Query psy15494
Match_columns 149
No_of_seqs 162 out of 1042
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 22:39:23 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15494.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15494hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4564|consensus 100.0 4.4E-31 9.5E-36 226.8 11.0 122 2-125 298-421 (473)
2 KOG4193|consensus 100.0 5E-28 1.1E-32 214.2 12.0 128 2-131 461-589 (610)
3 PF00002 7tm_2: 7 transmembran 99.8 7.8E-20 1.7E-24 143.9 0.0 99 2-102 142-242 (242)
4 KOG4289|consensus 99.7 8.9E-17 1.9E-21 149.6 7.3 111 2-118 2288-2399(2531)
5 PF05462 Dicty_CAR: Slime mold 98.0 5E-05 1.1E-09 63.0 9.4 116 2-121 145-268 (303)
6 PF10320 7TM_GPCR_Srsx: Serpen 95.7 0.028 6.1E-07 45.1 5.9 69 50-121 180-257 (257)
7 PHA03087 G protein-coupled che 94.1 0.91 2E-05 37.0 10.8 82 52-133 239-333 (335)
8 PF02101 Ocular_alb: Ocular al 93.3 0.31 6.7E-06 41.9 6.7 94 13-106 197-310 (405)
9 PF10328 7TM_GPCR_Srx: Serpent 89.8 1 2.2E-05 36.0 6.0 27 90-120 246-272 (274)
10 PHA02834 chemokine receptor-li 82.8 1.7 3.6E-05 35.7 3.8 29 99-127 285-313 (323)
11 PHA03234 DNA packaging protein 81.9 9.2 0.0002 31.8 7.9 67 52-125 232-318 (338)
12 PF10324 7TM_GPCR_Srw: Serpent 81.8 12 0.00026 30.2 8.4 33 90-122 284-316 (318)
13 PHA03235 DNA packaging protein 79.3 18 0.00038 31.1 9.0 30 94-123 294-323 (409)
14 PF10321 7TM_GPCR_Srt: Serpent 77.9 17 0.00037 30.3 8.2 34 92-125 276-309 (313)
15 PF05296 TAS2R: Mammalian tast 76.9 40 0.00087 27.7 10.3 102 16-123 191-301 (303)
16 KOG4219|consensus 67.7 32 0.0007 30.0 7.6 73 52-124 256-336 (423)
17 PF10292 7TM_GPCR_Srab: Serpen 66.3 72 0.0016 26.2 9.4 71 2-73 170-246 (324)
18 PF10318 7TM_GPCR_Srh: Serpent 66.0 31 0.00068 27.7 7.1 38 85-122 264-301 (302)
19 PHA02638 CC chemokine receptor 64.4 61 0.0013 27.8 8.9 23 103-125 377-399 (417)
20 PF10323 7TM_GPCR_Srv: Serpent 52.8 1.2E+02 0.0026 24.5 8.3 14 108-121 268-281 (283)
21 PF11970 Git3_C: G protein-cou 40.1 73 0.0016 21.0 4.3 62 49-110 4-71 (76)
22 PF00001 7tm_1: 7 transmembran 35.6 30 0.00065 25.5 2.1 59 13-72 156-217 (257)
23 PF01534 Frizzled: Frizzled/Sm 30.3 84 0.0018 26.4 4.2 37 2-38 168-207 (328)
24 PF12588 PSDC: Phophatidylseri 29.6 62 0.0013 24.0 2.9 31 108-138 93-125 (141)
25 KOG3722|consensus 25.2 2.3E+02 0.0049 25.2 5.9 22 13-34 390-411 (538)
26 PRK05759 F0F1 ATP synthase sub 24.4 1.1E+02 0.0024 22.2 3.5 21 17-37 5-25 (156)
27 PF06781 UPF0233: Uncharacteri 22.8 81 0.0018 21.5 2.3 27 53-79 30-56 (87)
28 PF10160 Tmemb_40: Predicted m 22.4 4.4E+02 0.0096 21.7 9.7 96 21-121 16-118 (261)
29 CHL00019 atpF ATP synthase CF0 22.4 1.1E+02 0.0024 23.1 3.3 26 13-38 21-46 (184)
30 KOG2302|consensus 22.4 5.7E+02 0.012 25.8 8.3 31 89-119 1372-1402(1956)
31 PF00430 ATP-synt_B: ATP synth 20.9 1.2E+02 0.0026 21.0 3.0 20 19-38 2-21 (132)
32 PF12399 BCA_ABC_TP_C: Branche 20.4 66 0.0014 16.4 1.1 10 108-117 12-21 (23)
No 1
>KOG4564|consensus
Probab=99.97 E-value=4.4e-31 Score=226.85 Aligned_cols=122 Identities=39% Similarity=0.777 Sum_probs=112.1
Q ss_pred ccccccC--CceEEEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHhhhhhhhhhcccccCC
Q psy15494 2 DCWMNDA--HSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEP 79 (149)
Q Consensus 2 ~CWl~~~--~~iw~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~~~~~~~~~k~~~~L~pLLGltW~~g~~~~~~ 79 (149)
.||..++ +..|++.||+++.+++|+++|++|+|+|++|+|++++.++ +++||++|++++|+||||++.++..+.+++
T Consensus 298 ~CW~~~~~~~~~WIi~gPi~~ai~vNf~flinIvrILv~KLr~~~~~~~-~~y~K~vKaTLvLIPLfGI~~ilf~~~P~~ 376 (473)
T KOG4564|consen 298 GCWDSNDTGHIWWIIRGPILLAILVNFIFLINIVRILVTKLRASNASET-DQYRKLVKATLVLIPLFGIHYILFAFRPDE 376 (473)
T ss_pred cccccCCCcceEEEEeccHHHHHHHHHHHHHHHHHHHHHHhcCccccch-HHHHHHHHHHHHHHHHcCCeeEEEEecCch
Confidence 5999875 4679999999999999999999999999999999876554 568999999999999999999999999876
Q ss_pred CCCchHHHHHHHHHHhhcchhhhhhhhhhcChHHHHHHHHHHHHhh
Q psy15494 80 KSPWEMVYDVFSAVLVSSQGLCVSILFCFANVDVHGAFRKMFYRLQ 125 (149)
Q Consensus 80 ~~~~~~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~r~~ 125 (149)
+ ....++.|.-.+|+|+|||||+++|||+|+|||+|+||.|+||+
T Consensus 377 ~-~~~~v~~~~~~~L~SfQGf~VAvlYCFlN~EVq~elrr~W~r~~ 421 (473)
T KOG4564|consen 377 D-TLREVYLYFELFLGSFQGFFVAVLYCFLNGEVQAELRRKWSRWR 421 (473)
T ss_pred H-HHHHHHHHHHHHHHhccchheehheeecCHHHHHHHHHHHHhcC
Confidence 4 45688999999999999999999999999999999999999998
No 2
>KOG4193|consensus
Probab=99.95 E-value=5e-28 Score=214.24 Aligned_cols=128 Identities=26% Similarity=0.409 Sum_probs=107.2
Q ss_pred ccccccC-CceEEEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHhhhhhhhhhcccccCCC
Q psy15494 2 DCWMNDA-HSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPK 80 (149)
