BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy15495
(158 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N7R|A Chain A, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7R|B Chain B, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7S|A Chain A, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7S|B Chain B, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
Length = 115
Score = 67.8 bits (164), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 39/76 (51%)
Query: 14 FMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTW 73
M + +YC +DGW CWN AG + CP++ FD + C ++G W
Sbjct: 34 IMQDPIQQAEGVYCNRTWDGWLCWNDVAAGTESMQLCPDYFQDFDPSEKVTKICDQDGNW 93
Query: 74 FQHPVTRKFWSNYTTC 89
F+HP + + W+NYT C
Sbjct: 94 FRHPASNRTWTNYTQC 109
Score = 35.8 bits (81), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 121 RTCLENGTWFQHPVTRKFWSNYTTC 145
+ C ++G WF+HP + + W+NYT C
Sbjct: 85 KICDQDGNWFRHPASNRTWTNYTQC 109
>pdb|3AQF|B Chain B, Crystal Structure Of The Human CrlrRAMP2 EXTRACELLULAR
COMPLEX
Length = 121
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
+YC +DGW CWN AG + CP++ FD + C ++G WF+HP + + W+
Sbjct: 48 VYCNRTWDGWLCWNDVAAGTESXQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 107
Query: 85 NYTTC 89
NYT C
Sbjct: 108 NYTQC 112
Score = 36.2 bits (82), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 121 RTCLENGTWFQHPVTRKFWSNYTTC 145
+ C ++G WF+HP + + W+NYT C
Sbjct: 88 KICDQDGNWFRHPASNRTWTNYTQC 112
>pdb|3N7P|A Chain A, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7P|B Chain B, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7P|C Chain C, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
pdb|3N7P|J Chain J, Crystal Structure Of The Ectodomain Complex Of The Cgrp
Receptor, A Class-B Gpcr, Reveals The Site Of Drug
Antagonism
Length = 115
Score = 67.0 bits (162), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWS 84
+YC +DGW CWN AG + CP++ FD + C ++G WF+HP + + W+
Sbjct: 45 VYCNRTWDGWLCWNDVAAGTESXQLCPDYFQDFDPSEKVTKICDQDGNWFRHPASNRTWT 104
Query: 85 NYTTC 89
NYT C
Sbjct: 105 NYTQC 109
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 11/25 (44%), Positives = 18/25 (72%)
Query: 121 RTCLENGTWFQHPVTRKFWSNYTTC 145
+ C ++G WF+HP + + W+NYT C
Sbjct: 85 KICDQDGNWFRHPASNRTWTNYTQC 109
>pdb|3L2J|A Chain A, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
pdb|3L2J|B Chain B, Dimeric Structure Of The Ligand-Free Extracellular Domain
Of Parathyroid Hormone Receptor (Pth1r)
Length = 535
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 27 CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY 86
C +D CW GE PCP++I F+ + A R C NG+W P + W+NY
Sbjct: 450 CLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANY 509
Query: 87 TTCI 90
+ C+
Sbjct: 510 SECV 513
Score = 31.6 bits (70), Expect = 0.19, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 119 ALRTCLENGTWFQHPVTRKFWSNYTTCI 146
A R C NG+W P + W+NY+ C+
Sbjct: 486 AYRRCDRNGSWELVPGHNRTWANYSECV 513
>pdb|3C4M|A Chain A, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3C4M|B Chain B, Structure Of Human Parathyroid Hormone In Complex With The
Extracellular Domain Of Its G-Protein-Coupled Receptor
(Pth1r)
pdb|3H3G|A Chain A, Crystal Structure Of The Extracellular Domain Of The Human
Parathyroid Hormone Receptor (Pth1r) In Complex With
Parathyroid Hormone-Related Protein (Pthrp)
Length = 539
Score = 55.5 bits (132), Expect = 1e-08, Method: Composition-based stats.
