RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy15484
(1233 letters)
>d2nuga1 a.149.1.1 (A:3-150) RNase III endonuclease catalytic domain
{Aquifex aeolicus [TaxId: 63363]}
Length = 148
Score = 84.1 bits (207), Expect = 2e-19
Identities = 47/175 (26%), Positives = 82/175 (46%), Gaps = 39/175 (22%)
Query: 980 DKFEESINYRFKDKSYLLQAMTHASYFLNTLTDCYQRLEFLGDAILDYLITRHLYEDERA 1039
++ E+ + Y FKDKS L +A+TH SY + + Y+ LEFLGDA++++ I L +
Sbjct: 3 EQLEKKLGYTFKDKSLLEKALTHVSY---SKKEHYETLEFLGDALVNFFIVDLLVQYSPN 59
Query: 1040 HSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQRFVKMQAENDFTLNQE 1099
G L+ L++ L++ F LA +L H F + ++E I
Sbjct: 60 KREGFLSPLKAYLISEEFFNLLAQKLELHKFIRIKRGKINETII---------------- 103
Query: 1100 YYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWKVYYEIMKSEIE 1154
GD+FE++ A+Y+DSG + +++Y++ K +I
Sbjct: 104 --------------------GDVFEALWAAVYIDSGRDANFTRELFYKLFKEDIL 138
>d1o0wa1 a.149.1.1 (A:-1-167) RNase III endonuclease catalytic domain
{Thermotoga maritima [TaxId: 2336]}
Length = 169
Score = 80.7 bits (198), Expect = 4e-18
Identities = 37/194 (19%), Positives = 77/194 (39%), Gaps = 38/194 (19%)
Query: 970 HLSDVLLDGFDKFEESINYRFKDKSYLLQAMTHASY------FLNTLTDCYQRLEFLGDA 1023
H+++ ++F++ FK++ L +A+ H+SY + ++LEFLGDA
Sbjct: 2 HMNESERKIVEEFQKETGINFKNEELLFRALCHSSYANEQNQAGRKDVESNEKLEFLGDA 61
Query: 1024 ILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLSPGLHEVIQ 1083
+L+ + LY+ G L ++SA + + A ++ ++ F +
Sbjct: 62 VLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVSRKMNLGKFLFLGKGEEKTGGR 121
Query: 1084 RFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSGMSLDTVWK 1143
+ A D FE++ AIYLD G + + +
Sbjct: 122 DRDSILA------------------------------DAFEALLAAIYLDQG--YEKIKE 149
Query: 1144 VYYEIMKSEIERLS 1157
++ + + IE++
Sbjct: 150 LFEQEFEFYIEKIM 163
Score = 31.4 bits (70), Expect = 0.33
Identities = 26/129 (20%), Positives = 51/129 (39%), Gaps = 8/129 (6%)
Query: 770 QPDLENHTGPSPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLG 829
Q S ++LE +GD+ L+ + LY YP G L+ ++S S L +
Sbjct: 41 QNQAGRKDVESNEKLEFLGDAVLELFVCEILYKKYPEAEVGDLARVKSAAASEEVLAMVS 100
Query: 830 KQKVFGESMIATKFEPRDNWLPPGYFVPKYLETALIEA-----GFPAS--LWNCLSLPNL 882
++ G+ + K E + + E AL+ A G+ L+ +
Sbjct: 101 RKMNLGKFLFLGKGEEKTGGRDRDSILADAFE-ALLAAIYLDQGYEKIKELFEQEFEFYI 159
Query: 883 KELSPEKVL 891
+++ ++L
Sbjct: 160 EKIMKGEML 168
>d1u61a_ a.149.1.1 (A:) Hypothetical protein BC0111 {Bacillus cereus
[TaxId: 1396]}
Length = 127
Score = 65.4 bits (159), Expect = 3e-13
Identities = 22/121 (18%), Positives = 36/121 (29%), Gaps = 19/121 (15%)
Query: 1016 RLEFLGDAILDYLITRHLYEDERAHSPGTLTDLRSALVNNIIFASLAVRLGFHHFFKHLS 1075
L ++GDA+ + I HL + + P L L ++ V+ A + L F
Sbjct: 10 ALAYMGDAVYEQYIRYHLLQKGKV-RPNQLHRLGTSFVSAKAQAKVVYHLLETAFL-TEE 67