Q Consensus 2 ~CWl~~~-~~iw~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~~~~~~~~~k~~~~L~pLLGltW~~g~~~~~~~ 80 (149)
+||++.+ .++|+|.||+++++++|+++|+.+++++.++++..+...++.+-.+..|.++.|+++||+||+||++...++
T Consensus 461 ~CWl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi~s~~~~ 540 (610)
T KOG4193|consen 461 VCWLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGIFSWLPG 540 (610)
T ss_pred ceEEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 4999975 689999999999999999999999999988766544433333333679999999999999999999887653
Q ss_pred CCchHHHHHHHHHHhhcchhhhhhhhhhcChHHHHHHHHHHHHhhcCCCCc
Q psy15494 81 SPWEMVYDVFSAVLVSSQGLCVSILFCFANVDVHGAFRKMFYRLQRRGTHS 131 (149)
Q Consensus 81 ~~~~~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~r~~~~~~~~ 131 (149)
...+++|+|+|+|++||+|||++||++++++|++++|+.+..+++.+.+
T Consensus 541 --~~~v~~YlFti~NalQG~fIFi~~cll~~kvr~~~~k~~~~~~~~~~~~ 589 (610)
T KOG4193|consen 541 --TSVVFAYLFTIFNALQGVFIFIFHCLLRKKVRKEYRKWLCCGRGDSSAS 589 (610)
T ss_pred --cchHHHHHHHHHHHhhhhHhhHhhhhhhHHHHHHHHHHhcccCCCCCCC
Confidence 4789999999999999999999999999999999999887555444333
No 3
>PF00002 7tm_2: 7 transmembrane receptor (Secretin family); InterPro: IPR000832 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. ; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 3L2J_A 1BL1_A.
Probab=99.76 E-value=7.8e-20 Score=143.92 Aligned_cols=99 Identities=31% Similarity=0.553 Sum_probs=0.0
Q ss_pred ccccccC-CceEEEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhH-HHHHHHHHHHhhhhhhhhhcccccCC
Q psy15494 2 DCWMNDA-HSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIR-KAARAALILVPLFGLHHILLPFRPEP 79 (149)
Q Consensus 2 ~CWl~~~-~~iw~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~~~~~~-~~~k~~~~L~pLLGltW~~g~~~~~~ 79 (149)
.||++++ +..|+|.+|+++++++|+++++.+++++.++.+++++. ++++.+ +.+|+.+.|+|++|++|+++++...+
T Consensus 142 ~CWl~~~~~~~~~f~~P~~~~l~in~vi~~~v~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~L~~llg~~w~~~~~~~~~ 220 (242)
T PF00002_consen 142 NCWLSNDWGFIWAFVGPVLIILLINIVIFILVLRVLVRKSRSSDKS-EKKKRRKKILRASLILLPLLGITWLFGILAVSD 220 (242)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccCCCceEEEEEecccceecccchhheeeEEeehhhhhhhhhh-hccchhhhHHHHHHHHHHHHHHHheeeeeeecc
Confidence 5999976 67899999999999999999999999988766643332 233444 48999999999999999999987654
Q ss_pred CCCchHHHHHHHHHHhhcchhhh
Q psy15494 80 KSPWEMVYDVFSAVLVSSQGLCV 102 (149)
Q Consensus 80 ~~~~~~~~~ylF~ilnslQG~fI 102 (149)
+ ..+.+++|+|+++||+||++|
T Consensus 221 ~-~~~~~~~~lf~i~nslQG~~I 242 (242)
T PF00002_consen 221 S-VDSLVFQYLFAILNSLQGFFI 242 (242)
T ss_dssp -----------------------
T ss_pred c-chHHHHHHHHHHHHcCcceeC
Confidence 2 246889999999999999986
No 4
>KOG4289|consensus
Probab=99.67 E-value=8.9e-17 Score=149.60 Aligned_cols=111 Identities=22% Similarity=0.352 Sum_probs=95.2
Q ss_pred cccccc-CCceEEEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCchhhHHHHHHHHHHHhhhhhhhhhcccccCCC
Q psy15494 2 DCWMND-AHSRWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPK 80 (149)
Q Consensus 2 ~CWl~~-~~~iw~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~~~~~~~~~k~~~~L~pLLGltW~~g~~~~~~~ 80 (149)
+|||+. +..+|+|.|||++++++|+..++...|+.+.|+... ..++..-+.++..+.++.++|.||++|+++...
T Consensus 2288 fCwlS~h~~LiWsfagPigl~i~ms~~~~~lsa~vSc~~k~~~---f~kK~~v~~lq~~fl~llllsatwl~~ll~vn~- 2363 (2531)
T KOG4289|consen 2288 FCWLSPHDTLIWSFAGPIGLVILMSFYAAALSARVSCHKKYQV---FVKKGNVSVLQHSFLLLLLLSATWLLGLLAVNP- 2363 (2531)
T ss_pred eeecccchheeeeecccceeeehHHHHHHHHHHHHhhhhhhee---eeeccchhhhHHHHHHHHHHHHHHHHHHHhcCC-
Confidence 699995 678999999999999999999999988877665432 222233457899999999999999999998753
Q ss_pred CCchHHHHHHHHHHhhcchhhhhhhhhhcChHHHHHHH
Q psy15494 81 SPWEMVYDVFSAVLVSSQGLCVSILFCFANVDVHGAFR 118 (149)
Q Consensus 81 ~~~~~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~ 118 (149)
....|+|+|++++.+||.|++++||++|.|||++++
T Consensus 2364 --~~l~fhyl~a~~~~lqg~~Vlll~cVl~~~~raa~~ 2399 (2531)
T KOG4289|consen 2364 --DPLEFHYLFASIIGLQGPFVLLLWCVLNIEVRAALK 2399 (2531)
T ss_pred --chHHHHHHHHHHHHhhhHHHHHHHhhhcHHHHHhhc
Confidence 368899999999999999999999999999999988
No 5
>PF05462 Dicty_CAR: Slime mold cyclic AMP receptor
Probab=97.99 E-value=5e-05 Score=62.97 Aligned_cols=116 Identities=12% Similarity=0.192 Sum_probs=67.9
Q ss_pred ccccccCCc---eEEEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCCch-hhHHHHHHHHHHHhhhhhhhhhcccc-
Q psy15494 2 DCWMNDAHS---RWILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPI-GIRKAARAALILVPLFGLHHILLPFR- 76 (149)
Q Consensus 2 ~CWl~~~~~---iw~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~~~-~~~~~~k~~~~L~pLLGltW~~g~~~- 76 (149)
-||++++.. +..|-+|+.+++.++.++.....+...+..+.... ++++ ..+...|... -.-++=+.|+++...