Identities = 22/64 (34%), Positives = 32/64 (50%)
Query: 27 CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNY 86
C +D CW GE PCP++I F+ + A R C NG+W P + W+NY
Sbjct: 454 CLPEWDHILCWPLGAPGEVVAVPCPDYIYDFNHKGHAYRRCDRNGSWELVPGHNRTWANY 513
Query: 87 TTCI 90
+ C+
Sbjct: 514 SECV 517
Score = 31.6 bits (70), Expect = 0.19, Method: Composition-based stats.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 119 ALRTCLENGTWFQHPVTRKFWSNYTTCI 146
A R C NG+W P + W+NY+ C+
Sbjct: 490 AYRRCDRNGSWELVPGHNRTWANYSECV 517
>pdb|3N93|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N93|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 3
pdb|3N95|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N95|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 2
pdb|3N96|A Chain A, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|B Chain B, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|C Chain C, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
pdb|3N96|D Chain D, Crystal Structure Of Human Crfr2 Alpha Extracellular
Domain In Complex With Urocortin 1
Length = 482
Score = 49.7 bits (117), Expect = 6e-07, Method: Composition-based stats.
Identities = 27/72 (37%), Positives = 34/72 (47%), Gaps = 10/72 (13%)
Query: 26 YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
YC T D +CW + AG PCP + G +++ R A R CLENGTW
Sbjct: 411 YCNTTLDQIGTCWPRSAAGALVERPCPEYFNGVKYNTTRNAYRECLENGTWASK------ 464
Query: 83 WSNYTTCIDIED 94
NY+ C I D
Sbjct: 465 -INYSQCEPILD 475
>pdb|2JND|A Chain A, 3d Nmr Structure Of Ecd1 Of Mcrf-R2b In Complex With
Astressin
Length = 119
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 26 YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
YC T D +CW + G PCP + G +++ R A R CLENGTW
Sbjct: 45 YCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASR------ 98
Query: 83 WSNYTTCIDIEDLK 96
NY+ C I D K
Sbjct: 99 -VNYSHCEPILDDK 111
Score = 29.6 bits (65), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 110 NGLIINL-RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTID 157
NG+ N R A R CLENGTW NY+ C I D K D
Sbjct: 75 NGIKYNTTRNAYRECLENGTWASR-------VNYSHCEPILDDKQRKYD 116
>pdb|1U34|A Chain A, 3d Nmr Structure Of The First Extracellular Domain Of
Crfr- 2beta, A Type B1 G-Protein Coupled Receptor
Length = 119
Score = 43.9 bits (102), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 34/74 (45%), Gaps = 10/74 (13%)
Query: 26 YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
YC T D +CW + G PCP + G +++ R A R CLENGTW
Sbjct: 45 YCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASR------ 98
Query: 83 WSNYTTCIDIEDLK 96
NY+ C I D K
Sbjct: 99 -VNYSHCEPILDDK 111
Score = 29.6 bits (65), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 22/49 (44%), Gaps = 8/49 (16%)
Query: 110 NGLIINL-RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVSTID 157
NG+ N R A R CLENGTW NY+ C I D K D
Sbjct: 75 NGIKYNTTRNAYRECLENGTWASR-------VNYSHCEPILDDKQRKYD 116
>pdb|2JNC|A Chain A, Refined 3d Nmr Structure Of Ecd1 Of Mcrf-R2beta At Ph 5
Length = 119
Score = 42.7 bits (99), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 33/72 (45%), Gaps = 10/72 (13%)
Query: 26 YCPTMFDG-WSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKF 82
YC T D +CW + G PCP + G +++ R A R CLENGTW
Sbjct: 45 YCNTTLDQIGTCWPQSAPGALVERPCPEYFNGIKYNTTRNAYRECLENGTWASR------ 98
Query: 83 WSNYTTCIDIED 94
NY+ C I D
Sbjct: 99 -VNYSHCEPILD 109
Score = 27.3 bits (59), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/42 (42%), Positives = 20/42 (47%), Gaps = 8/42 (19%)
Query: 110 NGLIINL-RFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED 150
NG+ N R A R CLENGTW NY+ C I D
Sbjct: 75 NGIKYNTTRNAYRECLENGTWASR-------VNYSHCEPILD 109
>pdb|3EHU|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
pdb|3EHU|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35 SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
+CW + AG+ PCP F G +++ R CL NG+W NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456
>pdb|3EHT|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (crfr1)
In Complex With Crf
Length = 476
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35 SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
+CW + AG+ PCP F G +++ R CL NG+W NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456
>pdb|3EHS|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Corticotropin Releasing Factor Receptor Type 1 (Crfr1)
Length = 476
Score = 40.0 bits (92), Expect = 6e-04, Method: Composition-based stats.
