Query psy15495
Match_columns 158
No_of_seqs 221 out of 678
Neff 6.7
Searched_HMMs 46136
Date Fri Aug 16 22:40:49 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy15495.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/15495hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4564|consensus 99.9 4.6E-27 9.9E-32 205.2 2.1 117 9-127 47-181 (473)
2 smart00008 HormR Domain presen 99.8 1E-19 2.2E-24 122.0 4.1 65 24-94 2-66 (70)
3 PF02793 HRM: Hormone receptor 99.7 6.3E-19 1.4E-23 116.5 3.0 63 24-91 1-65 (66)
4 KOG4564|consensus 98.8 2.6E-09 5.5E-14 94.2 3.0 73 65-154 62-136 (473)
5 smart00008 HormR Domain presen 97.7 2.7E-05 5.9E-10 51.8 2.9 59 70-152 10-68 (70)
6 PF02793 HRM: Hormone receptor 97.6 2.3E-05 5.1E-10 51.3 0.9 57 70-147 9-65 (66)
7 PHA02831 EEV host range protei 93.4 0.12 2.7E-06 42.9 4.4 86 41-131 97-190 (268)
8 PHA02817 EEV Host range protei 92.8 0.16 3.4E-06 41.3 4.1 87 41-131 43-140 (225)
9 PHA02639 EEV host range protei 90.2 0.54 1.2E-05 39.6 4.8 86 42-131 105-200 (295)
10 KOG4289|consensus 90.2 0.15 3.2E-06 51.0 1.6 45 26-75 1857-1901(2531)
11 smart00032 CCP Domain abundant 88.1 0.61 1.3E-05 27.8 2.8 34 39-75 19-52 (57)
12 cd00033 CCP Complement control 87.8 0.69 1.5E-05 27.8 2.9 35 38-75 17-51 (57)
13 PF00084 Sushi: Sushi domain ( 81.9 1.1 2.4E-05 26.9 1.8 35 38-75 17-51 (56)
14 PHA02927 secreted complement-b 81.2 1.6 3.4E-05 35.9 3.0 81 42-131 168-256 (263)
15 PHA02639 EEV host range protei 81.1 2.4 5.1E-05 35.7 4.1 86 39-131 39-139 (295)
16 PHA02954 EEV membrane glycopro 60.2 11 0.00024 32.2 3.5 79 42-131 149-232 (317)
17 PHA02927 secreted complement-b 53.8 12 0.00026 30.6 2.6 31 42-75 226-256 (263)
18 PHA02831 EEV host range protei 48.5 16 0.00035 30.4 2.6 31 42-75 160-190 (268)
19 PHA02954 EEV membrane glycopro 45.4 42 0.00091 28.6 4.7 81 41-133 39-123 (317)
20 PHA02817 EEV Host range protei 42.8 22 0.00048 28.9 2.5 31 42-75 110-140 (225)
21 PF10891 DUF2719: Protein of u 23.1 33 0.00071 23.5 0.4 14 135-148 64-77 (81)
22 cd07692 Ig_CD3_epsilon Immunog 21.2 60 0.0013 21.3 1.3 13 41-53 5-17 (65)
No 1
>KOG4564|consensus
Probab=99.93 E-value=4.6e-27 Score=205.23 Aligned_cols=117 Identities=29% Similarity=0.538 Sum_probs=99.0
Q ss_pred ccccccccCCCCCCCCCCCcccccccccCCCCCCCceEEecCCccccccc--cccceeeeeCCCCeEEecCCCCcccccc
Q psy15495 9 LTTLNFMFQTLSLDSTLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFD--SRRFALRTCLENGTWFQHPVTRKFWSNY 86 (158)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~--~~~~a~R~C~~dG~W~~~p~t~~~wtnY 86 (158)
.|.+.++.+++..+ +.+||++||+++|||+|++|++|.++||+||++|+ .+++|+|+|++||+|..+|.. ++|+||
T Consensus 47 ~c~~~l~~~~~~~~-~~~Cn~twD~~lCWp~t~~G~~v~~~CP~yf~~~~~~~~~~v~R~C~~~G~W~~~~~~-~~W~ny 124 (473)
T KOG4564|consen 47 QCLEELALEPPYSA-GLGCNGTWDGILCWPRTPAGTLVTVPCPDYFPGFSYSTSGNVTRNCTSNGTWSERPPS-RTWTNY 124 (473)
T ss_pred HHHHHHHhCCCccC-CCCCCCcCCccccCCCCCCCceEEecCccccCCCcccCCCceEeecCCCCccCCCCCc-CCCCCc
Confidence 45556666655533 78999999999999999999999999999999997 789999999999999999888 899999
Q ss_pred ccccCcchHH-----HHHhhhceecceeeeeeee-----------cceeEeeeCCCC
Q psy15495 87 TTCIDIEDLK-----VYLFLSCCFNGKKNGLIIN-----------LRFALRTCLENG 127 (158)
Q Consensus 87 t~C~~~~~~~-----~~~~~~~ly~gytvgys~~-----------~~~a~k~C~~nG 127 (158)
++|...++.+ ...++..++++|+|||+.+ ..|...+|.||-
T Consensus 125 t~C~~~~~~~~~~~~~~~~~~~~~~lytvGyslSl~sL~vAl~If~~FR~L~CtRn~ 181 (473)
T KOG4564|consen 125 TACGKNEEEEERQLDREYFLELLKILYTVGYSLSLVSLLVALIIFLYFRSLHCTRNY 181 (473)
T ss_pred hhccCcchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcchHHH
Confidence 9999886543 3357777889999999888 246788898875
No 2
>smart00008 HormR Domain present in hormone receptors.