T Consensus 145 WCWI~~~~~~~r~~lfY~Pl~ii~~~~~ilv~i~~~~~y~~~~~~~s-d~~~~~~~~~~kL~~-Yp~ifiicw~fa~INR 222 (303)
T PF05462_consen 145 WCWIKPEWDVWRFALFYIPLWIIIIISAILVGITMRYIYRVIRNGVS-DNKDKHLKYQLKLVN-YPLIFIICWIFATINR 222 (303)
T ss_pred ceeecCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc-hhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Confidence 399997532 34678999888888776655555544333332221 1122 2222334222 122334588887521
Q ss_pred ---cCCCCCchHHHHHHHHHHhhcchhhhhhhhhhcChHHHHHHHHHH
Q psy15494 77 ---PEPKSPWEMVYDVFSAVLVSSQGLCVSILFCFANVDVHGAFRKMF 121 (149)
Q Consensus 77 ---~~~~~~~~~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~ 121 (149)
..++ ......++-+.+..+||++-++.|.+.|+-.++.+....
T Consensus 223 I~~~~~~--~~~~l~~Lh~~~s~lqGf~nsivy~~n~~~~~~~~~~~~ 268 (303)
T PF05462_consen 223 IYNFIGK--NPFWLSVLHVGFSPLQGFFNSIVYGYNNSLMWRYLGSKI 268 (303)
T ss_pred HHHHhcC--CchHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 1111 234566777889999999999999988876665555443
No 6
>PF10320 7TM_GPCR_Srsx: Serpentine type 7TM GPCR chemoreceptor Srsx; InterPro: IPR019424 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class sx (Srsx), which is a solo family amongst the superfamilies of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=95.74 E-value=0.028 Score=45.08 Aligned_cols=69 Identities=16% Similarity=0.162 Sum_probs=48.6
Q ss_pred hhhHHHHHHHHHHHhhhhhhhhhccc------ccCCCCCc-hHHHH--HHHHHHhhcchhhhhhhhhhcChHHHHHHHHH
Q psy15494 50 IGIRKAARAALILVPLFGLHHILLPF------RPEPKSPW-EMVYD--VFSAVLVSSQGLCVSILFCFANVDVHGAFRKM 120 (149)
Q Consensus 50 ~~~~~~~k~~~~L~pLLGltW~~g~~------~~~~~~~~-~~~~~--ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~ 120 (149)
++.+|..|....++.+.-.+|.+... ....+++. ..+.. -+++.+|.-|=+|++. .+|+|=|+++++.
T Consensus 180 ~~~~kv~ksL~v~v~i~i~~w~~s~~~~~v~~~~~~~~~~~~~i~~~~~i~v~~~~s~~ffV~~---~~S~EYR~af~~~ 256 (257)
T PF10320_consen 180 SRSKKVFKSLKVTVIIFIFSWFLSQIINTVSLALGLDGETIAIIQMYAGIFVNISYSQNFFVYY---WRSSEYRKAFREL 256 (257)
T ss_pred hhHHHHHHHhhhheeeeeHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHheEEE---EcCHHHHHHHHHh
Confidence 34578899999999999999998631 12211111 12333 3888899999888655 4999999999987
Q ss_pred H
Q psy15494 121 F 121 (149)
Q Consensus 121 ~ 121 (149)
|
T Consensus 257 ~ 257 (257)
T PF10320_consen 257 F 257 (257)
T ss_pred C
Confidence 5
No 7
>PHA03087 G protein-coupled chemokine receptor-like protein; Provisional
Probab=94.13 E-value=0.91 Score=37.02 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcc----cc------cCCCCCchHHHHHH---HHHHhhcchhhhhhhhhhcChHHHHHHH
Q psy15494 52 IRKAARAALILVPLFGLHHILLP----FR------PEPKSPWEMVYDVF---SAVLVSSQGLCVSILFCFANVDVHGAFR 118 (149)
Q Consensus 52 ~~~~~k~~~~L~pLLGltW~~g~----~~------~~~~~~~~~~~~yl---F~ilnslQG~fIfl~yC~~n~eVr~~~~ 118 (149)
.+|..|..+.++.++-+.|.-.. .. ..+.........++ ...+-.+-+..=-++|++.+++.|+++|
T Consensus 239 ~~k~~k~l~~iv~~f~i~w~P~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ns~~NPiIY~~~~~~fr~~~~ 318 (335)
T PHA03087 239 NKKAIKLVLIIVILFVIFWLPFNVSVFVYSLHILHFKSGCKAVKYIQYALHVTEIISLSHCCINPLIYAFVSEFFNKHKK 318 (335)
T ss_pred cchHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHHHHhhhhhHHHHcCHHHHHHHH
Confidence 35678888888888888886321 10 01111111122222 2223333455677899999999999999
Q ss_pred HHHHHhhcCCCCccc
Q psy15494 119 KMFYRLQRRGTHSTM 133 (149)
Q Consensus 119 r~~~r~~~~~~~~~~ 133 (149)
+.++....++.+++.
