Your job contains 1 sequence.
>psy15484
MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK
MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST
KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA
ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY
LMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESK
FRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLE
QPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPELCLIHPFP
ASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMKKLK
EKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENED
EEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDSNDDLSS
VDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFWEEIDVNHI
NSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAIL
TEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPS
PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA
TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVD
LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVI
PPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFL
GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHE
VIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDT
VWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKG
SYKGIGRNYCIAKCTAAKCALKHLKSAKPADVK
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy15484
(1233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 1328 3.1e-306 5
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 989 6.2e-226 4
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 987 7.5e-225 4
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 982 2.0e-224 4
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 988 3.3e-224 4
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 982 4.2e-224 4
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 970 8.9e-223 4
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 984 6.0e-219 4
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 984 6.9e-218 4
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 993 1.3e-210 3
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 992 2.3e-210 3
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 993 8.0e-209 3
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 969 4.2e-206 3
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 738 4.8e-166 4
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 986 2.2e-132 3
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 856 1.0e-110 2
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 838 2.4e-83 1
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 347 7.1e-76 5
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 513 2.1e-64 3
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 453 2.1e-52 3
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 404 3.3e-44 4
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 382 5.1e-44 4
UNIPROTKB|H0YJZ6 - symbol:DICER1 "Endoribonuclease Dicer"... 219 9.7e-28 2
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 230 2.9e-20 4
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 198 3.9e-20 5
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 233 4.0e-18 1
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 249 4.2e-18 1
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 143 3.5e-13 2
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 163 2.6e-12 6
TIGR_CMR|DET_1025 - symbol:DET_1025 "ribonuclease III" sp... 127 7.8e-12 2
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 170 2.1e-11 1
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 176 5.6e-10 2
FB|FBgn0026722 - symbol:drosha "drosha" species:7227 "Dro... 144 1.8e-09 5
WB|WBGene00009163 - symbol:drsh-1 species:6239 "Caenorhab... 121 1.9e-09 4
UNIPROTKB|O01326 - symbol:drsh-1 "Ribonuclease 3" species... 121 1.9e-09 4
UNIPROTKB|F1PJL5 - symbol:DROSHA "Uncharacterized protein... 138 2.2e-09 2
ZFIN|ZDB-GENE-070209-23 - symbol:rnasen "ribonuclease typ... 144 1.2e-08 3
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 127 2.2e-08 2
UNIPROTKB|F1NQC9 - symbol:DROSHA "Uncharacterized protein... 138 9.0e-08 3
UNIPROTKB|F1LQY5 - symbol:F1LQY5 "Uncharacterized protein... 138 1.4e-07 4
MGI|MGI:1261425 - symbol:Drosha "drosha, ribonuclease typ... 138 1.6e-07 3
UNIPROTKB|Q9NRR4 - symbol:DROSHA "Ribonuclease 3" species... 138 1.6e-07 3
UNIPROTKB|F1SP38 - symbol:DROSHA "Uncharacterized protein... 135 2.9e-07 3
UNIPROTKB|E1BGY0 - symbol:DROSHA "Uncharacterized protein... 135 3.2e-07 3
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 119 4.6e-07 3
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 119 4.6e-07 3
UNIPROTKB|E9PTR3 - symbol:E9PTR3 "Uncharacterized protein... 138 5.1e-07 4
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 146 1.2e-06 4
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 115 1.2e-06 2
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 126 1.3e-06 2
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 111 5.0e-06 2
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 111 5.0e-06 2
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 144 7.8e-06 3
RGD|1307626 - symbol:Drosha "drosha, ribonuclease type II... 136 1.8e-05 2
TIGR_CMR|GSU_2228 - symbol:GSU_2228 "ribonuclease III" sp... 131 2.1e-05 1
UNIPROTKB|F1M2R2 - symbol:F1M2R2 "Uncharacterized protein... 136 2.2e-05 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 129 4.4e-05 1
TIGR_CMR|SPO_3198 - symbol:SPO_3198 "ribonuclease III" sp... 111 5.2e-05 2
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 126 6.5e-05 1
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 112 0.00013 2
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 119 0.00026 2
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 1328 (472.5 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 277/583 (47%), Positives = 385/583 (66%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
+ +AI +VN+YCARLPSD FT+L + + + +F ++RLPINSPLK + G
Sbjct: 822 LGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKHDIVGLP 881
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKE-FINLYENTE--PVVPKTPEI---- 113
MPT+ LA R+AA++AC L+ + ELD+ L P+ KE F L + E + P+ +I
Sbjct: 882 MPTQTLARRLAALQACVELHRIGELDDQLQPIGKEGFRALEPDWECFELEPEDEQIVQLS 941
Query: 114 -ETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPP 172
E P +TKRRQ+Y+KR+AS F +CRP PCYLY +++ L CPIP+EQN RGRKI+PP
Sbjct: 942 DEPRPGTTKRRQYYYKRIASEFCDCRPVAGAPCYLYFIQLTLQCPIPEEQNTRGRKIYPP 1001
Query: 173 ENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFT 232
E++ QG ILTTK IPK+ +F IFTR GEV+VS+EL + V+L+ E + F++Y FT
Sbjct: 1002 EDAQQGFGILTTKRIPKLSAFSIFTRSGEVKVSLELAKERVILTSEQIVCINGFLNYTFT 1061
Query: 233 KVLKLKKYLMLFDPNCSENSYFIVPTV-SDSEQIVIDWKFMTLISEHHNDVIQDIPEKER 291
VL+L+K+LMLFDP+ +EN FIVPTV + + IDW+F+ LI + N + + +P++ER
Sbjct: 1062 NVLRLQKFLMLFDPDSTENCVFIVPTVKAPAGGKHIDWQFLELIQANGNTMPRAVPDEER 1121
Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
+ FD +F+DAVVMPWYRNQ +P YFYVAEI ++ P S FP + Y+TF+ YY +K
Sbjct: 1122 QAQPFDPQRFQDAVVMPWYRNQDQPQYFYVAEICPHLSPLSCFPG--DNYRTFKHYYLVK 1179
Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVP 411
YGL IQN QPLLDVDHTS RLNFLTPRYVNRKG+ L L +KQ+LVP
Sbjct: 1180 YGLTIQNTSQPLLDVDHTSARLNFLTPRYVNRKGVALPTSSEETKRAKRENLEQKQILVP 1239
Query: 412 ELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKV-ILDEKVEWPPF 470
ELC +HPFPASLWR +V LP ILYR+N LLLAD+IR V++++GLG+ I DE EWP
Sbjct: 1240 ELCTVHPFPASLWRTAVCLPCILYRINGLLLADDIRKQVSADLGLGRQQIEDEDFEWPML 1299
Query: 471 NFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
+FGW + ++ +K ++K + + DDT +N +D + V + T +ET
Sbjct: 1300 DFGWSLSEVLKK-SRESKQ-KESLKDDT-ING--KDLADVEKKPTS---------EETQL 1345
Query: 531 DSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMA 573
D ++ + ++ ++ I E K Q + ++EIGTWSN+MA
Sbjct: 1346 DKDSKDDKVEKSAIELIIEGEEKL--QEADDFIEIGTWSNDMA 1386
Score = 1011 (360.9 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 193/261 (73%), Positives = 223/261 (85%)
Query: 966 PESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
P + D LL GF++FEES+ Y+F+D+SYLLQAMTHASY N LTDCYQRLEFLGDA+L
Sbjct: 1980 PNATEELDQLLSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVL 2039
Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
DYLITRHLYED R HSPG LTDLRSALVNN IFASLAVR GFH FF+HLSPGL++VI RF
Sbjct: 2040 DYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRF 2099
Query: 1086 VKMQAENDFTLNQEYYLM-EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKV 1144
V++Q EN +++EYYL+ E ECD+AED+EVPKALGD+FES+AGAI+LDS MSLD VW V
Sbjct: 2100 VRIQQENGHCISEEYYLLSEEECDDAEDVEVPKALGDVFESIAGAIFLDSNMSLDVVWHV 2159
Query: 1145 YYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKG 1204
Y +M EIE+ S SVPKSPIRELLELEPE A+F KPEKLADGRRVRVTV+VF KG+++G
Sbjct: 2160 YSNMMSPEIEQFSNSVPKSPIRELLELEPETAKFGKPEKLADGRRVRVTVDVFCKGTFRG 2219
Query: 1205 IGRNYCIAKCTAAKCALKHLK 1225
IGRNY IAKCTAAKCAL+ LK
Sbjct: 2220 IGRNYRIAKCTAAKCALRQLK 2240
Score = 602 (217.0 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 122/199 (61%), Positives = 147/199 (73%)
Query: 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
G + +RLETIGDSFLKYAIT +LY TY NVHEGKLSHLRSKQV+N NL++LG++K GE
Sbjct: 1738 GINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNLYRLGRRKRLGEY 1797
Query: 838 MIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQK 897
MIATKFEP DNWLPP Y+VPK LE ALIEA P W L ++K LS ++ E++++K
Sbjct: 1798 MIATKFEPHDNWLPPCYYVPKELEKALIEAKIPTHHWKLADLLDIKNLSSVQICEMVREK 1857
Query: 898 CV-------------DLDCTVDM--NVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIE 942
LD + D + +PYNLV+QHSIPDKSIADCVEALIGAYLIE
Sbjct: 1858 ADALGLEQNGGAQNGQLDDSNDSCNDFSCFIPYNLVSQHSIPDKSIADCVEALIGAYLIE 1917
Query: 943 CGPRGALLFMSWLGLKVIP 961
CGPRGALLFM+WLG++V+P
Sbjct: 1918 CGPRGALLFMAWLGVRVLP 1936
Score = 95 (38.5 bits), Expect = 2.4e-142, Sum P(3) = 2.4e-142
Identities = 32/104 (30%), Positives = 55/104 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDG---FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
+++ PP + +K ++ +L FD+ + + + S +LQA+T ++ N +
Sbjct: 1687 IEIEPPTS---TKAITSAILPAGFSFDRQPDLVGHPGPSPSIILQALTMSN--ANDGINL 1741
Query: 1014 YQRLEFLGDAILDYLITRHLYED-ERAHSPGTLTDLRSALVNNI 1056
+RLE +GD+ L Y IT +LY E H G L+ LRS V N+
Sbjct: 1742 -ERLETIGDSFLKYAITTYLYITYENVHE-GKLSHLRSKQVANL 1783
Score = 81 (33.6 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 18/42 (42%), Positives = 24/42 (57%)
Query: 740 VKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSP 781
++ EP + K+ I+ P+ FSFD QPDL H GPSP
Sbjct: 1687 IEIEPPTSTKAITSAIL-----PAGFSFDRQPDLVGHPGPSP 1723
Score = 73 (30.8 bits), Expect = 2.9e-146, Sum P(4) = 2.9e-146
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 2029 QRLEFLGDAVLDYLITRHLY-EDPRQHSPGALTDLRSALVNN 2069
Score = 49 (22.3 bits), Expect = 3.1e-102, Sum P(2) = 3.1e-102
Identities = 18/80 (22%), Positives = 33/80 (41%)
Query: 847 DNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKC-------V 899
DN L F P+ + L+ + + CL + KE K+L+ + ++ V
Sbjct: 7 DNNLHTTVFTPRDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHGRVSV 66
Query: 900 DLDCTVDMNVQSVVPYNLVT 919
L C V + + Y ++T
Sbjct: 67 YLSCEVGTSTEPCSIYTMLT 86
Score = 45 (20.9 bits), Expect = 9.0e-170, Sum P(5) = 9.0e-170
Identities = 32/129 (24%), Positives = 52/129 (40%)
Query: 437 LNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK-MKKLKE-----KYG-WDTKD 489
+N LAD + + E L K D+KVE + +KL+E + G W
Sbjct: 1326 INGKDLADVEKKPTSEETQLDKDSKDDKVEKSAIELIIEGEEKLQEADDFIEIGTWSNDM 1385
Query: 490 ANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKS 549
A+D+ + E +D EDD+ + A V+ D++ + E KS
Sbjct: 1386 ADDIASFNQEDDD--EDDAFHLPVLP--ANVKFCDQQTRYGSPTFWDVSNGESGFKGPKS 1441
Query: 550 DENKTESQG 558
+NK +G
Sbjct: 1442 SQNKQGGKG 1450
Score = 40 (19.1 bits), Expect = 2.7e-101, Sum P(2) = 2.7e-101
Identities = 15/41 (36%), Positives = 18/41 (43%)
Query: 841 TKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWN-CLSLP 880
TK R+N VP E + FPASLW + LP
Sbjct: 1223 TKRAKRENLEQKQILVP---ELCTVHP-FPASLWRTAVCLP 1259
Score = 37 (18.1 bits), Expect = 3.1e-306, Sum P(5) = 3.1e-306
Identities = 15/57 (26%), Positives = 25/57 (43%)
Query: 640 LKIQDWIESNFFW---EEIDVNHINSKAEFVKVIQD--KLTFYEGQLELIKNRIDVE 691
L + D +E N W E + ++ + D +L E QL+L RI++E
Sbjct: 1634 LLLSDLVELNADWVARHEQETYNVMGCGDSFDNYNDHHRLNLDEKQLKLQYERIEIE 1690
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 989 (353.2 bits), Expect = 6.2e-226, Sum P(4) = 6.2e-226
Identities = 213/485 (43%), Positives = 287/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI VNRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHVNRYCARLPSDPFTHLAPKCRTQELPDGT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD LMPV KE + E + + + P ST
Sbjct: 684 MGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS++ L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P +E++Y ++P V+DS + ID+ FM I + + I + FVF
Sbjct: 864 ALEFKPTGAESAYCVLPLNVVNDSSTLDIDFTFMEDIEKSEARIGIPSTKYSKETPFVFK 923
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 924 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 981
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 982 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK-K 1100
Query: 478 KLKEK 482
+ K
Sbjct: 1101 SIDSK 1105
Score = 848 (303.6 bits), Expect = 6.2e-226, Sum P(4) = 6.2e-226
Identities = 169/279 (60%), Positives = 211/279 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P+++ + L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TD
Sbjct: 1635 GCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITD 1694
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1695 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1754
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1755 AVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1814
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1815 YMDSGMSLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1873
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1874 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1912
Score = 272 (100.8 bits), Expect = 6.2e-226, Sum P(4) = 6.2e-226
Identities = 71/195 (36%), Positives = 108/195 (55%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL K I V+ T + P+ + ++N PS +L+ + L+ N N +
Sbjct: 1196 FCQGNQLNYFKQEIPVQPTT--SYPIQNLYH-YENQPKPSNECTLLSNKYLDGNANTSTS 1252
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF-DFQPD---------LENHT-GPSP 781
GS S G++ + + S + +S P+ L N + G +
Sbjct: 1253 DGSPAVSTMPAVMSAGRALKDRMDSEQSPSAGYSSRTLGPNPGLILQALTLSNASDGFNL 1312
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387
Score = 171 (65.3 bits), Expect = 6.2e-226, Sum P(4) = 6.2e-226
Identities = 37/86 (43%), Positives = 51/86 (59%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1530 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588
Query: 962 PVTNPESKHLSDVLLDGFDKFEESIN 987
+ + + F ++S++
Sbjct: 1589 VIKRTSREKALYPAQENFSSQQKSLS 1614
Score = 74 (31.1 bits), Expect = 6.4e-103, Sum P(2) = 6.4e-103
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1297 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1348
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1349 KKVSNCNLYRLGKKKG 1364
Score = 73 (30.8 bits), Expect = 8.1e-103, Sum P(2) = 8.1e-103
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1697 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1737
Score = 52 (23.4 bits), Expect = 6.3e-120, Sum P(4) = 6.3e-120
Identities = 23/85 (27%), Positives = 39/85 (45%)
Query: 208 LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQI-V 266
L+ K L EE+ S + + Y+ KV+KL + L + P + V ++ Q
Sbjct: 351 LLRKIHALCEEHFSPASLDLKYVTPKVMKLLEILRKYKPY-ERQQFESVEWYNNRNQDNY 409
Query: 267 IDWKFMTLISEHHNDVIQDIPEKER 291
+ W SE +D ++I EKE+
Sbjct: 410 VSWSD----SEDDDDD-EEIEEKEK 429
Score = 39 (18.8 bits), Expect = 1.5e-118, Sum P(4) = 1.5e-118
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E +++DEE +K K + N
Sbjct: 413 SDSEDDDDDEEIEEKEKPETN 433
Score = 39 (18.8 bits), Expect = 1.5e-118, Sum P(4) = 1.5e-118
Identities = 17/68 (25%), Positives = 32/68 (47%)
Query: 155 TCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVV 214
T +P+ +G P EN Q +++ + +P S + ++EVS +L N +
Sbjct: 1126 TIIVPENAAHQGATRTPLENHDQ-MSV-NCRRLPAESSGKL-----QIEVSTDLTAINGL 1178
Query: 215 LSEENLSN 222
+NL+N
Sbjct: 1179 SYNKNLAN 1186
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 987 (352.5 bits), Expect = 7.5e-225, Sum P(4) = 7.5e-225
Identities = 212/485 (43%), Positives = 289/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P ++++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 864 ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 924 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 981
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 982 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1100
Query: 478 KLKEK 482
+ K
Sbjct: 1101 SIDSK 1105
Score = 845 (302.5 bits), Expect = 7.5e-225, Sum P(4) = 7.5e-225
Identities = 169/279 (60%), Positives = 210/279 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P++ + L+ GF+ FE+ INYRFK+K+YLLQA THASY NT+TD
Sbjct: 1641 GCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITD 1700
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1701 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1760
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1761 AVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1820
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1821 YMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1879
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1880 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1918
Score = 269 (99.8 bits), Expect = 7.5e-225, Sum P(4) = 7.5e-225
Identities = 74/196 (37%), Positives = 109/196 (55%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL K I V+ T + P+ + +++N PS +L+ + L+ N NK +
Sbjct: 1197 FCQGNQLNYYKQEIPVQPTT--SYPIQNL-YNYENQPKPSDECTLLSNKYLDGNANKSTS 1253
Query: 733 YGS---------VE--KDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHT-GPS 780
GS E + +K + S C G T P+ L N + G +
Sbjct: 1254 DGSPTTAAMPGTTEAVRALKDKMGSEQSPCP-GYSSRTLGPNPGLILQALTLSNASDGFN 1312
Query: 781 PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+
Sbjct: 1313 LERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVV 1372
Query: 841 TKFEPRDNWLPPGYFV 856
+ F+P NWLPPGY V
Sbjct: 1373 SIFDPPVNWLPPGYVV 1388
Score = 169 (64.5 bits), Expect = 7.5e-225, Sum P(4) = 7.5e-225
Identities = 35/60 (58%), Positives = 42/60 (70%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593
Score = 74 (31.1 bits), Expect = 1.1e-102, Sum P(2) = 1.1e-102
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1298 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1349
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1350 KKVSNCNLYRLGKKKG 1365
Score = 73 (30.8 bits), Expect = 7.3e-107, Sum P(4) = 7.3e-107
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1703 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1743
Score = 51 (23.0 bits), Expect = 1.6e-203, Sum P(5) = 1.6e-203
Identities = 19/54 (35%), Positives = 27/54 (50%)
Query: 460 ILDEKVEW-PPFNFGWKMKKLKEKYGWD--TKD---ANDVIVDDTEVNDTKEDD 507
I D V W PP + K +K+ D TKD AN + +D E +D +E+D
Sbjct: 1374 IFDPPVNWLPPGYVVNQDKSNADKWEKDEMTKDCMLANGKLDEDFEEDDEEEED 1427
Score = 46 (21.3 bits), Expect = 2.6e-118, Sum P(4) = 2.6e-118
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTL 274
L EE+ S + + ++ KV+KL + L + P + V ++ Q D +++
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQ---D-NYVSW 412
Query: 275 ISEHHNDVIQDIPEKER 291
+D ++I EKE+
Sbjct: 413 SDSEDDDEDEEIEEKEK 429
Score = 42 (19.8 bits), Expect = 6.7e-118, Sum P(4) = 6.7e-118
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE +K K + N
Sbjct: 413 SDSEDDDEDEEIEEKEKPETN 433
Score = 38 (18.4 bits), Expect = 1.4e-101, Sum P(3) = 1.4e-101
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 534 NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPM 587
+E++ E EE ++ K+ + ES +++ G S EM V YPM P+
Sbjct: 1793 SEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQVY---YPMMRPL 1842
Score = 37 (18.1 bits), Expect = 1.6e-203, Sum P(5) = 1.6e-203
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 1438 DYEDDFLEYDQE 1449
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 982 (350.7 bits), Expect = 2.0e-224, Sum P(4) = 2.0e-224
Identities = 213/486 (43%), Positives = 289/486 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 684 MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVPT--VSDSEQIVIDWKFMTLI--SEHHNDVIQDIPEKERENFVF 296
+ F P ++++Y ++P V DS + ID+KFM I SE + KE F+F
Sbjct: 864 ALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMP-FIF 922
Query: 297 DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 923 KLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDL 980
Query: 357 QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLI 416