Probab=99.78 E-value=1e-19 Score=121.98 Aligned_cols=65 Identities=38% Similarity=0.851 Sum_probs=56.9
Q ss_pred CCCCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcch
Q psy15495 24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED 94 (158)
Q Consensus 24 ~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~ 94 (158)
+.+|+++||+++|||+|++|++|.++||.++.+++....|+|+|+.+|.|..++ +||+.|.....
T Consensus 2 ~~~C~~~wD~~~CWp~t~~G~~~~~~CP~~~~g~~~~~~a~R~C~~~G~W~~~~------~ny~~C~~~~~ 66 (70)
T smart00008 2 DLGCPATWDGIICWPQTPAGQLVEVPCPDYFSGFSYKTGASRNCTENGGWSPPF------PNYSNCTSNDY 66 (70)
T ss_pred CCCCccccccccCCCCCCCCCEEEecCCCcccCcCCCCCEEEEcCCCCCCccCC------CCHhhccCCcc
Confidence 468999999999999999999999999999999876555999999999898532 79999987643
No 3
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=99.75 E-value=6.3e-19 Score=116.51 Aligned_cols=63 Identities=51% Similarity=1.110 Sum_probs=51.8
Q ss_pred CCCCcccccccccCCCCCCCceEEecCCcccccc--ccccceeeeeCCCCeEEecCCCCccccccccccC
Q psy15495 24 TLYCPTMFDGWSCWNATLAGETARTPCPNFIVGF--DSRRFALRTCLENGTWFQHPVTRKFWSNYTTCID 91 (158)
Q Consensus 24 ~~~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~--~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~ 91 (158)
+.+||++||+++|||+|++|++|+++||.++.++ +..++|+|.|+.+|+|..+ .. +||+.|..
T Consensus 1 ~~~C~~~~d~~~cWp~T~~G~~a~~~CP~~~~~~~~~~~g~a~R~C~~nG~W~~~----~~-~nys~C~~ 65 (66)
T PF02793_consen 1 GSYCPATWDGWLCWPPTPAGETASQPCPSGFYGFGSDTSGNATRNCTENGTWEEH----RP-PNYSNCVS 65 (66)
T ss_dssp -SCB--EEESSCEE-SBETTEEEEEECSTTSTCCTSSTTSEEEEEEETTSSBECS----SC-EBHTTCSS
T ss_pred CCCCChhhCCcCCCCCCCCCCEEEeeCcCCccccccccceeEEEEcCCCCcCCCc----CC-CCcccccC
Confidence 4689999999999999999999999999999755 4578999999999999864 23 89999964
No 4
>KOG4564|consensus
Probab=98.80 E-value=2.6e-09 Score=94.20 Aligned_cols=73 Identities=27% Similarity=0.421 Sum_probs=59.2
Q ss_pred eeeCC--CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCccccc
Q psy15495 65 RTCLE--NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNY 142 (158)
Q Consensus 65 R~C~~--dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny 142 (158)
..|.. || |.|||.++++-.....|+.+. .+.. ....++++|.|++||+|..+|.+ ++|+||
T Consensus 62 ~~Cn~twD~-~lCWp~t~~G~~v~~~CP~yf------------~~~~---~~~~~~v~R~C~~~G~W~~~~~~-~~W~ny 124 (473)
T KOG4564|consen 62 LGCNGTWDG-ILCWPRTPAGTLVTVPCPDYF------------PGFS---YSTSGNVTRNCTSNGTWSERPPS-RTWTNY 124 (473)
T ss_pred CCCCCcCCc-cccCCCCCCCceEEecCcccc------------CCCc---ccCCCceEeecCCCCccCCCCCc-CCCCCc
Confidence 57776 88 899999998877778898874 2221 23567899999999999999999 999999
Q ss_pred cccccccccccc
Q psy15495 143 TTCIDIEDLKVS 154 (158)
Q Consensus 143 ~~C~~~~~~~~~ 154 (158)
++|....+++.+
T Consensus 125 t~C~~~~~~~~~ 136 (473)
T KOG4564|consen 125 TACGKNEEEEER 136 (473)
T ss_pred hhccCcchhhhh
Confidence 999988776554
No 5
>smart00008 HormR Domain present in hormone receptors.