T Consensus 319 ~~~~~~~~~~~~~~~ 333 (335)
T PHA03087 319 KSLKLMFTSSGKSIS 333 (335)
T ss_pred HHHHHHhhcCCcccc
Confidence 998777766655543
No 8
>PF02101 Ocular_alb: Ocular albinism type 1 protein; InterPro: IPR001414 Ocular albinism type 1 (OA1) is an X-linked disorder characterised by severe impairment of visual acuity, retinal hypopigmentation and the presence of macromelanosomes. A novel transcript from the OA1 critical region is expressed in high levels in RNA samples from retina and from melanoma and encodes a potential integral membrane protein []. This protein is of unknown function but is known to bind heterotrimeric G proteins.; GO: 0016020 membrane
Probab=93.29 E-value=0.31 Score=41.91 Aligned_cols=94 Identities=14% Similarity=0.198 Sum_probs=57.4
Q ss_pred EEehhhHHHHHHHHHHHHHHHHHHHhhccCCCCCCC-ch-hhHHHHHHH-HHHHhhhhhhhhhcc------c--ccCCC-
Q psy15494 13 ILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPA-PI-GIRKAARAA-LILVPLFGLHHILLP------F--RPEPK- 80 (149)
Q Consensus 13 ~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~~~-~~-~~~~~~k~~-~~L~pLLGltW~~g~------~--~~~~~- 80 (149)
..-+|++++++.|=++|....+.+-+.++..+...+ ++ +.-+.+|-= +....++=+.|+-.. + ....+
T Consensus 197 ttY~PlllVlvaNPiLy~~a~~~V~~~lk~r~g~yT~~ER~l~~~IK~kFf~I~lVF~iCWlpNIINg~LL~~l~~~~~i 276 (405)
T PF02101_consen 197 TTYIPLLLVLVANPILYIKAVRAVASLLKGRQGIYTENERRLGAQIKIKFFKIMLVFYICWLPNIINGSLLFYLEMQPDI 276 (405)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHhHHHHHHhhccccc
Confidence 346999999999999999999887665554432221 11 111223221 222335557777431 1 11111
Q ss_pred -C-------CchHHHHHHHHHHhhcchhhhhhhh
Q psy15494 81 -S-------PWEMVYDVFSAVLVSSQGLCVSILF 106 (149)
Q Consensus 81 -~-------~~~~~~~ylF~ilnslQG~fIfl~y 106 (149)
+ +.....-|+..|+|-+|||+-.+.|
T Consensus 277 ~~~sl~~~~~a~~t~W~IMaIlNPlQgfLnsLay 310 (405)
T PF02101_consen 277 NGGSLKQVRNAALTTWFIMAILNPLQGFLNSLAY 310 (405)
T ss_pred ccccccchhhHHHHHHHHHHHHhHHHHHHHHHhh
Confidence 0 1234567899999999999999987
No 9
>PF10328 7TM_GPCR_Srx: Serpentine type 7TM GPCR chemoreceptor Srx; InterPro: IPR019430 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class x (Srx) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=89.78 E-value=1 Score=35.99 Aligned_cols=27 Identities=19% Similarity=0.230 Sum_probs=19.8
Q ss_pred HHHHHhhcchhhhhhhhhhcChHHHHHHHHH
Q psy15494 90 FSAVLVSSQGLCVSILFCFANVDVHGAFRKM 120 (149)
Q Consensus 90 lF~ilnslQG~fIfl~yC~~n~eVr~~~~r~ 120 (149)
.....+++.|+... ..|+|+|+.++|.
T Consensus 246 ~w~~~h~~DG~i~l----~fN~~~r~~~~~~ 272 (274)
T PF10328_consen 246 SWVLVHALDGLIML----IFNSEIRRKIRKK 272 (274)
T ss_pred HHHHHHHhcceeEe----EEcHHHHHHHHhc
Confidence 34667888888754 4689999887764
No 10
>PHA02834 chemokine receptor-like protein; Provisional
Probab=82.85 E-value=1.7 Score=35.68 Aligned_cols=29 Identities=21% Similarity=0.439 Sum_probs=23.0
Q ss_pred hhhhhhhhhhcChHHHHHHHHHHHHhhcC
Q psy15494 99 GLCVSILFCFANVDVHGAFRKMFYRLQRR 127 (149)
Q Consensus 99 G~fIfl~yC~~n~eVr~~~~r~~~r~~~~ 127 (149)
..+==++|++.|++.|+++++.++++.+.
T Consensus 285 s~iNPiIY~~~~~~fR~~~~~~~~~~~~~ 313 (323)
T PHA02834 285 CCVNPIIYAFVGKNFKKVFKNMFCRTNNI 313 (323)
T ss_pred ccccHHHHHHhcHHHHHHHHHHHHhhhhh
Confidence 33445789999999999999988777653
No 11
>PHA03234 DNA packaging protein UL33; Provisional
Probab=81.92 E-value=9.2 Score=31.84 Aligned_cols=67 Identities=13% Similarity=0.019 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHhhhhhhhhhcc----c---c---cCCCCCch----------HHHHHHHHHHhhcchhhhhhhhhhcCh
Q psy15494 52 IRKAARAALILVPLFGLHHILLP----F---R---PEPKSPWE----------MVYDVFSAVLVSSQGLCVSILFCFANV 111 (149)
Q Consensus 52 ~~~~~k~~~~L~pLLGltW~~g~----~---~---~~~~~~~~----------~~~~ylF~ilnslQG~fIfl~yC~~n~ 111 (149)
.+|.+|..+.++..+.+.|.=-. . . ..++.... ..++|+-+.+|. ++|++.++
T Consensus 232 ~~k~~k~i~~vv~vF~iCWlPy~iv~l~~~~~~~~~~~~c~~~~~~~~~~~v~~~La~~nsclNP-------iIY~f~~~ 304 (338)
T PHA03234 232 HKKTLFFIRILILSFLCIQIPNIAILICEIAFLYIANNSCFGLAQREILQIIIRLMPEIHCFSNP-------LVYAFTGG 304 (338)
T ss_pred hhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHhhhhhhH-------HHHHHhhH
Confidence 35778888888888888887321 1 0 00111111 112223333333 68999999
Q ss_pred HHHHHHHHHHHHhh
Q psy15494 112 DVHGAFRKMFYRLQ 125 (149)
Q Consensus 112 eVr~~~~r~~~r~~ 125 (149)
+.|+++++.++++.
T Consensus 305 ~FR~~~~~~~~~~~ 318 (338)
T PHA03234 305 DFRLRFTACFQDFF 318 (338)
T ss_pred HHHHHHHHHHHHHh
Confidence 99999998877653
No 12
>PF10324 7TM_GPCR_Srw: Serpentine type 7TM GPCR chemoreceptor Srw; InterPro: IPR019427 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class w (Srw), which is a solo family amongst the superfamilies of chemoreceptors. The genes encoding Srw do not appear to be under as strong an adaptive evolutionary pressure as those of Srz [].
Probab=81.78 E-value=12 Score=30.24 Aligned_cols=33 Identities=15% Similarity=0.338 Sum_probs=23.6
Q ss_pred HHHHHhhcchhhhhhhhhhcChHHHHHHHHHHH
Q psy15494 90 FSAVLVSSQGLCVSILFCFANVDVHGAFRKMFY 122 (149)
Q Consensus 90 lF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~ 122 (149)
++..+..+=...=|+++|+++.|=|++.|+.++
T Consensus 284 ~~~~l~~~ns~~h~~ic~~mSsqYR~t~~~~f~ 316 (318)
T PF10324_consen 284 IFNILITINSSIHFFICCFMSSQYRKTVKKLFG 316 (318)
T ss_pred HHHHHHHHHhhhHHHhhhhhhHHHHHHHHHHhc
Confidence 333333444556678899999999999998764
No 13
>PHA03235 DNA packaging protein UL33; Provisional
Probab=79.28 E-value=18 Score=31.09 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=21.7
Q ss_pred HhhcchhhhhhhhhhcChHHHHHHHHHHHH
Q psy15494 94 LVSSQGLCVSILFCFANVDVHGAFRKMFYR 123 (149)
Q Consensus 94 lnslQG~fIfl~yC~~n~eVr~~~~r~~~r 123 (149)
+..+...+==++|++.+++.|+++++.+++
T Consensus 294 La~~ns~lNPiIY~~~~~~FRk~~~~~l~~ 323 (409)
T PHA03235 294 VPNLHCLLNPILYAFLGNDFLKRFRQCFRG 323 (409)
T ss_pred HHHHHHhHhHHHHHHhhHHHHHHHHHHHhh
Confidence 333444444579999999999999877754
No 14
>PF10321 7TM_GPCR_Srt: Serpentine type 7TM GPCR chemoreceptor Srt; InterPro: IPR019425 Chemoreception is mediated in Caenorhabditis elegans by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs) of proteins which are of the serpentine type []. Srt is a member of the Srg superfamily of chemoreceptors. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' [].