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC I
Sbjct: 981 TNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI 1040
Query: 417 HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
HP PASLWRK+V LPSILYRL+ LL A+E+R A++ G+G L +P +FGWK
Sbjct: 1041 HPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK- 1099
Query: 477 KKLKEK 482
K + K
Sbjct: 1100 KSIDSK 1105
Score = 841 (301.1 bits), Expect = 2.0e-224, Sum P(4) = 2.0e-224
Identities = 168/279 (60%), Positives = 210/279 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P+++ + L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TD
Sbjct: 1639 GCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITD 1698
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1699 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1758
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1759 AVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1819 YMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1877
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1878 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916
Score = 273 (101.2 bits), Expect = 2.0e-224, Sum P(4) = 2.0e-224
Identities = 71/195 (36%), Positives = 109/195 (55%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL + I V+ T + P+ + S +N PS +L+ + L+ N N+ +
Sbjct: 1197 FCQGNQLNYCRQEIPVQPTT--SYPIQNLYSS-ENQPKPSNECTLLSNKYLDGNANRSTS 1253
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFD-FQPD---------LENHT-GPSP 781
G + V T + + + +T S +S P+ L N + G +
Sbjct: 1254 DGCPKMTVTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNL 1313
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388
Score = 170 (64.9 bits), Expect = 2.0e-224, Sum P(4) = 2.0e-224
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1533 NCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1591
Query: 962 PV 963
+
Sbjct: 1592 VI 1593
Score = 74 (31.1 bits), Expect = 3.6e-102, Sum P(2) = 3.6e-102
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1298 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1349
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1350 KKVSNCNLYRLGKKKG 1365
Score = 73 (30.8 bits), Expect = 2.9e-103, Sum P(3) = 2.9e-103
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1701 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1741
Score = 46 (21.3 bits), Expect = 2.8e-118, Sum P(4) = 2.8e-118
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTL 274
L EE+ S + + ++ KV+KL + L + P + V ++ Q D +++
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQ---D-NYVSW 412
Query: 275 ISEHHNDVIQDIPEKER 291
+D ++I EKE+
Sbjct: 413 SDSEDDDEDEEIEEKEK 429
Score = 43 (20.2 bits), Expect = 2.0e-118, Sum P(5) = 2.0e-118
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 454 IGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDD 497
+GL IL+ K + P K+KKL++ + + A D++V D
Sbjct: 203 LGLTASILNGKCD--PAELEEKIKKLEKILKSNAETATDLVVLD 244
Score = 42 (19.8 bits), Expect = 2.0e-118, Sum P(5) = 2.0e-118
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE +K K + N
Sbjct: 413 SDSEDDDEDEEIEEKEKPETN 433
Score = 38 (18.4 bits), Expect = 1.9e-117, Sum P(4) = 1.9e-117
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 201 EVEVSIELIDKNVVLSEENLSN 222
+++VS EL N V +NL+N
Sbjct: 1166 QIDVSAELAAINGVSYNKNLAN 1187
Score = 38 (18.4 bits), Expect = 2.3e-98, Sum P(2) = 2.3e-98
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 534 NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPM 587
+E++ E EE ++ K+ + ES +++ G S EM V YPM P+
Sbjct: 1791 SEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQVY---YPMMRPL 1840
Score = 37 (18.1 bits), Expect = 1.5e-199, Sum P(4) = 1.5e-199
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 1436 DFEDDFLEYDQE 1447
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 988 (352.9 bits), Expect = 3.3e-224, Sum P(4) = 3.3e-224
Identities = 219/539 (40%), Positives = 308/539 (57%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E + ++ ++ LPINSPL+ + G
Sbjct: 618 INTAIGHINRYCARLPSDPFTHLAPKCKTREFPDG---LYRSTLYLPINSPLRAPIVGPP 674
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R A+ C+ L+E+ ELD+ LMPV KE + E + + + P ST
Sbjct: 675 MNCGRLADRAVALICCKKLHEIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 734
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C N P PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 735 KRRQCYPKAIPECLRNSYPKPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 794
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL L+ E L Y+F+ +L+L+K
Sbjct: 795 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLNLEQLELITRLHQYIFSHILRLEKP 854
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE---RENFV 295
+ F P ++ +Y ++P V+DS + ID+KF+ I + ++ IP + F+
Sbjct: 855 ALEFKPTVADCAYCVLPLNVVNDSGTLDIDFKFVEDIEK--SEARTGIPNTQYSAESPFI 912
Query: 296 FDESKFRDAVVMPW---YRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
F ++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY
Sbjct: 913 FKLEDYQDAVIIPRQVIYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKY 970
Query: 353 GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPE 412
L + NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPE
Sbjct: 971 NLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPE 1030
Query: 413 LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
LC IHP PASLWRK+V LPSILYRL+ LL A+E+R A + G+G L + +P +F
Sbjct: 1031 LCAIHPVPASLWRKAVCLPSILYRLHCLLTAEELRAQTAIDAGVGVKSLPDDFRYPNLDF 1090
Query: 473 GWKMKKLKEKYGWDTKDANDVIVD-DTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
GWK + + K + ++ V + D +N T DSA + + ++I D+ C
Sbjct: 1091 GWK-RSIDSKTFISNQSSSSVESESDCRLNKTTAPDSAASSAANSVIYMQINDQMSVNC 1148
Score = 843 (301.8 bits), Expect = 3.3e-224, Sum P(4) = 3.3e-224
Identities = 169/276 (61%), Positives = 208/276 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P+++ D L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TD
Sbjct: 1611 GYLKIPPRCMFEHPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHYNTITD 1670
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1671 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1730
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1731 AISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1790
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+TVW VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1791 YMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1849
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+
Sbjct: 1850 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKA 1885
Score = 264 (98.0 bits), Expect = 3.3e-224, Sum P(4) = 3.3e-224
Identities = 70/168 (41%), Positives = 98/168 (58%)
Query: 690 VENTIKENQPVHIVRQSFDNAS-NPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPG 748
V+N KENQP+ + + N+ N SK T+ E Y S + + K+ G
Sbjct: 1213 VQNLPKENQPI-LKECTLSNSDGNVSKPTS--DECPSTCTSDMHYDSGLSN-RHSSKTLG 1268
Query: 749 KSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVH 808
+ G+I T S+ S F +LE RLE +GDSFLK+AIT +L+CTYP+ H
Sbjct: 1269 PN--PGLILQALTLSNASDGF--NLE--------RLEMLGDSFLKHAITTYLFCTYPDAH 1316
Query: 809 EGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLPPGYFV 856
EG+LS++RSK+VSN NL++LGK+K M+ + F+P NWLPPGY V
Sbjct: 1317 EGRLSYMRSKKVSNCNLYRLGKKKGSPSRMVVSIFDPPVNWLPPGYIV 1364
Score = 168 (64.2 bits), Expect = 3.3e-224, Sum P(4) = 3.3e-224
Identities = 35/62 (56%), Positives = 42/62 (67%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C D QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1508 NCGADAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1566
Query: 962 PV 963
V
Sbjct: 1567 EV 1568
Score = 74 (31.1 bits), Expect = 7.5e-103, Sum P(2) = 7.5e-103
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1274 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1325
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1326 KKVSNCNLYRLGKKKG 1341
Score = 73 (30.8 bits), Expect = 9.5e-103, Sum P(2) = 9.5e-103
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1673 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1713
Score = 57 (25.1 bits), Expect = 1.3e-118, Sum P(4) = 1.3e-118
Identities = 23/90 (25%), Positives = 40/90 (44%)
Query: 208 LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQI-V 266
++ K L EE+ S + M ++ KV+KL + L + P + V ++ Q
Sbjct: 341 ILRKIHALCEEHFSPASLDMKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQDNY 399
Query: 267 IDWKFMTLISEHHNDVIQDIPEKERENFVF 296
+ W SE +D ++I EKE+ F
Sbjct: 400 VSWSD----SEDDDDEDEEIEEKEKTETSF 425
Score = 50 (22.7 bits), Expect = 3.5e-96, Sum P(4) = 3.5e-96
Identities = 15/54 (27%), Positives = 29/54 (53%)
Query: 460 ILDEKVEW-PPFNFGWKMKKLKEKYGWDTKDAN--DVIVD---DTEVNDTKEDD 507
I D V W PP G+ + + K W++ + + DV+V+ D + +D +++D
Sbjct: 1350 IFDPPVNWLPP---GYIVNQDKNSDKWESNETSGEDVMVNGKIDEDFDDEEDED 1400
Score = 42 (19.8 bits), Expect = 4.9e-117, Sum P(4) = 4.9e-117
Identities = 11/34 (32%), Positives = 21/34 (61%)
Query: 532 SGNEQENEDEEKLDKIKSDENKTESQGVEPWVEI 565
S ++ E++D+E ++I+ E KTE+ P+ I
Sbjct: 401 SWSDSEDDDDED-EEIEEKE-KTETSFPSPFTNI 432
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 982 (350.7 bits), Expect = 4.2e-224, Sum P(4) = 4.2e-224
Identities = 213/486 (43%), Positives = 289/486 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 684 MSCARLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVPT--VSDSEQIVIDWKFMTLI--SEHHNDVIQDIPEKERENFVF 296
+ F P ++++Y ++P V DS + ID+KFM I SE + KE F+F
Sbjct: 864 ALEFKPTEADSAYCVLPLNIVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMP-FIF 922
Query: 297 DESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQI 356
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 923 KLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDL 980
Query: 357 QNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLI 416
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC I
Sbjct: 981 TNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAI 1040
Query: 417 HPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKM 476
HP PASLWRK+V LPSILYRL+ LL A+E+R A++ G+G L +P +FGWK
Sbjct: 1041 HPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDFGWK- 1099
Query: 477 KKLKEK 482
K + K
Sbjct: 1100 KSIDSK 1105
Score = 841 (301.1 bits), Expect = 4.2e-224, Sum P(4) = 4.2e-224
Identities = 168/279 (60%), Positives = 210/279 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P+++ + L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TD
Sbjct: 1639 GCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITD 1698
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1699 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1758
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1759 AVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1819 YMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1877
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1878 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1916
Score = 270 (100.1 bits), Expect = 4.2e-224, Sum P(4) = 4.2e-224
Identities = 70/195 (35%), Positives = 109/195 (55%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL + I V+ T + P+ + S +N PS +L+ + L+ N N+ +
Sbjct: 1197 FCQGNQLNYCRQEIPVQPTT--SYPIQNLYSS-ENQPKPSNECTLLSNKYLDGNANRSTS 1253
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFD-FQPD---------LENHT-GPSP 781
G + + T + + + +T S +S P+ L N + G +
Sbjct: 1254 DGCPKMTLTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNL 1313
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1314 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1373
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1374 IFDPPVNWLPPGYIV 1388
Score = 170 (64.9 bits), Expect = 4.2e-224, Sum P(4) = 4.2e-224
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1533 NCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1591
Query: 962 PV 963
+
Sbjct: 1592 VI 1593
Score = 74 (31.1 bits), Expect = 3.6e-102, Sum P(2) = 3.6e-102
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1298 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1349
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1350 KKVSNCNLYRLGKKKG 1365
Score = 73 (30.8 bits), Expect = 5.7e-105, Sum P(4) = 5.7e-105
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1701 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1741
Score = 46 (21.3 bits), Expect = 5.8e-118, Sum P(4) = 5.8e-118
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTL 274
L EE+ S + + ++ KV+KL + L + P + V ++ Q D +++
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQ---D-NYVSW 412
Query: 275 ISEHHNDVIQDIPEKER 291
+D ++I EKE+
Sbjct: 413 SDSEDDDEDEEIEEKEK 429
Score = 43 (20.2 bits), Expect = 4.1e-118, Sum P(5) = 4.1e-118
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 454 IGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDD 497
+GL IL+ K + P K+KKL++ + + A D++V D
Sbjct: 203 LGLTASILNGKCD--PAELEEKIKKLEKILKSNAETATDLVVLD 244
Score = 42 (19.8 bits), Expect = 4.1e-118, Sum P(5) = 4.1e-118
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE +K K + N
Sbjct: 413 SDSEDDDEDEEIEEKEKPETN 433
Score = 38 (18.4 bits), Expect = 2.6e-201, Sum P(5) = 2.6e-201
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 538 NEDEEKLDKIKSDENKTES 556
N+D+ DK + DE E+
Sbjct: 1389 NQDKSNTDKWEKDETTKEN 1407
Score = 38 (18.4 bits), Expect = 4.0e-117, Sum P(4) = 4.0e-117
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 201 EVEVSIELIDKNVVLSEENLSN 222
+++VS EL N V +NL+N
Sbjct: 1166 QIDVSAELAAINGVSYNKNLAN 1187
Score = 38 (18.4 bits), Expect = 2.3e-98, Sum P(2) = 2.3e-98
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 534 NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPM 587
+E++ E EE ++ K+ + ES +++ G S EM V YPM P+
Sbjct: 1791 SEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQVY---YPMMRPL 1840
Score = 37 (18.1 bits), Expect = 2.6e-201, Sum P(5) = 2.6e-201
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 1436 DFEDDFLEYDQE 1447
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 970 (346.5 bits), Expect = 8.9e-223, Sum P(4) = 8.9e-223
Identities = 213/490 (43%), Positives = 290/490 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELK---ELDNDLMPVTKEFINLYENTEPVVPKTPEIETYP 117
M LA R+ A+ C L++++ ELD+ LMPV KE + E + + + P
Sbjct: 684 MSCARLAERVVALICCEKLHKIEYLGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRP 743
Query: 118 DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
STKRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 GSTKRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTR 803
Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L
Sbjct: 804 CFGILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRL 863
Query: 238 KKYLMLFDPNCSENSYFIVPT---VSDSEQIVIDWKFMTLI--SEHHNDVIQDIPEKERE 292
+K + F P ++++Y ++P V DS + ID+KFM I SE + KE
Sbjct: 864 EKPALEFKPTEADSAYCVLPLNIEVDDSSTLDIDFKFMEDIEKSEARTGIPSTQYTKEMP 923
Query: 293 NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
F+F ++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY
Sbjct: 924 -FIFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKY 980
Query: 353 GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPE 412
L + NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPE
Sbjct: 981 NLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPE 1040
Query: 413 LCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNF 472
LC IHP PASLWRK+V LPSILYRL+ LL A+E+R A++ G+G L +P +F
Sbjct: 1041 LCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTATDAGVGVKSLPADFRYPNLDF 1100
Query: 473 GWKMKKLKEK 482
GWK K + K
Sbjct: 1101 GWK-KSIDSK 1109
Score = 841 (301.1 bits), Expect = 8.9e-223, Sum P(4) = 8.9e-223
Identities = 168/279 (60%), Positives = 210/279 (75%)
Query: 956 GLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTD 1012
G IPP +P+++ + L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TD
Sbjct: 1643 GCLKIPPRCMFDHPDAEKTLNHLISGFENFEKKINYSFKNKAYLLQAFTHASYHYNTITD 1702
Query: 1013 CYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
CYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK
Sbjct: 1703 CYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFK 1762
Query: 1073 HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAI 1130
+SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAI
Sbjct: 1763 AVSPELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1822
Query: 1131 YLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRV 1190
Y+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ V
Sbjct: 1823 YMDSGMSLEMVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-V 1881
Query: 1191 RVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
RVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1882 RVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1920
Score = 270 (100.1 bits), Expect = 8.9e-223, Sum P(4) = 8.9e-223
Identities = 70/195 (35%), Positives = 109/195 (55%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL + I V+ T + P+ + S +N PS +L+ + L+ N N+ +
Sbjct: 1201 FCQGNQLNYCRQEIPVQPTT--SYPIQNLYSS-ENQPKPSNECTLLSNKYLDGNANRSTS 1257
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFD-FQPD---------LENHT-GPSP 781
G + + T + + + +T S +S P+ L N + G +
Sbjct: 1258 DGCPKMTLTTSTSTALNLSKDKVDSEKNTSSGYSSKTLGPNPGLILQALTLSNASDGFNL 1317
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1318 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1377
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1378 IFDPPVNWLPPGYIV 1392
Score = 170 (64.9 bits), Expect = 8.9e-223, Sum P(4) = 8.9e-223
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1537 NCGVDAGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1595
Query: 962 PV 963
+
Sbjct: 1596 VI 1597
Score = 74 (31.1 bits), Expect = 7.2e-101, Sum P(2) = 7.2e-101
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1302 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1353
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1354 KKVSNCNLYRLGKKKG 1369
Score = 73 (30.8 bits), Expect = 1.2e-103, Sum P(4) = 1.2e-103
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1705 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1745
Score = 46 (21.3 bits), Expect = 5.9e-118, Sum P(4) = 5.9e-118
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTL 274
L EE+ S + + ++ KV+KL + L + P + V ++ Q D +++
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQ---D-NYVSW 412
Query: 275 ISEHHNDVIQDIPEKER 291
+D ++I EKE+
Sbjct: 413 SDSEDDDEDEEIEEKEK 429
Score = 43 (20.2 bits), Expect = 4.2e-118, Sum P(5) = 4.2e-118
Identities = 14/44 (31%), Positives = 24/44 (54%)
Query: 454 IGLGKVILDEKVEWPPFNFGWKMKKLKEKYGWDTKDANDVIVDD 497
+GL IL+ K + P K+KKL++ + + A D++V D
Sbjct: 203 LGLTASILNGKCD--PAELEEKIKKLEKILKSNAETATDLVVLD 244
Score = 42 (19.8 bits), Expect = 4.2e-118, Sum P(5) = 4.2e-118
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE +K K + N
Sbjct: 413 SDSEDDDEDEEIEEKEKPETN 433
Score = 38 (18.4 bits), Expect = 5.7e-200, Sum P(5) = 5.7e-200
Identities = 7/19 (36%), Positives = 11/19 (57%)
Query: 538 NEDEEKLDKIKSDENKTES 556
N+D+ DK + DE E+
Sbjct: 1393 NQDKSNTDKWEKDETTKEN 1411
Score = 38 (18.4 bits), Expect = 4.1e-117, Sum P(4) = 4.1e-117
Identities = 9/22 (40%), Positives = 14/22 (63%)
Query: 201 EVEVSIELIDKNVVLSEENLSN 222
+++VS EL N V +NL+N
Sbjct: 1170 QIDVSAELAAINGVSYNKNLAN 1191
Score = 38 (18.4 bits), Expect = 4.5e-97, Sum P(2) = 4.5e-97
Identities = 16/54 (29%), Positives = 27/54 (50%)
Query: 534 NEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPM 587
+E++ E EE ++ K+ + ES +++ G S EM V YPM P+
Sbjct: 1795 SEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM-SLEMVWQVY---YPMMRPL 1844
Score = 37 (18.1 bits), Expect = 5.7e-200, Sum P(5) = 5.7e-200
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 1440 DFEDDFLEYDQE 1451
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 984 (351.4 bits), Expect = 6.0e-219, Sum P(4) = 6.0e-219
Identities = 213/485 (43%), Positives = 287/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI VNRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 626 INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 682
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 683 MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C P PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 743 KRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 803 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P ++++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 863 ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 923 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 980
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 981 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1099
Query: 478 KLKEK 482
+ K
Sbjct: 1100 SIDSK 1104
Score = 851 (304.6 bits), Expect = 6.0e-219, Sum P(4) = 6.0e-219
Identities = 173/291 (59%), Positives = 215/291 (73%)