Probab=97.73 E-value=2.7e-05 Score=51.85 Aligned_cols=59 Identities=27% Similarity=0.325 Sum_probs=44.0
Q ss_pred CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccccccccc
Q psy15495 70 NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIE 149 (158)
Q Consensus 70 dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~~C~~~~ 149 (158)
|| +.+||.+.++-..+..|+... .|+. ....|+|+|+.+|.|..++ +||+.|....
T Consensus 10 D~-~~CWp~t~~G~~~~~~CP~~~------------~g~~-----~~~~a~R~C~~~G~W~~~~------~ny~~C~~~~ 65 (70)
T smart00008 10 DG-IICWPQTPAGQLVEVPCPDYF------------SGFS-----YKTGASRNCTENGGWSPPF------PNYSNCTSND 65 (70)
T ss_pred cc-ccCCCCCCCCCEEEecCCCcc------------cCcC-----CCCCEEEEcCCCCCCccCC------CCHhhccCCc
Confidence 66 888888888888888888863 2221 1112999999999998876 8999998765
Q ss_pred ccc
Q psy15495 150 DLK 152 (158)
Q Consensus 150 ~~~ 152 (158)
..+
T Consensus 66 ~~~ 68 (70)
T smart00008 66 YNE 68 (70)
T ss_pred ccc
Confidence 544
No 6
>PF02793 HRM: Hormone receptor domain; InterPro: IPR001879 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). The secretin-like GPCRs include secretin [], calcitonin [], parathyroid hormone/parathyroid hormone-related peptides [] and vasoactive intestinal peptide [], all of which activate adenylyl cyclase and the phosphatidyl-inositol-calcium pathway. These receptors contain seven transmembrane regions, in a manner reminiscent of the rhodopsins and other receptors believed to interact with G-proteins (however there is no significant sequence identity between these families, the secretin-like receptors thus bear their own unique '7TM' signature). Their N terminus is probably located on the extracellular side of the membrane and potentially glycosylated. This N-terminal region contains a long conserved region which allow the binding of large peptidic ligand such as glucagon, secretin, VIP and PACAP; this region contains five conserved cysteines residues which could be involved in disulphide bond. The C-terminal region of these receptor is probably cytoplasmic. Every receptor gene in this family is encoded on multiple exons, and several of these genes are alternatively spliced to yield functionally distinct products. This domain is found in the extracellular part of some of the secretin-like (family 2) GPCRs including the calcitonin receptor; corticotropin releasing factor receptor 1; diuretic hormone receptor; glucagon-like peptide 1 receptor; and parathyroid hormone peptide receptor.; GO: 0004930 G-protein coupled receptor activity, 0016020 membrane; PDB: 3EHT_A 3EHU_A 2L27_A 3EHS_A 4DLO_B 2QKH_A 3C5T_A 3C59_A 3IOL_A 3N7R_B ....
Probab=97.58 E-value=2.3e-05 Score=51.31 Aligned_cols=57 Identities=32% Similarity=0.522 Sum_probs=40.9
Q ss_pred CCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecceeEeeeCCCCeEeecCCCCCcccccccccc
Q psy15495 70 NGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRFALRTCLENGTWFQHPVTRKFWSNYTTCID 147 (158)
Q Consensus 70 dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~a~k~C~~nG~W~~~p~s~~~w~ny~~C~~ 147 (158)
|| +.+||.+.++-+....|+.... .+++. ..++|+|+|..||+|..+ +. .||+.|..