Query: 1076 PGLHEVIQRFVKMQAENDFTLNQEYYLMEGECDEAEDIEVPKALGDLFESVAGAIYLDSG 1135
R T Q Y FE++ G +L +
Sbjct: 68 EEAVLRRGRNANSGTVPKNTDVQTY-----------------RHSTAFEALIGYHHLLNN 110
Query: 1136 M 1136
Sbjct: 111 R 111
Score = 38.4 bits (89), Expect = 8e-04
Identities = 11/57 (19%), Positives = 19/57 (33%), Gaps = 1/57 (1%)
Query: 780 SPKRLETIGDSFLKYAITIFLYCTYPNVHEGKLSHLRSKQVSNYNLFKLGKQKVFGE 836
+ L +GD+ + I L V +L L + VS K+ +
Sbjct: 7 NSLALAYMGDAVYEQYIRYHLLQKGK-VRPNQLHRLGTSFVSAKAQAKVVYHLLETA 62
Score = 29.2 bits (65), Expect = 1.5
Identities = 5/36 (13%), Positives = 10/36 (27%)
Query: 920 QHSIPDKSIADCVEALIGAYLIECGPRGALLFMSWL 955
+ + EALIG + + +
Sbjct: 86 NTDVQTYRHSTAFEALIGYHHLLNNRERLDEIVYKA 121
>d1si2a_ b.34.14.1 (A:) Eukaryotic translation initiation factor 2C
1, EIF2C1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 126
Score = 39.1 bits (91), Expect = 5e-04
Identities = 23/109 (21%), Positives = 41/109 (37%), Gaps = 12/109 (11%)
Query: 264 QIVIDWKFMTLISEHHN--DVIQDIPEKERENFVFDESKFRDAVVMPWYRNQFEPTYFYV 321
Q VI+ FM + + N + + + + +R F + + V + Q + Y V
Sbjct: 3 QPVIE--FMCEVLDIRNIDEQPKPLTDSQRVRF---TKEIKGLKVEVTHCGQMKRKY-RV 56
Query: 322 AEIMTNVHPRSMFPSR----TNTYQTFEEYYSLKYGLQIQNLEQPLLDV 366
+ FP + T +Y+ KY LQ++ P L V
Sbjct: 57 CNVTRRPASHQTFPLQLESGQTVECTVAQYFKQKYNLQLKYPHLPCLQV 105
>d1u04a1 b.34.14.1 (A:2-323) Argonaute homologue PF0537 {Pyrococcus
furiosus [TaxId: 2261]}
Length = 322
Score = 35.9 bits (83), Expect = 0.026
Identities = 37/302 (12%), Positives = 84/302 (27%), Gaps = 88/302 (29%)
Query: 146 YLYAVKMKLTCPIPDEQNKRGR----KIHPPEN----SPQGLAILTTKYIPKVCSFPIFT 197
Y+Y + P+E+ ++ ++ P+ L I TTK +
Sbjct: 21 YVYRLFND-----PEEELQKEGYSIYRLAYENVGIVIDPENLIIATTKELEYE------- 68
Query: 198 RCGEVEVSIELIDKNVVLSEENLSNTLIFMDYLFTKVLKLKKYLML----FDPNCSENSY 253
GE E+ + ++ + + L + + L P + Y
Sbjct: 69 --GEFIPEGEISFSELRNDYQSK----LVLRLLKENGIGEYELSKLLRKFRKPKTFGD-Y 121
Query: 254 FIVP----TVSDSEQ---IVID-----------WKFMTLISEHHNDVIQDIPEKERENFV 295
++P +V ++ +VI W+ + + + + E +
Sbjct: 122 KVIPSVEMSVIKHDEDFYLVIHIIHQIQSMKTLWELVNKDPKELEEFLMTHKENLMLKDI 181
Query: 296 FDESKFRDAVVMPWYRNQFEPTYFYVAEIMTNVHPRSMFPSRTNTYQT---FEEYYSLKY 352
K Y + + V + T E+Y
Sbjct: 182 ASPLKTVYKPCFEEYTKKP-----KLDHNQEIVKY-WYNYHIERYWNTPEAKLEFYRKFG 235
Query: 353 GLQIQNLEQPLLDVDHTSCRLNFLTPRYVNRKGINLATTSEETRREIRESLGKKQLLVPE 412
+ +L+QP + + + +I+++ K L+P+
Sbjct: 236 QV---DLKQPAI----------------LAKF-----------ASKIKKNKNYKIYLLPQ 265
Query: 413 LC 414
L
Sbjct: 266 LV 267
>d1uila_ d.50.1.1 (A:) ATP-dependent RNA helicase A, Dhx9 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 113
Score = 31.9 bits (72), Expect = 0.11
Identities = 16/86 (18%), Positives = 34/86 (39%), Gaps = 6/86 (6%)
Query: 1 MDNAIFIVNRYCARLPSDIFTRLAPIITISEIKEDDSIMFTCSIRLPINSPLKRSVTGHK 60