Query: 944 GPRGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAM 1000
G R ++L G IPP +P++ L+ GF+ FE+ INYRFK+K+YLLQA
Sbjct: 1626 GYRASVLKDLEYGCLKIPPRCMFDHPDADRTLRHLISGFENFEKKINYRFKNKAYLLQAF 1685
Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
THASY NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFAS
Sbjct: 1686 THASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFAS 1745
Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKA 1118
LAV+ +H +FK +SP L VI FV+ Q E + + L E DE EDIEVPKA
Sbjct: 1746 LAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKA 1805
Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+F
Sbjct: 1806 MGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKF 1865
Query: 1179 SKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
S E+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1866 SPAERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1915
Score = 209 (78.6 bits), Expect = 6.0e-219, Sum P(4) = 6.0e-219
Identities = 66/195 (33%), Positives = 99/195 (50%)
Query: 676 FYEGQ-LELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G L K I V+ T + P+ + +++N PS +L+ + L+ N N +
Sbjct: 1196 FCQGNHLNYYKQEIPVQPTT--SYPIQNL-YNYENQPKPSDECTLLSNKYLDGNANTSTS 1252
Query: 733 YGS-----VEKDVKTEPKSPGKSCEH-----GIIRNTSTPSDFSFDFQPDLENHT-GPSP 781
GS V +T P ++ G T P+ L N + G +
Sbjct: 1253 DGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNL 1312
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTISSALI--LHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1370
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1371 IFDPPVNWLPPGYVV 1385
Score = 170 (64.9 bits), Expect = 6.0e-219, Sum P(4) = 6.0e-219
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1532 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1590
Query: 962 PV 963
+
Sbjct: 1591 VI 1592
Score = 73 (30.8 bits), Expect = 3.7e-105, Sum P(3) = 3.7e-105
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1700 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1740
Score = 58 (25.5 bits), Expect = 1.1e-100, Sum P(2) = 1.1e-100
Identities = 24/73 (32%), Positives = 37/73 (50%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALV 1053
+LQA+T L+ +D + +RLE LGD+ L + IT + H G L+ +RS V
Sbjct: 1297 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITT-ISSALILHE-GRLSYMRSKKV 1349
Query: 1054 NNIIFASLAVRLG 1066
+N L + G
Sbjct: 1350 SNCNLYRLGKKKG 1362
Score = 53 (23.7 bits), Expect = 1.6e-202, Sum P(4) = 1.6e-202
Identities = 20/54 (37%), Positives = 26/54 (48%)
Query: 460 ILDEKVEW-PPFNFGWKMKKLKEKYGWD--TKD---ANDVIVDDTEVNDTKEDD 507
I D V W PP + K EK+ D TKD AN + DD E + +E+D
Sbjct: 1371 IFDPPVNWLPPGYVVNQDKSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEED 1424
Score = 43 (20.2 bits), Expect = 3.4e-113, Sum P(5) = 3.4e-113
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDP 246
L EE+ S + + ++ KV+KL + L + P
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKP 389
Score = 41 (19.5 bits), Expect = 3.4e-113, Sum P(5) = 3.4e-113
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E + EDEE +K K + N
Sbjct: 413 SDSEDDEEDEEIEEKEKPETN 433
Score = 39 (18.8 bits), Expect = 4.9e-201, Sum P(4) = 4.9e-201
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 605 VEDDFRENEKED 616
++DDF E E+E+
Sbjct: 1411 LDDDFEEEEEEE 1422
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 984 (351.4 bits), Expect = 6.9e-218, Sum P(4) = 6.9e-218
Identities = 213/485 (43%), Positives = 287/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI VNRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 626 INTAIGHVNRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 682
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 683 MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 742
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C P PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 743 KRRQCYPKAIPECLRESYPRPGQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 802
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 803 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 862
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P ++++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 863 ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 922
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 923 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 980
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 981 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1040
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1041 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1099
Query: 478 KLKEK 482
+ K
Sbjct: 1100 SIDSK 1104
Score = 847 (303.2 bits), Expect = 6.9e-218, Sum P(4) = 6.9e-218
Identities = 173/291 (59%), Positives = 214/291 (73%)
Query: 944 GPRGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAM 1000
G R ++L G IPP +PE+ L+ GF+ FE+ INYRFK+K+YLLQA
Sbjct: 1629 GYRASVLKDLEYGCLKIPPRCMFDHPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAF 1688
Query: 1001 THASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFAS 1060
THASY NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFAS
Sbjct: 1689 THASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFAS 1748
Query: 1061 LAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKA 1118
LAV+ +H +FK +SP L VI FV+ Q E + + L E DE EDIEVPKA
Sbjct: 1749 LAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKA 1808
Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
+GD+FES+AGAIY+DSGMSL+TVW+VYY +M+ IE+ S +VP+SP+RELLE+EPE +F
Sbjct: 1809 MGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPEITKF 1868
Query: 1179 SKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
S E+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1869 SPAERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1918
Score = 203 (76.5 bits), Expect = 6.9e-218, Sum P(4) = 6.9e-218
Identities = 66/196 (33%), Positives = 100/196 (51%)
Query: 676 FYEGQ-LELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G L K I V+ T + P+ + +++N PS +L+ + L+ N N +
Sbjct: 1196 FCQGNHLNYYKQEIPVQPTT--SYPIQNL-YNYENQPKPSDECTLLSNKYLDGNANTSTS 1252
Query: 733 YGS-----VEKDVKTEPKSPGKSCEH-----GIIRNTSTPSDFSFDFQPDLENHT-GPSP 781
GS V +T P ++ G T P+ L N + G +
Sbjct: 1253 DGSPVTAAVPGTTETGEAPPDRTASEQSPSPGYSSRTLGPNPGLILQALTLSNASDGFNL 1312
Query: 782 KRLETIGDSFLKYAIT-IFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GDSFLK+AIT + L + HEG+LS++RSK+VSN NL++LGK+K M+
Sbjct: 1313 ERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVV 1372
Query: 841 TKFEPRDNWLPPGYFV 856
+ F+P N LPPGY V
Sbjct: 1373 SIFDPPVNGLPPGYVV 1388
Score = 170 (64.9 bits), Expect = 6.9e-218, Sum P(4) = 6.9e-218
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1535 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1593
Query: 962 PV 963
+
Sbjct: 1594 VI 1595
Score = 73 (30.8 bits), Expect = 8.7e-104, Sum P(3) = 8.7e-104
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1703 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1743
Score = 58 (25.5 bits), Expect = 1.1e-100, Sum P(2) = 1.1e-100
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITR----HLYEDERAHSPGTLTDLR 1049
+LQA+T L+ +D + +RLE LGD+ L + IT L D AH G L+ +R
Sbjct: 1297 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTVSLSALILD--AHE-GRLSYMR 1348
Query: 1050 SALVNNIIFASLAVRLG 1066
S V+N L + G
Sbjct: 1349 SKKVSNCNLYRLGKKKG 1365
Score = 43 (20.2 bits), Expect = 6.3e-112, Sum P(5) = 6.3e-112
Identities = 10/32 (31%), Positives = 18/32 (56%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDP 246
L EE+ S + + ++ KV+KL + L + P
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKP 389
Score = 41 (19.5 bits), Expect = 6.3e-112, Sum P(5) = 6.3e-112
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E + EDEE +K K + N
Sbjct: 413 SDSEDDEEDEEIEEKEKPETN 433
Score = 40 (19.1 bits), Expect = 1.0e-200, Sum P(4) = 1.0e-200
Identities = 14/36 (38%), Positives = 19/36 (52%)
Query: 477 KKLKEKYGWD--TKD---ANDVIVDDTEVNDTKEDD 507
K EK+ D TKD AN + DD E + +E+D
Sbjct: 1392 KSNTEKWEKDEMTKDCMLANGKLDDDFEEEEEEEED 1427
Score = 39 (18.8 bits), Expect = 1.3e-200, Sum P(4) = 1.3e-200
Identities = 6/12 (50%), Positives = 10/12 (83%)
Query: 605 VEDDFRENEKED 616
++DDF E E+E+
Sbjct: 1414 LDDDFEEEEEEE 1425
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 993 (354.6 bits), Expect = 1.3e-210, Sum P(3) = 1.3e-210
Identities = 213/485 (43%), Positives = 289/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M + LA R+ A+ C L+++ ELD LMPV KE + E + + + P ST
Sbjct: 684 MDSVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS++ L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P +E++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 864 ALEFKPTGAESAYCVLPLNVVNDSGTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 924 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 981
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 982 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1100
Query: 478 KLKEK 482
+ K
Sbjct: 1101 SIDSK 1105
Score = 857 (306.7 bits), Expect = 1.3e-210, Sum P(3) = 1.3e-210
Identities = 175/302 (57%), Positives = 220/302 (72%)
Query: 933 EALIGAYLIECGPRGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYR 989
++L G+ GPR + G IPP +P+++ + L+ GF+ FE+ INYR
Sbjct: 1611 KSLSGSCAAPVGPRSSAGKDLEYGCLKIPPRCMFDHPDAEKTLNHLISGFETFEKKINYR 1670
Query: 990 FKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLR 1049
FK+K+YLLQA THASY NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLR
Sbjct: 1671 FKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLR 1730
Query: 1050 SALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDE 1109
SALVNN IFASLAV+ +H +FK +SP L VI FVK Q E + + L E DE
Sbjct: 1731 SALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDE 1790
Query: 1110 A--EDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRE 1167
EDIEVPKA+GD+FES+AGAIY+DSGMSL+ VW+VYY +M+ IE+ S +VP+SP+RE
Sbjct: 1791 EKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRE 1850
Query: 1168 LLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSA 1227
LLE+EPE A+FS E+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+
Sbjct: 1851 LLEMEPETAKFSPAERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKAN 1909
Query: 1228 KP 1229
+P
Sbjct: 1910 QP 1911
Score = 260 (96.6 bits), Expect = 1.3e-210, Sum P(3) = 1.3e-210
Identities = 70/195 (35%), Positives = 106/195 (54%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEI-LE-NINKLNT 732
F +G QL K I V+ T + P+ + +++N PS +L+ L+ N N +
Sbjct: 1196 FCQGNQLNYFKQEIPVQPTT--SYPIQNL-YNYENQPKPSNECPLLSNTYLDGNANTSTS 1252
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF-DFQPD---------LENHT-GPSP 781
GS + K+ + + S +S P+ L N + G +
Sbjct: 1253 DGSPAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALTLSNASDGFNL 1312
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1313 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1372
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1373 IFDPPVNWLPPGYVV 1387
Score = 171 (65.3 bits), Expect = 3.0e-138, Sum P(3) = 3.0e-138
Identities = 37/86 (43%), Positives = 51/86 (59%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1530 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1588
Query: 962 PVTNPESKHLSDVLLDGFDKFEESIN 987
+ + D + ++S++
Sbjct: 1589 VIKRTSREKALDPAQENGSSQQKSLS 1614
Score = 78 (32.5 bits), Expect = 8.9e-104, Sum P(2) = 8.9e-104
Identities = 37/117 (31%), Positives = 55/117 (47%)
Query: 961 PPV-TNPESKHLSDVLLDGFDKFEE-SINYRFK----DKSYLLQAMTHASYFLNTLTDCY 1014
P V T P + L D D + S+ Y + + +LQA+T L+ +D +
Sbjct: 1256 PAVSTMPAMMNAVKALKDRMDSEQSPSVGYSSRTLGPNPGLILQALT-----LSNASDGF 1310
Query: 1015 --QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
+RLE LGD+ L + IT +L Y D AH G L+ +RS V+N L + G
Sbjct: 1311 NLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRSKKVSNCNLYRLGKKKG 1364
Score = 73 (30.8 bits), Expect = 3.0e-103, Sum P(2) = 3.0e-103
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1696 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1736
Score = 49 (22.3 bits), Expect = 7.9e-106, Sum P(3) = 7.9e-106
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 208 LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQI-V 266
L+ K L EE S + + Y+ KV+KL + L + P + V ++ Q
Sbjct: 351 LLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPY-ERQQFESVEWYNNRNQDNY 409
Query: 267 IDWKFMTLISEHHNDVIQDIPEKER 291
+ W SE +D ++I EKE+
Sbjct: 410 VSWSD----SEDDDDD-EEIEEKEK 429
Score = 39 (18.8 bits), Expect = 8.9e-105, Sum P(3) = 8.9e-105
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E +++DEE +K K + N
Sbjct: 413 SDSEDDDDDEEIEEKEKPETN 433
Score = 37 (18.1 bits), Expect = 1.9e-99, Sum P(2) = 1.9e-99
Identities = 9/36 (25%), Positives = 17/36 (47%)
Query: 513 ICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIK 548
+ + K ++ + DS + EDEEK + I+
Sbjct: 1762 VIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIE 1797
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 992 (354.3 bits), Expect = 2.3e-210, Sum P(3) = 2.3e-210
Identities = 218/533 (40%), Positives = 308/533 (57%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 684 MSCVRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRDSYPRPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL +LS + L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFMLSLQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P ++++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 864 ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYTKETPFVFK 923
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 924 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 981
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 982 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK-K 1100
Query: 478 KLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVC 530
+ K +++ D+ + T ++A ++ + +E D+ C
Sbjct: 1101 SIDSKSFISISNSSSAENDNYCKHSTIVPENAAHQGANRTSSLENHDQMSVNC 1153
Score = 856 (306.4 bits), Expect = 2.3e-210, Sum P(3) = 2.3e-210
Identities = 173/289 (59%), Positives = 216/289 (74%)
Query: 946 RGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTH 1002
R ++L S G IPP +P++ + L+ GF+ FE+ INYRFK+K+YLLQA TH
Sbjct: 1630 RSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTH 1689
Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
ASY NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLA
Sbjct: 1690 ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA 1749
Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALG 1120
V+ +H +FK +SP L VI FV+ Q E + + L E DE EDIEVPKA+G
Sbjct: 1750 VKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 1809
Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK 1180
D+FES+AGAIY+DSGMSL+TVW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS
Sbjct: 1810 DIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSP 1869
Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
E+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1870 AERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1917
Score = 260 (96.6 bits), Expect = 2.3e-210, Sum P(3) = 2.3e-210
Identities = 75/196 (38%), Positives = 107/196 (54%)
Query: 676 FYEG-QLELIKNRIDVENTIKEN-QPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLN 731
F +G QL K I V+ T + Q ++ S++N PS +L+ + L+ N NK
Sbjct: 1196 FCQGNQLNYYKQEIPVQPTTSYSIQNLY----SYENQPQPSDECTLLSNKYLDGNANKST 1251
Query: 732 TYGSVEKDVK-----TEPKSPGK-----SCEHGIIRNTSTPSDFSFDFQPDLENHT-GPS 780
+ GS V T G+ S G T P+ L N + G +
Sbjct: 1252 SDGSPVMAVMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFN 1311
Query: 781 PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+
Sbjct: 1312 LERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVV 1371
Query: 841 TKFEPRDNWLPPGYFV 856
+ F+P NWLPPGY V
Sbjct: 1372 SIFDPPVNWLPPGYVV 1387
Score = 171 (65.3 bits), Expect = 4.0e-138, Sum P(3) = 4.0e-138
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1534 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1592
Query: 962 PVTNPESKHLSDVLLDGFDKFEESIN 987
+ + + + F+ +++++
Sbjct: 1593 VIKRTDREKALCPTRENFNSQQKNLS 1618
Score = 74 (31.1 bits), Expect = 3.1e-103, Sum P(2) = 3.1e-103
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1297 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1348
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1349 KKVSNCNLYRLGKKKG 1364
Score = 73 (30.8 bits), Expect = 6.0e-106, Sum P(4) = 6.0e-106
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1702 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1742
Score = 46 (21.3 bits), Expect = 2.3e-105, Sum P(3) = 2.3e-105
Identities = 18/77 (23%), Positives = 36/77 (46%)
Query: 215 LSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTL 274
L EE+ S + + ++ KV+KL + L + P + V ++ Q D +++
Sbjct: 358 LCEEHFSPASLDLKFVTPKVIKLLEILRKYKPY-ERQQFESVEWYNNRNQ---D-NYVSW 412
Query: 275 ISEHHNDVIQDIPEKER 291
+D ++I EKE+
Sbjct: 413 SDSEDDDEDEEIEEKEK 429
Score = 42 (19.8 bits), Expect = 6.0e-105, Sum P(3) = 6.0e-105
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE +K K + N
Sbjct: 413 SDSEDDDEDEEIEEKEKPETN 433
Score = 37 (18.1 bits), Expect = 3.2e-188, Sum P(4) = 3.2e-188
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 1437 DYEDDFLEYDQE 1448
Score = 37 (18.1 bits), Expect = 3.2e-188, Sum P(4) = 3.2e-188
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 531 DSGNEQENEDEEKL 544
D E+E+E+EE L
Sbjct: 1414 DEDYEEEDEEEESL 1427
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 993 (354.6 bits), Expect = 8.0e-209, Sum P(3) = 8.0e-209
Identities = 213/485 (43%), Positives = 288/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 617 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 673
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD LMPV KE + E + + + P ST
Sbjct: 674 MGCVRLAERVVALICCEKLHKIGELDEHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 733
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 734 KRRQCYPKAIPECLRESYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 793
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS++ L Y+F+ +L+L+K
Sbjct: 794 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSQQMLELVTRLHQYIFSHILRLEKP 853
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P +E++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 854 ALEFQPAGAESAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 913
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 914 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 971
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 972 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1031
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1032 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPADFRYPNLDFGWK-K 1090
Query: 478 KLKEK 482
+ K
Sbjct: 1091 SIDSK 1095
Score = 841 (301.1 bits), Expect = 8.0e-209, Sum P(3) = 8.0e-209
Identities = 176/333 (52%), Positives = 230/333 (69%)
Query: 903 CTVDMNVQSVVPYNLVTQHSIP-DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
C++ + V V+ + S P ++ + ++ G+ PR + G IP
Sbjct: 1572 CSLGLKVLPVIKRTSRDKASYPAQENSSSQQKSPSGSCAAAVSPRSSAGKDLEYGCLKIP 1631
Query: 962 P---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLE 1018
P +P+++ + L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TDCYQRLE
Sbjct: 1632 PRCMFDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLE 1691
Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
FLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L
Sbjct: 1692 FLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPEL 1751
Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAIYLDSGM 1136
VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAIY+DSGM
Sbjct: 1752 FHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM 1811
Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
SL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ VRVTVEV
Sbjct: 1812 SLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-VRVTVEV 1870
Query: 1197 FGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1871 VGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1903
Score = 259 (96.2 bits), Expect = 8.0e-209, Sum P(3) = 8.0e-209
Identities = 71/196 (36%), Positives = 110/196 (56%)
Query: 676 FYEG-QLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G QL K I V+ T + P+ + +++N PS +L+ + L+ N N +
Sbjct: 1186 FCQGNQLTYFKQEIPVQPTT--SYPIQNL-YNYENQPTPSNECPLLSNKYLDGNANTSTS 1242
Query: 733 YGSVEKDVKTEPKSPGKSCEHGIIRNTSTPS--DFSFDFQPD---------LENHT-GPS 780
GS + + ++ E G + +PS S P+ L N + G +
Sbjct: 1243 DGSPAGSPRPAMMTAVEALE-GRTDSEQSPSVGHSSRTLGPNPGLILQALTLSNASDGFN 1301
Query: 781 PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK++ M+
Sbjct: 1302 LERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKQGLPSRMVV 1361
Query: 841 TKFEPRDNWLPPGYFV 856
+ F+P NWLPPGY V
Sbjct: 1362 SIFDPPVNWLPPGYVV 1377
Score = 170 (64.9 bits), Expect = 4.7e-138, Sum P(3) = 4.7e-138