T Consensus 9 d~-~~cWp~T~~G~~a~~~CP~~~~----------~~~~~-----~~g~a~R~C~~nG~W~~~----~~-~nys~C~~ 65 (66)
T PF02793_consen 9 DG-WLCWPPTPAGETASQPCPSGFY----------GFGSD-----TSGNATRNCTENGTWEEH----RP-PNYSNCVS 65 (66)
T ss_dssp ES-SCEE-SBETTEEEEEECSTTST----------CCTSS-----TTSEEEEEEETTSSBECS----SC-EBHTTCSS
T ss_pred CC-cCCCCCCCCCCEEEeeCcCCcc----------ccccc-----cceeEEEEcCCCCcCCCc----CC-CCcccccC
Confidence 45 6778888877777888887631 01111 246899999999999987 45 89999974
No 7
>PHA02831 EEV host range protein; Provisional
Probab=93.40 E-value=0.12 Score=42.93 Aligned_cols=86 Identities=14% Similarity=0.233 Sum_probs=50.7
Q ss_pred CCCceEEecCCc-cccccccccceeeeeCCCCeEEecCCCCccccccccccCcch--HHHHHhhhceecceeeeeeeecc
Q psy15495 41 LAGETARTPCPN-FIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIED--LKVYLFLSCCFNGKKNGLIINLR 117 (158)
Q Consensus 41 ~~G~~v~~~CP~-~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~--~~~~~~~~~ly~gytvgys~~~~ 117 (158)
..|..|...|-. +..+|.-.|...+.|. +|.|...+ + .- .-..|..... ......-..++.|-+|.|.|..+
T Consensus 97 ~~Gd~VtYsC~~g~~~GY~LvG~s~~tC~-dG~WS~~~--P-~C-~~i~C~~P~i~NG~i~~~~~~y~~G~~Vty~C~~G 171 (268)
T PHA02831 97 SFGDSVTYACKVNKLEKYSIVGNETVKCI-NKQWVPKY--P-VC-KLIRCKYPALQNGFLNVFEKKFYYGDIVNFKCKKG 171 (268)
T ss_pred eCCCEEEEECCCCCCCCeeEcCCceeEeC-CCcCCCCC--C-ee-eEeeCCCCCCCCCccccCCCceecCCEEEEEcCCC
Confidence 468889999952 2234444577889995 89896421 0 11 1134644321 11111122334677788888743
Q ss_pred -----eeEeeeCCCCeEee
Q psy15495 118 -----FALRTCLENGTWFQ 131 (158)
Q Consensus 118 -----~a~k~C~~nG~W~~ 131 (158)
-+...|..+|+|..
T Consensus 172 Y~L~Gss~~tC~~nG~Wsp 190 (268)
T PHA02831 172 FILLGSSVSTCDINSIWYP 190 (268)
T ss_pred CEECCCccEEECCCCeECC
Confidence 35789999999973
No 8
>PHA02817 EEV Host range protein; Provisional
Probab=92.82 E-value=0.16 Score=41.26 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=52.5
Q ss_pred CCCceEEecCCcccc--ccccccceeeeeCCCCeEEecCCCCccccccccccCcchH--HHH--Hhhhceecceeeeeee
Q psy15495 41 LAGETARTPCPNFIV--GFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDL--KVY--LFLSCCFNGKKNGLII 114 (158)
Q Consensus 41 ~~G~~v~~~CP~~~~--~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~--~~~--~~~~~ly~gytvgys~ 114 (158)
..|++|+..|..-.. +|.-.|...+.|..+|+|...+ ..- .-..|...... ... .....++.+-+|.|.|
T Consensus 43 ~~Gd~Vty~C~~G~~~~gY~L~G~~~i~C~~dG~Ws~~~---P~C-~~v~C~~P~i~NG~v~~~~~~~~y~yg~~Vty~C 118 (225)
T PHA02817 43 NIGSNVTFFCGNNTRGVRYTLVGEKNIICEKDGKWNKEF---PVC-KIIRCRFPALQNGFVNGIPDSKKFYYESEVSFSC 118 (225)
T ss_pred eCCCEEEEEeCCCCCCCCEEECCCCeEEECCCCcCCCCC---Cee-eeeECCCCCCcCceeEccccCCceEcCCEEEEEc
Confidence 579999999997322 2344667789999999997321 011 11245433210 000 0012344677788888
Q ss_pred ecce-----eEeeeCCCCeEee
Q psy15495 115 NLRF-----ALRTCLENGTWFQ 131 (158)
Q Consensus 115 ~~~~-----a~k~C~~nG~W~~ 131 (158)
..++ ....|..+|.|..
T Consensus 119 ~~Gy~L~G~~~~tC~~~G~WSp 140 (225)
T PHA02817 119 KPGFVLIGTKYSVCGINSSWIP 140 (225)
T ss_pred CCCCEEcCCCceEECCCCeECC
Confidence 7543 4688999999975
No 9
>PHA02639 EEV host range protein; Provisional
Probab=90.23 E-value=0.54 Score=39.57 Aligned_cols=86 Identities=19% Similarity=0.301 Sum_probs=49.4
Q ss_pred CCceEEecCCcc-ccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHH--HH--Hhhhceecceeeeeeeec
Q psy15495 42 AGETARTPCPNF-IVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLK--VY--LFLSCCFNGKKNGLIINL 116 (158)
Q Consensus 42 ~G~~v~~~CP~~-~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~--~~--~~~~~ly~gytvgys~~~ 116 (158)
.|.+|...|..- -.+|.-.|...+.|..+|+|...+. .-.. ..|......+ .. ..-..++.+-+|.|.|..