Probab=77.93 E-value=17 Score=30.30 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=25.7
Q ss_pred HHHhhcchhhhhhhhhhcChHHHHHHHHHHHHhh
Q psy15494 92 AVLVSSQGLCVSILFCFANVDVHGAFRKMFYRLQ 125 (149)
Q Consensus 92 ~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~r~~ 125 (149)
.+.=.+.-=...++|-..|+++|++++|...+.+
T Consensus 276 ~~~Wql~~g~~~iIYl~lNrtIR~~~~k~~~~k~ 309 (313)
T PF10321_consen 276 QISWQLSHGCPPIIYLTLNRTIRNSVLKMLGPKK 309 (313)
T ss_pred HHHHhccCCccceEEEEECHHHHHHHHHHHcccc
Confidence 4444555556778899999999999999886544
No 15
>PF05296 TAS2R: Mammalian taste receptor protein (TAS2R); InterPro: IPR007960 This family consists of several forms of mammalian taste receptor proteins (TAS2Rs). TAS2Rs are G protein-coupled receptors expressed in subsets of taste receptor cells of the tongue and palate epithelia and are organised in the genome in clusters. The proteins are genetically linked to loci that influence bitter perception in mice and humans [].; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway, 0050909 sensory perception of taste, 0016021 integral to membrane
Probab=76.89 E-value=40 Score=27.66 Aligned_cols=102 Identities=17% Similarity=0.290 Sum_probs=50.1
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHhhccCCCCC---CCchhhHHHHHHHHHHHhhhhhhhhhcccc------cCCCCCchHH
Q psy15494 16 VPVCLSILVNLAILMNVLRVLLTKLHSNSTN---PAPIGIRKAARAALILVPLFGLHHILLPFR------PEPKSPWEMV 86 (149)
Q Consensus 16 ~Pv~~il~iN~~if~~v~~~l~~kl~~~~~~---~~~~~~~~~~k~~~~L~pLLGltW~~g~~~------~~~~~~~~~~ 86 (149)
.|..+.+.-. +.++.-+++-.++++.+.++ .+.+.-.+++|..+.++.+.=+ +.++... ..+++....+
T Consensus 191 lPf~i~l~s~-~lli~SL~rH~r~M~~n~~g~~~ps~~aH~~a~k~~~sfl~ly~~-~~~~~~~~~~~~~~~~~~~~~~~ 268 (303)
T PF05296_consen 191 LPFLIFLVSS-ILLIFSLWRHMRRMQKNATGFRDPSTEAHIRAIKTMISFLILYII-YFLSLILSFLSFFFPENSIWFWV 268 (303)
T ss_pred HhHHHHHHHH-HHHHHHHHHHHHHhhCCCCCCCCCCcHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhccccHHHHH
Confidence 3444333333 33333444444555544322 2233445677777766544433 3332211 1111222234
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcChHHHHHHHHHHHH
Q psy15494 87 YDVFSAVLVSSQGLCVSILFCFANVDVHGAFRKMFYR 123 (149)
Q Consensus 87 ~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~r 123 (149)
...+.++..|.|-+.. -+-|++.|++.++.+..
T Consensus 269 ~~~i~~~yps~hs~iL----Ilgn~KLr~~~~~il~~ 301 (303)
T PF05296_consen 269 CEIIIALYPSGHSIIL----ILGNPKLRQALLKILWC 301 (303)
T ss_pred HHHHHHHHHHHHHHHH----hcCchHHHHHHHHHHhh
Confidence 4445556666664433 35799999999987643
No 16
>KOG4219|consensus
Probab=67.69 E-value=32 Score=30.05 Aligned_cols=73 Identities=21% Similarity=0.371 Sum_probs=41.1
Q ss_pred hHHHHHHHHHHHhhhhhhhhhc-----ccccCCCCCchHHHH--HHHHH-HhhcchhhhhhhhhhcChHHHHHHHHHHHH
Q psy15494 52 IRKAARAALILVPLFGLHHILL-----PFRPEPKSPWEMVYD--VFSAV-LVSSQGLCVSILFCFANVDVHGAFRKMFYR 123 (149)
Q Consensus 52 ~~~~~k~~~~L~pLLGltW~~g-----~~~~~~~~~~~~~~~--ylF~i-lnslQG~fIfl~yC~~n~eVr~~~~r~~~r 123 (149)
-+|.+|..++.+..+++.|+=- +.+..++-......+ |+..- +-.----+==++||++|++.|..++|.++-
T Consensus 256 k~K~vkmliiVV~~FaicWlPyh~y~il~~~~~~i~~~k~i~~vyl~~~WLaMSst~yNPiIY~~lN~Rfr~gf~~~fr~ 335 (423)
T KOG4219|consen 256 KKKVVKMLIIVVVIFAICWLPYHIYFILNATNPEINRKKFIQQVYLAIYWLAMSSTCYNPIIYCFLNKRFRGGFRRAFRW 335 (423)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhccHhhhhhHHHHHHHHhhhhhe
Confidence 4578889999999999999831 111111100111111 11111 111111233468999999999999988754
Q ss_pred h
Q psy15494 124 L 124 (149)
Q Consensus 124 ~ 124 (149)
+
T Consensus 336 c 336 (423)
T KOG4219|consen 336 C 336 (423)
T ss_pred e
Confidence 3
No 17
>PF10292 7TM_GPCR_Srab: Serpentine type 7TM GPCR receptor class ab chemoreceptor; InterPro: IPR019408 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srab is part of the Sra superfamily of chemoreceptors. The expression pattern of the srab genes is biologically intriguing. Of the six promoters successfully expressed in transgenic organisms, one was exclusively expressed in the tail phasmid neurons, two were exclusively expressed in a head amphid neuron, and two were expressed both in the head and tail neurons as well as a limited number of other cells [].