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1522 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1580
Query: 962 PV 963
+
Sbjct: 1581 VI 1582
Score = 74 (31.1 bits), Expect = 2.3e-103, Sum P(2) = 2.3e-103
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1287 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1338
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1339 KKVSNCNLYRLGKKQG 1354
Score = 73 (30.8 bits), Expect = 1.1e-104, Sum P(3) = 1.1e-104
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1688 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1728
Score = 49 (22.3 bits), Expect = 1.6e-103, Sum P(3) = 1.6e-103
Identities = 23/85 (27%), Positives = 38/85 (44%)
Query: 208 LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDSEQI-V 266
L+ K L EE S + + Y+ KV+KL + L + P + V ++ Q
Sbjct: 341 LLRKIHALCEEYFSPASLDLKYVTPKVMKLLEILRKYKPY-ERQQFESVEWYNNRNQDNY 399
Query: 267 IDWKFMTLISEHHNDVIQDIPEKER 291
+ W SE +D ++I EKE+
Sbjct: 400 VSWSD----SEDDDDD-EEIEEKEK 419
Score = 39 (18.8 bits), Expect = 1.1e-104, Sum P(3) = 1.1e-104
Identities = 7/31 (22%), Positives = 15/31 (48%)
Query: 737 EKDVKTEPKSPGKSCEHGIIRNTSTPSDFSF 767
+++ ++ KSP SC + +S D +
Sbjct: 1595 QENSSSQQKSPSGSCAAAVSPRSSAGKDLEY 1625
Score = 39 (18.8 bits), Expect = 1.8e-102, Sum P(3) = 1.8e-102
Identities = 8/21 (38%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E +++DEE +K K + N
Sbjct: 403 SDSEDDDDDEEIEEKEKPETN 423
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 969 (346.2 bits), Expect = 4.2e-206, Sum P(3) = 4.2e-206
Identities = 212/487 (43%), Positives = 288/487 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
M+ AI VNRYCARLPSD FT LAP E+ + ++ LPINSPL+ VTG
Sbjct: 613 MNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGG---YRSTLFLPINSPLRVPVTGPV 669
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA + A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 670 MNCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 729
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ K + C C P PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 730 KRRQCSPKAIPECLRGCYPVPEQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 789
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS E L Y+F+ +L+L+K
Sbjct: 790 ILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFSLSAEQLELITRLHQYIFSHILRLEKP 849
Query: 241 LMLFDPNCSENSYFIVPT--VSDSEQIVIDWKFMTLISEHHNDVIQDIPEKE--REN-FV 295
+ F P ++++Y ++P V DS + +D+KFM I + + IP + ++N F+
Sbjct: 850 ALEFKPVEADSAYCVLPLNIVEDSNTLDLDFKFMEDIEKSEARI--GIPNTQYTKQNPFI 907
Query: 296 FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQ 355
F ++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L
Sbjct: 908 FKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLD 965
Query: 356 IQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCL 415
+ N+ QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC
Sbjct: 966 LSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCA 1025
Query: 416 IHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWK 475
IHP PASLWRK+V LPSILYRL+ LL A+E+R+ A + G+G L +P +FGWK
Sbjct: 1026 IHPIPASLWRKAVCLPSILYRLHCLLTAEELRSQTAIDAGVGAQTLPPDFRYPNLDFGWK 1085
Query: 476 MKKLKEK 482
K + K
Sbjct: 1086 -KSIDSK 1091
Score = 841 (301.1 bits), Expect = 4.2e-206, Sum P(3) = 4.2e-206
Identities = 172/287 (59%), Positives = 212/287 (73%)
Query: 948 ALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHAS 1004
A L WL IPP +P+++ + L+ GF FE INY FK+K+YLLQA THAS
Sbjct: 1578 AELQYGWLK---IPPRCMFEHPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHAS 1634
Query: 1005 YFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
Y NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+
Sbjct: 1635 YHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVK 1694
Query: 1065 LGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDL 1122
+H +FK +SP L VI FV+ Q E + + L E DE EDIEVPKA+GD+
Sbjct: 1695 YDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDI 1754
Query: 1123 FESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPE 1182
FES+AGAIY+DSGMSL+TVW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E
Sbjct: 1755 FESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAE 1814
Query: 1183 KLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 1815 RTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 1860
Score = 257 (95.5 bits), Expect = 4.2e-206, Sum P(3) = 4.2e-206
Identities = 45/75 (60%), Positives = 61/75 (81%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ +
Sbjct: 1295 ERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVS 1354
Query: 842 KFEPRDNWLPPGYFV 856
F+P NWLPPGY V
Sbjct: 1355 IFDPPVNWLPPGYVV 1369
Score = 175 (66.7 bits), Expect = 7.2e-136, Sum P(3) = 7.2e-136
Identities = 46/107 (42%), Positives = 58/107 (54%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C D+ QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 1510 NCGTDIGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 1568
Query: 962 PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLN 1008
P +S S L G+ K + D L + S FLN
Sbjct: 1569 P--EKQSSGGSAELQYGWLKIPPRCMFEHPDAERTLNHLI--SGFLN 1611
Score = 74 (31.1 bits), Expect = 7.5e-101, Sum P(2) = 7.5e-101
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1279 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1330
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1331 KKVSNCNLYRLGKKKG 1346
Score = 73 (30.8 bits), Expect = 7.1e-104, Sum P(3) = 7.1e-104
Identities = 20/42 (47%), Positives = 25/42 (59%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHE-GKLSHLRSKQVSN 822
+RLE +GD+ L Y IT LY P H G L+ LRS V+N
Sbjct: 1645 QRLEFLGDAILDYLITKHLY-EDPRQHSPGVLTDLRSALVNN 1685
Score = 55 (24.4 bits), Expect = 8.7e-185, Sum P(3) = 8.7e-185
Identities = 22/65 (33%), Positives = 28/65 (43%)
Query: 460 ILDEKVEW-PPFNFGWKMKKLKEKYGWD-TKD-ANDVIVDDTEVNDTKEDDSAVNEICTE 516
I D V W PP + K +K+ D KD AN DD + +D E + A E E
Sbjct: 1355 IFDPPVNWLPPGYVVNQDKSSTDKWDSDENKDLANGKASDDEDEDDDDEPEEAEVEPSKE 1414
Query: 517 IAKVE 521
VE
Sbjct: 1415 DVNVE 1419
Score = 50 (22.7 bits), Expect = 2.9e-184, Sum P(3) = 2.9e-184
Identities = 10/21 (47%), Positives = 13/21 (61%)
Query: 538 NEDEEKLDKIKSDENKTESQG 558
N+D+ DK SDENK + G
Sbjct: 1370 NQDKSSTDKWDSDENKDLANG 1390
Score = 42 (19.8 bits), Expect = 1.4e-102, Sum P(4) = 1.4e-102
Identities = 9/21 (42%), Positives = 14/21 (66%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E ++EDEE K K++ N
Sbjct: 399 SDSEDDDEDEEAEAKEKTEAN 419
Score = 39 (18.8 bits), Expect = 1.4e-102, Sum P(4) = 1.4e-102
Identities = 10/39 (25%), Positives = 21/39 (53%)
Query: 208 LIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLMLFDP 246
++ K L EE+ S + + ++ KV++L + L + P
Sbjct: 337 ILRKIHALCEEHFSPASLDLKFVTPKVIRLLEILHEYKP 375
Score = 38 (18.4 bits), Expect = 1.1e-79, Sum P(2) = 1.1e-79
Identities = 8/20 (40%), Positives = 12/20 (60%)
Query: 39 MFTCSIRLPINSPLKRSVTG 58
+F CS+ L + P K+S G
Sbjct: 1557 LFLCSLGLKVLPPEKQSSGG 1576
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 738 (264.8 bits), Expect = 4.8e-166, Sum P(4) = 4.8e-166
Identities = 153/277 (55%), Positives = 197/277 (71%)
Query: 957 LKVIPPVTNPESK--HLSDVLLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDC 1013
L+ I TNP + L+++ F + EE I YRFK+++YL+QA THASY N +T C
Sbjct: 1618 LRFIDTPTNPNASLNFLNNLWQQFQFTQLEEKIGYRFKERAYLVQAFTHASYINNRVTGC 1677
Query: 1014 YQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH 1073
YQRLEFLGDA+LDY+ITR+L+ED R +SPG LTDLRSALVNN IFASLAV+ F F
Sbjct: 1678 YQRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIA 1737
Query: 1074 LSPGLHEVIQRFVKMQAENDF--TLNQEYYLM--EGECDEA--EDIEVPKALGDLFESVA 1127
+ PGL+ +I++FVK+ +E +F N E Y++ E E DE EDIEVPKA+GD+FESVA
Sbjct: 1738 MCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFESVA 1797
Query: 1128 GAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADG 1187
GAIYLDSG +LDT W+V + +M+ IE + P+SPIREL+E E RFSK E++ +
Sbjct: 1798 GAIYLDSGRNLDTTWQVIFHMMRGTIELCCANPPRSPIRELMEFEQSKVRFSKMERILES 1857
Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHL 1224
+VRVTVEV + G+GRNY IAK TAAK ALK+L
Sbjct: 1858 GKVRVTVEVVNNMRFTGMGRNYRIAKATAAKRALKYL 1894
Score = 710 (255.0 bits), Expect = 4.8e-166, Sum P(4) = 4.8e-166
Identities = 178/490 (36%), Positives = 262/490 (53%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVT-GH 59
M AI ++NRYC++LPSDIFTRL P I I+E+ + + LPINSP+K ++ +
Sbjct: 568 MSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLLPINSPIKHAIVLKN 627
Query: 60 KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI-NLYENTEPVVPK-TPEIETYP 117
MP K A A+EACR L+ ELD++L+P +E I L E+ + + P I
Sbjct: 628 PMPNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEHIDEEPDEYAPGIAAKV 687
Query: 118 DSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQ 177
S+KR+Q Y K++A + C++YA +++ N + RK P N
Sbjct: 688 GSSKRKQLYDKKIARALNESFVEADKECFIYAFELERFREAELTLNPKRRKFEDPFNYEY 747
Query: 178 GLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKL 237
L+ K IPK+ FP+F R G ++V + + K ++ L +F +YLFT+VL++
Sbjct: 748 CFGFLSAKEIPKIPPFPVFLRQGNMKVRLIVAPKKTTVTAAQLQEIQLFHNYLFTQVLQM 807
Query: 238 KKYLML-FD--PNCSENSYFIVPTVS--DSEQIVIDWKFMTLISEHHNDVIQDIPEKE-R 291
K L FD N N+ IVP D I+ K+++ + + ++ + IP+ E R
Sbjct: 808 CKTGNLEFDGTSNAPLNT-LIVPLNKRKDDMSYTINMKYVSEVVANMENMPR-IPKDEVR 865
Query: 292 ENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLK 351
+ F+ ++DA+VMPWYRN +P ++YVAEI+ P S FP T+ ++TF EY+ K
Sbjct: 866 RQYKFNAEDYKDAIVMPWYRNLEQPVFYYVAEILPEWRPSSKFPD-TH-FETFNEYFIKK 923
Query: 352 YGLQIQNLEQPLLDVDHTSCRLNFLTPRYVN--RKG--------INLAXXXXXXXXXXXX 401
Y L+I + Q LLDVD TS RLN L PR N R+ N+
Sbjct: 924 YKLEIYDQNQSLLDVDFTSTRLNLLQPRIQNQPRRSRTVSNSSTSNIPQASASDSKESNT 983
Query: 402 XL---GKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIR-TAVASEIGLG 457
+ ++Q+LVPEL IHP A+LW +LPSI YR+N LLL DE+R T + G
Sbjct: 984 SVPHSSQRQILVPELMDIHPISATLWNVIAALPSIFYRVNQLLLTDELRETILVKAFGKE 1043
Query: 458 KVILDEKVEW 467
K LD+ VEW
Sbjct: 1044 KTKLDDNVEW 1053
Score = 315 (115.9 bits), Expect = 4.8e-166, Sum P(4) = 4.8e-166
Identities = 85/199 (42%), Positives = 112/199 (56%)
Query: 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGES 837
G S +R ETIGDSFLK+A T +LY T + HEGKLS RSK+VSN NL++LGK+ +
Sbjct: 1409 GMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLGIPQL 1468
Query: 838 MIATKFEPRDNWLPPGYFVP----KYLETALIEAGFPASLWNCLSLPNLKELSPEKV-LE 892
++A KF+ D+WLPP Y +P K T E + L ++E K +
Sbjct: 1469 IVANKFDAHDSWLPPCY-IPTCDFKAPNTDDAEEK-DNEIERILDGQVIEEKPENKTGWD 1526
Query: 893 I---IKQKCVDLDCTVDMNVQ--------SVVPYNLVTQHSIPDKSIADCVEALIGAYLI 941
I + + D T+ Q S +PYNL+TQ I DKSIAD VEALIG +L+
Sbjct: 1527 IGGDVSKSTTDGIETITFPKQARVGNDDISPLPYNLLTQQHISDKSIADAVEALIGVHLL 1586
Query: 942 ECGPRGALLFMSWLGLKVI 960
GP L M+W+GLKVI
Sbjct: 1587 TLGPNPTLKVMNWMGLKVI 1605
Score = 72 (30.4 bits), Expect = 6.0e-68, Sum P(3) = 6.0e-68
Identities = 21/59 (35%), Positives = 30/59 (50%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GD+ L Y IT +L+ G L+ LRS V+N L + F + IA
Sbjct: 1679 QRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFIA 1737
Score = 64 (27.6 bits), Expect = 1.1e-66, Sum P(3) = 1.1e-66
Identities = 17/52 (32%), Positives = 25/52 (48%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLG 1066
+R E +GD+ L + T +LY G L+ RS V+N L +LG
Sbjct: 1413 ERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNLYRLGKKLG 1464
Score = 49 (22.3 bits), Expect = 7.2e-97, Sum P(3) = 7.2e-97
Identities = 14/49 (28%), Positives = 25/49 (51%)
Query: 81 ELKELDNDLMPVTKEFINLYENTEPVV-PK----TPEIETYPDSTKRRQ 124
+ K+L NDL+ KE + E +E + P+ T +E Y D + ++
Sbjct: 1253 QFKKLQNDLLKQAKERLEALEMSEDMEKPRRLEDTVNLEDYGDDQENQE 1301
Score = 47 (21.6 bits), Expect = 3.1e-138, Sum P(3) = 3.1e-138
Identities = 17/59 (28%), Positives = 22/59 (37%)
Query: 524 DKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYP 582
D K D E++NE E LD +E G W G S G+E +P
Sbjct: 1490 DFKAPNTDDAEEKDNEIERILDGQVIEEKPENKTG---WDIGGDVSKSTTDGIETITFP 1545
Score = 46 (21.3 bits), Expect = 1.7e-68, Sum P(2) = 1.7e-68
Identities = 21/92 (22%), Positives = 38/92 (41%)
Query: 847 DNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPN--LKELSPEKVLEIIKQKCVDLDCT 904
D+ + P Y V K T + C LP+ L P + I++ V C
Sbjct: 551 DSQMEP-YVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCA 609
Query: 905 -VDMNVQSVVPYNLVTQHSIPDKSIADCVEAL 935
+ + + S + + +V ++ +P+K A AL
Sbjct: 610 ELLLPINSPIKHAIVLKNPMPNKKTAQMAVAL 641
Score = 43 (20.2 bits), Expect = 4.8e-166, Sum P(4) = 4.8e-166
Identities = 11/43 (25%), Positives = 24/43 (55%)
Query: 500 VNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEE 542
+ KE A+ E+ ++ K ++ + D G++QEN+++E
Sbjct: 1262 LKQAKERLEAL-EMSEDMEKPRRLEDTVNLEDYGDDQENQEDE 1303
Score = 42 (19.8 bits), Expect = 3.9e-96, Sum P(3) = 3.9e-96
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 713 PSKNTAILTEILENINKLNTYGSVEKDVKTEPK-SPGKSCEH 753
P+K TA + LE +L+ G ++ ++ + + S K EH
Sbjct: 630 PNKKTAQMAVALEACRQLHLEGELDDNLLPKGRESIAKLLEH 671
Score = 38 (18.4 bits), Expect = 1.6e-165, Sum P(4) = 1.6e-165
Identities = 12/53 (22%), Positives = 24/53 (45%)
Query: 665 EFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNT 717
+F K+ D L + +LE ++ D+E + V++ D + +NT
Sbjct: 1253 QFKKLQNDLLKQAKERLEALEMSEDMEKPRRLEDTVNLEDYGDDQENQEDENT 1305
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 986 (352.1 bits), Expect = 2.2e-132, Sum P(3) = 2.2e-132
Identities = 212/485 (43%), Positives = 289/485 (59%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++ AI +NRYCARLPSD FT LAP E+ + F ++ LPINSPL+ S+ G
Sbjct: 627 INTAIGHINRYCARLPSDPFTHLAPKCRTRELPDGT---FYSTLYLPINSPLRASIVGPP 683
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDST 120
M LA R+ A+ C L+++ ELD+ LMPV KE + E + + + P ST
Sbjct: 684 MSCIRLAERVVALICCEKLHKIGELDDHLMPVGKETVKYEEELDLHDEEETSVPGRPGST 743
Query: 121 KRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLA 180
KRRQ Y K + C + P + PCYLY + M LT P+PDE N R RK++PPE++ +
Sbjct: 744 KRRQCYPKAIPECLRDSYPKPDQPCYLYVIGMVLTTPLPDELNFRRRKLYPPEDTTRCFG 803
Query: 181 ILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKY 240
ILT K IP++ FP++TR GEV +SIEL LS + L Y+F+ +L+L+K
Sbjct: 804 ILTAKPIPQIPHFPVYTRSGEVTISIELKKSGFTLSLQMLELITRLHQYIFSHILRLEKP 863
Query: 241 LMLFDPNCSENSYFIVP--TVSDSEQIVIDWKFMTLISEHHNDV-IQDIPEKERENFVFD 297
+ F P ++++Y ++P V+DS + ID+KFM I + + I + FVF
Sbjct: 864 ALEFKPTDADSAYCVLPLNVVNDSSTLDIDFKFMEDIEKSEARIGIPSTKYSKETPFVFK 923
Query: 298 ESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQ 357
++DAV++P YRN +P FYVA++ T++ P S FPS Y+TF EYY KY L +
Sbjct: 924 LEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPE--YETFAEYYKTKYNLDLT 981
Query: 358 NLEQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIH 417
NL QPLLDVDHTS RLN LTPR++N+KG L L KQ+LVPELC IH
Sbjct: 982 NLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQILVPELCAIH 1041
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWPPFNFGWKMK 477
P PASLWRK+V LPSILYRL+ LL A+E+R AS+ G+G L +P +FGWK K
Sbjct: 1042 PIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASDAGVGVRSLPVDFRYPNLDFGWK-K 1100
Query: 478 KLKEK 482
+ K
Sbjct: 1101 SIDSK 1105
Score = 266 (98.7 bits), Expect = 2.2e-132, Sum P(3) = 2.2e-132
Identities = 71/192 (36%), Positives = 105/192 (54%)
Query: 676 FYEGQ-LELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLNT 732
F +G L K I V+ T + P+ + +++N PS +L+ + L+ N NK +
Sbjct: 1196 FCQGNHLSYYKQEIPVQPTT--SYPIQNL-YNYENQPQPSDECTLLSNKYLDGNANKSTS 1252
Query: 733 YGSVEKDVKTEP-------KSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHT-GPSPKRL 784
G TE + +S G T P+ L N + G + +RL
Sbjct: 1253 EGRPTMPGTTEAGKALSERMASAQSPAPGYSPRTLGPNPGLILQALTLSNASDGFNLERL 1312
Query: 785 ETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFE 844
E +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ + F+
Sbjct: 1313 EMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFD 1372
Query: 845 PRDNWLPPGYFV 856
P NWLPPGY V
Sbjct: 1373 PPVNWLPPGYVV 1384
Score = 105 (42.0 bits), Expect = 2.2e-132, Sum P(3) = 2.2e-132
Identities = 22/38 (57%), Positives = 27/38 (71%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAY 939
+C VD QS+ Y+L T+ I DKSIADCVEAL+G Y
Sbjct: 1529 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCY 1565
Score = 74 (31.1 bits), Expect = 2.1e-103, Sum P(2) = 2.1e-103
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 996 LLQAMTHASYFLNTLTDCY--QRLEFLGDAILDYLITRHL---YEDERAHSPGTLTDLRS 1050
+LQA+T L+ +D + +RLE LGD+ L + IT +L Y D AH G L+ +RS
Sbjct: 1294 ILQALT-----LSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPD--AHE-GRLSYMRS 1345
Query: 1051 ALVNNIIFASLAVRLG 1066
V+N L + G
Sbjct: 1346 KKVSNCNLYRLGKKKG 1361
Score = 41 (19.5 bits), Expect = 1.3e-22, Sum P(3) = 1.3e-22
Identities = 9/21 (42%), Positives = 13/21 (61%)
Query: 532 SGNEQENEDEEKLDKIKSDEN 552
S +E + EDEE +K K + N
Sbjct: 413 SDSEDDEEDEEIEEKEKPETN 433
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 856 (306.4 bits), Expect = 1.0e-110, Sum P(2) = 1.0e-110
Identities = 173/289 (59%), Positives = 216/289 (74%)
Query: 946 RGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTH 1002
R ++L S G IPP +P++ + L+ GF+ FE+ INYRFK+K+YLLQA TH
Sbjct: 528 RSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTH 587
Query: 1003 ASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
ASY NT+TDCYQRLEFLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLA
Sbjct: 588 ASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLA 647
Query: 1063 VRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALG 1120
V+ +H +FK +SP L VI FV+ Q E + + L E DE EDIEVPKA+G
Sbjct: 648 VKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMG 707
Query: 1121 DLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSK 1180
D+FES+AGAIY+DSGMSL+TVW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS
Sbjct: 708 DIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSP 767
Query: 1181 PEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
E+ DG+ VRVTVEV GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 768 AERTYDGK-VRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 815
Score = 260 (96.6 bits), Expect = 1.0e-110, Sum P(2) = 1.0e-110
Identities = 75/196 (38%), Positives = 107/196 (54%)
Query: 676 FYEG-QLELIKNRIDVENTIKEN-QPVHIVRQSFDNASNPSKNTAILT-EILE-NINKLN 731
F +G QL K I V+ T + Q ++ S++N PS +L+ + L+ N NK
Sbjct: 94 FCQGNQLNYYKQEIPVQPTTSYSIQNLY----SYENQPQPSDECTLLSNKYLDGNANKST 149
Query: 732 TYGSVEKDVK-----TEPKSPGK-----SCEHGIIRNTSTPSDFSFDFQPDLENHT-GPS 780
+ GS V T G+ S G T P+ L N + G +
Sbjct: 150 SDGSPVMAVMPGTTDTIQVLKGRMDSEQSPSIGYSSRTLGPNPGLILQALTLSNASDGFN 209
Query: 781 PKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIA 840
+RLE +GDSFLK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+
Sbjct: 210 LERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVV 269
Query: 841 TKFEPRDNWLPPGYFV 856
+ F+P NWLPPGY V
Sbjct: 270 SIFDPPVNWLPPGYVV 285
Score = 171 (65.3 bits), Expect = 9.8e-31, Sum P(2) = 9.8e-31
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 432 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 490
Query: 962 PVTNPESKHLSDVLLDGFDKFEESIN 987
+ + + + F+ +++++
Sbjct: 491 VIKRTDREKALCPTRENFNSQQKNLS 516
Score = 37 (18.1 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 335 DYEDDFLEYDQE 346
Score = 37 (18.1 bits), Expect = 1.5e-89, Sum P(3) = 1.5e-89
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 531 DSGNEQENEDEEKL 544
D E+E+E+EE L
Sbjct: 312 DEDYEEEDEEEESL 325
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 838 (300.0 bits), Expect = 2.4e-83, P = 2.4e-83
Identities = 175/333 (52%), Positives = 230/333 (69%)
Query: 903 CTVDMNVQSVVPYNLVTQHSIP-DKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
C++ + V V+ + S P ++ + ++ G+ PR + G IP
Sbjct: 65 CSLGLKVLPVIKRTSRDKASYPAQENSSSQQKSPSGSCAAAVSPRSSAGKDLEYGCLKIP 124
Query: 962 P---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLE 1018
P +P+++ + L+ GF+ FE+ INY FK+K+YLLQA THASY NT+TDCYQRLE
Sbjct: 125 PRCMFDHPDAEKTLNHLISGFENFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLE 184
Query: 1019 FLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGL 1078
FLGDAILDYLIT+HLYED R HSPG LTDLRSALVNN IFASLAV+ +H +FK +SP L
Sbjct: 185 FLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPEL 244
Query: 1079 HEVIQRFVKMQAENDFTLNQEYYLMEGECDEA--EDIEVPKALGDLFESVAGAIYLDSGM 1136
VI FV+ Q E + + L E DE EDIEVPKA+GD+FES+AGAIY+DSGM
Sbjct: 245 FHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGM 304
Query: 1137 SLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEV 1196
SL+ VW+VYY +M+ IE+ S +VP+SP+RELLE+EPE A+FS E+ DG+ VRVTVE+
Sbjct: 305 SLEVVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGK-VRVTVEL 363
Query: 1197 FGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKP 1229
GKG +KG+GR+Y IAK AA+ AL+ LK+ +P
Sbjct: 364 VGKGKFKGVGRSYRIAKSAAARRALRSLKANQP 396
Score = 170 (64.9 bits), Expect = 3.5e-09, P = 3.5e-09