T Consensus 105 ~G~~V~y~C~~g~~~gY~L~G~~~~~C~~dG~WS~~~P---~C~~-i~C~~P~i~nG~v~~~~~~~~~~yg~~V~fsC~~ 180 (295)
T PHA02639 105 VGDEIYYVCNEHKGVQYSLVGNEKITCIQDKSWKPDPP---ICKM-INCRFPALQNGYINGIPSNKKFYYKTRVGFSCKS 180 (295)
T ss_pred CCCEEEEEeCCCCCCceEECCCCeEEECCCCeECCCCC---eeee-EEeCCCCCCCCceEcccCCCceecCCEEEEEcCC
Confidence 477788888751 0123334677899999999974211 0111 2454321110 00 001233457788888885
Q ss_pred ce-----eEeeeCCCCeEee
Q psy15495 117 RF-----ALRTCLENGTWFQ 131 (158)
Q Consensus 117 ~~-----a~k~C~~nG~W~~ 131 (158)
++ ..+.|..+|+|..
T Consensus 181 GY~L~Gs~~~tC~~nG~Ws~ 200 (295)
T PHA02639 181 GFDLVGEKYSTCNINATWFP 200 (295)
T ss_pred CCeEcCCCcEEECCCCeECC
Confidence 43 3688999999974
No 10
>KOG4289|consensus
Probab=90.21 E-value=0.15 Score=51.02 Aligned_cols=45 Identities=36% Similarity=0.746 Sum_probs=38.4
Q ss_pred CCcccccccccCCCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 26 YCPTMFDGWSCWNATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 26 ~C~~~wD~~~CWp~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
.||.....-+=||.+.-|..+.+|||.- ..|.|.|.|.+.|.|..
T Consensus 1857 ~CPk~ie~giwWP~tkfG~~a~~pCP~G-----~~G~AvR~C~e~~gWl~ 1901 (2531)
T KOG4289|consen 1857 KCPKAIEAGIWWPQTKFGSPAAVPCPKG-----SSGLAVRHCDETGGWLP 1901 (2531)
T ss_pred cCcHHHhhcccccccccCCcccccCCCC-----cchhhhhhhhccCCCCC
Confidence 4677766678899999999999999974 35689999999988986
No 11
>smart00032 CCP Domain abundant in complement control proteins; SUSHI repeat; short complement-like repeat (SCR). The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. A missense mutation in seventh CCP domain causes deficiency of the b subunit of factor XIII.
Probab=88.05 E-value=0.61 Score=27.80 Aligned_cols=34 Identities=29% Similarity=0.488 Sum_probs=27.6
Q ss_pred CCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 39 ATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
....|+++...|..- |.-.+...+.|..+|.|..
T Consensus 19 ~~~~g~~~~~~C~~G---y~l~g~~~~~C~~~g~Ws~ 52 (57)
T smart00032 19 TYSVGDTVTYSCNPG---YTLIGSSTITCLEDGTWSP 52 (57)
T ss_pred eecCCCEEEEEcCCC---CEEcCCCeeEECCCCEECC
Confidence 467899999999974 4445668999999999974
No 12
>cd00033 CCP Complement control protein (CCP) modules (aka short consensus repeats SCRs or SUSHI repeats) have been identified in several proteins of the complement system. SUSHI repeats (short complement-like repeat, SCR) are abundant in complement control proteins. The complement control protein (CCP) modules (also known as short consensus repeats SCRs or SUSHI repeats) contain approximately 60 amino acid residues and have been identified in several proteins of the complement system. Typically, 2 to 4 modules contribute to a binding site, implying that the orientation of the modules to each other is critical for function.
Probab=87.78 E-value=0.69 Score=27.77 Aligned_cols=35 Identities=29% Similarity=0.501 Sum_probs=28.4
Q ss_pred CCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 38 NATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 38 p~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
.....|++|...|.. +|.-.+.....|..+|.|..
