RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy15494
         (149 letters)



>g1f8v.1 b.121.4.4 (A:,D:) Alphanodavirus capsid protein {Pariacoto
           virus [TaxId: 103782]}
          Length = 395

 Score = 24.2 bits (52), Expect = 9.5
 Identities = 13/38 (34%), Positives = 16/38 (42%)

Query: 15  TVPVCLSILVNLAILMNVLRVLLTKLHSNSTNPAPIGI 52
             PV +S   N      VLRVL     + S  P P+G 
Sbjct: 345 RFPVAVSSRENSKFWEGVLRVLNQISGTLSVIPGPVGT 382


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.330    0.140    0.460 

Gapped
Lambda     K      H
   0.267   0.0551    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 555,944
Number of extensions: 21750
Number of successful extensions: 79
Number of sequences better than 10.0: 1
Number of HSP's gapped: 79
Number of HSP's successfully gapped: 8
Length of query: 149
Length of database: 2,407,596
Length adjustment: 77
Effective length of query: 72
Effective length of database: 1,350,386
Effective search space: 97227792
Effective search space used: 97227792
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 49 (23.1 bits)