Identities = 19/60 (31%), Positives = 28/60 (46%), Gaps = 9/60 (15%)
Query: 35 SCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDI 92
+CW + AG+ PCP F G +++ R CL NG+W NY+ C +I
Sbjct: 404 TCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLANGSWAAR-------VNYSECQEI 456
>pdb|2QKH|A Chain A, Crystal Structure Of The Extracellular Domain Of Human Gip
Receptor In Complex With The Hormone Gip
Length = 135
Score = 38.1 bits (87), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 34/79 (43%), Gaps = 9/79 (11%)
Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTR 80
S L C FD + CW+ TAR CP ++ + F LR C +G W
Sbjct: 54 SGLACNGSFDMYVCWDYAAPNATARASCPWYLPWHHHVAAGFVLRQCGSDGQW------- 106
Query: 81 KFWSNYTTCIDIEDLKVYL 99
W ++T C + E + +L
Sbjct: 107 GLWRDHTQCENPEKNEAFL 125
>pdb|4ERS|A Chain A, A Molecular Basis For Negative Regulation Of The
Glucagon Receptor
Length = 96
Score = 37.7 bits (86), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 19 LSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQH 76
L + L C FD +SCW T A TA CP ++ RF + C +G W +
Sbjct: 23 LPPPTELVCNRTFDKYSCWPDTPANTTANISCPWYLPWHHKVQHRFVFKRCGPDGQWVRG 82
Query: 77 PVTRKFWSNYTTC 89
P + W + + C
Sbjct: 83 PRGQP-WRDASQC 94
>pdb|2XDG|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Growth Hormone Releasing Hormone Receptor.
pdb|2XDG|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Growth Hormone Releasing Hormone Receptor
Length = 92
Score = 37.4 bits (85), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 17/43 (39%), Positives = 23/43 (53%)
Query: 23 STLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALR 65
+TL CP +DG CW +GE PCP+F F S A++
Sbjct: 20 TTLGCPATWDGLLCWPTAGSGEWVTLPCPDFFSHFSSESGAVK 62
>pdb|3N94|A Chain A, Crystal Structure Of Human Pituitary Adenylate Cyclase 1
Receptor- Short N-Terminal Extracellular Domain
Length = 475
Score = 36.2 bits (82), Expect = 0.007, Method: Composition-based stats.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRR---FALRTCLENG 71
DS+ CP M+D +CW GE CP F+ + R C E+G
Sbjct: 399 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG 451
>pdb|2L27|A Chain A, Nmr Structure Of The Ecd1 Of Crf-R1 In Complex With A
Peptide Agonist
Length = 84
Score = 35.8 bits (81), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 37/82 (45%), Gaps = 13/82 (15%)
Query: 17 QTLSLDST---LYCPTMFD-GWSCWNATLAGETARTPCPNFIVG--FDSRRFALRTCLEN 70
++LSL S L C D +CW + AG+ PCP F G +++ R CL N
Sbjct: 7 ESLSLASNISGLQCNASVDLIGTCWPRSPAGQLVVRPCPAFFYGVRYNTTNNGYRECLAN 66
Query: 71 GTWFQHPVTRKFWSNYTTCIDI 92
G+W NY+ C +I
Sbjct: 67 GSWAAR-------VNYSECQEI 81
>pdb|2JOD|A Chain A, Pac1-Rshort N-Terminal Ec Domain Pacap(6-38) Complex
Length = 106
Score = 33.5 bits (75), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 23/53 (43%), Gaps = 3/53 (5%)
Query: 22 DSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRR---FALRTCLENG 71
DS+ CP M+D +CW GE CP F+ + R C E+G
Sbjct: 33 DSSPGCPGMWDNITCWKPAHVGEMVLVSCPELFRIFNPDQDMGVVSRNCTEDG 85
>pdb|3EMN|X Chain X, The Crystal Structure Of Mouse Vdac1 At 2.3 A Resolution
Length = 295
Score = 32.0 bits (71), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 31 FDGW-SCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTC 89
++GW + + +R NF VG+ + F L T + +GT F + +K T