T Consensus 17 ~~~~~g~~~~~~C~~---Gy~~~g~~~~~C~~~g~W~~ 51 (57)
T cd00033 17 GSYSYGSTVTYSCNE---GYTLVGSSTITCTENGGWSP 51 (57)
T ss_pred CcccCCCEEEEECCC---CCeEeCCCeeEECCCCeECC
Confidence 457899999999997 44445677999999999974
No 13
>PF00084 Sushi: Sushi domain (SCR repeat); InterPro: IPR000436 Sushi domains are also known as Complement control protein (CCP) modules, or short consensus repeats (SCR), exist in a wide variety of complement and adhesion proteins. The structure is known for this domain, it is based on a beta-sandwich arrangement; one face made up of three beta-strands hydrogen-bonded to form a triple-stranded region at its centre and the other face formed from two separate beta-strands []. CD21 (also called C3d receptor, CR2, Epstein Barr virus receptor or EBV-R) is the receptor for EBV and for C3d, C3dg and iC3b. Complement components may activate B cells through CD21. CD21 is part of a large signal-transduction complex that also involves CD19, CD81, and Leu13. Some of the proteins in this group are responsible for the molecular basis of the blood group antigens, surface markers on the outside of the red blood cell membrane. Most of these markers are proteins, but some are carbohydrates attached to lipids or proteins [Reid M.E., Lomas-Francis C. The Blood Group Antigen FactsBook Academic Press, London / San Diego, (1997)]. Complement decay-accelerating factor (Antigen CD55) belongs to the Cromer blood group system and is associated with Cr(a), Dr(a), Es(a), Tc(a/b/c), Wd(a), WES(a/b), IFC and UMC antigens. Complement receptor type 1 (C3b/C4b receptor) (Antigen CD35) belongs to the Knops blood group system and is associated with Kn(a/b), McC(a), Sl(a) and Yk(a) antigens. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; PDB: 1HFH_A 1HFI_A 1E5G_A 2UWN_A 2V8E_A 2XWB_H 3HS0_I 2OK5_A 2XWJ_J 3HRZ_D ....
Probab=81.95 E-value=1.1 Score=26.94 Aligned_cols=35 Identities=29% Similarity=0.524 Sum_probs=27.7
Q ss_pred CCCCCCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 38 NATLAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 38 p~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
..-..|+++...|-. +|...+...+.|..+|+|..
T Consensus 17 ~~~~~g~~~~~~C~~---Gy~~~g~~~~~C~~~g~W~~ 51 (56)
T PF00084_consen 17 NPYSYGSTVTFSCNP---GYELSGSSTITCQSNGQWSP 51 (56)
T ss_dssp SSEETTEEEEEEEST---TEEEESSSEEEEETTSEESS
T ss_pred CCccCCCEEEEcCCC---CCEecCCCEEEECCCCEECC
Confidence 556789999999965 44446669999999999974
No 14
>PHA02927 secreted complement-binding protein; Provisional
Probab=81.21 E-value=1.6 Score=35.88 Aligned_cols=81 Identities=15% Similarity=0.234 Sum_probs=45.6
Q ss_pred CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHH--HHHhh-hceecceeeeeeeecc-
Q psy15495 42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLK--VYLFL-SCCFNGKKNGLIINLR- 117 (158)
Q Consensus 42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~--~~~~~-~~ly~gytvgys~~~~- 117 (158)
.|.+|...|-. +|.-.+...+.|. +|+|...| .-. -..|......+ ..... ..+..+-+|.|.|...
T Consensus 168 ~g~~v~y~C~~---Gy~l~G~~~~~C~-~G~Ws~~P----~C~-~v~C~~P~i~ng~~~~~~k~~y~~g~~v~y~C~~Gy 238 (263)
T PHA02927 168 DGSVVTYSCNS---GYSLIGNSGVLCS-GGEWSDPP----TCQ-IVKCPHPTISNGYLSSGFKRSYSYNDNVDFKCKYGY 238 (263)
T ss_pred CCCEEEEECCC---CCEECCCCeeEEC-CCccCCCC----eEe-EeECcCCCCCCCEEecCCCCccccCCEEEEECCCCC
Confidence 47777788865 3333566788997 78897411 111 12454332111 00000 1223566777877744
Q ss_pred ----eeEeeeCCCCeEee
Q psy15495 118 ----FALRTCLENGTWFQ 131 (158)
Q Consensus 118 ----~a~k~C~~nG~W~~ 131 (158)
.+.+.|..+|+|..
