RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy15494
         (149 letters)



>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal
           5' phosphat external aldimine, chloroplast, pyridox
           phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB:
           3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A
           3eia_A*
          Length = 432

 Score = 26.4 bits (59), Expect = 4.2
 Identities = 5/28 (17%), Positives = 9/28 (32%)

Query: 33  LRVLLTKLHSNSTNPAPIGIRKAARAAL 60
           +     ++     N A    +  A A L
Sbjct: 296 VAKDFNRIICTCFNGASNISQAGALACL 323


>3asa_A LL-diaminopimelate aminotransferase; PLP dependent
           aminotransferase; 2.05A {Chlamydia trachomatis} PDB:
           3asb_A*
          Length = 400

 Score = 26.4 bits (59), Expect = 4.2
 Identities = 7/25 (28%), Positives = 11/25 (44%)

Query: 36  LLTKLHSNSTNPAPIGIRKAARAAL 60
              +  S + N A I  ++A  A L
Sbjct: 265 DWERFLSTTFNGASIPAQEAGVAGL 289


>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5'
           phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A
           {Chlamydomonas reinhardtii}
          Length = 449

 Score = 25.7 bits (57), Expect = 6.8
 Identities = 4/28 (14%), Positives = 10/28 (35%)

Query: 33  LRVLLTKLHSNSTNPAPIGIRKAARAAL 60
           +     ++ +   N A   ++    A L
Sbjct: 308 VHADWNRVMTTCFNGASNIVQAGGLACL 335


>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A
           {Staphylococcus aureus}
          Length = 404

 Score = 25.6 bits (57), Expect = 6.9
 Identities = 6/24 (25%), Positives = 11/24 (45%)

Query: 37  LTKLHSNSTNPAPIGIRKAARAAL 60
           L K  +++       ++ AA  AL
Sbjct: 275 LKKYQTHTNAGMFGALQDAAIYAL 298


>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
           programmed cell death; HET: DTP; 6.90A {Drosophila
           melanogaster} PDB: 3iz8_A*
          Length = 1221

 Score = 26.0 bits (56), Expect = 7.4
 Identities = 18/105 (17%), Positives = 37/105 (35%), Gaps = 25/105 (23%)

Query: 12  WILTVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGIRK-AARAALILVPLFGLHH 70
           W+  +  C S    L +L  +L  +     S S + + I +R  + +A L          
Sbjct: 186 WL-NLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAEL---------R 235

Query: 71  ILLPFRPEPKS---------PWEMVYDVF---SAVLVSSQGLCVS 103
            LL  +P                  ++ F     +L++++   V+
Sbjct: 236 RLLKSKPYENCLLVLLNVQNAK--AWNAFNLSCKILLTTRFKQVT 278


>4ea3_A Fusion protein of nociceptin receptor and cytochr; PSI-biology GPCR
           network, structural genomics, GPCR membrane 7TM NOP ORL1
           cytochrome B562; HET: 0NN OLB OLA OLC; 3.01A {Homo
           sapiens}
          Length = 434

 Score = 25.5 bits (56), Expect = 7.7
 Identities = 24/127 (18%), Positives = 45/127 (35%), Gaps = 19/127 (14%)

Query: 32  VLRVLLTKLHSNSTNPAPIGIRKAARAALILVPLFGL----HHILL---PFRPEPKSPWE 84
           ++R L      + +      +R+  R  L++V +F        + +       +P S   
Sbjct: 312 MIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFVLAQGLGVQPSSETA 371

Query: 85  MVYDVFSAVL--VSSQGLCVS-ILFCFANVDVHGAFRKMFYRL--QRRGTHSTMVLHTNY 139
           +    F   L  V+S   C++ IL+ F + +    F+  F +            VL    
Sbjct: 372 VAILRFCTALGYVNS---CLNPILYAFLDEN----FKACFRKFCCASALGRPLEVLFQGP 424

Query: 140 CHSTHVH 146
            H  H H
Sbjct: 425 HHHHHHH 431


>4ap5_A GDP-fucose protein O-fucosyltransferase 2; GT-B, GT68; HET: NAG;
          3.00A {Homo sapiens} PDB: 4ap6_A*
          Length = 408

 Score = 25.4 bits (55), Expect = 7.8
 Identities = 10/38 (26%), Positives = 17/38 (44%)

Query: 52 IRKAARAALILVPLFGLHHILLPFRPEPKSPWEMVYDV 89
          + K     L+L P   L+H   P   + + PW   +D+
Sbjct: 52 LLKTEEWVLVLPPWGRLYHWQSPDIHQVRIPWSEFFDL 89


>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas
           aeruginosa}
          Length = 412

 Score = 25.2 bits (56), Expect = 9.3
 Identities = 7/24 (29%), Positives = 11/24 (45%)

Query: 37  LTKLHSNSTNPAPIGIRKAARAAL 60
           L ++ S         ++ AA AAL
Sbjct: 267 LARIKSYHDYGTFTPLQVAAIAAL 290


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.330    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0639    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,275,174
Number of extensions: 120889
Number of successful extensions: 354
Number of sequences better than 10.0: 1
Number of HSP's gapped: 353
Number of HSP's successfully gapped: 26
Length of query: 149
Length of database: 6,701,793
Length adjustment: 85
Effective length of query: 64
Effective length of database: 4,328,508
Effective search space: 277024512
Effective search space used: 277024512
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 53 (24.4 bits)