Identities = 35/62 (56%), Positives = 43/62 (69%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 15 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 73
Query: 962 PV 963
+
Sbjct: 74 VI 75
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 347 (127.2 bits), Expect = 7.1e-76, Sum P(5) = 7.1e-76
Identities = 126/503 (25%), Positives = 218/503 (43%)
Query: 2 DNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIM-------FTCSIRLPINSPLKR 54
+NA+ I++RYC +P+D F + P + + E D I SI +P+N L+
Sbjct: 569 NNALAILHRYCQTIPTDAFGFVIPWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRD 628
Query: 55 SVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVT-KEFINL-----YENTEPVVP 108
++ M A AA +AC+VLY L EL+ +P T KE + +E+
Sbjct: 629 TIYSDPMDNVKTAKISAAFKACKVLYSLGELNERFVPKTLKERVASIADVHFEHWNKYGD 688
Query: 109 KTPEIETYPDSTKRRQFYHKRMASCFTNCRPSVNTPCYLYAVKMKLTCPIPD-EQNKRGR 167
D +K R Y F + P V CY Y + ++ P E +
Sbjct: 689 SVTATVNKADKSKDRT-YKTECPLEFYDALPRVGEICYAYEIFLE-----PQFESCEYTE 742
Query: 168 KIHPPENSPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIF 226
++ +P+ AIL +P++ P+F+ G++ V + V++ + E L F
Sbjct: 743 HMYLNLQTPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQF 802
Query: 227 MDYLFTKVLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVIQD 285
+F +LK+ + D ENSY +VP + + EQ DW+ MT +
Sbjct: 803 HGMVFRDILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSN 862
Query: 286 IPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFE 345
+ ++E++ E F +V WY N +P V ++ + P S + + +T+
Sbjct: 863 VQQREQQPAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYY 918
Query: 346 EYYSLKYGLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXX 402
E+ KYG +I ++ ++ +++V + +L F YV+ +G A
Sbjct: 919 EFTMSKYGNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRGKFNAKSKAKM------- 967
Query: 403 LGKKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILD 462
K +L+PELC FP LW K + LPSIL R+ LL A+ +R + + L + +
Sbjct: 968 ---KVILIPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNLHLLPFN 1024
Query: 463 EKVEWP-PFNFGWKMKKLKEKYG 484
P P + +K+ + G
Sbjct: 1025 GTDYMPRPLEIDYSLKRNVDPLG 1047
Score = 303 (111.7 bits), Expect = 7.1e-76, Sum P(5) = 7.1e-76
Identities = 76/203 (37%), Positives = 114/203 (56%)
Query: 922 SIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGL---KVIPPVT---NPE--SK---- 969
+IP+K IAD +EAL+G + G + A + + + + P+T N E K
Sbjct: 1360 TIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDKPLTQLLNLELGGKKMRA 1419
Query: 970 HLSDVLLDGF--DKF--EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAIL 1025
+++ +DGF + + E+++ Y FKD+ YLLQA+TH SY N +T YQ LEF+GDAIL
Sbjct: 1420 NVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALTHPSYPTNRITGSYQELEFIGDAIL 1479
Query: 1026 DYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRF 1085
D+LI+ +++E+ +PG LTDLRSALVNN A + VR H F + L E+I +F
Sbjct: 1480 DFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAENAKLSEIISKF 1539
Query: 1086 VKMQAENDFTLNQEYYLMEGECD 1108
V Q + ++ E D
Sbjct: 1540 VNFQESQGHRVTNYVRILLEEAD 1562
Score = 246 (91.7 bits), Expect = 4.6e-65, Sum P(5) = 4.6e-65
Identities = 86/356 (24%), Positives = 156/356 (43%)
Query: 175 SPQGLAILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVL-SEENLSNTLIFMDYLFTK 233
+P+ AIL +P++ P+F+ G++ V + V++ + E L F +F
Sbjct: 750 TPRNYAILLRNKLPRLAEMPLFSNQGKLHVRVANAPLEVIIQNSEQLELLHQFHGMVFRD 809
Query: 234 VLKLKKYLMLFDPNCSENSYFIVPTVSDS-EQIVIDWKFMTLISEHHNDVIQDIPEKERE 292
+LK+ + D ENSY +VP + + EQ DW+ MT ++ ++E++
Sbjct: 810 ILKIWHPFFVLDRRSKENSYLVVPLILGAGEQKCFDWELMTNFRRLPQSHGSNVQQREQQ 869
Query: 293 NFVFDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKY 352
E F +V WY N +P V ++ + P S + + +T+ E+ KY
Sbjct: 870 PAPRPED-FEGKIVTQWYANYDKP--MLVTKVHRELTPLS-YMEKNQQDKTYYEFTMSKY 925
Query: 353 GLQIQNL---EQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLL 409
G +I ++ ++ +++V + +L F YV+ +G A K +L
Sbjct: 926 GNRIGDVVHKDKFMIEVRDLTEQLTF----YVHNRGKFNAKSKAKM----------KVIL 971
Query: 410 VPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEIGLGKVILDEKVEWP- 468
+PELC FP LW K + LPSIL R+ LL A+ +R + + L + + P
Sbjct: 972 IPELCFNFNFPGDLWLKLIFLPSILNRMYFLLHAEALRKRFNTYLNLHLLPFNGTDYMPR 1031
Query: 469 PFNFGWKMKKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVD 524
P + +K+ + G N + +D E + + I +A +EI +
Sbjct: 1032 PLEIDYSLKRNVDPLG------NVIPTEDIEEPKSLLEPMPTKSIEASVANLEITE 1081
Score = 167 (63.8 bits), Expect = 7.1e-76, Sum P(5) = 7.1e-76
Identities = 58/189 (30%), Positives = 92/189 (48%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GDSFLK + T++L Y + +EG L+ ++SK VSN NL +++
Sbjct: 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLLFCLIDADIPKTLNTI 1269
Query: 842 KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
+F PR WLPPG +P + AL P + NL++L+ ++K C D+
Sbjct: 1270 QFTPRYTWLPPGISLPHNV-LALWREN-P-EFAKIIGPHNLRDLALGDEESLVKGNCSDI 1326
Query: 902 D-------CTVD-------MNVQSVVPY--NLVTQHSIPDKSIADCVEALIGAYLIECGP 945
+ C + + S V + LVT IP+K IAD +EAL+G + G
Sbjct: 1327 NYNRFVEGCRANGQSFYAGADFSSEVNFCVGLVT---IPNKVIADTLEALLGVIVKNYGL 1383
Query: 946 RGALLFMSW 954
+ A + +
Sbjct: 1384 QHAFKMLEY 1392
Score = 164 (62.8 bits), Expect = 7.1e-76, Sum P(5) = 7.1e-76
Identities = 42/124 (33%), Positives = 71/124 (57%)
Query: 1104 EGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKS 1163
+GE + + +++VPKALGD+ E++ A+YLD L W+V + + + E++ + VP +
Sbjct: 1597 KGEFNMSTNVDVPKALGDVLEALIAAVYLDC-RDLQRTWEVIFNLFEPELQEFTRKVPIN 1655
Query: 1164 PIRELLELEPENARFSKPEKLADGRRVRVTVE-VFGKGSYK--GIGRNYCIAKCTAAKCA 1220
IR+L+E + FS P + +G V V+ + + + K G G N AK +AAK A
Sbjct: 1656 HIRQLVEHKHAKPVFSSP--IVEGETVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAAKHA 1713
Query: 1221 LKHL 1224
L+ L
Sbjct: 1714 LQQL 1717
Score = 92 (37.4 bits), Expect = 1.5e-29, Sum P(3) = 1.5e-29
Identities = 46/176 (26%), Positives = 78/176 (44%)
Query: 777 TGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK---- 832
TG S + LE IGD+ L + I+ +++ ++ G L+ LRS V+N L + +
Sbjct: 1465 TG-SYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHF 1523
Query: 833 -VFGE----SMIATKFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSP 887
+ E S I +KF G+ V Y+ L EA + + ++ EL P
Sbjct: 1524 FILAENAKLSEIISKFVNFQE--SQGHRVTNYVRILLEEADVQPTPLDLDDELDMTEL-P 1580
Query: 888 EKVLEIIKQKCVDLDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIEC 943
KC+ + + V +N+ T +P K++ D +EALI A ++C
Sbjct: 1581 HA------NKCISQEA--EKGVPPKGEFNMSTNVDVP-KALGDVLEALIAAVYLDC 1627
Score = 74 (31.1 bits), Expect = 1.1e-39, Sum P(4) = 1.1e-39
Identities = 17/41 (41%), Positives = 25/41 (60%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
+RLE LGD+ L T +L + GTLT+++S LV+N
Sbjct: 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSN 1250
Score = 52 (23.4 bits), Expect = 3.6e-28, Sum P(4) = 3.6e-28
Identities = 15/61 (24%), Positives = 31/61 (50%)
Query: 1113 IEVP-KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLEL 1171
+ +P K + D E++ G I + G+ Y++I +++I++ P+ +LL L
Sbjct: 1359 VTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKICRADIDK--------PLTQLLNL 1410
Query: 1172 E 1172
E
Sbjct: 1411 E 1411
Score = 42 (19.8 bits), Expect = 2.2e-24, Sum P(3) = 2.2e-24
Identities = 23/102 (22%), Positives = 46/102 (45%)
Query: 1051 ALVNNIIFA--SLAVRLGFHHFFK-HLSPGLHEVIQRFVKMQAENDFTLNQEYYLMEGEC 1107
+++N + F + A+R F+ + HL P + ++ E D++L + + G
Sbjct: 994 SILNRMYFLLHAEALRKRFNTYLNLHLLP-FNGT--DYMPRPLEIDYSLKRNVDPL-GNV 1049
Query: 1108 DEAEDIEVPKALGDLF--ESVAGAIYLDSGMSLDTVWKVYYE 1147
EDIE PK+L + +S+ ++ + W+ Y E
Sbjct: 1050 IPTEDIEEPKSLLEPMPTKSIEASVANLEITEFENPWQKYME 1091
Score = 41 (19.5 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 10/26 (38%), Positives = 15/26 (57%)
Query: 1112 DIEVPKALGDLFESVAGAIYLDSGMS 1137
D+E + LGD F ++ +YL S S
Sbjct: 1208 DMERLEILGDSFLKLSATLYLASKYS 1233
Score = 39 (18.8 bits), Expect = 7.1e-76, Sum P(5) = 7.1e-76
Identities = 7/14 (50%), Positives = 12/14 (85%)
Query: 26 IITISEIKEDDSIM 39
IIT+S+ KE +++M
Sbjct: 199 IITVSDTKEMENVM 212
Score = 37 (18.1 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 9/24 (37%), Positives = 12/24 (50%)
Query: 1003 ASYFLNTLTDCYQRLEFLGDAILD 1026
A FL+ +T Y L L I+D
Sbjct: 116 AQVFLDMVTQTYVALSSLSVVIID 139
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 513 (185.6 bits), Expect = 2.1e-64, Sum P(3) = 2.1e-64
Identities = 154/460 (33%), Positives = 234/460 (50%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+R E +GD++LK+ ++ FL+ YP HEG+L+ +R + VSN L++ K + A
Sbjct: 1353 ERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQAD 1412
Query: 842 KFEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCLSLPNLKELSPEKVLEIIKQKCVDL 901
+F P W PG +P + E + + S+++ E S E+ K+ D
Sbjct: 1413 RFAP-SRWAAPGV-LPVFDEES---REYEPSIFD--------EESTG--CELQKES-YD- 1455
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV-I 960
D +M + + + K++AD VEALIG Y + G A M W+G+ +
Sbjct: 1456 DYADNMQEDGEIEGDSSCYRVLSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAEL 1515
Query: 961 PP--VTNPESKHLSDVLLDG--FDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQR 1016
P + P+ + + ++ FD + + F++K L++A+THAS + ++ CYQR
Sbjct: 1516 DPEEIPPPKPYDIPESIMRSINFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVS-CYQR 1574
Query: 1017 LEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
LEF+GDA+LD+LITRHL+ PG LTDLR+A VNN FA +AV+ H +H S
Sbjct: 1575 LEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSS 1634
Query: 1077 GLHEVIQRFVKMQAENDFTLNQEYYLMEG-ECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
L I+ FVK D QE L G D + PK LGD+ ES+AGAI+LDSG
Sbjct: 1635 ALETQIREFVK-----DV---QEELLKPGFNSFGLGDCKAPKVLGDIVESIAGAIFLDSG 1686
Query: 1136 MSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVE 1195
VWKV+ ++ + ++P P+REL E + A K + + TVE
Sbjct: 1687 YDTSVVWKVFQPLLHPMVT--PETLPMHPVRELQERCQQQAE-GLEYKASRAGNI-ATVE 1742
Query: 1196 VFGKGSYKGIGRN--YCIAKCTAAKCALKHLKSAKPADVK 1233
VF G G+ +N +A+ AA+ AL LK + A K
Sbjct: 1743 VFVDGVQIGVAQNPQKKMAQKLAARNALVVLKEKETATKK 1782
Score = 159 (61.0 bits), Expect = 2.1e-64, Sum P(3) = 2.1e-64
Identities = 44/149 (29%), Positives = 72/149 (48%)
Query: 319 FYVAEIMTNVHPRSMFPSRTN-----TYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRL 373
FYV I N++ + FP + Y ++ +YY KYG+++ +QPL+ S
Sbjct: 1199 FYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPLIRARGVSYCK 1258
Query: 374 NFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQL--LVPELCLIHPFPASLWRKSVSLP 431
N L+PR+ + L K L PELCL+HP P SL R + LP
Sbjct: 1259 NLLSPRFEH---------SDAREGDFSENLDKTYYVYLPPELCLVHPLPGSLVRGAQRLP 1309
Query: 432 SILYRLNALLLADEIRTAVASEIGLGKVI 460
SI+ R+ ++LLA +++ + + K++
Sbjct: 1310 SIMRRVESMLLAVQLKDIIDYPVPATKIL 1338
Score = 135 (52.6 bits), Expect = 2.1e-64, Sum P(3) = 2.1e-64
Identities = 35/132 (26%), Positives = 71/132 (53%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEI-KEDDSIMFTCSIRLPINSPLKRSVTGH 59
+++A+ +++ YC++LPSD ++ L P + + K S+ ++C ++LP N+P ++ + G
Sbjct: 814 LNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYSCKLQLPCNAPFEK-LEGP 872
Query: 60 KMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDS 119
+ LA + + AC+ L+E+ + L+P E TE + E E P +
Sbjct: 873 ICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPDRGSGEG--EKTE----QNDEGEPLPGT 926
Query: 120 TKRRQFYHKRMA 131
+ R+FY + +A
Sbjct: 927 ARHREFYPEGVA 938
Score = 102 (41.0 bits), Expect = 2.4e-20, Sum P(3) = 2.4e-20
Identities = 25/68 (36%), Positives = 40/68 (58%)
Query: 996 LLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
+L+A+T AS TL CY+R E LGDA L ++++R L+ G LT +R +V+N
Sbjct: 1337 ILEALTAASC-QETL--CYERAELLGDAYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1393
Query: 1056 IIFASLAV 1063
++ A+
Sbjct: 1394 MVLYQYAL 1401
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 453 (164.5 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 107/258 (41%), Positives = 157/258 (60%)
Query: 917 LVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTN--PESKHLSDV 974
+ ++ ++ KS+AD VE+LIGAYL E G AL+FM+W+G+KV T +S ++
Sbjct: 1086 VASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTTKIQRDSPIQAEK 1145
Query: 975 LLD-GFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHL 1033
L++ G+ E +NY F+DKS L++A+TH SY + + CYQRLEFLGD++LDYLIT+HL
Sbjct: 1146 LVNVGY--MESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDSVLDYLITKHL 1203
Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEND 1093
Y+ SPG LTD+RSA VNN +A +AV+ H + S LH+ I R V ++
Sbjct: 1204 YDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHISRTV-----SE 1258
Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEI 1153
F E ++ DI PK LGD+ ES+AGAI++DSG + + V+ ++ I
Sbjct: 1259 F----EQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCMI 1314
Query: 1154 ERLSVSVPKSPIRELLEL 1171
+V + P+REL EL
Sbjct: 1315 TPETVKL--HPVRELTEL 1330
Score = 121 (47.7 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 45/116 (38%), Positives = 61/116 (52%)
Query: 784 LETIGDSFLKYAIT--IFLYC-TYPNVHEGKLSHLRSKQVSNYNLFKLG-KQKVFGESMI 839
LET+GDSFLKYA+ +F +C T+ HEG LS + +SN L + G +QK+ G I
Sbjct: 997 LETLGDSFLKYAVCQQLFQHCHTH---HEGLLSTKKDGMISNVMLCQFGCQQKLQG--FI 1051
Query: 840 ATK-FEPRDNWLPPGYFVPKYLETALIEAGFPASLWNCL--SLPNLKELSPEKVLE 892
+ FEP+ W+ PG Y +L+ P S N S NLK S V+E
Sbjct: 1052 RDECFEPK-GWMVPGQSSAAY---SLVNDTLPESR-NIYVASRRNLKRKSVADVVE 1102
Score = 115 (45.5 bits), Expect = 2.1e-52, Sum P(3) = 2.1e-52
Identities = 81/393 (20%), Positives = 165/393 (41%)
Query: 73 MEACRVLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMAS 132
++AC L+++ L + L+P + + E V K +I+ Y +T++ ++ + S
Sbjct: 619 LKACIQLHKVGALSDHLVP---DMVV----AETVSQKLEKIQ-Y--NTEQPCYFPPELVS 668
Query: 133 CFTNCRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSPQGLAILTTKYIPKVCS 192
F+ +P T + Y ++MK P R H + G ++ I S
Sbjct: 669 QFS-AQPE--TTYHFYLIRMKPNSP---------RNFHL-NDVLLGTRVVLEDDIGNT-S 714
Query: 193 FPIFTRCGEVEVSIELIDKNVVLSEENL-----SNTL--IFMDYLFTKVLKLKKYLMLFD 245
F + G + V++ + + EE L TL + +D+ +++ L L D
Sbjct: 715 FRLEDHRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRD 774
Query: 246 PNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHNDVIQDIPEKERENFVFDESKFRDAV 305
+ Y +VP+ E +IDW+ + ++ ++V++ E N +D +
Sbjct: 775 GVALD--YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEK-HENCSTNGASRILHTKDGL 831
Query: 306 VMPWY-RNQFEPT----YFYVAE-IMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNL 359
+N T Y Y + ++ N++ S+ R + QT+ EYY ++G+Q+ +
Sbjct: 832 FCTCVVQNALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFV 891
Query: 360 EQPLLDVDHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELC--LIH 417
++PLL+ H F Y +++A L PELC ++
Sbjct: 892 DEPLLNGRHI-----FTLHSY-----LHMAKKKKEKEHDREFVE-----LPPELCHVILS 936
Query: 418 PFPASLWRKSVSLPSILYRLNALLLADEIRTAV 450
P + +PS++ R+ +LL+A ++ ++
Sbjct: 937 PISVDMIYSYTFIPSVMQRIESLLIAYNLKKSI 969
Score = 93 (37.8 bits), Expect = 4.1e-50, Sum P(3) = 4.1e-50
Identities = 36/141 (25%), Positives = 69/141 (48%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
+ +++ ++ YC+RLPSD + + AP ++ K+ S C++ LP + P+K +
Sbjct: 556 LSSSVSLIYHYCSRLPSDEYFKPAPRFDVN--KDQGS----CTLYLPKSCPVKEVKA--E 607
Query: 61 MPTKLLAWRIAAMEACRVLYELKELDNDLMP-------VTKEFINLYENTEPVVPKTPEI 113
K+L + ++AC L+++ L + L+P V+++ + NTE PE+
Sbjct: 608 ANNKVLKQAVC-LKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQPCYFPPEL 666
Query: 114 ----ETYPDSTKRRQFYHKRM 130
P++T FY RM
Sbjct: 667 VSQFSAQPETTYH--FYLIRM 685
Score = 90 (36.7 bits), Expect = 3.1e-06, Sum P(2) = 3.1e-06
Identities = 20/41 (48%), Positives = 26/41 (63%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
+RLE +GDS L Y IT LY YP + G L+ +RS V+N
Sbjct: 1185 QRLEFLGDSVLDYLITKHLYDKYPCLSPGLLTDMRSASVNN 1225
Score = 78 (32.5 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 30/127 (23%), Positives = 54/127 (42%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH- 1073
+ LE LGD+ L Y + + L++ H G L+ + +++N++ + F +
Sbjct: 995 ESLETLGDSFLKYAVCQQLFQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDE 1054
Query: 1074 -LSP-GLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIY 1131
P G Q ND TL + + +++ K++ D+ ES+ GA Y
Sbjct: 1055 CFEPKGWMVPGQSSAAYSLVND-TLPESRNIYVAS---RRNLK-RKSVADVVESLIGA-Y 1108
Query: 1132 LDSGMSL 1138
L G L
Sbjct: 1109 LSEGGEL 1115
Score = 41 (19.5 bits), Expect = 1.1e-44, Sum P(3) = 1.1e-44
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 116 YPDSTKRRQFYHKRMASCFTN 136
+P + R+FYHK + S +N
Sbjct: 161 HPYACIMREFYHKELNSGTSN 181
Score = 38 (18.4 bits), Expect = 2.2e-44, Sum P(3) = 2.2e-44
Identities = 10/27 (37%), Positives = 15/27 (55%)
Query: 435 YRLNALLLADEIRTAVASEIGLGKVIL 461
Y++ AL A + T V E G GK ++
Sbjct: 27 YQVEALEKAIKQNTIVFLETGSGKTLI 53
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 404 (147.3 bits), Expect = 3.3e-44, Sum P(4) = 3.3e-44
Identities = 121/320 (37%), Positives = 163/320 (50%)
Query: 919 TQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVTNP------ESKHLS 972
+ H + K IAD VE+LIGA+L+E G + A F+ W+G+ V NP +S ++
Sbjct: 1148 SHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDV--DFNNPALYRVLDSSSIN 1205
Query: 973 DVLLDGFD--KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLIT 1030
L+D D EE I Y+FK K LLQA H S+ ++ CYQRLEFLGDA+L+Y+IT
Sbjct: 1206 LSLMDYTDIAGLEELIGYKFKHKGLLLQAFVHPSFSQHS-GGCYQRLEFLGDAVLEYVIT 1264
Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFH-HFFKHLSPGLHEVIQRFVKMQ 1089
+LY PG +TDLRS V N A AV H H K S L I +F +M
Sbjct: 1265 SYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKSIHKHLIKD-SNHLTSAISKF-EMY 1322
Query: 1090 AENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIM 1149
+ L E D E+ PKALGD+ ES GA+ LDSG +L+ VWKV ++
Sbjct: 1323 VK----------LSNSEKDLLEEPACPKALGDIVESCIGAVLLDSGFNLNYVWKVMLMLL 1372
Query: 1150 KSEIERLSVSV-PKSPIRELLELEPENARFSKPEKLADGR-RVRVTVEVFGKGSY-KGIG 1206
K + ++ P +REL + KP K ADG V+V V + K
Sbjct: 1373 KPVLTFANMHTNPMRELRELCQCHGFELGLPKPMK-ADGEYHVKVEVNIKSKIIICTAAN 1431
Query: 1207 RNYCIAKCTAAKCALKHLKS 1226
RN A+ AA+ L LK+
Sbjct: 1432 RNSKAARKFAAQETLSKLKN 1451
Score = 129 (50.5 bits), Expect = 2.4e-08, Sum P(3) = 2.4e-08
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 771 PDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
P H+G +RLE +GD+ L+Y IT +LY TYP++ G+++ LRS V N +L
Sbjct: 1238 PSFSQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAV 1297
Query: 831 QKVFGESMI 839
+K + +I
Sbjct: 1298 EKSIHKHLI 1306
Score = 112 (44.5 bits), Expect = 3.3e-44, Sum P(4) = 3.3e-44
Identities = 25/72 (34%), Positives = 41/72 (56%)
Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
S +R E +GD+FLKY + + TY + EG+L+ RS V+N +L++L +K +
Sbjct: 1041 SLERFEVLGDAFLKYVVGRHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIRKKLQVYIR 1100
Query: 840 ATKFEPRDNWLP 851
+FEP + P
Sbjct: 1101 DQQFEPTQFFAP 1112
Score = 92 (37.4 bits), Expect = 0.00014, Sum P(3) = 0.00014
Identities = 30/94 (31%), Positives = 45/94 (47%)
Query: 971 LSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLIT 1030
L DV+L F + + S +L+A+T L ++ +R E LGDA L Y++
Sbjct: 1008 LKDVMLSSFPEASQI------SASGILEALT-TEKCLERIS--LERFEVLGDAFLKYVVG 1058
Query: 1031 RHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
RH + G LT RS +VNN L++R
Sbjct: 1059 RHKFITYEGLDEGQLTRRRSDVVNNSHLYELSIR 1092
Score = 81 (33.6 bits), Expect = 3.3e-44, Sum P(4) = 3.3e-44
Identities = 26/88 (29%), Positives = 45/88 (51%)
Query: 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
++ +++ YC LP D+F +P+ I + I+ C + LP N+ R G +
Sbjct: 585 SVSLLHCYCDNLPRDMFFTPSPVFFY--IDGIEGII--CRLILPPNAAF-RQADGQPCLS 639
Query: 64 KLLAWRIAAMEACRVLYELKELDNDLMP 91
K A R A ++AC L++L L + L+P
Sbjct: 640 KDEAKRDACLKACVKLHKLGALTDFLLP 667
Score = 67 (28.6 bits), Expect = 3.3e-44, Sum P(4) = 3.3e-44
Identities = 35/137 (25%), Positives = 60/137 (43%)
Query: 318 YFYVAEIMTNVHPRSMFPSRTNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSCRLNFLT 377
+F+V I+ ++ S ++ T+ E++ ++ +++ + EQPLL N L
Sbjct: 894 FFFVDGILDEINAWS-----EHSGATYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLH 948
Query: 378 PRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELCLIHPFPASL-WRKSVSL-PSILY 435
NR L + L PELC + S S+SL PS++Y
Sbjct: 949 ----NR----LPETTESEGRELLEHFVE---LPPELCSLKVIGFSKDMGSSLSLLPSLMY 997
Query: 436 RLNALLLADEIRTAVAS 452
RL LL+A E++ + S
Sbjct: 998 RLENLLVAIELKDVMLS 1014
Score = 37 (18.1 bits), Expect = 4.2e-41, Sum P(4) = 4.2e-41
Identities = 9/23 (39%), Positives = 12/23 (52%)
Query: 491 NDVIVDDTEVNDTKEDDSAVNEI 513
N V V + N+ EDDS E+
Sbjct: 674 NKVSVTNNSSNNKVEDDSLREEL 696
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 382 (139.5 bits), Expect = 5.1e-44, Sum P(4) = 5.1e-44
Identities = 96/257 (37%), Positives = 138/257 (53%)
Query: 921 HSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKV------IPPVTNPESKHLSDV 974
H + K+IAD VEAL+GA+L++ G +GA+ F+ W+G+ V + ++L
Sbjct: 1228 HWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLPLT 1287
Query: 975 LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLY 1034