T Consensus 239 ~l~G~~~~~C~~~g~Ws~ 256 (263)
T PHA02927 239 KLSGSSSSTCSPGNTWQP 256 (263)
T ss_pred eEcCCCCeEECCCCEECC
Confidence 34789999999963
No 15
>PHA02639 EEV host range protein; Provisional
Probab=81.06 E-value=2.4 Score=35.73 Aligned_cols=86 Identities=16% Similarity=0.272 Sum_probs=49.7
Q ss_pred CCCCCceEEecCCccccccccccceeeeeCCC---CeEEecCCCCccccccccccCcchHHHHHh---hhceecceeeee
Q psy15495 39 ATLAGETARTPCPNFIVGFDSRRFALRTCLEN---GTWFQHPVTRKFWSNYTTCIDIEDLKVYLF---LSCCFNGKKNGL 112 (158)
Q Consensus 39 ~t~~G~~v~~~CP~~~~~~~~~~~a~R~C~~d---G~W~~~p~t~~~wtnYt~C~~~~~~~~~~~---~~~ly~gytvgy 112 (158)
.-..|.+|.-.|-. ||.-.|...+.|..+ |+|.... ..- ....|......+-... -..+..|-+|.|
T Consensus 39 ~y~~G~~V~Y~Cn~---GY~L~G~~~~~C~~d~~nG~WS~~~---P~C-~~~~C~~Pp~~~nG~i~~~~~~y~~G~~V~y 111 (295)
T PHA02639 39 KYEIGKLIEYTCNT---DYALIGDRFRTCIKDKNNAIWSNKA---PFC-MLKECNDPPSIINGKIYNKREMYKVGDEIYY 111 (295)
T ss_pred cccCCCEEEEEeCC---CCEECCCCeEEEeCCCCCCEECCCC---CEE-eeccCcCCCCCCCcEEecCCCceECCCEEEE
Confidence 35679999999976 455566789999864 6897311 011 1234554322110000 011234566667
Q ss_pred eeec---------ceeEeeeCCCCeEee
Q psy15495 113 IINL---------RFALRTCLENGTWFQ 131 (158)
Q Consensus 113 s~~~---------~~a~k~C~~nG~W~~ 131 (158)
.|.. +...++|..+|+|..
T Consensus 112 ~C~~g~~~gY~L~G~~~~~C~~dG~WS~ 139 (295)
T PHA02639 112 VCNEHKGVQYSLVGNEKITCIQDKSWKP 139 (295)
T ss_pred EeCCCCCCceEECCCCeEEECCCCeECC
Confidence 6664 234789999999974
No 16
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=60.23 E-value=11 Score=32.16 Aligned_cols=79 Identities=22% Similarity=0.302 Sum_probs=42.3
Q ss_pred CCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHhhhceecceeeeeeeecce---
Q psy15495 42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLSCCFNGKKNGLIINLRF--- 118 (158)
Q Consensus 42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~~ly~gytvgys~~~~~--- 118 (158)
.|.+|...|-. +|.-.|...+.|..++ |...| .-. ..|......+-...-..+..|-+|.|.|..++
T Consensus 149 yGd~VtysC~~---GY~L~Gs~~i~C~~~~-Ws~~P----~C~--~~C~~P~i~NG~~sg~~y~~Gd~Vtf~C~~Gy~L~ 218 (317)
T PHA02954 149 FGEHITINCDV---GYEVIGASYISCTANS-WNVIP----SCQ--QKCDIPSLSNGLISGSTFSIGGVIHLSCKSGFTLT 218 (317)
T ss_pred CCCEEEEEcCC---CCEECcCCeeEECCCc-CCCCC----ccc--cccCCCCCCCCeEcCCCcccCCEEEEECCCCCeEC
Confidence 45566666643 3444577889999986 95211 111 13642211000000112235667777777543
Q ss_pred --eEeeeCCCCeEee
Q psy15495 119 --ALRTCLENGTWFQ 131 (158)
Q Consensus 119 --a~k~C~~nG~W~~ 131 (158)
....|. +|.|..
T Consensus 219 Gs~~itC~-~g~Ws~ 232 (317)
T PHA02954 219 GSPSSTCI-DGKWNP 232 (317)
T ss_pred CCcceEEC-CCeEeC
Confidence 468897 899985
No 17
>PHA02927 secreted complement-binding protein; Provisional
Probab=53.76 E-value=12 Score=30.65 Aligned_cols=31 Identities=19% Similarity=0.419 Sum_probs=22.1
Q ss_pred CCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
.|++|...|.. +|.-.|.+.+.|..+|+|..
T Consensus 226 ~g~~v~y~C~~---Gy~l~G~~~~~C~~~g~Ws~ 256 (263)
T PHA02927 226 YNDNVDFKCKY---GYKLSGSSSSTCSPGNTWQP 256 (263)
T ss_pred cCCEEEEECCC---CCeEcCCCCeEECCCCEECC
Confidence 56666666764 34345778899999999973
No 18
>PHA02831 EEV host range protein; Provisional
Probab=48.46 E-value=16 Score=30.41 Aligned_cols=31 Identities=26% Similarity=0.540 Sum_probs=23.1
Q ss_pred CCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
.|++|...|-. +|.-.|.+.+.|..+|+|..