++NA +N+Y + ++ +++ D + F + + I +R
Sbjct: 25 LENAKARLNQYFQK------EKIQGEYKYTQVGPDHNRSFIAEMTIYIKQLGRRIFAREH 78
Query: 61 MPTKLLAWRIAAMEACRVLYELKELD 86
K LA + A+ R LY L ++
Sbjct: 79 GSNKKLAAQSCALSLVRQLYHLGVIE 104
>d1itwa_ c.77.1.2 (A:) Monomeric isocitrate dehydrogenase
{Azotobacter vinelandii [TaxId: 354]}
Length = 740
Score = 31.3 bits (71), Expect = 0.85
Identities = 26/107 (24%), Positives = 36/107 (33%), Gaps = 7/107 (6%)
Query: 535 EQENEDEEKLDKIKSDENKTESQGVEPWVEIGTWSNEMAAGVECKPYPMTPPMFSDDEDS 594
E+ D EK +K+ +K + V P + G V K Y P S
Sbjct: 111 EEPKTDTEK--DVKARYDKIKGSAVNPVLREGNSDRRAPLSV--KNYARKHP-HKMGAWS 165
Query: 595 NDDLSSVDFDVEDDFRENEKEDTLQIQFKGKYSAEAICEGEEESALK 641
D S V DF +EK + G E I + + LK
Sbjct: 166 ADSKSHVAHMDNGDFYGSEKAALIGA--PGSVKIELIAKDGSSTVLK 210
>d1qu6a2 d.50.1.1 (A:91-179) dsRNA-dependent protein kinase pkr {Human
(Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 28.3 bits (62), Expect = 1.5
Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 1/80 (1%)
Query: 1150 KSEIERLSVSVPKSPIRELLELEPEN-ARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRN 1208
+ E LS+ I + + + + ++ K G G
Sbjct: 5 TNSSEGLSMGNYIGLINRIAQKKRLTVNYEQCASGVHGPEGFHYKCKMGQKEYSIGTGST 64
Query: 1209 YCIAKCTAAKCALKHLKSAK 1228
AK AAK A + S +
Sbjct: 65 KQEAKQLAAKLAYLQILSEE 84
>d1x48a1 d.50.1.1 (A:8-83) dsRNA-dependent protein kinase pkr {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 76
Score = 26.9 bits (59), Expect = 3.6
Identities = 11/43 (25%), Positives = 16/43 (37%)
Query: 1188 RRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKCALKHLKSAKPA 1230
+R ++ G G AK AAK A + L + P
Sbjct: 29 QRFICKCKIGQTMYGTGSGVTKQEAKQLAAKEAYQKLLKSPPK 71
>d2b7ta1 d.50.1.1 (A:1-73) dsRNA-specific editase 1 {Rat (Rattus
norvegicus) [TaxId: 10116]}
Length = 73
Score = 26.4 bits (58), Expect = 4.9
Identities = 17/66 (25%), Positives = 29/66 (43%), Gaps = 2/66 (3%)
Query: 1161 PKSPIRELLELEPE-NARFSKPEKLADGRRVRVTVEVFGKGSYKGIGRNYCIAKCTAAKC 1219
PK+ + +L E++P ++VEV G+ ++G G AK AA+
Sbjct: 6 PKNALMQLNEIKPGLQYMLLSQTGPVHAPLFVMSVEVNGQ-VFEGSGPTKKKAKLHAAEK 64
Query: 1220 ALKHLK 1225
AL+
Sbjct: 65 ALRSFV 70
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.318 0.135 0.402
Gapped
Lambda K H
0.267 0.0578 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 4,707,243
Number of extensions: 231455
Number of successful extensions: 570
Number of sequences better than 10.0: 1
Number of HSP's gapped: 567
Number of HSP's successfully gapped: 20
Length of query: 1233
Length of database: 2,407,596
Length adjustment: 96
Effective length of query: 1137
Effective length of database: 1,089,516
Effective search space: 1238779692
Effective search space used: 1238779692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.5 bits)