+ + E ++Y+F K L+QA H SY + CYQRLEFLGDA+LDYL+T + +
Sbjct: 1288 TRNNLETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTSYFF 1346
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDF 1094
PG LTDLRS VNN A++AV F S LHEVI+ + A +
Sbjct: 1347 TVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLASSPL 1406
Query: 1095 TLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
Q EG PK LGDL ES GA++LD G +L+ VW + + ++
Sbjct: 1407 ASGQS----EGP-------RCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFL-DPVK 1454
Query: 1155 RLSVSVPKSPIRELLEL 1171
LS ++ SPI+EL+EL
Sbjct: 1455 NLS-NLQISPIKELIEL 1470
Score = 121 (47.7 bits), Expect = 1.1e-09, Sum P(4) = 1.1e-09
Identities = 38/133 (28%), Positives = 64/133 (48%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKH- 1073
+RLE LGDA L + ++RHL+ + G LT RS +VNN LA++ + +
Sbjct: 1119 ERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYIRDQ 1178
Query: 1074 -LSPGL-----HEVIQRFVKMQAENDFTLNQEYYLME---GE--CDEAEDIEVPKALGDL 1122
L P H ++ ++ +LN++ ++E GE C + K + D+
Sbjct: 1179 ALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHWLYKKTIADV 1238
Query: 1123 FESVAGAIYLDSG 1135
E++ GA +DSG
Sbjct: 1239 VEALVGAFLVDSG 1251
Score = 109 (43.4 bits), Expect = 5.1e-44, Sum P(4) = 5.1e-44
Identities = 23/57 (40%), Positives = 38/57 (66%)
Query: 776 HTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQK 832
H S +RLE +GD+FLK+A++ L+ + ++ EG+L+ RS V+N NL +L +K
Sbjct: 1113 HERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKK 1169
Score = 105 (42.0 bits), Expect = 5.1e-44, Sum P(4) = 5.1e-44
Identities = 27/95 (28%), Positives = 50/95 (52%)
Query: 3 NAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMP 62
++I ++ +YC+RLP D F + P + E + C I LP N+P+ + +P
Sbjct: 655 SSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTI--CRITLPANAPISE-IESSLLP 711
Query: 63 TKLLAWRIAAMEACRVLYELKELDNDLMPVTKEFI 97
+ A + A ++A L+ L L++ L+P +K+ I
Sbjct: 712 STEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEI 746
Score = 99 (39.9 bits), Expect = 9.6e-08, Sum P(3) = 9.6e-08
Identities = 19/52 (36%), Positives = 30/52 (57%)
Query: 771 PDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
P H G +RLE +GD+ L Y +T + + +P + G+L+ LRS V+N
Sbjct: 1316 PSYNRHGGGCYQRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNN 1367
Score = 68 (29.0 bits), Expect = 5.1e-44, Sum P(4) = 5.1e-44
Identities = 38/145 (26%), Positives = 64/145 (44%)
Query: 314 FEPTYFYVAEIMTNVHPRSMF-PSR-TNTYQTFEEYYSLKYGLQIQNLEQPLLDVDHTSC 371
+ +++VA+I H R+ F P + ++T E Y L YG+++++ QPLL V C
Sbjct: 965 YSKQFYFVADIC---HGRNGFSPVKESSTKSHVESIYKL-YGVELKHPAQPLLRVKPL-C 1019
Query: 372 RLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPELC--LIHPFPASLWRKSVS 429
+ L NR NL + PEL I +
Sbjct: 1020 HVRNLLH---NRMQTNLEPQELDEYFIE---------IPPELSHLKIKGLSKDIGSSLSL 1067
Query: 430 LPSILYRLNALLLADEIRTAVASEI 454
LPSI++R+ LL+A E++ +++ I
Sbjct: 1068 LPSIMHRMENLLVAIELKHVLSASI 1092
Score = 44 (20.5 bits), Expect = 2.6e-37, Sum P(4) = 2.6e-37
Identities = 9/22 (40%), Positives = 15/22 (68%)
Query: 878 SLPNLKELSPEKVLEIIK-QKC 898
S+P + E+S +VLE + +KC
Sbjct: 1091 SIPEIAEVSGHRVLEALTTEKC 1112
Score = 39 (18.8 bits), Expect = 4.5e-29, Sum P(2) = 4.5e-29
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 888 EKVLEIIKQKCV-DLDCTVD 906
E +LE IKQ+C+ L +D
Sbjct: 354 ENMLEDIKQRCLASLKLLID 373
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 219 (82.2 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 38/65 (58%), Positives = 52/65 (80%)
Query: 792 LKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDNWLP 851
LK+AIT +L+CTYP+ HEG+LS++RSK+VSN NL++LGK+K M+ + F+P NWLP
Sbjct: 2 LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP 61
Query: 852 PGYFV 856
PGY V
Sbjct: 62 PGYVV 66
Score = 171 (65.3 bits), Expect = 9.7e-28, Sum P(2) = 9.7e-28
Identities = 36/86 (41%), Positives = 53/86 (61%)
Query: 902 DCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIP 961
+C VD QS+ Y+L T+ I DKSIADCVEAL+G YL CG R A LF+ LGLKV+P
Sbjct: 213 NCGVDTGKQSI-SYDLHTEQCIADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLP 271
Query: 962 PVTNPESKHLSDVLLDGFDKFEESIN 987
+ + + + F+ +++++
Sbjct: 272 VIKRTDREKALCPTRENFNSQQKNLS 297
Score = 153 (58.9 bits), Expect = 7.4e-26, Sum P(2) = 7.4e-26
Identities = 33/69 (47%), Positives = 45/69 (65%)
Query: 946 RGALLFMSWLGLKVIPP---VTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTH 1002
R ++L S G IPP +P++ + L+ GF+ FE+ INYRFK+K+YLLQA TH
Sbjct: 309 RSSVLKDSEYGCLKIPPRCMFDHPDADKTLNHLISGFENFEKKINYRFKNKAYLLQAFTH 368
Query: 1003 ASYFLNTLT 1011
ASY NT+T
Sbjct: 369 ASYHYNTIT 377
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 604 DVEDDFRENEKE 615
D EDDF E ++E
Sbjct: 116 DYEDDFLEYDQE 127
Score = 37 (18.1 bits), Expect = 6.2e-08, Sum P(3) = 6.2e-08
Identities = 7/14 (50%), Positives = 10/14 (71%)
Query: 531 DSGNEQENEDEEKL 544
D E+E+E+EE L
Sbjct: 93 DEDYEEEDEEEESL 106
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 230 (86.0 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 71/228 (31%), Positives = 110/228 (48%)
Query: 926 KSIADCVEALIGAYLIECGPRGALLFMSWLGLKVIPPVT----------NPESKHLSDVL 975
K IAD VEA IGA L++ G AL L + ++ N + L +V
Sbjct: 1020 KRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQ 1079
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNT-LTDCYQRLEFLGDAILDYLITRHLY 1034
EE+I Y FK+K L A H S + + YQ+LEFLGDA+LDY+I ++LY
Sbjct: 1080 FPYSSYIEETIGYSFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLY 1139
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKM-QAEND 1093
+ + G LTD +S V N + + L H + +H S + + I + ++ +A +
Sbjct: 1140 KKYPNATSGELTDYKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRE 1199
Query: 1094 FTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTV 1141
++ E I+ PK + D E++ AI+LDSG SL ++
Sbjct: 1200 TASENPWFWFE--------IDSPKFISDTLEAMICAIFLDSGFSLQSL 1239
Score = 107 (42.7 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 25/72 (34%), Positives = 39/72 (54%)
Query: 783 RLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATK 842
RLE GD FLK +I ++ +P+ E +L R K +SN NL+K+ + ++T
Sbjct: 931 RLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCELPKYALSTP 990
Query: 843 FEPRDNWLPPGY 854
E R +W P G+
Sbjct: 991 LEIR-HWCPYGF 1001
Score = 52 (23.4 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 26/115 (22%), Positives = 45/115 (39%)
Query: 4 AIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHKMPT 63
A+ ++ +C L D++TR P T S + + LP + + G +
Sbjct: 537 AVSLLYNFCNTLSRDVYTRYYPTFTAQPCL---SGWYCFEVELPKACKVP-AAQGSPAKS 592
Query: 64 KLLAWRIAAMEACRVLYELKELDNDLMPVT--KEFINLYENTEPVVPKTPEIETY 116
A + AA C L + +D L P+ ++ +L E + IETY
Sbjct: 593 IRKAKQNAAFIMCLDLIRMGLIDKHLKPLDFRRKIADLETLEEDELKDEGYIETY 647
Score = 46 (21.3 bits), Expect = 2.9e-20, Sum P(4) = 2.9e-20
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 416 IHPFPASLWRKSVSLPSILYRLNALLLA 443
I P L ++ +PSILY + LL+A
Sbjct: 871 ILPVSRHLKNSALLIPSILYHIENLLVA 898
Score = 41 (19.5 bits), Expect = 3.3e-19, Sum P(3) = 3.3e-19
Identities = 12/41 (29%), Positives = 20/41 (48%)
Query: 427 SVSLPSIL--YRLNALLLADEIRTAVASEIGLGKVILDEKV 465
S LP +L Y+ + +A + T + G GK +L K+
Sbjct: 5 SFLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKL 45
Score = 39 (18.8 bits), Expect = 5.9e-19, Sum P(4) = 5.9e-19
Identities = 10/41 (24%), Positives = 17/41 (41%)
Query: 134 FTNCRPSVNT-PC----YLYAVKMKLTCPIPDEQNKRGRKI 169
+T P+ PC Y + V++ C +P Q + I
Sbjct: 553 YTRYYPTFTAQPCLSGWYCFEVELPKACKVPAAQGSPAKSI 593
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 198 (74.8 bits), Expect = 3.9e-20, Sum P(5) = 3.9e-20
Identities = 58/158 (36%), Positives = 83/158 (52%)
Query: 915 YNLVTQHSIPDKSIADCVEALIGAYLIECGPRGA----LLFMSWLGL---KVIPPVTNPE 967
Y + S+ K +AD VEALIGA I+ G A + F+ + L K+ P + P
Sbjct: 985 YASASTRSMSAKVLADVVEALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPM 1044
Query: 968 SK-HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILD 1026
SK H L+ + E I Y FKDK+ L++A+TH S +T YQRLEFLGDA+LD
Sbjct: 1045 SKDHKKPHLIQQ-ENLENHIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLD 1103
Query: 1027 YLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVR 1064
LI + G +T ++ A+VN + A L ++
Sbjct: 1104 MLIVDLIRAHHVECQQGEMTKIKHAIVNGHLLAFLCMQ 1141
Score = 97 (39.2 bits), Expect = 3.9e-20, Sum P(5) = 3.9e-20
Identities = 23/71 (32%), Positives = 33/71 (46%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+R E GDS LK+ + L+ PN HEG L+ V N L + + +I+
Sbjct: 909 QRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYIISN 968
Query: 842 KFEPRDNWLPP 852
+F PR W P
Sbjct: 969 RFTPR-KWSAP 978
Score = 70 (29.7 bits), Expect = 3.9e-20, Sum P(5) = 3.9e-20
Identities = 27/106 (25%), Positives = 48/106 (45%)
Query: 11 YCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLP--INSPLKRSVTGHKMPTKLLAW 68
+C LP + P + + +D + + LP +N ++R+ T+ A
Sbjct: 535 FCDTLPRQNYVEDKPEFSF---ERNDGGLLRAKVILPSSVNPKVRRAEGKAWWKTERAAK 591
Query: 69 RIAAMEACRVLYELKELDNDLMPVTK--EFINLYENTEPVVPKTPE 112
+ AA A + LYE ++++L+P+TK EF + P V K E
Sbjct: 592 KEAAFYAYKALYEHGLVNDNLLPLTKSREFTRKDISLLPAVQKVSE 637
Score = 61 (26.5 bits), Expect = 9.0e-05, Sum P(4) = 9.0e-05
Identities = 19/54 (35%), Positives = 31/54 (57%)
Query: 907 MNVQSVVPYNLVTQ-HSIPDKSIADCVEALIGAYLIECG-PRGALL-FMSWLGL 957
+N + P++L + H+ DK +D VE++IGA ++ G GA F+ LGL
Sbjct: 1214 LNNTTAYPWSLFSAIHA--DKFFSDVVESIIGAIFVDSGGDLGACAGFIERLGL 1265
Score = 58 (25.5 bits), Expect = 3.9e-20, Sum P(5) = 3.9e-20
Identities = 12/26 (46%), Positives = 16/26 (61%)
Query: 1113 IEVPKALGDLFESVAGAIYLDSGMSL 1138
I K D+ ES+ GAI++DSG L
Sbjct: 1228 IHADKFFSDVVESIIGAIFVDSGGDL 1253
Score = 57 (25.1 bits), Expect = 3.9e-20, Sum P(5) = 3.9e-20
Identities = 18/50 (36%), Positives = 24/50 (48%)
Query: 405 KKQLLVPELCLIHPFPASLWRKSVSLPSILYRLNALLLADEIRTAVASEI 454
KK++L C I PAS +P IL RL A L+A + V +I
Sbjct: 836 KKRILSASHCTIDRLPASETVFGRFIPVILDRLEAALVATRLCETVLRDI 885
Score = 49 (22.3 bits), Expect = 4.8e-18, Sum P(5) = 4.8e-18
Identities = 32/122 (26%), Positives = 53/122 (43%)
Query: 27 ITISEIKEDDSIMFTCSIRLPINSPLKR---SVTGHKMP------TKLLAWRIAAMEACR 77
I + + +ED S+ F P +P+K S T + + L A I M A
Sbjct: 659 ILVRQNEEDTSMKFITPTATPPIAPMKLCWDSETTYTLEFEAAGAVSLTAENIERMRAAT 718
Query: 78 VLYELKELDNDLMPVTKEFINLYENTEPVVPKTPEIETYPDSTKRRQFYHKRMASCFTNC 137
LY L+ + + K++I L+ P +P E+ET+ K+ Q H+ F++
Sbjct: 719 SLY-LQATTSTPLAGNKDYIALFG---PDLP-WDELETW---LKKNQG-HEPAIQVFSSQ 769
Query: 138 RP 139
RP
Sbjct: 770 RP 771
Score = 37 (18.1 bits), Expect = 3.9e-18, Sum P(5) = 3.9e-18
Identities = 7/16 (43%), Positives = 8/16 (50%)
Query: 568 WSNEMA-AGVECKPYP 582
W N +EC PYP
Sbjct: 793 WLNRSGDLELECDPYP 808
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 233 (87.1 bits), Expect = 4.0e-18, P = 4.0e-18
Identities = 70/211 (33%), Positives = 110/211 (52%)
Query: 973 DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH 1032
D L++ + E+ +NY+FKDKS LL+A T ASY ++ ++ Y+ LE LGD+IL+ I
Sbjct: 24 DQLME-IESLEKILNYKFKDKSLLLKAFTDASY-VDDKSESYELLELLGDSILNMGIIYD 81
Query: 1033 LYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAEN 1092
+ +PG LT LR+ V+ A +AV + + +H P L E I FV +A
Sbjct: 82 FIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFV--EAME 139
Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
+ L+ L +VPK L D+ ES GAI++D S +TVWKV +++
Sbjct: 140 KYPLHSNGLL-----------KVPKVLADIVESTIGAIFMDCN-STETVWKVIKPLLEPI 187
Query: 1153 IERLSVSVPKSPIRELLEL-EPENARFSKPE 1182
I L + P+ EL E+ + N + + +
Sbjct: 188 IH-LD-KMKSHPMTELNEMCQKRNLKLTSKD 216
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 249 (92.7 bits), Expect = 4.2e-18, P = 4.2e-18
Identities = 73/259 (28%), Positives = 129/259 (49%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
++ + E+ +NY+F +KS L +A+TH S T Y+RLEF+GD+ + I+ +LY
Sbjct: 57 MESMEAVEKILNYKFSNKSLLKEAITHTSC---TDFPSYERLEFIGDSAIGLAISNYLYL 113
Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
+ P L+ LR+A V+ A +++ G + F + +P L E ++ F + + D
Sbjct: 114 TYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKED-D 172
Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
L+ Y G ++ PK L DLFES+AGA+Y+D L +W ++ +++ +
Sbjct: 173 LSVSY----GGL-----VKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTL 223
Query: 1156 LSVSVPKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGR--NYCIAK 1213
+ P+ L +L ++ + + DG V + V ++ GR N IA+
Sbjct: 224 DDLQKQPQPVSMLFKLCHKHKKRIDIKNWKDGN-VSIAV-IYLDDELLASGRAENKDIAR 281
Query: 1214 CTAAKCALKHLKSAKPADV 1232
AAK AL+ L P ++
Sbjct: 282 LIAAKEALRKLSEVFPVEM 300
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 143 (55.4 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 34/94 (36%), Positives = 51/94 (54%)
Query: 977 DGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHL 1033
+ F F+E I F D+ L+QA TH+SY ++ RLEFLGDA+L+ ++++L
Sbjct: 17 EAFKLFQEKIGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYL 76
Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGF 1067
++ S G LT LR+A+V A L F
Sbjct: 77 FQKYPTMSEGELTKLRAAIVCEPSLVRFANELSF 110
Score = 103 (41.3 bits), Expect = 3.5e-13, Sum P(2) = 3.5e-13
Identities = 47/142 (33%), Positives = 68/142 (47%)
Query: 1092 NDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS 1151
N+ + L +GE + E P L D+FE+ GA+YLD G L+TVW EI+
Sbjct: 106 NELSFGSLVLLGKGE-EMTGGRERPALLADVFEAFIGALYLDQG--LETVWGFLKEIVYP 162
Query: 1152 EIERLSVSVP---KSPIRELLELEPE-NARFS-KPEK-LADGRRV--RVTVEVFGKGSYK 1203
+I + S KS ++EL++ + N + EK A R RVT+ G
Sbjct: 163 KINEGAFSHVMDYKSQLQELIQRDGSGNIEYQILQEKGPAHNREFVSRVTLNNVALGL-- 220
Query: 1204 GIGRNYCIAKCTAAKCALKHLK 1225
G G++ A+ AA ALK LK
Sbjct: 221 GSGKSKKEAEQQAAAEALKKLK 242
Score = 95 (38.5 bits), Expect = 1.4e-07, Sum P(2) = 1.4e-07
Identities = 20/63 (31%), Positives = 37/63 (58%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIAT 841
+RLE +GD+ L+ ++ +L+ YP + EG+L+ LR+ V +L + + FG ++
Sbjct: 58 ERLEFLGDAVLELTVSQYLFQKYPTMSEGELTKLRAAIVCEPSLVRFANELSFGSLVLLG 117
Query: 842 KFE 844
K E
Sbjct: 118 KGE 120
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 163 (62.4 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 52/149 (34%), Positives = 76/149 (51%)
Query: 926 KSIADCVEALIGAYLIECGPRGALLFMS-------WLGLKVIPPVTNPESKHLSDVLLDG 978
K++AD EALIGA IE G AL +S W L V + L+D+ L
Sbjct: 1109 KTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVA--LNDIPLPS 1166
Query: 979 -FDKFEESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILDYLITRHLY-- 1034
EE + Y F KS L++A+THASY + + +RLEFLGD++LD+++ L+
Sbjct: 1167 TLGPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVVARLFSV 1226
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAV 1063
+D + LR+A+VN LA+
Sbjct: 1227 KDPAPIEHYNMHLLRTAVVNGEFLGFLAM 1255
Score = 69 (29.3 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 19/48 (39%), Positives = 27/48 (56%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVH--EGKLSHLRSKQVSNYNLFK 827
+R+E +GD+ LK + C N+H EG LS L+ + VSN L K
Sbjct: 1024 ERVEFLGDAVLKLGAAVT--CATNNLHFPEGYLSLLKDRLVSNSRLCK 1069
Score = 61 (26.5 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 409 LVPE-LCLIHPFPASLWRKSVSLPSILYRLNALLLADEI--RTAVAS 452
++PE LC PA+L + + +PSI + +A E+ RTA+ S
Sbjct: 953 IIPEQLCTFDTVPATLVQLGMLVPSITQAMEPYFVAQELLRRTALGS 999
Score = 59 (25.8 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 25/90 (27%), Positives = 41/90 (45%)
Query: 1113 IEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEI-MKSEIERLSVSVPK--SPIRELL 1169
+ + K D+ E+V GA+++DSG SL+ K+ + + ++R K P EL
Sbjct: 1336 LRISKVHSDVLEAVIGAVWVDSG-SLEECEKLIERVGILRYLDRALRDGVKILHPKEELG 1394
Query: 1170 ELEPENARFSKPEKLADGRRVRVTVEVFGK 1199
+ N K +K R V EV G+
Sbjct: 1395 RVAQNNKVVYKVDKAKRAARAEV-YEVSGE 1423
Score = 53 (23.7 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 14/59 (23%), Positives = 36/59 (61%)
Query: 43 SIRLPINSP--LKRSVTGHKMPTKLLAWRIAAMEACRVLYELKELDNDLMPVTK-EFIN 98
++ LP + P L+++ + ++ A + AA++A ++LYE ++ L+P+ + +F++
Sbjct: 654 TVLLPASLPPNLRQAHSSRDWISERNAKKDAALQAYKMLYEAGLINEHLLPIRESDFVD 712
Score = 46 (21.3 bits), Expect = 4.6e-11, Sum P(6) = 4.6e-11
Identities = 14/42 (33%), Positives = 20/42 (47%)
Query: 1099 EYYLMEGECDEAEDIEV--PKALGD-LFESVAGAIYLDSGMS 1137
E Y + GE E ED+E +GD V GA+ + M+
Sbjct: 1416 EVYEVSGELAEGEDVEFLCSVTVGDRCVARVGGAVSKNDAMT 1457
Score = 41 (19.5 bits), Expect = 1.3e-09, Sum P(6) = 1.3e-09
Identities = 10/22 (45%), Positives = 15/22 (68%)
Query: 672 DKLTFYEGQLELIKNRIDVENT 693
+ L F EG L L+K+R+ V N+
Sbjct: 1045 NNLHFPEGYLSLLKDRL-VSNS 1065
Score = 40 (19.1 bits), Expect = 2.6e-12, Sum P(6) = 2.6e-12
Identities = 17/51 (33%), Positives = 22/51 (43%)
Query: 146 YLYAVKMKLTCPI-PDEQNKRGR-KIHPPENSPQGLAI-LTTKYIPKVCSF 193
Y+Y K P+ P + RG K P E P A + K +PK C F
Sbjct: 882 YIY----KSWVPVKPPLELVRGYWKAKPDEEEPPADAPWVVVKRLPKNCGF 928
Score = 39 (18.8 bits), Expect = 9.1e-09, Sum P(5) = 9.1e-09
Identities = 7/28 (25%), Positives = 13/28 (46%)
Query: 546 KIKSDENKTESQGVEPWVEIGTWSNEMA 573
K+ + T V+ W ++ TW +A
Sbjct: 134 KVANSIVMTGDDNVDSWSDVQTWDAVLA 161
Score = 37 (18.1 bits), Expect = 9.1e-09, Sum P(5) = 9.1e-09
Identities = 5/11 (45%), Positives = 9/11 (81%)
Query: 635 EEESALKIQDW 645
EE+S + ++DW
Sbjct: 550 EEDSLVSVKDW 560
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 127 (49.8 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 34/97 (35%), Positives = 53/97 (54%)
Query: 975 LLDGFDKFEESINYRFKDKSYLLQAMTHASYFL---NTLTDCYQRLEFLGDAILDYLITR 1031
+LD + E+S+ +F++ S L QA+ H S+ N L+ +R+EFLGDA+L +
Sbjct: 1 MLD-LTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFAD 59
Query: 1032 HLYEDERAHSPGTLTDLRSALVN--NIIFASLAVRLG 1066
LY D G LT RS LV +++ +L + LG
Sbjct: 60 RLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLG 96
Score = 108 (43.1 bits), Expect = 7.8e-12, Sum P(2) = 7.8e-12
Identities = 42/143 (29%), Positives = 73/143 (51%)
Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
L + YL GE D ++ P L FE+V AIYLD G +D +V + + K+E+ER
Sbjct: 95 LGKYLYLGRGE-DASKGRFKPANLAGAFEAVLAAIYLDKG--IDATREVIFRLFKTEMER 151
Query: 1156 ---LSVSVP-KSPIRELLELEPE-NARFSKPEKLADGRRVRVTVEVFGKGSY--KGIGRN 1208
LS ++ KS ++EL++ + + R+ + EV+ + +G GR+
Sbjct: 152 VQTLSSNIDYKSRLQELVQAQFQLTPRYRIIDFSGPEHNHLFIAEVYTEDKVLAEGSGRS 211
Query: 1209 YCIAKCTAAKCALKHLKSAKPAD 1231
A+ +AAK AL+ +++ A+
Sbjct: 212 KKEAETSAAKEALQQFENSFTAE 234
Score = 86 (35.3 bits), Expect = 2.7e-07, Sum P(2) = 2.7e-07
Identities = 26/79 (32%), Positives = 38/79 (48%)
Query: 775 NHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK------L 828
NH S +R+E +GD+ L LY +P++ EG L+ RS V +L + L
Sbjct: 36 NHLSGSNERMEFLGDAVLGVIFADRLYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINL 95
Query: 829 GKQKVFGESMIATK--FEP 845
GK G A+K F+P
Sbjct: 96 GKYLYLGRGEDASKGRFKP 114
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 170 (64.9 bits), Expect = 2.1e-11, P = 2.1e-11
Identities = 38/95 (40%), Positives = 56/95 (58%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
+ +K E S+ Y FKDK+ L+ A+TH S F + + +RLEFLGDA+LD ++ +L+
Sbjct: 1 MKNIEKLERSLTYEFKDKNLLIHALTHKS-FKKSYNN--ERLEFLGDAVLDLVVGEYLFH 57
Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
+ G L+ LR+ALVN FA +A L F
Sbjct: 58 KFAKDAEGDLSKLRAALVNEKSFAKIANSLNLGDF 92
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 176 (67.0 bits), Expect = 3.4e-09, P = 3.4e-09
Identities = 52/197 (26%), Positives = 92/197 (46%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
++ + E+ +NY F +K+ L +A+T S + RLEF GD+IL+ T ++
Sbjct: 1 MNSVEAVEKILNYSFVNKTLLKEAITQKS-------PLFDRLEFFGDSILEVAFTNYICH 53
Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFT 1095
L DLR+A V+N FA +AV HHF +P L + ++ F + + D
Sbjct: 54 TYPNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDP 113
Query: 1096 LNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIER 1155
+ Y G ++ PK L D ES+A +++D + +W+++ +++
Sbjct: 114 V--PY----GGL-----VKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTP 162
Query: 1156 LSVSV-PKSPIRELLEL 1171
+ + PK P L L
Sbjct: 163 DDLLLQPKLPFLTLFRL 179
Score = 151 (58.2 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 57/253 (22%), Positives = 112/253 (44%)
Query: 983 EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHSP 1042
E+ +NY F +K+ L + +TH + + +Q L F+G++ L T+HLY P
Sbjct: 419 EKILNYSFVNKTLLKELLTHNN------SPLFQGLMFVGESALSLAFTKHLYLTYPMLEP 472
Query: 1043 GTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQEYYL 1102
L+ LR A + +A +AV+ G + F P ++ F+++ + D
Sbjct: 473 KDLSVLRDANTCHDKYACVAVKKGIYQSFIGSVPKPEKMTTDFIELMGKED--------- 523
Query: 1103 MEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKS--EIERLSVSV 1160
D ++ PK L +L VAGA+Y+D ++ + +++ +++ ++ L + +
Sbjct: 524 -----DPYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQL 578
Query: 1161 PKSPIRELLELEPENARFSKPEKLADGRRVRVTVEVFGKGSY--KGIGRNYCIAKCTAAK 1218
K P L L ++ + DG + +V+ + G + AK AA+
Sbjct: 579 -KQPFLMLFRLADKHGKQIDFRYSKDGGSRKNIAQVYMDDMFIASGCAKRIDTAKLLAAE 637
Query: 1219 CALKHLKSAKPAD 1231
A++ L P +
Sbjct: 638 EAIQKLSECMPIE 650