Probab=66.35 E-value=72 Score=26.22 Aligned_cols=71 Identities=18% Similarity=0.355 Sum_probs=40.0
Q ss_pred ccccccCCceEEEehhhHHHHHHHHHHHHHHHHHHHh---hccCCCCC---CCchhhHHHHHHHHHHHhhhhhhhhhc
Q psy15494 2 DCWMNDAHSRWILTVPVCLSILVNLAILMNVLRVLLT---KLHSNSTN---PAPIGIRKAARAALILVPLFGLHHILL 73 (149)
Q Consensus 2 ~CWl~~~~~iw~f~~Pv~~il~iN~~if~~v~~~l~~---kl~~~~~~---~~~~~~~~~~k~~~~L~pLLGltW~~g 73 (149)
+|+...++..+....|..+++++|++.++... .+.+ |+|+.... .++-|....+|+.=.|.|...+++++.
T Consensus 170 yC~~~~~~~~~~~~~~~~~~~~~~i~~~i~f~-~L~~~Nkk~r~~~~~~~LS~RYQl~ENl~slr~L~p~~~~~~i~~ 246 (324)
T PF10292_consen 170 YCQASSSSSPYRVNIPFIVILVLQILALILFR-YLLRKNKKLRKQQKHSTLSERYQLEENLRSLRLLKPFIILSSIFI 246 (324)
T ss_pred eeEEecCCCchhhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccCCCcchHHhHHhHHHHHHHHHHHHHHHHHHH
Confidence 57776544445567777788888776665432 2222 33332111 234455566666666667776666653
No 18
>PF10318 7TM_GPCR_Srh: Serpentine type 7TM GPCR chemoreceptor Srh; InterPro: IPR019422 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. Srh is part of the Str superfamily of chemoreceptors [].
Probab=66.05 E-value=31 Score=27.67 Aligned_cols=38 Identities=13% Similarity=0.281 Sum_probs=31.7
Q ss_pred HHHHHHHHHHhhcchhhhhhhhhhcChHHHHHHHHHHH
Q psy15494 85 MVYDVFSAVLVSSQGLCVSILFCFANVDVHGAFRKMFY 122 (149)
Q Consensus 85 ~~~~ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r~~~ 122 (149)
....++..++-+.+|..--+...+.++.-|+...+.++
T Consensus 264 q~~~n~~~~~~~~HG~~sti~mi~~~~pYR~~~~~~~~ 301 (302)
T PF10318_consen 264 QALNNISFIIISLHGIASTIVMILVHKPYRKFLLSLFR 301 (302)
T ss_pred cccchHHHHHHHhccHHHHHHHhhccHHHHHHHHHHhc
Confidence 44556777888999999999999999999998887654
No 19
>PHA02638 CC chemokine receptor-like protein; Provisional
Probab=64.43 E-value=61 Score=27.81 Aligned_cols=23 Identities=4% Similarity=0.226 Sum_probs=18.3
Q ss_pred hhhhhhcChHHHHHHHHHHHHhh
Q psy15494 103 SILFCFANVDVHGAFRKMFYRLQ 125 (149)
Q Consensus 103 fl~yC~~n~eVr~~~~r~~~r~~ 125 (149)
=++|++.+++.|+++++.+++..
T Consensus 377 PiIY~f~~~~FR~~l~~~~~~~~ 399 (417)
T PHA02638 377 PLIYTLIGENFRMHLLMIFRNIF 399 (417)
T ss_pred HHHHHHhCHHHHHHHHHHHHHhc
Confidence 46788889999999998775554
No 20
>PF10323 7TM_GPCR_Srv: Serpentine type 7TM GPCR chemoreceptor Srv; InterPro: IPR019426 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The nematode Caenorhabditis elegans has only 14 types of chemosensory neuron, yet is able to sense and respond to several hundred different chemicals because each neuron detects several stimuli []. Chemoperception is one of the central senses of soil nematodes like C. elegans which are otherwise 'blind' and 'deaf' []. Chemoreception in C. elegans is mediated by members of the seven-transmembrane G-protein-coupled receptor class (7TM GPCRs). More than 1300 potential chemoreceptor genes have been identified in C. elegans, which are generally prefixed sr for serpentine receptor. The receptor superfamilies include Sra (Sra, Srb, Srab, Sre), Str (Srh, Str, Sri, Srd, Srj, Srm, Srn) and Srg (Srx, Srt, Srg, Sru, Srv, Srxa), as well as the families Srw, Srz, Srbc, Srsx and Srr [, , ]. Many of these proteins have homologues in Caenorhabditis briggsae. This entry represents serpentine receptor class v (Srv) from the Srg superfamily [, ]. Srg receptors contain seven hydrophobic, putative transmembrane, regions and can be distinguished from other 7TM GPCR receptors by their own characteristic TM signatures.
Probab=52.80 E-value=1.2e+02 Score=24.46 Aligned_cols=14 Identities=29% Similarity=0.487 Sum_probs=11.1
Q ss_pred hcChHHHHHHHHHH
Q psy15494 108 FANVDVHGAFRKMF 121 (149)
Q Consensus 108 ~~n~eVr~~~~r~~ 121 (149)
+.|+++|+++++..
T Consensus 268 i~n~~lr~~~~~~~ 281 (283)
T PF10323_consen 268 IFNKDLRKQVRRML 281 (283)
T ss_pred hccHHHHHHHHHHc
Confidence 36999999888764
No 21
>PF11970 Git3_C: G protein-coupled glucose receptor regulating Gpa2 C-term; InterPro: IPR022596 This entry contains a functionally uncharacterised region belonging to the Git3 G-protein coupled receptor. Git3 is one of six proteins required for glucose-triggered adenylate cyclase activation, and is a G protein-coupled receptor responsible for the activation of adenylate cyclase through Gpa2 - heterotrimeric G protein alpha subunit, part of the glucose-detection pathway. Git3 contains seven predicted transmembrane domains, a third cytoplasmic loop and a cytoplasmic tail []. This family is the conserved C-terminal domain of the member proteins.
Probab=40.06 E-value=73 Score=21.00 Aligned_cols=62 Identities=13% Similarity=0.131 Sum_probs=38.2
Q ss_pred chhhHHHHHHHHHHHhhhhhhhhhcc----cccC--CCCCchHHHHHHHHHHhhcchhhhhhhhhhcC
Q psy15494 49 PIGIRKAARAALILVPLFGLHHILLP----FRPE--PKSPWEMVYDVFSAVLVSSQGLCVSILFCFAN 110 (149)
Q Consensus 49 ~~~~~~~~k~~~~L~pLLGltW~~g~----~~~~--~~~~~~~~~~ylF~ilnslQG~fIfl~yC~~n 110 (149)
++++++.+|..++==..-=+-|++=+ .... .+......+.++-.++-++||+.=.++|.+..