Sbjct: 158 YEGWLAGYQMNFETSKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETA 217
Query: 90 IDI 92
+++
Sbjct: 218 VNL 220
>pdb|2K4T|A Chain A, Solution Structure Of Human Vdac-1 In Ldao Micelles
Length = 291
Score = 32.0 bits (71), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 31 FDGW-SCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTC 89
++GW + + +R NF VG+ + F L T + +GT F + +K T
Sbjct: 146 YEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETA 205
Query: 90 IDI 92
+++
Sbjct: 206 VNL 208
>pdb|2JK4|A Chain A, Structure Of The Human Voltage-Dependent Anion Channel
Length = 294
Score = 31.6 bits (70), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/63 (23%), Positives = 29/63 (46%), Gaps = 1/63 (1%)
Query: 31 FDGW-SCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTC 89
++GW + + +R NF VG+ + F L T + +GT F + +K T
Sbjct: 149 YEGWLAGYQMNFETAKSRVTQSNFAVGYKTDEFQLHTNVNDGTEFGGSIYQKVNKKLETA 208
Query: 90 IDI 92
+++
Sbjct: 209 VNL 211
>pdb|2X57|A Chain A, Crystal Structure Of The Extracellular Domain Of Human
Vasoactive Intestinal Polypeptide Receptor 2
pdb|2X57|B Chain B, Crystal Structure Of The Extracellular Domain Of Human
Vasoactive Intestinal Polypeptide Receptor 2
pdb|2X57|C Chain C, Crystal Structure Of The Extracellular Domain Of Human
Vasoactive Intestinal Polypeptide Receptor 2
Length = 116
Score = 30.0 bits (66), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 27 CPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFAL-RTCLENG 71
C ++D +CW GET PCP F S+ + + C +G
Sbjct: 50 CSGVWDNITCWRPANVGETVTVPCPKVFSNFYSKAGNISKNCTSDG 95
>pdb|3IOL|A Chain A, Crystal Structure Of Glucagon-Like Peptide-1 In Complex
With The Extracellular Domain Of The Glucagon-Like
Peptide-1 Receptor
Length = 126
Score = 29.3 bits (64), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS--RRFALRTCLENGTWFQHPVTRKF 82
L+C FD ++CW G CP ++ S + R C G W Q +
Sbjct: 41 LFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLP 100
Query: 83 WSNYTTCID 91
W + + C +
Sbjct: 101 WRDLSECEE 109
>pdb|3C59|A Chain A, Crystal Structure Of The Ligand-Bound Glucagon-Like
Peptide-1 Receptor Extracellular Domain
pdb|3C5T|A Chain A, Crystal Structure Of The Ligand-Bound Glucagon-Like
Peptide-1 Receptor Extracellular Domain
Length = 122
Score = 28.9 bits (63), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/69 (24%), Positives = 27/69 (39%), Gaps = 2/69 (2%)
Query: 25 LYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDS--RRFALRTCLENGTWFQHPVTRKF 82
L+C FD ++CW G CP ++ S + R C G W Q +
Sbjct: 37 LFCNRTFDEYACWPDGEPGSFVNVSCPWYLPWASSVPQGHVYRFCTAEGLWLQKDNSSLP 96
Query: 83 WSNYTTCID 91
W + + C +
Sbjct: 97 WRDLSECEE 105
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.139 0.481
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,985,837
Number of Sequences: 62578
Number of extensions: 202325
Number of successful extensions: 523
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 484
Number of HSP's gapped (non-prelim): 37
length of query: 158
length of database: 14,973,337
effective HSP length: 91
effective length of query: 67
effective length of database: 9,278,739
effective search space: 621675513
effective search space used: 621675513
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.7 bits)