Score = 86 (35.3 bits), Expect = 5.6e-10, Sum P(2) = 5.6e-10
Identities = 22/48 (45%), Positives = 28/48 (58%)
Query: 777 TGPSP--KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
T SP RLE GDS L+ A T ++ TYPN+ +L LR+ VSN
Sbjct: 26 TQKSPLFDRLEFFGDSILEVAFTNYICHTYPNLKVKELRDLRTANVSN 73
Score = 42 (19.8 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 705 QSFDNASNPSKNTAILTEILENINKLNTYGSVEKDVKTE 743
+S D +NP ++ + +E + K+ Y V K + E
Sbjct: 396 KSLDEKNNPLLFSSEMDSSVEAVEKILNYSFVNKTLLKE 434
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 144 (55.7 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 39/103 (37%), Positives = 53/103 (51%)
Query: 975 LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLT-DCYQRLEFLGDAILDYLITRHL 1033
+L KFE+SI +FK L +A T S LT QRLEFLGD +L + + +L
Sbjct: 971 VLKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYL 1030
Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSP 1076
Y H G L+ LRS+LVNN A + LG + + +P
Sbjct: 1031 YRHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANP 1073
Score = 85 (35.0 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 19/58 (32%), Positives = 34/58 (58%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMI 839
+RLE +GD+ +++ +I L+ +P + EG L+ R+ V N +L L K+ E M+
Sbjct: 833 ERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFML 890
Score = 49 (22.3 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 9/18 (50%), Positives = 15/18 (83%)
Query: 927 SIADCVEALIGAYLIECG 944
++A+C EAL+GA L++ G
Sbjct: 906 AMANCFEALMGALLLDGG 923
Score = 49 (22.3 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 9/20 (45%), Positives = 13/20 (65%)
Query: 1117 KALGDLFESVAGAIYLDSGM 1136
K DL E+ GA+Y+D G+
Sbjct: 1080 KDRADLLEAFLGALYVDKGL 1099
Score = 46 (21.3 bits), Expect = 1.8e-09, Sum P(5) = 1.8e-09
Identities = 18/60 (30%), Positives = 27/60 (45%)
Query: 526 KETVCDSGNEQENEDEEKLDKIKSDENKTE-SQGVE-PW-VEIGTWSN---EMAAGVECK 579
K C S + +++ +E KI+ D E S+ V+ P V W N EM G C+
Sbjct: 337 KSEACSSSSSSDDDSDEDAFKIEQDCCMEELSRKVQHPQRVHADLWHNDAGEMNDGPLCR 396
Score = 41 (19.5 bits), Expect = 4.9e-09, Sum P(5) = 4.9e-09
Identities = 27/116 (23%), Positives = 55/116 (47%)
Query: 137 CRPSVNTPCYLYAVKMKLTCPIPDEQNKRGRKIHPPENSP--QGLAILTTKYIPKVCSFP 194
C P+ N L+ ++ ++ P + K I E+ +G ++L+ ++ ++ P
Sbjct: 420 CDPNSNNAGKLFHYRISISPPT-NFLTKTPTIIKHDEHEFLFEGFSLLS--HV-RLSDLP 475
Query: 195 IFTRCGEVEVSIEL-IDKNVVLSEENLS-NTL-IFMDYLFTKVLKLKKYLMLFDPN 247
+ C + +IE I+ EN + + L IF YLF ++L+L + ++ PN
Sbjct: 476 V---CKVIRFNIEYTIEYEEEKMPENFTIHELDIFFKYLFHELLELVDFNLM--PN 526
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 121 (47.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLITRHLY 1034
L F EE + +F + L +A T + N LT + QRLE+LGD++L +++ LY
Sbjct: 830 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 889
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
H G ++ LR++LV+N A + LGF F
Sbjct: 890 RRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 925
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
+RLE+LGDA+++ +++ HLY H G L R+ALV N A+LA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 95 (38.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
+RLE +GDS L+ ++ FLY +P HEG +S LR+ VSN
Sbjct: 870 QRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSN 910
Score = 85 (35.0 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 34/121 (28%), Positives = 51/121 (42%)
Query: 477 KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKV-EIVDKKETVCDSGNE 535
K K+K G ++ A+DV D + D N E K E+ D+K+T C+ N+
Sbjct: 165 KTPKQKGGDESFTASDVSDDSNDSQDEASTSEPTNRQAPEADKTGEVKDEKQT-CNRRNQ 223
Query: 536 QEN--------EDEEKLDKIKS--DENKTESQGVEPWVEIGT--WSNEMAAGVECK-PYP 582
Q E E ++ +K D KT G+ P + NE G EC+ P P
Sbjct: 224 QRKAKRLRNFEEKERQITLLKKGIDRKKTHPNGIHPDISFNEKGLGNE---GPECRCPEP 280
Query: 583 M 583
+
Sbjct: 281 I 281
Score = 68 (29.0 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
+RLE +GD+ ++ ++ LY + EG L+ R+ V N NL L K
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAK 739
Score = 61 (26.5 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASY 1005
D FEE I Y+F D+ + A+ H+S+
Sbjct: 608 DVFEEVIEYKFNDRRVIELALMHSSF 633
Score = 53 (23.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 32/128 (25%), Positives = 54/128 (42%)
Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWK--VYYEIMKSEIERLSVSVPKSPIRE--LLELE 1172
K DL E+ GA+Y+D G+ + V+ +K IE + KS +++ L +
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRD 998
Query: 1173 PENARFSKPEKLADG-------RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
P ++ PE G R ++ V GK N A+ A+ AL +L+
Sbjct: 999 PSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANLE 1058
Query: 1226 SAKPADVK 1233
S + +K
Sbjct: 1059 SMSFSKMK 1066
Score = 40 (19.1 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 367 DHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPE 412
D SC + + PR+V K + G +++ PE
Sbjct: 411 DVESCPMIHIMPRFVQTKDDLVQLWSSKTVLAYFTSKGSSEIMSPE 456
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 121 (47.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 33/96 (34%), Positives = 51/96 (53%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLITRHLY 1034
L F EE + +F + L +A T + N LT + QRLE+LGD++L +++ LY
Sbjct: 830 LSTFHALEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLY 889
Query: 1035 EDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
H G ++ LR++LV+N A + LGF F
Sbjct: 890 RRFPYHHEGHMSLLRTSLVSNQTQAVVCDDLGFTEF 925
Score = 99 (39.9 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 21/48 (43%), Positives = 31/48 (64%)
Query: 1015 QRLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLA 1062
+RLE+LGDA+++ +++ HLY H G L R+ALV N A+LA
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLA 738
Score = 95 (38.5 bits), Expect = 0.00019, Sum P(3) = 0.00019
Identities = 20/41 (48%), Positives = 28/41 (68%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSN 822
+RLE +GDS L+ ++ FLY +P HEG +S LR+ VSN
Sbjct: 870 QRLEWLGDSVLQLIVSDFLYRRFPYHHEGHMSLLRTSLVSN 910
Score = 85 (35.0 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 34/121 (28%), Positives = 51/121 (42%)
Query: 477 KKLKEKYGWDTKDANDVIVDDTEVNDTKEDDSAVNEICTEIAKV-EIVDKKETVCDSGNE 535
K K+K G ++ A+DV D + D N E K E+ D+K+T C+ N+
Sbjct: 165 KTPKQKGGDESFTASDVSDDSNDSQDEASTSEPTNRQAPEADKTGEVKDEKQT-CNRRNQ 223
Query: 536 QEN--------EDEEKLDKIKS--DENKTESQGVEPWVEIGT--WSNEMAAGVECK-PYP 582
Q E E ++ +K D KT G+ P + NE G EC+ P P
Sbjct: 224 QRKAKRLRNFEEKERQITLLKKGIDRKKTHPNGIHPDISFNEKGLGNE---GPECRCPEP 280
Query: 583 M 583
+
Sbjct: 281 I 281
Score = 68 (29.0 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGK 830
+RLE +GD+ ++ ++ LY + EG L+ R+ V N NL L K
Sbjct: 691 ERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATLAK 739
Score = 61 (26.5 bits), Expect = 1.6e-06, Sum P(4) = 1.6e-06
Identities = 11/26 (42%), Positives = 17/26 (65%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASY 1005
D FEE I Y+F D+ + A+ H+S+
Sbjct: 608 DVFEEVIEYKFNDRRVIELALMHSSF 633
Score = 53 (23.7 bits), Expect = 1.9e-09, Sum P(4) = 1.9e-09
Identities = 32/128 (25%), Positives = 54/128 (42%)
Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWK--VYYEIMKSEIERLSVSVPKSPIRE--LLELE 1172
K DL E+ GA+Y+D G+ + V+ +K IE + KS +++ L +
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFIESEKWNDAKSHLQQWCLAMRD 998
Query: 1173 PENARFSKPEKLADG-------RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLK 1225
P ++ PE G R ++ V GK N A+ A+ AL +L+
Sbjct: 999 PSSSEPDMPEYRVLGIEGPTNNRIFKIAVYYKGKRLASAAESNVHKAELRVAELALANLE 1058
Query: 1226 SAKPADVK 1233
S + +K
Sbjct: 1059 SMSFSKMK 1066
Score = 40 (19.1 bits), Expect = 4.5e-05, Sum P(4) = 4.5e-05
Identities = 10/46 (21%), Positives = 17/46 (36%)
Query: 367 DHTSCRLNFLTPRYVNRKGINLAXXXXXXXXXXXXXLGKKQLLVPE 412
D SC + + PR+V K + G +++ PE
Sbjct: 411 DVESCPMIHIMPRFVQTKDDLVQLWSSKTVLAYFTSKGSSEIMSPE 456
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 138 (53.6 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FEE+I F L +A T + N LT + Q
Sbjct: 339 LQLQEPNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 397
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 398 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 452
Score = 89 (36.4 bits), Expect = 2.2e-09, Sum P(2) = 2.2e-09
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 209 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 264
Query: 828 LGKQ 831
L K+
Sbjct: 265 LAKK 268
Score = 41 (19.5 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 321 VAEIMTNVHPRSMFPS 336
V E +T+VH +FPS
Sbjct: 228 VVEFLTSVHLYYLFPS 243
>ZFIN|ZDB-GENE-070209-23 [details] [associations]
symbol:rnasen "ribonuclease type III, nuclear"
species:7955 "Danio rerio" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 ZFIN:ZDB-GENE-070209-23
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 OMA:SGKEKNY
EMBL:BX571950 IPI:IPI00499713 Ensembl:ENSDART00000089017
ArrayExpress:F1QKS5 Bgee:F1QKS5 Uniprot:F1QKS5
Length = 1289
Score = 144 (55.7 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 43/115 (37%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L+V P+T+ + S VL FE++I F L +A T + N LT + Q
Sbjct: 1006 LQVQEPLTDRQLIESSPVL-QKLTNFEDAIGVLFTHVRLLARAFTLRTVGFNHLTLGHNQ 1064
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG F
Sbjct: 1065 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1119
Score = 89 (36.4 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 876 DPSPSRINHN----ERLEFLGDAVVEFLTSVHLYHLFPSLEEGGLATYRTAIVQNQHLAM 931
Query: 828 LGKQ 831
L K+
Sbjct: 932 LAKK 935
Score = 43 (20.2 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 16/53 (30%), Positives = 28/53 (52%)
Query: 202 VEVSIELIDKNVVLSEEN--LSNTLIFMDYLFTKVLKLKKYLMLFDPNCSENS 252
++ +I I++ ++ EN + +F YLF +L+L + L DP ENS
Sbjct: 546 IDYTIHFIEE---MAPENYCVKGLELFSSYLFKDILELYDW-NLTDPE--ENS 592
Score = 42 (19.8 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 321 VAEIMTNVHPRSMFPS 336
V E +T+VH +FPS
Sbjct: 895 VVEFLTSVHLYHLFPS 910
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 127 (49.8 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 28/97 (28%), Positives = 54/97 (55%)
Query: 976 LDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYE 1035
++ +K E + ++F + L A+TH S + D +RLEFLGD++L ++I LY+
Sbjct: 1 MNHLNKLMERLGHQFNNLELLKIALTHCS----SGADNNERLEFLGDSVLGFIIASELYQ 56
Query: 1036 DERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
G L+ +R+++VN A ++ +LG + + +
Sbjct: 57 RRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYLQ 93
Score = 74 (31.1 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 33/117 (28%), Positives = 51/117 (43%)
Query: 1119 LGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIERLSVSVPKSPIRELLELEPENARF 1178
L D E++ GAIY+D+G L+T + ++ LS PK + LL+ + R
Sbjct: 110 LADALEAIVGAIYIDAG--LETCRRCVLNWYGERVDDLSKLSPKKDAKSLLQEWLQARRL 167
Query: 1179 SKPE---KLADGRRVRV-TVEVFGKG-SYK--GIGRNYCIAKCTAAKCALKHLKSAK 1228
P K+ + TV + KG +K G+ A+ AAK L+ L K
Sbjct: 168 PLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELLDDGK 224
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 138 (53.6 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 38/97 (39%), Positives = 52/97 (53%)
Query: 975 LLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFLGDAILDYLITRHL 1033
+L +FEE+I F L +A T + N LT + QR+EFLGD+I+ + T +L
Sbjct: 1065 VLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYL 1124
Query: 1034 YEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
+ H G LT LRS+LVNN A +A LG F
Sbjct: 1125 FIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEF 1161
Score = 88 (36.0 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 21/64 (32%), Positives = 35/64 (54%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P + EG L+ R+ V N +L
Sbjct: 918 DPAPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAM 973
Query: 828 LGKQ 831
L K+
Sbjct: 974 LAKK 977
Score = 42 (19.8 bits), Expect = 9.0e-08, Sum P(3) = 9.0e-08
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
+L+ P ++ D SC R +F+ PR+V
Sbjct: 625 HLKGPSVENDSVSCPRFHFM-PRFV 648
Score = 37 (18.1 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 11/45 (24%), Positives = 23/45 (51%)
Query: 523 VDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQ-GVEPWVEIG 566
+ KE+ ++ + E+ED+E L + +ES +P ++G
Sbjct: 349 IKDKESEENASEKNEDEDDELLKPVWVRCTHSESYYSNDPMDQVG 393
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 138 (53.6 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FEE+I F L +A T + N LT + Q
Sbjct: 730 LQLQEPNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 788
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 789 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 843
Score = 89 (36.4 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 600 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 655
Query: 828 LGKQ 831
L K+
Sbjct: 656 LAKK 659
Score = 40 (19.1 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1083 QRFVKMQAENDFT-LNQEYYLMEGECDEAEDIE 1114
+RF++ + + + E E E DEAEDI+
Sbjct: 985 KRFIERKYRQELKEMRWEREHQEREPDEAEDIK 1017
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(4) = 1.4e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 307 NLKGPLFEDSPPCCPRFHFM-PRFV 330
Score = 37 (18.1 bits), Expect = 2.1e-07, Sum P(4) = 2.1e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 254 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 310
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 311 PLFEDSPPCCPRFHFM 326
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 138 (53.6 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FEE+I F L +A T + N LT + Q
Sbjct: 1085 LQLQEPNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 1143
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 1144 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198
Score = 89 (36.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 955 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 1010
Query: 828 LGKQ 831
L K+
Sbjct: 1011 LAKK 1014
Score = 39 (18.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 662 NLKGPLFEDSPPCCPRFHFM-PRFV 685
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 609 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 665
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 666 PLFEDSPPCCPRFHFM 681
>UNIPROTKB|Q9NRR4 [details] [associations]
symbol:DROSHA "Ribonuclease 3" species:9606 "Homo sapiens"
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0042254 "ribosome
biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0010586 "miRNA metabolic process" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IEA] [GO:0005730
"nucleolus" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0010467 GO:GO:0005654
GO:GO:0005730 GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0042254
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
BRENDA:3.1.26.3 PANTHER:PTHR11207 KO:K03685 EMBL:AF189011
EMBL:AC008768 EMBL:AC022417 EMBL:AC106802 EMBL:AJ242976
EMBL:AK001121 EMBL:BC041162 EMBL:BC054003 EMBL:AF116910
IPI:IPI00219990 IPI:IPI00300956 IPI:IPI00942044 RefSeq:NP_037367.3
UniGene:Hs.97997 PDB:2KHX PDBsum:2KHX ProteinModelPortal:Q9NRR4
SMR:Q9NRR4 DIP:DIP-33300N IntAct:Q9NRR4 MINT:MINT-1184869
STRING:Q9NRR4 PhosphoSite:Q9NRR4 DMDM:20139357 PaxDb:Q9NRR4
PRIDE:Q9NRR4 Ensembl:ENST00000344624 Ensembl:ENST00000511367
GeneID:29102 KEGG:hsa:29102 UCSC:uc003jhg.2 CTD:29102
GeneCards:GC05M031401 H-InvDB:HIX0004780 HGNC:HGNC:17904 MIM:608828
neXtProt:NX_Q9NRR4 PharmGKB:PA142671060 HOGENOM:HOG000122291
HOVERGEN:HBG023130 InParanoid:Q9NRR4 OMA:SGKEKNY OrthoDB:EOG4VQ9NG
ChiTaRS:DROSHA EvolutionaryTrace:Q9NRR4 GenomeRNAi:29102
NextBio:52141 ArrayExpress:Q9NRR4 Bgee:Q9NRR4 CleanEx:HS_RNASEN
Genevestigator:Q9NRR4 GermOnline:ENSG00000113360 Uniprot:Q9NRR4
Length = 1374
Score = 138 (53.6 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FEE+I F L +A T + N LT + Q
Sbjct: 1086 LQLQEPNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 1144
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 1145 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1199
Score = 89 (36.4 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 956 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 1011
Query: 828 LGKQ 831
L K+
Sbjct: 1012 LAKK 1015
Score = 39 (18.8 bits), Expect = 1.6e-07, Sum P(3) = 1.6e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 663 NLKGPLFEDSPPCCPRFHFM-PRFV 686
Score = 37 (18.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 610 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 666
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 667 PLFEDSPPCCPRFHFM 682
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 135 (52.6 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FE++I F L +A T + N LT + Q
Sbjct: 1040 LQLQEPNTDRQLIETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 1098
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 1099 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1153
Score = 89 (36.4 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 910 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 965
Query: 828 LGKQ 831
L K+
Sbjct: 966 LAKK 969
Score = 39 (18.8 bits), Expect = 2.9e-07, Sum P(3) = 2.9e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 617 NLKGPLFEDSPPCCPRFHFM-PRFV 640
Score = 37 (18.1 bits), Expect = 4.5e-07, Sum P(3) = 4.5e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 564 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 620
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 621 PLFEDSPPCCPRFHFM 636
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 135 (52.6 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 41/115 (35%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FE++I F L +A T + N LT + Q
Sbjct: 1080 LQLQEPNTDRQLIETSPVL-QKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 1138
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 1139 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1193
Score = 89 (36.4 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 950 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 1005
Query: 828 LGKQ 831
L K+
Sbjct: 1006 LAKK 1009
Score = 39 (18.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 655 NLKGPLFEDSPPCCPRFHFM-PRFV 678
Score = 37 (18.1 bits), Expect = 5.0e-07, Sum P(3) = 5.0e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 602 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 658
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 659 PLFEDSPPCCPRFHFM 674
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 119 (46.9 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 965 NPESKHLSDVLLDG--FDKFEESINYR-FKDKSYLLQAMTH--ASYFLNTLTDCYQRLEF 1019
N E + D L++ +D+ + +N F D++ L + H ++ N T+ +RLEF
Sbjct: 1047 NDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNNTNFSERLEF 1106
Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
LGDA+LD+++ +L+ + G LT+ +S LVNN
Sbjct: 1107 LGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNN 1142
Score = 93 (37.8 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 729 KLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIG 788
K NT V ++V T P + S E I S ++P ++++ +RLE +G
Sbjct: 884 KNNTNNQVLREVLTHPSTKVIS-ERKPIEKDQFQS-----YRPFMKDY-----QRLEFLG 932
Query: 789 DSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDN 848
DS LK +++L+ + N EG LS R N L +L ++ F + T D+
Sbjct: 933 DSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITTIG--DH 990
Query: 849 WLPPGYFVPKYLETALIEAGFPASL-W 874
P + ++ IE GF S W
Sbjct: 991 SKPHADLIEAFIGAIYIECGFKDSFDW 1017
Score = 48 (22.0 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 31/133 (23%), Positives = 53/133 (39%)
Query: 612 NEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFWEEIDVNHINSKAEFV--KV 669
N D L+I K + + ++ I + +N D N INSK +F K+
Sbjct: 370 NSLHDNLKILINNKKNNKNNNNNNNSGSIDINNNNNNNN--NNSDSNSINSKIDFDNNKI 427
Query: 670 IQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINK 729
++ L EG N I + + + V+++ + + N +KN I+TE +K
Sbjct: 428 NRNAL---EGDNNNNNNIIIGMSGLSLTKSVNLLDELANAKKNKNKNN-IITEDYSLDDK 483
Query: 730 LNTYGSVEKDVKT 742
N S T
Sbjct: 484 KNNNESTSTTTTT 496
Score = 46 (21.3 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 231 FTKVLKLKKYLMLFD---PNCSENSYFIVPTVSDS 262
F+K+L +KYL + D N NS+ ++P ++++
Sbjct: 657 FSKLL-CQKYLKVKDITNENNFNNSHLVIPNINEN 690
Score = 38 (18.4 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 237 LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHND 281
+ KY++ FD N F P DWK I+ ++ND
Sbjct: 767 ISKYIVFFD----SNGKFEKPN---------DWKLKKQINNNNND 798
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 119 (46.9 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 965 NPESKHLSDVLLDG--FDKFEESINYR-FKDKSYLLQAMTH--ASYFLNTLTDCYQRLEF 1019
N E + D L++ +D+ + +N F D++ L + H ++ N T+ +RLEF
