---~nSPir~~-i~G~p~~sk~lAK 68 (1233)
+.++||.++|+ |.|+...|. ..... ..-|..+ |. ++.|| ++||+.+. ..|.++..+|+.+
T Consensus 609 ~~~~~~~~~~~~~~~~~~~~~~~~~-~c~~~~c~~~~g~~~~~~-~~~lp~~~~~~~~~~~~~~~~~~~~~~w~~ 681 (696)
T 2ykg_A 609 FKECFVSRPHPKPKQFSSFEKRAKI-FCARQNCSHDWGIHVKYK-TFEIPVIKIESFVVEDIATGVQTLYSKWKD 681 (696)
T ss_dssp GGGTEEEEEEEEEEECSSCEEEEEE-EESSTTTCCEEEEEEEET-TEEEEEECGGGEEEEETTTCCEEECSCGGG
T ss_pred hHhHeeeccCCccccccccccCCce-EeCCCCCCccccceEEEc-ceecceeeeeeEEEEecCCCcchhhhhhhc
Confidence 68999999999 999988775 22211 1112334 65 89999 99999986 4777666666544
No 97
>2kou_A Dicer-like protein 4; ATP-binding, endonuclease, helicase, hydrolase, nuclease, nucleotide-binding, nucleus, RNA- binding; NMR {Arabidopsis thaliana}
Probab=38.59 E-value=42 Score=31.42 Aligned_cols=40 Identities=15% Similarity=0.059 Sum_probs=28.8
Q ss_pred CCEEEEEEEECC-----eEEEEEEeCCHHHHHHHHHHHHHHHhhhcC
Q psy15484 1187 GRRVRVTVEVFG-----KGSYKGIGRNYCIAKCTAAKCALKHLKSAK 1228 (1233)
Q Consensus 1187 ~~~~~v~V~V~g-----~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~~ 1228 (1233)
++.| |+|..-. ...|.-. .|++.||+.||-+|.+.|-+..
T Consensus 38 ~~~~-c~v~LP~~splr~i~g~~~-~sk~~AK~sAAf~Ac~~L~~~G 82 (102)
T 2kou_A 38 GGTI-CRITLPANAPISEIESSLL-PSTEAAKKDACLKAVHELHNLG 82 (102)
T ss_dssp GCEE-EEEECCTTCSSCCEEEEEE-SSHHHHHHHHHHHHHHHHHHHC
T ss_pred CCeE-EEEECCCCCCCCeeeCCcc-ccHHHHHHHHHHHHHHHHHHCC
Confidence 3556 7877653 2233333 8999999999999999996543
No 98
>1ztd_A Hypothetical protein PFU-631545-001; structural genomics, southeast collaboratory for structural genomics, secsg; 2.00A {Pyrococcus furiosus} SCOP: a.149.1.2
Probab=35.85 E-value=1.7e+02 Score=27.60 Aligned_cols=47 Identities=21% Similarity=0.333 Sum_probs=34.4
Q ss_pred cchhhhhhHHHHHHHHHHH--HHhCCCCCcchhHHHHHHhhccHHHHHHHHHcCCccch
Q psy15484 782 KRLETIGDSFLKYAITIFL--YCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838 (1233)
Q Consensus 782 ERLE~LGDsfLK~~vs~~L--f~~~P~~~EG~Ls~~Rs~lVsN~nL~~la~~~gL~~~I 838 (1233)
.-|.-+|||.+.|+.|.-| |..+|+-. -|-|..|...-...||...+
T Consensus 13 K~LakfGDSLvNfl~SlALse~lG~Ptg~----------rVPnaSLaiale~agL~~~~ 61 (133)
T 1ztd_A 13 KGLAKFGDSLINFLYSLALTEFLGKPTGD----------RVPNASLAIALELTGLSKNL 61 (133)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTSCCCC----------CCCHHHHHHHHHHHTGGGGC
T ss_pred chHHHHhHHHHHHHHHHHHHHHhCCCCCC----------CCCChHHHHHHHHhhhhhcC
Confidence 5688899999999998877 56777532 47788887766666665443
No 99
>2l6m_A Protein dicer; DSRBD, hydrolase; NMR {Schizosaccharomyces pombe}
Probab=20.31 E-value=2.4e+02 Score=26.23 Aligned_cols=40 Identities=20% Similarity=0.096 Sum_probs=32.9
Q ss_pred CEEEEEEEECCeEEEEEEeCCHHHHHHHHHHHHHHHhhhc
Q psy15484 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227 (1233)
Q Consensus 1188 ~~~~v~V~V~g~~~~~G~G~Skk~Ak~~AAk~AL~~L~~~ 1227 (1233)
..|....+++|+.++.|.+.+++.|+..-..+.++.+++.
T Consensus 66 ~~Y~~S~~~H~~IV~~~Ks~~~~Nsq~im~~~L~~L~q~~ 105 (121)
T 2l6m_A 66 KYYGFSFFRHGNIVAYGKSRKVANAKYIMKQRLLKLLEDK 105 (121)
T ss_dssp EEEEEEEEETTEEEEEEEESSHHHHHHHHHHHHHHHHHHT
T ss_pred eeeeeEEEEeCcEEEehhhhhhhhHHHHHHHHHHHHHHHH
Confidence 4578889999999999999999999987776666666553
Done!