T Consensus 160 ~G~~Vty~C~~---GY~L~Gss~~tC~~nG~Wsp 190 (268)
T PHA02831 160 YGDIVNFKCKK---GFILLGSSVSTCDINSIWYP 190 (268)
T ss_pred cCCEEEEEcCC---CCEECCCccEEECCCCeECC
Confidence 56677777765 44446778999999999974
No 19
>PHA02954 EEV membrane glycoprotein; Provisional
Probab=45.38 E-value=42 Score=28.62 Aligned_cols=81 Identities=16% Similarity=0.203 Sum_probs=46.6
Q ss_pred CCCceEEecCCccccccccccceeeeeCCCCeEEecCCCCccccccccccCcchHHHHHhhh-ceecceeeeeeeeccee
Q psy15495 41 LAGETARTPCPNFIVGFDSRRFALRTCLENGTWFQHPVTRKFWSNYTTCIDIEDLKVYLFLS-CCFNGKKNGLIINLRFA 119 (158)
Q Consensus 41 ~~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~~p~t~~~wtnYt~C~~~~~~~~~~~~~-~ly~gytvgys~~~~~a 119 (158)
..|++|...|=. ||...+ ....|..+| |...+ .-. ..|....... ..... .+..|-+|.|+|..++.
T Consensus 39 ~~gd~V~y~C~~---GY~l~~-~~itC~~~~-WS~~~----pC~--k~C~~p~~~~-~~~~~~~y~~G~~V~ysC~~Gy~ 106 (317)
T PHA02954 39 NDKQKVTFTCDS---GYYSLD-PNAVCETDK-WKYEN----PCK--KMCTVSDYVS-ELYDKPLYEVNSTITLICKDETK 106 (317)
T ss_pred cCCCEEEEEcCC---CcccCC-CCeEECCCc-ccCCC----CCC--CcCCCCcccc-ccccCCCccCCCEEEEEECCCCc
Confidence 678889988854 333222 257898876 97421 111 2454432111 11111 23357788899988878
Q ss_pred EeeeCC---CCeEeecC
Q psy15495 120 LRTCLE---NGTWFQHP 133 (158)
Q Consensus 120 ~k~C~~---nG~W~~~p 133 (158)
+.+|.. ++.|...|
T Consensus 107 ~~~C~~~g~~~~WS~~p 123 (317)
T PHA02954 107 YFRCEEKNGNTSWNDTV 123 (317)
T ss_pred EEEeCCCCCCCccCCCC
Confidence 889976 56676443
No 20
>PHA02817 EEV Host range protein; Provisional
Probab=42.84 E-value=22 Score=28.88 Aligned_cols=31 Identities=19% Similarity=0.353 Sum_probs=22.8
Q ss_pred CCceEEecCCccccccccccceeeeeCCCCeEEe
Q psy15495 42 AGETARTPCPNFIVGFDSRRFALRTCLENGTWFQ 75 (158)
Q Consensus 42 ~G~~v~~~CP~~~~~~~~~~~a~R~C~~dG~W~~ 75 (158)
.|++|...|.+ +|.-.|.....|..+|.|..
T Consensus 110 yg~~Vty~C~~---Gy~L~G~~~~tC~~~G~WSp 140 (225)
T PHA02817 110 YESEVSFSCKP---GFVLIGTKYSVCGINSSWIP 140 (225)
T ss_pred cCCEEEEEcCC---CCEEcCCCceEECCCCeECC
Confidence 56677777764 34445678899999999974
No 21
>PF10891 DUF2719: Protein of unknown function (DUF2719); InterPro: IPR020122 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf56; it is a family of uncharacterised viral proteins.
Probab=23.15 E-value=33 Score=23.46 Aligned_cols=14 Identities=50% Similarity=1.042 Sum_probs=10.8
Q ss_pred CCCccccccccccc
Q psy15495 135 TRKFWSNYTTCIDI 148 (158)
Q Consensus 135 s~~~w~ny~~C~~~ 148 (158)
.-++|.||+.|...
T Consensus 64 ~~ktw~n~~~c~al 77 (81)
T PF10891_consen 64 NPKTWSNYTNCSAL 77 (81)
T ss_pred CCcccccccCCchh
Confidence 34689999999653
No 22
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=21.19 E-value=60 Score=21.27 Aligned_cols=13 Identities=31% Similarity=0.672 Sum_probs=10.6
Q ss_pred CCCceEEecCCcc
Q psy15495 41 LAGETARTPCPNF 53 (158)
Q Consensus 41 ~~G~~v~~~CP~~ 53 (158)
-.|++|.+-||..
T Consensus 5 isGTtVtlTCP~~ 17 (65)
T cd07692 5 ISGTTVTVTCPLS 17 (65)
T ss_pred EeccEEEEECCCC
Confidence 3589999999954
Done!