T Consensus 4 r~~i~r~lr~mfiYP~~Yi~lwlfP~~~~~~~~~~~~~~~p~~~l~~i~~~~~~~~G~VD~lvf~~~e 71 (76)
T PF11970_consen 4 RKRIRRQLRSMFIYPLVYIVLWLFPFAAHRMQYMYEIGHGPSFWLFCIAGFMQPSQGFVDCLVFTLRE 71 (76)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHccCHHHhhheeeec
Confidence 34567777766653333345555422 1111 11222456778899999999999999998754
No 22
>PF00001 7tm_1: 7 transmembrane receptor (rhodopsin family) Rhodopsin-like GPCR superfamily signature 5-hydroxytryptamine 7 receptor signature bradykinin receptor signature gastrin receptor signature melatonin receptor signature olfactory receptor signature; InterPro: IPR000276 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The rhodopsin-like GPCRs themselves represent a widespread protein family that includes hormone, neurotransmitter and light receptors, all of which transduce extracellular signals through interaction with guanine nucleotide-binding (G) proteins. Although their activating ligands vary widely in structure and character, the amino acid sequences of the receptors are very similar and are believed to adopt a common structural framework comprising 7 transmembrane (TM) helices [, , ].; GO: 0007186 G-protein coupled receptor protein signaling pathway, 0016021 integral to membrane; PDB: 2KI9_A 3QAK_A 2YDV_A 3VGA_A 3PWH_A 3RFM_A 3EML_A 3VG9_A 3REY_A 3UZA_A ....
Probab=35.60 E-value=30 Score=25.54 Aligned_cols=59 Identities=25% Similarity=0.376 Sum_probs=27.4
Q ss_pred EEehhhHHHHHHHHHHHHHHHHHHHhhccCCCC---CCCchhhHHHHHHHHHHHhhhhhhhhh
Q psy15494 13 ILTVPVCLSILVNLAILMNVLRVLLTKLHSNST---NPAPIGIRKAARAALILVPLFGLHHIL 72 (149)
Q Consensus 13 ~f~~Pv~~il~iN~~if~~v~~~l~~kl~~~~~---~~~~~~~~~~~k~~~~L~pLLGltW~~ 72 (149)
.+..|+.+++..+..++...-+... +.++.+. +.+.++.++..|..+.++..+-+.|.-
T Consensus 156 ~~~~p~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~f~~~~~P 217 (257)
T PF00001_consen 156 FFILPLIIILICYIRILRKLRRQRK-RIKSQSSSSSRRRSRRERRAARTLLIIVLVFLLCWLP 217 (257)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHH-CTCCHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccceeeeeeeccccccccccccc-ccccccccccccccccccccccccccccccccccCCc
Confidence 3456777777766554443322211 1110000 011123345666666666666677763
No 23
>PF01534 Frizzled: Frizzled/Smoothened family membrane region; InterPro: IPR000539 The frizzled (fz) locus of Drosophila coordinates the cytoskeletons of epidermal cells, producing a parallel array of cuticular hairs and bristles [, ]. In fz mutants, the orientation of individual hairs with respect both to their neighbours and to the organism as a whole is altered. In the wild-type wing, all hairs point towards the distal tip []. In the developing wing, fz has 2 functions: it is required for the proximal-distal transmission of an intracellular polarity signal; and it is required for cells to respond to the polarity signal. Fz produces an mRNA that encodes an integral membrane protein with 7 putative transmembrane (TM) domains. This protein should contain both extracellular and cytoplasmic domains, which could function in the transmission and interpretation of polarity information []. This signature is usually found downstream of the Fz domain (IPR000024 from INTERPRO); GO: 0007166 cell surface receptor linked signaling pathway, 0016020 membrane
Probab=30.30 E-value=84 Score=26.43 Aligned_cols=37 Identities=16% Similarity=0.400 Sum_probs=28.2
Q ss_pred ccccccCC---ceEEEehhhHHHHHHHHHHHHHHHHHHHh
Q psy15494 2 DCWMNDAH---SRWILTVPVCLSILVNLAILMNVLRVLLT 38 (149)
Q Consensus 2 ~CWl~~~~---~iw~f~~Pv~~il~iN~~if~~v~~~l~~ 38 (149)
.||..+.+ ..+..++|.++.+++...+++.-...+.+
T Consensus 168 iC~Vg~~~~~~l~~fvl~Pl~i~l~iG~~fL~~G~~~l~r 207 (328)
T PF01534_consen 168 ICFVGNQNPSALRGFVLAPLFIYLLIGTVFLLAGFVSLFR 207 (328)
T ss_pred eeEEeCCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 39988643 34567999999999999988887766553
No 24
>PF12588 PSDC: Phophatidylserine decarboxylase ; InterPro: IPR022237 This domain family is found in bacteria and eukaryotes, and is approximately 140 amino acids in length. The family is found in association with PF02666 from PFAM. Phosphatidylserine decarboxylase (PSD) is an important enzyme in the synthesis of phosphatidylethanolamine in both prokaryotes and eukaryotes.
Probab=29.59 E-value=62 Score=24.02 Aligned_cols=31 Identities=26% Similarity=0.424 Sum_probs=25.7
Q ss_pred hcChHHHHHHHHHHHHhhc--CCCCccceeccC
Q psy15494 108 FANVDVHGAFRKMFYRLQR--RGTHSTMVLHTN 138 (149)
Q Consensus 108 ~~n~eVr~~~~r~~~r~~~--~~~~~~~v~~~~ 138 (149)
|++++|-+.+|+-...|.+ .+.+|..|++++
T Consensus 93 F~~p~vN~~lK~ILn~W~~fL~sp~S~~vL~~~ 125 (141)
T PF12588_consen 93 FLDPDVNAQLKKILNEWGEFLSSPASRSVLNTD 125 (141)
T ss_pred HcCHHHHHHHHHHHHHHHHHcCChhhhccccCC
Confidence 5899999999999999986 667777877764
No 25
>KOG3722|consensus
Probab=25.24 E-value=2.3e+02 Score=25.23 Aligned_cols=22 Identities=18% Similarity=-0.094 Sum_probs=15.8
Q ss_pred EEehhhHHHHHHHHHHHHHHHH
Q psy15494 13 ILTVPVCLSILVNLAILMNVLR 34 (149)
Q Consensus 13 ~f~~Pv~~il~iN~~if~~v~~ 34 (149)
+-.||+++.+=+-.+++.++.-
T Consensus 390 s~fG~fGA~lEv~LIfYlmvtS 411 (538)
T KOG3722|consen 390 SKFGLFGACIEVLLIFYLMVTS 411 (538)
T ss_pred hhccchHHHHHHHHHHHHHHHH
Confidence 4468888888777777777653
No 26
>PRK05759 F0F1 ATP synthase subunit B; Validated
Probab=24.43 E-value=1.1e+02 Score=22.18 Aligned_cols=21 Identities=14% Similarity=0.241 Sum_probs=16.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy15494 17 PVCLSILVNLAILMNVLRVLL 37 (149)
Q Consensus 17 Pv~~il~iN~~if~~v~~~l~ 37 (149)
|..+..++||++++.+++.+.