Sbjct: 1047 NDELPIIEDNLINYKYYDQINQYLNSTDFNDQTNELVSNDHFYSNQNNNNNTNFSERLEF 1106
Query: 1020 LGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNN 1055
LGDA+LD+++ +L+ + G LT+ +S LVNN
Sbjct: 1107 LGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNN 1142
Score = 93 (37.8 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 40/147 (27%), Positives = 64/147 (43%)
Query: 729 KLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQPDLENHTGPSPKRLETIG 788
K NT V ++V T P + S E I S ++P ++++ +RLE +G
Sbjct: 884 KNNTNNQVLREVLTHPSTKVIS-ERKPIEKDQFQS-----YRPFMKDY-----QRLEFLG 932
Query: 789 DSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGESMIATKFEPRDN 848
DS LK +++L+ + N EG LS R N L +L ++ F + T D+
Sbjct: 933 DSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTELSRRIGFDYILRITTIG--DH 990
Query: 849 WLPPGYFVPKYLETALIEAGFPASL-W 874
P + ++ IE GF S W
Sbjct: 991 SKPHADLIEAFIGAIYIECGFKDSFDW 1017
Score = 48 (22.0 bits), Expect = 4.6e-07, Sum P(3) = 4.6e-07
Identities = 31/133 (23%), Positives = 53/133 (39%)
Query: 612 NEKEDTLQIQFKGKYSAEAICEGEEESALKIQDWIESNFFWEEIDVNHINSKAEFV--KV 669
N D L+I K + + ++ I + +N D N INSK +F K+
Sbjct: 370 NSLHDNLKILINNKKNNKNNNNNNNSGSIDINNNNNNNN--NNSDSNSINSKIDFDNNKI 427
Query: 670 IQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNASNPSKNTAILTEILENINK 729
++ L EG N I + + + V+++ + + N +KN I+TE +K
Sbjct: 428 NRNAL---EGDNNNNNNIIIGMSGLSLTKSVNLLDELANAKKNKNKNN-IITEDYSLDDK 483
Query: 730 LNTYGSVEKDVKT 742
N S T
Sbjct: 484 KNNNESTSTTTTT 496
Score = 46 (21.3 bits), Expect = 7.3e-07, Sum P(3) = 7.3e-07
Identities = 11/35 (31%), Positives = 22/35 (62%)
Query: 231 FTKVLKLKKYLMLFD---PNCSENSYFIVPTVSDS 262
F+K+L +KYL + D N NS+ ++P ++++
Sbjct: 657 FSKLL-CQKYLKVKDITNENNFNNSHLVIPNINEN 690
Score = 38 (18.4 bits), Expect = 4.6e-06, Sum P(3) = 4.6e-06
Identities = 13/45 (28%), Positives = 19/45 (42%)
Query: 237 LKKYLMLFDPNCSENSYFIVPTVSDSEQIVIDWKFMTLISEHHND 281
+ KY++ FD N F P DWK I+ ++ND
Sbjct: 767 ISKYIVFFD----SNGKFEKPN---------DWKLKKQINNNNND 798
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 138 (53.6 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 42/115 (36%), Positives = 60/115 (52%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
L++ P T+ + S VL +FEE+I F L +A T + N LT + Q
Sbjct: 1085 LQLQEPNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQ 1143
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
R+EFLGD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 1144 RMEFLGDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 1198
Score = 89 (36.4 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 21/64 (32%), Positives = 36/64 (56%)
Query: 768 DFQPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFK 827
D P NH +RLE +GD+ +++ ++ LY +P++ EG L+ R+ V N +L
Sbjct: 955 DPTPSRINHN----ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAM 1010
Query: 828 LGKQ 831
L K+
Sbjct: 1011 LAKK 1014
Score = 40 (19.1 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1083 QRFVKMQAENDFT-LNQEYYLMEGECDEAEDIE 1114
+RF++ + + + E E E DEAEDI+
Sbjct: 1340 KRFIERKYRQELKEMRWEREHQEREPDEAEDIK 1372
Score = 39 (18.8 bits), Expect = 5.1e-07, Sum P(4) = 5.1e-07
Identities = 10/25 (40%), Positives = 15/25 (60%)
Query: 358 NLEQPLLDVDHTSC-RLNFLTPRYV 381
NL+ PL + C R +F+ PR+V
Sbjct: 662 NLKGPLFEDSPPCCPRFHFM-PRFV 685
Score = 37 (18.1 bits), Expect = 7.9e-07, Sum P(4) = 7.9e-07
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 180 AILTTKYIPKVCSFPIFTRCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKK 239
A LT + KV F I +E E++ +N + L + +F D L LK
Sbjct: 609 APLTNIPLCKVIRFNIDYTIHFIE---EMMPENFCVKGLELFSLFLFRDILELYDWNLKG 665
Query: 240 YLMLFDPNCSENSYFI 255
L P C +F+
Sbjct: 666 PLFEDSPPCCPRFHFM 681
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 146 (56.5 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 48/168 (28%), Positives = 79/168 (47%)
Query: 901 LDCTVDMNVQSVVPYNLVTQHSIPDKSIADCVEALIGAYLIECGPRGAL-LFMSWLGLKV 959
LD + + ++ ++ + + P AD +EALIGA I+ G A L + W+ +
Sbjct: 1139 LDVSKRLGLEEILRFTTEEEFRKPQ---ADVIEALIGAVYIDRGFFEAYKLTVCWIFDE- 1194
Query: 960 IPPVTNP--ESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRL 1017
P P +K + F + I S L +A+ Y ++ + YQRL
Sbjct: 1195 -PDAEYPIYNTKFEETLAHQEIRAFLDGIGVHISHSSLLEEALCFP-YSFHSASKSYQRL 1252
Query: 1018 EFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRL 1065
E++GDA+LD+ ++ LY G LTD RS LV N +S++ +L
Sbjct: 1253 EYVGDAVLDFFVSDFLYATFPLAQEGQLTDYRSRLVRNSNLSSISRKL 1300
Score = 56 (24.8 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 27/137 (19%), Positives = 63/137 (45%)
Query: 656 DVNHINSKAEFVKVIQDKLTFYEGQLELIKNRIDVENTIKENQPVHIVRQSFDNA----- 710
D++++N F ++ +KL FY+ Q E+ +N+ + EN +ENQ ++N
Sbjct: 767 DIHNLN---HFKNML-NKLNFYKNQNEIQENQENQEN--QENQENQENEYEYENDYEYEY 820
Query: 711 SNPSKNTAILTEILENINKLNTYGSVEKDVKTEPKSPGKSCEHGIIRNTSTPSDFSFDFQ 770
N ++N EN N++ + + E ++ ++ E+ I +++ ++ +
Sbjct: 821 ENENENENENENENENENEIEIENENVNEYENEYENEYEN-ENEI--QIENENEYEYENE 877
Query: 771 PDLENHTGPSPKRLETI 787
+ EN K ++ +
Sbjct: 878 YEYENENEGKEKEIQDL 894
Score = 53 (23.7 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 11/38 (28%), Positives = 19/38 (50%)
Query: 1117 KALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
K LGD ES G ++D+ S + + Y+ + I+
Sbjct: 1317 KKLGDYLESFIGCCFVDTTQSFEYTKSLVYKYLDLRID 1354
Score = 52 (23.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 16/73 (21%), Positives = 37/73 (50%)
Query: 488 KDANDVIVDDTEVNDTKEDDSAVNEICTEIA-KVEIVDKKETVCDSGNEQENEDEEKLDK 546
K+ N++ + + + ++ NE E + E ++ E ++ NE ENE+E +++
Sbjct: 785 KNQNEIQENQENQENQENQENQENEYEYENDYEYEYENENENENENENENENENEIEIEN 844
Query: 547 --IKSDENKTESQ 557
+ EN+ E++
Sbjct: 845 ENVNEYENEYENE 857
Score = 52 (23.4 bits), Expect = 4.8e-06, Sum P(3) = 4.8e-06
Identities = 37/162 (22%), Positives = 64/162 (39%)
Query: 511 NEICTEIAKVEIVDKKETVCDSGNEQENEDEEKLDKIKSDENKTESQGV-EPWVEIGTWS 569
NEI E + +E ++ E EN+ E + + +EN+ E++ E +EI +
Sbjct: 788 NEIQENQENQENQENQENQ-ENEYEYENDYEYEYENENENENENENENENENEIEIENEN 846
Query: 570 -NEMAAGVECKPYPMTPPMFXXXXXXXXXXXXXXFDVEDDFRENEKEDTLQIQFKGKYSA 628
NE E Y + ++ E++ +E E +D L I K
Sbjct: 847 VNEYENEYE-NEYENENEIQIENENEYEYENEYEYENENEGKEKEIQDLLMIDLK----K 901
Query: 629 EAICEGEEESALK-IQDWIESNFFWEEIDVNHINSKAEFVKV 669
E I E E + I D +N + + D N+ N +K+
Sbjct: 902 ENIDSDESEHSFNYISDL--NNDYSDSYDDNNNNEFENNIKI 941
Score = 47 (21.6 bits), Expect = 1.2e-06, Sum P(4) = 1.2e-06
Identities = 17/71 (23%), Positives = 33/71 (46%)
Query: 488 KDANDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSG-NEQENEDEEKLDK 546
+D +D DD ND +DD+ ++ T + + ++ T +S + E D+ D
Sbjct: 409 RDDDDNYDDD---NDNDDDDNYDDDDSTTTTTTKALKRRGTDSNSNLTDYEIYDKSSDDI 465
Query: 547 IKSDENKTESQ 557
D++ ES+
Sbjct: 466 DNYDDSSKESE 476
Score = 41 (19.5 bits), Expect = 4.6e-06, Sum P(4) = 4.6e-06
Identities = 9/53 (16%), Positives = 28/53 (52%)
Query: 491 NDVIVDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQENEDEEK 543
N++I+ +ND+ +DD+ N I + + + +++ +Q+ + +++
Sbjct: 133 NEIII----INDSDDDDNNSNNIQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 181
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 227 MDYLFTKVLKLKKYLMLFD--PNCSENSYFIVPTVSD 261
+++L VLKL + LF P SE F+ T SD
Sbjct: 1097 LEFLGDSVLKLVSTIYLFFKYPKMSEG--FLSQTRSD 1131
Score = 38 (18.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 11/62 (17%), Positives = 27/62 (43%)
Query: 495 VDDTEVNDTKEDDSAVNEICTEIAKVEIVDKKETVCDSGNEQEN-EDEEKLDKIKSDENK 553
+ + ++ ++D +N + K+ + + ++ QEN E++E + EN
Sbjct: 756 LSEITMSQKRQDIHNLNHFKNMLNKLNFYKNQNEIQENQENQENQENQENQENEYEYEND 815
Query: 554 TE 555
E
Sbjct: 816 YE 817
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 115 (45.5 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/93 (31%), Positives = 49/93 (52%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ + + FK+K L++A+TH S Y+RLEFLGDA+L+ +I LY+
Sbjct: 4 EELQSLLGVYFKNKDLLVEALTHPSV---EKCPSYERLEFLGDAVLNLVIASMLYDLFPG 60
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
G L+ +SAL+ A LA ++ + +
Sbjct: 61 DPEGRLSHRQSALICKNTLAMLARQMNLGDYIR 93
Score = 97 (39.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 22/58 (37%), Positives = 31/58 (53%)
Query: 779 PSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
PS +RLE +GD+ L I LY +P EG+LSH +S + L L +Q G+
Sbjct: 33 PSYERLEFLGDAVLNLVIASMLYDLFPGDPEGRLSHRQSALICKNTLAMLARQMNLGD 90
Score = 70 (29.7 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 29/114 (25%), Positives = 57/114 (50%)
Query: 1119 LGDLFESVAGAIYLDSGMSLDTVW--KVYYEIMKSEIERLSVSV-PKSPIRELLE---LE 1172
L ++ E++ GAI+LD+G+ T + K +Y + ++ S+ PKS ++ELL+ ++
Sbjct: 110 LENVLEALVGAIFLDAGLETVTCFIKKRWYGLA---VQSDSIEPNPKSTLQELLQAKGMK 166
Query: 1173 PENARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKS 1226
P A + + V GK + G++ + + AA+ L+ LK+
Sbjct: 167 PPIYNVINRSGPAHLPIFEIEIRVDGK-KRRATGKSKKLGEENAARMMLEELKA 219
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 126 (49.4 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 31/90 (34%), Positives = 51/90 (56%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFL-NTLTDCYQRLEFLGDAILDYLITRHLYEDER 1038
+ + I Y FK+ L +A+TH S +TL Y+RLEFLGDA+L+ +I+ L+
Sbjct: 3 ESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIFP 62
Query: 1039 AHSPGTLTDLRSALV--NNIIFASLAVRLG 1066
+ G L ++ALV N ++ + ++ LG
Sbjct: 63 KDTEGNLAKKKTALVCGNKLVEVAQSINLG 92
Score = 57 (25.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 34/141 (24%), Positives = 62/141 (43%)
Query: 1095 TLNQEYYLMEGECDEA-EDIEVPKALGDLFESVAGAIYLDSGMSL--DTVWKVYYEIMKS 1151
++N ++M + + A I + L + E++ GAIYLD G + D ++ +++E +
Sbjct: 88 SINLGQFIMMSDGERACGGINNFRNLENALEALIGAIYLDGGFTAAQDFIY-LFWEHSAT 146
Query: 1152 EIERLSVSVPKSPIRELLELEPENARFSKP-----EKLADGRRVRVTVEVFGKGSYKGI- 1205
+ +VP + +L+ + R P +K TVEV SY+ I
Sbjct: 147 HM-----NVPPQDAKTILQELVQGKRLPAPAYHTIDKSGPDHNPTFTVEV-RIPSYQAIQ 200
Query: 1206 --GRNYCIAKCTAAKCALKHL 1224
G N +A+ AA L +
Sbjct: 201 ATGHNKKLAEQKAASLMLNQI 221
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 111 (44.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
+K + Y FK+ L A+TH S N + +RLEFLGD+IL ++I LY
Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRS--ANGKHN--ERLEFLGDSILSFVIADELYRRFPK 61
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPG 1077
+ G ++ +R+ LV A L + K L PG
Sbjct: 62 VNEGDMSRMRATLVRGNTLAELGREFDLGDYLK-LGPG 98
Score = 101 (40.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
G +RLE +GDS L + I LY +P V+EG +S +R+ V L +LG++ G+
Sbjct: 33 GKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGD 91
Score = 69 (29.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 40/142 (28%), Positives = 59/142 (41%)
Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
+F L L GE ++ L D E++ GAIYLDS L+T + E
Sbjct: 86 EFDLGDYLKLGPGEL-KSGGFRRDSILADAVEAIIGAIYLDS--DLETARSIVLEWYHGR 142
Query: 1153 IERL----SVSVPKSPIRELLE-----LEPENARFSKPEKLADGRRVRVTVEVFGKGS-Y 1202
+E + S PK+ ++E L+ L K E A + V EV G +
Sbjct: 143 LEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGE--AHNQEFTVACEVAGMDTPV 200
Query: 1203 KGIGRNYCIAKCTAAKCALKHL 1224
G G + A+ AA+ AL+ L
Sbjct: 201 IGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 111 (44.1 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 32/98 (32%), Positives = 47/98 (47%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
+K + Y FK+ L A+TH S N + +RLEFLGD+IL ++I LY
Sbjct: 6 NKLTSKLGYTFKETELLNLALTHRS--ANGKHN--ERLEFLGDSILSFVIADELYRRFPK 61
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPG 1077
+ G ++ +R+ LV A L + K L PG
Sbjct: 62 VNEGDMSRMRATLVRGNTLAELGREFDLGDYLK-LGPG 98
Score = 101 (40.6 bits), Expect = 7.5e-05, Sum P(2) = 7.5e-05
Identities = 22/59 (37%), Positives = 34/59 (57%)
Query: 778 GPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
G +RLE +GDS L + I LY +P V+EG +S +R+ V L +LG++ G+
Sbjct: 33 GKHNERLEFLGDSILSFVIADELYRRFPKVNEGDMSRMRATLVRGNTLAELGREFDLGD 91
Score = 69 (29.3 bits), Expect = 5.0e-06, Sum P(2) = 5.0e-06
Identities = 40/142 (28%), Positives = 59/142 (41%)
Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
+F L L GE ++ L D E++ GAIYLDS L+T + E
Sbjct: 86 EFDLGDYLKLGPGEL-KSGGFRRDSILADAVEAIIGAIYLDS--DLETARSIVLEWYHGR 142
Query: 1153 IERL----SVSVPKSPIRELLE-----LEPENARFSKPEKLADGRRVRVTVEVFGKGS-Y 1202
+E + S PK+ ++E L+ L K E A + V EV G +
Sbjct: 143 LEEIKPGASQKDPKTRLQEFLQGRRKPLPVYTVTNIKGE--AHNQEFTVACEVAGMDTPV 200
Query: 1203 KGIGRNYCIAKCTAAKCALKHL 1224
G G + A+ AA+ AL+ L
Sbjct: 201 IGKGTSRRKAEQAAAETALEQL 222
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 144 (55.7 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 37/115 (32%), Positives = 63/115 (54%)
Query: 957 LKVIPPVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-Q 1015
LK+ P+ + + ++ L D F + E+ I F + L +A T + N LT + Q
Sbjct: 790 LKIEDPLGDRDLSRITPALTD-FHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQ 848
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
RLE+LGD++L +I+ +LY + H G ++ LR++LV+N + + LGF F
Sbjct: 849 RLEWLGDSVLQLIISDYLYRNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEF 903
Score = 60 (26.2 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 16/47 (34%), Positives = 26/47 (55%)
Query: 782 KRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKL 828
+RLE +GD+ ++ + L+ + EG L+ R+ V N NL KL
Sbjct: 669 ERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKL 715
Score = 41 (19.5 bits), Expect = 7.8e-06, Sum P(3) = 7.8e-06
Identities = 7/17 (41%), Positives = 12/17 (70%)
Query: 112 EIETYPDSTKRRQFYHK 128
++E PDS +R++ HK
Sbjct: 185 DVEEEPDSCRRKKRTHK 201
>RGD|1307626 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0003674 "molecular_function" evidence=ND]
[GO:0004521 "endoribonuclease activity" evidence=ISO] [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010586 "miRNA metabolic process" evidence=ISO]
[GO:0031054 "pre-miRNA processing" evidence=ISO] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1307626 Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207
HOGENOM:HOG000122291 HOVERGEN:HBG023130 OrthoDB:EOG4VQ9NG
UniGene:Rn.41113 IPI:IPI00870720 EMBL:AY373464
ProteinModelPortal:Q67B98 STRING:Q67B98 PRIDE:Q67B98
InParanoid:Q67B98 ArrayExpress:Q67B98 Genevestigator:Q67B98
Uniprot:Q67B98
Length = 288
Score = 136 (52.9 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 41/110 (37%), Positives = 57/110 (51%)
Query: 962 PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFL 1020
P T+ + S VL +FEE+I F L +A T + N LT + QR+EFL
Sbjct: 5 PNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFL 63
Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
GD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 64 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 113
Score = 41 (19.5 bits), Expect = 1.8e-05, Sum P(2) = 1.8e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1083 QRFVKMQAENDFT-LNQEYYLMEGECDEAEDIE 1114
+RF++ + + + E E E DEAEDI+
Sbjct: 255 KRFIEREYRQELKEMRWEREHQEREPDEAEDIK 287
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 131 (51.2 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 39/91 (42%), Positives = 50/91 (54%)
Query: 983 EESINYRFKDKSYLLQAMTHASYFLN-----TLTDCYQRLEFLGDAILDYLITRHLYEDE 1037
E SI YRF D+ +L +A+TH S+ LN T+ D +RLEF GDAIL + I + L
Sbjct: 20 ETSIGYRFTDRRFLDEALTHRSW-LNEVRSPTVPD-NERLEFFGDAILGFCIGKMLLRHY 77
Query: 1038 RAHSPGTLTDLRSALVNNIIFASLA--VRLG 1066
G L ++SALV A LA V LG
Sbjct: 78 PESREGALARMKSALVGEETLADLAAAVELG 108
>UNIPROTKB|F1M2R2 [details] [associations]
symbol:F1M2R2 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
IPI:IPI00951546 Ensembl:ENSRNOT00000066555 ArrayExpress:F1M2R2
Uniprot:F1M2R2
Length = 287
Score = 136 (52.9 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 41/110 (37%), Positives = 57/110 (51%)
Query: 962 PVTNPESKHLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCY-QRLEFL 1020
P T+ + S VL +FEE+I F L +A T + N LT + QR+EFL
Sbjct: 4 PNTDRQLIETSPVL-QKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFL 62
Query: 1021 GDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHF 1070
GD+I+ + T +L+ H G LT LRS+LVNN A +A LG +
Sbjct: 63 GDSIMQLVATEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEY 112
Score = 40 (19.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 11/33 (33%), Positives = 18/33 (54%)
Query: 1083 QRFVKMQAENDFT-LNQEYYLMEGECDEAEDIE 1114
+RF++ + + + E E E DEAEDI+
Sbjct: 254 KRFIERKYRQELKEMRWEREHQEREPDEAEDIK 286
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 129 (50.5 bits), Expect = 4.4e-05, P = 4.4e-05
Identities = 30/82 (36%), Positives = 45/82 (54%)
Query: 981 KFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAH 1040
+ + + Y F + L+QA+TH S +RLEFLGD+IL ++I LY+ H
Sbjct: 10 RLTKKLGYEFNEPLLLVQALTHRS----AKGAHNERLEFLGDSILGFVIAEALYDKFPKH 65
Query: 1041 SPGTLTDLRSALVNNIIFASLA 1062
G LT +RS+LV + A +A
Sbjct: 66 DEGDLTRMRSSLVKGVTLAEVA 87
>TIGR_CMR|SPO_3198 [details] [associations]
symbol:SPO_3198 "ribonuclease III" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR
TIGRFAMs:TIGR02191 RefSeq:YP_168401.1 ProteinModelPortal:Q5LNK5
GeneID:3195258 KEGG:sil:SPO3198 PATRIC:23379843
ProtClustDB:CLSK934087 Uniprot:Q5LNK5
Length = 225
Score = 111 (44.1 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 29/81 (35%), Positives = 43/81 (53%)
Query: 982 FEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERAHS 1041
FE + Y F+ L++A+TH S +T D QRLEFLGD +L ++ L E ++ +
Sbjct: 10 FEARLGYSFERPELLVRALTHGSISSSTRQD-NQRLEFLGDRVLGLVMATALLEADKDAT 68
Query: 1042 PGTLTDLRSALVNNIIFASLA 1062
G L +ALV A +A
Sbjct: 69 EGQLAPRFNALVRKETCAEVA 89
Score = 59 (25.8 bits), Expect = 5.2e-05, Sum P(2) = 5.2e-05
Identities = 26/90 (28%), Positives = 46/90 (51%)
Query: 1119 LGDLFESVAGAIYLDSGMSL-DTV----WKV-YYEI------MKSEIERLSVSVPKSPIR 1166
LGD E+V A+Y D G + + V W +++ K+ ++ + + ++P R
Sbjct: 116 LGDAMEAVIAAVYRDGGFAAAEAVILRLWGARVHQVEADARDAKTALQEWAQARGQTPPR 175
Query: 1167 -ELLELE-PENAR-FSKPEKLADGRRVRVT 1193
EL++ P++A F+ +LADGRR T
Sbjct: 176 YELVKRSGPDHAPVFTILAELADGRRAEAT 205
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 126 (49.4 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 33/93 (35%), Positives = 48/93 (51%)
Query: 983 EESINYRFKDKSYLLQAMTHASYFLNTLTDCYQ---RLEFLGDAILDYLITRHLYEDERA 1039
E+ + + F + S LL A+TH SY + + RLEFLGDA+L+ I+ +L+
Sbjct: 10 EKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLFRTFPQ 69
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFK 1072
S G LT LRS LV LA ++ F +
Sbjct: 70 KSEGDLTKLRSRLVCAESLYELAFKINLDKFLR 102
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 31/98 (31%), Positives = 46/98 (46%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ + + Y F + L QA+TH S + +RLEFLGD+IL Y+I LY
Sbjct: 7 NRLQRKLGYTFNHQELLQQALTHRS----ASSKHNERLEFLGDSILSYVIANALYHRFPR 62
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPG 1077
G ++ +R+ LV A LA + L PG
Sbjct: 63 VDEGDMSRMRATLVRGNTLAELAREFELGECLR-LGPG 99
Score = 105 (42.0 bits), Expect = 0.00087, Sum P(2) = 0.00087
Identities = 29/90 (32%), Positives = 43/90 (47%)
Query: 755 IIRNTSTPSDFSFDFQPDLEN---HTGPSPK---RLETIGDSFLKYAITIFLYCTYPNVH 808
+I ++F+ Q L+ H S K RLE +GDS L Y I LY +P V
Sbjct: 5 VINRLQRKLGYTFNHQELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVD 64
Query: 809 EGKLSHLRSKQVSNYNLFKLGKQKVFGESM 838
EG +S +R+ V L +L ++ GE +
Sbjct: 65 EGDMSRMRATLVRGNTLAELAREFELGECL 94
Score = 54 (24.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 20/82 (24%), Positives = 39/82 (47%)
Query: 1093 DFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSE 1152
+F L + L GE ++ L D E++ G ++LDS + TV K+ ++
Sbjct: 87 EFELGECLRLGPGEL-KSGGFRRESILADTVEALIGGVFLDS--DIQTVEKLILNWYQTR 143
Query: 1153 IERLSVSV----PKSPIRELLE 1170
++ +S PK+ ++E L+
Sbjct: 144 LDEISPGDKQKDPKTRLQEYLQ 165
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 119 (46.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 34/96 (35%), Positives = 50/96 (52%)
Query: 973 DVLLDGFDKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRH 1032
D +L +K + YRF+D L A+TH S Y+RLEFLGDA+L +++
Sbjct: 7 DSILALTEKVFKISGYRFQDHELLKTAVTHPSIAAERYAS-YERLEFLGDAVLGLVVSEM 65
Query: 1033 LYEDERAHSPGTLTDLRSALV--NNIIFASLAVRLG 1066
LY S G LT R ALV + ++ + ++ LG
Sbjct: 66 LYTLFPDDSEGLLTKKRIALVRGSKVVEIAQSLNLG 101
Score = 44 (20.5 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 8/18 (44%), Positives = 13/18 (72%)
Query: 1119 LGDLFESVAGAIYLDSGM 1136
L + E++ GAIY+D G+
Sbjct: 122 LENALEALIGAIYVDGGL 139
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.406 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1233 1206 0.00097 123 3 11 22 0.41 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 61
No. of states in DFA: 635 (67 KB)
Total size of DFA: 581 KB (2260 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:02
No. of threads or processors used: 24
Search cpu time: 120.59u 0.10s 120.69t Elapsed: 00:01:31
Total cpu time: 120.62u 0.10s 120.72t Elapsed: 00:01:33
Start: Thu Aug 15 13:07:54 2013 End: Thu Aug 15 13:09:27 2013