T Consensus 5 ~~~~~~~i~Flil~~il~~~~ 25 (156)
T PRK05759 5 GTLIGQLIAFLILVWFIMKFV 25 (156)
T ss_pred HHHHHHHHHHHHHHHHHHHHh
Confidence 557788899999998886543
No 27
>PF06781 UPF0233: Uncharacterised protein family (UPF0233); InterPro: IPR009619 This is a group of proteins of unknown function.
Probab=22.79 E-value=81 Score=21.52 Aligned_cols=27 Identities=15% Similarity=0.177 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhhhhhhhhhcccccCC
Q psy15494 53 RKAARAALILVPLFGLHHILLPFRPEP 79 (149)
Q Consensus 53 ~~~~k~~~~L~pLLGltW~~g~~~~~~ 79 (149)
.++.+..+.-+-++|+-|+..++...+
T Consensus 30 p~W~~p~m~~lmllGL~WiVvyYi~~~ 56 (87)
T PF06781_consen 30 PRWYAPLMLGLMLLGLLWIVVYYISGG 56 (87)
T ss_pred CccHHHHHHHHHHHHHHHHhhhhcccC
Confidence 467788888888999999998765443
No 28
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=22.44 E-value=4.4e+02 Score=21.65 Aligned_cols=96 Identities=18% Similarity=0.214 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHH---HHHHhhccCCCCCCCchhhHHHHHHHHHHHhhhhhhhhhcccccCCCCC----chHHHHHHHHH
Q psy15494 21 SILVNLAILMNVL---RVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGLHHILLPFRPEPKSP----WEMVYDVFSAV 93 (149)
Q Consensus 21 il~iN~~if~~v~---~~l~~kl~~~~~~~~~~~~~~~~k~~~~L~pLLGltW~~g~~~~~~~~~----~~~~~~ylF~i 93 (149)
+++=|..+++..+ +...+|++..+ ..+.++.-+.+-+..++++.|.+--......+. .+..+..+--.
T Consensus 16 l~vPn~lFllfL~~~~~~s~~KL~~~~-----SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~~lW~ilrff 90 (261)
T PF10160_consen 16 LLVPNLLFLLFLAWRLRKSRRKLRHTR-----SPIFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADKVLWNILRFF 90 (261)
T ss_pred HHHHHHHHHHHHHHhchHHHHHHhcCC-----CccHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHHHHHHHHHHH
Confidence 3344555554433 33345665432 246677888888999999999975432211111 13334443333
Q ss_pred HhhcchhhhhhhhhhcChHHHHHHHHHH
Q psy15494 94 LVSSQGLCVSILFCFANVDVHGAFRKMF 121 (149)
Q Consensus 94 lnslQG~fIfl~yC~~n~eVr~~~~r~~ 121 (149)
+-+++-=.+.+.-.+-+-|-|++++|..
T Consensus 91 lL~lEvSvvvFgL~fghlds~~Si~r~l 118 (261)
T PF10160_consen 91 LLSLEVSVVVFGLQFGHLDSRSSIKRTL 118 (261)
T ss_pred HHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 5566644444445667778899999865
No 29
>CHL00019 atpF ATP synthase CF0 B subunit
Probab=22.44 E-value=1.1e+02 Score=23.07 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=20.6
Q ss_pred EEehhhHHHHHHHHHHHHHHHHHHHh
Q psy15494 13 ILTVPVCLSILVNLAILMNVLRVLLT 38 (149)
Q Consensus 13 ~f~~Pv~~il~iN~~if~~v~~~l~~ 38 (149)
.|-.|+...-++|+++++.+++.+..
T Consensus 21 ~~n~~~~~~~~Inflill~lL~~fl~ 46 (184)
T CHL00019 21 GFNTDILETNLINLSVVLGVLIYFGK 46 (184)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHhH
Confidence 45569888889999999998876543
No 30
>KOG2302|consensus
Probab=22.43 E-value=5.7e+02 Score=25.82 Aligned_cols=31 Identities=19% Similarity=0.036 Sum_probs=20.9
Q ss_pred HHHHHHhhcchhhhhhhhhhcChHHHHHHHH
Q psy15494 89 VFSAVLVSSQGLCVSILFCFANVDVHGAFRK 119 (149)
Q Consensus 89 ylF~ilnslQG~fIfl~yC~~n~eVr~~~~r 119 (149)
..|-++|-|-|.++--+|=-++++=+++-+|
T Consensus 1372 vsffVlnmfVgvvvenfhKcrqhqe~EeArR 1402 (1956)
T KOG2302|consen 1372 VSFFVLNMFVGVVVENFHKCRQHQEAEEARR 1402 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566789999999888885455554444443
No 31
>PF00430 ATP-synt_B: ATP synthase B/B' CF(0); InterPro: IPR002146 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunits B and B' from the F0 complex in F-ATPases found in chloroplasts and in bacterial plasma membranes. The B subunits are part of the peripheral stalk that links the F1 and F0 complexes together, and which acts as a stator to prevent certain subunits from rotating with the central rotary element. The peripheral stalk differs in subunit composition between mitochondrial, chloroplast and bacterial F-ATPases. In bacterial and chloroplast F-ATPases, the peripheral stalk is composed of one copy of the delta subunit (homologous to OSCP in mitochondria), and two copies of subunit B in bacteria, or one copy each of subunits B and B' in chloroplasts and photosynthetic bacteria []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0045263 proton-transporting ATP synthase complex, coupling factor F(o); PDB: 1L2P_A 2KHK_A 1B9U_A.
Probab=20.90 E-value=1.2e+02 Score=20.98 Aligned_cols=20 Identities=30% Similarity=0.368 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q psy15494 19 CLSILVNLAILMNVLRVLLT 38 (149)
Q Consensus 19 ~~il~iN~~if~~v~~~l~~ 38 (149)
++..++||++++.++..+..
T Consensus 2 l~~~~i~Flil~~~l~~~~~ 21 (132)
T PF00430_consen 2 LFWQLINFLILFFLLNKFLY 21 (132)
T ss_dssp HHHHHHHHHHHHHHHHHHTH
T ss_pred hHHHHHHHHHHHHHHHHHHH
Confidence 46678899999988866544
No 32
>PF12399 BCA_ABC_TP_C: Branched-chain amino acid ATP-binding cassette transporter
Probab=20.44 E-value=66 Score=16.38 Aligned_cols=10 Identities=40% Similarity=0.488 Sum_probs=7.6
Q ss_pred hcChHHHHHH
Q psy15494 108 FANVDVHGAF 117 (149)
Q Consensus 108 ~~n~eVr~~~ 117 (149)
..|++||++|
T Consensus 12 ~~n~~V~~aY 21 (23)
T PF12399_consen 12 RANPEVREAY 21 (23)
T ss_pred hcCHHHHHhh
Confidence 4688888876
Done!